BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017743
         (366 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255582522|ref|XP_002532046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528289|gb|EEF30336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 478

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 281/357 (78%), Positives = 328/357 (91%), Gaps = 2/357 (0%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQKQRWYIAD+G+YSKLI+VMGKKGQTR+AMWLFSEMRNSGCRPD SVYNALITAHLH++
Sbjct: 122 MQKQRWYIADSGVYSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDSSVYNALITAHLHSK 181

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           DKAKAL KALGYF+KMKGM+RC+PN+VTYNILLRA AQARNV+QVNALFK+L +SI++PD
Sbjct: 182 DKAKALIKALGYFEKMKGMQRCQPNVVTYNILLRAFAQARNVNQVNALFKDLDQSIVSPD 241

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           IYTYNGVMDAYGKNGMI+EMESVLSRMKSNQCKPDIITFNLLIDSYGK+Q FDKMEQVFK
Sbjct: 242 IYTYNGVMDAYGKNGMIREMESVLSRMKSNQCKPDIITFNLLIDSYGKKQDFDKMEQVFK 301

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           SL+HSKE+PTLPTFNSMI NYGKAR +  AE V QKMT MKYTP+FITYE +I MYG+CD
Sbjct: 302 SLLHSKERPTLPTFNSMITNYGKARQKENAESVLQKMTKMKYTPNFITYESLIMMYGFCD 361

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           +VS+AREIFD++ + GK++KVSTLNAML+ YC+NGLP EADLLF+N+ N+G+ PDS+TYK
Sbjct: 362 SVSKAREIFDDMIESGKEVKVSTLNAMLDVYCLNGLPMEADLLFDNARNVGLLPDSTTYK 421

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS--SLAGSQSGSAKT 355
           LLYKAYTKANMK+LVQKLLK M+++GI+PNKRFFL+AL  F S  + +G+Q  +AKT
Sbjct: 422 LLYKAYTKANMKKLVQKLLKHMDRDGIIPNKRFFLDALGAFKSLPASSGNQQNNAKT 478


>gi|356511125|ref|XP_003524280.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Glycine max]
          Length = 503

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 270/356 (75%), Positives = 317/356 (89%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQKQRWYIAD GIYSKLI+VMGKKGQTR+AMWLFSEMRN+GCRPD SVYNALITAHLH+R
Sbjct: 99  MQKQRWYIADNGIYSKLISVMGKKGQTRMAMWLFSEMRNTGCRPDTSVYNALITAHLHSR 158

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           DK KALAKA+GYFQKMKGMERCKPNIVTYNILLRA AQARNV+QVN+LFK+L ESI++PD
Sbjct: 159 DKTKALAKAIGYFQKMKGMERCKPNIVTYNILLRAFAQARNVEQVNSLFKDLDESIVSPD 218

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           IYT+NGVMDAYGKNGMI+EME+VL+RMKSNQCKPD+ITFNLLIDSYGK+Q F KMEQVFK
Sbjct: 219 IYTFNGVMDAYGKNGMIREMEAVLARMKSNQCKPDLITFNLLIDSYGKKQEFGKMEQVFK 278

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           SL+ SKE+ +LPTFNSMI+NYGKARL+ KAE VF++MT M YTPSF+T+E +I MYG+CD
Sbjct: 279 SLLRSKERASLPTFNSMILNYGKARLKDKAEDVFKRMTDMGYTPSFVTHESLIYMYGFCD 338

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            VSRA ++FDEL +    +KVSTLNAML+ YC+NGLP EAD LFE ++++ + PDSST+K
Sbjct: 339 CVSRAAQLFDELVESKAHIKVSTLNAMLDVYCINGLPQEADSLFERANSIKIYPDSSTFK 398

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTD 356
           LLYKAYTKAN KEL+ KLLK M+++GIVPNKRFFL+AL   +S  A S+S +A TD
Sbjct: 399 LLYKAYTKANQKELLDKLLKHMDKDGIVPNKRFFLDALGAVASLPANSESANAATD 454


>gi|356528509|ref|XP_003532845.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Glycine max]
          Length = 580

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 271/356 (76%), Positives = 317/356 (89%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQKQRWYIAD GIYSKLI+VMGKKGQTR+AMWLFSEMRN+GCRPD SVYNALITAHL +R
Sbjct: 162 MQKQRWYIADNGIYSKLISVMGKKGQTRMAMWLFSEMRNTGCRPDTSVYNALITAHLRSR 221

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           DK KALAKA+GYFQKMKGMERCKPNIVTYNILLRA AQARNV+QVN+LFK+L ESI++PD
Sbjct: 222 DKIKALAKAIGYFQKMKGMERCKPNIVTYNILLRAFAQARNVEQVNSLFKDLDESIVSPD 281

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           IYT+NGVMDAYGKNGMI+EME+VL+RMKSNQCKPD+ITFNLLIDSYGK+QAF KMEQVFK
Sbjct: 282 IYTFNGVMDAYGKNGMIREMEAVLARMKSNQCKPDLITFNLLIDSYGKKQAFGKMEQVFK 341

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           SL+HSKE+P+LPTFNSMI+NYGKARL+ KAE VF+KMT M YT SF+T+E +I MYG+CD
Sbjct: 342 SLLHSKERPSLPTFNSMILNYGKARLKDKAEDVFKKMTDMGYTLSFVTHESMIYMYGFCD 401

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            VSRA ++FDEL +    +KVSTLNAML+ YC+NGLP EAD LFE + ++ + PDSST+K
Sbjct: 402 CVSRAAQLFDELVESKVHIKVSTLNAMLDVYCLNGLPQEADSLFERAISIKIHPDSSTFK 461

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTD 356
           LLYKAYTKAN KEL+ KLLK M+++GI+PNKRFFL+AL   +S  A S+S +A TD
Sbjct: 462 LLYKAYTKANQKELLDKLLKHMDKDGIIPNKRFFLDALGAVASLPANSESANAATD 517


>gi|225438599|ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic [Vitis vinifera]
 gi|296082481|emb|CBI21486.3| unnamed protein product [Vitis vinifera]
          Length = 489

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 284/366 (77%), Positives = 319/366 (87%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQKQRWYIAD G+YSKLI+VMGKKGQTR+AMWLFSEMRNSGCRPD SVYNALITAHLH+R
Sbjct: 124 MQKQRWYIADNGVYSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSR 183

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           DK+KAL KALGYF KMKGMERCKPNIVTYNILLRA AQA+NV+Q NALFKEL+ESI++PD
Sbjct: 184 DKSKALIKALGYFDKMKGMERCKPNIVTYNILLRAFAQAQNVNQANALFKELNESIVSPD 243

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           I+T+NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN+LIDSYG+RQ FDKMEQVFK
Sbjct: 244 IFTFNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNVLIDSYGRRQEFDKMEQVFK 303

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           SL+ SKEKPTLPTFNSMI NYGKARL+ KAE VF+KMT M Y P+FITYE +I MYG+CD
Sbjct: 304 SLLRSKEKPTLPTFNSMITNYGKARLKEKAENVFKKMTDMGYAPNFITYESLIMMYGFCD 363

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            +SRAREIFDE+    K+MKVSTLNAMLE YCMNGLP EADLL E +      P SSTYK
Sbjct: 364 CISRAREIFDEMMASKKEMKVSTLNAMLEVYCMNGLPMEADLLLERARKNRPFPGSSTYK 423

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRS 360
           LLYKAYTKA+ KEL++KLLK M+ +GI+PNKRFFLEAL  F SS A  +S  + T LTR 
Sbjct: 424 LLYKAYTKADQKELLEKLLKLMDSDGILPNKRFFLEALGAFGSSPASQESAGSTTGLTRP 483

Query: 361 LSTAKS 366
            ++AK+
Sbjct: 484 RNSAKT 489


>gi|224081220|ref|XP_002306340.1| predicted protein [Populus trichocarpa]
 gi|222855789|gb|EEE93336.1| predicted protein [Populus trichocarpa]
          Length = 416

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 260/338 (76%), Positives = 307/338 (90%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQKQRWY+AD G YSKLI+VMGKKGQTR+AMWLFSEMRNSGCRPD SVYNALITAHLH++
Sbjct: 79  MQKQRWYVADNGCYSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSK 138

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           DKAK+L KAL YF+KMK +ERC+PN+VTYNI+LRA AQARNV+QVNALFK+L ESI++PD
Sbjct: 139 DKAKSLTKALAYFEKMKSIERCQPNVVTYNIILRAFAQARNVNQVNALFKDLEESIVSPD 198

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           IYTYNGV+DAYGKNGMI+EMESVLSRMK +QCKPDIITFNLLIDSYGK+Q F+KMEQVFK
Sbjct: 199 IYTYNGVLDAYGKNGMIREMESVLSRMKIDQCKPDIITFNLLIDSYGKKQDFEKMEQVFK 258

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           SL+ SKEKPTLPTFNSMI+NYGKARL+ KAE VF+KM  M+YTPSFIT+E +I MYG CD
Sbjct: 259 SLLRSKEKPTLPTFNSMIVNYGKARLKDKAESVFKKMADMRYTPSFITFESLIMMYGICD 318

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            VS+AR+IFD++ + GK++KVSTLNA+L  YCMNGL  EA +L EN+ ++GV P+SSTYK
Sbjct: 319 CVSKARDIFDDMVESGKEVKVSTLNAVLNVYCMNGLHMEAHILLENARSIGVPPNSSTYK 378

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           LLY+AYTKA MKELVQKLLK M+++GI+PNKRFF++AL
Sbjct: 379 LLYRAYTKAKMKELVQKLLKHMDKDGIIPNKRFFVDAL 416


>gi|15235161|ref|NP_195672.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75266408|sp|Q9SV96.1|PP358_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g39620, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2453; Flags: Precursor
 gi|5042178|emb|CAB44697.1| putative protein [Arabidopsis thaliana]
 gi|7270946|emb|CAB80625.1| putative protein [Arabidopsis thaliana]
 gi|58013022|gb|AAW62964.1| chloroplast embryo-defective 2453 [Arabidopsis thaliana]
 gi|332661694|gb|AEE87094.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 563

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 264/350 (75%), Positives = 301/350 (86%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQKQRWYI D G+YSKLI+VMGKKGQTR+AMWLFSEM+NSGCRPD SVYNALITAHLHTR
Sbjct: 123 MQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTR 182

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           DKAKAL K  GY  KMKG+ERC+PN+VTYNILLRA AQ+  VDQVNALFK+L  S ++PD
Sbjct: 183 DKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPD 242

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           +YT+NGVMDAYGKNGMIKEME+VL+RM+SN+CKPDIITFN+LIDSYGK+Q F+KMEQ FK
Sbjct: 243 VYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFK 302

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           SLM SKEKPTLPTFNSMIINYGKAR+  KAE+VF+KM  M Y PSFITYEC+I MYGYC 
Sbjct: 303 SLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCG 362

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           +VSRAREIF+E+ +  + +K STLNAMLE YC NGL  EAD LF N+    V PD+STYK
Sbjct: 363 SVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYK 422

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
            LYKAYTKA+MKE VQ L+K+ME++GIVPNKRFFLEALE F S L GS S
Sbjct: 423 FLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLEALEVFGSRLPGSGS 472


>gi|334187332|ref|NP_001190970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332661695|gb|AEE87095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 510

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 264/350 (75%), Positives = 301/350 (86%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQKQRWYI D G+YSKLI+VMGKKGQTR+AMWLFSEM+NSGCRPD SVYNALITAHLHTR
Sbjct: 123 MQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTR 182

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           DKAKAL K  GY  KMKG+ERC+PN+VTYNILLRA AQ+  VDQVNALFK+L  S ++PD
Sbjct: 183 DKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPD 242

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           +YT+NGVMDAYGKNGMIKEME+VL+RM+SN+CKPDIITFN+LIDSYGK+Q F+KMEQ FK
Sbjct: 243 VYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFK 302

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           SLM SKEKPTLPTFNSMIINYGKAR+  KAE+VF+KM  M Y PSFITYEC+I MYGYC 
Sbjct: 303 SLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCG 362

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           +VSRAREIF+E+ +  + +K STLNAMLE YC NGL  EAD LF N+    V PD+STYK
Sbjct: 363 SVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYK 422

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
            LYKAYTKA+MKE VQ L+K+ME++GIVPNKRFFLEALE F S L GS S
Sbjct: 423 FLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLEALEVFGSRLPGSGS 472


>gi|449451631|ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Cucumis sativus]
          Length = 528

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 264/361 (73%), Positives = 308/361 (85%), Gaps = 5/361 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQKQRWYIAD G+YSKLI++MGKKGQ R+AMWLFSEMRNSGCRPD SVYNALITAHLH++
Sbjct: 117 MQKQRWYIADNGVYSKLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSK 176

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           DKAKAL K L YF+KMKGMERCKPNIVTYNIL RA AQA  VDQVN LFK+L ES+++ D
Sbjct: 177 DKAKALVKVLSYFEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSAD 236

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           IYTYNGVMDAYGKNG IKEME +L+RMKSNQ KPDII+FNLLIDSYGK+Q FDKMEQVFK
Sbjct: 237 IYTYNGVMDAYGKNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFK 296

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           SL+ SKE+PTLPTFNSMI NYGKARL+ KAE VF+KM  M Y PS++T E +I MYG+CD
Sbjct: 297 SLLRSKERPTLPTFNSMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCD 356

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            VS+AREIFD +   GK+++VSTLNAML+ YC+NGLP EADLLFE++ NM V PDS+TYK
Sbjct: 357 CVSKAREIFDGMVNSGKEVRVSTLNAMLDVYCINGLPLEADLLFESAGNMRVFPDSTTYK 416

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL-----AGSQSGSAKT 355
           LLYKAYTKA+ KEL++KLLK M++ GI+PNKRFFL+AL T  SS      A +++GS  +
Sbjct: 417 LLYKAYTKADKKELLEKLLKNMDKAGIIPNKRFFLDALGTIGSSQEKPEPARTRTGSRNS 476

Query: 356 D 356
           D
Sbjct: 477 D 477


>gi|449525698|ref|XP_004169853.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Cucumis sativus]
          Length = 494

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 260/344 (75%), Positives = 300/344 (87%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQKQRWYIAD G+YSKLI++MGKKGQ R+AMWLFSEMRNSGCRPD SVYNALITAHLH++
Sbjct: 117 MQKQRWYIADNGVYSKLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSK 176

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           DKAKAL K L YF+KMKGMERCKPNIVTYNIL RA AQA  VDQVN LFK+L ES+++ D
Sbjct: 177 DKAKALVKVLSYFEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSAD 236

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           IYTYNGVMDAYGKNG IKEME +L+RMKSNQ KPDII+FNLLIDSYGK+Q FDKMEQVFK
Sbjct: 237 IYTYNGVMDAYGKNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFK 296

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           SL+ SKE+PTLPTFNSMI NYGKARL+ KAE VF+KM  M Y PS++T E +I MYG+CD
Sbjct: 297 SLLRSKERPTLPTFNSMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCD 356

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            VS+AREIFD +   GK+++VSTLNAML+ YC+NGLP EADLLFE++ NM V PDS+TYK
Sbjct: 357 CVSKAREIFDGMVNSGKEVRVSTLNAMLDVYCINGLPLEADLLFESAGNMRVFPDSTTYK 416

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           LLYKAYTKA+ KEL++KLLK M++ GI+PNKRFFL+AL T  SS
Sbjct: 417 LLYKAYTKADKKELLEKLLKNMDKAGIIPNKRFFLDALGTIGSS 460


>gi|125541147|gb|EAY87542.1| hypothetical protein OsI_08951 [Oryza sativa Indica Group]
          Length = 482

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 248/344 (72%), Positives = 294/344 (85%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQKQRWY+AD GIYSKLI+VMG+KGQ R+AMWLFS+MRNSGCRPD SVYN+LI AHLH+R
Sbjct: 98  MQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCRPDTSVYNSLIGAHLHSR 157

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           DK+KALAKALGYF+KMK ++RC+PNIVTYNILLRA AQA +  Q++ LFK+L ES ++PD
Sbjct: 158 DKSKALAKALGYFEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPD 217

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           IYTYNGVMDAYGKNGMI EMESVL RMKSNQC+PD+ITFN+LIDSYG++QAFDKMEQVFK
Sbjct: 218 IYTYNGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQVFK 277

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           SL+ SKEKPT PTFNSMI NYGKARL+ KAE V  KMT M + P+++T EC+I MY YCD
Sbjct: 278 SLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYAYCD 337

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            VSRAR+IFDEL     ++ +S++NAML+AYCMNGLP EAD L ++    G  P +STYK
Sbjct: 338 CVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSASTYK 397

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           LLYKAYTKAN K+L+QKLLKRM   GIVPNK+FFL+ALE F ++
Sbjct: 398 LLYKAYTKANDKKLIQKLLKRMNSQGIVPNKKFFLDALEAFGNT 441



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 93/242 (38%), Gaps = 73/242 (30%)

Query: 96  CAQARNVDQVN-----ALFKELH-ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           C +  +VDQ        +F+ +  +     D   Y+ ++   G+ G I+    + S+M++
Sbjct: 77  CLEGVDVDQQEMNFEVPVFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRN 136

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
           + C+PD   +N LI ++                +HS++K               ++   K
Sbjct: 137 SGCRPDTSVYNSLIGAH----------------LHSRDK---------------SKALAK 165

Query: 210 AEYVFQKM-TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           A   F+KM T  +  P+ +TY                                   N +L
Sbjct: 166 ALGYFEKMKTIDRCQPNIVTY-----------------------------------NILL 190

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
            A+   G   + D+LF++     V+PD  TY  +  AY K  M   ++ +L RM+ N   
Sbjct: 191 RAFAQAGDTKQLDILFKDLDESPVSPDIYTYNGVMDAYGKNGMITEMESVLVRMKSNQCR 250

Query: 329 PN 330
           P+
Sbjct: 251 PD 252



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/237 (18%), Positives = 100/237 (42%), Gaps = 9/237 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALA 67
           D   Y+ ++   GK G       +   M+++ CRPD   +N LI ++   +  DK + + 
Sbjct: 217 DIYTYNGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQVF 276

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           K+L     ++  E  KP   T+N ++    +AR  ++   +  ++ E    P+  T   +
Sbjct: 277 KSL-----LRSKE--KPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECL 329

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  Y     +     +   + S+Q    + + N ++D+Y       + +Q+  S++    
Sbjct: 330 IMMYAYCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGA 389

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
            P+  T+  +   Y KA  +   + + ++M +    P+   +   +  +G  D   R
Sbjct: 390 VPSASTYKLLYKAYTKANDKKLIQKLLKRMNSQGIVPNKKFFLDALEAFGNTDKKPR 446


>gi|297797974|ref|XP_002866871.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
 gi|297312707|gb|EFH43130.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
          Length = 561

 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 250/340 (73%), Positives = 289/340 (85%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQKQRWYI D G+YSKLI+VMGKKGQTR+AMWLFSEM+NSGCRPD SVYNALITAHLHTR
Sbjct: 123 MQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTR 182

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           DKAKAL K  GYF KMKGMERC+PN+VTYNILLRA AQ+  VDQVNALFK+L  S ++PD
Sbjct: 183 DKAKALEKVRGYFDKMKGMERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPD 242

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           +YT+NGVMDAYGKNGMIKEME+VL+RM+SN+CKPDIITFN+LIDSYGK+Q F+KMEQ FK
Sbjct: 243 VYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFK 302

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           SLM SKEKPTLPTFNSMIINYGKAR+  KAE+VF+KM  M Y PSFITYEC+I MYGYC 
Sbjct: 303 SLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYMPSFITYECMIMMYGYCG 362

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           +VSRAREIF+E+    + +K STLNAMLE YC NGL  EAD LF N+    V PD+STYK
Sbjct: 363 SVSRAREIFEEVVDSERVLKASTLNAMLEVYCRNGLYMEADKLFHNASAFRVHPDASTYK 422

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALET 340
            LYKAYTKA+MKE VQ L+K+ME++GI   + + +  L+T
Sbjct: 423 FLYKAYTKADMKEHVQILMKKMEKDGIFSGQDYLVRILKT 462


>gi|125583699|gb|EAZ24630.1| hypothetical protein OsJ_08397 [Oryza sativa Japonica Group]
          Length = 482

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 247/344 (71%), Positives = 293/344 (85%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQKQRWY+AD GIYSKLI+VMG+KGQ R+AMWLFS+MRNSGCRPD SVYN+LI  HLH+R
Sbjct: 98  MQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCRPDTSVYNSLIGTHLHSR 157

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           DK+KALAKALGYF+KMK ++RC+PNIVTYNILLRA AQA +  Q++ LFK+L ES ++PD
Sbjct: 158 DKSKALAKALGYFEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPD 217

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           IYTYNGVMDAYGKNGMI EMESVL RMKSNQC+PD+ITFN+LIDSYG++QAFDKMEQVFK
Sbjct: 218 IYTYNGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQVFK 277

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           SL+ SKEKPT PTFNSMI NYGKARL+ KAE V  KMT M + P+++T EC+I MY YCD
Sbjct: 278 SLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYAYCD 337

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            VSRAR+IFDEL     ++ +S++NAML+AYCMNGLP EAD L ++    G  P +STYK
Sbjct: 338 CVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSASTYK 397

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           LLYKAYTKAN K+L+QKLLKRM   GIVPNK+FFL+ALE F ++
Sbjct: 398 LLYKAYTKANDKKLIQKLLKRMNSQGIVPNKKFFLDALEAFGNT 441



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 93/242 (38%), Gaps = 73/242 (30%)

Query: 96  CAQARNVDQVN-----ALFKELH-ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           C +  +VDQ        +F+ +  +     D   Y+ ++   G+ G I+    + S+M++
Sbjct: 77  CLEGVDVDQQEMNFEVPVFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRN 136

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
           + C+PD   +N LI ++                +HS++K               ++   K
Sbjct: 137 SGCRPDTSVYNSLIGTH----------------LHSRDK---------------SKALAK 165

Query: 210 AEYVFQKM-TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           A   F+KM T  +  P+ +TY                                   N +L
Sbjct: 166 ALGYFEKMKTIDRCQPNIVTY-----------------------------------NILL 190

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
            A+   G   + D+LF++     V+PD  TY  +  AY K  M   ++ +L RM+ N   
Sbjct: 191 RAFAQAGDTKQLDILFKDLDESPVSPDIYTYNGVMDAYGKNGMITEMESVLVRMKSNQCR 250

Query: 329 PN 330
           P+
Sbjct: 251 PD 252



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/237 (18%), Positives = 100/237 (42%), Gaps = 9/237 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALA 67
           D   Y+ ++   GK G       +   M+++ CRPD   +N LI ++   +  DK + + 
Sbjct: 217 DIYTYNGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQVF 276

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           K+L     ++  E  KP   T+N ++    +AR  ++   +  ++ E    P+  T   +
Sbjct: 277 KSL-----LRSKE--KPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECL 329

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  Y     +     +   + S+Q    + + N ++D+Y       + +Q+  S++    
Sbjct: 330 IMMYAYCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGA 389

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
            P+  T+  +   Y KA  +   + + ++M +    P+   +   +  +G  D   R
Sbjct: 390 VPSASTYKLLYKAYTKANDKKLIQKLLKRMNSQGIVPNKKFFLDALEAFGNTDKKPR 446


>gi|326522967|dbj|BAJ88529.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 539

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 242/344 (70%), Positives = 291/344 (84%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQKQRWY+AD GIYSKLI+VMG+KGQ R+AMWLFS+MRNSGC+PD SVYN+LI AHLH+R
Sbjct: 112 MQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSR 171

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           DK+KAL KALGYF KMKGMERC+PNIVTYNILLRACA+A +  QV+ LFK+L ESI++PD
Sbjct: 172 DKSKALVKALGYFDKMKGMERCQPNIVTYNILLRACARASDTKQVDILFKDLDESIVSPD 231

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           IYTYNGV+D YGKNGMI EMESVL RMKS QC+PD+ITFN+LIDSYG++Q FDKMEQVFK
Sbjct: 232 IYTYNGVIDGYGKNGMITEMESVLVRMKSKQCRPDVITFNILIDSYGRKQTFDKMEQVFK 291

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           SL+ SKE+PT PTFNSMI NYGKARL+ KAE V +KM  + + P+++T EC+I MY YCD
Sbjct: 292 SLLRSKERPTHPTFNSMITNYGKARLREKAESVIEKMQELGFKPNYVTQECLINMYAYCD 351

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            VS+A++IFDEL      + +S+LNAML+AYCMN LP EAD L + +   GV P +STYK
Sbjct: 352 CVSKAQQIFDELVSSQSTVPLSSLNAMLDAYCMNRLPMEADRLLDTAIEKGVVPSASTYK 411

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           LLY+AYT+AN K LVQKLL+RM + GIVPNK+FFL+ALE F +S
Sbjct: 412 LLYRAYTRANDKMLVQKLLQRMNKQGIVPNKKFFLDALEAFGTS 455


>gi|357519615|ref|XP_003630096.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524118|gb|AET04572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 635

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/359 (71%), Positives = 301/359 (83%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ+QRWYIAD G+YSKLI+VMGKKGQ RLAMWLFSEMRN+GCRPD SVYN+LI+AHLH+R
Sbjct: 107 MQRQRWYIADNGVYSKLISVMGKKGQIRLAMWLFSEMRNTGCRPDTSVYNSLISAHLHSR 166

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           DK+KAL KALGYF+KMK  ERCKPNIVTYNILLRA AQAR+V+QVN LFK+L ES ++PD
Sbjct: 167 DKSKALVKALGYFEKMKTTERCKPNIVTYNILLRAFAQARDVNQVNYLFKDLDESSVSPD 226

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           IYT+NGVMD YGKNGMI+EMESVL RMKSNQ K D+IT+NLLIDSYGK+Q FDKMEQVFK
Sbjct: 227 IYTFNGVMDGYGKNGMIREMESVLVRMKSNQVKLDLITYNLLIDSYGKKQQFDKMEQVFK 286

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           SL  SKEKPTLPTFNSMI+NYGKARL+ KAE VFQ MT M YTPSF+T+E +I MYG C 
Sbjct: 287 SLSRSKEKPTLPTFNSMILNYGKARLKDKAENVFQNMTDMGYTPSFVTHESLIHMYGLCG 346

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            VS A E+FD+L +    +KVSTLNAML+ YC+NGL  EAD LF  + ++ + PD++TYK
Sbjct: 347 CVSNAVELFDQLIESKVPIKVSTLNAMLDVYCINGLQQEADSLFTRAKSIKIFPDATTYK 406

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTR 359
           LLYKAYTKAN KEL+ KLLK+M+++ ++PNKRFFL+AL    SS   S S +A T  +R
Sbjct: 407 LLYKAYTKANSKELLDKLLKQMDKDSVIPNKRFFLDALGAIGSSTEKSGSANAGTGSSR 465


>gi|357138098|ref|XP_003570635.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Brachypodium distachyon]
          Length = 519

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 244/344 (70%), Positives = 289/344 (84%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQKQRWY+AD GIYSKLI+VMGKKGQ R+AMWLFS+MRNSGC+PD SVYN+LI AHLH+R
Sbjct: 102 MQKQRWYVADNGIYSKLISVMGKKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSR 161

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           DK+KALAKALGYF KMK +ERC+PNIVTYNILLRACA+A +  QV  LFK+L ES++ PD
Sbjct: 162 DKSKALAKALGYFDKMKTIERCQPNIVTYNILLRACARASDAKQVEILFKDLDESLVTPD 221

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           IYTYNGV+D YGKNGMIKEMESVL RMKS QC+PD+ITFN+LIDSYG++Q FDKMEQVFK
Sbjct: 222 IYTYNGVIDGYGKNGMIKEMESVLVRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQVFK 281

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           SL+ SKE+PT PTFNSMI NYGKARL+ KAE V +KM  + + PS++T EC+I MY YCD
Sbjct: 282 SLLRSKERPTHPTFNSMITNYGKARLKEKAESVLEKMDELGFKPSYVTQECLIMMYAYCD 341

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            VS+A++IFDEL      + +S+LNAML+AYCMN LP EAD L + +   GV P +STYK
Sbjct: 342 CVSKAQQIFDELVNSQSTVPLSSLNAMLDAYCMNRLPMEADRLLDAAIEKGVVPGASTYK 401

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           LLYKAYT+AN K LVQKLL RM + GIVPNK+FFL+ALE F +S
Sbjct: 402 LLYKAYTRANDKVLVQKLLGRMNKQGIVPNKKFFLDALEAFGTS 445


>gi|162460162|ref|NP_001106062.1| pentatricopeptide repeat 5 [Zea mays]
 gi|154520281|gb|ABS82814.1| pentatricopeptide repeat protein 5 [Zea mays]
 gi|413924537|gb|AFW64469.1| pentatricopeptide repeat 5 [Zea mays]
          Length = 499

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 241/344 (70%), Positives = 291/344 (84%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQKQRWY+AD GIYSKLI+VMG+KGQ R+AMWLFS+MRNSGC+PD SVYN+LI AHLH+R
Sbjct: 114 MQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSR 173

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           DK KALAKALGYF+KMK +ERC+P IVTYNILLRA AQA +  QV+ LFK+L ES+++PD
Sbjct: 174 DKTKALAKALGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPD 233

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           +YTYNGV+DAYGKNGMIKEMESVL RMKS QC+PD+ITFN+LIDSYG++Q FDKMEQVFK
Sbjct: 234 VYTYNGVLDAYGKNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFK 293

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           SL+ SKE+PT PTFNSMI NYG+ARL+ KAE V +KM  + + P+++T EC+I MY +CD
Sbjct: 294 SLLRSKERPTHPTFNSMITNYGRARLREKAESVVEKMEELGFKPNYVTQECLIIMYAHCD 353

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            VS+AR++FDEL      + +S+LN+MLEAYCMNGL TEAD L + +    V P+ STYK
Sbjct: 354 CVSKARQVFDELVTSQTKVHLSSLNSMLEAYCMNGLHTEADRLLDTALQQCVVPNGSTYK 413

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           LLYKAYTKAN K LVQKLLKRM + GIVPNK+FFL+ALE F +S
Sbjct: 414 LLYKAYTKANDKLLVQKLLKRMNKQGIVPNKKFFLDALEAFGTS 457


>gi|242065966|ref|XP_002454272.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
 gi|241934103|gb|EES07248.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
          Length = 519

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 242/344 (70%), Positives = 293/344 (85%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQKQRWY+AD GIYSKLI+VMG+KGQ R+AMWLFS+MRNSGC+PD SVYN+LI AHLH+R
Sbjct: 113 MQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSR 172

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           DK+KALAKALGYF+KMK + RC+P IVTYNILLRA AQA +  QV+ LFK+L ES+++PD
Sbjct: 173 DKSKALAKALGYFEKMKCIARCQPTIVTYNILLRAFAQAGDTKQVDILFKDLDESVVSPD 232

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           IYTYNGV+DAYGKNGMIKEMESVL RMKS QC+PD+ITFN+LIDSYG++Q FDKMEQVFK
Sbjct: 233 IYTYNGVLDAYGKNGMIKEMESVLLRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQVFK 292

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           SL+ SKE+PT PTFNSMI NYGKARL+ KAEYV +KM  + Y P+++T EC+I MY +CD
Sbjct: 293 SLLRSKERPTHPTFNSMITNYGKARLREKAEYVVKKMEELGYKPNYVTQECLIMMYAHCD 352

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            VS+AR++FDEL      +++S+LN+ML+AYCMNGL TEAD L + +    V P+ STYK
Sbjct: 353 CVSKARQVFDELVSSQNKVQLSSLNSMLDAYCMNGLHTEADQLLDTALQKCVVPNGSTYK 412

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           LLYKAYT+AN K LVQKLLKRM + GIVPNK+FFL+ALE F +S
Sbjct: 413 LLYKAYTRANDKVLVQKLLKRMNKQGIVPNKKFFLDALEAFGTS 456


>gi|223946379|gb|ACN27273.1| unknown [Zea mays]
 gi|413924536|gb|AFW64468.1| pentatricopeptide repeat 5 [Zea mays]
          Length = 386

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 241/344 (70%), Positives = 291/344 (84%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQKQRWY+AD GIYSKLI+VMG+KGQ R+AMWLFS+MRNSGC+PD SVYN+LI AHLH+R
Sbjct: 1   MQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSR 60

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           DK KALAKALGYF+KMK +ERC+P IVTYNILLRA AQA +  QV+ LFK+L ES+++PD
Sbjct: 61  DKTKALAKALGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPD 120

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           +YTYNGV+DAYGKNGMIKEMESVL RMKS QC+PD+ITFN+LIDSYG++Q FDKMEQVFK
Sbjct: 121 VYTYNGVLDAYGKNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFK 180

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           SL+ SKE+PT PTFNSMI NYG+ARL+ KAE V +KM  + + P+++T EC+I MY +CD
Sbjct: 181 SLLRSKERPTHPTFNSMITNYGRARLREKAESVVEKMEELGFKPNYVTQECLIIMYAHCD 240

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            VS+AR++FDEL      + +S+LN+MLEAYCMNGL TEAD L + +    V P+ STYK
Sbjct: 241 CVSKARQVFDELVTSQTKVHLSSLNSMLEAYCMNGLHTEADRLLDTALQQCVVPNGSTYK 300

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           LLYKAYTKAN K LVQKLLKRM + GIVPNK+FFL+ALE F +S
Sbjct: 301 LLYKAYTKANDKLLVQKLLKRMNKQGIVPNKKFFLDALEAFGTS 344


>gi|168045822|ref|XP_001775375.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673320|gb|EDQ59845.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 406

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 154/371 (41%), Positives = 217/371 (58%), Gaps = 11/371 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ+Q+WY  D G +SKLI  MGK  Q R+A+W F E++ +G RPD S+YNALITAHL   
Sbjct: 30  MQEQKWYRLDNGFHSKLIVTMGKAKQLRMAVWFFKEVKRNGHRPDTSLYNALITAHLQAE 89

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           DK    AKAL  F++MK    CKP++VTYNILLR  AQ R++ QV   F+E+    + P+
Sbjct: 90  DKRIGFAKALQLFEEMKTKANCKPDLVTYNILLRGSAQVRDILQVERFFEEMEVEKIHPN 149

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           + +YNGV+ AYGK G + +ME  L  M+     KPD +T N LI+SYG  + F KMEQVF
Sbjct: 150 LISYNGVIGAYGKAGDLVQMEKTLFTMRILKHIKPDTVTSNTLIESYGYGRDFVKMEQVF 209

Query: 180 KSLMHSKEK----PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
           KS+  +K K    P   T+N ++ +Y +    GK E+   +M A  +  +  +YE ++T 
Sbjct: 210 KSMTAAKNKQTSRPDAKTYNILMASYARLGEVGKMEWSCSRMEAANFKLNLRSYEILMTG 269

Query: 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           YG    ++   E F ++ + G   + STLNAML AYC +    EA+ L  ++      P 
Sbjct: 270 YGEVGAIASMSECFYQMLQAGMQPQKSTLNAMLRAYCKHNCFEEAEELLNDALGWQTRPR 329

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKT 355
           +S+Y +L +AY K      V+ L +RM + GI P    FLEALE+FS S    +      
Sbjct: 330 TSSYLILLRAYAKERRSSDVEMLTERMAKVGIAPCAATFLEALESFSLSCGYEEK----- 384

Query: 356 DLTRSLSTAKS 366
            LT S + A+S
Sbjct: 385 -LTESAAEAQS 394


>gi|302822123|ref|XP_002992721.1| hypothetical protein SELMODRAFT_135826 [Selaginella moellendorffii]
 gi|300139462|gb|EFJ06202.1| hypothetical protein SELMODRAFT_135826 [Selaginella moellendorffii]
          Length = 449

 Score =  261 bits (667), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 136/333 (40%), Positives = 210/333 (63%), Gaps = 4/333 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++K+I  MGK+GQ RLA W+FS+++ S  R  P V+NA+I AHL  ++ A+AL  AL +F
Sbjct: 99  HAKIIDTMGKQGQLRLASWIFSQLQLSS-RTTP-VFNAIIMAHLRCKNVARALDSALDHF 156

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL-HESILAPDIYTYNGVMDAYG 132
             MK      P++ TYN+L RACAQA   D+  ALF EL     L PD YT+NG+MDAY 
Sbjct: 157 GHMKTSVHSCPSLATYNMLTRACAQAGLTDKAEALFLELLRRDDLKPDAYTFNGIMDAYA 216

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH-SKEKPTL 191
           K G+ ++ME  L  M  +  +PD++TFN+LID+YG+   F KME+ +KSL++ S  KP+ 
Sbjct: 217 KKGLYRDMEYKLKEMSEHGVRPDLVTFNVLIDAYGRAGDFVKMERTYKSLVNLSGCKPSA 276

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            TFNSM+ +YG++R  GK E V  +M      P   T+  +++ YG    +   R+ FD+
Sbjct: 277 TTFNSMLASYGQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYGRAGELDTMRKCFDK 336

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + +     +VSTL+ +L AY  +GL  EA+ LF N+  + + P  S+Y +L+KAY +   
Sbjct: 337 MVRSPVKPQVSTLDVLLRAYAEHGLVDEAEALFINASKLDIKPAVSSYLILFKAYGEERQ 396

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            + +  L+ +MEQ+G+   + F L+ALE+++++
Sbjct: 397 LDKMTVLMSKMEQSGVESGQEFLLQALESYAAT 429



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 98/208 (47%), Gaps = 4/208 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ ++    KKG  R   +   EM   G RPD   +N LI A+     +A    K 
Sbjct: 204 DAYTFNGIMDAYAKKGLYRDMEYKLKEMSEHGVRPDLVTFNVLIDAY----GRAGDFVKM 259

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              ++ +  +  CKP+  T+N +L +  Q+R + ++  +   +  + L PD+ T+N +M 
Sbjct: 260 ERTYKSLVNLSGCKPSATTFNSMLASYGQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMS 319

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           +YG+ G +  M     +M  +  KP + T ++L+ +Y +    D+ E +F +      KP
Sbjct: 320 SYGRAGELDTMRKCFDKMVRSPVKPQVSTLDVLLRAYAEHGLVDEAEALFINASKLDIKP 379

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKM 217
            + ++  +   YG+ R   K   +  KM
Sbjct: 380 AVSSYLILFKAYGEERQLDKMTVLMSKM 407


>gi|302823876|ref|XP_002993586.1| hypothetical protein SELMODRAFT_137265 [Selaginella moellendorffii]
 gi|300138598|gb|EFJ05361.1| hypothetical protein SELMODRAFT_137265 [Selaginella moellendorffii]
          Length = 451

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 136/333 (40%), Positives = 209/333 (62%), Gaps = 4/333 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++K+I  MGK+GQ RLA W+FS+++ S  R  P V NA+I AHL  ++ A+AL  AL +F
Sbjct: 101 HAKIIDTMGKQGQLRLASWIFSQLQLSS-RTTP-VLNAIIMAHLRCKNVARALDSALDHF 158

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL-HESILAPDIYTYNGVMDAYG 132
             MK      P++ TYN+L RACAQA   D+  ALF EL     L PD YT+NG+MDAY 
Sbjct: 159 GHMKTSVHSCPSLATYNMLTRACAQAGLTDKAEALFLELLRREDLKPDAYTFNGIMDAYA 218

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH-SKEKPTL 191
           K G+ ++ME  L  M  +  +PD++TFN+LID+YG+   F KME+ +KSL++ S  KP+ 
Sbjct: 219 KKGLYRDMEYKLKEMSEHGVRPDLVTFNVLIDAYGRAGDFVKMERTYKSLVNLSGCKPSA 278

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            TFNSM+ +YG++R  GK E V  +M      P   T+  +++ YG    +   R+ FD+
Sbjct: 279 TTFNSMLASYGQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYGRAGELDTMRKCFDK 338

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + +     +VSTL+ +L AY  +GL  EA+ LF N+  + + P  S+Y +L+KAY +   
Sbjct: 339 MVRSPVKPQVSTLDVLLRAYAEHGLVDEAEALFINASKLDIKPAVSSYLILFKAYGEERQ 398

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            + +  L+ +MEQ+G+   + F L+ALE+++++
Sbjct: 399 LDKMTVLMSKMEQSGVESGQEFLLQALESYAAT 431



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 98/208 (47%), Gaps = 4/208 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ ++    KKG  R   +   EM   G RPD   +N LI A+     +A    K 
Sbjct: 206 DAYTFNGIMDAYAKKGLYRDMEYKLKEMSEHGVRPDLVTFNVLIDAY----GRAGDFVKM 261

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              ++ +  +  CKP+  T+N +L +  Q+R + ++  +   +  + L PD+ T+N +M 
Sbjct: 262 ERTYKSLVNLSGCKPSATTFNSMLASYGQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMS 321

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           +YG+ G +  M     +M  +  KP + T ++L+ +Y +    D+ E +F +      KP
Sbjct: 322 SYGRAGELDTMRKCFDKMVRSPVKPQVSTLDVLLRAYAEHGLVDEAEALFINASKLDIKP 381

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKM 217
            + ++  +   YG+ R   K   +  KM
Sbjct: 382 AVSSYLILFKAYGEERQLDKMTVLMSKM 409


>gi|168012907|ref|XP_001759143.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689842|gb|EDQ76212.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score =  254 bits (650), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 137/351 (39%), Positives = 211/351 (60%), Gaps = 10/351 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ+Q+WY  D G Y+KLI + GK    R+A+WLF+E++ SG RPD S+YNALITA+LH+R
Sbjct: 104 MQRQKWYNHDDGFYAKLIVISGKARDLRMAVWLFNEVKRSGSRPDSSLYNALITAYLHSR 163

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           DK +    A+  F+KMK   +C+PN+VTYNILLRA AQ  +V QV+  FKE+  + + PD
Sbjct: 164 DKGRGFEAAMKLFEKMKQKPKCQPNLVTYNILLRASAQLGDVVQVDRFFKEMEAAKIYPD 223

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMK-SNQCKPDIITFNLLIDSYGKRQAFDKMEQ-- 177
           + TYNGV+ AY + G   +ME  L  M+     KPD +T N LI +YG+ + F KMEQ  
Sbjct: 224 LVTYNGVIGAYAEAGDYVQMEMTLFVMRIQKHIKPDNVTSNTLIGAYGRGKDFVKMEQVV 283

Query: 178 -----VFKSLMHSKEK--PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
                V KS+  SK K  P L T+N ++ +Y +A+      + F +M    + P+F ++E
Sbjct: 284 SLFTAVLKSMTGSKSKHRPDLKTYNLLMSSYARAQDMENMLWSFSRMEEASFKPNFRSFE 343

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
            ++  +G   +  + RE F ++ +     + STLN M+ AYC +    EA+ L + +   
Sbjct: 344 ILMYGFGGVGDFEKMRECFHQMLEASIKPQTSTLNTMISAYCKHNFFEEAEELLKEALEW 403

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            + P +S+Y ++ +AY + N    +++L++RM    + P    FL++LE F
Sbjct: 404 QIHPRTSSYLIILRAYARDNRLNDMERLIERMRIADVAPVSASFLKSLEHF 454


>gi|115448703|ref|NP_001048131.1| Os02g0750400 [Oryza sativa Japonica Group]
 gi|46390206|dbj|BAD15637.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537662|dbj|BAF10045.1| Os02g0750400 [Oryza sativa Japonica Group]
          Length = 211

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 111/170 (65%), Positives = 134/170 (78%)

Query: 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
           MEQVFKSL+ SKEKPT PTFNSMI NYGKARL+ KAE V  KMT M + P+++T EC+I 
Sbjct: 1   MEQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIM 60

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
           MY YCD VSRAR+IFDEL     ++ +S++NAML+AYCMNGLP EAD L ++    G  P
Sbjct: 61  MYAYCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVP 120

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            +STYKLLYKAYTKAN K+L+QKLLKRM   GIVPNK+FFL+ALE F ++
Sbjct: 121 SASTYKLLYKAYTKANDKKLIQKLLKRMNSQGIVPNKKFFLDALEAFGNT 170



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 58/129 (44%)

Query: 108 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
           +FK L  S   P   T+N ++  YGK  + ++ E VL +M     KP+ +T   LI  Y 
Sbjct: 4   VFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYA 63

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
                 +  Q+F  L+ S+    L + N+M+  Y    L  +A+ +   +      PS  
Sbjct: 64  YCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSAS 123

Query: 228 TYECIITMY 236
           TY+ +   Y
Sbjct: 124 TYKLLYKAY 132



 Score = 45.4 bits (106), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 5/136 (3%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           +F  +  S  +P    +N++IT +     KA+   KA     KM  M   KPN VT   L
Sbjct: 4   VFKSLLRSKEKPTHPTFNSMITNY----GKARLREKAECVLDKMTEMG-FKPNYVTQECL 58

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +   A    V +   +F EL  S     + + N ++DAY  NG+  E + +L  +     
Sbjct: 59  IMMYAYCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGA 118

Query: 153 KPDIITFNLLIDSYGK 168
            P   T+ LL  +Y K
Sbjct: 119 VPSASTYKLLYKAYTK 134


>gi|449436321|ref|XP_004135941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Cucumis sativus]
 gi|449514880|ref|XP_004164505.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Cucumis sativus]
          Length = 477

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 171/331 (51%), Gaps = 5/331 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q+WY      Y+KL+ ++GK  Q   A  LF  M + G +P   VY AL++A+    
Sbjct: 117 LRQQQWYEPRCQTYTKLLMLLGKCKQPEQASLLFEIMFSEGLKPSIDVYTALVSAY---- 172

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  L KA+    +MK +  CKP++ TY+IL+  C + R  D +  +  ++    +  +
Sbjct: 173 GQSGLLHKAISTVDEMKSISDCKPDVHTYSILIDCCTRLRRFDLLKKILADMSCLGITCN 232

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             TYN +++ +GK  M ++MES+L  M +S+ C PD+ITFN  I +YG  +  +KME+ +
Sbjct: 233 TVTYNTIINGFGKAKMFEQMESLLLEMIESDSCPPDLITFNTFIRAYGNSEQIEKMEKWY 292

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           K       +P + T+NSMI +YGKA +  K + V   M    ++P+ +T   II  +G  
Sbjct: 293 KEFQLMGIEPDIWTYNSMISSYGKAGMYDKMKSVLNFMEKRFFSPTIVTMNTIIDSFGRA 352

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            N+    E F  +   G      T  +++ AY  +G   + D +     N  V PD+  +
Sbjct: 353 GNIEEMEEYFKNMKFQGMKPNSVTYCSLVNAYGKSGDLEKVDSILRQIENSDVVPDTPLF 412

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             L   Y +A     + +L   M++N  VP+
Sbjct: 413 NCLINVYGQAGNVRKMGELFLEMKENKCVPD 443



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 144/303 (47%), Gaps = 32/303 (10%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRN-SGCRPDPSVYNALITAHLHTR-----DKAKAL 66
           +Y+ L++  G+ G    A+    EM++ S C+PD   Y+ LI      R      K  A 
Sbjct: 164 VYTALVSAYGQSGLLHKAISTVDEMKSISDCKPDVHTYSILIDCCTRLRRFDLLKKILAD 223

Query: 67  AKALGY-------------------FQKMKGM-------ERCKPNIVTYNILLRACAQAR 100
              LG                    F++M+ +       + C P+++T+N  +RA   + 
Sbjct: 224 MSCLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESDSCPPDLITFNTFIRAYGNSE 283

Query: 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
            ++++   +KE     + PDI+TYN ++ +YGK GM  +M+SVL+ M+     P I+T N
Sbjct: 284 QIEKMEKWYKEFQLMGIEPDIWTYNSMISSYGKAGMYDKMKSVLNFMEKRFFSPTIVTMN 343

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
            +IDS+G+    ++ME+ FK++     KP   T+ S++  YGK+    K + + +++   
Sbjct: 344 TIIDSFGRAGNIEEMEEYFKNMKFQGMKPNSVTYCSLVNAYGKSGDLEKVDSILRQIENS 403

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
              P    + C+I +YG   NV +  E+F E+ +        T   M+ A    G+  +A
Sbjct: 404 DVVPDTPLFNCLINVYGQAGNVRKMGELFLEMKENKCVPDGITFATMIRALKAQGMTEDA 463

Query: 281 DLL 283
             L
Sbjct: 464 QRL 466



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 138/303 (45%), Gaps = 37/303 (12%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL  F  ++  +  +P   TY  LL    + +  +Q + LF+ +    L P I  Y  ++
Sbjct: 110 ALKIFGLLRQQQWYEPRCQTYTKLLMLLGKCKQPEQASLLFEIMFSEGLKPSIDVYTALV 169

Query: 129 DAYGKNGMIKEMESVLSRMKS-NQCKPDI------------------------------- 156
            AYG++G++ +  S +  MKS + CKPD+                               
Sbjct: 170 SAYGQSGLLHKAISTVDEMKSISDCKPDVHTYSILIDCCTRLRRFDLLKKILADMSCLGI 229

Query: 157 ----ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKAE 211
               +T+N +I+ +GK + F++ME +   ++ S    P L TFN+ I  YG +    K E
Sbjct: 230 TCNTVTYNTIINGFGKAKMFEQMESLLLEMIESDSCPPDLITFNTFIRAYGNSEQIEKME 289

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
             +++   M   P   TY  +I+ YG      + + + + + K      + T+N +++++
Sbjct: 290 KWYKEFQLMGIEPDIWTYNSMISSYGKAGMYDKMKSVLNFMEKRFFSPTIVTMNTIIDSF 349

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
              G   E +  F+N    G+ P+S TY  L  AY K+   E V  +L+++E + +VP+ 
Sbjct: 350 GRAGNIEEMEEYFKNMKFQGMKPNSVTYCSLVNAYGKSGDLEKVDSILRQIENSDVVPDT 409

Query: 332 RFF 334
             F
Sbjct: 410 PLF 412


>gi|297736301|emb|CBI24939.3| unnamed protein product [Vitis vinifera]
          Length = 485

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 170/344 (49%), Gaps = 5/344 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           ++KQ WY      Y+KL+ ++GK  Q   A  LF  M + G RP   VY AL++A+ H  
Sbjct: 118 LRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRPTLDVYTALVSAYGH-- 175

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
             +  L KA    + MK +  CKP++ TY+IL++ C      D +  +F E+    +   
Sbjct: 176 --SGQLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLGRFDLIERIFTEMSYLGIECS 233

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             TYN ++D YGK  M + MES L+ M +S  C PDI T N  I +YG     +KME+ +
Sbjct: 234 TVTYNTIIDGYGKADMFELMESSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEKMEKWY 293

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
                   +P + TFN +I +YGKA +  K   V + M    Y+P+ +T+  +I M+G  
Sbjct: 294 DEFQLMGIRPDIKTFNILIRSYGKACMYEKMVSVMEFMKKRFYSPTIVTFNIVIEMFGRV 353

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            N+ +  E F ++   G      T  +++ AY   G   + D +     N  VT D+  +
Sbjct: 354 GNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSILRQIENSDVTLDTPFF 413

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
             +  AY +A   E + +L   M++    P+   F   ++ +++
Sbjct: 414 NCVLSAYGQAGDVERMGELFLVMKERKCKPDNITFATMIQAYNA 457



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 124/303 (40%), Gaps = 37/303 (12%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL  F  ++     +P   TY  LL    + +  +Q + LF+ +    L P +  Y  ++
Sbjct: 111 ALKIFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRPTLDVYTALV 170

Query: 129 DAYGKNGMIKEMESVLSRMKS-NQCKPDI------------------------------- 156
            AYG +G + +    +  MKS + CKPD+                               
Sbjct: 171 SAYGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLGRFDLIERIFTEMSYLGI 230

Query: 157 ----ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKAE 211
               +T+N +ID YGK   F+ ME     ++ S    P + T NS I  YG +    K E
Sbjct: 231 ECSTVTYNTIIDGYGKADMFELMESSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEKME 290

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
             + +   M   P   T+  +I  YG      +   + + + K      + T N ++E +
Sbjct: 291 KWYDEFQLMGIRPDIKTFNILIRSYGKACMYEKMVSVMEFMKKRFYSPTIVTFNIVIEMF 350

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
              G   + +  F    + GV P+S TY  L  AY+KA   + V  +L+++E + +  + 
Sbjct: 351 GRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSILRQIENSDVTLDT 410

Query: 332 RFF 334
            FF
Sbjct: 411 PFF 413



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 34/213 (15%)

Query: 8   IADTGIYSKLIAVMGKKGQT-RLAMWLFSEMRNSGCRPDPSVYNALITAH---------- 56
           + D    +  I   G  GQ  ++  W + E +  G RPD   +N LI ++          
Sbjct: 267 LPDIFTLNSFIWAYGNSGQIEKMEKW-YDEFQLMGIRPDIKTFNILIRSYGKACMYEKMV 325

Query: 57  ---------------------LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95
                                +    +   + K   +F KMK  +  KPN +TY  L+ A
Sbjct: 326 SVMEFMKKRFYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKH-QGVKPNSITYCSLVSA 384

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
            ++A  + +V+++ +++  S +  D   +N V+ AYG+ G ++ M  +   MK  +CKPD
Sbjct: 385 YSKAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERKCKPD 444

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            ITF  +I +Y  +   +  + +  +++ +K K
Sbjct: 445 NITFATMIQAYNAQGMIEAAQNLEVNMITTKNK 477


>gi|359487410|ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Vitis vinifera]
          Length = 538

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 170/344 (49%), Gaps = 5/344 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           ++KQ WY      Y+KL+ ++GK  Q   A  LF  M + G RP   VY AL++A+ H  
Sbjct: 118 LRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRPTLDVYTALVSAYGH-- 175

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
             +  L KA    + MK +  CKP++ TY+IL++ C      D +  +F E+    +   
Sbjct: 176 --SGQLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLGRFDLIERIFTEMSYLGIECS 233

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             TYN ++D YGK  M + MES L+ M +S  C PDI T N  I +YG     +KME+ +
Sbjct: 234 TVTYNTIIDGYGKADMFELMESSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEKMEKWY 293

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
                   +P + TFN +I +YGKA +  K   V + M    Y+P+ +T+  +I M+G  
Sbjct: 294 DEFQLMGIRPDIKTFNILIRSYGKACMYEKMVSVMEFMKKRFYSPTIVTFNIVIEMFGRV 353

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            N+ +  E F ++   G      T  +++ AY   G   + D +     N  VT D+  +
Sbjct: 354 GNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSILRQIENSDVTLDTPFF 413

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
             +  AY +A   E + +L   M++    P+   F   ++ +++
Sbjct: 414 NCVLSAYGQAGDVERMGELFLVMKERKCKPDNITFATMIQAYNA 457



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 124/303 (40%), Gaps = 37/303 (12%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL  F  ++     +P   TY  LL    + +  +Q + LF+ +    L P +  Y  ++
Sbjct: 111 ALKIFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRPTLDVYTALV 170

Query: 129 DAYGKNGMIKEMESVLSRMKS-NQCKPDI------------------------------- 156
            AYG +G + +    +  MKS + CKPD+                               
Sbjct: 171 SAYGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLGRFDLIERIFTEMSYLGI 230

Query: 157 ----ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKAE 211
               +T+N +ID YGK   F+ ME     ++ S    P + T NS I  YG +    K E
Sbjct: 231 ECSTVTYNTIIDGYGKADMFELMESSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEKME 290

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
             + +   M   P   T+  +I  YG      +   + + + K      + T N ++E +
Sbjct: 291 KWYDEFQLMGIRPDIKTFNILIRSYGKACMYEKMVSVMEFMKKRFYSPTIVTFNIVIEMF 350

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
              G   + +  F    + GV P+S TY  L  AY+KA   + V  +L+++E + +  + 
Sbjct: 351 GRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSILRQIENSDVTLDT 410

Query: 332 RFF 334
            FF
Sbjct: 411 PFF 413



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 36/240 (15%)

Query: 8   IADTGIYSKLIAVMGKKGQT-RLAMWLFSEMRNSGCRPDPSVYNALITAH---------- 56
           + D    +  I   G  GQ  ++  W + E +  G RPD   +N LI ++          
Sbjct: 267 LPDIFTLNSFIWAYGNSGQIEKMEKW-YDEFQLMGIRPDIKTFNILIRSYGKACMYEKMV 325

Query: 57  ---------------------LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95
                                +    +   + K   +F KMK  +  KPN +TY  L+ A
Sbjct: 326 SVMEFMKKRFYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMK-HQGVKPNSITYCSLVSA 384

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
            ++A  + +V+++ +++  S +  D   +N V+ AYG+ G ++ M  +   MK  +CKPD
Sbjct: 385 YSKAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERKCKPD 444

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
            ITF  +I +Y  +   +  + +  +++ +K K    T     I +  A   G+ +Y F+
Sbjct: 445 NITFATMIQAYNAQGMIEAAQNLEVNMITTKNKSG--TRKEQFIGFVTASAAGEPQYCFK 502


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 164/328 (50%), Gaps = 5/328 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R  + DT  Y+ LI  +GK G+++ AM L  EM   GC PD   Y++LIT       K
Sbjct: 141 RERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGL----GK 196

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
                KA   FQ+MK   R KP+ +T+  L+ A  +A  VD    L  E+ E  + P + 
Sbjct: 197 DGETVKAFKLFQEMKRRGR-KPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVV 255

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++  +GK G + E  ++L  MK N CKPD++T++ LI    K    D+  QV K +
Sbjct: 256 TYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKM 315

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 P   T+N++I   GKA L   A  +F +M +    P  +TY  +IT  G    V
Sbjct: 316 EKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARV 375

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A  +F+E+  +G    + T  +++      G   +AD LF      G++PD  TY   
Sbjct: 376 ESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAF 435

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +  +    +  +K+ + M+++G++P+
Sbjct: 436 LNSLGRGGRFKEARKIFEDMKESGLLPD 463



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 157/335 (46%), Gaps = 7/335 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI  +GK G+T  A  LF EM+  G +PD   + AL+ A      KA  +  A
Sbjct: 183 DVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDAL----GKAGRVDDA 238

Query: 70  LGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           L    +MK  ER  KP +VTYN L+    +  ++ +   L  E+  +   PD+ TY+ ++
Sbjct: 239 LELLDEMK--ERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLI 296

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
               K   + E   VL +M+   C PD IT+N LI+  GK    +   ++F  +      
Sbjct: 297 TGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCN 356

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P + T++++I   GKA     A  +F++M ++   P   TY  IIT+ G    V  A  +
Sbjct: 357 PDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRL 416

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F E+   G    V T NA L +    G   EA  +FE+    G+ PD +TY  L    +K
Sbjct: 417 FSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSK 476

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
               +    LLK + + G   +   F E LE  +S
Sbjct: 477 TKEVDDACGLLKELIEQGCAFDSLKFDECLEILTS 511



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 149/317 (47%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + K GQ   A  LF E++ +   PD   Y+ LI    ++  +A     AL   
Sbjct: 12  YNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLI----NSLGRAGKWEAALEVV 67

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+  + CKPN+ TYN L+    +A   D+   L  E+ ++   PD+ TYN ++   GK
Sbjct: 68  AEMQA-KGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGK 126

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + E  ++ + M+   C PD  T+N LI   GK     K  ++ + +      P + T
Sbjct: 127 AGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMT 186

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           ++S+I   GK     KA  +FQ+M      P  IT+  ++   G    V  A E+ DE+ 
Sbjct: 187 YSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMK 246

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G    V T NA++  +   G   EA  L +     G  PD  TY  L     KA+  +
Sbjct: 247 ERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLD 306

Query: 314 LVQKLLKRMEQNGIVPN 330
              ++LK+ME+ G  P+
Sbjct: 307 EACQVLKKMEKEGCPPD 323



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 164/363 (45%), Gaps = 40/363 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+R    D+  ++ L+  +GK G+   A+ L  EM+  G +P    YNALI       D 
Sbjct: 211 KRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGD- 269

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L +A     +MK    CKP++VTY+ L+    +A  +D+   + K++ +    PD  
Sbjct: 270 ---LVEAYNLLDEMK-RNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTI 325

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN +++  GK G++ +   +  RMKS  C PD++T++ LI + GK    +    +F+ +
Sbjct: 326 TYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEM 385

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P L T+ S+I   GKA     A+ +F +M     +P  ITY   +   G     
Sbjct: 386 ESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRF 445

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAY------------------------------C 272
             AR+IF+++ + G    V+T +A+L                                 C
Sbjct: 446 KEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDEC 505

Query: 273 MNGLPT-----EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +  L +     EA  L + +++ G+ P +S+Y  L  A  KA         L+ +++ G 
Sbjct: 506 LEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGG 565

Query: 328 VPN 330
            P+
Sbjct: 566 KPD 568



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 150/330 (45%), Gaps = 6/330 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           ++  +W   D   YS LI  +G+ G+   A+ + +EM+  GC+P+   YN L+       
Sbjct: 35  LKAAKW-TPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLV----DCL 89

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            KA    +AL    +M+    C P++ TYN L+    +A  + +   LF E+ E    PD
Sbjct: 90  GKAGQFDEALRLLAEMRD-NGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPD 148

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            +TYN ++   GK G  ++   +L  M+ + C PD++T++ LI   GK     K  ++F+
Sbjct: 149 TFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQ 208

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +     KP   TF +++   GKA     A  +  +M      P  +TY  +I  +G   
Sbjct: 209 EMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVG 268

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           ++  A  + DE+ + G    V T + ++          EA  + +     G  PD+ TY 
Sbjct: 269 DLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYN 328

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            L     KA +     +L  RM+  G  P+
Sbjct: 329 TLINGLGKAGLLNDAGRLFDRMKSKGCNPD 358



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 154/328 (46%), Gaps = 11/328 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI  + K  Q   A  +  +M   GC PD   YN LI        KA  L  A
Sbjct: 288 DVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGL----GKAGLLNDA 343

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F +MK  + C P++VTY+ L+ A  +A  V+    LF+E+    + PD++TY  ++ 
Sbjct: 344 GRLFDRMKS-KGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIIT 402

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
             GK G + + + + S M+     PD+IT+N  ++S G+   F +  ++F+ +  S   P
Sbjct: 403 VLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLP 462

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY-EC--IITMYGYCDNVSRAR 246
            + T++++++   K +    A  + +++         + + EC  I+T +G   NV  A 
Sbjct: 463 DVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWG---NVDEAH 519

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+    +  G     S+ NA+++A    G  +EA    E+    G  PD  +Y  L  A 
Sbjct: 520 ELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISAL 579

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFF 334
            +    +   +LL+ M + G+  + R +
Sbjct: 580 GQTGQIDTAFELLEEMSKRGLKLSPRSY 607



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 128/255 (50%), Gaps = 2/255 (0%)

Query: 76  MKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG 135
           MKG     PN+VTYN LL A A+A   ++   LF+EL  +   PD+ +Y+ ++++ G+ G
Sbjct: 1   MKGFP--SPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAG 58

Query: 136 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195
             +    V++ M++  CKP++ T+N L+D  GK   FD+  ++   +  +   P + T+N
Sbjct: 59  KWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYN 118

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
            +I   GKA    +A  +F +M      P   TY  +I   G      +A E+ +E+ + 
Sbjct: 119 CLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERH 178

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
           G    V T ++++     +G   +A  LF+     G  PDS T+  L  A  KA   +  
Sbjct: 179 GCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDA 238

Query: 316 QKLLKRMEQNGIVPN 330
            +LL  M++ G+ P 
Sbjct: 239 LELLDEMKERGVKPG 253


>gi|356527376|ref|XP_003532287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Glycine max]
          Length = 515

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 178/343 (51%), Gaps = 5/343 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           + +Q WY  DTG+Y KLI ++GK  Q   A  LF  M + GC  D   Y AL++A+    
Sbjct: 147 LHEQIWYKPDTGVYIKLIVMLGKCKQPEKAHELFQAMVDEGCVLDCESYTALLSAY---- 202

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  L KA    ++MK    C+P++ TY+ILL++C Q    D++ +L  ++    + P+
Sbjct: 203 SRSGLLDKAFSLLEEMKNTPGCQPDVQTYSILLKSCLQVFAFDKIQSLLSDMTNRGIKPN 262

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             TYN ++DAYGK     EMES+L  M +++ C+PD+ T N  + ++G     + ME+ +
Sbjct: 263 TVTYNTLIDAYGKARKFSEMESILVEMLADRYCQPDVWTMNSTLRAFGNIGQIETMEKCY 322

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           +   ++  +P + TFN ++ +YGKA+   K   V + M    Y+ + +T+  +I  +G  
Sbjct: 323 EKFQNAGIQPNVQTFNILLDSYGKAQDYKKMSAVMEYMQKYHYSWTIVTFNIVIDAFGKA 382

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            ++ +   +F  +          TL +++ AY   G P +   +     N  V  D+  +
Sbjct: 383 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYARAGKPEKISGVLRFVENSDVLLDTVFF 442

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
             L  AY +      ++ +L+ M+QNG  P+   +   ++T++
Sbjct: 443 NCLVDAYARLGCLAEMKGVLEMMKQNGCKPDIVTYRTMIKTYT 485



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 137/315 (43%), Gaps = 37/315 (11%)

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
           LH R  A     AL  F+ +      KP+   Y  L+    + +  ++ + LF+ + +  
Sbjct: 128 LHERVTALRWESALKVFELLHEQIWYKPDTGVYIKLIVMLGKCKQPEKAHELFQAMVDEG 187

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKM 175
              D  +Y  ++ AY ++G++ +  S+L  MK+   C+PD+ T+++L+ S  +  AFDK+
Sbjct: 188 CVLDCESYTALLSAYSRSGLLDKAFSLLEEMKNTPGCQPDVQTYSILLKSCLQVFAFDKI 247

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT------------ 223
           + +   + +   KP   T+N++I  YGKAR   + E +  +M A +Y             
Sbjct: 248 QSLLSDMTNRGIKPNTVTYNTLIDAYGKARKFSEMESILVEMLADRYCQPDVWTMNSTLR 307

Query: 224 ------------------------PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
                                   P+  T+  ++  YG   +  +   + + + K     
Sbjct: 308 AFGNIGQIETMEKCYEKFQNAGIQPNVQTFNILLDSYGKAQDYKKMSAVMEYMQKYHYSW 367

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            + T N +++A+   G   + + LF    +  + P   T   L +AY +A   E +  +L
Sbjct: 368 TIVTFNIVIDAFGKAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYARAGKPEKISGVL 427

Query: 320 KRMEQNGIVPNKRFF 334
           + +E + ++ +  FF
Sbjct: 428 RFVENSDVLLDTVFF 442


>gi|224104097|ref|XP_002313317.1| predicted protein [Populus trichocarpa]
 gi|222849725|gb|EEE87272.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 169/344 (49%), Gaps = 5/344 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           ++KQ WY   T  Y+KL+ ++GK  Q     +LF  M + G +P   VY AL++A+    
Sbjct: 105 LRKQHWYEPRTKTYTKLLMMLGKCRQPEEGSFLFEVMLSDGLKPTIDVYTALVSAY---- 160

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K+  L KA     +MK +  CKP++ TY+IL+  C +    + +  +  E+    +   
Sbjct: 161 GKSGQLDKAFSIVVEMKAISECKPDVYTYSILINCCIKLHRFELIRGILAEMSYLGIECS 220

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             TYN ++D YGK  M +EME+ L+ M +S    PD+ TFN +I +YG +   DKME+ +
Sbjct: 221 TVTYNTIIDGYGKAKMFEEMENTLTDMIESGSSVPDLFTFNSIIGAYGSKGRIDKMEKWY 280

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
                   +  + TFN +I +YGKA + GK   V + M    ++PS +T+   I  +G  
Sbjct: 281 TEFQLMGLRQDIKTFNILIRSYGKAGMYGKMRSVLEFMEKRFFSPSIVTHNIFIETFGKA 340

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            ++    E F ++  LG      T  +++ AY   G   + D +     N  V  D+  +
Sbjct: 341 GDIETMEEYFSKMKHLGIKPNTVTYCSLVSAYSKAGHIMKVDSILRQVENSDVILDTPFF 400

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
             +  AY +A   E + +L   ME     P+   F   ++ +++
Sbjct: 401 NCVISAYGRAGDIEKMSELFLGMEGRKCKPDSITFATMIQAYNA 444



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 131/278 (47%), Gaps = 2/278 (0%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL  F+ ++     +P   TY  LL    + R  ++ + LF+ +    L P I  Y  ++
Sbjct: 98  ALKIFELLRKQHWYEPRTKTYTKLLMMLGKCRQPEEGSFLFEVMLSDGLKPTIDVYTALV 157

Query: 129 DAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
            AYGK+G + +  S++  MK+ ++CKPD+ T+++LI+   K   F+ +  +   + +   
Sbjct: 158 SAYGKSGQLDKAFSIVVEMKAISECKPDVYTYSILINCCIKLHRFELIRGILAEMSYLGI 217

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMT-AMKYTPSFITYECIITMYGYCDNVSRAR 246
           + +  T+N++I  YGKA++  + E     M  +    P   T+  II  YG    + +  
Sbjct: 218 ECSTVTYNTIIDGYGKAKMFEEMENTLTDMIESGSSVPDLFTFNSIIGAYGSKGRIDKME 277

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           + + E   +G    + T N ++ +Y   G+  +   + E       +P   T+ +  + +
Sbjct: 278 KWYTEFQLMGLRQDIKTFNILIRSYGKAGMYGKMRSVLEFMEKRFFSPSIVTHNIFIETF 337

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            KA   E +++   +M+  GI PN   +   +  +S +
Sbjct: 338 GKAGDIETMEEYFSKMKHLGIKPNTVTYCSLVSAYSKA 375


>gi|255556562|ref|XP_002519315.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541630|gb|EEF43179.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 491

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 169/333 (50%), Gaps = 9/333 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL--H 58
           +++Q +Y    G Y KL+ ++G+ GQ + A  LF EM   G  P   +Y AL+ A+   H
Sbjct: 120 LKEQPFYHPKEGTYMKLLVLLGRTGQPQRAHQLFDEMVEEGIEPTAELYTALLAAYCRNH 179

Query: 59  TRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
             D+A ++       Q+MK + RC P++ TY+ LL+AC  A   + V AL++E+ E ++ 
Sbjct: 180 LTDEAFSI------LQQMKTLPRCLPDVYTYSTLLKACVDASRFELVEALYQEMGERLIT 233

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
           P+  T N V+  YGK GM  +ME VLS M +S +CKPD+ T N+++  +G +   D ME+
Sbjct: 234 PNTVTQNIVLSGYGKAGMYDQMERVLSGMLESTECKPDVWTMNIILSVFGNKGQIDLMEK 293

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
            ++       +P   TFN +I  YGK R+  K   V + M  +++  +  TY  +I  + 
Sbjct: 294 WYEKFRSFGIEPETRTFNILIGAYGKKRMYDKMSSVMEFMRKLQFPWTTSTYNNVIEAFA 353

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
              +V      FD++   G      T   ++  Y   GL  +     + +    +  +++
Sbjct: 354 VAGDVKHMEYTFDQMRAEGMKADTKTFCCLINGYANAGLFHKVISSVQLATKFEIPENTT 413

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            Y  +  A  KA     ++++ KRM+ N   P+
Sbjct: 414 FYNAIISACAKAEDLMEMERVFKRMKDNQCQPD 446



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 118/296 (39%), Gaps = 37/296 (12%)

Query: 53  ITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL 112
           +T  L  R   K   +AL  F+ +K      P   TY  LL    +     + + LF E+
Sbjct: 97  VTEALSDRILKKQWFQALEVFEMLKEQPFYHPKEGTYMKLLVLLGRTGQPQRAHQLFDEM 156

Query: 113 HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITF------------ 159
            E  + P    Y  ++ AY +N +  E  S+L +MK+  +C PD+ T+            
Sbjct: 157 VEEGIEPTAELYTALLAAYCRNHLTDEAFSILQQMKTLPRCLPDVYTYSTLLKACVDASR 216

Query: 160 -----------------------NLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFN 195
                                  N+++  YGK   +D+ME+V   ++ S E KP + T N
Sbjct: 217 FELVEALYQEMGERLITPNTVTQNIVLSGYGKAGMYDQMERVLSGMLESTECKPDVWTMN 276

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
            ++  +G        E  ++K  +    P   T+  +I  YG      +   + + + KL
Sbjct: 277 IILSVFGNKGQIDLMEKWYEKFRSFGIEPETRTFNILIGAYGKKRMYDKMSSVMEFMRKL 336

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
                 ST N ++EA+ + G     +  F+     G+  D+ T+  L   Y  A +
Sbjct: 337 QFPWTTSTYNNVIEAFAVAGDVKHMEYTFDQMRAEGMKADTKTFCCLINGYANAGL 392


>gi|449443726|ref|XP_004139628.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Cucumis sativus]
          Length = 456

 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 165/332 (49%), Gaps = 5/332 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q WY    G+Y KLI ++GK  Q   A  LF EM   GC      Y AL++A+    
Sbjct: 90  LREQLWYRPYAGMYIKLIVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAY---- 145

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  L +A     +MK    C+P++ TY+IL+++C Q    ++   L  ++    + P+
Sbjct: 146 SRSGLLDEAFSILNEMKNSPDCQPDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKPN 205

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             TYN  +DAYGK  M  EMES+L  M   + CKPD+ T N  + ++G+    + ME+ +
Sbjct: 206 TITYNTFIDAYGKAKMFAEMESILVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETMEKCY 265

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           +    +  +P++ TFN ++ +YGKA    K   V + M    Y+ + +TY  +I  +G  
Sbjct: 266 EKFQEAGIQPSIQTFNILLDSYGKAESYEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 325

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            N+ +   +F  +          TL +++ AY   G   + D +     N  +  D+  Y
Sbjct: 326 GNLKQMEHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKIDSVLNLVENSDIMLDTVFY 385

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             L  AY +      ++K+L  MEQ G  P+K
Sbjct: 386 NCLVDAYGRLECFAEMKKVLGMMEQRGCKPDK 417



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 128/271 (47%), Gaps = 4/271 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI    +      A  L S+M   G +P+   YN  I A+     KAK  A+ 
Sbjct: 170 DVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKPNTITYNTFIDAY----GKAKMFAEM 225

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                 M   + CKP++ T N  LRA  ++  ++ +   +++  E+ + P I T+N ++D
Sbjct: 226 ESILVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETMEKCYEKFQEAGIQPSIQTFNILLD 285

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           +YGK    ++M +V+  M+       I+T+N++ID++G+     +ME +F+ +   + KP
Sbjct: 286 SYGKAESYEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGNLKQMEHLFRLMRSERIKP 345

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           +  T  S++  YG+A  + K + V   +         + Y C++  YG  +  +  +++ 
Sbjct: 346 SCVTLCSLVRAYGQAGKREKIDSVLNLVENSDIMLDTVFYNCLVDAYGRLECFAEMKKVL 405

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
             + + G     +T   M  AY   G+   A
Sbjct: 406 GMMEQRGCKPDKTTYRTMARAYSDGGMANHA 436



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 133/315 (42%), Gaps = 37/315 (11%)

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
           LH R        AL  F+ ++     +P    Y  L+    + +  ++   LF+E+ E  
Sbjct: 71  LHDRITTLRWESALKVFELLREQLWYRPYAGMYIKLIVMLGKCKQQEKAYELFQEMIEEG 130

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK-SNQCKPDI------------------- 156
                 +Y  ++ AY ++G++ E  S+L+ MK S  C+PD+                   
Sbjct: 131 CEVSHESYTALLSAYSRSGLLDEAFSILNEMKNSPDCQPDVHTYSILIKSCLQVFAFNKA 190

Query: 157 ----------------ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMII 199
                           IT+N  ID+YGK + F +ME +   +++    KP + T NS + 
Sbjct: 191 QTLLSDMVTRGIKPNTITYNTFIDAYGKAKMFAEMESILVDMLNDDGCKPDVWTMNSTLR 250

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
            +G++      E  ++K       PS  T+  ++  YG  ++  +   + + + K     
Sbjct: 251 AFGRSGQLETMEKCYEKFQEAGIQPSIQTFNILLDSYGKAESYEKMSAVMEYMQKYHYSW 310

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            + T N +++A+   G   + + LF    +  + P   T   L +AY +A  +E +  +L
Sbjct: 311 TIVTYNIVIDAFGRAGNLKQMEHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKIDSVL 370

Query: 320 KRMEQNGIVPNKRFF 334
             +E + I+ +  F+
Sbjct: 371 NLVENSDIMLDTVFY 385



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 115/249 (46%), Gaps = 24/249 (9%)

Query: 10  DTGIYSKLIAVMGK-KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           +T  Y+  I   GK K    +   L   + + GC+PD    N+ +              +
Sbjct: 205 NTITYNTFIDAYGKAKMFAEMESILVDMLNDDGCKPDVWTMNSTL--------------R 250

Query: 69  ALGYFQKMKGMERC---------KPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
           A G   +++ ME+C         +P+I T+NILL +  +A + ++++A+ + + +   + 
Sbjct: 251 AFGRSGQLETMEKCYEKFQEAGIQPSIQTFNILLDSYGKAESYEKMSAVMEYMQKYHYSW 310

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
            I TYN V+DA+G+ G +K+ME +   M+S + KP  +T   L+ +YG+    +K++ V 
Sbjct: 311 TIVTYNIVIDAFGRAGNLKQMEHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKIDSVL 370

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             + +S        +N ++  YG+     + + V   M      P   TY  +   Y   
Sbjct: 371 NLVENSDIMLDTVFYNCLVDAYGRLECFAEMKKVLGMMEQRGCKPDKTTYRTMARAYSDG 430

Query: 240 DNVSRAREI 248
              + A+EI
Sbjct: 431 GMANHAKEI 439



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 101/209 (48%), Gaps = 5/209 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D    +  +   G+ GQ       + + + +G +P    +N L+ ++       K ++  
Sbjct: 241 DVWTMNSTLRAFGRSGQLETMEKCYEKFQEAGIQPSIQTFNILLDSYGKAESYEK-MSAV 299

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           + Y QK          IVTYNI++ A  +A N+ Q+  LF+ +    + P   T   ++ 
Sbjct: 300 MEYMQKY----HYSWTIVTYNIVIDAFGRAGNLKQMEHLFRLMRSERIKPSCVTLCSLVR 355

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           AYG+ G  ++++SVL+ ++++    D + +N L+D+YG+ + F +M++V   +     KP
Sbjct: 356 AYGQAGKREKIDSVLNLVENSDIMLDTVFYNCLVDAYGRLECFAEMKKVLGMMEQRGCKP 415

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMT 218
              T+ +M   Y    +   A+ + + +T
Sbjct: 416 DKTTYRTMARAYSDGGMANHAKEIQELIT 444


>gi|356552149|ref|XP_003544432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Glycine max]
          Length = 481

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 172/344 (50%), Gaps = 5/344 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           ++KQ WY      Y+KL+ ++GK  Q   A  LF  M + G +P   VY AL++A+    
Sbjct: 114 LRKQYWYQPRCRTYAKLLMMLGKCRQPEEASLLFEIMLSEGLKPTVDVYTALVSAY---- 169

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  L +A    + MK +  C+P++ TY+IL+R CA+ R  D +  +  E+    +  +
Sbjct: 170 GQSGLLDQAFSTVEDMKSVVDCEPDVYTYSILIRCCAKFRRFDLIEHVLAEMSYLGIKCN 229

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSN-QCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             TYN ++D YGK  M ++M+  L+ M  N    PD+ T N  + +YG     DKME+ +
Sbjct: 230 CVTYNSIIDGYGKASMFEQMDDALNDMIENGNSHPDVFTLNSFVGAYGNAGQIDKMEKWY 289

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
                   KP + TFN+MI +YGKA +  K + V   M    +TP+ +TY  +I ++G  
Sbjct: 290 DEFQLMGIKPDITTFNTMIKSYGKAGMYEKMKTVMDFMEKRFFTPTIVTYNTVIEVFGKA 349

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             + +  + F ++  LG      T  +++ AY   G   + D +  +  N  V  D+  +
Sbjct: 350 GEIEKMDQHFLKMKHLGVKPNSITYCSLVSAYSKVGCIDKVDSIMRHVENSDVVLDTPFF 409

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
             +  AY +A   + + +L   M +    P+   F   ++++++
Sbjct: 410 NCIISAYGQAGNLKKMGELFLAMRERKCEPDNITFACMIQSYNT 453



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 126/276 (45%), Gaps = 2/276 (0%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL  F  ++     +P   TY  LL    + R  ++ + LF+ +    L P +  Y  ++
Sbjct: 107 ALEIFALLRKQYWYQPRCRTYAKLLMMLGKCRQPEEASLLFEIMLSEGLKPTVDVYTALV 166

Query: 129 DAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
            AYG++G++ +  S +  MKS   C+PD+ T+++LI    K + FD +E V   + +   
Sbjct: 167 SAYGQSGLLDQAFSTVEDMKSVVDCEPDVYTYSILIRCCAKFRRFDLIEHVLAEMSYLGI 226

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT-PSFITYECIITMYGYCDNVSRAR 246
           K    T+NS+I  YGKA +  + +     M     + P   T    +  YG    + +  
Sbjct: 227 KCNCVTYNSIIDGYGKASMFEQMDDALNDMIENGNSHPDVFTLNSFVGAYGNAGQIDKME 286

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           + +DE   +G    ++T N M+++Y   G+  +   + +       TP   TY  + + +
Sbjct: 287 KWYDEFQLMGIKPDITTFNTMIKSYGKAGMYEKMKTVMDFMEKRFFTPTIVTYNTVIEVF 346

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            KA   E + +   +M+  G+ PN   +   +  +S
Sbjct: 347 GKAGEIEKMDQHFLKMKHLGVKPNSITYCSLVSAYS 382



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 16/189 (8%)

Query: 4   QRWYI--------ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA 55
           ++WY          D   ++ +I   GK G       +   M      P    YN +I  
Sbjct: 286 EKWYDEFQLMGIKPDITTFNTMIKSYGKAGMYEKMKTVMDFMEKRFFTPTIVTYNTVIEV 345

Query: 56  HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 115
                 KA  + K   +F KMK +   KPN +TY  L+ A ++   +D+V+++ + +  S
Sbjct: 346 F----GKAGEIEKMDQHFLKMKHLG-VKPNSITYCSLVSAYSKVGCIDKVDSIMRHVENS 400

Query: 116 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY---GKRQAF 172
            +  D   +N ++ AYG+ G +K+M  +   M+  +C+PD ITF  +I SY   G  +A 
Sbjct: 401 DVVLDTPFFNCIISAYGQAGNLKKMGELFLAMRERKCEPDNITFACMIQSYNTQGMTEAV 460

Query: 173 DKMEQVFKS 181
             +E +  S
Sbjct: 461 QNLENMMIS 469


>gi|449475395|ref|XP_004154439.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Cucumis sativus]
          Length = 511

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 165/332 (49%), Gaps = 5/332 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q WY    G+Y KLI ++GK  Q   A  LF EM   GC      Y AL++A+    
Sbjct: 145 LREQLWYRPYAGMYIKLIVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAY---- 200

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  L +A     +MK    C+P++ TY+IL+++C Q    ++   L  ++    + P+
Sbjct: 201 SRSGLLDEAFSILNEMKNSPDCQPDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKPN 260

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             TYN  +DAYGK  M  EMES+L  M   + CKPD+ T N  + ++G+    + ME+ +
Sbjct: 261 TITYNTFIDAYGKAKMFAEMESILVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETMEKCY 320

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           +    +  +P++ TFN ++ +YGKA    K   V + M    Y+ + +TY  +I  +G  
Sbjct: 321 EKFQEAGIQPSIQTFNILLDSYGKAESYEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 380

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            N+ +   +F  +          TL +++ AY   G   + D +     N  +  D+  Y
Sbjct: 381 GNLKQMEHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKIDSVLNLVENSDIMLDTVFY 440

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             L  AY +      ++K+L  MEQ G  P+K
Sbjct: 441 NCLVDAYGRLECFAEMKKVLGMMEQRGCKPDK 472



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 128/271 (47%), Gaps = 4/271 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI    +      A  L S+M   G +P+   YN  I A+     KAK  A+ 
Sbjct: 225 DVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKPNTITYNTFIDAY----GKAKMFAEM 280

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                 M   + CKP++ T N  LRA  ++  ++ +   +++  E+ + P I T+N ++D
Sbjct: 281 ESILVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETMEKCYEKFQEAGIQPSIQTFNILLD 340

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           +YGK    ++M +V+  M+       I+T+N++ID++G+     +ME +F+ +   + KP
Sbjct: 341 SYGKAESYEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGNLKQMEHLFRLMRSERIKP 400

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           +  T  S++  YG+A  + K + V   +         + Y C++  YG  +  +  +++ 
Sbjct: 401 SCVTLCSLVRAYGQAGKREKIDSVLNLVENSDIMLDTVFYNCLVDAYGRLECFAEMKKVL 460

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
             + + G     +T   M  AY   G+   A
Sbjct: 461 GMMEQRGCKPDKTTYRTMARAYSDGGMANHA 491



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 133/315 (42%), Gaps = 37/315 (11%)

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
           LH R        AL  F+ ++     +P    Y  L+    + +  ++   LF+E+ E  
Sbjct: 126 LHDRITTLRWESALKVFELLREQLWYRPYAGMYIKLIVMLGKCKQQEKAYELFQEMIEEG 185

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK-SNQCKPDI------------------- 156
                 +Y  ++ AY ++G++ E  S+L+ MK S  C+PD+                   
Sbjct: 186 CEVSHESYTALLSAYSRSGLLDEAFSILNEMKNSPDCQPDVHTYSILIKSCLQVFAFNKA 245

Query: 157 ----------------ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMII 199
                           IT+N  ID+YGK + F +ME +   +++    KP + T NS + 
Sbjct: 246 QTLLSDMVTRGIKPNTITYNTFIDAYGKAKMFAEMESILVDMLNDDGCKPDVWTMNSTLR 305

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
            +G++      E  ++K       PS  T+  ++  YG  ++  +   + + + K     
Sbjct: 306 AFGRSGQLETMEKCYEKFQEAGIQPSIQTFNILLDSYGKAESYEKMSAVMEYMQKYHYSW 365

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            + T N +++A+   G   + + LF    +  + P   T   L +AY +A  +E +  +L
Sbjct: 366 TIVTYNIVIDAFGRAGNLKQMEHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKIDSVL 425

Query: 320 KRMEQNGIVPNKRFF 334
             +E + I+ +  F+
Sbjct: 426 NLVENSDIMLDTVFY 440



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 115/249 (46%), Gaps = 24/249 (9%)

Query: 10  DTGIYSKLIAVMGK-KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           +T  Y+  I   GK K    +   L   + + GC+PD    N+ +              +
Sbjct: 260 NTITYNTFIDAYGKAKMFAEMESILVDMLNDDGCKPDVWTMNSTL--------------R 305

Query: 69  ALGYFQKMKGMERC---------KPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
           A G   +++ ME+C         +P+I T+NILL +  +A + ++++A+ + + +   + 
Sbjct: 306 AFGRSGQLETMEKCYEKFQEAGIQPSIQTFNILLDSYGKAESYEKMSAVMEYMQKYHYSW 365

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
            I TYN V+DA+G+ G +K+ME +   M+S + KP  +T   L+ +YG+    +K++ V 
Sbjct: 366 TIVTYNIVIDAFGRAGNLKQMEHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKIDSVL 425

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             + +S        +N ++  YG+     + + V   M      P   TY  +   Y   
Sbjct: 426 NLVENSDIMLDTVFYNCLVDAYGRLECFAEMKKVLGMMEQRGCKPDKTTYRTMARAYSDG 485

Query: 240 DNVSRAREI 248
              + A+EI
Sbjct: 486 GMANHAKEI 494



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 101/209 (48%), Gaps = 5/209 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D    +  +   G+ GQ       + + + +G +P    +N L+ ++       K ++  
Sbjct: 296 DVWTMNSTLRAFGRSGQLETMEKCYEKFQEAGIQPSIQTFNILLDSYGKAESYEK-MSAV 354

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           + Y QK          IVTYNI++ A  +A N+ Q+  LF+ +    + P   T   ++ 
Sbjct: 355 MEYMQKY----HYSWTIVTYNIVIDAFGRAGNLKQMEHLFRLMRSERIKPSCVTLCSLVR 410

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           AYG+ G  ++++SVL+ ++++    D + +N L+D+YG+ + F +M++V   +     KP
Sbjct: 411 AYGQAGKREKIDSVLNLVENSDIMLDTVFYNCLVDAYGRLECFAEMKKVLGMMEQRGCKP 470

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMT 218
              T+ +M   Y    +   A+ + + +T
Sbjct: 471 DKTTYRTMARAYSDGGMANHAKEIQELIT 499


>gi|224069810|ref|XP_002303045.1| predicted protein [Populus trichocarpa]
 gi|222844771|gb|EEE82318.1| predicted protein [Populus trichocarpa]
          Length = 388

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 171/343 (49%), Gaps = 5/343 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q WY    G+Y KLI ++GK  Q   A  LF  M + GC      Y AL++A+    
Sbjct: 20  LREQLWYRPYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAY---- 75

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++    KA    ++MK    C+P++ TY+IL+++C Q    D+V  L  ++    + P+
Sbjct: 76  GRSGLFDKAFSIMEEMKNTPDCRPDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIRPN 135

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             TYN V+DAYGK  M  EME+ L  M S Q C+PD+ T N  I ++G     + ME  +
Sbjct: 136 TVTYNTVIDAYGKAKMFAEMEATLMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENCY 195

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           +    +  +P + TFN ++ +YGKA    K   V + M    Y+ + +TY  +I  +G  
Sbjct: 196 EKFQSAGIEPNIKTFNILLDSYGKAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDAFGRA 255

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            ++ +   +F  +          TL +++ AY   G P +   +     N  VT D+  +
Sbjct: 256 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYREAGKPEKIGSVLRFIENSDVTLDTVFF 315

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
             L  AY +      ++++L+ ME+ G  P+K  +   ++ +S
Sbjct: 316 NCLVDAYGRLECFAEMKEVLELMEEKGCKPDKVTYRTMIKAYS 358



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 127/248 (51%), Gaps = 4/248 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           L S+M + G RP+   YN +I A+     KAK  A+      +M   + C+P++ T N  
Sbjct: 123 LLSDMESLGIRPNTVTYNTVIDAY----GKAKMFAEMEATLMEMLSQQDCEPDVWTMNST 178

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +RA   +  ++ +   +++   + + P+I T+N ++D+YGK G  ++M +V+  M+    
Sbjct: 179 IRAFGGSGQMEMMENCYEKFQSAGIEPNIKTFNILLDSYGKAGNYQKMSAVMEYMQRYHY 238

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
              I+T+N++ID++G+     +ME +F+ +   + KP+  T  S++  Y +A    K   
Sbjct: 239 SWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYREAGKPEKIGS 298

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           V + +     T   + + C++  YG  +  +  +E+ + + + G      T   M++AY 
Sbjct: 299 VLRFIENSDVTLDTVFFNCLVDAYGRLECFAEMKEVLELMEEKGCKPDKVTYRTMIKAYS 358

Query: 273 MNGLPTEA 280
           + G+ + A
Sbjct: 359 IKGMTSHA 366



 Score = 45.1 bits (105), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 8/188 (4%)

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           LI   GK +  DK  Q+F++++      T  ++ +++  YG++ L  KA   F  M  MK
Sbjct: 36  LIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAYGRSGLFDKA---FSIMEEMK 92

Query: 222 YTPS----FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
            TP       TY  +I          + + +  ++  LG      T N +++AY    + 
Sbjct: 93  NTPDCRPDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIRPNTVTYNTVIDAYGKAKMF 152

Query: 278 TEAD-LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
            E +  L E        PD  T     +A+  +   E+++   ++ +  GI PN + F  
Sbjct: 153 AEMEATLMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENCYEKFQSAGIEPNIKTFNI 212

Query: 337 ALETFSSS 344
            L+++  +
Sbjct: 213 LLDSYGKA 220


>gi|115466680|ref|NP_001056939.1| Os06g0172000 [Oryza sativa Japonica Group]
 gi|55773690|dbj|BAD72273.1| putative PPR2 [Oryza sativa Japonica Group]
 gi|113594979|dbj|BAF18853.1| Os06g0172000 [Oryza sativa Japonica Group]
 gi|215697063|dbj|BAG91057.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218197679|gb|EEC80106.1| hypothetical protein OsI_21852 [Oryza sativa Indica Group]
 gi|222635046|gb|EEE65178.1| hypothetical protein OsJ_20289 [Oryza sativa Japonica Group]
          Length = 511

 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 164/331 (49%), Gaps = 4/331 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+ Q WY    GIY KLI ++GK  Q   A  LF  M + GC P+   Y AL++A+    
Sbjct: 150 MRDQVWYRPYVGIYVKLITMLGKCKQPERAHELFQAMVDEGCAPNLESYTALVSAY---- 205

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++    +A    ++MK    C+P++ TY+IL+++C  A + ++V  L +++  + + P+
Sbjct: 206 SRSGRFDRAFSLLEQMKATPGCRPDVQTYSILIKSCLHAYDFERVKYLMEDMARAGIRPN 265

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TYN ++DAYGK G   EMES L  M +  CKPD+ T N  + ++G     + ME  ++
Sbjct: 266 VVTYNTLIDAYGKAGRFAEMESTLLEMLTENCKPDVWTMNSTLRAFGGSGQIETMESCYE 325

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
               S   P + T+N ++ +YGKA++  K   V + M    Y+ + +TY  +I  +G   
Sbjct: 326 KFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAG 385

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           ++ +   IF  +          TL +++ AY   G   +   +     N  +T D   + 
Sbjct: 386 DLEQMEYIFRLMKSERIKPNCVTLCSLVRAYGRAGDVKKIKTVLRIVENSDITLDIVFFN 445

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
            L  A+ +      +  +L  M+     P+K
Sbjct: 446 CLVDAFGRVGCLAEMWDVLDIMKLQRCKPDK 476



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 136/321 (42%), Gaps = 36/321 (11%)

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
           LH R  A     AL  F  M+     +P +  Y  L+    + +  ++ + LF+ + +  
Sbjct: 131 LHERITALRWDSALKVFDLMRDQVWYRPYVGIYVKLITMLGKCKQPERAHELFQAMVDEG 190

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPD-------------------- 155
            AP++ +Y  ++ AY ++G      S+L +MK+   C+PD                    
Sbjct: 191 CAPNLESYTALVSAYSRSGRFDRAFSLLEQMKATPGCRPDVQTYSILIKSCLHAYDFERV 250

Query: 156 ---------------IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
                          ++T+N LID+YGK   F +ME     ++    KP + T NS +  
Sbjct: 251 KYLMEDMARAGIRPNVVTYNTLIDAYGKAGRFAEMESTLLEMLTENCKPDVWTMNSTLRA 310

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
           +G +      E  ++K  A   +P+  TY  ++  YG      +   + + + K      
Sbjct: 311 FGGSGQIETMESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWT 370

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           + T N +++A+   G   + + +F    +  + P+  T   L +AY +A   + ++ +L+
Sbjct: 371 IVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSLVRAYGRAGDVKKIKTVLR 430

Query: 321 RMEQNGIVPNKRFFLEALETF 341
            +E + I  +  FF   ++ F
Sbjct: 431 IVENSDITLDIVFFNCLVDAF 451



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 107/232 (46%), Gaps = 23/232 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI   GK G+         EM    C+PD    N+ +              +A G  
Sbjct: 269 YNTLIDAYGKAGRFAEMESTLLEMLTENCKPDVWTMNSTL--------------RAFGGS 314

Query: 74  QKMKGMERC---------KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            +++ ME C          PNI TYNILL +  +A+  +++ A+ + + +   +  I TY
Sbjct: 315 GQIETMESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTY 374

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N V+DA+G+ G +++ME +   MKS + KP+ +T   L+ +YG+     K++ V + + +
Sbjct: 375 NVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSLVRAYGRAGDVKKIKTVLRIVEN 434

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           S     +  FN ++  +G+     +   V   M   +  P  +T   +I  +
Sbjct: 435 SDITLDIVFFNCLVDAFGRVGCLAEMWDVLDIMKLQRCKPDKVTCTTMIKWF 486



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 5/143 (3%)

Query: 49  YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL 108
           YN +I A      +A  L +    F+ MK  ER KPN VT   L+RA  +A +V ++  +
Sbjct: 374 YNVVIDAF----GRAGDLEQMEYIFRLMKS-ERIKPNCVTLCSLVRAYGRAGDVKKIKTV 428

Query: 109 FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
            + +  S +  DI  +N ++DA+G+ G + EM  VL  MK  +CKPD +T   +I  +  
Sbjct: 429 LRIVENSDITLDIVFFNCLVDAFGRVGCLAEMWDVLDIMKLQRCKPDKVTCTTMIKWFLI 488

Query: 169 RQAFDKMEQVFKSLMHSKEKPTL 191
           +   D   Q  + L   + K  +
Sbjct: 489 KGIDDHRVQYLRDLKDGRSKDNI 511



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/196 (18%), Positives = 88/196 (44%), Gaps = 7/196 (3%)

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           +P +  +  LI   GK +  ++  ++F++++     P L ++ +++  Y ++   G+ + 
Sbjct: 157 RPYVGIYVKLITMLGKCKQPERAHELFQAMVDEGCAPNLESYTALVSAYSRS---GRFDR 213

Query: 213 VFQKMTAMKYTPS----FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            F  +  MK TP       TY  +I    +  +  R + + +++++ G    V T N ++
Sbjct: 214 AFSLLEQMKATPGCRPDVQTYSILIKSCLHAYDFERVKYLMEDMARAGIRPNVVTYNTLI 273

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           +AY   G   E +            PD  T     +A+  +   E ++   ++ + +GI 
Sbjct: 274 DAYGKAGRFAEMESTLLEMLTENCKPDVWTMNSTLRAFGGSGQIETMESCYEKFQASGIS 333

Query: 329 PNKRFFLEALETFSSS 344
           PN + +   L+++  +
Sbjct: 334 PNIKTYNILLDSYGKA 349


>gi|357125122|ref|XP_003564244.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Brachypodium distachyon]
          Length = 502

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 162/331 (48%), Gaps = 4/331 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+ Q WY    GIY KLI ++GK  Q   A  LF  M + GC P+   Y AL++A+    
Sbjct: 141 MRDQVWYRPYVGIYIKLITMLGKCKQPGKAHELFQAMVDEGCAPNLESYTALVSAY---- 196

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++ +  +A     +MK    C+P++ TY+IL+++C  A + D+V  L  ++    + P+
Sbjct: 197 SRSGSFDRAFSLLDRMKATPGCRPDVQTYSILIKSCLHAYDFDKVKDLLADMACGGIRPN 256

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TYN ++DAYGK G   EMES L  M S +CKPD+ T N  + ++G     + ME  ++
Sbjct: 257 TVTYNTLVDAYGKAGRFAEMESTLLEMLSEKCKPDVWTMNSTLRAFGSSGQIEMMESCYE 316

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
               S   P + T+N ++ +YGKA++  K   V + M    Y+ + +TY  +I  +G   
Sbjct: 317 KFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAG 376

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           ++ +   IF  +          TL +++ AY       + + +     N   T D   + 
Sbjct: 377 DLEQMEYIFRLMKSDRIKPNCVTLCSLIRAYGRADQVKKIETVLRIIENSDTTLDIVFFN 436

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
            L  AY +      +  +L  M+   + P+K
Sbjct: 437 CLVDAYGRVGCLAEMWDVLNMMKLERVSPDK 467



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 122/257 (47%), Gaps = 27/257 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           +T  Y+ L+   GK G+         EM +  C+PD    N+ +              +A
Sbjct: 256 NTVTYNTLVDAYGKAGRFAEMESTLLEMLSEKCKPDVWTMNSTL--------------RA 301

Query: 70  LGYFQKMKGMERC---------KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            G   +++ ME C          PNI TYNILL +  +A+  +++ A+ + + +   +  
Sbjct: 302 FGSSGQIEMMESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWT 361

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           I TYN V+DA+G+ G +++ME +   MKS++ KP+ +T   LI +YG+     K+E V +
Sbjct: 362 IVTYNVVIDAFGRAGDLEQMEYIFRLMKSDRIKPNCVTLCSLIRAYGRADQVKKIETVLR 421

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY---G 237
            + +S     +  FN ++  YG+     +   V   M   + +P  +T   +I  +   G
Sbjct: 422 IIENSDTTLDIVFFNCLVDAYGRVGCLAEMWDVLNMMKLERVSPDKVTCTTMIKWFLVKG 481

Query: 238 YCDN-VSRAREIFDELS 253
             D+ V   R++ D LS
Sbjct: 482 IDDHRVQHLRDLKDGLS 498



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 134/314 (42%), Gaps = 36/314 (11%)

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
           LH R  A     AL  F+ M+     +P +  Y  L+    + +   + + LF+ + +  
Sbjct: 122 LHERIAALRWESALKVFELMRDQVWYRPYVGIYIKLITMLGKCKQPGKAHELFQAMVDEG 181

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDI------------------- 156
            AP++ +Y  ++ AY ++G      S+L RMK+   C+PD+                   
Sbjct: 182 CAPNLESYTALVSAYSRSGSFDRAFSLLDRMKATPGCRPDVQTYSILIKSCLHAYDFDKV 241

Query: 157 ----------------ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
                           +T+N L+D+YGK   F +ME     ++  K KP + T NS +  
Sbjct: 242 KDLLADMACGGIRPNTVTYNTLVDAYGKAGRFAEMESTLLEMLSEKCKPDVWTMNSTLRA 301

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
           +G +      E  ++K  A   +P+  TY  ++  YG      +   + + + K      
Sbjct: 302 FGSSGQIEMMESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWT 361

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           + T N +++A+   G   + + +F    +  + P+  T   L +AY +A+  + ++ +L+
Sbjct: 362 IVTYNVVIDAFGRAGDLEQMEYIFRLMKSDRIKPNCVTLCSLIRAYGRADQVKKIETVLR 421

Query: 321 RMEQNGIVPNKRFF 334
            +E +    +  FF
Sbjct: 422 IIENSDTTLDIVFF 435



 Score = 44.7 bits (104), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 36/196 (18%), Positives = 86/196 (43%), Gaps = 7/196 (3%)

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           +P +  +  LI   GK +   K  ++F++++     P L ++ +++  Y ++   G  + 
Sbjct: 148 RPYVGIYIKLITMLGKCKQPGKAHELFQAMVDEGCAPNLESYTALVSAYSRS---GSFDR 204

Query: 213 VFQKMTAMKYTPS----FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            F  +  MK TP       TY  +I    +  +  + +++  +++  G      T N ++
Sbjct: 205 AFSLLDRMKATPGCRPDVQTYSILIKSCLHAYDFDKVKDLLADMACGGIRPNTVTYNTLV 264

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           +AY   G   E +       +    PD  T     +A+  +   E+++   ++ + +GI 
Sbjct: 265 DAYGKAGRFAEMESTLLEMLSEKCKPDVWTMNSTLRAFGSSGQIEMMESCYEKFQASGIS 324

Query: 329 PNKRFFLEALETFSSS 344
           PN + +   L+++  +
Sbjct: 325 PNIKTYNILLDSYGKA 340


>gi|413944457|gb|AFW77106.1| hypothetical protein ZEAMMB73_510937 [Zea mays]
          Length = 492

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 163/331 (49%), Gaps = 4/331 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+ Q WY    GIY KLI ++GK  Q   A  LF  M + GC P+   Y AL++    T 
Sbjct: 131 MRDQVWYKPHIGIYIKLITMLGKCKQPEKAHQLFQAMIDEGCAPNLQSYTALVS----TY 186

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++    +A     +MK    C+P++ TY+IL+++C  A + ++V +L  ++  + + P+
Sbjct: 187 SRSGRFREAFDLLDRMKDTPGCQPDVQTYSILIKSCLHAYDFEKVKSLLADMARAGIPPN 246

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TYN ++DAYGK G   EMES L +M S  CKPD+ T N  + ++G     + ME  ++
Sbjct: 247 TVTYNTLIDAYGKAGRFAEMESTLLKMLSQNCKPDVWTMNSTLRAFGSSGQIETMESCYE 306

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
               S   P + T+N ++ +YGKA++  K   V + M    Y+ + +TY  +I  +G   
Sbjct: 307 KFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAG 366

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           ++ +   IF  +          TL +++ AY   G   +         N  +T D   + 
Sbjct: 367 DLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIKTALRIIENSDITLDIVFFN 426

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
            L  AY +      +  +L  M+++   P+K
Sbjct: 427 CLVDAYGRVGCLAEMWDILDLMKEHRCKPDK 457



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 132/314 (42%), Gaps = 36/314 (11%)

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
           LH R  A     AL  F+ M+     KP+I  Y  L+    + +  ++ + LF+ + +  
Sbjct: 112 LHDRVAALRWDSALKVFELMRDQVWYKPHIGIYIKLITMLGKCKQPEKAHQLFQAMIDEG 171

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDI------------------- 156
            AP++ +Y  ++  Y ++G  +E   +L RMK    C+PD+                   
Sbjct: 172 CAPNLQSYTALVSTYSRSGRFREAFDLLDRMKDTPGCQPDVQTYSILIKSCLHAYDFEKV 231

Query: 157 ----------------ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
                           +T+N LID+YGK   F +ME     ++    KP + T NS +  
Sbjct: 232 KSLLADMARAGIPPNTVTYNTLIDAYGKAGRFAEMESTLLKMLSQNCKPDVWTMNSTLRA 291

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
           +G +      E  ++K  A    P+  TY  ++  YG      +   + + + K      
Sbjct: 292 FGSSGQIETMESCYEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWT 351

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           + T N +++A+   G   + + +F    +  + P+  T   + +AY +A   + ++  L+
Sbjct: 352 IVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIKTALR 411

Query: 321 RMEQNGIVPNKRFF 334
            +E + I  +  FF
Sbjct: 412 IIENSDITLDIVFF 425



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 109/236 (46%), Gaps = 23/236 (9%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           +T  Y+ LI   GK G+         +M +  C+PD    N+ +              +A
Sbjct: 246 NTVTYNTLIDAYGKAGRFAEMESTLLKMLSQNCKPDVWTMNSTL--------------RA 291

Query: 70  LGYFQKMKGMERC---------KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            G   +++ ME C          PNI TYNILL +  +A+  +++ A+ + + +   +  
Sbjct: 292 FGSSGQIETMESCYEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWT 351

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           I TYN V+DA+G+ G +++ME +   MKS + KP+ +T   ++ +YG+     K++   +
Sbjct: 352 IVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIKTALR 411

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
            + +S     +  FN ++  YG+     +   +   M   +  P  +T   +I  +
Sbjct: 412 IIENSDITLDIVFFNCLVDAYGRVGCLAEMWDILDLMKEHRCKPDKVTCTTMIKWF 467



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 5/140 (3%)

Query: 49  YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL 108
           YN +I A      +A  L +    F+ MK  ER KPN VT   ++RA  +A  V ++   
Sbjct: 355 YNVVIDAF----GRAGDLEQMEYIFRLMKS-ERIKPNCVTLCSVVRAYGRAGEVKKIKTA 409

Query: 109 FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
            + +  S +  DI  +N ++DAYG+ G + EM  +L  MK ++CKPD +T   +I  +  
Sbjct: 410 LRIIENSDITLDIVFFNCLVDAYGRVGCLAEMWDILDLMKEHRCKPDKVTCTTMIKWFLI 469

Query: 169 RQAFDKMEQVFKSLMHSKEK 188
           +   D   Q  + L   + K
Sbjct: 470 KGIDDHRVQYLRDLKDGRAK 489



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/196 (20%), Positives = 87/196 (44%), Gaps = 7/196 (3%)

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           KP I  +  LI   GK +  +K  Q+F++++     P L ++ +++  Y ++   G+   
Sbjct: 138 KPHIGIYIKLITMLGKCKQPEKAHQLFQAMIDEGCAPNLQSYTALVSTYSRS---GRFRE 194

Query: 213 VFQKMTAMKYTP----SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            F  +  MK TP       TY  +I    +  +  + + +  ++++ G      T N ++
Sbjct: 195 AFDLLDRMKDTPGCQPDVQTYSILIKSCLHAYDFEKVKSLLADMARAGIPPNTVTYNTLI 254

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           +AY   G   E +       +    PD  T     +A+  +   E ++   ++ + +GIV
Sbjct: 255 DAYGKAGRFAEMESTLLKMLSQNCKPDVWTMNSTLRAFGSSGQIETMESCYEKFQASGIV 314

Query: 329 PNKRFFLEALETFSSS 344
           PN + +   L+++  +
Sbjct: 315 PNIKTYNILLDSYGKA 330


>gi|357458279|ref|XP_003599420.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488468|gb|AES69671.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 511

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 169/344 (49%), Gaps = 5/344 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           ++ Q WY      Y+KL+ ++ K  Q + A  L+  M   G +P   V  AL++A+    
Sbjct: 122 LRNQYWYEPRCQTYTKLLMMLSKCKQPKEASQLYETMLFEGLKPTVDVLTALVSAY---- 177

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++     A    + MK +  CKP++ TY++L+  CA+ R  D +  +  ++  S +  +
Sbjct: 178 GQSGLFRHAFSTIEDMKSVVDCKPDVYTYSVLISCCAKFRRFDLIERVLADMSYSGIECN 237

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             TYN ++D YGK GM ++ME+ L+ M  N+ C+PD+ T N LI SYG     DKME+ +
Sbjct: 238 SVTYNSIIDGYGKAGMFEQMENSLTDMIENENCQPDVFTLNSLIGSYGNGGKIDKMEKWY 297

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
                   KP + TFN MI +YGKA +  K + V   M    + P+ +TY  +I +YG  
Sbjct: 298 DEFQLMSIKPDIKTFNMMIKSYGKAGMYDKMKSVMDFMERRFFAPTIVTYNTVIEVYGKA 357

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             + +  + F  +  +G      T  +++ AY   GL  + D +  +  N  V  D+  +
Sbjct: 358 GEIEKMDKHFKNMKHIGMKPNSVTYCSLVNAYSKAGLIRKIDSILRHVENSDVILDTPFF 417

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
             +  AY +    + + +L   M      P++  F   ++ +++
Sbjct: 418 NCIISAYGQVGDLKKMGELFLAMRARKCEPDRTTFTCMIQAYNT 461



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 135/303 (44%), Gaps = 37/303 (12%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL  F+ ++     +P   TY  LL   ++ +   + + L++ +    L P +     ++
Sbjct: 115 ALMIFELLRNQYWYEPRCQTYTKLLMMLSKCKQPKEASQLYETMLFEGLKPTVDVLTALV 174

Query: 129 DAYGKNGMIKEMESVLSRMKSN-QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
            AYG++G+ +   S +  MKS   CKPD+ T+++LI    K + FD +E+V   + +S  
Sbjct: 175 SAYGQSGLFRHAFSTIEDMKSVVDCKPDVYTYSVLISCCAKFRRFDLIERVLADMSYSGI 234

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT-PSFITYECIITMYGYCDNVSRAR 246
           +    T+NS+I  YGKA +  + E     M   +   P   T   +I  YG    + +  
Sbjct: 235 ECNSVTYNSIIDGYGKAGMFEQMENSLTDMIENENCQPDVFTLNSLIGSYGNGGKIDKME 294

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGL-----------------PT----------- 278
           + +DE   +     + T N M+++Y   G+                 PT           
Sbjct: 295 KWYDEFQLMSIKPDIKTFNMMIKSYGKAGMYDKMKSVMDFMERRFFAPTIVTYNTVIEVY 354

Query: 279 -------EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
                  + D  F+N  ++G+ P+S TY  L  AY+KA +   +  +L+ +E + ++ + 
Sbjct: 355 GKAGEIEKMDKHFKNMKHIGMKPNSVTYCSLVNAYSKAGLIRKIDSILRHVENSDVILDT 414

Query: 332 RFF 334
            FF
Sbjct: 415 PFF 417



 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 1/137 (0%)

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
           Y P   TY  ++ M   C     A ++++ +   G    V  L A++ AY  +GL   A 
Sbjct: 128 YEPRCQTYTKLLMMLSKCKQPKEASQLYETMLFEGLKPTVDVLTALVSAYGQSGLFRHAF 187

Query: 282 LLFENSHNM-GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALET 340
              E+  ++    PD  TY +L     K    +L++++L  M  +GI  N   +   ++ 
Sbjct: 188 STIEDMKSVVDCKPDVYTYSVLISCCAKFRRFDLIERVLADMSYSGIECNSVTYNSIIDG 247

Query: 341 FSSSLAGSQSGSAKTDL 357
           +  +    Q  ++ TD+
Sbjct: 248 YGKAGMFEQMENSLTDM 264


>gi|255553476|ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543051|gb|EEF44586.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 486

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 166/342 (48%), Gaps = 5/342 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           ++KQ WY      Y+KL+ ++GK  Q   A  LF  M+  G RP   VY AL++A+    
Sbjct: 118 LRKQHWYEPRCQTYTKLLMMLGKCRQPEEARLLFEVMQTEGLRPTIDVYTALVSAY---- 173

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  LAKA     +MK +  CKP++ TY++L+  C +    D +  +  E+    +   
Sbjct: 174 GESGLLAKAFSTVDEMKSVSDCKPDVYTYSVLINICTKLHRFDLIGRILSEMSYLGVECS 233

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             T+N +++ YGK  M +EME+ L+ M +     PD+ TFN +I +YG     +KME+ +
Sbjct: 234 TVTFNTIINGYGKAKMFREMENSLTNMIEIGNSVPDLFTFNSVIGAYGNSGRIEKMEKWY 293

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
                    P + TFN +I +YGKA +  K   V + M    + P+ +TY  II  +G  
Sbjct: 294 NEFQLMGISPDIKTFNILIKSYGKAGMYEKINSVIEFMKKRFFPPTVVTYNIIIETFGRA 353

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            ++    E F  +  LG      T  +++ AY   GL  + + +     N  V  D++ +
Sbjct: 354 GDIENMDEYFKTMKHLGMKPNAITYCSLVSAYSKAGLLMKVNSILRQVENSDVVLDTTFF 413

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
             +  AY +A   + + +L   M +   +P+   F   ++ +
Sbjct: 414 NCIINAYGQAGDVDKMAELFLEMRERECMPDNVTFATMIQAY 455



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 148/333 (44%), Gaps = 41/333 (12%)

Query: 43  RPDPSVYNAL----ITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
           + D S YN L    +   L    K +    AL  F+ ++     +P   TY  LL    +
Sbjct: 81  KADSSKYNRLWPKAVLEALDDAIKERRWKSALKIFELLRKQHWYEPRCQTYTKLLMMLGK 140

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDII 157
            R  ++   LF+ +    L P I  Y  ++ AYG++G++ +  S +  MKS + CKPD+ 
Sbjct: 141 CRQPEEARLLFEVMQTEGLRPTIDVYTALVSAYGESGLLAKAFSTVDEMKSVSDCKPDVY 200

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           T+++LI+   K   FD + ++   + +   + +  TFN++I  YGKA++  + E     M
Sbjct: 201 TYSVLINICTKLHRFDLIGRILSEMSYLGVECSTVTFNTIINGYGKAKMFREMENSLTNM 260

Query: 218 TAM-KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
             +    P   T+  +I  YG    + +  + ++E   +G    + T N ++++Y   G+
Sbjct: 261 IEIGNSVPDLFTFNSVIGAYGNSGRIEKMEKWYNEFQLMGISPDIKTFNILIKSYGKAGM 320

Query: 277 -----------------PT------------------EADLLFENSHNMGVTPDSSTYKL 301
                            PT                    D  F+   ++G+ P++ TY  
Sbjct: 321 YEKINSVIEFMKKRFFPPTVVTYNIIIETFGRAGDIENMDEYFKTMKHLGMKPNAITYCS 380

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           L  AY+KA +   V  +L+++E + +V +  FF
Sbjct: 381 LVSAYSKAGLLMKVNSILRQVENSDVVLDTTFF 413



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 10/205 (4%)

Query: 8   IADTGIYSKLIAVMGKKGQT-RLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           + D   ++ +I   G  G+  ++  W ++E +  G  PD   +N LI ++     KA   
Sbjct: 267 VPDLFTFNSVIGAYGNSGRIEKMEKW-YNEFQLMGISPDIKTFNILIKSY----GKAGMY 321

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            K     + MK      P +VTYNI++    +A +++ ++  FK +    + P+  TY  
Sbjct: 322 EKINSVIEFMKK-RFFPPTVVTYNIIIETFGRAGDIENMDEYFKTMKHLGMKPNAITYCS 380

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++ AY K G++ ++ S+L +++++    D   FN +I++YG+    DKM ++F  +   +
Sbjct: 381 LVSAYSKAGLLMKVNSILRQVENSDVVLDTTFFNCIINAYGQAGDVDKMAELFLEMRERE 440

Query: 187 EKPTLPTFNSMIINYGKARLQGKAE 211
             P   TF +MI  Y   R QG  E
Sbjct: 441 CMPDNVTFATMIQAY---RGQGMTE 462


>gi|297833394|ref|XP_002884579.1| EMB2750 [Arabidopsis lyrata subsp. lyrata]
 gi|297330419|gb|EFH60838.1| EMB2750 [Arabidopsis lyrata subsp. lyrata]
          Length = 486

 Score =  164 bits (414), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 168/342 (49%), Gaps = 5/342 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q +Y    G Y KL+ ++GK GQ   A  LF EM   G  P   +Y AL+ A+    
Sbjct: 114 LREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYT--- 170

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  +  A      MKG+ +C+P++ TY+ LL+AC  A   D V++L+KE+ E ++ P+
Sbjct: 171 -RSNLIDDAFSILDTMKGLPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPN 229

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             T N V+  YG+ G   +ME VLS M  S  CKPD+ T N+++  +G     D ME  +
Sbjct: 230 TVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWY 289

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           +   +   +P   TFN +I +YGK R+  K   V + M  +++  +  TY  II  +   
Sbjct: 290 EKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADV 349

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            +       FD++   G      T   ++  Y   GL  +     + +    +  +++ Y
Sbjct: 350 GDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFY 409

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
             +  A  KA+    ++++  RM++   V + R F   +E +
Sbjct: 410 NAVIAACAKADDLIEMERVYTRMKERQCVCDSRTFEIMVEAY 451



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 88/225 (39%), Gaps = 47/225 (20%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D    + +++V G  G+  +    + + RN G  P+   +N LI ++   R   K ++  
Sbjct: 265 DVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDK-MSSV 323

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT------ 123
           + Y +K++          TYN ++ A A   +   +   F ++    +  D  T      
Sbjct: 324 MEYMRKLE----FPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLIN 379

Query: 124 -----------------------------YNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
                                        YN V+ A  K   + EME V +RMK  QC  
Sbjct: 380 GYANAGLFHKVISSVQLAAKFEIPENTAFYNAVIAACAKADDLIEMERVYTRMKERQCVC 439

Query: 155 DIITFNLLIDSYGKRQAFDK---MEQVFKSLMH----SKEKPTLP 192
           D  TF +++++Y K    DK   +EQ  + LM     +KE   LP
Sbjct: 440 DSRTFEIMVEAYEKEGMNDKIYYLEQERQKLMDRAVATKEMENLP 484


>gi|255578090|ref|XP_002529915.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530592|gb|EEF32469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 636

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 175/344 (50%), Gaps = 5/344 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q WY   +G+Y KLI ++GK  Q   A  LF  M + GC      Y AL++A+    
Sbjct: 145 LREQIWYRPYSGMYIKLIVMLGKCKQPEKAHELFQAMIHEGCDVSHESYTALLSAY---- 200

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  L KA    ++MK    C+P++ TY+IL+++C Q    D+   L   +    ++P+
Sbjct: 201 GRSGLLDKAFSLLEEMKRNPDCQPDVHTYSILIKSCVQVFAFDKAKTLLSNMESLGISPN 260

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             TYN ++DAYGK  M +EME+ L +M S Q C+PD+ T N  + ++G     + ME+ +
Sbjct: 261 TITYNTLIDAYGKAKMFEEMEATLVKMLSQQNCEPDVWTMNSTLRAFGISGQIETMEKCY 320

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           +    +  +P++ TFN ++ +YGKA    K   V + M    Y+ + ITY  +I  +G  
Sbjct: 321 EKFQGAGIEPSIMTFNVLLDSYGKAGDYKKMSAVMEYMQKYHYSWTIITYNIVIDAFGRA 380

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            ++ +   +F  +          TL +++ AY     P + + +     N  +T D+  +
Sbjct: 381 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGQAEKPEKIEGVLRFIENSDITLDTVFF 440

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
             L  AY +      ++ +L  MEQ G  P+K  +   ++ +SS
Sbjct: 441 NCLVDAYGRMGCFAEMKGVLILMEQKGYRPDKITYRTMIKAYSS 484



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 122/276 (44%), Gaps = 39/276 (14%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA-- 67
           D   YS LI    +      A  L S M + G  P+   YN LI A+     KAK     
Sbjct: 225 DVHTYSILIKSCVQVFAFDKAKTLLSNMESLGISPNTITYNTLIDAY----GKAKMFEEM 280

Query: 68  ------------------------KALGYFQKMKGMERC---------KPNIVTYNILLR 94
                                   +A G   +++ ME+C         +P+I+T+N+LL 
Sbjct: 281 EATLVKMLSQQNCEPDVWTMNSTLRAFGISGQIETMEKCYEKFQGAGIEPSIMTFNVLLD 340

Query: 95  ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
           +  +A +  +++A+ + + +   +  I TYN V+DA+G+ G +K+ME +   M+S + KP
Sbjct: 341 SYGKAGDYKKMSAVMEYMQKYHYSWTIITYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP 400

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
             +T   L+ +YG+ +  +K+E V + + +S        FN ++  YG+     + + V 
Sbjct: 401 SCVTLCSLVRAYGQAEKPEKIEGVLRFIENSDITLDTVFFNCLVDAYGRMGCFAEMKGVL 460

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             M    Y P  ITY  +I  Y         +E+ D
Sbjct: 461 ILMEQKGYRPDKITYRTMIKAYSSKGMTKHVKELQD 496


>gi|356565453|ref|XP_003550954.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Glycine max]
          Length = 488

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 165/342 (48%), Gaps = 5/342 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q +Y    G Y KLI ++GK GQ   A  LF+ M   G  P P +Y AL+ A+    
Sbjct: 116 LREQTFYQPKEGTYMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPELYTALLAAYC--- 172

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  + +A     +MK + RC+P++ TY+ L++ C  A   D V  L++E+ E  + P+
Sbjct: 173 -RSNMIDEAFSVLNEMKKLPRCQPDVFTYSTLIKVCVDAFKFDLVELLYEEMAERSIMPN 231

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             T N V+  YGK GM  +ME VLS M  S  CKPD+ T N +I  +G     D ME+ +
Sbjct: 232 TVTQNIVLGGYGKAGMFDQMEKVLSSMLLSTTCKPDVWTMNTIISVFGNMGQIDMMEKWY 291

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           +   +   +P   TFN +I  YGK R+  K   V + M  +++  +  TY  +I  +   
Sbjct: 292 EKFRYFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADA 351

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            +       FD++   G      TL  ++  Y   GL  +       +  + +  + + Y
Sbjct: 352 GDAKHMECTFDQMRAEGMKADTKTLCCLINGYANAGLFHKVISSVRLAGKLEIPENITFY 411

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
             +  A  KA     ++++ KRM+ +   P+   +   +E +
Sbjct: 412 NAVLSACAKAEDLMEMERVFKRMKDSQCQPDDTTYTIMIEAY 453


>gi|297736801|emb|CBI26002.3| unnamed protein product [Vitis vinifera]
          Length = 469

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 165/336 (49%), Gaps = 14/336 (4%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q +Y    G Y KL+ ++GK GQ   A  LF  M   GC P   +Y AL+ ++    
Sbjct: 134 LREQPFYQPKEGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTELYTALLASYC--- 190

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  + +A     +MK + RC+P++ TY+ LL+AC  A   + V +L++E+    + P+
Sbjct: 191 -RSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASRFELVESLYEEMDVRSITPN 249

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             T N V+  YGK G   EME VLS M +S   KPD+ T N ++  +G +   + ME+ +
Sbjct: 250 TVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKWY 309

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           +   +   +P   TFN +I  YGK R+  K   V + M  +++  +  TY  +I  +   
Sbjct: 310 EKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFSDV 369

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL------FENSHNMGVT 293
            +       FD++   G      T   ++  Y   GL  +A+ L      F    +    
Sbjct: 370 GDAKNMEYTFDQMRAEGMKADTKTFCCLIRGYANAGLFHKAEDLIEMERVFNRMKDKHCQ 429

Query: 294 PDSSTYKLLYKAYTKANMKELVQKL---LKRMEQNG 326
           PDS+TY ++ +AY K  M + +  L    +RM  +G
Sbjct: 430 PDSTTYSIMVEAYKKEGMNDKIYDLEQERQRMVADG 465



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 116/288 (40%), Gaps = 51/288 (17%)

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           K   +AL  F+ ++     +P   TY  LL    ++    + + LF  + E    P    
Sbjct: 122 KQWLQALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTEL 181

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           Y  ++ +Y ++ +I E  S+L++MK+  +C+PD+ T++ L+ +      F+ +E ++   
Sbjct: 182 YTALLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASRFELVESLY--- 238

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                                           ++M     TP+ +T   +++ YG     
Sbjct: 239 --------------------------------EEMDVRSITPNTVTQNIVLSGYGKAGK- 265

Query: 243 SRAREIFDELSKLGKDM--------KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
                 FDE+ K+   M         V T+N +L  +   G     +  +E   N G+ P
Sbjct: 266 ------FDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRNFGIEP 319

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           ++ T+ +L  AY K  M + +  +++ M +         +   +E FS
Sbjct: 320 ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFS 367


>gi|15230719|ref|NP_187294.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207273|sp|Q9SQU6.1|PP216_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g06430, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2750; Flags: Precursor
 gi|6437546|gb|AAF08573.1|AC011623_6 unknown protein [Arabidopsis thaliana]
 gi|20466300|gb|AAM20467.1| unknown protein [Arabidopsis thaliana]
 gi|30387593|gb|AAP31962.1| At3g06430 [Arabidopsis thaliana]
 gi|332640870|gb|AEE74391.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 486

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 167/342 (48%), Gaps = 5/342 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q +Y    G Y KL+ ++GK GQ   A  LF EM   G  P   +Y AL+ A+    
Sbjct: 114 LREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYT--- 170

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  +  A     KMK   +C+P++ TY+ LL+AC  A   D V++L+KE+ E ++ P+
Sbjct: 171 -RSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPN 229

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             T N V+  YG+ G   +ME VLS M  S  CKPD+ T N+++  +G     D ME  +
Sbjct: 230 TVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWY 289

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           +   +   +P   TFN +I +YGK R+  K   V + M  +++  +  TY  II  +   
Sbjct: 290 EKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADV 349

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            +       FD++   G      T   ++  Y   GL  +     + +    +  +++ Y
Sbjct: 350 GDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFY 409

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
             +  A  KA+    ++++  RM++   V + R F   +E +
Sbjct: 410 NAVISACAKADDLIEMERVYIRMKERQCVCDSRTFEIMVEAY 451



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 120/296 (40%), Gaps = 37/296 (12%)

Query: 53  ITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL 112
           +T  L      K   +AL  F  ++     +P   TY  LL    ++   ++   LF E+
Sbjct: 91  VTETLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEM 150

Query: 113 HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITF------------ 159
            E  L P +  Y  ++ AY ++ +I +  S+L +MKS  QC+PD+ T+            
Sbjct: 151 LEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQ 210

Query: 160 -----------------------NLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFN 195
                                  N+++  YG+   FD+ME+V   ++ S   KP + T N
Sbjct: 211 FDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMN 270

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
            ++  +G        E  ++K       P   T+  +I  YG      +   + + + KL
Sbjct: 271 IILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKL 330

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
                 ST N ++EA+   G     +L F+   + G+  D+ T+  L   Y  A +
Sbjct: 331 EFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGL 386



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 87/225 (38%), Gaps = 47/225 (20%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D    + +++V G  G+  +    + + RN G  P+   +N LI ++   R   K ++  
Sbjct: 265 DVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDK-MSSV 323

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT------ 123
           + Y +K++          TYN ++ A A   +   +   F ++    +  D  T      
Sbjct: 324 MEYMRKLE----FPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLIN 379

Query: 124 -----------------------------YNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
                                        YN V+ A  K   + EME V  RMK  QC  
Sbjct: 380 GYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYIRMKERQCVC 439

Query: 155 DIITFNLLIDSYGKRQAFDK---MEQVFKSLMH----SKEKPTLP 192
           D  TF +++++Y K    DK   +EQ  + LM     +KE   LP
Sbjct: 440 DSRTFEIMVEAYEKEGMNDKIYYLEQERQKLMDRTVATKEMENLP 484


>gi|242092154|ref|XP_002436567.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
 gi|241914790|gb|EER87934.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
          Length = 492

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 164/331 (49%), Gaps = 4/331 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+ Q WY    GIY KLI ++GK  +   A  LF  M + GC P+   Y AL++A+    
Sbjct: 131 MRDQVWYRPYIGIYIKLITMLGKCKKPEKAHELFQAMIDEGCAPNLESYTALVSAY---- 186

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++    +A     +MK    C+P++ TY+IL+++C  A + ++V +L  ++  + + P+
Sbjct: 187 SRSGRFHEAFNLLDRMKDTPGCQPDVKTYSILIKSCLHAYDFEKVKSLLTDMARAGIRPN 246

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TYN ++DAYGK     EMES L +M S  CKPDI T N  + ++G     + ME  ++
Sbjct: 247 TVTYNTLIDAYGKARRFPEMESTLLKMLSQNCKPDIWTMNSTLRAFGSSGQIETMESCYE 306

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
               S   P + T+N ++ +YGKA++  K   V + M    Y+ + +TY  +I  +G   
Sbjct: 307 KFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAG 366

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           ++ +   IF  +          TL +++ AY   G   +   +     N  +T D   + 
Sbjct: 367 DLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIKTVLRIVENSDITLDIVFFN 426

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
            L  AY +      +  +L  M+++   P+K
Sbjct: 427 CLVDAYGRVGCLAEMWDILDLMKEHRCKPDK 457



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 125/275 (45%), Gaps = 1/275 (0%)

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
           LH R  A     AL  F+ M+     +P I  Y  L+    + +  ++ + LF+ + +  
Sbjct: 112 LHERVAALRWDSALKVFELMRDQVWYRPYIGIYIKLITMLGKCKKPEKAHELFQAMIDEG 171

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKM 175
            AP++ +Y  ++ AY ++G   E  ++L RMK    C+PD+ T+++LI S      F+K+
Sbjct: 172 CAPNLESYTALVSAYSRSGRFHEAFNLLDRMKDTPGCQPDVKTYSILIKSCLHAYDFEKV 231

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
           + +   +  +  +P   T+N++I  YGKAR   + E    KM +    P   T    +  
Sbjct: 232 KSLLTDMARAGIRPNTVTYNTLIDAYGKARRFPEMESTLLKMLSQNCKPDIWTMNSTLRA 291

Query: 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           +G    +      +++    G    + T N +L++Y    +  +   + E       +  
Sbjct: 292 FGSSGQIETMESCYEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWT 351

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             TY ++  A+ +A   E ++ + + M+   I PN
Sbjct: 352 IVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPN 386



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 107/234 (45%), Gaps = 30/234 (12%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRD---------------------KAKALAKALG 71
           L ++M  +G RP+   YN LI A+   R                         +  +A G
Sbjct: 234 LLTDMARAGIRPNTVTYNTLIDAYGKARRFPEMESTLLKMLSQNCKPDIWTMNSTLRAFG 293

Query: 72  YFQKMKGMERC---------KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              +++ ME C          PNI TYNILL +  +A+  +++ A+ + + +   +  I 
Sbjct: 294 SSGQIETMESCYEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIV 353

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN V+DA+G+ G +++ME +   MKS + KP+ +T   ++ +YG+     K++ V + +
Sbjct: 354 TYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIKTVLRIV 413

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
            +S     +  FN ++  YG+     +   +   M   +  P  +T   +I  +
Sbjct: 414 ENSDITLDIVFFNCLVDAYGRVGCLAEMWDILDLMKEHRCKPDKVTCATMIKWF 467



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 90/198 (45%), Gaps = 11/198 (5%)

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           +P I  +  LI   GK +  +K  ++F++++     P L ++ +++  Y ++   G+   
Sbjct: 138 RPYIGIYIKLITMLGKCKKPEKAHELFQAMIDEGCAPNLESYTALVSAYSRS---GRFHE 194

Query: 213 VFQKMTAMKYTPS----FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            F  +  MK TP       TY  +I    +  +  + + +  ++++ G      T N ++
Sbjct: 195 AFNLLDRMKDTPGCQPDVKTYSILIKSCLHAYDFEKVKSLLTDMARAGIRPNTVTYNTLI 254

Query: 269 EAYC-MNGLPT-EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           +AY      P  E+ LL   S N    PD  T     +A+  +   E ++   ++ + +G
Sbjct: 255 DAYGKARRFPEMESTLLKMLSQN--CKPDIWTMNSTLRAFGSSGQIETMESCYEKFQASG 312

Query: 327 IVPNKRFFLEALETFSSS 344
           IVPN + +   L+++  +
Sbjct: 313 IVPNIKTYNILLDSYGKA 330


>gi|75265624|sp|Q9SCP4.1|PP279_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g53170
 gi|6630737|emb|CAB64220.1| nodulin / glutamate-ammonia ligase-like protein [Arabidopsis
           thaliana]
          Length = 447

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 169/344 (49%), Gaps = 5/344 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           ++KQ WY      Y+KL  V+G   Q   A  LF  M + G +P   VY +LI+ +    
Sbjct: 84  LRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVY---- 139

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K++ L KA    + MK +  CKP++ T+ +L+  C +    D V ++  E+    +   
Sbjct: 140 GKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCS 199

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             TYN ++D YGK GM +EMESVL+ M +     PD+ T N +I SYG  +   KME  +
Sbjct: 200 TVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWY 259

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
                   +P + TFN +I+++GKA +  K   V   M    ++ + +TY  +I  +G  
Sbjct: 260 SRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKA 319

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             + +  ++F ++   G      T  +++ AY   GL  + D +     N  V  D+  +
Sbjct: 320 GRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFF 379

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
             +  AY +A     +++L  +ME+    P+K  F   ++T+++
Sbjct: 380 NCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTA 423



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 127/303 (41%), Gaps = 37/303 (12%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL  F  ++     +P   TY  L +     +  DQ + LF+ +    L P I  Y  ++
Sbjct: 77  ALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLI 136

Query: 129 DAYGKNGMIKEMESVLSRMKS-NQCKPDIITF---------------------------- 159
             YGK+ ++ +  S L  MKS + CKPD+ TF                            
Sbjct: 137 SVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGV 196

Query: 160 -------NLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTFNSMIINYGKARLQGKAE 211
                  N +ID YGK   F++ME V   ++   +  P + T NS+I +YG  R   K E
Sbjct: 197 GCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKME 256

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
             + +   M   P   T+  +I  +G      +   + D + K    +   T N ++E +
Sbjct: 257 SWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETF 316

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
              G   + D +F      GV P+S TY  L  AY+KA +   +  +L+++  + +V + 
Sbjct: 317 GKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDT 376

Query: 332 RFF 334
            FF
Sbjct: 377 PFF 379



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 122/256 (47%), Gaps = 13/256 (5%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG-CRPDPSVYNALITAHLHTRDKAKALAKA 69
           T  Y+ +I   GK G       + ++M   G   PD    N++I ++ + R+  K +   
Sbjct: 200 TVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRK-MESW 258

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              FQ M      +P+I T+NIL+ +  +A    ++ ++   + +   +    TYN V++
Sbjct: 259 YSRFQLMG----VQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIE 314

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +GK G I++M+ V  +MK    KP+ IT+  L+++Y K     K++ V + +++S    
Sbjct: 315 TFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVL 374

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
             P FN +I  YG+A      + ++ +M   K  P  IT+  +I  Y        A  IF
Sbjct: 375 DTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTY-------TAHGIF 427

Query: 250 DELSKLGKDMKVSTLN 265
           D + +L K M  S  N
Sbjct: 428 DAVQELEKQMISSGEN 443



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 5/178 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ LI   GK G  +    +   M           YN +I     T  KA  + K 
Sbjct: 270 DITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVI----ETFGKAGRIEKM 325

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F+KMK  +  KPN +TY  L+ A ++A  V +++++ +++  S +  D   +N +++
Sbjct: 326 DDVFRKMK-YQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIIN 384

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           AYG+ G +  M+ +  +M+  +CKPD ITF  +I +Y     FD ++++ K ++ S E
Sbjct: 385 AYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMISSGE 442



 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 32/155 (20%), Positives = 73/155 (47%), Gaps = 5/155 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R++   T  Y+ +I   GK G+      +F +M+  G +P+   Y +L+ A+     K
Sbjct: 298 EKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAY----SK 353

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A  + K     +++   +    +   +N ++ A  QA ++  +  L+ ++ E    PD  
Sbjct: 354 AGLVVKIDSVLRQIVNSDVV-LDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKI 412

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           T+  ++  Y  +G+   ++ +  +M S+    DI+
Sbjct: 413 TFATMIKTYTAHGIFDAVQELEKQMISSGENLDIL 447


>gi|334185941|ref|NP_190885.5| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|332645523|gb|AEE79044.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 499

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 169/344 (49%), Gaps = 5/344 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           ++KQ WY      Y+KL  V+G   Q   A  LF  M + G +P   VY +LI+ +    
Sbjct: 134 LRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVY---- 189

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K++ L KA    + MK +  CKP++ T+ +L+  C +    D V ++  E+    +   
Sbjct: 190 GKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCS 249

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             TYN ++D YGK GM +EMESVL+ M +     PD+ T N +I SYG  +   KME  +
Sbjct: 250 TVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWY 309

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
                   +P + TFN +I+++GKA +  K   V   M    ++ + +TY  +I  +G  
Sbjct: 310 SRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKA 369

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             + +  ++F ++   G      T  +++ AY   GL  + D +     N  V  D+  +
Sbjct: 370 GRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFF 429

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
             +  AY +A     +++L  +ME+    P+K  F   ++T+++
Sbjct: 430 NCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTA 473



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 127/303 (41%), Gaps = 37/303 (12%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL  F  ++     +P   TY  L +     +  DQ + LF+ +    L P I  Y  ++
Sbjct: 127 ALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLI 186

Query: 129 DAYGKNGMIKEMESVLSRMKS-NQCKPDIITF---------------------------- 159
             YGK+ ++ +  S L  MKS + CKPD+ TF                            
Sbjct: 187 SVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGV 246

Query: 160 -------NLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTFNSMIINYGKARLQGKAE 211
                  N +ID YGK   F++ME V   ++   +  P + T NS+I +YG  R   K E
Sbjct: 247 GCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKME 306

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
             + +   M   P   T+  +I  +G      +   + D + K    +   T N ++E +
Sbjct: 307 SWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETF 366

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
              G   + D +F      GV P+S TY  L  AY+KA +   +  +L+++  + +V + 
Sbjct: 367 GKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDT 426

Query: 332 RFF 334
            FF
Sbjct: 427 PFF 429


>gi|293330977|ref|NP_001169349.1| uncharacterized protein LOC100383216 [Zea mays]
 gi|30961817|gb|AAP37977.1| PPR2 [Zea mays]
 gi|224028857|gb|ACN33504.1| unknown [Zea mays]
 gi|414883415|tpg|DAA59429.1| TPA: pentatricopeptide repeat 2 [Zea mays]
          Length = 571

 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 113/371 (30%), Positives = 176/371 (47%), Gaps = 54/371 (14%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q +Y    G Y KLI ++G+ GQ   A  LF EM   GC+P P +Y ALI A+    
Sbjct: 207 LKEQPFYHPKEGTYMKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGAYC--- 263

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  L +AL     MK    C+P++ TY+ +++AC  A   D  +A++K++ E  ++P+
Sbjct: 264 -RSGLLDEALQLLNDMKSSPLCQPDVYTYSTIIKACIDAARFDLTDAMYKDMAERSISPN 322

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDII---------------------- 157
             T N V+  YGK G + +ME VLS M  S  CKPD+                       
Sbjct: 323 TVTQNIVLSGYGKAGRLDDMERVLSDMLDSVSCKPDVWTMNIILSLFGNRGEVELMERWY 382

Query: 158 -------------TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
                        T N+LI +YGKR+ +DKM  V + +       T  T+N++I  + +A
Sbjct: 383 EKFRGYGVEPETRTLNILIGAYGKRRMYDKMSAVMEHMRKLAFPWTTATYNNVIEAFAEA 442

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS--KLGK--DMK 260
              G  E+ F +M +    P   T+ C+I      D  SRA +    +   KL +  D+ 
Sbjct: 443 GDAGNMEHAFNQMRSEGMRPDTKTFCCLI------DGFSRAGQFHKVVGMVKLAERLDVP 496

Query: 261 VSTL--NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
           V+T   NA+L A        E + +F    +    PD+STY +L +AY K  M + +  L
Sbjct: 497 VNTPFHNAVLGACARADDLVEMERVFRRMKHTQCEPDASTYSILVEAYRKEGMTDKIYAL 556

Query: 319 LKRMEQNGIVP 329
               E   +VP
Sbjct: 557 --HQENPALVP 565



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 134/304 (44%), Gaps = 2/304 (0%)

Query: 43  RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
           R D   +   +T  L  R  +K   +AL  F+ +K      P   TY  L+    ++   
Sbjct: 174 RADAKAWACTVTEALADRVSSKNWQEALQVFEMLKEQPFYHPKEGTYMKLIVLLGRSGQP 233

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNL 161
            + + LF E+ +    P    Y  ++ AY ++G++ E   +L+ MKS+  C+PD+ T++ 
Sbjct: 234 TRAHQLFDEMLQQGCQPTPELYTALIGAYCRSGLLDEALQLLNDMKSSPLCQPDVYTYST 293

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM-TAM 220
           +I +      FD  + ++K +      P   T N ++  YGKA      E V   M  ++
Sbjct: 294 IIKACIDAARFDLTDAMYKDMAERSISPNTVTQNIVLSGYGKAGRLDDMERVLSDMLDSV 353

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
              P   T   I++++G    V      +++    G + +  TLN ++ AY    +  + 
Sbjct: 354 SCKPDVWTMNIILSLFGNRGEVELMERWYEKFRGYGVEPETRTLNILIGAYGKRRMYDKM 413

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALET 340
             + E+   +     ++TY  + +A+ +A     ++    +M   G+ P+ + F   ++ 
Sbjct: 414 SAVMEHMRKLAFPWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMRPDTKTFCCLIDG 473

Query: 341 FSSS 344
           FS +
Sbjct: 474 FSRA 477


>gi|242037185|ref|XP_002465987.1| hypothetical protein SORBIDRAFT_01g049600 [Sorghum bicolor]
 gi|241919841|gb|EER92985.1| hypothetical protein SORBIDRAFT_01g049600 [Sorghum bicolor]
          Length = 480

 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 174/344 (50%), Gaps = 5/344 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           ++KQ WY   +  Y++L+ ++GK  Q   A  LF  M +   RP   VY AL+ A+ ++ 
Sbjct: 116 LRKQHWYEPRSQTYARLLMMLGKCRQPGPAAALFKAMLSERLRPTADVYTALVGAYGYS- 174

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
                L +AL   ++MKG   CKP+  T+++L+  CA++R  D + A+  E+    +  +
Sbjct: 175 ---GLLDEALAAVEQMKGAADCKPDGYTFSVLINCCAKSRRFDLIPAVLDEMSYLGIECN 231

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
              +N ++D YGK  M +EME  LS M +S    PDI T N +I +YG     D+ME+ +
Sbjct: 232 SVIHNAIIDGYGKAAMFEEMEGALSAMLESGSNVPDIYTMNSVIGAYGNHGRTDEMEKSY 291

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
                   +P   TFN MI +YGKA +  K   +F+ M    ++P+ +T+  +I  +G  
Sbjct: 292 SEFQLMGVEPDTKTFNIMIKSYGKAGMYDKMMSIFRYMKKRFFSPTAVTFNTVIECFGRA 351

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            N+ +    F  +   G      T  +++  Y   GL  +   +   + N  V  D+  +
Sbjct: 352 GNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGLLDKVPGIIRQTENTNVVLDTPFF 411

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
             +  AY K+   ++++++L+ M++    P+K  +   ++ +++
Sbjct: 412 NCVISAYAKSGDIKIMEEMLQLMKEKKCKPDKITYATMIQAYTA 455



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 130/330 (39%), Gaps = 40/330 (12%)

Query: 55  AHLHTRDKAKALAK---ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE 111
           A L   D A A  +   AL  F+ ++     +P   TY  LL    + R      ALFK 
Sbjct: 92  AVLEALDSAVAACRWESALEIFELLRKQHWYEPRSQTYARLLMMLGKCRQPGPAAALFKA 151

Query: 112 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK-SNQCKPDIITF----------- 159
           +    L P    Y  ++ AYG +G++ E  + + +MK +  CKPD  TF           
Sbjct: 152 MLSERLRPTADVYTALVGAYGYSGLLDEALAAVEQMKGAADCKPDGYTFSVLINCCAKSR 211

Query: 160 ------------------------NLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTF 194
                                   N +ID YGK   F++ME    +++ S    P + T 
Sbjct: 212 RFDLIPAVLDEMSYLGIECNSVIHNAIIDGYGKAAMFEEMEGALSAMLESGSNVPDIYTM 271

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           NS+I  YG      + E  + +   M   P   T+  +I  YG      +   IF  + K
Sbjct: 272 NSVIGAYGNHGRTDEMEKSYSEFQLMGVEPDTKTFNIMIKSYGKAGMYDKMMSIFRYMKK 331

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
                   T N ++E +   G   + +  F      GV P+  TY  L   Y+KA + + 
Sbjct: 332 RFFSPTAVTFNTVIECFGRAGNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGLLDK 391

Query: 315 VQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           V  ++++ E   +V +  FF   +  ++ S
Sbjct: 392 VPGIIRQTENTNVVLDTPFFNCVISAYAKS 421


>gi|195616496|gb|ACG30078.1| PPR2 [Zea mays]
          Length = 580

 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 173/371 (46%), Gaps = 54/371 (14%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q +Y    G Y KLI ++G+ GQ   A  LF EM   GC+P P +Y ALI A+    
Sbjct: 216 LKEQPFYHPKEGTYMKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGAYC--- 272

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  L +AL     MK    C+P++ TY+ +++AC  A   D  +A++K++ E  ++P+
Sbjct: 273 -RSGLLDEALQLLNDMKSSPLCQPDVYTYSTIIKACVDAARFDLTDAMYKDMAERSISPN 331

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDII---------------------- 157
             T N V+  YGK G + +ME VLS M  S  CKPD+                       
Sbjct: 332 TVTQNIVLSGYGKAGRLDDMERVLSDMLDSVSCKPDVWTMNIILSLFGNRGEVELMERWY 391

Query: 158 -------------TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
                        T N+LI +YGKR+ +DKM  V + +       T  T+N++I  + +A
Sbjct: 392 EKFRGYGVEPETRTLNILIGAYGKRRMYDKMSAVMEHMRKLAFPWTTATYNNVIEAFAEA 451

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS--KLGKDMKVS 262
              G  E+ F +M +    P   T+ C+I      D  SRA +    +   KL + + V 
Sbjct: 452 GDAGNMEHAFNQMRSEGMRPDTKTFCCLI------DGFSRAGQFHKVVGMVKLAERLDVP 505

Query: 263 T----LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
                 NA+L A        E + +F    +    PD+STY +L +AY K  M + +  L
Sbjct: 506 ANTPFHNAVLGACARADDLVEMERVFRRMKHTQCEPDASTYSILVEAYRKEGMTDKIYAL 565

Query: 319 LKRMEQNGIVP 329
               E   +VP
Sbjct: 566 --HQENPALVP 574



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 134/304 (44%), Gaps = 2/304 (0%)

Query: 43  RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
           R D   +   +T  L  R  +K   +AL  F+ +K      P   TY  L+    ++   
Sbjct: 183 RADAKAWACTVTEALADRVSSKNWQEALQVFEMLKEQPFYHPKEGTYMKLIVLLGRSGQP 242

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNL 161
            + + LF E+ +    P    Y  ++ AY ++G++ E   +L+ MKS+  C+PD+ T++ 
Sbjct: 243 TRAHQLFDEMLQQGCQPTPELYTALIGAYCRSGLLDEALQLLNDMKSSPLCQPDVYTYST 302

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM-TAM 220
           +I +      FD  + ++K +      P   T N ++  YGKA      E V   M  ++
Sbjct: 303 IIKACVDAARFDLTDAMYKDMAERSISPNTVTQNIVLSGYGKAGRLDDMERVLSDMLDSV 362

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
              P   T   I++++G    V      +++    G + +  TLN ++ AY    +  + 
Sbjct: 363 SCKPDVWTMNIILSLFGNRGEVELMERWYEKFRGYGVEPETRTLNILIGAYGKRRMYDKM 422

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALET 340
             + E+   +     ++TY  + +A+ +A     ++    +M   G+ P+ + F   ++ 
Sbjct: 423 SAVMEHMRKLAFPWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMRPDTKTFCCLIDG 482

Query: 341 FSSS 344
           FS +
Sbjct: 483 FSRA 486


>gi|226500056|ref|NP_001147821.1| pentatricopeptide repeat 2 [Zea mays]
 gi|195613946|gb|ACG28803.1| PPR2 [Zea mays]
          Length = 562

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 175/371 (47%), Gaps = 54/371 (14%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q +Y    G Y KLI ++G+ GQ   A  LF EM   GC+P P +Y ALI A+    
Sbjct: 198 LKEQPFYHPKEGTYMKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGAYC--- 254

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  L +AL     MK    C+P++ TY+ +++AC  A   D  + ++K++ E  ++P+
Sbjct: 255 -RSCLLDEALQLLNDMKSSPLCQPDVYTYSTIIKACVDAARFDLTDTMYKDMAERSISPN 313

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDII---------------------- 157
             T N V+  YGK G + +ME VLS M  S  CKPD+                       
Sbjct: 314 TVTQNIVLSGYGKAGRLDDMERVLSDMLDSVSCKPDVWTMNIILSLFGNRGEVELMERWY 373

Query: 158 -------------TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
                        T N+LI +YGKR+ +DKM  V + +       T  T+N++I  + +A
Sbjct: 374 EKFRGYGVEPETRTLNILIGAYGKRRMYDKMSAVMEHMRKLAFPWTTATYNNVIEAFAEA 433

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS--KLGK--DMK 260
              G  E+ F +M +    P   T+ C+I      D  SRA +    +   KL +  D+ 
Sbjct: 434 GDAGNMEHAFNQMRSEGMRPDTKTFCCLI------DGFSRAGQFHKVVGMVKLAERLDVP 487

Query: 261 VSTL--NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
           V+T   NA+L A        E + +F    +    PD+STY +L +AY K  M + +  L
Sbjct: 488 VNTPFHNAVLGACARADDLVEMERVFRRMKHTQCEPDASTYSILVEAYRKEGMTDKIYAL 547

Query: 319 LKRMEQNGIVP 329
               E   +VP
Sbjct: 548 --HQENPALVP 556



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 133/304 (43%), Gaps = 2/304 (0%)

Query: 43  RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
           R D   +   +T  L  R  +K   +AL  F+ +K      P   TY  L+    ++   
Sbjct: 165 RADAKAWACTVTEALADRVSSKNWQEALQVFEMLKEQPFYHPKEGTYMKLIVLLGRSGQP 224

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNL 161
            + + LF E+ +    P    Y  ++ AY ++ ++ E   +L+ MKS+  C+PD+ T++ 
Sbjct: 225 TRAHQLFDEMLQQGCQPTPELYTALIGAYCRSCLLDEALQLLNDMKSSPLCQPDVYTYST 284

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM-TAM 220
           +I +      FD  + ++K +      P   T N ++  YGKA      E V   M  ++
Sbjct: 285 IIKACVDAARFDLTDTMYKDMAERSISPNTVTQNIVLSGYGKAGRLDDMERVLSDMLDSV 344

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
              P   T   I++++G    V      +++    G + +  TLN ++ AY    +  + 
Sbjct: 345 SCKPDVWTMNIILSLFGNRGEVELMERWYEKFRGYGVEPETRTLNILIGAYGKRRMYDKM 404

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALET 340
             + E+   +     ++TY  + +A+ +A     ++    +M   G+ P+ + F   ++ 
Sbjct: 405 SAVMEHMRKLAFPWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMRPDTKTFCCLIDG 464

Query: 341 FSSS 344
           FS +
Sbjct: 465 FSRA 468


>gi|242047208|ref|XP_002461350.1| hypothetical protein SORBIDRAFT_02g001400 [Sorghum bicolor]
 gi|241924727|gb|EER97871.1| hypothetical protein SORBIDRAFT_02g001400 [Sorghum bicolor]
          Length = 560

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 170/365 (46%), Gaps = 42/365 (11%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q +Y    G + KLI ++G+ GQ   A  LF EM   GC+P P +Y ALI A+    
Sbjct: 196 LKEQPFYHPKEGTFMKLIVLLGRSGQPARAHQLFDEMLQQGCQPTPGLYTALIGAYC--- 252

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  L  AL     MKG   C+P++ TY+ +++AC  A   D ++ ++K++ E  +AP+
Sbjct: 253 -RSGLLDDALQLLNDMKGSPLCQPDVYTYSTIIKACVDATRFDLIDVMYKDMAERSIAPN 311

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             T N V+  YGK G + +ME VLS M  S  CKPD+ T N+++  +G +   + ME+ +
Sbjct: 312 TVTQNIVLSGYGKAGRLDDMEKVLSDMLDSTACKPDVWTMNIILSLFGNKGQVELMEKWY 371

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           +       +P   T N +I  YGK R+  K   V + M  + +  +  TY  +I  +   
Sbjct: 372 EKFRSYGIEPETRTLNILIGAYGKKRMYDKMSAVMEYMRKLAFPWTTATYNNVIEAFAEA 431

Query: 240 DNVSRAREIFDEL-------------------SKLGKDMKV----------------STL 264
            +       F+++                   SK G+  KV                S  
Sbjct: 432 GDAKNMEHTFNQMRSEGMKPDTKTFCCLINGFSKAGQFHKVVGMVKLAERLDVPANTSFH 491

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           NA+L A        E + +F +  +    PD+ TY +L +AY K  M + +  L    E 
Sbjct: 492 NAILGACARADDLMEMERVFRHMKHTQCDPDAVTYSILVEAYRKEGMTDKIYAL--HQEN 549

Query: 325 NGIVP 329
             +VP
Sbjct: 550 PALVP 554



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 135/306 (44%), Gaps = 6/306 (1%)

Query: 43  RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
           R +   +   +T  L  R  +K   +AL  F+ +K      P   T+  L+    ++   
Sbjct: 163 RAEAKAWACTVTEALADRVTSKNWQEALQVFEMLKEQPFYHPKEGTFMKLIVLLGRSGQP 222

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK-SNQCKPDIITFNL 161
            + + LF E+ +    P    Y  ++ AY ++G++ +   +L+ MK S  C+PD+ T++ 
Sbjct: 223 ARAHQLFDEMLQQGCQPTPGLYTALIGAYCRSGLLDDALQLLNDMKGSPLCQPDVYTYST 282

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM---T 218
           +I +      FD ++ ++K +      P   T N ++  YGKA      E V   M   T
Sbjct: 283 IIKACVDATRFDLIDVMYKDMAERSIAPNTVTQNIVLSGYGKAGRLDDMEKVLSDMLDST 342

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           A K  P   T   I++++G    V    + +++    G + +  TLN ++ AY    +  
Sbjct: 343 ACK--PDVWTMNIILSLFGNKGQVELMEKWYEKFRSYGIEPETRTLNILIGAYGKKRMYD 400

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           +   + E    +     ++TY  + +A+ +A   + ++    +M   G+ P+ + F   +
Sbjct: 401 KMSAVMEYMRKLAFPWTTATYNNVIEAFAEAGDAKNMEHTFNQMRSEGMKPDTKTFCCLI 460

Query: 339 ETFSSS 344
             FS +
Sbjct: 461 NGFSKA 466


>gi|414864365|tpg|DAA42922.1| TPA: hypothetical protein ZEAMMB73_846849 [Zea mays]
          Length = 485

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 174/344 (50%), Gaps = 5/344 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           ++KQ WY   +  Y++L+ ++GK  Q   A  LF EM +   RP   VY ALI A+ ++ 
Sbjct: 115 LRKQHWYEPRSQTYARLLMMLGKCRQPGPAAGLFREMLSERLRPTADVYTALIGAYGYS- 173

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
                L  AL   ++MKG   CKP+  T+++L+  CA++R  D + A+  E+    +  +
Sbjct: 174 ---GLLEHALAAVEQMKGAADCKPDGYTFSVLVDCCAKSRRFDLIPAVLDEMSYLGIECN 230

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
              +N ++D YGK  M +EME  LS M +S    PDI T N ++ +YG     D+ME+ +
Sbjct: 231 SVIHNAIIDGYGKAAMFEEMEGALSTMLESGSNVPDIYTMNSVVGAYGNHGRTDEMEKSY 290

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
                   +P   TFN MI +YGKA +  K   +F+ M    ++P+ +T+  +I  +G  
Sbjct: 291 SEFQLMGVEPDTKTFNIMIRSYGKAGMYVKMMSIFRYMKKRFFSPTAVTFNTVIECFGRA 350

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            ++ +    F  +   G      T  +++  Y   GL  +   +   + N  V  D+  +
Sbjct: 351 GDIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGLLDKVAGVIRQTENTNVVLDTPFF 410

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
             +  AY K+   ++++++L+ M++    P++  +   ++ +++
Sbjct: 411 NCVISAYAKSGDIKIMEEMLQLMKEKRCKPDRITYATMIQAYTA 454



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 130/330 (39%), Gaps = 40/330 (12%)

Query: 55  AHLHTRDKAKALAK---ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE 111
           A L   D A A  +   AL  F+ ++     +P   TY  LL    + R       LF+E
Sbjct: 91  AVLEALDSAVAACRWESALEIFELLRKQHWYEPRSQTYARLLMMLGKCRQPGPAAGLFRE 150

Query: 112 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK-SNQCKPDIITF----------- 159
           +    L P    Y  ++ AYG +G+++   + + +MK +  CKPD  TF           
Sbjct: 151 MLSERLRPTADVYTALIGAYGYSGLLEHALAAVEQMKGAADCKPDGYTFSVLVDCCAKSR 210

Query: 160 ------------------------NLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTF 194
                                   N +ID YGK   F++ME    +++ S    P + T 
Sbjct: 211 RFDLIPAVLDEMSYLGIECNSVIHNAIIDGYGKAAMFEEMEGALSTMLESGSNVPDIYTM 270

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           NS++  YG      + E  + +   M   P   T+  +I  YG      +   IF  + K
Sbjct: 271 NSVVGAYGNHGRTDEMEKSYSEFQLMGVEPDTKTFNIMIRSYGKAGMYVKMMSIFRYMKK 330

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
                   T N ++E +   G   + +  F      GV P+  TY  L   Y+KA + + 
Sbjct: 331 RFFSPTAVTFNTVIECFGRAGDIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGLLDK 390

Query: 315 VQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           V  ++++ E   +V +  FF   +  ++ S
Sbjct: 391 VAGVIRQTENTNVVLDTPFFNCVISAYAKS 420


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 163/317 (51%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L+  +G++G TR  M L  EM++ G RP+   Y   I A      +A+ +  A G F
Sbjct: 238 YSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRA----LGRARRIDDAWGIF 293

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M   E C P+++TY +L+ A   A  +D+   L+ ++  S  +PD  TY  +MD +GK
Sbjct: 294 KEMDD-EGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGK 352

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++ ++   + M+ +   PD++T+ +LI++  K    D+   +   +      P L T
Sbjct: 353 VGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHT 412

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N+MI    KAR   +A  + + M ++   P+  +Y   I  YG   + ++A + F+ + 
Sbjct: 413 YNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMK 472

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           K G    ++  NA L      G  +EA+ +F + H  G++PDS TY +L K Y+KA   +
Sbjct: 473 KRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQID 532

Query: 314 LVQKLLKRMEQNGIVPN 330
              +LL  M   G  P+
Sbjct: 533 KATQLLSEMISKGCEPD 549



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 145/298 (48%), Gaps = 5/298 (1%)

Query: 14   YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
            Y+ L+   GK  +      L+SEMR+ GC P+   +N +I+A + + +  KAL     Y+
Sbjct: 834  YNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDL---YY 890

Query: 74   QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            + M G     P   TY  L+    +A   +Q   +F+E+ +    P+   YN +++ +GK
Sbjct: 891  ELMSG--DFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGK 948

Query: 134  NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            +G I     +  +M     +PD+ ++ +L++        D+  Q F+ L  +   P   +
Sbjct: 949  SGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVS 1008

Query: 194  FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            +N +I   GK+R   +A  +F +M     +P   TY  +I   G    V  A ++++EL 
Sbjct: 1009 YNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQ 1068

Query: 254  KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
             +G +  V T NA++  + ++G   +A  +F+    +G +P++ T+  L   Y +A +
Sbjct: 1069 LVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAGL 1126



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 145/309 (46%), Gaps = 7/309 (2%)

Query: 27   TRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI 86
            T  A+ LF +M+++G  P+   YN L+ AH     K+K + K    + +M+    C+PN 
Sbjct: 812  TEKALELFEDMKSAGTHPNNFTYNLLLDAH----GKSKRINKLYDLYSEMRS-RGCEPNA 866

Query: 87   VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 146
            +T+NI++ A  ++ N+++   L+ EL     +P   TY  ++D   K G  ++   +   
Sbjct: 867  ITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEE 926

Query: 147  MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG-KAR 205
            M    C P+ + +N+LI+ +GK    D   ++FK ++    +P L ++  ++       R
Sbjct: 927  MLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGR 986

Query: 206  LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
            +    +Y F+++      P  ++Y  II   G    +  A  +F E+   G    + T N
Sbjct: 987  IDEAVQY-FEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYN 1045

Query: 266  AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            A++    + G    A  ++E    +G+ P   TY  L + ++ +  K+    + K+M   
Sbjct: 1046 ALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVV 1105

Query: 326  GIVPNKRFF 334
            G  PN   F
Sbjct: 1106 GCSPNTETF 1114



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 134/292 (45%), Gaps = 5/292 (1%)

Query: 39   NSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
            NS C+ D  V   LI   L  R KA         F K  G+    P + +YN L+     
Sbjct: 754  NSVCQDD-HVMLPLIKV-LCKRKKALDAQNVFDKFTKNLGIH---PTLESYNCLMDGLLG 808

Query: 99   ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
            +   ++   LF+++  +   P+ +TYN ++DA+GK+  I ++  + S M+S  C+P+ IT
Sbjct: 809  SNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAIT 868

Query: 159  FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
             N++I +  K    +K   ++  LM     PT  T+  +I    KA    +A  +F++M 
Sbjct: 869  HNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEML 928

Query: 219  AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
                 P+ + Y  +I  +G    +  A E+F ++ K G    + +   ++E  C+ G   
Sbjct: 929  DYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRID 988

Query: 279  EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            EA   FE     G+ PD+ +Y  +     K+   +    L   M+  GI P+
Sbjct: 989  EAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPD 1040



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 153/367 (41%), Gaps = 38/367 (10%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D   Y+ LI  + K G    A  +   M   G  P+   YN +I   L  R   +AL
Sbjct: 371 YAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEAL 430

Query: 67  -------------------------------AKALGYFQKMKGMERCKPNIVTYNILLRA 95
                                          AKA+  F+ MK      P+I   N  L  
Sbjct: 431 ELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKK-RGIMPSIAACNASLYT 489

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
            A+   + +   +F +LH+  L+PD  TYN +M  Y K G I +   +LS M S  C+PD
Sbjct: 490 LAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPD 549

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
           ++  N LI++  K    D   ++F  L + K  PT+ T+N ++   GK     KA  +F 
Sbjct: 550 VMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFG 609

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            MT     P+ IT+  ++      D V  A ++F  ++ +  +  V T N ++      G
Sbjct: 610 SMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREG 669

Query: 276 LPTEADLLFENSHNMG--VTPDSSTYKLLYKAYTK-ANMKELVQKLLKRMEQNGIVPNKR 332
                D  F   H M   ++PD  T   L     +   +++ ++ +++ + Q  +  N +
Sbjct: 670 ---RIDYAFWFFHQMKKFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQ 726

Query: 333 FFLEALE 339
           F+ E +E
Sbjct: 727 FWGELME 733



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 145/330 (43%), Gaps = 7/330 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQK+  Y  +   Y  +   +  KG    A +   +M   G   +   YN LI  HL   
Sbjct: 157 MQKKVIY-RNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLI--HLLLP 213

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
                  +AL  +++M   E  KP++ TY+ L+ A  +  +  ++  L +E+    L P+
Sbjct: 214 GFCN---EALKVYKRMIS-EGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPN 269

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           IYTY   + A G+   I +   +   M    C PD+IT+ +LID+       DK ++++ 
Sbjct: 270 IYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYV 329

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +  S   P   T+ +++  +GK       +  + +M    Y P  +TY  +I       
Sbjct: 330 KMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSG 389

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           +V RA ++ D ++  G    + T N M+          EA  L EN  ++GV P + +Y 
Sbjct: 390 DVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYV 449

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           L    Y K+          + M++ GI+P+
Sbjct: 450 LFIDYYGKSGDPAKAIDTFETMKKRGIMPS 479



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 147/363 (40%), Gaps = 30/363 (8%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT--RDKAKAL----- 66
           Y+  I  +G+  +   A  +F EM + GC PD   Y  LI A       DKAK L     
Sbjct: 273 YTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMR 332

Query: 67  -----------AKALGYFQKMKGMERCK------------PNIVTYNILLRACAQARNVD 103
                         +  F K+  +E  K            P++VTY IL+ A  ++ +VD
Sbjct: 333 ASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVD 392

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +   +   +    + P+++TYN ++    K   + E   +L  M+S   KP   ++ L I
Sbjct: 393 RAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFI 452

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           D YGK     K    F+++      P++   N+ +    +     +AE +F  +     +
Sbjct: 453 DYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLS 512

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
           P  +TY  ++  Y     + +A ++  E+   G +  V  +N+++      G    A  +
Sbjct: 513 PDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKM 572

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
           F    N+ + P   TY +L     K        +L   M ++G  PN   F   L+  S 
Sbjct: 573 FGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSK 632

Query: 344 SLA 346
           + A
Sbjct: 633 NDA 635



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 144/355 (40%), Gaps = 59/355 (16%)

Query: 21  MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KG 78
           + + G+   A  +F+++   G  PD   YN L+  +     KA  + KA     +M  KG
Sbjct: 490 LAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCY----SKAGQIDKATQLLSEMISKG 545

Query: 79  MERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIK 138
              C+P+++  N L+    +A  VD    +F  L    LAP + TYN ++   GK G I 
Sbjct: 546 ---CEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKIL 602

Query: 139 EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 198
           +   +   M  + C P+ ITFN L+D   K  A D   ++F  +      P + T+N++I
Sbjct: 603 KALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTII 662

Query: 199 INYGKARLQGKAEYVFQKMTAMK--YTPSFITY--------------------------- 229
             YG  R +G+ +Y F     MK   +P ++T                            
Sbjct: 663 --YGLIR-EGRIDYAFWFFHQMKKFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQA 719

Query: 230 -------------ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
                        ECI+T     + +S A EI    S    D     +  +++  C    
Sbjct: 720 CLQTNSQFWGELMECILTEAEIEEAISFA-EILVCNSVCQDD---HVMLPLIKVLCKRKK 775

Query: 277 PTEADLLFEN-SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +A  +F+  + N+G+ P   +Y  L      +N  E   +L + M+  G  PN
Sbjct: 776 ALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPN 830



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 128/325 (39%), Gaps = 40/325 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  L+   GK G        ++EM   G  PD   Y  LI A   + D  +A    
Sbjct: 339 DRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFD-- 396

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +      KG+    PN+ TYN ++    +AR +D+   L + +    + P  ++Y   +D
Sbjct: 397 MLDVMTTKGI---FPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFID 453

Query: 130 AYGKN-----------------------------------GMIKEMESVLSRMKSNQCKP 154
            YGK+                                   G I E E + + +      P
Sbjct: 454 YYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSP 513

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           D +T+N+L+  Y K    DK  Q+   ++    +P +   NS+I    KA     A  +F
Sbjct: 514 DSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMF 573

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
            ++  +K  P+ +TY  ++T  G    + +A E+F  +++ G      T N++L+    N
Sbjct: 574 GRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKN 633

Query: 275 GLPTEADLLFENSHNMGVTPDSSTY 299
                A  +F     M   PD  TY
Sbjct: 634 DAVDLALKMFCRMTMMNCNPDVLTY 658



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 148/369 (40%), Gaps = 45/369 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  +GK+G+   A+ LF  M  SGC P+   +N+L    L    K  A+  AL  F
Sbjct: 588 YNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSL----LDCLSKNDAVDLALKMF 643

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M  M  C P+++TYN ++    +   +D     F ++ +  L+PD  T   ++    +
Sbjct: 644 CRMT-MMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQM-KKFLSPDYVTLCTLIPGVVR 701

Query: 134 NGMIKE------------------------MESVLSRMKSNQ-------------CKPDI 156
           +G +++                        ME +L+  +  +             C+ D 
Sbjct: 702 HGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSVCQDDH 761

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           +   L+     +++A D      K   +    PTL ++N ++     +    KA  +F+ 
Sbjct: 762 VMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFED 821

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC-MNG 275
           M +    P+  TY  ++  +G    +++  +++ E+   G +    T N ++ A    N 
Sbjct: 822 MKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNN 881

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335
           L    DL +E       +P   TY  L     KA   E   K+ + M   G  PN   + 
Sbjct: 882 LNKALDLYYELMSG-DFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYN 940

Query: 336 EALETFSSS 344
             +  F  S
Sbjct: 941 ILINGFGKS 949



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 68/128 (53%), Gaps = 5/128 (3%)

Query: 10   DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
            DT  Y+ +I  +GK  +   A+ LFSEM+N G  PD   YNALI  HL    K     K 
Sbjct: 1005 DTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALIL-HLGIAGKVDVAVKM 1063

Query: 70   LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                Q + G+E   P++ TYN L+R  + + N DQ  ++FK++     +P+  T+  + +
Sbjct: 1064 YEELQ-LVGLE---PSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPN 1119

Query: 130  AYGKNGMI 137
             Y + G++
Sbjct: 1120 KYPRAGLV 1127



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/276 (20%), Positives = 112/276 (40%), Gaps = 1/276 (0%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A  YF+ +  +          N +L    + R ++ +  +F  + + ++  ++ TY  + 
Sbjct: 114 AFSYFKIVSQLTNFVHTTDACNYMLEILREQRRIEDMVFVFDLMQKKVIYRNLTTYMTIF 173

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            A    G I      L +M       +  ++N LI         + + +V+K ++    K
Sbjct: 174 KALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLLLPGFCNEAL-KVYKRMISEGMK 232

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P++ T++++++  G+     K   + ++M ++   P+  TY   I   G    +  A  I
Sbjct: 233 PSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGI 292

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F E+   G    V T   +++A C  G   +A  L+        +PD  TY  L   + K
Sbjct: 293 FKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGK 352

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
               E V++    ME +G  P+   +   +E    S
Sbjct: 353 VGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKS 388



 Score = 41.2 bits (95), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 3    KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
            K R    D   Y+ LI  +G  G+  +A+ ++ E++  G  P    YNALI  H  + +K
Sbjct: 1033 KNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNK 1092

Query: 63   AKALAKALGYFQKMKGMERCKPNIVTY 89
             +A +     F+KM  +  C PN  T+
Sbjct: 1093 DQAFS----VFKKMM-VVGCSPNTETF 1114


>gi|168016406|ref|XP_001760740.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688100|gb|EDQ74479.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 466

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 160/339 (47%), Gaps = 5/339 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           Q WY A+   Y KL+ ++ +  Q + A  LF  +     RP   ++ ALIT       K+
Sbjct: 113 QEWYTAEVSTYVKLLTMLARVKQPQAASNLFDFLLQDKLRPTLEIFTALITVF----TKS 168

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L KA   F++M+  + C P+   Y  +++ C  A   DQ   LF E+    + P I T
Sbjct: 169 NLLKKAFEVFEQMRLFDGCLPDKYAYTTMIKGCCDAGLYDQAKKLFNEMMREGVEPTIVT 228

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++  YGK G+  E+E +LS M++N   PD IT+N LI  +G      +MEQ ++ L+
Sbjct: 229 YNTLIFGYGKAGLFAEIEYLLSLMEANGITPDTITWNTLIRVFGLHNRIPEMEQAYEGLL 288

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                    T NS+I  YG+A L GK E V   M    Y  + +TY  II +YG    + 
Sbjct: 289 AQGLMADEVTLNSLIGTYGRAGLYGKMECVTDFMRRYSYPMTTVTYNIIIEIYGKARKIE 348

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           +    F  +   G      T +++L AY  +G   + + +     +     D++ Y    
Sbjct: 349 QMDTAFKRMKAQGLKPNCITFSSILSAYGKHGEWHKIEKIMRQVRHYNAA-DTAVYNAAI 407

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            A+ +A   E ++KL + M+  G+ P+   +   +E + 
Sbjct: 408 DAHRRALDFEAMEKLFEEMKMEGVAPDGITYTTLIEAYG 446



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 106/259 (40%), Gaps = 39/259 (15%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF+EM   G  P    YN LI  +     KA   A+ + Y   +       P+ +T+N L
Sbjct: 213 LFNEMMREGVEPTIVTYNTLIFGY----GKAGLFAE-IEYLLSLMEANGITPDTITWNTL 267

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +R       + ++   ++ L    L  D  T N ++  YG+ G+  +ME V   M+    
Sbjct: 268 IRVFGLHNRIPEMEQAYEGLLAQGLMADEVTLNSLIGTYGRAGLYGKMECVTDFMRRYSY 327

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
               +T+N++I+ YGK +  ++M+  FK +     KP   TF+S++  YGK     K E 
Sbjct: 328 PMTTVTYNIIIEIYGKARKIEQMDTAFKRMKAQGLKPNCITFSSILSAYGKHGEWHKIEK 387

Query: 213 V----------------------------------FQKMTAMKYTPSFITYECIITMYGY 238
           +                                  F++M      P  ITY  +I  YG 
Sbjct: 388 IMRQVRHYNAADTAVYNAAIDAHRRALDFEAMEKLFEEMKMEGVAPDGITYTTLIEAYGR 447

Query: 239 CDNVSRAREIFDELSKLGK 257
              + +ARE+ +E   L K
Sbjct: 448 VRKLQKARELQEEWDALKK 466



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 91/229 (39%), Gaps = 64/229 (27%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR--DKAKA----L 66
           Y+ LI   GK G      +L S M  +G  PD   +N LI    LH R  +  +A    L
Sbjct: 229 YNTLIFGYGKAGLFAEIEYLLSLMEANGITPDTITWNTLIRVFGLHNRIPEMEQAYEGLL 288

Query: 67  AKAL-----------------GYFQKMKG----MERCK-P-NIVTYNILLRACAQARNVD 103
           A+ L                 G + KM+     M R   P   VTYNI++    +AR ++
Sbjct: 289 AQGLMADEVTLNSLIGTYGRAGLYGKMECVTDFMRRYSYPMTTVTYNIIIEIYGKARKIE 348

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGM--------------------------- 136
           Q++  FK +    L P+  T++ ++ AYGK+G                            
Sbjct: 349 QMDTAFKRMKAQGLKPNCITFSSILSAYGKHGEWHKIEKIMRQVRHYNAADTAVYNAAID 408

Query: 137 -------IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
                   + ME +   MK     PD IT+  LI++YG+ +   K  ++
Sbjct: 409 AHRRALDFEAMEKLFEEMKMEGVAPDGITYTTLIEAYGRVRKLQKAREL 457


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 171/344 (49%), Gaps = 11/344 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++  Y  D   Y+ LI+ + +  + + A+  F +M+ +G +P    YN +I  +     K
Sbjct: 109 REEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLY---GKK 165

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            ++    L  F++MK  +  +P+  TYN  + ACA     ++   LF ++  S   PD  
Sbjct: 166 GRSWENILELFEEMKA-QGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRV 224

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++D YGK G   E  +VL  M+S  C P+I+T+N L+ ++G+    +   ++  S+
Sbjct: 225 TYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSM 284

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           +    +P + T+ S++  Y +A    +A  ++ +M     TP+  T+  +I M+G   N 
Sbjct: 285 VSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNF 344

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           S    IF+++   G +  + T N++L A+  NG+ +E   +F      G  PD +T+ +L
Sbjct: 345 SEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNIL 404

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLA 346
            +AY +    +    +   M Q G  P+       L TF++ LA
Sbjct: 405 IEAYGRCGSSDQALSIYDGMLQAGCTPD-------LATFNTLLA 441



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 166/335 (49%), Gaps = 6/335 (1%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           ++ ++G++ Q      LF  +R  G   D   Y +LI+A    R       +ALG+F++M
Sbjct: 88  MLRILGRESQLTTVSRLFKSLREEGYPLDVYAYTSLISALSRNRK----FKEALGFFEQM 143

Query: 77  KGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG 135
           K     +P++VTYN+++    +  R+ + +  LF+E+    + PD YTYN  + A     
Sbjct: 144 KEAGP-QPSLVTYNVIIDLYGKKGRSWENILELFEEMKAQGIQPDEYTYNTAITACASGS 202

Query: 136 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195
           + +E   + ++MKS+ C PD +T+N L+D YGK   +++   V K +  +   P + T+N
Sbjct: 203 LCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYN 262

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
            ++  +G+A L   A  +   M +    P   TY  +++ Y     V +A EI++++   
Sbjct: 263 ELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTS 322

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
                  T NA++  +  N   +E  ++FE+    GV PD  T+  L  A+ K  M   V
Sbjct: 323 NCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEV 382

Query: 316 QKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
            K+ + M++ G  P+K  F   +E +    +  Q+
Sbjct: 383 LKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQA 417



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 149/317 (47%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y++L++  G+ G    A  +   M + G  PD   Y +L++A+     +A  + +A+  +
Sbjct: 261 YNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAY----SRAGKVEQAMEIY 316

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+    C PN  T+N L+    + +N  ++  +F+++    + PDI T+N ++ A+GK
Sbjct: 317 NQMR-TSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGK 375

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           NGM  E+  V   MK    +PD  TFN+LI++YG+  + D+   ++  ++ +   P L T
Sbjct: 376 NGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLAT 435

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           FN+++    +      AE +  ++    Y P+ I Y  ++  Y     + + +E+ D L 
Sbjct: 436 FNTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTLH 495

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
            +        L   +  Y    L  EA+  F    + G   D+ST+  +   Y K  M +
Sbjct: 496 TIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMD 555

Query: 314 LVQKLLKRMEQNGIVPN 330
                   +   G+ P+
Sbjct: 556 KATDTFALLRSTGLEPD 572



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 156/331 (47%), Gaps = 6/331 (1%)

Query: 14  YSKLIAVMGKKGQT-RLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           Y+ +I + GKKG++    + LF EM+  G +PD   YN  ITA            +A   
Sbjct: 155 YNVIIDLYGKKGRSWENILELFEEMKAQGIQPDEYTYNTAITACA----SGSLCEEATEL 210

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F +MK    C P+ VTYN LL    +A   ++   + KE+  +   P+I TYN ++ A+G
Sbjct: 211 FTQMKS-SNCTPDRVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFG 269

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + G+      +   M S   +PD+ T+  L+ +Y +    ++  +++  +  S   P   
Sbjct: 270 RAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSF 329

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           TFN++I  +GK +   +   +F+ M A    P  +T+  ++  +G     S   ++F  +
Sbjct: 330 TFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGM 389

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            K G +   +T N ++EAY   G   +A  +++     G TPD +T+  L  A  +    
Sbjct: 390 KKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRW 449

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
           E  + +L  + ++   PN   +   L  +++
Sbjct: 450 EHAELILDELNRSSYKPNDIAYASMLHAYAN 480



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 140/346 (40%), Gaps = 40/346 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ L+   GK G     + +F  M+ +G  PD + +N LI A+       +AL+  
Sbjct: 362 DIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIY 421

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            G  Q       C P++ T+N LL A A+    +    +  EL+ S   P+   Y  ++ 
Sbjct: 422 DGMLQA-----GCTPDLATFNTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASMLH 476

Query: 130 AYGKNG-----------------------------------MIKEMESVLSRMKSNQCKP 154
           AY   G                                   ++ E E     M+ +    
Sbjct: 477 AYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLS 536

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           D  TFN +I  YGK+   DK    F  L  +  +P + T+N ++  YG+  +  K E   
Sbjct: 537 DTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATL 596

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           ++  A   TP  ++Y  +I  Y     +S A  IF E+   G      T N  +  Y   
Sbjct: 597 RECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNG 656

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           G+  EA  + ++ H  G  PD  TY+ L  AY K    E V+++LK
Sbjct: 657 GMFPEALSVVKHMHKTGCKPDEVTYRTLVDAYCKIGKFEEVERILK 702



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 129/268 (48%), Gaps = 1/268 (0%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           KAL  F  M+     +P+ VT  ++LR   +   +  V+ LFK L E     D+Y Y  +
Sbjct: 64  KALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVSRLFKSLREEGYPLDVYAYTSL 123

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-QAFDKMEQVFKSLMHSK 186
           + A  +N   KE      +MK    +P ++T+N++ID YGK+ ++++ + ++F+ +    
Sbjct: 124 ISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENILELFEEMKAQG 183

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P   T+N+ I       L  +A  +F +M +   TP  +TY  ++ +YG     + A 
Sbjct: 184 IQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAA 243

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G    + T N +L A+   GL   A  + ++  + G+ PD  TY  L  AY
Sbjct: 244 NVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAY 303

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFF 334
           ++A   E   ++  +M  +   PN   F
Sbjct: 304 SRAGKVEQAMEIYNQMRTSNCTPNSFTF 331



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 146/325 (44%), Gaps = 5/325 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+ V GK G    A  +  EM ++GC P+   YN L++A    R      A  
Sbjct: 222 DRVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAF--GRAGLCNAAAE 279

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +      KG+E   P++ TY  LL A ++A  V+Q   ++ ++  S   P+ +T+N ++ 
Sbjct: 280 MKDSMVSKGIE---PDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIG 336

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +GKN    EM  +   M++   +PDI+T+N L+ ++GK   + ++ +VF+ +  +  +P
Sbjct: 337 MHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEP 396

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              TFN +I  YG+     +A  ++  M     TP   T+  ++           A  I 
Sbjct: 397 DKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELIL 456

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DEL++           +ML AY   G   +   + +  H + V       K     Y+K 
Sbjct: 457 DELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKC 516

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
           ++ +  +     M  +G + +   F
Sbjct: 517 SLVDEAEDAFLAMRHHGYLSDTSTF 541



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 98/189 (51%), Gaps = 17/189 (8%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +   Y++DT  ++ +I++ GKKG    A   F+ +R++G  PD   YN L+   ++ R+ 
Sbjct: 530 RHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMG--MYGRE- 586

Query: 63  AKALAKALGYFQKMKGMER-C-----KPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
                   G ++K +   R C      P++V+YN ++ + ++   +     +F E+  + 
Sbjct: 587 --------GMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNG 638

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           + PD +TYN  +  Y   GM  E  SV+  M    CKPD +T+  L+D+Y K   F+++E
Sbjct: 639 IQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTLVDAYCKIGKFEEVE 698

Query: 177 QVFKSLMHS 185
           ++ K +  S
Sbjct: 699 RILKFIKSS 707


>gi|359480144|ref|XP_002269420.2| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Vitis vinifera]
 gi|297744374|emb|CBI37344.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  157 bits (396), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 165/354 (46%), Gaps = 40/354 (11%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q WY  ++GIY KLI ++GK  Q   A  LF  M + GC  +   Y AL++A+    
Sbjct: 128 LREQLWYRPNSGIYIKLIVMLGKCKQPEKAHALFLAMIDEGCVVNHEAYTALLSAY---- 183

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++    KA    +KMK    C+P++ TY++L+++C Q    D+V  L  ++    + P+
Sbjct: 184 SRSGLFDKAFSLLEKMKNTPDCQPDVHTYSVLIKSCLQVVAFDKVPVLLSDMANQGIKPN 243

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPD------------------------ 155
             TYN ++DAYGK     EMES L  M +  +C+PD                        
Sbjct: 244 TVTYNTLIDAYGKAKRFAEMESTLLEMLREGKCEPDVWTMNSTLRAFGSSGQIETMEKCY 303

Query: 156 -----------IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
                      I TFN+L+DSYGK + ++KM  V + +       T+ T+N +I  +G+A
Sbjct: 304 EKFQSAGIEPNIKTFNILLDSYGKAEKYEKMSAVMEYMQKYHFSWTIVTYNVVIDAFGRA 363

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
               + EY+F+ M + +  PS +T   ++  YG      +   +   +      + +   
Sbjct: 364 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGRAGKAEKIGGVLRFIENSDVMLDIVFF 423

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
           N +++AY   G   E   + E     G  PD  TY+ + KAY    M    ++L
Sbjct: 424 NCLVDAYGRLGCFAEMKGVLEMMKKKGCKPDKITYRTMIKAYKIGGMTSCAKEL 477



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 136/315 (43%), Gaps = 37/315 (11%)

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
           LH R  A     AL  F+ ++     +PN   Y  L+    + +  ++ +ALF  + +  
Sbjct: 109 LHERITALRWESALKVFELLREQLWYRPNSGIYIKLIVMLGKCKQPEKAHALFLAMIDEG 168

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN-QCKPDIITFNLLIDSYGKRQAFDKM 175
              +   Y  ++ AY ++G+  +  S+L +MK+   C+PD+ T+++LI S  +  AFDK+
Sbjct: 169 CVVNHEAYTALLSAYSRSGLFDKAFSLLEKMKNTPDCQPDVHTYSVLIKSCLQVVAFDKV 228

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKAR-------------LQGKA------------ 210
             +   + +   KP   T+N++I  YGKA+              +GK             
Sbjct: 229 PVLLSDMANQGIKPNTVTYNTLIDAYGKAKRFAEMESTLLEMLREGKCEPDVWTMNSTLR 288

Query: 211 -----------EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
                      E  ++K  +    P+  T+  ++  YG  +   +   + + + K     
Sbjct: 289 AFGSSGQIETMEKCYEKFQSAGIEPNIKTFNILLDSYGKAEKYEKMSAVMEYMQKYHFSW 348

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            + T N +++A+   G   + + LF    +  + P   T   L +AY +A   E +  +L
Sbjct: 349 TIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGRAGKAEKIGGVL 408

Query: 320 KRMEQNGIVPNKRFF 334
           + +E + ++ +  FF
Sbjct: 409 RFIENSDVMLDIVFF 423


>gi|168045050|ref|XP_001774992.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673739|gb|EDQ60258.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 385

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 157/330 (47%), Gaps = 5/330 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           ++ Q WY AD   Y KL+ ++ K  Q   A  +F  +     RP  +++ AL+T    + 
Sbjct: 24  VRAQEWYTADLSTYLKLLTMLAKAKQAAEASNVFDCLLEDKLRPTTAIFTALLTVFTQSN 83

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
                  KAL  F+ M+  E C P+  TY  +++ C +A    Q   +F E+    + P 
Sbjct: 84  Q----FKKALEIFESMRLYEGCVPDKYTYTAMIKGCCEAGLYVQARKIFDEMMIEGVKPS 139

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           I TYN ++  YGK G+ +E+E VLS M++N   PD +T+N LI  +G      +MEQ ++
Sbjct: 140 IVTYNILIHGYGKAGLFREVERVLSTMEANNVAPDTVTWNTLIRVFGLNCKIPEMEQAYE 199

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            L+    +P + T NS+I  YG A L  K E V Q M    Y  + ITY  I+  YG   
Sbjct: 200 GLLRQGLQPDMVTLNSLISAYGTAGLFEKMESVTQYMQRYNYPMTRITYNIIMEAYGRAG 259

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            V +  E +  +         ST  +ML AY  +G     + +   +       D++ Y 
Sbjct: 260 MVDQMEETWKRMKAEFVKPNSSTFCSMLSAYGRHGYWHNVEKVMRQARYFDAA-DTAVYN 318

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
               A+ +A   E ++K+ + M+  G  P+
Sbjct: 319 AAIDAFQRAQNFEDMEKIFEEMKLKGHAPD 348



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 136/313 (43%), Gaps = 75/313 (23%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMR-NSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           T I++ L+ V  +  Q + A+ +F  MR   GC PD   Y A+I        +A    +A
Sbjct: 69  TAIFTALLTVFTQSNQFKKALEIFESMRLYEGCVPDKYTYTAMIKGCC----EAGLYVQA 124

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQA---RNVDQV----------------NALFK 110
              F +M  +E  KP+IVTYNIL+    +A   R V++V                N L +
Sbjct: 125 RKIFDEMM-IEGVKPSIVTYNILIHGYGKAGLFREVERVLSTMEANNVAPDTVTWNTLIR 183

Query: 111 ------------ELHESIL----APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
                       + +E +L     PD+ T N ++ AYG  G+ ++MESV   M+      
Sbjct: 184 VFGLNCKIPEMEQAYEGLLRQGLQPDMVTLNSLISAYGTAGLFEKMESVTQYMQRYNYPM 243

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK-------ARLQ 207
             IT+N+++++YG+    D+ME+ +K +     KP   TF SM+  YG+        ++ 
Sbjct: 244 TRITYNIIMEAYGRAGMVDQMEETWKRMKAEFVKPNSSTFCSMLSAYGRHGYWHNVEKVM 303

Query: 208 GKAEY---------------------------VFQKMTAMKYTPSFITYECIITMYGYCD 240
            +A Y                           +F++M    + P  +TY  +I  Y    
Sbjct: 304 RQARYFDAADTAVYNAAIDAFQRAQNFEDMEKIFEEMKLKGHAPDDVTYSILIGAYERIR 363

Query: 241 NVSRAREIFDELS 253
            V +AR++ +E +
Sbjct: 364 RVDKARDLQEEWN 376



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 124/271 (45%), Gaps = 1/271 (0%)

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F+ ++  E    ++ TY  LL   A+A+   + + +F  L E  L P    +  ++  + 
Sbjct: 21  FELVRAQEWYTADLSTYLKLLTMLAKAKQAAEASNVFDCLLEDKLRPTTAIFTALLTVFT 80

Query: 133 KNGMIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           ++   K+   +   M+  + C PD  T+  +I    +   + +  ++F  +M    KP++
Sbjct: 81  QSNQFKKALEIFESMRLYEGCVPDKYTYTAMIKGCCEAGLYVQARKIFDEMMIEGVKPSI 140

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+N +I  YGKA L  + E V   M A    P  +T+  +I ++G    +    + ++ 
Sbjct: 141 VTYNILIHGYGKAGLFREVERVLSTMEANNVAPDTVTWNTLIRVFGLNCKIPEMEQAYEG 200

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           L + G    + TLN+++ AY   GL  + + + +            TY ++ +AY +A M
Sbjct: 201 LLRQGLQPDMVTLNSLISAYGTAGLFEKMESVTQYMQRYNYPMTRITYNIIMEAYGRAGM 260

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            + +++  KRM+   + PN   F   L  + 
Sbjct: 261 VDQMEETWKRMKAEFVKPNSSTFCSMLSAYG 291



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 97/207 (46%), Gaps = 18/207 (8%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  ++ LI V G   +       +  +   G +PD    N+LI+A+             
Sbjct: 174 DTVTWNTLIRVFGLNCKIPEMEQAYEGLLRQGLQPDMVTLNSLISAY-----------GT 222

Query: 70  LGYFQKMKG----MERCKPNI--VTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            G F+KM+     M+R    +  +TYNI++ A  +A  VDQ+   +K +    + P+  T
Sbjct: 223 AGLFEKMESVTQYMQRYNYPMTRITYNIIMEAYGRAGMVDQMEETWKRMKAEFVKPNSST 282

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           +  ++ AYG++G    +E V+ + +      D   +N  ID++ + Q F+ ME++F+ + 
Sbjct: 283 FCSMLSAYGRHGYWHNVEKVMRQARYFDA-ADTAVYNAAIDAFQRAQNFEDMEKIFEEMK 341

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKA 210
                P   T++ +I  Y + R   KA
Sbjct: 342 LKGHAPDDVTYSILIGAYERIRRVDKA 368


>gi|218192673|gb|EEC75100.1| hypothetical protein OsI_11265 [Oryza sativa Indica Group]
          Length = 588

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 164/331 (49%), Gaps = 5/331 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q +Y    G + KL+ ++G+ GQ   A +LF EM   GC+P P +Y ALI A+    
Sbjct: 137 LKEQPFYHPKEGTFMKLLLLLGRSGQPSRARYLFDEMLQQGCQPTPELYTALIAAYC--- 193

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +   L  A      MK    C+P++ TY+ +++AC  A   D V+A++K++ +  +AP+
Sbjct: 194 -RNGLLDDAFRLLADMKASPVCQPDVYTYSTIIKACVDASRFDIVDAMYKDMADRSIAPN 252

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             T N V+  YG+ G + +ME VLS M  S   KPD+ T N+++  +G R   + ME+ +
Sbjct: 253 TVTQNIVLSGYGRAGRLDDMEKVLSAMLDSTTSKPDVWTMNIILSLFGNRGQIESMEKWY 312

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           +       +P   T N +I  YGK R+  K   V + M  + +  +  T+  +I  +   
Sbjct: 313 EKFRGYGIEPETRTLNILIGAYGKKRMYDKMSAVMEYMRKLAFPWTTATFNNVIEAFADA 372

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            +       F+++   G      T   ++  +   GL  +   + + +  +GV  D++ +
Sbjct: 373 GDAKNMEHTFNQMRAEGMKPDTKTFCCLINGFGNAGLFHKVVGMVKLAERLGVPMDTTFH 432

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +  A  KA     ++++  RM+Q   VP+
Sbjct: 433 NAVLMACVKAEDLMEMERVFMRMKQIQCVPD 463



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/304 (20%), Positives = 134/304 (44%), Gaps = 2/304 (0%)

Query: 43  RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
           R +   +   +T  L  R  AK   +AL  FQ +K      P   T+  LL    ++   
Sbjct: 104 RAEAKAWACTVTEALADRIDAKNWQEALQVFQMLKEQPFYHPKEGTFMKLLLLLGRSGQP 163

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNL 161
            +   LF E+ +    P    Y  ++ AY +NG++ +   +L+ MK++  C+PD+ T++ 
Sbjct: 164 SRARYLFDEMLQQGCQPTPELYTALIAAYCRNGLLDDAFRLLADMKASPVCQPDVYTYST 223

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA-RLQGKAEYVFQKMTAM 220
           +I +      FD ++ ++K +      P   T N ++  YG+A RL    + +   + + 
Sbjct: 224 IIKACVDASRFDIVDAMYKDMADRSIAPNTVTQNIVLSGYGRAGRLDDMEKVLSAMLDST 283

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
              P   T   I++++G    +    + +++    G + +  TLN ++ AY    +  + 
Sbjct: 284 TSKPDVWTMNIILSLFGNRGQIESMEKWYEKFRGYGIEPETRTLNILIGAYGKKRMYDKM 343

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALET 340
             + E    +     ++T+  + +A+  A   + ++    +M   G+ P+ + F   +  
Sbjct: 344 SAVMEYMRKLAFPWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMKPDTKTFCCLING 403

Query: 341 FSSS 344
           F ++
Sbjct: 404 FGNA 407


>gi|224112076|ref|XP_002316075.1| predicted protein [Populus trichocarpa]
 gi|222865115|gb|EEF02246.1| predicted protein [Populus trichocarpa]
          Length = 434

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 168/342 (49%), Gaps = 5/342 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q +Y      Y KL+ ++G+ GQ + A  LF EM   G  P   +Y AL+ A+    
Sbjct: 77  LKEQPFYQPKEATYMKLLVLLGRCGQPQRAHQLFDEMVEEGIEPTTELYTALLAAYC--- 133

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +   + +      +MK + RC+P++ TY+ LL+AC  A   + ++ L++E+ E +++P+
Sbjct: 134 -RNNLIDEGFSIINQMKSLPRCQPDVYTYSTLLKACVDASRFELIDTLYQEMDERLISPN 192

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             T N V+  YG+ GM  +ME VLS M +S  CKPD+ T N+++  +G     D ME+ +
Sbjct: 193 TVTQNVVLSGYGRVGMYDQMERVLSEMLESAACKPDVWTMNIILSVFGNEGQIDLMERWY 252

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           +   +   +P   TFN +I  YGK R+  K   V + M  +++  +  TY  +I  +   
Sbjct: 253 EKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKVQFPWTTSTYNNVIEAFADV 312

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            +       FD++          T   ++  Y   GL  +     + +    +  ++S +
Sbjct: 313 GDAKNMEYAFDQMRAESMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTSFF 372

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
             +  A  KA+    ++++ KRM+     P+ R +   +E +
Sbjct: 373 NAVISACAKADDLMEMERVFKRMKDKQCPPDSRTYSIMVEAY 414


>gi|334188265|ref|NP_199684.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635750|sp|Q9FKC3.2|PP424_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g48730, chloroplastic; Flags: Precursor
 gi|332008334|gb|AED95717.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 508

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 167/362 (46%), Gaps = 40/362 (11%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q WY  + GIY KLI ++GK  Q   A  LF EM N GC  +  VY AL++A+    
Sbjct: 140 LREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAY---- 195

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++     A    ++MK    C+P++ TY+IL+++  Q    D+V  L  ++    + P+
Sbjct: 196 SRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPN 255

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPD------------------------ 155
             TYN ++DAYGK  M  EMES L +M   + CKPD                        
Sbjct: 256 TITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCY 315

Query: 156 -----------IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
                      I TFN+L+DSYGK   + KM  V + +       T+ T+N +I  +G+A
Sbjct: 316 EKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRA 375

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
               + EY+F+ M + +  PS +T   ++  YG      +   +   +      + +   
Sbjct: 376 GDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFF 435

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N +++AY       E   + E     G  PD  TY+ + KAY  + M   V++L   +E 
Sbjct: 436 NCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVVES 495

Query: 325 NG 326
            G
Sbjct: 496 VG 497



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 120/256 (46%), Gaps = 31/256 (12%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAH---------------LHTRDKAK-------ALAKAL 70
           L S+MR  G RP+   YN LI A+               +   D  K       +  +A 
Sbjct: 243 LLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAF 302

Query: 71  GYFQKMKGMERC---------KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           G   +++ ME C         +PNI T+NILL +  ++ N  +++A+ + + +   +  I
Sbjct: 303 GGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTI 362

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TYN V+DA+G+ G +K+ME +   M+S +  P  +T   L+ +YG+    DK+  V + 
Sbjct: 363 VTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRF 422

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           + +S  +  L  FN ++  YG+     + + V + M    + P  ITY  ++  Y     
Sbjct: 423 IENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGM 482

Query: 242 VSRAREIFDELSKLGK 257
            +  +E+   +  +G+
Sbjct: 483 TTHVKELHGVVESVGE 498



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 138/315 (43%), Gaps = 37/315 (11%)

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
           LH R  A     A+  F+ ++     KPN+  Y  L+    + +  ++ + LF+E+    
Sbjct: 121 LHERITALRWESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEG 180

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKM 175
              +   Y  ++ AY ++G      ++L RMKS+  C+PD+ T+++LI S+ +  AFDK+
Sbjct: 181 CVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKV 240

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARL----------------------------- 206
           + +   +     +P   T+N++I  YGKA++                             
Sbjct: 241 QDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLR 300

Query: 207 ----QGKAEYV---FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
                G+ E +   ++K  +    P+  T+  ++  YG   N  +   + + + K     
Sbjct: 301 AFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSW 360

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            + T N +++A+   G   + + LF    +  + P   T   L +AY +A+  + +  +L
Sbjct: 361 TIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVL 420

Query: 320 KRMEQNGIVPNKRFF 334
           + +E + I  +  FF
Sbjct: 421 RFIENSDIRLDLVFF 435



 Score = 41.2 bits (95), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 38/197 (19%), Positives = 86/197 (43%), Gaps = 8/197 (4%)

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           KP++  +  LI   GK +  +K  ++F+ +++         + +++  Y ++   G+ + 
Sbjct: 147 KPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRS---GRFDA 203

Query: 213 VFQKMTAMKYT----PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            F  +  MK +    P   TY  +I  +       + +++  ++ + G      T N ++
Sbjct: 204 AFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLI 263

Query: 269 EAYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +AY    +  E +  L +        PDS T     +A+      E+++   ++ + +GI
Sbjct: 264 DAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGI 323

Query: 328 VPNKRFFLEALETFSSS 344
            PN R F   L+++  S
Sbjct: 324 EPNIRTFNILLDSYGKS 340


>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 754

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 170/345 (49%), Gaps = 6/345 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ+Q W   +  IY+ +I+++G++G    +  +F EM   G       Y ALI ++    
Sbjct: 132 MQRQIWCKPNEHIYTIIISLLGREGLLEKSTEIFEEMPTHGVPRSVFSYTALINSY---- 187

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAP 119
            +      +L   ++MK  E+  P+I+TYN ++ +CA+   N + + +LF E+    + P
Sbjct: 188 GRHGQYEVSLELLERMK-KEKVTPSILTYNTVINSCARGGLNWEGLLSLFAEMRHEGIQP 246

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           DI TYN +++A    G+  E E V   M      PDI T+  L++++GK    +K+ ++ 
Sbjct: 247 DIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGKLNKLEKVSELL 306

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           K +  S   P + ++N ++  Y        A  VF++M   +  P+ +TY  ++ +YG  
Sbjct: 307 KEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYGGH 366

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
                 RE+F E+     +  V T N ++E +   G   E   LF +     V P+  TY
Sbjct: 367 GRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTY 426

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           + L  A  K  + E  +K+L  M++ GIVP+ + +   +E +  +
Sbjct: 427 EGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQA 471



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 150/326 (46%), Gaps = 11/326 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y  L+   GK  +      L  EM +SG  PD S YN L+ A+    D    + 
Sbjct: 280 VPDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGD----IR 335

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            A+G F++M+   RC PN VTY++LL         D V  LF E+  S   PD+ TYN +
Sbjct: 336 HAMGVFRQMQ-EARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVL 394

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++ +G+ G  KE+ ++   M     +P++ T+  LI + GK    +  +++   L+H  E
Sbjct: 395 IEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKI---LLHMDE 451

Query: 188 KPTLPT---FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
           K  +P+   +  +I  YG+A    +A  +F  M  M   P+  TY  +I M+        
Sbjct: 452 KGIVPSTKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKE 511

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           +  I  ++ + G      + N ++E Y   G   EA   +         PD  T++ +  
Sbjct: 512 SEAIMWKMGESGVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAVLS 571

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
            Y  A + +  ++  + +  +GI+P+
Sbjct: 572 VYCTAGLVDESEEQFREIRASGILPS 597



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 156/342 (45%), Gaps = 30/342 (8%)

Query: 33  LFSEMRNSGCRPDPSVYNALITA--HLHTRDKAKALAKALG----------------YFQ 74
           LF+EMR+ G +PD   YN L+ A  +    D+A+ + + +                  F 
Sbjct: 235 LFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFG 294

Query: 75  KMKGMERCK------------PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           K+  +E+              P+I +YN+LL A A   ++     +F+++ E+   P+  
Sbjct: 295 KLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAV 354

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY+ +++ YG +G   ++  +   MK +  +PD+ T+N+LI+ +G+   F ++  +F  +
Sbjct: 355 TYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDM 414

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           +    +P + T+  +I   GK  L   A+ +   M      PS   Y  +I  YG   + 
Sbjct: 415 VEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASY 474

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A  +F+ ++++G    V T N+++  +   GL  E++ +       GV  D  ++  +
Sbjct: 475 EEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGESGVARDRDSFNGV 534

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            + Y +    E   K    +E+    P++R F   L  + ++
Sbjct: 535 IEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAVLSVYCTA 576



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 130/278 (46%), Gaps = 1/278 (0%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           ++L  F+ M+    CKPN   Y I++    +   +++   +F+E+    +   +++Y  +
Sbjct: 124 RSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKSTEIFEEMPTHGVPRSVFSYTAL 183

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA-FDKMEQVFKSLMHSK 186
           +++YG++G  +    +L RMK  +  P I+T+N +I+S  +    ++ +  +F  + H  
Sbjct: 184 INSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARGGLNWEGLLSLFAEMRHEG 243

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + T+N+++       L  +AE VF+ M      P   TY  ++  +G  + + +  
Sbjct: 244 IQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGKLNKLEKVS 303

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+  E+   G    +S+ N +LEAY   G    A  +F         P++ TY +L   Y
Sbjct: 304 ELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLY 363

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
                 + V++L   M+ +   P+   +   +E F   
Sbjct: 364 GGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEG 401



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 135/326 (41%), Gaps = 49/326 (15%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA----HLHTRDKAKA 65
           D G Y+ LI V G+ G  +  + LF +M      P+   Y  LI A     LH       
Sbjct: 387 DVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHED----- 441

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
            AK +      KG+    P+   Y  ++ A  QA + ++   +F  ++E    P + TYN
Sbjct: 442 -AKKILLHMDEKGI---VPSTKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYN 497

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++ + + G+ KE E+++ +M  +    D  +FN +I+ Y +   F++  + +  L  +
Sbjct: 498 SLINMFARGGLYKESEAIMWKMGESGVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKA 557

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
           + +P   TF +++  Y  A L  ++E  F+++ A    PS + Y  +I +Y   +    A
Sbjct: 558 RFQPDERTFEAVLSVYCTAGLVDESEEQFREIRASGILPSVMCYCMMIAVYARSNRWDDA 617

Query: 246 REI------------------------------------FDELSKLGKDMKVSTLNAMLE 269
            E+                                    FD+L+  G  + +   N +LE
Sbjct: 618 YEVLDEMVTNKVSNIHQVVGKMMKGDYDDYSNWQMVEYVFDKLNSEGCGLGMRFYNTLLE 677

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPD 295
           A    G    A  +   +   G+ P+
Sbjct: 678 ALWWLGQKERAARVLSEAIKRGLFPE 703


>gi|356564951|ref|XP_003550709.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Glycine max]
          Length = 488

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 163/342 (47%), Gaps = 5/342 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q +Y    G   KLI ++GK GQ   A  LF+ M   G  P P +Y AL+ A+    
Sbjct: 116 LREQTFYQPKEGTCMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPELYTALLAAYC--- 172

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  + +A     +MK +  C+P++ TY+ L++ C  A   D V  L++E+ E  + P+
Sbjct: 173 -RSNMIDEAFSVLNEMKKLPLCQPDVFTYSTLIKVCVDAFKFDLVQLLYEEMAERSITPN 231

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             T N V+  YGK GM  +ME VLS M +S  CKPD+ T N +I  +G     D  E+ +
Sbjct: 232 TVTQNIVLGGYGKAGMFDQMEKVLSSMLQSTTCKPDVWTMNTIISVFGNMGQIDMTEKWY 291

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           +   +   +P   TFN +I  YGK R+  K   V + M  +++  +  TY  +I  +   
Sbjct: 292 EKFRYFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADA 351

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            +       FD++   G      TL  ++  Y   GL  +       +  + +  + + Y
Sbjct: 352 GDAKHMECTFDQMRAEGMKADTKTLCCLINGYANAGLFHKVISSVRLAGKLEIPENITFY 411

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
             +  A  KA     ++++ KRM+ +   P+   +   +E +
Sbjct: 412 NAVLSACAKAEDLMEMERVFKRMKDSQCQPDDTTYTIMIEAY 453



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/267 (20%), Positives = 100/267 (37%), Gaps = 4/267 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI V     +  L   L+ EM      P+    N ++  +     KA    + 
Sbjct: 196 DVFTYSTLIKVCVDAFKFDLVQLLYEEMAERSITPNTVTQNIVLGGY----GKAGMFDQM 251

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                 M     CKP++ T N ++        +D     +++     + P+  T+N ++ 
Sbjct: 252 EKVLSSMLQSTTCKPDVWTMNTIISVFGNMGQIDMTEKWYEKFRYFGIEPETRTFNILIG 311

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           AYGK  M  +M SV+  M+  Q      T+N +I+++        ME  F  +     K 
Sbjct: 312 AYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADAGDAKHMECTFDQMRAEGMKA 371

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T   +I  Y  A L  K     +    ++   +   Y  +++     +++     +F
Sbjct: 372 DTKTLCCLINGYANAGLFHKVISSVRLAGKLEIPENITFYNAVLSACAKAEDLMEMERVF 431

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGL 276
             +         +T   M+EAY   G+
Sbjct: 432 KRMKDSQCQPDDTTYTIMIEAYRKEGM 458


>gi|224099036|ref|XP_002311357.1| predicted protein [Populus trichocarpa]
 gi|222851177|gb|EEE88724.1| predicted protein [Populus trichocarpa]
          Length = 369

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 173/344 (50%), Gaps = 9/344 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q +Y      Y KL+ ++G+ GQ + A  +F EM   G  P    Y AL+ A+    
Sbjct: 5   LKEQPFYQPKEATYMKLLVLLGRCGQPQRAHQIFDEMIEEGIEPTSEFYTALLAAYC--- 61

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +   + +      +MK + RC+P++ TY+ LL+AC  A   + ++ L++E+ E +++P+
Sbjct: 62  -RNNLIEEGFSIINQMKTVPRCQPDVYTYSTLLKACVDASRFELIDILYQEMDERLISPN 120

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             T N V+  +GK GM  +ME VLS M +S  CKPD+ T N+++  +G +   D ME+ +
Sbjct: 121 TVTQNIVLSGFGKVGMYDQMERVLSGMLESKTCKPDVWTMNIILSVFGNKGHVDLMERWY 180

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           +   +   +P   TFN +I  YGK R+      V + M  +++  +  TY  +I  +   
Sbjct: 181 EKFRNFGIEPETRTFNILIGAYGKKRMYDNMSSVMEYMRKLQFPWTTSTYNNVIEAFADV 240

Query: 240 DNVSRAREIFDELSKLGKDMKVS--TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
            +       FD++    +DMK    T   ++  Y   GL  +     + +    +  ++S
Sbjct: 241 GDAKNMEYTFDQMR--AEDMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTS 298

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            YK +  A  KA+    ++++ K+M+    +P+ R +   +E +
Sbjct: 299 LYKAVISACAKADDLVEMERVFKQMKDKQCLPDSRTYSIMVEAY 342



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 89/211 (42%), Gaps = 5/211 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D    + +++V G KG   L    + + RN G  P+   +N LI A+   R     ++  
Sbjct: 156 DVWTMNIILSVFGNKGHVDLMERWYEKFRNFGIEPETRTFNILIGAYGKKR-MYDNMSSV 214

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           + Y +K++          TYN ++ A A   +   +   F ++    +  D  T+  +++
Sbjct: 215 MEYMRKLQ----FPWTTSTYNNVIEAFADVGDAKNMEYTFDQMRAEDMKADTKTFCCLIN 270

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y   G+  ++ S +      +   +   +  +I +  K     +ME+VFK +   +  P
Sbjct: 271 GYANAGLFHKVISSVQLAAKFEIPENTSLYKAVISACAKADDLVEMERVFKQMKDKQCLP 330

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
              T++ M+  Y K  +  K  Y+ Q+   M
Sbjct: 331 DSRTYSIMVEAYRKEGMNDKIYYLEQEKQKM 361


>gi|326495232|dbj|BAJ85712.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 527

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 171/342 (50%), Gaps = 5/342 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q +Y    G Y KL+ ++G+ GQ  LA  LF+EM+  GC+P P +Y ALI A+    
Sbjct: 163 LKEQPFYYPKEGTYMKLLLLLGRSGQPSLAQDLFTEMQQQGCQPTPELYTALIGAYC--- 219

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +   L +AL   Q MK    C+P++ TY+IL++A   A   D V+A++KE+ E  +AP+
Sbjct: 220 -RNGLLDEALKLLQDMKANPLCQPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPN 278

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             T N V+  Y + G + +ME +LS M +S   KPD+ T N+++  +G     + ME+ +
Sbjct: 279 TVTQNIVLSGYCRAGRLDDMEKLLSAMLESANSKPDVWTMNIILSLFGNSGQVELMEKWY 338

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           +       +P   TFN +I  YGK R+  K   V + M  + +  +  TY  +I  +   
Sbjct: 339 EKFRGYGIEPETRTFNILIGAYGKKRMYDKMSAVMEYMRRLAFPWTTATYNNVIEAFAEA 398

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            +     + F+++   G      T   ++  +    L  +   + + +  + V P++S +
Sbjct: 399 GDAKNMEDTFNQMRSEGMKPDTKTFCCLINGFSNAALFHKVVGMVKLAERLDVPPNTSFH 458

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
             +  A  KA     ++++ + M+     P+   +   LE +
Sbjct: 459 NSVLAACAKAEDLMEMERVFRHMKHMQCEPDAITYSILLEAY 500



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 142/325 (43%), Gaps = 4/325 (1%)

Query: 22  GKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER 81
           G++G+ R    + +  +    R D   +   +T  L  R  AK    AL  F+ +K    
Sbjct: 111 GRRGRARTP--IKNVQKRLDARADAKAWACTVTEALADRIAAKNWQGALQVFEMLKEQPF 168

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
             P   TY  LL    ++        LF E+ +    P    Y  ++ AY +NG++ E  
Sbjct: 169 YYPKEGTYMKLLLLLGRSGQPSLAQDLFTEMQQQGCQPTPELYTALIGAYCRNGLLDEAL 228

Query: 142 SVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
            +L  MK+N  C+PD+ T+++LI ++     FD ++ ++K +      P   T N ++  
Sbjct: 229 KLLQDMKANPLCQPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSG 288

Query: 201 YGKA-RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
           Y +A RL    + +   + +    P   T   I++++G    V    + +++    G + 
Sbjct: 289 YCRAGRLDDMEKLLSAMLESANSKPDVWTMNIILSLFGNSGQVELMEKWYEKFRGYGIEP 348

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
           +  T N ++ AY    +  +   + E    +     ++TY  + +A+ +A   + ++   
Sbjct: 349 ETRTFNILIGAYGKKRMYDKMSAVMEYMRRLAFPWTTATYNNVIEAFAEAGDAKNMEDTF 408

Query: 320 KRMEQNGIVPNKRFFLEALETFSSS 344
            +M   G+ P+ + F   +  FS++
Sbjct: 409 NQMRSEGMKPDTKTFCCLINGFSNA 433


>gi|357157771|ref|XP_003577908.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 512

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 169/354 (47%), Gaps = 40/354 (11%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q +Y    G Y KL+ ++G+ GQ  LA  LF++M+  GC+P P +Y ALI A+    
Sbjct: 148 LKEQPFYYPKEGTYMKLLLLLGRSGQPALAHRLFADMQQQGCQPTPELYTALIAAYC--- 204

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  L  AL     MK    C+P++ TY+ L++A   A   D V+A++KE+ E  +AP+
Sbjct: 205 -RSGLLDDALRLLGDMKAAPLCQPDVYTYSTLIKALVDASRFDLVDAMYKEMAERGVAPN 263

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             T N V+  YG+ G + +ME +LS M  S   KPD+ T N+++  +G     D ME+ +
Sbjct: 264 TVTQNIVLSGYGRAGRMDDMEKLLSAMLDSTASKPDVWTMNIILSLFGNSGQVDLMEKWY 323

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           +       +P   T N +I  YGK R+  K   V + M  + +  +  TY  +I  +   
Sbjct: 324 EKFRGYGIEPETRTLNILIGAYGKKRMYDKMSAVMEFMRKLAFPWTTSTYNNVIEAFAEA 383

Query: 240 DNVSRAREIFDEL-------------------SKLGKDMKV----------------STL 264
            +     + F+++                   SK G   KV                S  
Sbjct: 384 GDEKNMEQTFNQMRSEGMKPDTKTFCCLINGFSKAGLFHKVVGMVKLAERLDVPANTSFH 443

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
           N++L A    G   E + +F +  ++   PD++TY +L +AY K  M + V  L
Sbjct: 444 NSVLAACARAGDLVEMERVFRHMKHVQCAPDATTYSILVEAYRKEGMTDKVYDL 497



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 135/307 (43%), Gaps = 6/307 (1%)

Query: 42  CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN 101
            R D   +   +T  L  R  AK   +AL  F+ +K      P   TY  LL    ++  
Sbjct: 114 ARSDAKAWAPTVTEALSDRIAAKNWPEALQVFEMLKEQPFYYPKEGTYMKLLLLLGRSGQ 173

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFN 160
               + LF ++ +    P    Y  ++ AY ++G++ +   +L  MK+   C+PD+ T++
Sbjct: 174 PALAHRLFADMQQQGCQPTPELYTALIAAYCRSGLLDDALRLLGDMKAAPLCQPDVYTYS 233

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM--- 217
            LI +      FD ++ ++K +      P   T N ++  YG+A      E +   M   
Sbjct: 234 TLIKALVDASRFDLVDAMYKEMAERGVAPNTVTQNIVLSGYGRAGRMDDMEKLLSAMLDS 293

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
           TA K  P   T   I++++G    V    + +++    G + +  TLN ++ AY    + 
Sbjct: 294 TASK--PDVWTMNIILSLFGNSGQVDLMEKWYEKFRGYGIEPETRTLNILIGAYGKKRMY 351

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEA 337
            +   + E    +     +STY  + +A+ +A  ++ +++   +M   G+ P+ + F   
Sbjct: 352 DKMSAVMEFMRKLAFPWTTSTYNNVIEAFAEAGDEKNMEQTFNQMRSEGMKPDTKTFCCL 411

Query: 338 LETFSSS 344
           +  FS +
Sbjct: 412 INGFSKA 418


>gi|108707772|gb|ABF95567.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
          Length = 443

 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 163/331 (49%), Gaps = 5/331 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q +Y    G + KL+ ++G+ GQ   A +LF EM   GC+P P +Y ALI A+    
Sbjct: 79  LKEQPFYHPKEGTFMKLLLLLGRSGQPSRARYLFDEMLQQGCQPTPELYTALIAAYC--- 135

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +   L  A      MK    C+P++ TY+ +++AC  A   D V+A++K++ +  +AP+
Sbjct: 136 -RNGLLDDAFRLLADMKASPVCQPDVYTYSTIIKACVDASRFDIVDAMYKDMADRSIAPN 194

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             T N V+  YG+ G + +ME VLS M  S   KPD+ T N+++  +G R   + ME+ +
Sbjct: 195 TVTQNIVLSGYGRAGRLDDMEKVLSAMLDSTTSKPDVWTMNIILSLFGNRGQIESMEKWY 254

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           +       +P   T N +I  YGK R+  K   V + M  + +  +  T+  +I  +   
Sbjct: 255 EKFRGYGIEPETRTLNILIGAYGKKRMYDKMSAVMEYMRKLAFPWTTATFNNVIEAFADA 314

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            +       F+++   G      T   ++  +   GL  +   + + +  +GV  D++ +
Sbjct: 315 GDAKNMEHTFNQMRAEGMKPDTKTFCCLINGFGNAGLFHKVVGMVKLAERLGVPMDTTFH 374

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +     KA     ++++  RM+Q   +P+
Sbjct: 375 NAVLMTCVKAEDLMEMERVFMRMKQIQCIPD 405



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/303 (19%), Positives = 133/303 (43%), Gaps = 7/303 (2%)

Query: 44  PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD 103
           P PS   +LI +   T  +     ++   FQ +K      P   T+  LL    ++    
Sbjct: 52  PAPSPRPSLIASTPKTGKR-----RSSQVFQMLKEQPFYHPKEGTFMKLLLLLGRSGQPS 106

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNLL 162
           +   LF E+ +    P    Y  ++ AY +NG++ +   +L+ MK++  C+PD+ T++ +
Sbjct: 107 RARYLFDEMLQQGCQPTPELYTALIAAYCRNGLLDDAFRLLADMKASPVCQPDVYTYSTI 166

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA-RLQGKAEYVFQKMTAMK 221
           I +      FD ++ ++K +      P   T N ++  YG+A RL    + +   + +  
Sbjct: 167 IKACVDASRFDIVDAMYKDMADRSIAPNTVTQNIVLSGYGRAGRLDDMEKVLSAMLDSTT 226

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
             P   T   I++++G    +    + +++    G + +  TLN ++ AY    +  +  
Sbjct: 227 SKPDVWTMNIILSLFGNRGQIESMEKWYEKFRGYGIEPETRTLNILIGAYGKKRMYDKMS 286

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            + E    +     ++T+  + +A+  A   + ++    +M   G+ P+ + F   +  F
Sbjct: 287 AVMEYMRKLAFPWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMKPDTKTFCCLINGF 346

Query: 342 SSS 344
            ++
Sbjct: 347 GNA 349


>gi|115452625|ref|NP_001049913.1| Os03g0309800 [Oryza sativa Japonica Group]
 gi|108707769|gb|ABF95564.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
 gi|108707770|gb|ABF95565.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
 gi|108707771|gb|ABF95566.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
 gi|113548384|dbj|BAF11827.1| Os03g0309800 [Oryza sativa Japonica Group]
 gi|125586018|gb|EAZ26682.1| hypothetical protein OsJ_10586 [Oryza sativa Japonica Group]
 gi|215686360|dbj|BAG87621.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215741099|dbj|BAG97594.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767065|dbj|BAG99293.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767110|dbj|BAG99338.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 501

 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 163/331 (49%), Gaps = 5/331 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q +Y    G + KL+ ++G+ GQ   A +LF EM   GC+P P +Y ALI A+    
Sbjct: 137 LKEQPFYHPKEGTFMKLLLLLGRSGQPSRARYLFDEMLQQGCQPTPELYTALIAAYC--- 193

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +   L  A      MK    C+P++ TY+ +++AC  A   D V+A++K++ +  +AP+
Sbjct: 194 -RNGLLDDAFRLLADMKASPVCQPDVYTYSTIIKACVDASRFDIVDAMYKDMADRSIAPN 252

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             T N V+  YG+ G + +ME VLS M  S   KPD+ T N+++  +G R   + ME+ +
Sbjct: 253 TVTQNIVLSGYGRAGRLDDMEKVLSAMLDSTTSKPDVWTMNIILSLFGNRGQIESMEKWY 312

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           +       +P   T N +I  YGK R+  K   V + M  + +  +  T+  +I  +   
Sbjct: 313 EKFRGYGIEPETRTLNILIGAYGKKRMYDKMSAVMEYMRKLAFPWTTATFNNVIEAFADA 372

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            +       F+++   G      T   ++  +   GL  +   + + +  +GV  D++ +
Sbjct: 373 GDAKNMEHTFNQMRAEGMKPDTKTFCCLINGFGNAGLFHKVVGMVKLAERLGVPMDTTFH 432

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +     KA     ++++  RM+Q   +P+
Sbjct: 433 NAVLMTCVKAEDLMEMERVFMRMKQIQCIPD 463



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/304 (20%), Positives = 134/304 (44%), Gaps = 2/304 (0%)

Query: 43  RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
           R +   +   +T  L  R  AK   +AL  FQ +K      P   T+  LL    ++   
Sbjct: 104 RAEAKAWACTVTEALADRIDAKNWQEALQVFQMLKEQPFYHPKEGTFMKLLLLLGRSGQP 163

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNL 161
            +   LF E+ +    P    Y  ++ AY +NG++ +   +L+ MK++  C+PD+ T++ 
Sbjct: 164 SRARYLFDEMLQQGCQPTPELYTALIAAYCRNGLLDDAFRLLADMKASPVCQPDVYTYST 223

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA-RLQGKAEYVFQKMTAM 220
           +I +      FD ++ ++K +      P   T N ++  YG+A RL    + +   + + 
Sbjct: 224 IIKACVDASRFDIVDAMYKDMADRSIAPNTVTQNIVLSGYGRAGRLDDMEKVLSAMLDST 283

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
              P   T   I++++G    +    + +++    G + +  TLN ++ AY    +  + 
Sbjct: 284 TSKPDVWTMNIILSLFGNRGQIESMEKWYEKFRGYGIEPETRTLNILIGAYGKKRMYDKM 343

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALET 340
             + E    +     ++T+  + +A+  A   + ++    +M   G+ P+ + F   +  
Sbjct: 344 SAVMEYMRKLAFPWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMKPDTKTFCCLING 403

Query: 341 FSSS 344
           F ++
Sbjct: 404 FGNA 407


>gi|9758872|dbj|BAB09426.1| unnamed protein product [Arabidopsis thaliana]
          Length = 495

 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 168/349 (48%), Gaps = 27/349 (7%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q WY  + GIY KLI ++GK  Q   A  LF EM N GC  +  VY AL++A+    
Sbjct: 140 LREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAY---- 195

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL------------ 108
            ++     A    ++MK    C+P++ TY+IL+++  Q    D+V  L            
Sbjct: 196 SRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPN 255

Query: 109 ---FKELHESILA--------PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
              F E+  +++         PD +T N  + A+G NG I+ ME+   + +S+  +P+I 
Sbjct: 256 TITFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIR 315

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           TFN+L+DSYGK   + KM  V + +       T+ T+N +I  +G+A    + EY+F+ M
Sbjct: 316 TFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLM 375

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
            + +  PS +T   ++  YG      +   +   +      + +   N +++AY      
Sbjct: 376 QSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKF 435

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
            E   + E     G  PD  TY+ + KAY  + M   V++L   +E  G
Sbjct: 436 AEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVVESVG 484



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 117/243 (48%), Gaps = 18/243 (7%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHT--RDKAK-------ALAKALGYFQKMKGMERC- 82
           L S+MR  G RP+   +  + +  +     D  K       +  +A G   +++ ME C 
Sbjct: 243 LLSDMRRQGIRPNTITFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCY 302

Query: 83  --------KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
                   +PNI T+NILL +  ++ N  +++A+ + + +   +  I TYN V+DA+G+ 
Sbjct: 303 EKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRA 362

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G +K+ME +   M+S +  P  +T   L+ +YG+    DK+  V + + +S  +  L  F
Sbjct: 363 GDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFF 422

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N ++  YG+     + + V + M    + P  ITY  ++  Y      +  +E+   +  
Sbjct: 423 NCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVVES 482

Query: 255 LGK 257
           +G+
Sbjct: 483 VGE 485



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 5/123 (4%)

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
           Y P+   Y  +I M G C    +A E+F E+   G  +      A++ AY  +G    A 
Sbjct: 146 YKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAF 205

Query: 282 LLFE---NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
            L E   +SHN    PD  TY +L K++ +    + VQ LL  M + GI PN   F+E  
Sbjct: 206 TLLERMKSSHN--CQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITFVEME 263

Query: 339 ETF 341
            T 
Sbjct: 264 STL 266


>gi|297792071|ref|XP_002863920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309755|gb|EFH40179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 498

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 166/341 (48%), Gaps = 27/341 (7%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q WY  + GIY KLI ++GK  Q   A  LF EM N GC  +  VY AL++A+    
Sbjct: 143 LREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALLSAY---- 198

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL------------ 108
            ++     A    ++MK    C+P++ TY+IL+++  Q    D+V+ L            
Sbjct: 199 SRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVHDLLSDMRRLGIRPN 258

Query: 109 ---FKELHESILA--------PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
              F E+  +++         PD +T N  + A+G NG I+ ME+   + +S+  +P+I 
Sbjct: 259 TITFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIR 318

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           TFN+L+DSYGK   + KM  V + +       T+ T+N +I  +G+A    + EY+F+ M
Sbjct: 319 TFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLM 378

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
            + +  PS +T   ++  YG      +   +   +      + +   N +++AY      
Sbjct: 379 QSERIIPSCVTLCSLVRAYGRAGKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKF 438

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
            E   + E     G  PD  TY+ + KAY  + M   V++L
Sbjct: 439 AEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKEL 479



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 5/123 (4%)

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
           Y P+   Y  +I M G C    +A E+F E+   G  +      A+L AY  +G    A 
Sbjct: 149 YKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALLSAYSRSGRFDAAF 208

Query: 282 LLFE---NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
            L E   +SHN    PD  TY +L K++ +    + V  LL  M + GI PN   F+E  
Sbjct: 209 TLLERMKSSHN--CQPDVHTYSILIKSFLQVFAFDKVHDLLSDMRRLGIRPNTITFVEME 266

Query: 339 ETF 341
            T 
Sbjct: 267 STL 269


>gi|357479161|ref|XP_003609866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510921|gb|AES92063.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 496

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 143/277 (51%), Gaps = 5/277 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q +Y    G Y KLI ++GK GQ + A  LF+ M   GC P P +Y AL+ A+    
Sbjct: 128 LREQSFYQPREGTYMKLIVLLGKSGQPQRAHQLFTAMIEEGCDPTPELYTALLAAYC--- 184

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  + +AL    +MK    C+P++ TY+ L++AC      + +  L++E+ +  + P+
Sbjct: 185 -RSNMIDEALSILDEMKNHPLCQPDVFTYSTLIKACVDIFKFELIELLYEEMAQRSIMPN 243

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             T N V++ YGK GM  +ME VLS M +S  CKPD+ T N +I  +G     D ME+ +
Sbjct: 244 TVTQNIVLNGYGKAGMFDQMEKVLSGMLQSADCKPDVWTMNTIIGVFGNMGQIDMMEKWY 303

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           +   +   +P   TFN +I +YGK R+  K   V + M  +++  +  TY  +I  +   
Sbjct: 304 EKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFAEA 363

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
            +       F+++   G      T   +++ +   GL
Sbjct: 364 GDAKNMEYTFNQMRSEGMRADTKTFCCLIKGFANAGL 400



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/297 (20%), Positives = 130/297 (43%), Gaps = 3/297 (1%)

Query: 50  NALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALF 109
           N +  A     DK + L +AL     ++     +P   TY  L+    ++    + + LF
Sbjct: 103 NTVTEALSECIDKKQWL-QALETLDMLREQSFYQPREGTYMKLIVLLGKSGQPQRAHQLF 161

Query: 110 KELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGK 168
             + E    P    Y  ++ AY ++ MI E  S+L  MK++  C+PD+ T++ LI +   
Sbjct: 162 TAMIEEGCDPTPELYTALLAAYCRSNMIDEALSILDEMKNHPLCQPDVFTYSTLIKACVD 221

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM-TAMKYTPSFI 227
              F+ +E +++ +      P   T N ++  YGKA +  + E V   M  +    P   
Sbjct: 222 IFKFELIELLYEEMAQRSIMPNTVTQNIVLNGYGKAGMFDQMEKVLSGMLQSADCKPDVW 281

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           T   II ++G    +    + +++    G + +  T N ++ +Y    +  +   + E  
Sbjct: 282 TMNTIIGVFGNMGQIDMMEKWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYM 341

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             +     +STY  + +A+ +A   + ++    +M   G+  + + F   ++ F+++
Sbjct: 342 RKLQFPWTTSTYNNVIEAFAEAGDAKNMEYTFNQMRSEGMRADTKTFCCLIKGFANA 398



 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 84/192 (43%), Gaps = 4/192 (2%)

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           IK ++  L R  + +   + +T   L +   K+Q    +E +      S  +P   T+  
Sbjct: 85  IKNVKKKLDRKNNAKAWANTVT-EALSECIDKKQWLQALETLDMLREQSFYQPREGTYMK 143

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           +I+  GK+    +A  +F  M      P+   Y  ++  Y   + +  A  I DE+    
Sbjct: 144 LIVLLGKSGQPQRAHQLFTAMIEEGCDPTPELYTALLAAYCRSNMIDEALSILDEMKNHP 203

Query: 257 K-DMKVSTLNAMLEAYCMNGLPTE-ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
                V T + +++A C++    E  +LL+E      + P++ T  ++   Y KA M + 
Sbjct: 204 LCQPDVFTYSTLIKA-CVDIFKFELIELLYEEMAQRSIMPNTVTQNIVLNGYGKAGMFDQ 262

Query: 315 VQKLLKRMEQNG 326
           ++K+L  M Q+ 
Sbjct: 263 MEKVLSGMLQSA 274


>gi|115450301|ref|NP_001048751.1| Os03g0115300 [Oryza sativa Japonica Group]
 gi|113547222|dbj|BAF10665.1| Os03g0115300 [Oryza sativa Japonica Group]
          Length = 442

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 174/344 (50%), Gaps = 6/344 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           ++KQ+WY   +  Y++L+ ++GK  Q   A  LF  M +   +P   VY AL+ A+ ++ 
Sbjct: 79  LRKQQWYKPRSQTYARLLMMLGKCQQPGAATALFKVMLSERLKPTVDVYTALVGAYGYS- 137

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
                L +AL   ++MKG+  CKP+  T+++L+  C++ R  D++ A+  E+    L  +
Sbjct: 138 ---GLLDQALATVEQMKGVADCKPDEYTFSVLINCCSKLRRFDRIPAILDEMSYLGLQCN 194

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKR-QAFDKMEQV 178
              +N ++D YGK GM++EME+ L+ M +     PDI T N +I +YG       +ME+ 
Sbjct: 195 AVIHNAIIDGYGKAGMLEEMENALTSMLEDGDSVPDIYTMNSIIWAYGNHGNRIHEMERW 254

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           +        +P   TFN MI +YG A++  K   V + M    ++P+ +T+  II  +G 
Sbjct: 255 YSEFQLMGVEPDTQTFNIMIKSYGNAKMHDKMMSVLKYMKKHFFSPTVVTFNIIIESFGR 314

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             N+ +    F  +   G      T  +++  Y   G   +   +   + N  V  D+  
Sbjct: 315 AGNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGFLDKVPGIIRQTENTDVVLDTPF 374

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           +  +  AY K+   ++++++L+ M++    P+K  +   ++ ++
Sbjct: 375 FNCVIDAYAKSGDIKIMEEMLQLMKEKKCKPDKVTYTTMIQAYN 418



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 133/332 (40%), Gaps = 43/332 (12%)

Query: 55  AHLHTRDKAKALAK---ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE 111
           A L   D A A  +   AL  F+ ++  +  KP   TY  LL    + +      ALFK 
Sbjct: 55  AVLEALDSAVASCRWEPALEIFELLRKQQWYKPRSQTYARLLMMLGKCQQPGAATALFKV 114

Query: 112 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITF----------- 159
           +    L P +  Y  ++ AYG +G++ +  + + +MK    CKPD  TF           
Sbjct: 115 MLSERLKPTVDVYTALVGAYGYSGLLDQALATVEQMKGVADCKPDEYTFSVLINCCSKLR 174

Query: 160 ------------------------NLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTF 194
                                   N +ID YGK    ++ME    S++   +  P + T 
Sbjct: 175 RFDRIPAILDEMSYLGLQCNAVIHNAIIDGYGKAGMLEEMENALTSMLEDGDSVPDIYTM 234

Query: 195 NSMIINYGKA--RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           NS+I  YG    R+  + E  + +   M   P   T+  +I  YG      +   +   +
Sbjct: 235 NSIIWAYGNHGNRIH-EMERWYSEFQLMGVEPDTQTFNIMIKSYGNAKMHDKMMSVLKYM 293

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            K      V T N ++E++   G   + +  F      GV P+  TY  L   Y+KA   
Sbjct: 294 KKHFFSPTVVTFNIIIESFGRAGNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGFL 353

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           + V  ++++ E   +V +  FF   ++ ++ S
Sbjct: 354 DKVPGIIRQTENTDVVLDTPFFNCVIDAYAKS 385


>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 863

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 168/345 (48%), Gaps = 6/345 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ+Q W   +  IY+ +I+++G++G     + +F EM + G       Y ALI A+    
Sbjct: 131 MQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAY---- 186

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAP 119
            +      +L    +MK  ++  P+I+TYN ++ ACA+   + + +  LF E+    + P
Sbjct: 187 GRNGRYETSLELLDRMKN-DKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQP 245

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           DI TYN ++ A    G+  E E V   M      PD+ T++ L++++GK +  +K+  + 
Sbjct: 246 DIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLL 305

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             +      P + ++N ++  Y K+    +A  VF +M A   TP+  TY  ++ ++G  
Sbjct: 306 SEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQS 365

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
                 R++F E+     D   +T N ++E +   G   E   LF +     + PD  TY
Sbjct: 366 GRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETY 425

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           + +  A  K  + E  +K+L+ M  N IVP+ + +   +E F  +
Sbjct: 426 EGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQA 470



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 148/323 (45%), Gaps = 5/323 (1%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   YS L+   GK  +      L SEM + G  PD + YN L+ A+     K+ ++ 
Sbjct: 279 VPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYA----KSGSIK 334

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A+G F +M+    C PN  TY++LL    Q+   D V  LF E+  S   PD  TYN +
Sbjct: 335 EAMGVFHQMQAA-GCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNIL 393

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++ +G+ G  KE+ ++   M     +PD+ T+  +I + GK    +   ++ + +  +  
Sbjct: 394 IEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDI 453

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P+   +  +I  +G+A L  +A   F  M  +   PS  TY  ++  +     V  +  
Sbjct: 454 VPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLVKESEA 513

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           I   L   G      T NA +EAY   G   EA   + +       PD  T + +   Y+
Sbjct: 514 ILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYS 573

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
            A + +  ++  + M+ + I+P+
Sbjct: 574 FARLVDECREQFEEMKASDILPS 596



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 156/333 (46%), Gaps = 5/333 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L++    +G    A  +F  M + G  PD + Y+ L+     T  K + L K 
Sbjct: 246 DIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLV----ETFGKLRRLEKV 301

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                +M       P+I +YN+LL A A++ ++ +   +F ++  +   P+  TY+ +++
Sbjct: 302 SDLLSEMASGGSL-PDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLN 360

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +G++G   ++  +   MKS+   PD  T+N+LI+ +G+   F ++  +F  ++    +P
Sbjct: 361 LFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEP 420

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+  +I   GK  L   A  + Q MTA    PS   Y  +I  +G       A   F
Sbjct: 421 DMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAF 480

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           + + ++G +  + T +++L ++   GL  E++ +     + G+  +  T+    +AY + 
Sbjct: 481 NTMHEVGSNPSIETYHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQG 540

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
              E   K    ME++   P++R     L  +S
Sbjct: 541 GKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYS 573



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 139/275 (50%), Gaps = 1/275 (0%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           ++L  F+ M+    CKPN   Y I++    +   +D+   +F E+    ++  +++Y  +
Sbjct: 123 RSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTAL 182

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ-AFDKMEQVFKSLMHSK 186
           ++AYG+NG  +    +L RMK+++  P I+T+N +I++  +    ++ +  +F  + H  
Sbjct: 183 INAYGRNGRYETSLELLDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEG 242

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + T+N+++       L  +AE VF+ M      P   TY  ++  +G    + +  
Sbjct: 243 IQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVS 302

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           ++  E++  G    +++ N +LEAY  +G   EA  +F      G TP+++TY +L   +
Sbjct: 303 DLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLF 362

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            ++   + V++L   M+ +   P+   +   +E F
Sbjct: 363 GQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVF 397



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 143/322 (44%), Gaps = 9/322 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKA 65
           + D   Y+ L+    K G  + AM +F +M+ +GC P+ + Y+ L+     +   D  + 
Sbjct: 314 LPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQ 373

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L      F +MK      P+  TYNIL+    +     +V  LF ++ E  + PD+ TY 
Sbjct: 374 L------FLEMKS-SNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYE 426

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
           G++ A GK G+ ++   +L  M +N   P    +  +I+++G+   +++    F ++   
Sbjct: 427 GIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEV 486

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P++ T++S++ ++ +  L  ++E +  ++       +  T+   I  Y        A
Sbjct: 487 GSNPSIETYHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEA 546

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            + + ++ K   D    TL A+L  Y    L  E    FE      + P    Y ++   
Sbjct: 547 VKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAV 606

Query: 306 YTKANMKELVQKLLKRMEQNGI 327
           Y K    + V +LL+ M  N +
Sbjct: 607 YGKTERWDDVNELLEEMLSNRV 628



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 131/322 (40%), Gaps = 41/322 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI V G+ G  +  + LF +M      PD   Y  +I A      K      A
Sbjct: 386 DAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFAC----GKGGLHEDA 441

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               Q M   +   P+   Y  ++ A  QA   ++    F  +HE    P I TY+ ++ 
Sbjct: 442 RKILQYMTAND-IVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLLY 500

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           ++ + G++KE E++LSR+  +    +  TFN  I++Y +   F++  + +  +  S+  P
Sbjct: 501 SFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDP 560

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG---YCDNVSRAR 246
              T  +++  Y  ARL  +    F++M A    PS + Y  ++ +YG     D+V+   
Sbjct: 561 DERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELL 620

Query: 247 E---------------------------------IFDELSKLGKDMKVSTLNAMLEAYCM 273
           E                                 + D+L+  G  + +   NA+L+A   
Sbjct: 621 EEMLSNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWW 680

Query: 274 NGLPTEADLLFENSHNMGVTPD 295
            G    A  +   +   G+ P+
Sbjct: 681 LGQKERAARVLNEATKRGLFPE 702


>gi|27476102|gb|AAO17033.1| Hypothetical protein [Oryza sativa Japonica Group]
 gi|108705848|gb|ABF93643.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584686|gb|EAZ25350.1| hypothetical protein OsJ_09164 [Oryza sativa Japonica Group]
          Length = 450

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 174/344 (50%), Gaps = 6/344 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           ++KQ+WY   +  Y++L+ ++GK  Q   A  LF  M +   +P   VY AL+ A+ ++ 
Sbjct: 79  LRKQQWYKPRSQTYARLLMMLGKCQQPGAATALFKVMLSERLKPTVDVYTALVGAYGYS- 137

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
                L +AL   ++MKG+  CKP+  T+++L+  C++ R  D++ A+  E+    L  +
Sbjct: 138 ---GLLDQALATVEQMKGVADCKPDEYTFSVLINCCSKLRRFDRIPAILDEMSYLGLQCN 194

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKR-QAFDKMEQV 178
              +N ++D YGK GM++EME+ L+ M +     PDI T N +I +YG       +ME+ 
Sbjct: 195 AVIHNAIIDGYGKAGMLEEMENALTSMLEDGDSVPDIYTMNSIIWAYGNHGNRIHEMERW 254

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           +        +P   TFN MI +YG A++  K   V + M    ++P+ +T+  II  +G 
Sbjct: 255 YSEFQLMGVEPDTQTFNIMIKSYGNAKMHDKMMSVLKYMKKHFFSPTVVTFNIIIESFGR 314

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             N+ +    F  +   G      T  +++  Y   G   +   +   + N  V  D+  
Sbjct: 315 AGNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGFLDKVPGIIRQTENTDVVLDTPF 374

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           +  +  AY K+   ++++++L+ M++    P+K  +   ++ ++
Sbjct: 375 FNCVIDAYAKSGDIKIMEEMLQLMKEKKCKPDKVTYTTMIQAYN 418



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 133/332 (40%), Gaps = 43/332 (12%)

Query: 55  AHLHTRDKAKALAK---ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE 111
           A L   D A A  +   AL  F+ ++  +  KP   TY  LL    + +      ALFK 
Sbjct: 55  AVLEALDSAVASCRWEPALEIFELLRKQQWYKPRSQTYARLLMMLGKCQQPGAATALFKV 114

Query: 112 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITF----------- 159
           +    L P +  Y  ++ AYG +G++ +  + + +MK    CKPD  TF           
Sbjct: 115 MLSERLKPTVDVYTALVGAYGYSGLLDQALATVEQMKGVADCKPDEYTFSVLINCCSKLR 174

Query: 160 ------------------------NLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTF 194
                                   N +ID YGK    ++ME    S++   +  P + T 
Sbjct: 175 RFDRIPAILDEMSYLGLQCNAVIHNAIIDGYGKAGMLEEMENALTSMLEDGDSVPDIYTM 234

Query: 195 NSMIINYGKA--RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           NS+I  YG    R+  + E  + +   M   P   T+  +I  YG      +   +   +
Sbjct: 235 NSIIWAYGNHGNRIH-EMERWYSEFQLMGVEPDTQTFNIMIKSYGNAKMHDKMMSVLKYM 293

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            K      V T N ++E++   G   + +  F      GV P+  TY  L   Y+KA   
Sbjct: 294 KKHFFSPTVVTFNIIIESFGRAGNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGFL 353

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           + V  ++++ E   +V +  FF   ++ ++ S
Sbjct: 354 DKVPGIIRQTENTDVVLDTPFFNCVIDAYAKS 385


>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
 gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74850, chloroplastic; AltName: Full=Protein PLASTID
           TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
 gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
 gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
 gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
          Length = 862

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 168/345 (48%), Gaps = 6/345 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ+Q W   +  IY+ +I+++G++G     + +F EM + G       Y ALI A+    
Sbjct: 131 MQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAY---- 186

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAP 119
            +      +L    +MK  E+  P+I+TYN ++ ACA+   + + +  LF E+    + P
Sbjct: 187 GRNGRYETSLELLDRMKN-EKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQP 245

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           DI TYN ++ A    G+  E E V   M      PD+ T++ L++++GK +  +K+  + 
Sbjct: 246 DIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLL 305

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             +      P + ++N ++  Y K+    +A  VF +M A   TP+  TY  ++ ++G  
Sbjct: 306 GEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQS 365

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
                 R++F E+     D   +T N ++E +   G   E   LF +     + PD  TY
Sbjct: 366 GRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETY 425

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           + +  A  K  + E  +K+L+ M  N IVP+ + +   +E F  +
Sbjct: 426 EGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQA 470



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 156/333 (46%), Gaps = 5/333 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L++    +G    A  +F  M + G  PD + Y+ L+     T  K + L K 
Sbjct: 246 DIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLV----ETFGKLRRLEKV 301

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                +M       P+I +YN+LL A A++ ++ +   +F ++  +   P+  TY+ +++
Sbjct: 302 CDLLGEMASGGSL-PDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLN 360

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +G++G   ++  +   MKS+   PD  T+N+LI+ +G+   F ++  +F  ++    +P
Sbjct: 361 LFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEP 420

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+  +I   GK  L   A  + Q MTA    PS   Y  +I  +G       A   F
Sbjct: 421 DMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAF 480

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           + + ++G +  + T +++L ++   GL  E++ +     + G+  +  T+    +AY + 
Sbjct: 481 NTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQG 540

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
              E   K    ME++   P++R     L  +S
Sbjct: 541 GKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYS 573



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 147/323 (45%), Gaps = 5/323 (1%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   YS L+   GK  +      L  EM + G  PD + YN L+ A+     K+ ++ 
Sbjct: 279 VPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYA----KSGSIK 334

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A+G F +M+    C PN  TY++LL    Q+   D V  LF E+  S   PD  TYN +
Sbjct: 335 EAMGVFHQMQAA-GCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNIL 393

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++ +G+ G  KE+ ++   M     +PD+ T+  +I + GK    +   ++ + +  +  
Sbjct: 394 IEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDI 453

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P+   +  +I  +G+A L  +A   F  M  +   PS  T+  ++  +     V  +  
Sbjct: 454 VPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEA 513

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           I   L   G      T NA +EAY   G   EA   + +       PD  T + +   Y+
Sbjct: 514 ILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYS 573

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
            A + +  ++  + M+ + I+P+
Sbjct: 574 FARLVDECREQFEEMKASDILPS 596



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 138/275 (50%), Gaps = 1/275 (0%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           ++L  F+ M+    CKPN   Y I++    +   +D+   +F E+    ++  +++Y  +
Sbjct: 123 RSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTAL 182

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ-AFDKMEQVFKSLMHSK 186
           ++AYG+NG  +    +L RMK+ +  P I+T+N +I++  +    ++ +  +F  + H  
Sbjct: 183 INAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEG 242

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + T+N+++       L  +AE VF+ M      P   TY  ++  +G    + +  
Sbjct: 243 IQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVC 302

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           ++  E++  G    +++ N +LEAY  +G   EA  +F      G TP+++TY +L   +
Sbjct: 303 DLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLF 362

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            ++   + V++L   M+ +   P+   +   +E F
Sbjct: 363 GQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVF 397



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 143/322 (44%), Gaps = 9/322 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKA 65
           + D   Y+ L+    K G  + AM +F +M+ +GC P+ + Y+ L+     +   D  + 
Sbjct: 314 LPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQ 373

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L      F +MK      P+  TYNIL+    +     +V  LF ++ E  + PD+ TY 
Sbjct: 374 L------FLEMKS-SNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYE 426

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
           G++ A GK G+ ++   +L  M +N   P    +  +I+++G+   +++    F ++   
Sbjct: 427 GIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEV 486

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P++ TF+S++ ++ +  L  ++E +  ++       +  T+   I  Y        A
Sbjct: 487 GSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEA 546

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            + + ++ K   D    TL A+L  Y    L  E    FE      + P    Y ++   
Sbjct: 547 VKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAV 606

Query: 306 YTKANMKELVQKLLKRMEQNGI 327
           Y K    + V +LL+ M  N +
Sbjct: 607 YGKTERWDDVNELLEEMLSNRV 628



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 131/322 (40%), Gaps = 41/322 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI V G+ G  +  + LF +M      PD   Y  +I A      K      A
Sbjct: 386 DAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFAC----GKGGLHEDA 441

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               Q M   +   P+   Y  ++ A  QA   ++    F  +HE    P I T++ ++ 
Sbjct: 442 RKILQYMTAND-IVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLY 500

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           ++ + G++KE E++LSR+  +    +  TFN  I++Y +   F++  + +  +  S+  P
Sbjct: 501 SFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDP 560

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG---YCDNVSRAR 246
              T  +++  Y  ARL  +    F++M A    PS + Y  ++ +YG     D+V+   
Sbjct: 561 DERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELL 620

Query: 247 E---------------------------------IFDELSKLGKDMKVSTLNAMLEAYCM 273
           E                                 + D+L+  G  + +   NA+L+A   
Sbjct: 621 EEMLSNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWW 680

Query: 274 NGLPTEADLLFENSHNMGVTPD 295
            G    A  +   +   G+ P+
Sbjct: 681 LGQKERAARVLNEATKRGLFPE 702


>gi|125542133|gb|EAY88272.1| hypothetical protein OsI_09727 [Oryza sativa Indica Group]
          Length = 450

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 174/344 (50%), Gaps = 6/344 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           ++KQ+WY   +  Y++L+ ++GK  Q   A  LF  M +   +P   VY AL+ A+ ++ 
Sbjct: 79  LRKQQWYKPRSQTYARLLMMLGKCRQPGAATALFKVMLSERLKPTVDVYTALVGAYGYS- 137

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
                L +AL   ++MKG+  CKP+  T+++L+  C++ R  D++ A+  E+    L  +
Sbjct: 138 ---GLLDEALATVEQMKGVADCKPDEYTFSVLINCCSKLRRFDRIPAILDEMSYLGLQCN 194

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKR-QAFDKMEQV 178
              +N ++D YGK GM++EME+ L+ M +     PDI T N +I +YG       +ME+ 
Sbjct: 195 AVIHNAIIDGYGKAGMLEEMENALTSMLEDGDSVPDIYTMNSIIWAYGNHGNRIHEMERW 254

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           +        +P   TFN MI +YG A++  K   V + M    ++P+ +T+  II  +G 
Sbjct: 255 YSEFQLMGVEPDTQTFNIMIKSYGNAKMHDKMMSVLKYMKKHFFSPTVVTFNIIIESFGR 314

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             N+ +    F  +   G      T  +++  Y   G   +   +   + N  V  D+  
Sbjct: 315 AGNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGFLDKVPGIIRQTENTDVVLDTPF 374

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           +  +  AY K+   ++++++L+ M++    P+K  +   ++ ++
Sbjct: 375 FNCVIDAYAKSGDIKIMEEMLQLMKEKKCKPDKVTYTTMIQAYN 418



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 133/332 (40%), Gaps = 43/332 (12%)

Query: 55  AHLHTRDKAKALAK---ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE 111
           A L   D A A  +   AL  F+ ++  +  KP   TY  LL    + R      ALFK 
Sbjct: 55  AVLEALDSAVASCRWESALEIFELLRKQQWYKPRSQTYARLLMMLGKCRQPGAATALFKV 114

Query: 112 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITF----------- 159
           +    L P +  Y  ++ AYG +G++ E  + + +MK    CKPD  TF           
Sbjct: 115 MLSERLKPTVDVYTALVGAYGYSGLLDEALATVEQMKGVADCKPDEYTFSVLINCCSKLR 174

Query: 160 ------------------------NLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTF 194
                                   N +ID YGK    ++ME    S++   +  P + T 
Sbjct: 175 RFDRIPAILDEMSYLGLQCNAVIHNAIIDGYGKAGMLEEMENALTSMLEDGDSVPDIYTM 234

Query: 195 NSMIINYGKA--RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           NS+I  YG    R+  + E  + +   M   P   T+  +I  YG      +   +   +
Sbjct: 235 NSIIWAYGNHGNRIH-EMERWYSEFQLMGVEPDTQTFNIMIKSYGNAKMHDKMMSVLKYM 293

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            K      V T N ++E++   G   + +  F      GV P+  TY  L   Y+KA   
Sbjct: 294 KKHFFSPTVVTFNIIIESFGRAGNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGFL 353

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           + V  ++++ E   +V +  FF   ++ ++ S
Sbjct: 354 DKVPGIIRQTENTDVVLDTPFFNCVIDAYAKS 385


>gi|218191848|gb|EEC74275.1| hypothetical protein OsI_09511 [Oryza sativa Indica Group]
          Length = 933

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 166/363 (45%), Gaps = 40/363 (11%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R  + D  +Y+  I  +   G+ + A  + +EMRN G +PD S YN +I +H    + A
Sbjct: 547 DRNMLPDAVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETA 606

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNIL------------------------------- 92
           KAL        +MK M   KPN++TYN L                               
Sbjct: 607 KALK----LLHEMK-MSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLT 661

Query: 93  ----LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
               L+AC+Q+R +D +  + + +  + L  DI  YN ++     +GM ++   VL  M 
Sbjct: 662 HRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEML 721

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
            +   PD ITFN LI  + K    D     +  ++H    P + TFN+++         G
Sbjct: 722 GSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIG 781

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           +A  V  +M      P+ +TY+ ++T +G   N   A  ++ E+   G   KVST NA++
Sbjct: 782 EAGTVLIEMEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALI 841

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             +   G+ T+A  LF++    GV P S TY +L   +++      V+K LK M++ G  
Sbjct: 842 SDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFS 901

Query: 329 PNK 331
           P+K
Sbjct: 902 PSK 904



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 157/351 (44%), Gaps = 14/351 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M K+R    +   Y  LI    K      A+ ++ +M   G   +  + ++L+      R
Sbjct: 439 MMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVEVNKFIVDSLVNG---LR 495

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
              K + +A+  F+   G      + V Y  L+    +A ++       +EL +  + PD
Sbjct: 496 QNGK-IEEAMALFKDASG-SGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPD 553

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
              YN  ++     G  KE +S+L+ M++   KPD  T+N +I S+ ++    K  ++  
Sbjct: 554 AVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLH 613

Query: 181 SLMHSKEKPTLPTFNSMIIN-YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
            +  S  KP L T+N+++   +G   ++ KA+Y+  +M +  ++PS +T+  ++      
Sbjct: 614 EMKMSSIKPNLITYNTLVAGLFGTGAVE-KAKYLLNEMVSAGFSPSSLTHRRVLQACSQS 672

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             +    +I + +   G    ++  N +L+  C +G+  +A ++ E     G+ PD+ T+
Sbjct: 673 RRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITF 732

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
             L   + K++  +       +M    I PN       + TF++ L G +S
Sbjct: 733 NALILGHCKSSHLDNAFATYAQMLHQNISPN-------IATFNTLLGGLES 776



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 124/253 (49%), Gaps = 11/253 (4%)

Query: 37  MRNSGCRPDPSVYNALITA---HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 93
           M N+G   D +VYN L+     H  TR     L + LG            P+ +T+N L+
Sbjct: 685 MMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLG--------SGIAPDTITFNALI 736

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
               ++ ++D   A + ++    ++P+I T+N ++      G I E  +VL  M+ +  +
Sbjct: 737 LGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLE 796

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P+ +T+++L+  +GK+    +  +++  ++     P + T+N++I ++ KA +  +A+ +
Sbjct: 797 PNNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKEL 856

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F+ M      P+  TY+ +++ +    N +  ++   ++ + G      TL+ +  A+  
Sbjct: 857 FKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSK 916

Query: 274 NGLPTEADLLFEN 286
            G+  +A  L +N
Sbjct: 917 PGMTWQAQRLLKN 929



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 143/348 (41%), Gaps = 32/348 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL------- 66
           Y+ L+A   + GQ   A  +   M+ +G  P+ + Y   I  +  T+   +A        
Sbjct: 207 YNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMV 266

Query: 67  ------------------------AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
                                   ++A   F++M  +    PN VTY  L+ + A+A   
Sbjct: 267 RNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAV-PNHVTYCTLIDSLAKAGRG 325

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
            ++ +L  E+    +  D+ TY  +MD  GK G   E++  L    S+    + +T+ +L
Sbjct: 326 KELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSLNGVTYTVL 385

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           ID+  K    D+ EQV   +      P + TF+S+I  + K  L  KA    + M     
Sbjct: 386 IDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGI 445

Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
            P+ +TY  +I  +        A E++ ++   G ++    +++++     NG   EA  
Sbjct: 446 NPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVEVNKFIVDSLVNGLRQNGKIEEAMA 505

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           LF+++   G++ D   Y  L     KA       K  + +    ++P+
Sbjct: 506 LFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPD 553



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 117/287 (40%), Gaps = 15/287 (5%)

Query: 43  RP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN 101
           RP DP+  NAL+ +H   R    A+A           +   +P  V YNILL A +   +
Sbjct: 69  RPADPASLNALLYSHCRLRLLRPAIAL----------LRSSRPTTVAYNILLAALSDHAH 118

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
                A+  E+ +  +  D  T N ++    +NG +    ++  R        D+I +N 
Sbjct: 119 AP---AVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALADRGGGIHAL-DVIGWNT 174

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           LI  Y +         V   +        +  +N+++  + +A     A  V   M    
Sbjct: 175 LIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAG 234

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
             P+  TY   I  Y     V  A ++++ + + G  + V TL+A++   C +G  +EA 
Sbjct: 235 VDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAY 294

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
            LF     +G  P+  TY  L  +  KA   + +  LL  M   G+V
Sbjct: 295 ALFREMDKVGAVPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVV 341



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/338 (19%), Positives = 135/338 (39%), Gaps = 24/338 (7%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALG 71
           Y+ L+A +        A  + +EM   G   D    N L+         D A ALA   G
Sbjct: 106 YNILLAALSDHAH---APAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALADRGG 162

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
               +        +++ +N L+    +  +     ++   +    L  D+  YN ++  +
Sbjct: 163 GIHAL--------DVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGF 214

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G +     VL  MK     P++ T+   I  Y + +  ++   +++ ++ +     +
Sbjct: 215 CRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDV 274

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T ++++    +     +A  +F++M  +   P+ +TY  +I              +  E
Sbjct: 275 VTLSALVAGLCRDGRFSEAYALFREMDKVGAVPNHVTYCTLIDSLAKAGRGKELLSLLGE 334

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEA--DLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +   G  M + T  A+++     G   E    L F  S N+ +  +  TY +L  A  KA
Sbjct: 335 MVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSL--NGVTYTVLIDALCKA 392

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
           +  +  +++L  ME+  I PN       + TFSS + G
Sbjct: 393 HNVDEAEQVLLEMEEKSISPN-------VVTFSSVING 423


>gi|449441652|ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Cucumis sativus]
 gi|449522692|ref|XP_004168360.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Cucumis sativus]
          Length = 496

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 166/366 (45%), Gaps = 42/366 (11%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q +Y    G Y KL+ ++G+ GQ   A  LF  M    C P P +Y AL+ A+    
Sbjct: 132 LREQPFYEPKEGTYMKLLVLLGRSGQPHRARLLFDTMVQERCEPTPELYTALLAAYC--- 188

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +   +  A      MK + RC+P++ TY+IL++AC      + V +L++E+ E ++ P+
Sbjct: 189 -RNNLIDDAFSTLNLMKTLPRCQPDVYTYSILIKACVDDSRFEIVESLYEEMAERLITPN 247

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             T N V+  YGK G   +ME VL  M +S  C+PD+ T N+++  +G +   + ME+ +
Sbjct: 248 TVTQNIVLSGYGKIGKYDQMEKVLIGMLESTTCRPDVWTMNIILSVFGNKGHIEMMERWY 307

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           +   +   +P   TFN +I  YGK R+  K   V + M  +++  +  TY  +I  +   
Sbjct: 308 EKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADV 367

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL----------------PT----- 278
            +       F+++   G      T   ++  Y   GL                P      
Sbjct: 368 GDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVIGSVKLAGKLEIPENTSFY 427

Query: 279 --------------EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
                         E D +F+   +    PD+ TY ++ +AY K  M + V  L   +E+
Sbjct: 428 NAVISACAKAEDLMEMDRVFKRMKDKHCQPDNKTYSIMMEAYGKEGMNDRVHYL--ELEK 485

Query: 325 NGIVPN 330
             ++ N
Sbjct: 486 KQVIDN 491


>gi|225432159|ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic [Vitis vinifera]
          Length = 498

 Score =  150 bits (379), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 165/365 (45%), Gaps = 43/365 (11%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q +Y    G Y KL+ ++GK GQ   A  LF  M   GC P   +Y AL+ ++    
Sbjct: 134 LREQPFYQPKEGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTELYTALLASYC--- 190

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  + +A     +MK + RC+P++ TY+ LL+AC  A   + V +L++E+    + P+
Sbjct: 191 -RSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASRFELVESLYEEMDVRSITPN 249

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             T N V+  YGK G   EME VLS M +S   KPD+ T N ++  +G +   + ME+ +
Sbjct: 250 TVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKWY 309

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           +   +   +P   TFN +I  YGK R+  K   V + M  +++  +  TY  +I  +   
Sbjct: 310 EKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFSDV 369

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL----------------P------ 277
            +       FD++   G      T   ++  Y   GL                P      
Sbjct: 370 GDAKNMEYTFDQMRAEGMKADTKTFCCLIRGYANAGLFHKVVSSVQLAGKFEIPENTSFY 429

Query: 278 -------------TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL---LKR 321
                         E + +F    +    PDS+TY ++ +AY K  M + +  L    +R
Sbjct: 430 NAVISACAKAEDLIEMERVFNRMKDKHCQPDSTTYSIMVEAYKKEGMNDKIYDLEQERQR 489

Query: 322 MEQNG 326
           M  +G
Sbjct: 490 MVADG 494



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 116/285 (40%), Gaps = 37/285 (12%)

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           K   +AL  F+ ++     +P   TY  LL    ++    + + LF  + E    P    
Sbjct: 122 KQWLQALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTEL 181

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITF----------------------- 159
           Y  ++ +Y ++ +I E  S+L++MK+  +C+PD+ T+                       
Sbjct: 182 YTALLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASRFELVESLYEEM 241

Query: 160 ------------NLLIDSYGKRQAFDKMEQVFKSLMHS-KEKPTLPTFNSMIINYGKARL 206
                       N+++  YGK   FD+ME+V   ++ S   KP + T N+++  +G    
Sbjct: 242 DVRSITPNTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQ 301

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
               E  ++K       P   T+  +I  YG      +   + + + KL      ST N 
Sbjct: 302 IEIMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNN 361

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           ++EA+   G     +  F+     G+  D+ T+  L + Y  A +
Sbjct: 362 VIEAFSDVGDAKNMEYTFDQMRAEGMKADTKTFCCLIRGYANAGL 406


>gi|147820978|emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera]
          Length = 525

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 160/354 (45%), Gaps = 40/354 (11%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q +Y    G Y KL+ ++GK GQ   A  LF  M   GC P   +Y AL+ ++    
Sbjct: 134 LREQPFYQPKEGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTELYTALLASYC--- 190

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  + +A     +MK + RC+P++ TY+ LL+AC  A   + V +L++E+    + P+
Sbjct: 191 -RSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASRFELVESLYEEMDVRSITPN 249

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             T N V+  YGK G   EME VLS M +S   KPD+ T N ++  +G +   + ME+ +
Sbjct: 250 TVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKWY 309

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           +   +   +P   TFN +I  YGK R+  K   V + M  +++  +  TY  +I  +   
Sbjct: 310 EKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFSDV 369

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL----------------P------ 277
            +       FD++   G      T   ++  Y   GL                P      
Sbjct: 370 GDAKNMEYTFDQMRAEGMKADTKTFCCLIRGYANAGLFHKVVSSVQLAGKFEIPENTSFY 429

Query: 278 -------------TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
                         E + +F    +    PDS+TY ++ +AY K  M + +  L
Sbjct: 430 NAVISACAKAEDLIEMERVFNRMKDKHCQPDSTTYSIMVEAYKKEGMNDKIYDL 483



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 116/285 (40%), Gaps = 37/285 (12%)

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           K   +AL  F+ ++     +P   TY  LL    ++    + + LF  + E    P    
Sbjct: 122 KQWLQALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTEL 181

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITF----------------------- 159
           Y  ++ +Y ++ +I E  S+L++MK+  +C+PD+ T+                       
Sbjct: 182 YTALLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASRFELVESLYEEM 241

Query: 160 ------------NLLIDSYGKRQAFDKMEQVFKSLMHS-KEKPTLPTFNSMIINYGKARL 206
                       N+++  YGK   FD+ME+V   ++ S   KP + T N+++  +G    
Sbjct: 242 DVRSITPNTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQ 301

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
               E  ++K       P   T+  +I  YG      +   + + + KL      ST N 
Sbjct: 302 IEIMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNN 361

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           ++EA+   G     +  F+     G+  D+ T+  L + Y  A +
Sbjct: 362 VIEAFSDVGDAKNMEYTFDQMRAEGMKADTKTFCCLIRGYANAGL 406



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 43/214 (20%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D    + ++++ G KGQ  +    + + RN G  P+   +N LI A+   R   K ++  
Sbjct: 285 DVWTMNTILSLFGNKGQIEIMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDK-MSSV 343

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRA---CAQARNV----DQVNA--------------- 107
           + Y +K++          TYN ++ A      A+N+    DQ+ A               
Sbjct: 344 MEYMRKLQF----PWTTSTYNNVIEAFSDVGDAKNMEYTFDQMRAEGMKADTKTFCCLIR 399

Query: 108 ------LFKELHESI-------LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
                 LF ++  S+       +  +   YN V+ A  K   + EME V +RMK   C+P
Sbjct: 400 GYANAGLFHKVVSSVQLAGKFEIPENTSFYNAVISACAKAEDLIEMERVFNRMKDKHCQP 459

Query: 155 DIITFNLLIDSYGKRQAFDK---MEQVFKSLMHS 185
           D  T+++++++Y K    DK   +EQ  + +M S
Sbjct: 460 DSTTYSIMVEAYKKEGMNDKIYDLEQERQRMMCS 493


>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
          Length = 933

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 164/363 (45%), Gaps = 40/363 (11%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R  + D  +Y+  I  +   G+ + A    +EMRN G +PD S YN +I +H    + A
Sbjct: 547 DRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETA 606

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNIL------------------------------- 92
           KAL        +MK M   KPN++TYN L                               
Sbjct: 607 KALK----LLHEMK-MSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLT 661

Query: 93  ----LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
               L+AC+Q+R +D +  + + +  + L  DI  YN ++     +GM ++   VL  M 
Sbjct: 662 HRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEML 721

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
            +   PD ITFN LI  + K    D     +  ++H    P + TFN+++         G
Sbjct: 722 GSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIG 781

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           +A  V  +M      P+ +TY+ + T +G   N   A  ++ E+   G   KVST NA++
Sbjct: 782 EAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALI 841

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             +   G+ T+A  LF++    GV P S TY +L   +++      V+K LK M++ G  
Sbjct: 842 SDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFS 901

Query: 329 PNK 331
           P+K
Sbjct: 902 PSK 904



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 157/351 (44%), Gaps = 14/351 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M K+R    +   Y  LI    K      A+ ++ +M   G + +  + ++L+      R
Sbjct: 439 MMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNG---LR 495

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
              K + +A+  F+   G      + V Y  L+    +A ++       +EL +  + PD
Sbjct: 496 QNGK-IEEAMALFKDASG-SGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPD 553

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
              YN  ++     G  KE +S L+ M++   KPD  T+N +I S+ ++    K  ++  
Sbjct: 554 AVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLH 613

Query: 181 SLMHSKEKPTLPTFNSMIIN-YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
            +  S  KP L T+N+++   +G   ++ KA+Y+  +M +  ++PS +T+  ++      
Sbjct: 614 EMKMSSIKPNLITYNTLVAGLFGTGAVE-KAKYLLNEMVSAGFSPSSLTHRRVLQACSQS 672

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             +    +I + +   G    ++  N +L+  C +G+  +A ++ E     G+ PD+ T+
Sbjct: 673 RRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITF 732

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
             L   + K++  +       +M    I PN       + TF++ L G +S
Sbjct: 733 NALILGHCKSSHLDNAFATYAQMLHQNISPN-------IATFNTLLGGLES 776



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 143/348 (41%), Gaps = 32/348 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL------- 66
           Y+ L+A   + GQ   A  +   M+ +G  P+ + Y   I  +  T+   +A        
Sbjct: 207 YNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMV 266

Query: 67  ------------------------AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
                                   ++A   F++M  +    PN VTY  L+ + A+A   
Sbjct: 267 RNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVG-AAPNHVTYCTLIDSLAKAGRG 325

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
            ++ +L  E+    +  D+ TY  +MD  GK G   E++  L    S+   P+ +T+ +L
Sbjct: 326 KELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVL 385

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           ID+  K    D+ EQV   +      P + TF+S+I  + K  L  KA    + M     
Sbjct: 386 IDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGI 445

Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
            P+ +TY  +I  +        A E++ ++   G  +    +++++     NG   EA  
Sbjct: 446 NPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMA 505

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           LF+++   G++ D   Y  L     KA       K  + +    ++P+
Sbjct: 506 LFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPD 553



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 123/253 (48%), Gaps = 11/253 (4%)

Query: 37  MRNSGCRPDPSVYNALITA---HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 93
           M N+G   D +VYN L+     H  TR     L + LG            P+ +T+N L+
Sbjct: 685 MMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLG--------SGIAPDTITFNALI 736

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
               ++ ++D   A + ++    ++P+I T+N ++      G I E  +VL  M+ +  +
Sbjct: 737 LGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLE 796

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P+ +T+++L   +GK+    +  +++  ++     P + T+N++I ++ KA +  +A+ +
Sbjct: 797 PNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKEL 856

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F+ M      P+  TY+ +++ +    N +  ++   ++ + G      TL+ +  A+  
Sbjct: 857 FKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSK 916

Query: 274 NGLPTEADLLFEN 286
            G+  +A  L +N
Sbjct: 917 PGMTWQAQRLLKN 929



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 101/233 (43%), Gaps = 11/233 (4%)

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           L  D+  YN ++  + + G +     VL  MK     P++ T+   I  Y + +  ++  
Sbjct: 200 LPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAF 259

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
            +++ ++ +     + T ++++    +     +A  +F++M  +   P+ +TY  +I   
Sbjct: 260 DLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSL 319

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA--DLLFENSHNMGVTP 294
                      +  E+   G  M + T  A+++     G   E    L F  S N+  +P
Sbjct: 320 AKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNL--SP 377

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
           +  TY +L  A  KA+  +  +++L  ME+  I PN       + TFSS + G
Sbjct: 378 NGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPN-------VVTFSSVING 423



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 113/321 (35%), Gaps = 83/321 (25%)

Query: 43  RP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN 101
           RP DP+  NAL+ +H   R    A+A           +   +P  V YNILL A +   +
Sbjct: 69  RPADPASLNALLYSHCRLRLLRPAIAL----------LRSSRPTTVAYNILLAALSDHAH 118

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME-------------------- 141
                A+  E+ +  +  D  T N ++    +NG +                        
Sbjct: 119 AP---AVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALADRAGGITPWMSSAGTLS 175

Query: 142 --------------SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
                         SV  RM +     D++ +N L+  + +    D    V   +  +  
Sbjct: 176 LLDIAGFGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGV 235

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P + T                            YTP FI Y C          V  A +
Sbjct: 236 DPNVAT----------------------------YTP-FIVYYC------RTKGVEEAFD 260

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +++ + + G  + V TL+A++   C +G  +EA  LF     +G  P+  TY  L  +  
Sbjct: 261 LYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLA 320

Query: 308 KANMKELVQKLLKRMEQNGIV 328
           KA   + +  LL  M   G+V
Sbjct: 321 KAGRGKELLSLLGEMVSRGVV 341


>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 157/317 (49%), Gaps = 4/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +++  G+ G+ R A+ +F  M+ +GC+P+   YN +I A          L KAL  F
Sbjct: 237 YSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDA---CGKGGVDLKKALDIF 293

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M+  E  +P+ +T+N L+  C++    +    +F E+    +  DI+TYN ++DA  K
Sbjct: 294 EEMQ-KEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCK 352

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++   S++S M+     P+++T++ +ID YGK   F++   ++  +  S  +P   +
Sbjct: 353 GGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVS 412

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N++I  Y K      A    + M  +      +TY  +I  YG       A  +FD++ 
Sbjct: 413 YNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMK 472

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V T +A+++AY   G+  +A  +F      G+ PD   Y  L  +  K  + E
Sbjct: 473 AEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVE 532

Query: 314 LVQKLLKRMEQNGIVPN 330
               LL+ M Q GI PN
Sbjct: 533 DAVVLLQEMTQAGIQPN 549



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 146/354 (41%), Gaps = 76/354 (21%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           + S +I+ +G+ G+  +A+ +F+  + +G   +   Y+A+++A+     ++    +AL  
Sbjct: 201 LASIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAY----GRSGRCREALKV 256

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           FQ MK    CKPN++                                   TYN ++DA G
Sbjct: 257 FQAMK-KAGCKPNLI-----------------------------------TYNTIIDACG 280

Query: 133 KNGM-IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF------------ 179
           K G+ +K+   +   M+    +PD ITFN LI    +   ++  ++VF            
Sbjct: 281 KGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDI 340

Query: 180 -------------------KSLMHSKE----KPTLPTFNSMIINYGKARLQGKAEYVFQK 216
                               S+M S       P + T+++MI  YGK     +A  ++  
Sbjct: 341 FTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHD 400

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M      P  ++Y  +I +Y        A     ++ ++G    V T NA+++AY   G 
Sbjct: 401 MKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGK 460

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +A  LF+     G+ P+  TY  L  AY+KA M +    +    ++ G+ P+
Sbjct: 461 YKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPD 514



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 109/244 (44%), Gaps = 33/244 (13%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD   Y+ LI   GK+G+ + A  LF +M+  G  P+   Y+ALI A+     KA     
Sbjct: 443 ADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAY----SKAGMHQD 498

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A   F + K     KP++V Y+ L+ +C +   V+    L +E+ ++ + P+I TYN ++
Sbjct: 499 ATSIFVEFK-RAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLI 557

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           DAYG+NG +  +E+    M  N        FN         +  D+  ++    + S++ 
Sbjct: 558 DAYGRNGQVDNVEAAKGNMPIN-------VFN---------KVGDRSTEIICKTLTSQQN 601

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
               T     ++            VF +M      P+ +T+  I+     C ++  A  +
Sbjct: 602 ANDHTGVLAAVS------------VFHEMQQFGLKPNVVTFSAILNACSRCSSLQEASVL 649

Query: 249 FDEL 252
            +++
Sbjct: 650 LEQM 653


>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 933

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 164/363 (45%), Gaps = 40/363 (11%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R  + D  +Y+  I  +   G+ + A    +EMRN G +PD S YN +I +H    + A
Sbjct: 547 DRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETA 606

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNIL------------------------------- 92
           KAL        +MK M   KPN++TYN L                               
Sbjct: 607 KALK----LLHEMK-MSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLT 661

Query: 93  ----LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
               L+AC+Q+R +D +  + + +  + L  DI  YN ++     +GM ++   VL  M 
Sbjct: 662 HRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEML 721

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
            +   PD ITFN LI  + K    D     +  ++H    P + TFN+++         G
Sbjct: 722 GSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIG 781

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           +A  V  +M      P+ +TY+ + T +G   N   A  ++ E+   G   KVST NA++
Sbjct: 782 EAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALI 841

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             +   G+ T+A  LF++    GV P S TY +L   +++      V+K LK M++ G  
Sbjct: 842 SDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFS 901

Query: 329 PNK 331
           P+K
Sbjct: 902 PSK 904



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 157/351 (44%), Gaps = 14/351 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M K+R    +   Y  LI    K      A+ ++ +M   G + +  + ++L+      R
Sbjct: 439 MMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNG---LR 495

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
              K + +A+  F+   G      + V Y  L+    +A ++       +EL +  + PD
Sbjct: 496 QNGK-IEEAMALFKDASG-SGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPD 553

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
              YN  ++     G  KE +S L+ M++   KPD  T+N +I S+ ++    K  ++  
Sbjct: 554 AVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLH 613

Query: 181 SLMHSKEKPTLPTFNSMIIN-YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
            +  S  KP L T+N+++   +G   ++ KA+Y+  +M +  ++PS +T+  ++      
Sbjct: 614 EMKMSSIKPNLITYNTLVAGLFGTGAVE-KAKYLLNEMVSAGFSPSSLTHRRVLQACSQS 672

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             +    +I + +   G    ++  N +L+  C +G+  +A ++ E     G+ PD+ T+
Sbjct: 673 RRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITF 732

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
             L   + K++  +       +M    I PN       + TF++ L G +S
Sbjct: 733 NALILGHCKSSHLDNAFATYAQMLHQNISPN-------IATFNTLLGGLES 776



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 143/348 (41%), Gaps = 32/348 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL------- 66
           Y+ L+A   + GQ   A  +   M+ +G  P+ + Y   I  +  T+   +A        
Sbjct: 207 YNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMV 266

Query: 67  ------------------------AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
                                   ++A   F++M  +    PN VTY  L+ + A+A   
Sbjct: 267 RNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVG-AAPNHVTYCTLIDSLAKAGRG 325

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
            ++ +L  E+    +  D+ TY  +MD  GK G   E++  L    S+   P+ +T+ +L
Sbjct: 326 KELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVL 385

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           ID+  K    D+ EQV   +      P + TF+S+I  + K  L  KA    + M     
Sbjct: 386 IDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGI 445

Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
            P+ +TY  +I  +        A E++ ++   G  +    +++++     NG   EA  
Sbjct: 446 NPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMA 505

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           LF+++   G++ D   Y  L     KA       K  + +    ++P+
Sbjct: 506 LFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPD 553



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 123/253 (48%), Gaps = 11/253 (4%)

Query: 37  MRNSGCRPDPSVYNALITA---HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 93
           M N+G   D +VYN L+     H  TR     L + LG            P+ +T+N L+
Sbjct: 685 MMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLG--------SGIAPDTITFNALI 736

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
               ++ ++D   A + ++    ++P+I T+N ++      G I E  +VL  M+ +  +
Sbjct: 737 LGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLE 796

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P+ +T+++L   +GK+    +  +++  ++     P + T+N++I ++ KA +  +A+ +
Sbjct: 797 PNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKEL 856

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F+ M      P+  TY+ +++ +    N +  ++   ++ + G      TL+ +  A+  
Sbjct: 857 FKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSK 916

Query: 274 NGLPTEADLLFEN 286
            G+  +A  L +N
Sbjct: 917 PGMTWQAQRLLKN 929



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 117/287 (40%), Gaps = 15/287 (5%)

Query: 43  RP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN 101
           RP DP+  NAL+ +H   R    A+A           +   +P  V YNILL A +   +
Sbjct: 69  RPADPASLNALLYSHCRLRLLRPAIAL----------LRSSRPTTVAYNILLAALSDHAH 118

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
                A+  E+ +  +  D  T N ++    +NG +    ++  R        D+I +N 
Sbjct: 119 AP---AVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALADRGGGIHAL-DVIGWNT 174

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           LI  Y +         V   +        +  +N+++  + +A     A  V   M    
Sbjct: 175 LIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAG 234

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
             P+  TY   I  Y     V  A ++++ + + G  + V TL+A++   C +G  +EA 
Sbjct: 235 VDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAY 294

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
            LF     +G  P+  TY  L  +  KA   + +  LL  M   G+V
Sbjct: 295 ALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVV 341



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/338 (20%), Positives = 136/338 (40%), Gaps = 24/338 (7%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALG 71
           Y+ L+A +        A  + +EM   G   D    N L+         D A ALA   G
Sbjct: 106 YNILLAALSDHAH---APAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALADRGG 162

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
               +        +++ +N L+    +  +     ++   +    L  D+  YN ++  +
Sbjct: 163 GIHAL--------DVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGF 214

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G +     VL  MK     P++ T+   I  Y + +  ++   +++ ++ +     +
Sbjct: 215 CRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDV 274

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T ++++    +     +A  +F++M  +   P+ +TY  +I              +  E
Sbjct: 275 VTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGE 334

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEA--DLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +   G  M + T  A+++     G   E    L F  S N+  +P+  TY +L  A  KA
Sbjct: 335 MVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNL--SPNGVTYTVLIDALCKA 392

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
           +  +  +++L  ME+  I PN       + TFSS + G
Sbjct: 393 HNVDEAEQVLLEMEEKSISPN-------VVTFSSVING 423


>gi|357120957|ref|XP_003562190.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Brachypodium distachyon]
          Length = 454

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 165/343 (48%), Gaps = 6/343 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEM-RNSGCRPDPSVYNALITAHLHT 59
           M+KQRWY   T  Y++L+ ++GK  Q   A  LF  M       P   VY AL+ A+ ++
Sbjct: 83  MRKQRWYEPRTRTYARLLMMLGKCRQPGPAAALFRVMLSEERLAPTVDVYTALVGAYGYS 142

Query: 60  RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
                 L +AL   + MKG   CKP+  T++IL+  C ++R  D +  +  E+    +  
Sbjct: 143 ----GMLDEALATVELMKGAADCKPDEYTFSILINCCCKSRRFDLIPPVLDEMSYLGIGC 198

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           ++  +N ++D YGK GM+ EM + L  M +     PDI T N +I +YG R   D ME+ 
Sbjct: 199 NVVIHNAIIDGYGKAGMLAEMGTALCNMLEDGDNVPDIYTMNSIIWAYGNRGRVDDMEKW 258

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           +        +P   TFN MI +YGKA +  K   V + M    ++P+  T+  II  +G 
Sbjct: 259 YSEFQLMGVEPDSRTFNIMIKSYGKANMHEKMMMVLKYMKRRFFSPTAATFNIIIECFGR 318

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             ++ +    F  +   G      T  +++  Y   G+  +   +   + N  V  D+  
Sbjct: 319 AGDIEKMEYYFRLMKIQGIKPNPITYCSLVNGYSKAGILDKVPAIIRQTENTDVVLDTPF 378

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           +  +  AY K+   ++++++L+ M++    P K  +   ++ +
Sbjct: 379 FNCVINAYAKSGDIKIMEEMLQLMKEKKCKPGKVIYTTMIQAY 421



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 124/314 (39%), Gaps = 38/314 (12%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE-LHESILAPDIYTYNGV 127
           AL  F+ M+     +P   TY  LL    + R      ALF+  L E  LAP +  Y  +
Sbjct: 76  ALEIFELMRKQRWYEPRTRTYARLLMMLGKCRQPGPAAALFRVMLSEERLAPTVDVYTAL 135

Query: 128 MDAYGKNGMIKEMESVLSRMK-SNQCKPDIITFNLLI----------------------- 163
           + AYG +GM+ E  + +  MK +  CKPD  TF++LI                       
Sbjct: 136 VGAYGYSGMLDEALATVELMKGAADCKPDEYTFSILINCCCKSRRFDLIPPVLDEMSYLG 195

Query: 164 ------------DSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTFNSMIINYGKARLQGKA 210
                       D YGK     +M     +++   +  P + T NS+I  YG        
Sbjct: 196 IGCNVVIHNAIIDGYGKAGMLAEMGTALCNMLEDGDNVPDIYTMNSIIWAYGNRGRVDDM 255

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
           E  + +   M   P   T+  +I  YG  +   +   +   + +       +T N ++E 
Sbjct: 256 EKWYSEFQLMGVEPDSRTFNIMIKSYGKANMHEKMMMVLKYMKRRFFSPTAATFNIIIEC 315

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +   G   + +  F      G+ P+  TY  L   Y+KA + + V  ++++ E   +V +
Sbjct: 316 FGRAGDIEKMEYYFRLMKIQGIKPNPITYCSLVNGYSKAGILDKVPAIIRQTENTDVVLD 375

Query: 331 KRFFLEALETFSSS 344
             FF   +  ++ S
Sbjct: 376 TPFFNCVINAYAKS 389


>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
          Length = 1443

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 166/326 (50%), Gaps = 3/326 (0%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           A   +++ ++ V  + G+   A  L   MR+    PD   +N LI A   +   A  +A 
Sbjct: 219 ATVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVAL 278

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
            L +  +  G+   +P+ +TYN L+ AC+Q  N+D   A+F+E+  S   PD++TYN ++
Sbjct: 279 ELLHEVRQAGL---RPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMV 335

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
             +G+ G  +E E +   +     +PD +T+N L+ ++ K    +++E+V + L+ +  +
Sbjct: 336 SVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFR 395

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
               T+N+MI  YGK      A  ++ +M A+  TP  +TY  ++   G  D +S A ++
Sbjct: 396 KDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKV 455

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            +E++  G    + T +A++ AY  +G   +A+  F+     GV PD   Y ++   + +
Sbjct: 456 LEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFAR 515

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
           ++    +  L + M ++G  P+   +
Sbjct: 516 SDETRKLMVLYRAMIKDGYKPDDGLY 541



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 138/312 (44%), Gaps = 7/312 (2%)

Query: 14  YSKLIAVMGKKG--QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           ++ LI    K G     +A+ L  E+R +G RPD   YN LI+A      +   L  A+ 
Sbjct: 259 FNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISAC----SQGSNLDDAVA 314

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            F++M   E C+P++ TYN ++    +     +   +FKEL E    PD  TYN ++ A+
Sbjct: 315 VFEEMIASE-CRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAF 373

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G ++ +E V   +     + D IT+N +I  YGK    D    ++  +      P  
Sbjct: 374 AKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDA 433

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+  ++ + GK     +A  V ++M      P+ +T+  +I  Y        A   FD 
Sbjct: 434 VTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDR 493

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G          ML+ +  +    +  +L+      G  PD   Y++L  A  K N 
Sbjct: 494 MVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNE 553

Query: 312 KELVQKLLKRME 323
            + ++ +++ ME
Sbjct: 554 HDEIEGVIQDME 565



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 134/264 (50%), Gaps = 2/264 (0%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNAL--FKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140
           +P++V++N L+ A A++  +    AL    E+ ++ L PD  TYN ++ A  +   + + 
Sbjct: 253 EPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDA 312

Query: 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
            +V   M +++C+PD+ T+N ++  +G+     + E +FK L+    +P   T+NS++  
Sbjct: 313 VAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYA 372

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
           + K     + E V +++    +    ITY  +I MYG    +  A  ++DE+  +G    
Sbjct: 373 FAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPD 432

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
             T   ++++       +EA  + E   + G+ P   T+  L  AY K+  ++  ++   
Sbjct: 433 AVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFD 492

Query: 321 RMEQNGIVPNKRFFLEALETFSSS 344
           RM ++G+ P++  +L  L+ F+ S
Sbjct: 493 RMVESGVKPDRLAYLVMLDVFARS 516



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 81/392 (20%), Positives = 155/392 (39%), Gaps = 70/392 (17%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH------------- 56
           D   Y+ +++V G+ G+ + A  +F E+   G +PD   YN+L+ A              
Sbjct: 327 DLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVC 386

Query: 57  ------------------LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
                             +H   K   L  ALG + +M+ +  C P+ VTY +L+ +  +
Sbjct: 387 EELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIG-CTPDAVTYTVLVDSLGK 445

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
              + +   + +E+ ++ L P + T++ ++ AY K+G   + E    RM  +  KPD + 
Sbjct: 446 MDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLA 505

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           + +++D + +     K+  ++++++    KP    +  ++    K     + E V Q M 
Sbjct: 506 YLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDME 565

Query: 219 A------MKYTPSFITYECI---------ITMYGYCDNVSRAREIFDELSKLGKDMK--- 260
           A      +  +   I  ECI           + GY  +      I D   K+GK  K   
Sbjct: 566 AVFEMNPLVISSILIKAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLS 625

Query: 261 ---------------VSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLL 302
                          +S  + ML   C NG   +A   +     +       D   Y+ L
Sbjct: 626 LLEWIRQHVPNSHNLISECSIML--LCKNGKIVDAIQEYSRKQMLKRGSFGQDCDLYEYL 683

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
                +A +     ++   M+  GIVP+++ F
Sbjct: 684 ITYLEEAELFPEACQVFCDMQFLGIVPSQKVF 715



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/361 (20%), Positives = 158/361 (43%), Gaps = 42/361 (11%)

Query: 10   DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
            D  I++ LI    + G    A  +F  M   G  P     N ++ A L    +   L   
Sbjct: 781  DRRIWNALIHAYAESGLYEHARAIFDIMIKKGPLPTVESVNGMMRA-LIVDGRLDELYVV 839

Query: 70   LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            +   Q +      K +  T  ++L A A+A +V +V  ++  +  +   P+++ Y  ++ 
Sbjct: 840  VQELQDLD----IKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMIS 895

Query: 130  AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
                N   +++E +++ M+    KPD++  N L+  Y     FD+  +V+ S++ +  +P
Sbjct: 896  LLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEP 955

Query: 190  TLPTFNSMIINY-----------------------------------GKARLQGKAEYVF 214
               T+N++I+ Y                                   GKA+L  +A+ +F
Sbjct: 956  DEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLF 1015

Query: 215  QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
            ++M    Y  +   Y  ++ +Y    N S+A  +   + + G +  ++T++ ++ +Y  +
Sbjct: 1016 EEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTS 1075

Query: 275  GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL-VQKLLKRMEQNGIVPNKRF 333
            G P EA+ +  +  +  +   +  Y  +  AY +     L + KLL+ M+++G+ P+ + 
Sbjct: 1076 GHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGITKLLE-MKRDGVEPDHQV 1134

Query: 334  F 334
            +
Sbjct: 1135 W 1135



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 141/320 (44%), Gaps = 25/320 (7%)

Query: 17   LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT---RDKAKALAKALGYF 73
            ++    K G     M +++ M+ +G  P+  +Y  +I+   H    RD    +A+  G  
Sbjct: 858  MLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEG-- 915

Query: 74   QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
                G    KP++V  N LL       N D+   ++  + E+ L PD  TYN ++  Y +
Sbjct: 916  ---AGF---KPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSR 969

Query: 134  NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            N   +E  ++L  M      P + ++ +L+ + GK + +++ + +F+ +     +     
Sbjct: 970  NFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSI 1029

Query: 194  FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            ++ M+  Y  AR   KAE++   M      P+  T   ++T YG   +   A ++ + L 
Sbjct: 1030 YHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLK 1089

Query: 254  KLGKDMKVSTL--NAMLEAYCMN-----GLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
                ++++STL  + +L+AY  N     G+      L E   + GV PD   +    +A 
Sbjct: 1090 --SSNLEISTLPYSTVLDAYLRNRDYSLGITK----LLEMKRD-GVEPDHQVWTSFIRAA 1142

Query: 307  TKANMKELVQKLLKRMEQNG 326
            +     +    LLK ++  G
Sbjct: 1143 SLCEQTDDAILLLKSLQDCG 1162


>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
 gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
          Length = 1283

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 169/336 (50%), Gaps = 9/336 (2%)

Query: 5   RW------YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH 58
           RW      ++    +++ ++ V  + G+   A  L   MR+    PD   +N LI A   
Sbjct: 49  RWPHLRFPHLPTVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAK 108

Query: 59  TRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
           +   A  +A  L +  +  G+   +P+ +TYN L+ AC+Q  N+D   A+F+E+  S   
Sbjct: 109 SGCLAAGVALELLHEVRQAGL---RPDAITYNTLISACSQGSNLDDAVAVFEEMIASECR 165

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD++TYN ++  +G+ G  +E E +   +     +PD +T+N L+ ++ K    +++E+V
Sbjct: 166 PDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERV 225

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
            + L+ +  +    T+N+MI  YGK      A  ++ +M A+  TP  +TY  ++   G 
Sbjct: 226 CEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGK 285

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
            D +S A ++ +E++  G    + T +A++ AY  +G   +A+  F+     GV PD   
Sbjct: 286 MDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLA 345

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           Y ++   + +++    +  L + M ++G  P+   +
Sbjct: 346 YLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLY 381



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 138/312 (44%), Gaps = 7/312 (2%)

Query: 14  YSKLIAVMGKKG--QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           ++ LI    K G     +A+ L  E+R +G RPD   YN LI+A      +   L  A+ 
Sbjct: 99  FNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISAC----SQGSNLDDAVA 154

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            F++M   E C+P++ TYN ++    +     +   +FKEL E    PD  TYN ++ A+
Sbjct: 155 VFEEMIASE-CRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAF 213

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G ++ +E V   +     + D IT+N +I  YGK    D    ++  +      P  
Sbjct: 214 AKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDA 273

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+  ++ + GK     +A  V ++M      P+ +T+  +I  Y        A   FD 
Sbjct: 274 VTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDR 333

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G          ML+ +  +    +  +L+      G  PD   Y++L  A  K N 
Sbjct: 334 MVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNE 393

Query: 312 KELVQKLLKRME 323
            + ++ +++ ME
Sbjct: 394 HDEIEGVIQDME 405



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 151/305 (49%), Gaps = 11/305 (3%)

Query: 44  PDPSVYNALITAHLHTR--DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN 101
           P   V+NA++  +  +   D A+ L  A      M+  +  +P++V++N L+ A A++  
Sbjct: 59  PTVQVFNAMMGVYARSGRFDDARQLLDA------MRDQD-IEPDLVSFNTLINARAKSGC 111

Query: 102 VDQVNAL--FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
           +    AL    E+ ++ L PD  TYN ++ A  +   + +  +V   M +++C+PD+ T+
Sbjct: 112 LAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTY 171

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
           N ++  +G+     + E +FK L+    +P   T+NS++  + K     + E V +++  
Sbjct: 172 NAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVK 231

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
             +    ITY  +I MYG    +  A  ++DE+  +G      T   ++++       +E
Sbjct: 232 AGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISE 291

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
           A  + E   + G+ P   T+  L  AY K+  ++  ++   RM ++G+ P++  +L  L+
Sbjct: 292 AGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLD 351

Query: 340 TFSSS 344
            F+ S
Sbjct: 352 VFARS 356



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/311 (21%), Positives = 129/311 (41%), Gaps = 47/311 (15%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH------------- 56
           D   Y+ +++V G+ G+ + A  +F E+   G +PD   YN+L+ A              
Sbjct: 167 DLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVC 226

Query: 57  ------------------LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
                             +H   K   L  ALG + +M+ +  C P+ VTY +L+ +  +
Sbjct: 227 EELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIG-CTPDAVTYTVLVDSLGK 285

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
              + +   + +E+ ++ L P + T++ ++ AY K+G   + E    RM  +  KPD + 
Sbjct: 286 MDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLA 345

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           + +++D + +     K+  ++++++    KP    +  ++    K     + E V Q M 
Sbjct: 346 YLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDME 405

Query: 219 A------MKYTPSFITYECI---------ITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A      +  +   I  ECI           + GY  +      I D   K+GK  K  +
Sbjct: 406 AVFEMNPLVISSILIKAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLS 465

Query: 264 LNAMLEAYCMN 274
           L   +  +  N
Sbjct: 466 LLEWIRQHVPN 476



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/362 (20%), Positives = 158/362 (43%), Gaps = 42/362 (11%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  I++ LI    + G    A  +F  M   G  P     N ++ A L    +   L  
Sbjct: 620 VDRRIWNALIHAYAESGLYEHARAIFDIMIKKGPLPTVESVNGMMRA-LIVDGRLDELYV 678

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
            +   Q +      K +  T  ++L A A+A +V +V  ++  +  +   P+++ Y  ++
Sbjct: 679 VVQELQDLD----IKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMI 734

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
                N   +++E +++ M+    KPD++  N L+  Y     FD+  +V+ S++ +  +
Sbjct: 735 SLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLE 794

Query: 189 PTLPTFNSMIINY-----------------------------------GKARLQGKAEYV 213
           P   T+N++I+ Y                                   GKA+L  +A+ +
Sbjct: 795 PDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLL 854

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F++M    Y  +   Y  ++ +Y    N S+A  +   + + G +  ++T++ ++ +Y  
Sbjct: 855 FEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGT 914

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL-VQKLLKRMEQNGIVPNKR 332
           +G P EA+ +  +  +  +   +  Y  +  AY +     L + KLL+ M+++G+ P+ +
Sbjct: 915 SGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGITKLLE-MKRDGVEPDHQ 973

Query: 333 FF 334
            +
Sbjct: 974 VW 975



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 143/330 (43%), Gaps = 25/330 (7%)

Query: 17   LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT---RDKAKALAKALGYF 73
            ++    K G     M +++ M+ +G  P+  +Y  +I+   H    RD    +A+  G  
Sbjct: 698  MLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEG-- 755

Query: 74   QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
                G    KP++V  N LL       N D+   ++  + E+ L PD  TYN ++  Y +
Sbjct: 756  ---AGF---KPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSR 809

Query: 134  NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            N   +E  ++L  M      P + ++ +L+ + GK + +++ + +F+ +     +     
Sbjct: 810  NFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSI 869

Query: 194  FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            ++ M+  Y  AR   KAE++   M      P+  T   ++T YG   +   A ++ + L 
Sbjct: 870  YHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLK 929

Query: 254  KLGKDMKVSTL--NAMLEAYCMN-----GLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
                ++++STL  + +L+AY  N     G+      L E   + GV PD   +    +A 
Sbjct: 930  --SSNLEISTLPYSTVLDAYLRNRDYSLGITK----LLEMKRD-GVEPDHQVWTSFIRAA 982

Query: 307  TKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
            +     +    LLK ++  G     R   E
Sbjct: 983  SLCEQTDDAILLLKSLQDCGFDLPIRLLTE 1012



 Score = 37.7 bits (86), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 141/369 (38%), Gaps = 47/369 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  ++ V  +  +TR  M L+  M   G +PD  +Y  L+ A      K     +  G  
Sbjct: 346 YLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAA----LAKGNEHDEIEGVI 401

Query: 74  QKMKGMERCKPNIVT------------YNILLRACAQARNVDQVNAL-----FKEL--HE 114
           Q M+ +    P +++             ++L RAC Q    D  + L     ++++  HE
Sbjct: 402 QDMEAVFEMNPLVISSILIKAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHE 461

Query: 115 SILAPDIYTYNGVMDAYG-----------KNGMIKEMESVLSR---MKSNQCKPDIITFN 160
             L+   +    V +++            KNG I +     SR   +K      D   + 
Sbjct: 462 KGLSLLEWIRQHVPNSHNLISECSIMLLCKNGKIVDAIQEYSRKQMLKRGSFGQDCDLYE 521

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT-A 219
            LI    + + F +  QVF  +      P+   + S+I  Y   RL G  E  +Q M  A
Sbjct: 522 YLITYLEEAELFPEACQVFCDMQFLGIVPSQKIYQSII--YTCCRL-GFPETAYQLMDDA 578

Query: 220 MKYTPSFITYECIITM---YGYCDNVSRAREIFDEL-SKLGKDMKVSTLNAMLEAYCMNG 275
            +   S     C + M   YG      +A      L  + G D ++   NA++ AY  +G
Sbjct: 579 ARSDISLNILSCRVAMIEAYGKLKLWQQAENFVKGLKQESGVDRRI--WNALIHAYAESG 636

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335
           L   A  +F+     G  P   +   + +A       + +  +++ ++   I  +K   L
Sbjct: 637 LYEHARAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVL 696

Query: 336 EALETFSSS 344
             LE F+ +
Sbjct: 697 LMLEAFAKA 705


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 159/342 (46%), Gaps = 5/342 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   Y  L+A + K G+  +A+ +F +  N  C PD   Y+ LI        K
Sbjct: 258 RERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLC----K 313

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A  L +A   F+KM+    C+P++VT+  L+    +   + +   + + + +    P++ 
Sbjct: 314 AGRLDEACKLFEKMR-ENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVI 372

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY+ ++D   K G +++ + V  RM     +P+++T+N LI  +      D    + + +
Sbjct: 373 TYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEM 432

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
             +   P + T+N++I    K     +A  +F  M A    P  ITY C+I  +   + +
Sbjct: 433 TATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERI 492

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             AR +FD++ K      V T + ++E YC  GL  +A+ L E       +PD  TY  L
Sbjct: 493 DMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSL 552

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
              + K       +++LKRM + G  PN   +   ++ F  +
Sbjct: 553 VDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRA 594



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 155/349 (44%), Gaps = 36/349 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH------------L 57
           D   YS LIA + K G+   A  LF +MR + C PD   + AL+               L
Sbjct: 300 DVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVL 359

Query: 58  HTRDKAKALAKALGY-------------------FQKM--KGMERCKPNIVTYNILLRAC 96
            T +        + Y                   F++M  +G+E   PN+VTYN L+   
Sbjct: 360 ETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIE---PNVVTYNSLIHGF 416

Query: 97  AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
                VD    L +E+  +   PDI TYN ++D   K G   E   +   MK+  C PD+
Sbjct: 417 CMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDV 476

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           IT++ LI  + K +  D    +F  ++     P + TF++++  Y  A L   AE + ++
Sbjct: 477 ITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEE 536

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M A   +P   TY  ++  +     +  AR +   ++K G    V T  A+++A+C  G 
Sbjct: 537 MVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGK 596

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
           PT A  L E     GV P+  TY+ L   +      E  +K+L+R+E++
Sbjct: 597 PTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERD 645



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 159/352 (45%), Gaps = 20/352 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT--RDKAKALAKALG 71
           YS +I    ++ +   A  LF +M  +GC P+   YN L++        D+A  L   + 
Sbjct: 199 YSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEM- 257

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
              + +G++   P+  +Y+ L+    +   +D    +F++       PD+  Y+ ++   
Sbjct: 258 ---RERGLQ---PDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGL 311

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G + E   +  +M+ N C+PD++TF  L+D   K     + +QV +++      P +
Sbjct: 312 CKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNV 371

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIF 249
            T++S+I    K      A+ VF++M      P+ +TY  +I  +G+C  + V  A  + 
Sbjct: 372 ITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLI--HGFCMTNGVDSALLLM 429

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +E++  G    + T N +++  C  G   EA+ LF +       PD  TY  L   + K 
Sbjct: 430 EEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKL 489

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRSL 361
              ++ + L   M +  ++P+       + TFS+ + G  +     D  R L
Sbjct: 490 ERIDMARTLFDDMLKQAVLPD-------VVTFSTLVEGYCNAGLVDDAERLL 534



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 149/319 (46%), Gaps = 12/319 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + K G    A  L  EMR SG  PD ++YN +I    H   KA+  AKAL YF
Sbjct: 62  YAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVI----HALCKARNTAKALDYF 117

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M+    C+ N++T+ I++    +A  + +    F ++ +    P+ +TYN +++ + K
Sbjct: 118 RSME----CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCK 173

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              +     +L  MK +   P+++T++ +I  + ++   D   ++F+ ++ +   P L T
Sbjct: 174 VHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVT 233

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDE 251
           +N+++    +  L  +A  +  +M      P   +Y+ +  M G C    +  A ++F++
Sbjct: 234 YNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTL--MAGLCKTGKIDMALKVFED 291

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
            S       V   + ++   C  G   EA  LFE        PD  T+  L     K + 
Sbjct: 292 NSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDR 351

Query: 312 KELVQKLLKRMEQNGIVPN 330
            +  Q++L+ ME     PN
Sbjct: 352 LQEAQQVLETMEDRNCTPN 370



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 3/263 (1%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL +F      +    N+ TYN L  A  +AR +D+   + K      + P+++TY  V+
Sbjct: 7   ALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVI 66

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
               K+G + +   +L  M+ +   PD   +N +I +  K +   K    F+S+   K  
Sbjct: 67  QGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEK-- 124

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+  MI    KA    +A   F KM      P+  TY  +I  +     V RA  +
Sbjct: 125 -NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLL 183

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             E+ + G    V T + ++  +C       A  LF      G  P+  TY  L     +
Sbjct: 184 LKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCR 243

Query: 309 ANMKELVQKLLKRMEQNGIVPNK 331
             + +   +LL  M + G+ P+K
Sbjct: 244 NGLMDEAYELLDEMRERGLQPDK 266



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 108/247 (43%), Gaps = 7/247 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   +S L+      G    A  L  EM  S C PD   Y +L+        K   + 
Sbjct: 508 LPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFC----KVGRMV 563

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A    ++M     C+PN+VTY  L+ A  +A        L +E+  + + P++ TY  +
Sbjct: 564 EARRVLKRM-AKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSL 622

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +  +   G ++E   +L R++ ++ CK D+  + +++D   +        ++ +++  S 
Sbjct: 623 IGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSG 682

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMT-AMKYTPSFITYECIITMYGYCDNVSRA 245
             P    + ++I    + +  GKA  V ++MT + K  P+   YE +I           A
Sbjct: 683 TPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEA 742

Query: 246 REIFDEL 252
             + DEL
Sbjct: 743 NALADEL 749


>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic [Vitis vinifera]
          Length = 869

 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 170/346 (49%), Gaps = 8/346 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ+Q W   +  IY+ +I V+G++G       +F EM + G  P    + ALI A+    
Sbjct: 136 MQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSFTALINAY---- 191

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKEL-HESILA 118
            +      +L    +MK  ER  P+I+TYN ++ +CA+   + +++  LF ++ HE I A
Sbjct: 192 GRNGQYKSSLELLDRMK-KERVSPSILTYNTVINSCARGGLDWEELLGLFAQMRHEGIQA 250

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
            DI TYN ++ A  + G+  E E V   M      PDI T++ L++++GK    +K+ ++
Sbjct: 251 -DIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSEL 309

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
            K +      P + ++N ++  + ++    +A  VF++M      P+  TY  ++ +YG 
Sbjct: 310 LKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGR 369

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
                  R++F E+     +   +T N ++  +   G   E   LF +     V P+  T
Sbjct: 370 HGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMET 429

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           Y+ L  A  K  + E  +K+L  M + G+VP+ + +   +E +  +
Sbjct: 430 YEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQA 475



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 158/358 (44%), Gaps = 46/358 (12%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   YS L+   GK  +      L  EM + G  PD + YN L+ AH     ++ ++ 
Sbjct: 284 LPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHA----QSGSIK 339

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A+G F++M+G   C PN  TY+ILL    +    D V  LF E+  S   P+  TYN +
Sbjct: 340 EAMGVFRQMQGA-GCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNIL 398

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++ +G+ G  KE+ ++   M     +P++ T+  LI + GK    +  +++   L+H  E
Sbjct: 399 INVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKI---LLHMNE 455

Query: 188 KPTLPT---FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC----- 239
           K  +P+   +  +I  YG+A L  +A   F  M  +   P+  TY  +I M+        
Sbjct: 456 KGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKE 515

Query: 240 ----------DNVSRAREIFD--------------------ELSKLGKDMKVSTLNAMLE 269
                       V+R R+ F+                    E+ K   D    TL A+L 
Sbjct: 516 SEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLS 575

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
            YC  GL  E++  F     +G+ P    Y ++   Y KA+  +   +LL  M  N +
Sbjct: 576 VYCFAGLVEESEEQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMFTNRV 633



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 155/333 (46%), Gaps = 5/333 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD   Y+ L++   ++G    A  +F  M   G  PD + Y+ L+     T  K   L K
Sbjct: 250 ADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLV----ETFGKLNRLEK 305

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
                ++M+      P+I +YN+LL A AQ+ ++ +   +F+++  +   P+  TY+ ++
Sbjct: 306 VSELLKEMESGGSF-PDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILL 364

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + YG++G   ++  +   MK +  +P+  T+N+LI+ +G+   F ++  +F  ++    +
Sbjct: 365 NLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVE 424

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P + T+  +I   GK  L   A+ +   M      PS   Y  +I  YG       A   
Sbjct: 425 PNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVA 484

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F+ ++++G    V T N++++ +   GL  E++ +       GV  +  T+  + +A+ +
Sbjct: 485 FNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQ 544

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
               E   K    ME+    P+++     L  +
Sbjct: 545 GGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVY 577



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 132/264 (50%), Gaps = 1/264 (0%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           ++L  F+ M+    CKPN   Y I++    +   +++   +F E+    +AP ++++  +
Sbjct: 128 RSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSFTAL 187

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA-FDKMEQVFKSLMHSK 186
           ++AYG+NG  K    +L RMK  +  P I+T+N +I+S  +    ++++  +F  + H  
Sbjct: 188 INAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVINSCARGGLDWEELLGLFAQMRHEG 247

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +  + T+N+++    +  L  +AE VF+ M      P   TY  ++  +G  + + +  
Sbjct: 248 IQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVS 307

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+  E+   G    +++ N +LEA+  +G   EA  +F      G  P+++TY +L   Y
Sbjct: 308 ELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLY 367

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            +    + V+ L   M+ +   PN
Sbjct: 368 GRHGRYDDVRDLFLEMKVSNTEPN 391



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/365 (20%), Positives = 135/365 (36%), Gaps = 88/365 (24%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + +   YS L+ + G+ G+      LF EM+ S   P+ + YN LI              
Sbjct: 354 VPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEG-------- 405

Query: 68  KALGYFQKMKGM------ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
              GYF+++  +      E  +PN+ TY  L+ AC +    +    +   ++E  + P  
Sbjct: 406 ---GYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSS 462

Query: 122 YTYNGVMDAYG-----------------------------------KNGMIKEMESVLSR 146
             Y GV++AYG                                   K G+ KE E++L +
Sbjct: 463 KAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLK 522

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           M  +    +  TFN +I+++ +   F++  + +  +  ++  P   T  +++  Y  A L
Sbjct: 523 MGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGL 582

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE--------------- 251
             ++E  F ++ A+   PS + Y  ++ +Y   D    A ++ DE               
Sbjct: 583 VEESEEQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMFTNRVSNIHQVIGQ 642

Query: 252 ---------------------LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
                                L   G  + V   N +LEA    G    A  +   +   
Sbjct: 643 MIRGDYDDDSNWQMVEYVFEKLKSEGCSLGVRFYNTLLEALWWLGQKERATRVLNEATKR 702

Query: 291 GVTPD 295
           G+ P+
Sbjct: 703 GLFPE 707


>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 779

 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 166/345 (48%), Gaps = 6/345 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ+ +W   +  +Y+ +I +MG++G    A  LF +M  +    +   + ALI A+    
Sbjct: 64  MQRHQWCKPNEHVYTIMIGIMGREGMLDKASELFEDMPLNDVEWNVYSFTALINAYGRNG 123

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAP 119
               +L        +MK  E+  PN++TYN ++ ACA+     + +  LF ++    + P
Sbjct: 124 QHEASLH----LLARMK-REKVTPNLITYNTVINACAKGGLEWEGLLGLFAQMRHEGIQP 178

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           DI TYN ++ A    G+++E   V   M      PD IT+N L+D YG+    + + ++ 
Sbjct: 179 DIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGELL 238

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           + +  +   P +  +N +I  YG+A     A  +F++M     TP  +T+  ++  YG  
Sbjct: 239 REMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKH 298

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
                 R +F ++ + G +  V+T N +++ +   G   E+  LF +  + GV PD STY
Sbjct: 299 GCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTY 358

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             L  +  K  + +  +K+ + M Q+ + P    F   +  + ++
Sbjct: 359 AGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNA 403



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 162/331 (48%), Gaps = 10/331 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L++    +G    A  +F  M  +G  PD   YNAL+  +    D+ + + + 
Sbjct: 179 DIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQA-DRHEGVGEL 237

Query: 70  LGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           L      + ME+    P++V YNIL+ A  +A        +FK++ E+   PD+ T++ +
Sbjct: 238 L------REMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTL 291

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++AYGK+G   E+  + + MK    +PD+ T+N LI  +G+   F +   +F  L+    
Sbjct: 292 LEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGV 351

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P + T+  ++ + GK  L   A+ + + M     TP+   +  +IT YG     S A  
Sbjct: 352 EPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATY 411

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
            F+ + + G    + T NA++ A+   GL  EA   +    + G++ D STY  L +A+ 
Sbjct: 412 AFNSMKESGCKPDLETYNALIGAHAGGGLYCEAGSAYLTMIDEGISADVSTYNSLIEAFG 471

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           +  + +   +  + ME+    PN+  + EAL
Sbjct: 472 RGGLFDDAIEFSRDMEEARCSPNRHTY-EAL 501



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 162/340 (47%), Gaps = 12/340 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI   G+ GQ   ++ L + M+     P+   YN +I A      + + L   LG F
Sbjct: 112 FTALINAYGRNGQHEASLHLLARMKREKVTPNLITYNTVINACAKGGLEWEGL---LGLF 168

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+  E  +P+I+TYN LL AC+    V++   +F+ ++E+ + PD  TYN ++D YG+
Sbjct: 169 AQMR-HEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQ 227

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
               + +  +L  M+     PD++ +N+LI++YG+   +    ++FK +  +   P + T
Sbjct: 228 ADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVT 287

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           F++++  YGK     +   +F  M      P   TY  +I ++G       +  +F +L 
Sbjct: 288 FSTLLEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLL 347

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G +  +ST   +L +    GL   A  +  +     VTP +  +  L  AY  A +  
Sbjct: 348 DGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYS 407

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSA 353
                   M+++G  P+       LET+ ++L G+ +G  
Sbjct: 408 EATYAFNSMKESGCKPD-------LETY-NALIGAHAGGG 439



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 147/327 (44%), Gaps = 13/327 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D+  Y+ L+ + G+  +      L  EM  +G  PD   YN LI A+     K +A A
Sbjct: 212 VPDSITYNALVDIYGQADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRA-GKYRAAA 270

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           K     Q+      C P++VT++ LL A  +    D+V  LF ++ E    PD+ TYN +
Sbjct: 271 KMFKQMQEAG----CTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTL 326

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  +G+ G  +E  ++   +     +PD+ T+  L+ S GK       +++ + ++ S  
Sbjct: 327 IQVFGQGGFFQESINLFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYV 386

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG----YCDNVS 243
            PT   F  +I  YG A L  +A Y F  M      P   TY  +I  +     YC+  S
Sbjct: 387 TPTTDGFTGLITAYGNAALYSEATYAFNSMKESGCKPDLETYNALIGAHAGGGLYCEAGS 446

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
               + DE    G    VST N+++EA+   GL  +A     +      +P+  TY+ L 
Sbjct: 447 AYLTMIDE----GISADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPNRHTYEALM 502

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
             Y  A + +  +     ++  G +P+
Sbjct: 503 GVYCTAGLFDEAKAQFLDLQVGGELPS 529



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 138/276 (50%), Gaps = 1/276 (0%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           KAL  F+ M+  + CKPN   Y I++    +   +D+ + LF+++  + +  ++Y++  +
Sbjct: 56  KALRLFKYMQRHQWCKPNEHVYTIMIGIMGREGMLDKASELFEDMPLNDVEWNVYSFTAL 115

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ-AFDKMEQVFKSLMHSK 186
           ++AYG+NG  +    +L+RMK  +  P++IT+N +I++  K    ++ +  +F  + H  
Sbjct: 116 INAYGRNGQHEASLHLLARMKREKVTPNLITYNTVINACAKGGLEWEGLLGLFAQMRHEG 175

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + T+N+++       L  +A  VF+ M      P  ITY  ++ +YG  D      
Sbjct: 176 IQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVG 235

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+  E+ + G    V   N ++EAY   G    A  +F+     G TPD  T+  L +AY
Sbjct: 236 ELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAY 295

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            K    + V+ L   M++ G  P+   +   ++ F 
Sbjct: 296 GKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFG 331



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 119/266 (44%), Gaps = 16/266 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   +S L+   GK G       LF++M+  G  PD + YN LI        +     ++
Sbjct: 284 DVVTFSTLLEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTLI----QVFGQGGFFQES 339

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +  F  +   G+E   P++ TY  LL +C +         + + + +S + P    + G+
Sbjct: 340 INLFWDLLDGGVE---PDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGL 396

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           + AYG   +  E     + MK + CKPD+ T+N LI ++     + +    + +++    
Sbjct: 397 ITAYGNAALYSEATYAFNSMKESGCKPDLETYNALIGAHAGGGLYCEAGSAYLTMIDEGI 456

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
              + T+NS+I  +G+  L   A    + M   + +P+  TYE ++ +  YC        
Sbjct: 457 SADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPNRHTYEALMGV--YC-----TAG 509

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCM 273
           +FDE      D++V      +++YC+
Sbjct: 510 LFDEAKAQFLDLQVGGELPSVDSYCL 535



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 133/330 (40%), Gaps = 41/330 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA------- 55
           K+R    D   Y+ LI V G+ G  + ++ LF ++ + G  PD S Y  L+ +       
Sbjct: 312 KERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTYAGLLYSCGKGGLH 371

Query: 56  ------HLH--------TRDKAKALAKALG----------YFQKMKGMERCKPNIVTYNI 91
                 H H        T D    L  A G           F  MK    CKP++ TYN 
Sbjct: 372 KAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMK-ESGCKPDLETYNA 430

Query: 92  LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151
           L+ A A      +  + +  + +  ++ D+ TYN +++A+G+ G+  +       M+  +
Sbjct: 431 LIGAHAGGGLYCEAGSAYLTMIDEGISADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEAR 490

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
           C P+  T+  L+  Y     FD+ +  F  L    E P++ ++  ++    +      A 
Sbjct: 491 CSPNRHTYEALMGVYCTAGLFDEAKAQFLDLQVGGELPSVDSYCLLLSVCARRNRWDDAS 550

Query: 212 YVFQKMTAMKYTPSFITYECII--TMYGYCD---NVSRAREIFDELSKLGKDMKVSTLNA 266
            V ++M      P+  +   ++   + G  D   N  R    FD L   G    +   NA
Sbjct: 551 KVLEEML----EPNMPSIYGVVGGILKGEMDDGTNWQRVEYAFDGLKVDGVGSNLRFYNA 606

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
           +LEA    G    A  +F  +   GV  ++
Sbjct: 607 LLEALWCLGQRERACRVFAEARKRGVLAEA 636



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 93/229 (40%), Gaps = 43/229 (18%)

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM-HSKEKPTLPTFNSMIIN 200
           S+   M+  + K  I  F+L+   + +R  + K  ++FK +  H   KP    +  MI  
Sbjct: 24  SIAKTMEGYRNKLTINDFSLIFREFAQRSDWQKALRLFKYMQRHQWCKPNEHVYTIMIGI 83

Query: 201 YGKARLQGKAEYVFQKM------------TAM-----------------------KYTPS 225
            G+  +  KA  +F+ M            TA+                       K TP+
Sbjct: 84  MGREGMLDKASELFEDMPLNDVEWNVYSFTALINAYGRNGQHEASLHLLARMKREKVTPN 143

Query: 226 FITYECIITMYGYCDNVSRARE----IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
            ITY  +I     C       E    +F ++   G    + T N +L A    GL  EA 
Sbjct: 144 LITYNTVINA---CAKGGLEWEGLLGLFAQMRHEGIQPDIITYNTLLSACSSRGLVEEAG 200

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           ++F   +  GV PDS TY  L   Y +A+  E V +LL+ MEQ G  P+
Sbjct: 201 MVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGELLREMEQAGNAPD 249


>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 859

 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 165/345 (47%), Gaps = 6/345 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ+Q W   +  IY+ +I ++G++G       +F EM ++G      VY A+I A+    
Sbjct: 126 MQRQIWCKPNEHIYTIMITLLGREGLLDKCREVFDEMPSNGVARTVYVYTAVINAY---- 181

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAP 119
            +      +L     MK  ER  P+I+TYN ++ ACA+   + + +  LF E+    + P
Sbjct: 182 GRNGQFHASLELLNGMK-QERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQP 240

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D+ TYN ++ A    G+  E E V   M  +   PDI T++ L+ ++GK    +K+ ++ 
Sbjct: 241 DVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELL 300

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           + +      P + ++N ++  Y +     +A  VF++M A     +  TY  ++ +YG  
Sbjct: 301 REMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKH 360

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
                 R+IF E+     D    T N +++ +   G   E   LF +     V P+  TY
Sbjct: 361 GRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETY 420

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           + L  A  K  + E  +K+L  M + GIVP+ + +   +E F  +
Sbjct: 421 EGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQA 465



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 154/342 (45%), Gaps = 30/342 (8%)

Query: 33  LFSEMRNSGCRPDPSVYNALI--TAHLHTRDKAKALAKALG----------------YFQ 74
           LF+EMR+ G +PD   YN L+   AH    D+A+ + + +                  F 
Sbjct: 229 LFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFG 288

Query: 75  KMKGMERCK------------PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           K+  +E+              P+I +YN+LL A A+  ++ +   +F+++  +    +  
Sbjct: 289 KLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAA 348

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY+ +++ YGK+G   ++  +   MK +   PD  T+N+LI  +G+   F ++  +F  +
Sbjct: 349 TYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDM 408

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           +    +P + T+  +I   GK  L   A+ +   M      PS   Y  +I  +G     
Sbjct: 409 VEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALY 468

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A  +F+ ++++G +  V T N+ + A+   GL  EA+ +    +  G+  D  ++  +
Sbjct: 469 EEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGV 528

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            KA+ +    E   K    ME+    PN+      L  + S+
Sbjct: 529 IKAFRQGGQYEEAVKSYVEMEKANCEPNELTLEVVLSVYCSA 570



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 150/326 (46%), Gaps = 11/326 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   YS L+   GK  +      L  EM + G  PD + YN L+ A+     +  ++ 
Sbjct: 274 VPDINTYSYLVQTFGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYA----ELGSIK 329

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A+  F++M+    C  N  TY++LL    +    D V  +F E+  S   PD  TYN +
Sbjct: 330 EAMDVFRQMQAA-GCVANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNIL 388

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  +G+ G  KE+ ++   M     +P++ T+  LI + GK   ++  +++   L+H  E
Sbjct: 389 IQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKI---LLHMNE 445

Query: 188 KPTLPT---FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
           K  +P+   +  +I  +G+A L  +A  VF  M  +   P+  TY   I  +        
Sbjct: 446 KGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKE 505

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  I   +++ G    V + N +++A+   G   EA   +         P+  T +++  
Sbjct: 506 AEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELTLEVVLS 565

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
            Y  A + +  ++  + ++ +GI+P+
Sbjct: 566 VYCSAGLVDESEEQFQEIKASGILPS 591



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 127/264 (48%), Gaps = 1/264 (0%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           ++L  F+ M+    CKPN   Y I++    +   +D+   +F E+  + +A  +Y Y  V
Sbjct: 118 RSLRLFKYMQRQIWCKPNEHIYTIMITLLGREGLLDKCREVFDEMPSNGVARTVYVYTAV 177

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA-FDKMEQVFKSLMHSK 186
           ++AYG+NG       +L+ MK  +  P I+T+N +I++  +    ++ +  +F  + H  
Sbjct: 178 INAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEG 237

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + T+N+++       L  +AE VF+ M      P   TY  ++  +G  + + +  
Sbjct: 238 IQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVS 297

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+  E+   G    +++ N +LEAY   G   EA  +F      G   +++TY +L   Y
Sbjct: 298 ELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLY 357

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K    + V+ +   M+ +   P+
Sbjct: 358 GKHGRYDDVRDIFLEMKVSNTDPD 381



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 139/303 (45%), Gaps = 9/303 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKA 65
           + D   Y+ L+    + G  + AM +F +M+ +GC  + + Y+ L+  +  H R D  + 
Sbjct: 309 LPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRD 368

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           +      F +MK +    P+  TYNIL++   +     +V  LF ++ E  + P++ TY 
Sbjct: 369 I------FLEMK-VSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYE 421

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
           G++ A GK G+ ++ + +L  M      P    +  +I+++G+   +++   VF ++   
Sbjct: 422 GLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMNEV 481

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              PT+ T+NS I  + +  L  +AE +  +M          ++  +I  +        A
Sbjct: 482 GSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEA 541

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            + + E+ K   +    TL  +L  YC  GL  E++  F+     G+ P    Y L+   
Sbjct: 542 VKSYVEMEKANCEPNELTLEVVLSVYCSAGLVDESEEQFQEIKASGILPSVMCYCLMLAL 601

Query: 306 YTK 308
           Y K
Sbjct: 602 YAK 604



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 142/341 (41%), Gaps = 21/341 (6%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           +A+   YS L+ + GK G+      +F EM+ S   PD   YN LI              
Sbjct: 344 VANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEG-------- 395

Query: 68  KALGYFQKMKGM------ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
              GYF+++  +      E  +PN+ TY  L+ AC +    +    +   ++E  + P  
Sbjct: 396 ---GYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSS 452

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
             Y GV++A+G+  + +E   V + M      P + T+N  I ++ +   + + E +   
Sbjct: 453 KAYTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSR 512

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           +  S  K  + +FN +I  + +     +A   + +M      P+ +T E ++++Y     
Sbjct: 513 MNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELTLEVVLSVYCSAGL 572

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           V  + E F E+   G    V     ML  Y  N    +A  L +    M V+        
Sbjct: 573 VDESEEQFQEIKASGILPSVMCYCLMLALYAKNDRLNDAYNLIDEMITMRVSDIHQGIGQ 632

Query: 302 LYKA-YTKANMKELVQKLLKRMEQNGIVPNKRFF---LEAL 338
           + K  +   +  ++V+ +  ++   G     RF+   LEAL
Sbjct: 633 MIKGDFDDESNWQIVEYVFDKLNSEGCGLGMRFYNALLEAL 673


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 155/349 (44%), Gaps = 36/349 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH------------L 57
           D   YS LIA + K G+   A  LF +MR + C PD   + AL+               L
Sbjct: 181 DVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVL 240

Query: 58  HTRDKAKALAKALGY-------------------FQKM--KGMERCKPNIVTYNILLRAC 96
            T +        + Y                   F++M  +G+E   PN+VTYN L+   
Sbjct: 241 ETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIE---PNVVTYNSLIHGF 297

Query: 97  AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
                VD    L +E+  +   PDI TYN ++D   K G   E   +   MK+  C PD+
Sbjct: 298 CMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDV 357

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           IT++ LI  + K +  D    +F  ++     P + TF++++  Y  A L   AE + ++
Sbjct: 358 ITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEE 417

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M A   +P   TY  ++  +     +  AR +   ++K G    V T  A+++A+C  G 
Sbjct: 418 MVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGK 477

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
           PT A  L E     GV P+  TY+ L   +      E  +K+L+R+E++
Sbjct: 478 PTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERD 526



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 158/342 (46%), Gaps = 5/342 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   Y  L+A + K G+  +A+ +F +  N  C PD   Y+ LI        K
Sbjct: 139 RERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLC----K 194

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L +A   F+KM+    C+P++VT+  L+    +   + +   + + + +    P++ 
Sbjct: 195 TGRLDEACKLFEKMR-ENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVI 253

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY+ ++D   K G +++ + V  RM     +P+++T+N LI  +      D    + + +
Sbjct: 254 TYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEM 313

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
             +   P + T+N++I    K     +A  +F  M A    P  ITY C+I  +   + +
Sbjct: 314 TATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERI 373

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             AR +FD++ K      V T + ++E YC  GL  +A+ L E       +PD  TY  L
Sbjct: 374 DMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSL 433

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
              + K       +++LKRM + G  PN   +   ++ F  +
Sbjct: 434 VDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRA 475



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 159/352 (45%), Gaps = 20/352 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT--RDKAKALAKALG 71
           YS +I    ++ +   A  LF +M  +GC P+   YN L++        D+A  L   + 
Sbjct: 80  YSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEM- 138

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
              + +G++   P+  +Y+ L+    +   +D    +F++       PD+  Y+ ++   
Sbjct: 139 ---RERGLQ---PDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGL 192

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G + E   +  +M+ N C+PD++TF  L+D   K     + +QV +++      P +
Sbjct: 193 CKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNV 252

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIF 249
            T++S+I    K      A+ VF++M      P+ +TY  +I  +G+C  + V  A  + 
Sbjct: 253 ITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLI--HGFCMTNGVDSALLLM 310

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +E++  G    + T N +++  C  G   EA+ LF +       PD  TY  L   + K 
Sbjct: 311 EEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKL 370

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRSL 361
              ++ + L   M +  ++P+       + TFS+ + G  +     D  R L
Sbjct: 371 ERIDMARTLFDDMLKQAVLPD-------VVTFSTLVEGYCNAGLVDDAERLL 415



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 157/386 (40%), Gaps = 54/386 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLHTRDKAKALAKALG 71
           ++ +I  + K  +   A   F++M+  G  P+   YN LI     +H   +A  L K + 
Sbjct: 10  WTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEM- 68

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
              K  G+    PN+VTY+ ++    +   VD    LF+++ E+   P++ TYN ++   
Sbjct: 69  ---KESGL---APNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL 122

Query: 132 GKNGMIKEMESVLSRMK-----------------------------------SNQCKPDI 156
            +NG++ E   +L  M+                                   +  C PD+
Sbjct: 123 CRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDV 182

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA-RLQGKAEYVFQ 215
           + ++ LI    K    D+  ++F+ +  +  +P + TF +++    K  RLQ +A+ V +
Sbjct: 183 VAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQ-EAQQVLE 241

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            M     TP+ ITY  +I        V  A+E+F  +   G +  V T N+++  +CM  
Sbjct: 242 TMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTN 301

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335
               A LL E     G  PD  TY  L     K        +L   M+     P+   + 
Sbjct: 302 GVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITY- 360

Query: 336 EALETFSSSLAGSQSGSAKTDLTRSL 361
                  S L G      + D+ R+L
Sbjct: 361 -------SCLIGGFCKLERIDMARTL 379



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 114/251 (45%), Gaps = 4/251 (1%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C+ N++T+ I++    +A  + +    F ++ +    P+ +TYN +++ + K   +    
Sbjct: 3   CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAY 62

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
            +L  MK +   P+++T++ +I  + ++   D   ++F+ ++ +   P L T+N+++   
Sbjct: 63  LLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL 122

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDM 259
            +  L  +A  +  +M      P   +Y+ +  M G C    +  A ++F++ S      
Sbjct: 123 CRNGLMDEAYELLDEMRERGLQPDKFSYDTL--MAGLCKTGKIDMALKVFEDNSNGDCPP 180

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            V   + ++   C  G   EA  LFE        PD  T+  L     K +  +  Q++L
Sbjct: 181 DVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVL 240

Query: 320 KRMEQNGIVPN 330
           + ME     PN
Sbjct: 241 ETMEDRNCTPN 251



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 108/247 (43%), Gaps = 7/247 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   +S L+      G    A  L  EM  S C PD   Y +L+        K   + 
Sbjct: 389 LPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFC----KVGRMV 444

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A    ++M     C+PN+VTY  L+ A  +A        L +E+  + + P++ TY  +
Sbjct: 445 EARRVLKRM-AKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSL 503

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +  +   G ++E   +L R++ ++ CK D+  + +++D   +        ++ +++  S 
Sbjct: 504 IGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSG 563

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMT-AMKYTPSFITYECIITMYGYCDNVSRA 245
             P    + ++I    + +  GKA  V ++MT + K  P+   YE +I           A
Sbjct: 564 TPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEA 623

Query: 246 REIFDEL 252
             + DEL
Sbjct: 624 NALADEL 630



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 11/184 (5%)

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP---TFNSMIINYGKARLQ 207
           +C+ ++IT+ ++ID   K     +    F  +   K+K T+P   T+N +I  + K    
Sbjct: 2   ECEKNVITWTIMIDGLCKANRLPEATTYFAKM---KKKGTVPNEWTYNVLINGFCKVHKV 58

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLN 265
            +A  + ++M      P+ +TY  +I  +G+C    V  A ++F ++ + G    + T N
Sbjct: 59  HRAYLLLKEMKESGLAPNVVTYSTVI--HGFCRQTKVDTAYKLFRQMVENGCMPNLVTYN 116

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            +L   C NGL  EA  L +     G+ PD  +Y  L     K    ++  K+ +    N
Sbjct: 117 TLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFED-NSN 175

Query: 326 GIVP 329
           G  P
Sbjct: 176 GDCP 179



 Score = 38.1 bits (87), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 7/128 (5%)

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
           M+   + IT+  +I      + +  A   F ++ K G      T N ++  +C       
Sbjct: 1   MECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHR 60

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
           A LL +     G+ P+  TY  +   + +    +   KL ++M +NG +PN       L 
Sbjct: 61  AYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPN-------LV 113

Query: 340 TFSSSLAG 347
           T+++ L+G
Sbjct: 114 TYNTLLSG 121


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 159/322 (49%), Gaps = 11/322 (3%)

Query: 12  GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           G++  L + + + G    A   F +MR     P P   NAL    LH   K      +  
Sbjct: 186 GVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNAL----LHRLSKVGRGDLSRK 241

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           +F+ M G    K ++ TYNI++    +  +++   +LF ++ E+   PDI TYN ++D +
Sbjct: 242 FFKDM-GAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGH 300

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE---K 188
           GK G++ E   +  +MK   C PD+IT+N LI+ + K   F++M + F+ L   K    K
Sbjct: 301 GKLGLLDECICIFEQMKDADCDPDVITYNALINCFCK---FERMPKAFEFLHEMKANGLK 357

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P + T+++ I  + K  +  +A   F  M  +  TP+  TY  +I       N++ A ++
Sbjct: 358 PNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKL 417

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            +E+ + G  + V T  A+L+  C  G   EA+ +F    N GV P+  TY  L   + K
Sbjct: 418 VEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIK 477

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
           A   E  + +LK M++  I P+
Sbjct: 478 AKEMEYAKDILKEMKEKCIKPD 499



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 154/330 (46%), Gaps = 9/330 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ LI   GK G     + +F +M+++ C PD   YNALI        K
Sbjct: 282 KEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFC----K 337

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            + + KA  +  +MK     KPN+VTY+  + A  +   + +    F ++    L P+ +
Sbjct: 338 FERMPKAFEFLHEMKA-NGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEF 396

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++DA  K G + E   ++  +     K +++T+  L+D   +     + E+VF+++
Sbjct: 397 TYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAM 456

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN- 241
           +++   P   T+ +++  + KA+    A+ + ++M      P  + Y  I  ++G C+  
Sbjct: 457 LNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTI--LWGLCNES 514

Query: 242 -VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            +  A+ +  E+ + G +        +++AY  +G  TEA  L E   ++G+     TY 
Sbjct: 515 RLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYC 574

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            L     K+ + +       RM + G+ PN
Sbjct: 575 ALIDGLCKSGLVQEAMHHFGRMSEIGLQPN 604



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 134/316 (42%), Gaps = 7/316 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + ++G+ + A  +F  M N+G  P+   Y AL+    H   KAK +  A    
Sbjct: 433 YTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALV----HGFIKAKEMEYAKDIL 488

Query: 74  QKMKGMERC-KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           ++MK  E+C KP+++ Y  +L        +++   L  E+ ES +  +   Y  +MDAY 
Sbjct: 489 KEMK--EKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYF 546

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K+G   E  ++L  M         +T+  LID   K     +    F  +     +P + 
Sbjct: 547 KSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVA 606

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            + +++    K      A+ +F +M      P  I Y  +I       N+  A  + D +
Sbjct: 607 VYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRM 666

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            ++G ++ +    A++     +G   +A  L +     GV PD   Y  L K Y      
Sbjct: 667 IEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKV 726

Query: 313 ELVQKLLKRMEQNGIV 328
           +   +L   M + G++
Sbjct: 727 DEALELQNEMAKRGMI 742



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 135/304 (44%), Gaps = 17/304 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS  I    K+G  + A+  F +MR     P+   Y +LI A+     KA  LA+AL   
Sbjct: 363 YSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANC----KAGNLAEALKLV 418

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           +++   G+   K N+VTY  LL    +   + +   +F+ +  + +AP+  TY  ++  +
Sbjct: 419 EEILQAGI---KLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGF 475

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K   ++  + +L  MK    KPD++ +  ++         ++ + +   +  S      
Sbjct: 476 IKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNA 535

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIF 249
             + +++  Y K+    +A  + ++M  +    + +TY  +I   G C +  V  A   F
Sbjct: 536 VIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALID--GLCKSGLVQEAMHHF 593

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             +S++G    V+   A+++  C N     A  LF+   + G+ PD    K+ Y A    
Sbjct: 594 GRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPD----KIAYTALIDG 649

Query: 310 NMKE 313
           NMK 
Sbjct: 650 NMKH 653



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 112/282 (39%), Gaps = 20/282 (7%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL---------------- 112
           AL +F+  KG    +     Y IL+     AR     NA+ KEL                
Sbjct: 115 ALRFFEWAKGRIGFQHTSEAYCILVHILFCARFYSDANAVLKELICLRRVLPSWDVFDLL 174

Query: 113 --HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170
               ++  P    ++ +  A  + GM++E      +M+  +  P   + N L+    K  
Sbjct: 175 WATRNVCVPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVG 234

Query: 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
             D   + FK +  +  K ++ T+N MI    K      A  +F +M    +TP  +TY 
Sbjct: 235 RGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYN 294

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC-MNGLPTEADLLFENSHN 289
            +I  +G    +     IF+++     D  V T NA++  +C    +P   + L E   N
Sbjct: 295 SLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKAN 354

Query: 290 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
            G+ P+  TY     A+ K  M +   K    M +  + PN+
Sbjct: 355 -GLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNE 395



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 9/161 (5%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           IA    Y  LI  + K G  + AM  F  M   G +P+ +VY AL+      ++    +A
Sbjct: 567 IATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDG--LCKNNCFEVA 624

Query: 68  KALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           K L  F +M  KGM    P+ + Y  L+    +  N+ +   L   + E  +  D++ Y 
Sbjct: 625 KKL--FDEMLDKGM---MPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYT 679

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
            ++     +G +++  ++L  M      PD + +  LI  Y
Sbjct: 680 ALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKY 720



 Score = 37.7 bits (86), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           +  +Y+ L+  + K     +A  LF EM + G  PD   Y ALI  ++    K   L +A
Sbjct: 604 NVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNM----KHGNLQEA 659

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           L    +M   GME    ++  Y  L+   + +  V +   L  E+    + PD   Y  +
Sbjct: 660 LNLRDRMIEIGMEL---DLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCL 716

Query: 128 MDAYGKNGMIKE 139
           +  Y   G + E
Sbjct: 717 IKKYYALGKVDE 728


>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
 gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
          Length = 866

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 164/345 (47%), Gaps = 6/345 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ+Q W   +  IY+ +I+++G++G       +F EM   G       Y ALI ++    
Sbjct: 133 MQRQIWCKPNEHIYTIMISLLGREGLLEKCSDIFEEMGAHGVSRSVFSYTALINSY---- 188

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAP 119
            +      +L   ++MK  ER  P+I+TYN ++ +CA+   + + +  LF E+    + P
Sbjct: 189 GRNGKYEVSLELLERMK-KERVSPSILTYNTVINSCARGGLDWEGLLGLFAEMRHEGIQP 247

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           DI TYN ++ A    G+  E E V   M      PDI T+  L+D++GK    DK+ ++ 
Sbjct: 248 DIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVSELL 307

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           K +  +   P + ++N ++  Y +      A  VF+ M      P+  TY  ++ +YG  
Sbjct: 308 KEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYGKH 367

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
                 RE+F E+     +   +T N +++ +   G   E   LF +     V P+  TY
Sbjct: 368 GRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETY 427

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           + L  A  K  + +  +K+L  M + G++P+ + +   +E +  +
Sbjct: 428 EGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYGQA 472



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 146/334 (43%), Gaps = 9/334 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT--AHLHTRDKAKALA 67
           D   Y+ L+     +G    A  +F  M   G  PD + Y  L+     L+  DK   L 
Sbjct: 248 DIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVSELL 307

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           K +     +       P I +YN+LL A A+  N++    +F+ + E+   P+  TY+ +
Sbjct: 308 KEMASTGNV-------PEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSIL 360

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  YGK+G   E+  +   MK +  +PD  T+N LID +G+   F ++  +F  +     
Sbjct: 361 LGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENV 420

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P + T+  +I   GK  L   A+ +   M+     PS   Y  +I  YG       A  
Sbjct: 421 EPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALV 480

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
             + ++++G    + T N ++  +   GL  E + +     + GV  +  ++  + + + 
Sbjct: 481 TLNTMNEMGSKPTIETYNTLIYMFARGGLYKETEAILLKMGDFGVARERDSFNGVIEGFR 540

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           +    E   K    ME++ +VP++R     L  +
Sbjct: 541 QGGQFEEAIKAYVEMEKSRLVPDERTLEAVLSVY 574



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 146/311 (46%), Gaps = 9/311 (2%)

Query: 33  LFSEMRNSGCRPDPSVYNALITA--HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90
           LF+EMR+ G +PD   YN L+ A  +    D+A+ + + +     +       P+I TY 
Sbjct: 236 LFAEMRHEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVV-------PDITTYT 288

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
            L+    +   +D+V+ L KE+  +   P+I +YN +++AY + G I++   V   M+  
Sbjct: 289 YLVDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEA 348

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
            C P+  T+++L+  YGK   +D++ ++F  +  S  +P   T+N++I  +G+     + 
Sbjct: 349 GCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEV 408

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
             +F  M      P+  TYE +I   G       A++I   +S+ G          ++EA
Sbjct: 409 VTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEA 468

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y    +  EA +     + MG  P   TY  L   + +  + +  + +L +M   G+   
Sbjct: 469 YGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGGLYKETEAILLKMGDFGVARE 528

Query: 331 KRFFLEALETF 341
           +  F   +E F
Sbjct: 529 RDSFNGVIEGF 539



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 151/340 (44%), Gaps = 11/340 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ L+   GK  +      L  EM ++G  P+ S YN L+ A+    +    + 
Sbjct: 281 VPDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGN----IE 336

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            A G F+ M+    C PN  TY+ILL    +    D+V  LF E+  S   PD  TYN +
Sbjct: 337 DATGVFRLMQ-EAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTL 395

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D +G+ G  KE+ ++   M     +P++ T+  LI + GK    D  +++   L+H  E
Sbjct: 396 IDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKI---LLHMSE 452

Query: 188 KPTLPT---FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
           K  +P+   +  +I  YG+A +  +A      M  M   P+  TY  +I M+        
Sbjct: 453 KGMIPSSKAYTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGGLYKE 512

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
              I  ++   G   +  + N ++E +   G   EA   +       + PD  T + +  
Sbjct: 513 TEAILLKMGDFGVARERDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDERTLEAVLS 572

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            Y  A + +   +  + ++ +GI+PN   +   L  ++ S
Sbjct: 573 VYCIAGLVDESVEQFQEIKASGILPNVMCYCMMLAVYAKS 612



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 137/276 (49%), Gaps = 1/276 (0%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           ++L  F+ M+    CKPN   Y I++    +   +++ + +F+E+    ++  +++Y  +
Sbjct: 125 RSLRLFKHMQRQIWCKPNEHIYTIMISLLGREGLLEKCSDIFEEMGAHGVSRSVFSYTAL 184

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA-FDKMEQVFKSLMHSK 186
           +++YG+NG  +    +L RMK  +  P I+T+N +I+S  +    ++ +  +F  + H  
Sbjct: 185 INSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINSCARGGLDWEGLLGLFAEMRHEG 244

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + T+N+++       L  +AE VF+ M      P   TY  ++  +G  + + +  
Sbjct: 245 IQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVS 304

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+  E++  G   ++S+ N +LEAY   G   +A  +F      G  P++ TY +L   Y
Sbjct: 305 ELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLY 364

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            K    + V++L   M+ +   P+   +   ++ F 
Sbjct: 365 GKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFG 400



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 114/280 (40%), Gaps = 40/280 (14%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + +   YS L+ + GK G+      LF EM+ S   PD + YN LI        +     
Sbjct: 351 VPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVF----GEGGYFK 406

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           + +  F  M   E  +PN+ TY  L+ AC +    D    +   + E  + P    Y GV
Sbjct: 407 EVVTLFHDM-AEENVEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGV 465

Query: 128 MDAYG-----------------------------------KNGMIKEMESVLSRMKSNQC 152
           ++AYG                                   + G+ KE E++L +M     
Sbjct: 466 IEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGGLYKETEAILLKMGDFGV 525

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
             +  +FN +I+ + +   F++  + +  +  S+  P   T  +++  Y  A L  ++  
Sbjct: 526 ARERDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDERTLEAVLSVYCIAGLVDESVE 585

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            FQ++ A    P+ + Y  ++ +Y   D  + A E+ DE+
Sbjct: 586 QFQEIKASGILPNVMCYCMMLAVYAKSDRWNEAYELLDEM 625


>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
          Length = 577

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 161/317 (50%), Gaps = 3/317 (0%)

Query: 18  IAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMK 77
           + V  + G+   A  L   MR+    PD   +N LI A   +   A  +A  L +  +  
Sbjct: 1   MGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQA 60

Query: 78  GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMI 137
           G+   +P+ +TYN L+ AC+Q  N+D   A+F+E+  S   PD++TYN ++  +G+ G  
Sbjct: 61  GL---RPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKA 117

Query: 138 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 197
           +E E +   +     +PD +T+N L+ ++ K    +++E+V + L+ +  +    T+N+M
Sbjct: 118 QEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTM 177

Query: 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK 257
           I  YGK      A  ++ +M A+  TP  +TY  ++   G  D +S A ++ +E++  G 
Sbjct: 178 IHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGL 237

Query: 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
              + T +A++ AY  +G   +A+  F+     GV PD   Y ++   + +++    +  
Sbjct: 238 KPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMV 297

Query: 318 LLKRMEQNGIVPNKRFF 334
           L + M ++G  P+   +
Sbjct: 298 LYRAMIKDGYKPDDGLY 314



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 138/312 (44%), Gaps = 7/312 (2%)

Query: 14  YSKLIAVMGKKG--QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           ++ LI    K G     +A+ L  E+R +G RPD   YN LI+A      +   L  A+ 
Sbjct: 32  FNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISAC----SQGSNLDDAVA 87

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            F++M   E C+P++ TYN ++    +     +   +FKEL E    PD  TYN ++ A+
Sbjct: 88  VFEEMIASE-CRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAF 146

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G ++ +E V   +     + D IT+N +I  YGK    D    ++  +      P  
Sbjct: 147 AKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDA 206

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+  ++ + GK     +A  V ++M      P+ +T+  +I  Y        A   FD 
Sbjct: 207 VTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDR 266

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G          ML+ +  +    +  +L+      G  PD   Y++L  A  K N 
Sbjct: 267 MVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNE 326

Query: 312 KELVQKLLKRME 323
            + ++ +++ ME
Sbjct: 327 HDEIEGVIQDME 338



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 134/264 (50%), Gaps = 2/264 (0%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNAL--FKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140
           +P++V++N L+ A A++  +    AL    E+ ++ L PD  TYN ++ A  +   + + 
Sbjct: 26  EPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDA 85

Query: 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
            +V   M +++C+PD+ T+N ++  +G+     + E +FK L+    +P   T+NS++  
Sbjct: 86  VAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYA 145

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
           + K     + E V +++    +    ITY  +I MYG    +  A  ++DE+  +G    
Sbjct: 146 FAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPD 205

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
             T   ++++       +EA  + E   + G+ P   T+  L  AY K+  ++  ++   
Sbjct: 206 AVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFD 265

Query: 321 RMEQNGIVPNKRFFLEALETFSSS 344
           RM ++G+ P++  +L  L+ F+ S
Sbjct: 266 RMVESGVKPDRLAYLVMLDVFARS 289



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 113/260 (43%), Gaps = 38/260 (14%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH------------- 56
           D   Y+ +++V G+ G+ + A  +F E+   G +PD   YN+L+ A              
Sbjct: 100 DLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVC 159

Query: 57  ------------------LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
                             +H   K   L  ALG + +M+ +  C P+ VTY +L+ +  +
Sbjct: 160 EELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIG-CTPDAVTYTVLVDSLGK 218

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
              + +   + +E+ ++ L P + T++ ++ AY K+G   + E    RM  +  KPD + 
Sbjct: 219 MDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLA 278

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           + +++D + +     K+  ++++++    KP    +  ++    K     + E V Q M 
Sbjct: 279 YLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDME 338

Query: 219 A------MKYTPSFITYECI 232
           A      +  +   I  ECI
Sbjct: 339 AVFEMNPLVISSILIKAECI 358


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 173/402 (43%), Gaps = 75/402 (18%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L++   K G+   AM +F EMR +GC+P+   +NALI  H +  +      + 
Sbjct: 395 DVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGN----FVEM 450

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH---------------- 113
           +  F+++K  E C P+IVT+N LL    Q     +V+ +FKE+                 
Sbjct: 451 MKVFEEIKICE-CVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLIS 509

Query: 114 -------------------ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
                              ++ + PD+ TYN V+ A  + G+ ++ E VL+ MK  +CKP
Sbjct: 510 AYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKP 569

Query: 155 DIITFNLLIDSYGKRQAFDKM-----------------------------------EQVF 179
           + +T+  L+ +Y   +  ++M                                   E+ F
Sbjct: 570 NELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAF 629

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             L      P + T N+M+  YG+ R+  K   +   +    +TPS  TY  ++ MY   
Sbjct: 630 LELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRT 689

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           ++  ++ +I  E+   G    + + N ++ AYC NG   EA  +F    + G+ PD  TY
Sbjct: 690 EHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITY 749

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
                +Y   +M      ++K M +NG  PN+  +   ++ F
Sbjct: 750 NTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWF 791



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 158/342 (46%), Gaps = 11/342 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI      G+ R A+ +F ++   GCRP    YN ++  +          +K 
Sbjct: 219 DIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVY---GKMGMPWSKI 275

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            G    MK      P++ TYN L+ +C +    ++   +F+E+  +  +PD  TYN ++D
Sbjct: 276 AGLVDSMKS-SGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLD 334

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK+   +E   VL  M+++   P I+T+N LI +Y +    D+  ++   ++    KP
Sbjct: 335 VYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKP 394

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ +++  + K      A  VF++M      P+  T+  +I M+G   N     ++F
Sbjct: 395 DVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVF 454

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +E+        + T N +L  +  NG+ +E   +F+     G  P+  T+  L  AY++ 
Sbjct: 455 EEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRC 514

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSG 351
              +    + +RM   G+ P+       L T+++ LA    G
Sbjct: 515 GFFDQAMAIYRRMLDAGVTPD-------LSTYNAVLAALARG 549



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 162/332 (48%), Gaps = 8/332 (2%)

Query: 14  YSKLIAVMGKKGQ--TRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           Y+ ++ V GK G   +++A  L   M++SG  PD   YN LI++      +     +A  
Sbjct: 258 YNVILNVYGKMGMPWSKIA-GLVDSMKSSGVAPDLYTYNTLISSC----RRGSLYEEAAE 312

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            F++MK      P+ VTYN LL    ++R   +   + KE+  S  AP I TYN ++ AY
Sbjct: 313 VFEEMKAAG-FSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAY 371

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            ++G++ E   + S+M     KPD+ T+  L+  + K    D   +VF+ +  +  +P +
Sbjct: 372 ARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNI 431

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            TFN++I  +G      +   VF+++   +  P  +T+  ++ ++G     S    +F E
Sbjct: 432 CTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKE 491

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G   +  T N ++ AY   G   +A  ++    + GVTPD STY  +  A  +  +
Sbjct: 492 MKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGL 551

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
            E  +K+L  M+     PN+  +   L  +++
Sbjct: 552 WEQSEKVLAEMKDGRCKPNELTYCSLLHAYAN 583



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 151/318 (47%), Gaps = 19/318 (5%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  ++ +   ++ LI+   + G    AM ++  M ++G  PD S YNA++ A       
Sbjct: 493 KRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAA------- 545

Query: 63  AKALAKALGYFQKMKGME-----RCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
              LA+   + Q  K +      RCKPN +TY  LL A A  + V++++AL +E++  I+
Sbjct: 546 ---LARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGII 602

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
            P       ++  Y K+ ++ E E     ++     PDI T N ++  YG+R+   K  +
Sbjct: 603 EPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNE 662

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           +   +  S   P+L T+NS++  Y +     K+E + +++ A    P  I++  +I  + 
Sbjct: 663 ILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVI--FA 720

Query: 238 YCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           YC N  +  A  IF E+   G    V T N  + +Y  + +  EA  + +     G  P+
Sbjct: 721 YCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNGCKPN 780

Query: 296 SSTYKLLYKAYTKANMKE 313
            +TY  L   + K N ++
Sbjct: 781 QNTYNSLIDWFCKLNRRD 798



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 162/333 (48%), Gaps = 14/333 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+   +      A  +F EM+ +G  PD   YNAL+  +  +R   +A+   
Sbjct: 290 DLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAM--- 346

Query: 70  LGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
               + +K ME     P+IVTYN L+ A A+   +D+   L  ++ +  + PD++TY  +
Sbjct: 347 ----EVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTL 402

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  + K G       V   M+   C+P+I TFN LI  +G R  F +M +VF+ +   + 
Sbjct: 403 LSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICEC 462

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P + T+N+++  +G+  +  +   VF++M    + P   T+  +I+ Y  C    +A  
Sbjct: 463 VPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMA 522

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           I+  +   G    +ST NA+L A    GL  +++ +     +    P+  TY  L  AY 
Sbjct: 523 IYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAY- 581

Query: 308 KANMKELVQKLLKRMEQ--NGIVPNKRFFLEAL 338
            AN KE V+++    E+  +GI+  +   L+ L
Sbjct: 582 -ANGKE-VERMSALAEEIYSGIIEPQAVLLKTL 612



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 150/317 (47%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI+   + G    AM L S+M   G +PD   Y  L++      +K      A+  F
Sbjct: 364 YNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGF----EKTGKDDYAMKVF 419

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M+ +  C+PNI T+N L++      N  ++  +F+E+      PDI T+N ++  +G+
Sbjct: 420 EEMR-VAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQ 478

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           NGM  E+  V   MK     P+  TFN LI +Y +   FD+   +++ ++ +   P L T
Sbjct: 479 NGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLST 538

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N+++    +  L  ++E V  +M   +  P+ +TY  ++  Y     V R   + +E+ 
Sbjct: 539 YNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIY 598

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
               + +   L  ++  Y  + L TE +  F      G +PD +T   +   Y +  M  
Sbjct: 599 SGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVS 658

Query: 314 LVQKLLKRMEQNGIVPN 330
              ++L  ++ +G  P+
Sbjct: 659 KTNEILNFIKDSGFTPS 675



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 1/225 (0%)

Query: 107 ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
           +L  +L    +  DIY Y  ++ AY  NG  +E   V  +++   C+P +IT+N++++ Y
Sbjct: 206 SLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVY 265

Query: 167 GKR-QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
           GK    + K+  +  S+  S   P L T+N++I +  +  L  +A  VF++M A  ++P 
Sbjct: 266 GKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPD 325

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
            +TY  ++ +YG       A E+  E+   G    + T N+++ AY  +GL  EA  L  
Sbjct: 326 KVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKS 385

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                G+ PD  TY  L   + K    +   K+ + M   G  PN
Sbjct: 386 QMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPN 430


>gi|297820044|ref|XP_002877905.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323743|gb|EFH54164.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 439

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 162/344 (47%), Gaps = 16/344 (4%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           ++KQ WY      Y+KL  V+G   Q   A  LF  M + G +P   VY +LI  +    
Sbjct: 84  LRKQHWYEPKCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLIAVY---- 139

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K++ L KA    + MK +  CKP++ T+ +L+R C +    D V  +  E+    +   
Sbjct: 140 GKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLIRCCCKLGRFDLVKRIILEMSYLGVGCS 199

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             TYN ++D YGK GM +EME+VL+ M +     PD+ T N +I S          E V 
Sbjct: 200 TVTYNTIIDGYGKAGMFEEMENVLADMIEDGDSLPDVFTLNSIIGSS---------EMVA 250

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
                  E P + TFN +I+++GKA +  K   V   M    ++ + +TY  +I  +G  
Sbjct: 251 HE--EDGELPDITTFNILILSFGKAGMYKKMSSVMDFMEKRFFSLTTVTYNIVIETFGKA 308

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             + +  ++F ++   G      +  +++ AY   GL  + D +     N  V  D+  +
Sbjct: 309 GKIEKMDDVFRKMKYQGVKPNSISYCSLVNAYSKAGLVGKIDSILRQIVNSDVVLDTPFF 368

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
             +  AY +A     +++L  +ME+    P+K  F   ++T+ +
Sbjct: 369 NCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYKA 412



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 100/189 (52%), Gaps = 11/189 (5%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+I T+NIL+ +  +A    +++++   + +   +    TYN V++ +GK G I++M+ V
Sbjct: 258 PDITTFNILILSFGKAGMYKKMSSVMDFMEKRFFSLTTVTYNIVIETFGKAGKIEKMDDV 317

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
             +MK    KP+ I++  L+++Y K     K++ + + +++S      P FN +I  YG+
Sbjct: 318 FRKMKYQGVKPNSISYCSLVNAYSKAGLVGKIDSILRQIVNSDVVLDTPFFNCIINAYGQ 377

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A      + ++ +M   K  P  IT+  +I  Y       +A  IFD + +L K M +ST
Sbjct: 378 AGDLATMKELYIQMEERKCKPDKITFATMIKTY-------KAHGIFDAVQELEKQM-IST 429

Query: 264 ---LNAMLE 269
              L+ +LE
Sbjct: 430 GENLDILLE 438



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 91/180 (50%), Gaps = 5/180 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   ++ LI   GK G  +    +   M           YN +I     T  KA  + 
Sbjct: 257 LPDITTFNILILSFGKAGMYKKMSSVMDFMEKRFFSLTTVTYNIVI----ETFGKAGKIE 312

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           K    F+KMK  +  KPN ++Y  L+ A ++A  V +++++ +++  S +  D   +N +
Sbjct: 313 KMDDVFRKMK-YQGVKPNSISYCSLVNAYSKAGLVGKIDSILRQIVNSDVVLDTPFFNCI 371

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++AYG+ G +  M+ +  +M+  +CKPD ITF  +I +Y     FD ++++ K ++ + E
Sbjct: 372 INAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYKAHGIFDAVQELEKQMISTGE 431



 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 5/167 (2%)

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P   T+  +    G  +   +A  +F+ M +    P+   Y  +I +YG  + + +A  
Sbjct: 91  EPKCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLIAVYGKSELLDKAFS 150

Query: 248 IFDELSKLGKDMK--VSTLNAMLEAYCMNG-LPTEADLLFENSHNMGVTPDSSTYKLLYK 304
             + +  +  D K  V T   ++   C  G       ++ E S+ +GV   + TY  +  
Sbjct: 151 TLEYMKSVS-DCKPDVFTFTVLIRCCCKLGRFDLVKRIILEMSY-LGVGCSTVTYNTIID 208

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSG 351
            Y KA M E ++ +L  M ++G      F L ++   S  +A  + G
Sbjct: 209 GYGKAGMFEEMENVLADMIEDGDSLPDVFTLNSIIGSSEMVAHEEDG 255


>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 167/345 (48%), Gaps = 6/345 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ+Q W   +  IY+ +I+++G++G       +F EM + G       Y ALI A+    
Sbjct: 138 MQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAY---- 193

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAP 119
            +      +L   ++MK  ER  PNI+TYN ++ ACA+   + + +  LF E+    + P
Sbjct: 194 GRNGQYETSLELLERMK-RERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQP 252

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D+ TYN ++ A    G+  E E V   M      P+I T++ +++++GK    +K+  + 
Sbjct: 253 DLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLL 312

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           K +      P + ++N +I  + K     +A  VF++M A    P+  TY  ++ +YG  
Sbjct: 313 KEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKH 372

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
                 RE+F ++ +   +   +T N ++  +   G   E   LF +  +  + P+  TY
Sbjct: 373 GRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETY 432

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           + L  A  K  + E  +K+L  M   GIVP+ + +   +E +  +
Sbjct: 433 EGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQA 477



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 161/366 (43%), Gaps = 39/366 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI   G+ GQ   ++ L   M+     P+   YN +I A        + L   LG F
Sbjct: 186 YTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGL---LGLF 242

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+  E  +P++VTYN LL ACA     D+   +FK + E  + P+I TY+ +++ +GK
Sbjct: 243 AEMR-HEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGK 301

Query: 134 NG-------MIKEMES----------------------------VLSRMKSNQCKPDIIT 158
            G       ++KEMES                            V  +M++  C P+  T
Sbjct: 302 LGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNAST 361

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +++L++ YGK   +D + ++F  +  S  +P   T+N +I  +G+     +   +F  + 
Sbjct: 362 YSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLV 421

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
                P+  TYE ++   G       A++I   ++  G        + ++EAY    L  
Sbjct: 422 DENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYD 481

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           EA + F   + +G      TY  L   + +  + +  + +L RM + GI  N + F   +
Sbjct: 482 EALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGII 541

Query: 339 ETFSSS 344
           E +  S
Sbjct: 542 EGYRQS 547



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 148/318 (46%), Gaps = 9/318 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAK 64
           Y+ D   Y+ LI    K G  + AM +F +M+ +GC P+ S Y+ L+  +  H R D  +
Sbjct: 320 YLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVR 379

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            L      F +MK     +P+  TYNIL+R   +     +V  LF +L +  + P++ TY
Sbjct: 380 EL------FLQMK-ESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETY 432

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
            G++ A GK G+ ++ + +L  M      P    ++ LI++YG+   +D+    F ++  
Sbjct: 433 EGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNE 492

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
              K T+ T+NS+I  + +  L  + E +  +M     + +  ++  II  Y        
Sbjct: 493 VGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEE 552

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A + F E+ K+  ++   TL  +L  YC  GL  E+   F      G+ P    Y ++  
Sbjct: 553 AIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCMMLA 612

Query: 305 AYTKANMKELVQKLLKRM 322
            Y K    +   +LL  M
Sbjct: 613 VYAKNGRWDDASELLDEM 630



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 147/322 (45%), Gaps = 30/322 (9%)

Query: 33  LFSEMRNSGCRPDPSVYNALITA--HLHTRDKAKALAKAL----------------GYFQ 74
           LF+EMR+ G +PD   YN L++A       D+A+ + K +                  F 
Sbjct: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFG 300

Query: 75  KMKGMERCK------------PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           K+  +E+              P+I +YN+L+ A A+  ++ +   +FK++  +   P+  
Sbjct: 301 KLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNAS 360

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY+ +++ YGK+G   ++  +  +MK +  +PD  T+N+LI  +G+   F ++  +F  L
Sbjct: 361 TYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           +     P + T+  ++   GK  L   A+ +   M      PS   Y  +I  YG     
Sbjct: 421 VDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALY 480

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A   F+ ++++G    + T N+++  +   GL  E + +       G++ ++ ++  +
Sbjct: 481 DEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGI 540

Query: 303 YKAYTKANMKELVQKLLKRMEQ 324
            + Y ++   E   K    ME+
Sbjct: 541 IEGYRQSGQYEEAIKAFVEMEK 562



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 132/264 (50%), Gaps = 1/264 (0%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           ++L  F+ M+    CKPN   Y I++    +   +++ + +F E+    +   +++Y  +
Sbjct: 130 RSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTAL 189

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA-FDKMEQVFKSLMHSK 186
           ++AYG+NG  +    +L RMK  +  P+I+T+N +I++  +    ++ +  +F  + H  
Sbjct: 190 INAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEG 249

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P L T+N+++       L  +AE VF+ M      P   TY  I+  +G    + +  
Sbjct: 250 VQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVA 309

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G    +S+ N ++EA+   G   EA  +F+     G  P++STY +L   Y
Sbjct: 310 MLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLY 369

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K    + V++L  +M+++   P+
Sbjct: 370 GKHGRYDDVRELFLQMKESSAEPD 393



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 119/263 (45%), Gaps = 17/263 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA----HLHTRDKAKA 65
           D   Y+ LI V G+ G  +  + LF ++ +    P+   Y  L+ A     LH       
Sbjct: 393 DATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHED----- 447

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
            AK + +    KG+    P+   Y+ L+ A  QA   D+    F  ++E      I TYN
Sbjct: 448 -AKKILFHMNGKGI---VPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYN 503

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++  + + G+ KE E++LSRM+      +  +F+ +I+ Y +   +++  + F  +   
Sbjct: 504 SLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKM 563

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
           + +    T   ++  Y  A L  +++  F ++ A    PS + Y  ++ +Y        A
Sbjct: 564 RCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCMMLAVYAKNGRWDDA 623

Query: 246 REIFDELSKLGKDMKVSTLNAML 268
            E+ DE+ K     +VS+++ ++
Sbjct: 624 SELLDEMIK----TRVSSIHQVI 642


>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 167/345 (48%), Gaps = 6/345 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ+Q W   +  IY+ +I+++G++G       +F EM + G       Y ALI A+    
Sbjct: 138 MQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAY---- 193

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAP 119
            +      +L   ++MK  ER  PNI+TYN ++ ACA+   + + +  LF E+    + P
Sbjct: 194 GRNGQYETSLELLERMK-RERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQP 252

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D+ TYN ++ A    G+  E E V   M      P+I T++ +++++GK    +K+  + 
Sbjct: 253 DLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLL 312

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           K +      P + ++N +I  + K     +A  VF++M A    P+  TY  ++ +YG  
Sbjct: 313 KEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKH 372

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
                 RE+F ++ +   +   +T N ++  +   G   E   LF +  +  + P+  TY
Sbjct: 373 GRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETY 432

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           + L  A  K  + E  +K+L  M   GIVP+ + +   +E +  +
Sbjct: 433 EGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQA 477



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 161/366 (43%), Gaps = 39/366 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI   G+ GQ   ++ L   M+     P+   YN +I A        + L   LG F
Sbjct: 186 YTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGL---LGLF 242

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+  E  +P++VTYN LL ACA     D+   +FK + E  + P+I TY+ +++ +GK
Sbjct: 243 AEMR-HEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGK 301

Query: 134 NG-------MIKEMES----------------------------VLSRMKSNQCKPDIIT 158
            G       ++KEMES                            V  +M++  C P+  T
Sbjct: 302 LGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNAST 361

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +++L++ YGK   +D + ++F  +  S  +P   T+N +I  +G+     +   +F  + 
Sbjct: 362 YSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLV 421

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
                P+  TYE ++   G       A++I   ++  G        + ++EAY    L  
Sbjct: 422 DENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYD 481

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           EA + F   + +G      TY  L   + +  + +  + +L RM + GI  N + F   +
Sbjct: 482 EALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGII 541

Query: 339 ETFSSS 344
           E +  S
Sbjct: 542 EGYRQS 547



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 148/318 (46%), Gaps = 9/318 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAK 64
           Y+ D   Y+ LI    K G  + AM +F +M+ +GC P+ S Y+ L+  +  H R D  +
Sbjct: 320 YLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVR 379

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            L      F +MK     +P+  TYNIL+R   +     +V  LF +L +  + P++ TY
Sbjct: 380 EL------FLQMK-ESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETY 432

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
            G++ A GK G+ ++ + +L  M      P    ++ LI++YG+   +D+    F ++  
Sbjct: 433 EGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNE 492

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
              K T+ T+NS+I  + +  L  + E +  +M     + +  ++  II  Y        
Sbjct: 493 VGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEE 552

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A + F E+ K+  ++   TL  +L  YC  GL  E+   F      G+ P    Y ++  
Sbjct: 553 AIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCMMLA 612

Query: 305 AYTKANMKELVQKLLKRM 322
            Y K    +   +LL  M
Sbjct: 613 VYAKNGRWDDASELLDEM 630



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 147/322 (45%), Gaps = 30/322 (9%)

Query: 33  LFSEMRNSGCRPDPSVYNALITA--HLHTRDKAKALAKAL----------------GYFQ 74
           LF+EMR+ G +PD   YN L++A       D+A+ + K +                  F 
Sbjct: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFG 300

Query: 75  KMKGMERCK------------PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           K+  +E+              P+I +YN+L+ A A+  ++ +   +FK++  +   P+  
Sbjct: 301 KLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNAS 360

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY+ +++ YGK+G   ++  +  +MK +  +PD  T+N+LI  +G+   F ++  +F  L
Sbjct: 361 TYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDL 420

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           +     P + T+  ++   GK  L   A+ +   M      PS   Y  +I  YG     
Sbjct: 421 VDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALY 480

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A   F+ ++++G    + T N+++  +   GL  E + +       G++ ++ ++  +
Sbjct: 481 DEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGI 540

Query: 303 YKAYTKANMKELVQKLLKRMEQ 324
            + Y ++   E   K    ME+
Sbjct: 541 IEGYRQSGQYEEAIKAFVEMEK 562



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 132/264 (50%), Gaps = 1/264 (0%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           ++L  F+ M+    CKPN   Y I++    +   +++ + +F E+    +   +++Y  +
Sbjct: 130 RSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTAL 189

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA-FDKMEQVFKSLMHSK 186
           ++AYG+NG  +    +L RMK  +  P+I+T+N +I++  +    ++ +  +F  + H  
Sbjct: 190 INAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEG 249

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P L T+N+++       L  +AE VF+ M      P   TY  I+  +G    + +  
Sbjct: 250 VQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVA 309

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G    +S+ N ++EA+   G   EA  +F+     G  P++STY +L   Y
Sbjct: 310 MLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLY 369

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K    + V++L  +M+++   P+
Sbjct: 370 GKHGRYDDVRELFLQMKESSAEPD 393



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 119/263 (45%), Gaps = 17/263 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA----HLHTRDKAKA 65
           D   Y+ LI V G+ G  +  + LF ++ +    P+   Y  L+ A     LH       
Sbjct: 393 DATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHED----- 447

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
            AK + +    KG+    P+   Y+ L+ A  QA   D+    F  ++E      I TYN
Sbjct: 448 -AKKILFHMNGKGI---VPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYN 503

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++  + + G+ KE E++LSRM+      +  +F+ +I+ Y +   +++  + F  +   
Sbjct: 504 SLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKM 563

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
           + +    T   ++  Y  A L  +++  F ++ A    PS + Y  ++ +Y        A
Sbjct: 564 RCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCMMLAVYAKNGRWDDA 623

Query: 246 REIFDELSKLGKDMKVSTLNAML 268
            E+ DE+ K     +VS+++ ++
Sbjct: 624 SELLDEMIK----TRVSSIHQVI 642


>gi|168045490|ref|XP_001775210.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673423|gb|EDQ59946.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 404

 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 159/341 (46%), Gaps = 16/341 (4%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           +KQ WY  ++ +Y++LI  +G++G+   A  LF EM    C+ D   Y AL+ A+     
Sbjct: 37  KKQSWYCPNSRLYTRLIGFLGREGRVHNATLLFQEMLLEKCQADQYTYTALVNAY----G 92

Query: 62  KAKALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELH------ 113
           KAK   +AL  F  MK      C+PN VT N L+ A  +    DQ   +F ++       
Sbjct: 93  KAKMFEEALAVFSHMKESNEPNCQPNTVTCNALIDALVKGGLYDQAIQVFFDMRDGTNGL 152

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ----CKPDIITFNLLIDSYGKR 169
           E    P++ TYN ++DA  K G++     VL  M+        +P+  T+N LI++ GK 
Sbjct: 153 EHGCEPNVITYNVLIDALCKEGLLDIGMKVLQYMRDGNTDQSVQPNSATYNTLINACGKG 212

Query: 170 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
             ++K E++   ++    +P   T+ ++I  YGKA L   AE  F+ M     +   + Y
Sbjct: 213 GLYEKAEELVDLMVEHGVQPDHITYTALIDAYGKAGLWENAENTFKGMKGTNVSVDVMAY 272

Query: 230 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289
             +I  YG      +A E+F  +   G      T  +++EAY   GLP E+  +F     
Sbjct: 273 TAMIDAYGREGLYQKAEEMFKMMQHSGLRPNQVTYLSLMEAYGKAGLPEESRNVFNIMRE 332

Query: 290 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            G   +   Y  L  AY KA       ++L  M + G  PN
Sbjct: 333 SGYEGNVLIYSSLIDAYGKAGNYLEAARMLDMMRRAGCQPN 373



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 129/274 (47%), Gaps = 7/274 (2%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNS------GCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           LI  + K G    A+ +F +MR+       GC P+   YN LI A L          K L
Sbjct: 125 LIDALVKGGLYDQAIQVFFDMRDGTNGLEHGCEPNVITYNVLIDA-LCKEGLLDIGMKVL 183

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
            Y +     +  +PN  TYN L+ AC +    ++   L   + E  + PD  TY  ++DA
Sbjct: 184 QYMRDGNTDQSVQPNSATYNTLINACGKGGLYEKAEELVDLMVEHGVQPDHITYTALIDA 243

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           YGK G+ +  E+    MK      D++ +  +ID+YG+   + K E++FK + HS  +P 
Sbjct: 244 YGKAGLWENAENTFKGMKGTNVSVDVMAYTAMIDAYGREGLYQKAEEMFKMMQHSGLRPN 303

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             T+ S++  YGKA L  ++  VF  M    Y  + + Y  +I  YG   N   A  + D
Sbjct: 304 QVTYLSLMEAYGKAGLPEESRNVFNIMRESGYEGNVLIYSSLIDAYGKAGNYLEAARMLD 363

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 284
            + + G    + T +A+L + C +    EA +L 
Sbjct: 364 MMRRAGCQPNLITYSAILSSCCKSNCWVEAQVLL 397


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 162/361 (44%), Gaps = 44/361 (12%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D  +Y+  I  +   G+++ A     EM+++G +PD   YN +I A       AKAL 
Sbjct: 556 LPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKAL- 614

Query: 68  KALGYFQKMKGMER--CKPNIVTYNIL--------------------------------- 92
                 + + GM+R   KPN++TY+ L                                 
Sbjct: 615 ------KLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHR 668

Query: 93  --LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
             L+AC+Q R  D +  + + +  + L  DI  YN ++     NGM ++   VL  M   
Sbjct: 669 RVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGR 728

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
              PD ITFN LI  + K    D     +  +++    P + TFN+++     A   G++
Sbjct: 729 GIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGES 788

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
           + V  +M      PS +TY+ ++T YG   N   A  ++ E+   G   KVST NA++  
Sbjct: 789 DMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISD 848

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +   G+ ++A  LF    N GV P S TY +L   ++K      V+K LK M++ G  P+
Sbjct: 849 FSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSPS 908

Query: 331 K 331
           K
Sbjct: 909 K 909



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 145/322 (45%), Gaps = 14/322 (4%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CKPNIVT 88
           A+ ++ EM   G   +  + ++L+        K   + KA   F++M   ER    + V 
Sbjct: 473 ALDVYHEMLCEGVEVNKFIVDSLVNG----LKKNGKIEKAEALFREMN--ERGVLLDHVN 526

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y  L+    +  N+     + +EL E  L PD   YN  ++     G  KE ES L  M+
Sbjct: 527 YTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQ 586

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           S   KPD +T+N +I +  +     K  ++   +  S  KP L T++++I+   +A    
Sbjct: 587 STGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVE 646

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           KA+Y+  +M++  ++P+ +T+  ++             EI + +   G    ++  N ++
Sbjct: 647 KAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLV 706

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
              C NG+  +A ++ E     G+ PD+ T+  L   + K+   +       +M  +GI 
Sbjct: 707 RVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGIS 766

Query: 329 PNKRFFLEALETFSSSLAGSQS 350
           PN       + TF++ L G +S
Sbjct: 767 PN-------VATFNTLLGGLES 781



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 136/317 (42%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+  I    ++     A  L+ EM   G  PD    +AL+        K    ++A   F
Sbjct: 247 YTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLC----KDGRFSEAYALF 302

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M+ +    PN VTY +L+   A+A+  ++  +L  E+    +  D+  Y  +MD   K
Sbjct: 303 REMEKIG-AAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCK 361

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G I E + +     S+   P+ +T+ +LID+  K    D  EQV   +      P + T
Sbjct: 362 EGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVT 421

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           F+S+I    K    GKA    ++M      P+ +TY  +I     C     A +++ E+ 
Sbjct: 422 FSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEML 481

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G ++    +++++     NG   +A+ LF   +  GV  D   Y  L     K     
Sbjct: 482 CEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLP 541

Query: 314 LVQKLLKRMEQNGIVPN 330
              K+ + + +  ++P+
Sbjct: 542 AAFKVGQELTEKNLLPD 558



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 141/317 (44%), Gaps = 14/317 (4%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALGYFQKMKGMERCKPNIVTYN 90
           L +EM   G   D    N ++         D+A ALA+ +     + G++     +V +N
Sbjct: 124 LLAEMCKRGVPFDAVTVNTVLVGLCRDGRVDRAAALAEVMVRGGGIGGLD-----VVGWN 178

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
            L+    +  +++   A+ + +    +  D+  YN ++    + G +     ++  MK +
Sbjct: 179 SLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRD 238

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
             +P+++T+ + I  Y +R A D    +++ ++     P + T ++++    K     +A
Sbjct: 239 GVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEA 298

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
             +F++M  +   P+ +TY  +I         + +  +  E+   G  M +    A+++ 
Sbjct: 299 YALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDW 358

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            C  G   EA  +F ++ +   TP+  TY +L  A  KA   +  +++L  ME+  I PN
Sbjct: 359 LCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPN 418

Query: 331 KRFFLEALETFSSSLAG 347
                  + TFSS + G
Sbjct: 419 -------VVTFSSIING 428



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 129/261 (49%), Gaps = 5/261 (1%)

Query: 26  QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85
           ++ L + +   M N+G   D +VYN L+    +     KA+       ++M G     P+
Sbjct: 679 RSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMV----VLEEMSG-RGIAPD 733

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
            +T+N L+    ++ ++D   + + ++    ++P++ T+N ++      G I E + VL+
Sbjct: 734 TITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLN 793

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
            MK    +P  +T+++L+  YGK+    +  +++  ++     P + T+N++I ++ K  
Sbjct: 794 EMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVG 853

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
           +  +A+ +F +M      P+  TY+ +++ +    N +  R+   ++ + G      TL+
Sbjct: 854 MMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSPSKGTLS 913

Query: 266 AMLEAYCMNGLPTEADLLFEN 286
           ++  A+   G+  EA  L +N
Sbjct: 914 SISRAFSKPGMSWEARRLLKN 934



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 104/247 (42%), Gaps = 5/247 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD  +Y+ L+ V+   G TR AM +  EM   G  PD   +NALI  H     K+  L  
Sbjct: 697 ADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHF----KSGHLDN 752

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A   + +M       PN+ T+N LL     A  + + + +  E+ +  + P   TY+ ++
Sbjct: 753 AFSTYDQML-YHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILV 811

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
             YGK     E   +   M      P + T+N LI  + K     + +++F  + +    
Sbjct: 812 TGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVL 871

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           PT  T++ ++  + K R   +     + M    ++PS  T   I   +        AR +
Sbjct: 872 PTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSPSKGTLSSISRAFSKPGMSWEARRL 931

Query: 249 FDELSKL 255
              L K+
Sbjct: 932 LKNLYKV 938



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/327 (20%), Positives = 136/327 (41%), Gaps = 10/327 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALG 71
           ++ L+    K G    A  +   M+  G   D   YN+L+         D A+ +   + 
Sbjct: 177 WNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTM- 235

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
              K  G+E   PN+VTY + +    +   VD   +L++E+    + PD+ T + ++   
Sbjct: 236 ---KRDGVE---PNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGL 289

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K+G   E  ++   M+     P+ +T+ +LID+  K Q  ++   +   ++       L
Sbjct: 290 CKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDL 349

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             + +++    K     +A+ +F+   +  +TP+ +TY  +I       NV  A ++  E
Sbjct: 350 IMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSE 409

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + +      V T ++++      G   +A          G+ P+  TY  +     K   
Sbjct: 410 MEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLG 469

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEAL 338
           +E    +   M   G+  NK F +++L
Sbjct: 470 QEAALDVYHEMLCEGVEVNK-FIVDSL 495



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 3/233 (1%)

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D  +YN VM  + + G +   E++L+ M       D +T N ++    +    D+   + 
Sbjct: 102 DTVSYNVVMSGFSEQGGLAP-EALLAEMCKRGVPFDAVTVNTVLVGLCRDGRVDRAAALA 160

Query: 180 KSLMHSKEKPTLPT--FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           + ++       L    +NS++  Y K      A  V ++M A       + Y  ++    
Sbjct: 161 EVMVRGGGIGGLDVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLC 220

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
               V  AR++ D + + G +  V T    +  YC      +A  L+E     GV PD  
Sbjct: 221 RAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVV 280

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
           T   L     K         L + ME+ G  PN   +   ++T + +  G++S
Sbjct: 281 TLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNES 333


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 165/392 (42%), Gaps = 75/392 (19%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L++   K G+ + A+ +F EMRN GC+P+   +NALI  H   R K   + K 
Sbjct: 375 DVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMH-GNRGKFTEMMKV 433

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQ------------------------------- 98
              F+ +K  + C P+IVT+N LL    Q                               
Sbjct: 434 ---FEDIKTFQ-CSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLIS 489

Query: 99  ----ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
                 + DQ  A++K + E+ + PD+ +YN V+ A  + G+ K+ E VL+ MK  +CKP
Sbjct: 490 SYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKP 549

Query: 155 DIITFNLLIDSYGKRQAFDKM-----------------------------------EQVF 179
           + +T+  L+ +Y   +  ++M                                   E+ F
Sbjct: 550 NELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAF 609

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             L      P + T N+M+  YG+ ++  KA  +   M    +TPS  TY  ++ MY   
Sbjct: 610 LELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRS 669

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            N  R+ EI  E+   G    + + N ++ AYC NG   +A  +       G  PD  TY
Sbjct: 670 ANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITY 729

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
                +Y   +M      ++  M ++G  PN+
Sbjct: 730 NTFIASYAADSMFVEAIDVVCYMIKHGCKPNQ 761



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 158/345 (45%), Gaps = 11/345 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           +  D   Y+ +I      G+ R A+ +F +M   GC+P    YN ++  +          
Sbjct: 196 FDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKM---GMPW 252

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            K +G   +MK      P+  TYN L+  C +    ++   + KE+  +  +PD  TYN 
Sbjct: 253 NKMVGLVDRMKSAG-IAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNA 311

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++D YGK+   KE   VL  M+ N C P I+T+N LI +Y +    +   ++   ++   
Sbjct: 312 LLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKG 371

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            KP + T+ +++  + KA     A  +F++M      P+  T+  +I M+G     +   
Sbjct: 372 IKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMM 431

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           ++F+++        + T N +L  +  NG+ +E   +F+     G  P+  T+  L  +Y
Sbjct: 432 KVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSY 491

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSG 351
           ++    +    + KRM + G+ P+       L ++++ LA    G
Sbjct: 492 SRCGSFDQAMAVYKRMLEAGVNPD-------LSSYNAVLAALARG 529



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 168/331 (50%), Gaps = 10/331 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D+  Y+ LI+   +      A  +  EM+ +G  PD   YNAL+  +     K++   +A
Sbjct: 270 DSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVY----GKSRRSKEA 325

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +   Q+M+G   C P+IVTYN L+ A A+   ++    L  ++ E  + PD++TY  ++ 
Sbjct: 326 MEVLQEMEG-NGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLS 384

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            + K G  K    +   M++  CKP+I TFN LI  +G R  F +M +VF+ +   +  P
Sbjct: 385 GFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSP 444

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+N+++  +G+  +  +   VF++M    + P   T+  +I+ Y  C +  +A  ++
Sbjct: 445 DIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVY 504

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             + + G +  +S+ NA+L A    GL  +++ +     +    P+  TY  L  AY  A
Sbjct: 505 KRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAY--A 562

Query: 310 NMKELVQKLLKRMEQ--NGIVPNKRFFLEAL 338
           N KE ++++    E+  +GI+  +   L+ L
Sbjct: 563 NGKE-IERMCALAEEIYSGIIEPRAVLLKTL 592



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 161/342 (47%), Gaps = 6/342 (1%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           +K+   + +  I + +I+++GK G+   A  L   +   G   D   Y ++ITA      
Sbjct: 156 RKESELLLNGSIIAVIISILGKGGRVSAAASLLHNLCKDGFDVDVYAYTSMITAFTSN-- 213

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHESILAPD 120
                 +A+  F+KM+ +  CKP ++TYN++L    +     +++  L   +  + +APD
Sbjct: 214 --GRYREAVMVFKKMEEVG-CKPTLITYNVILNVYGKMGMPWNKMVGLVDRMKSAGIAPD 270

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            YTYN ++    +  + +E   VL  MK     PD +T+N L+D YGK +   +  +V +
Sbjct: 271 SYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQ 330

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +  +   P++ T+NS+I  Y +  L   A  +  +M      P   TY  +++ +    
Sbjct: 331 EMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAG 390

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
               A +IF+E+   G    + T NA+++ +   G  TE   +FE+      +PD  T+ 
Sbjct: 391 KDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWN 450

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            L   + +  M   V  + K M++ G VP +  F   + ++S
Sbjct: 451 TLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYS 492



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 146/313 (46%), Gaps = 9/313 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  ++ +   ++ LI+   + G    AM ++  M  +G  PD S YNA++ A L     
Sbjct: 473 KRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAA-LARGGL 531

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   K L    +MK   RCKPN +TY  LL A A  + ++++ AL +E++  I+ P   
Sbjct: 532 WKQSEKVLA---EMKD-GRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAV 587

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
               ++    K  ++ E E     ++     PDI T N ++  YG+RQ   K  ++   +
Sbjct: 588 LLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCM 647

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN- 241
                 P+L T+NS++  Y ++    ++E + +++ A    P  I+Y  +I  Y YC N 
Sbjct: 648 KRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVI--YAYCRNG 705

Query: 242 -VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            +  A  +  E+ + G    + T N  + +Y  + +  EA  +       G  P+ STY 
Sbjct: 706 RMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYN 765

Query: 301 LLYKAYTKANMKE 313
            +   Y K N ++
Sbjct: 766 SIVDWYCKLNRRD 778



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 88/180 (48%), Gaps = 5/180 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR +  D    + ++++ G++     A  +   M+  G  P  + YN+L+  ++++R  
Sbjct: 613 RQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLM--YMYSRSA 670

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
               ++ +      KG+   +P+I++YN ++ A  +   +   + +  E+ ES  APDI 
Sbjct: 671 NFERSEEILREILAKGI---RPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDII 727

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN  + +Y  + M  E   V+  M  + CKP+  T+N ++D Y K    D+      +L
Sbjct: 728 TYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEASMFVNNL 787


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 159/323 (49%), Gaps = 5/323 (1%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           ++ +G++  L +V  + G    A   FS MRN    P     N L    LH   K+    
Sbjct: 216 VSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFL----LHRLSKSGNGQ 271

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
               +F  M G     P++ TYN+++    +  +++    LF ++ E  L+PD+ TYN +
Sbjct: 272 LVRKFFNDMIG-AGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSL 330

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D YGK G ++E+ S+ + MK   C PDIIT+N LI+ Y K +   +  + F  + ++  
Sbjct: 331 IDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGL 390

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           KP + T++++I  + K  +   A  +F  M      P+  TY  +I       N++ A +
Sbjct: 391 KPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWK 450

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + +++ + G  + + T  A+L+  C  G   EA+ +F +    G++P+   Y  L   Y 
Sbjct: 451 LLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYI 510

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           KA   E   K+LK+M +  I P+
Sbjct: 511 KAERMEDAMKILKQMTECNIKPD 533



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 149/323 (46%), Gaps = 9/323 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI   GK G       LF+EM++ GC PD   YN LI  +     K + + +A
Sbjct: 323 DVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYC----KFEKMPRA 378

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
             YF +MK     KPN+VTY+ L+ A  +   +     LF ++  + L P+ +TY  ++D
Sbjct: 379 FEYFSEMKN-NGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLID 437

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A  K G + E   +L+ M     K +I+T+  L+D   K     + E+VF+S++     P
Sbjct: 438 ANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISP 497

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRARE 247
               + +++  Y KA     A  + ++MT     P  I Y  II  +G+C    +   + 
Sbjct: 498 NQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSII--WGHCSQRKLEETKL 555

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           I +E+   G          +++AY   G  ++A   F+   ++GV     TY +L     
Sbjct: 556 ILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLC 615

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           KA + EL      RM   G+ PN
Sbjct: 616 KAGIVELAVDYFCRMLSLGLQPN 638



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 149/355 (41%), Gaps = 44/355 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI    K+G  + A+ LF +MR +G  P+   Y +LI A+     KA  L +A    
Sbjct: 397 YSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANC----KAGNLTEAWKLL 452

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             M      K NIVTY  LL    +A  + +   +F+ + +  ++P+   Y  ++  Y K
Sbjct: 453 NDML-QAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIK 511

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              +++   +L +M     KPD+I +  +I  +  ++  ++ + + +  M S+     P 
Sbjct: 512 AERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEE-MKSRGISANPV 570

Query: 194 FNSMIIN-YGKARLQGKAEYVFQKMTAMKYTPSFITYECI-------------------- 232
            ++ II+ Y KA     A   FQ+M  +    + +TY C+                    
Sbjct: 571 ISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTY-CVLIDGLCKAGIVELAVDYFCR 629

Query: 233 ---------ITMY-----GYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
                    + +Y     G C N  +  A+++FDE+   G    ++   A+++    +G 
Sbjct: 630 MLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGN 689

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             EA +L      + +  D   Y  L   +++       +K    M + GI+P +
Sbjct: 690 LQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEE 744



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/317 (19%), Positives = 131/317 (41%), Gaps = 9/317 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + K G+   A  +F  M   G  P+  VY AL+  ++    KA+ +  A+   
Sbjct: 467 YTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYI----KAERMEDAM--- 519

Query: 74  QKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           + +K M  C  KP+++ Y  ++      R +++   + +E+    ++ +      ++DAY
Sbjct: 520 KILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAY 579

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G   +  +    M+    +  I+T+ +LID   K    +     F  ++    +P +
Sbjct: 580 FKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNV 639

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             + S+I    K      A+ +F +M     TP    +  +I       N+  A  +   
Sbjct: 640 AVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISR 699

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +++L  +  +    +++  +   G   +A   F      G+ P+      L + Y K   
Sbjct: 700 MTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQ 759

Query: 312 KELVQKLLKRMEQNGIV 328
            +   +L   ME+ G++
Sbjct: 760 LDEAIELKNEMERMGLI 776



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 83/213 (38%), Gaps = 4/213 (1%)

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
           N C      F++L   + +    ++  + F  + + +  P   + N ++    K+     
Sbjct: 213 NICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQL 272

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
               F  M      PS  TY  +I       ++  +R +F ++ ++G    V T N++++
Sbjct: 273 VRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLID 332

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
            Y   G   E   LF    ++G  PD  TY  L   Y K        +    M+ NG+ P
Sbjct: 333 GYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKP 392

Query: 330 NKRFFLEALETFSSSLAGSQSGSAK--TDLTRS 360
           N   +   ++ F     G   G+ K   D+ R+
Sbjct: 393 NVVTYSTLIDAFCKE--GMMQGAIKLFVDMRRT 423



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 5/130 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           +  +Y+ LI  + K      A  LF EM+  G  PD + + ALI  +L    K   L +A
Sbjct: 638 NVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNL----KHGNLQEA 693

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L    +M  +   + ++  Y  L+   +Q   + Q    F E+ E  + P+      ++ 
Sbjct: 694 LVLISRMTELA-IEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLR 752

Query: 130 AYGKNGMIKE 139
            Y K G + E
Sbjct: 753 EYYKRGQLDE 762


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 156/327 (47%), Gaps = 5/327 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           Q  Y   T  Y+ L+ V+ K G+       +++M  +GC P+   Y  L    L +  +A
Sbjct: 10  QVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYL----LRSLCQA 65

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           +   +A   F+ M   + C PN+ +Y+IL+    + + VD+   L  E+ +    P++ T
Sbjct: 66  QRFEEARSVFRGMAA-QGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVT 124

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++    K G +KE   + SRM    C PD + +N+LID + K+    +  ++F+ ++
Sbjct: 125 YGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEML 184

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                PT+ T+NS++  + +    G+ + +F+ M      P+  T+  ++  +    ++ 
Sbjct: 185 EKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMV 244

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  +F E+  LG    V + N ++   C  G P EA  L       GV PD  +Y +L 
Sbjct: 245 EAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILI 304

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
             Y+K+   +   KL   + ++G+ P+
Sbjct: 305 DGYSKSGALDHAIKLFYEIPKSGLEPD 331



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 148/332 (44%), Gaps = 7/332 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  L++ + K G+ + A+ LFS M   GC PD  VYN LI        K   + +A   F
Sbjct: 125 YGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGF----SKKGDMGEAYRLF 180

Query: 74  QKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           ++M  +E+ C P + TYN LL   ++     +V +LFK++      P+I+T+N ++D + 
Sbjct: 181 EEM--LEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFC 238

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G + E   +   M+S  C PD++++N L+     +    + +++ + ++ S   P + 
Sbjct: 239 KMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIV 298

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           ++N +I  Y K+     A  +F ++      P   +Y  II        V  A  +F ++
Sbjct: 299 SYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDM 358

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G     + +  ++   C     TE+  LF+        P    Y LL     KA   
Sbjct: 359 IANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRS 418

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           + V ++   + + G  P+       LET   S
Sbjct: 419 DDVCEIFHELTERGFSPDVEISKVILETLRRS 450



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 135/309 (43%), Gaps = 9/309 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ LI    KKG    A  LF EM   GC P    YN+L++       +     + 
Sbjct: 156 DGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGF----SRKGEFGRV 211

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F+ M   + C PNI T+N LL    +  ++ + + LF E+      PD+ +YN +M 
Sbjct: 212 QSLFKDML-RQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMR 270

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
                G   E + +L  M  +   PDI+++N+LID Y K  A D   ++F  +  S  +P
Sbjct: 271 GMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEP 330

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRARE 247
              +++++I    +A   G A  VF+ M A    P       I  + G C  + ++ + E
Sbjct: 331 DAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVV--IPLVIGLCRGERLTESCE 388

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F  + K      +   N ++   C      +   +F      G +PD    K++ +   
Sbjct: 389 LFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETLR 448

Query: 308 KANMKELVQ 316
           +++ KE  +
Sbjct: 449 RSDDKEAAE 457



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/296 (19%), Positives = 120/296 (40%), Gaps = 35/296 (11%)

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           + +FQ            ++YN LL   A++   D V   + ++  +   P+ YTY  ++ 
Sbjct: 1   MAFFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLR 60

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           +  +    +E  SV   M +  C P++ ++++LI    + Q  D+  ++   ++    +P
Sbjct: 61  SLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQP 120

Query: 190 TLPT-----------------------------------FNSMIINYGKARLQGKAEYVF 214
            + T                                   +N +I  + K    G+A  +F
Sbjct: 121 NVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLF 180

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           ++M      P+  TY  +++ +       R + +F ++ + G    + T N +L+ +C  
Sbjct: 181 EEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKM 240

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           G   EA  LF    ++G  PD  +Y  L +           Q+LL+ M ++G+ P+
Sbjct: 241 GDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPD 296


>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
 gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 157/342 (45%), Gaps = 11/342 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI      G+ R A+ +F +M   GC+P    YN ++  +           K 
Sbjct: 32  DVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVY---GKMGMPWNKI 88

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            G F+ MK      P+  TYN L+  C +    ++  A+F+++      PD  TYN ++D
Sbjct: 89  TGLFEGMKN-AGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLD 147

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK+  IKE   VL  M+ N C P I+T+N LI +Y +    ++  ++   ++    K 
Sbjct: 148 VYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKL 207

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ +M+  + +      A  VF++M      P+  T+  +I M+G     +   ++F
Sbjct: 208 DVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVF 267

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +E+        + T N +L  +  NG+ +E   +F+    +G  P+  TY  L  AY++ 
Sbjct: 268 EEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRC 327

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSG 351
              +    + KRM   GI P+       L T+++ LA    G
Sbjct: 328 GSFDQAMAMYKRMLDTGITPD-------LSTYNAVLAALARG 362



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 174/408 (42%), Gaps = 75/408 (18%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R    D   Y+ +++   + G+   AM +F EMR +GC+P+   +NALI  H   R K 
Sbjct: 202 ERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMH-GNRGK- 259

Query: 64  KALAKALGYFQKMKGMERCKPNIVT----------------------------------- 88
              A+ +  F+++K +  C P+IVT                                   
Sbjct: 260 --FAEMMKVFEEIK-ICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDT 316

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN L+ A ++  + DQ  A++K + ++ + PD+ TYN V+ A  + G+ ++ E +L+ M+
Sbjct: 317 YNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQ 376

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKM--------------------------------- 175
              CKP+ +T   L+ +Y   +   +M                                 
Sbjct: 377 DGMCKPNELTHCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLL 436

Query: 176 --EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
             E+ F  L      P L T N+MI  YG+ ++  K   +   M    +TPS  TY  ++
Sbjct: 437 EAERAFLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLM 496

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
            M+   +N  R+ E+  E+   G    + + N ++ AYC NG   EA  +F      G+ 
Sbjct: 497 YMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLI 556

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           PD  TY     +Y   +M E    ++  M ++G  PN+  +   ++ +
Sbjct: 557 PDVITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGY 604



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 168/343 (48%), Gaps = 10/343 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K    + D   Y+ LI    +      A  +F +M++ G  PD   YN L+  +     K
Sbjct: 96  KNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVY----GK 151

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           ++ + +A+   ++M+ +  C P+IVTYN L+ A A+   +++   L  ++ E  +  D++
Sbjct: 152 SRRIKEAIEVLREME-VNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDVF 210

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++  + + G  +    V   M++  CKP+I TFN LI  +G R  F +M +VF+ +
Sbjct: 211 TYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEI 270

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 P + T+N+++  +G+  +  +   VF++M  + + P   TY  +I+ Y  C + 
Sbjct: 271 KICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSF 330

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  ++  +   G    +ST NA+L A    GL  +++ +     +    P+  T+  L
Sbjct: 331 DQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTHCSL 390

Query: 303 YKAYTKANMKELVQKLLKRMEQ--NGIVPNKRFFLEALETFSS 343
             AY  AN KE + ++L   E+  +G++      L+ L   +S
Sbjct: 391 LHAY--ANGKE-IGRMLALAEEICSGVIEPHAVLLKTLVLVNS 430



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 166/394 (42%), Gaps = 67/394 (17%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K   ++ D   Y+ L+ V GK  + + A+ +  EM  +GC P    YN+LI+A+      
Sbjct: 131 KSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLL 190

Query: 63  AKAL-------------------------------AKALGYFQKMKGMERCKPNIVTYNI 91
            +A+                                 A+  F++M+    CKPNI T+N 
Sbjct: 191 EEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMR-TAGCKPNICTFNA 249

Query: 92  LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151
           L++         ++  +F+E+      PDI T+N ++  +G+NGM  E+  V   MK   
Sbjct: 250 LIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVG 309

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
             P+  T+N LI +Y +  +FD+   ++K ++ +   P L T+N+++    +  L  ++E
Sbjct: 310 FVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSE 369

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGY--------------------------------- 238
            +  +M      P+ +T+  ++  Y                                   
Sbjct: 370 KILAEMQDGMCKPNELTHCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVN 429

Query: 239 --CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
             CD +  A   F EL + G    +STLNAM+  Y    + T+ + +       G TP  
Sbjct: 430 SKCDLLLEAERAFLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSL 489

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +TY  L   ++++   E  +++LK +   GI P+
Sbjct: 490 ATYNSLMYMHSQSENFERSEEVLKEILAKGIKPD 523



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 115/241 (47%), Gaps = 1/241 (0%)

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
           +++    +   V    +L   LH+    PD+Y Y  ++ A   NG  +E   V  +M+  
Sbjct: 3   VIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEE 62

Query: 151 QCKPDIITFNLLIDSYGKR-QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
            CKP +IT+N++++ YGK    ++K+  +F+ + ++   P   T+N++I    +  L  +
Sbjct: 63  GCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEE 122

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  VF+ M +M + P  +TY  ++ +YG    +  A E+  E+   G    + T N+++ 
Sbjct: 123 AAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLIS 182

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           AY  +GL  EA  L       G+  D  TY  +   + +    E   ++ + M   G  P
Sbjct: 183 AYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKP 242

Query: 330 N 330
           N
Sbjct: 243 N 243



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 134/305 (43%), Gaps = 40/305 (13%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  ++ +   Y+ LI+   + G    AM ++  M ++G  PD S YNA++ A L     
Sbjct: 306 KRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAA-LARGGL 364

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL-------------- 108
            +   K L   Q   GM  CKPN +T+  LL A A  + + ++ AL              
Sbjct: 365 WEQSEKILAEMQD--GM--CKPNELTHCSLLHAYANGKEIGRMLALAEEICSGVIEPHAV 420

Query: 109 ---------------------FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
                                F EL     +PD+ T N ++  YG+  M+ +   +L+ M
Sbjct: 421 LLKTLVLVNSKCDLLLEAERAFLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFM 480

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           K +   P + T+N L+  + + + F++ E+V K ++    KP + ++N++I  Y +    
Sbjct: 481 KESGFTPSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGRM 540

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            +A ++F +M      P  ITY   +  Y        A ++   + K G     +T N++
Sbjct: 541 KEASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSV 600

Query: 268 LEAYC 272
           ++ YC
Sbjct: 601 IDGYC 605



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 91/183 (49%), Gaps = 11/183 (6%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD- 61
           K++ +  D    + +IA+ G++        + + M+ SG  P  + YN+L+  H  + + 
Sbjct: 446 KRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENF 505

Query: 62  --KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
               + L + L      KG+   KP+I++YN ++ A  +   + + + +F E+ ES L P
Sbjct: 506 ERSEEVLKEILA-----KGI---KPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIP 557

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D+ TYN  + +Y  + M +E   V+  M  + CKP+  T+N +ID Y K    D   +  
Sbjct: 558 DVITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNRRDDAIKFI 617

Query: 180 KSL 182
            SL
Sbjct: 618 SSL 620



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 8/154 (5%)

Query: 196 SMIIN-YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE---IFDE 251
           ++IIN  GK      A  +   +    + P    Y  +IT    C +  R RE   +F +
Sbjct: 2   AVIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITA---CVSNGRYREAVMVFKK 58

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLP-TEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           + + G    + T N +L  Y   G+P  +   LFE   N G+ PD  TY  L     + +
Sbjct: 59  MEEEGCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGS 118

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           + E    + + M+  G VP+K  +   L+ +  S
Sbjct: 119 LYEEAAAVFEDMKSMGFVPDKVTYNTLLDVYGKS 152


>gi|224069806|ref|XP_002303044.1| predicted protein [Populus trichocarpa]
 gi|222844770|gb|EEE82317.1| predicted protein [Populus trichocarpa]
          Length = 485

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 160/341 (46%), Gaps = 27/341 (7%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q WY    G+Y KLI ++GK  Q   A  LF  M + GC      Y AL++A+    
Sbjct: 130 LREQLWYRPYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAY---- 185

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL------------ 108
            ++    KA    ++MK    C+P++ TY+IL+++C Q    D+V  L            
Sbjct: 186 GRSGLFDKAFSIMEEMKNTPDCRPDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIRPN 245

Query: 109 ---FKELHESIL--------APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
              F E+  +++         PD++T N  + A+G +G ++ ME+   + +S   +P+I 
Sbjct: 246 TVTFAEMEATLMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENCYEKFQSAGIEPNIK 305

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           TFN+L+DSYGK   + KM  V + +       T+ T+N +I  +G+A    + EY+F+ M
Sbjct: 306 TFNILLDSYGKAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLM 365

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
            + +  PS +T   ++  Y       +   +   +      +     N +++AY      
Sbjct: 366 RSERIKPSCVTLCSLVRAYREAGKPEKIGSVLRFIENSDVTLDTVFFNCLVDAYGRLECF 425

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
            E   + E     G  PD  TY+ + KAY+   M    +KL
Sbjct: 426 AEMKEVLELMEEKGCKPDKVTYRTMIKAYSIKGMTSHAKKL 466



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 132/302 (43%), Gaps = 24/302 (7%)

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
           LH R  A   A AL  F+ ++     +P    Y  L+    + +  D+ + LF+ + +  
Sbjct: 111 LHERITALRWASALEVFELLREQLWYRPYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEG 170

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN-QCKPDIITFNLLIDSYGKRQAFDK- 174
            A    +Y  ++ AYG++G+  +  S++  MK+   C+PD+ T+++LI S  +  AFDK 
Sbjct: 171 CAVTHESYTALLSAYGRSGLFDKAFSIMEEMKNTPDCRPDVHTYSILIKSCLQVFAFDKV 230

Query: 175 ---------------------MEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKAEY 212
                                ME     ++  ++ +P + T NS I  +G +      E 
Sbjct: 231 QVLLSDMESLGIRPNTVTFAEMEATLMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMEN 290

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
            ++K  +    P+  T+  ++  YG   N  +   + + + +      + T N +++A+ 
Sbjct: 291 CYEKFQSAGIEPNIKTFNILLDSYGKAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDAFG 350

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             G   + + LF    +  + P   T   L +AY +A   E +  +L+ +E + +  +  
Sbjct: 351 RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYREAGKPEKIGSVLRFIENSDVTLDTV 410

Query: 333 FF 334
           FF
Sbjct: 411 FF 412



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 1/116 (0%)

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
           Y P    Y  +I M G C    +A ++F  +   G  +   +  A+L AY  +GL  +A 
Sbjct: 136 YRPYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAYGRSGLFDKAF 195

Query: 282 LLFENSHNM-GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
            + E   N     PD  TY +L K+  +    + VQ LL  ME  GI PN   F E
Sbjct: 196 SIMEEMKNTPDCRPDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIRPNTVTFAE 251



 Score = 38.5 bits (88), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 15/182 (8%)

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           LI   GK +  DK  Q+F++++      T  ++ +++  YG++ L  KA   F  M  MK
Sbjct: 146 LIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAYGRSGLFDKA---FSIMEEMK 202

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIF--DELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
            TP     +C   ++ Y   +    ++F  D++  L  DM+   +      +       E
Sbjct: 203 NTP-----DCRPDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIRPNTVTFA----EME 253

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
           A L+ E        PD  T     +A+  +   E+++   ++ +  GI PN + F   L+
Sbjct: 254 ATLM-EMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENCYEKFQSAGIEPNIKTFNILLD 312

Query: 340 TF 341
           ++
Sbjct: 313 SY 314


>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
 gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
          Length = 796

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 152/305 (49%), Gaps = 7/305 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+   ++G  R A  +F EM+ +G  PD   +N+L+  +     KA+   +A
Sbjct: 255 DRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVY----GKARRHEEA 310

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +G  +KM+    C P++VTYN L+ A  +   +++   L +E+    + PD+ TY  ++ 
Sbjct: 311 IGVLKKMENAG-CTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLIS 369

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              + G I    +  S M  N C P++ T+N LI  +G R  F +M  VF  L  +   P
Sbjct: 370 GLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVP 429

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+N+++  +G+  L  +   VF++M    Y P   TY  +I+ Y  C    +A EI+
Sbjct: 430 DVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIY 489

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             + + G    +ST NA+L A    G   +A+ LF    +    PD  +Y  L  AY  A
Sbjct: 490 KRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAY--A 547

Query: 310 NMKEL 314
           N K+L
Sbjct: 548 NAKKL 552



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 157/402 (39%), Gaps = 75/402 (18%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+ + + G+   A+  +SEM  +GC P+   YNALI  H   R K     + 
Sbjct: 360 DVVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMH-GVRGK---FTEM 415

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH---------------- 113
           +  F  ++      P++VT+N LL    Q     +V+ +FKE+                 
Sbjct: 416 MIVFDDLRSAGYV-PDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLIS 474

Query: 114 -------------------ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
                              E+ + PDI TYN V+ A  + G   + E + + M+   CKP
Sbjct: 475 SYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKP 534

Query: 155 DIITFNLLIDSYGKRQAFDKM-----------------------------------EQVF 179
           D ++++ L+ +Y   +  DKM                                   E+ F
Sbjct: 535 DELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAF 594

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           + L   +    +   N+M+  YGK ++  K E V   M       S  TY  ++ MY   
Sbjct: 595 QELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRL 654

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            +  +   I  E+   G      + N ++ AY   G   EA  LF      GV PD  TY
Sbjct: 655 GDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTY 714

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            +  K+Y    M E    L++ +   G  PN+R +   LE +
Sbjct: 715 NIFIKSYVANLMFEEAIDLVRYLVAQGCKPNERTYNSILEGY 756



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 149/302 (49%), Gaps = 10/302 (3%)

Query: 44  PDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQ-AR 100
           PD S Y AL++       +A     A+  F++M   G++   P +VTYN++L   ++ + 
Sbjct: 183 PDASAYTALVSEF----SRAGRFRDAVAVFRRMVDGGVQ---PALVTYNVVLHVYSKMSV 235

Query: 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
              +V  L   + E  +  D YTYN ++    + G+ +E   +   MK+   +PD +TFN
Sbjct: 236 PWKEVVVLVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFN 295

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
            L+D YGK +  ++   V K + ++   P++ T+NS+I  Y K  L  +A  + Q+M   
Sbjct: 296 SLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFR 355

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
              P  +TY  +I+       +  A   + E+ + G    + T NA+++ + + G  TE 
Sbjct: 356 GMKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEM 415

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALET 340
            ++F++  + G  PD  T+  L   + +  +   V  + K M++ G +P +  ++  + +
Sbjct: 416 MIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISS 475

Query: 341 FS 342
           +S
Sbjct: 476 YS 477



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 150/319 (47%), Gaps = 13/319 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ L+ V GK  +   A+ +  +M N+GC P    YN+LI+A++    K   L +A
Sbjct: 290 DKVTFNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYV----KDGLLEEA 345

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           L   Q+M  +GM   KP++VTY  L+    +   +D   A + E+  +  +P++ TYN +
Sbjct: 346 LELKQEMEFRGM---KPDVVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNAL 402

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  +G  G   EM  V   ++S    PD++T+N L+  +G+     ++  VFK +  +  
Sbjct: 403 IKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGY 462

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P   T+ S+I +Y +  L  +A  ++++M      P   TY  +++         +A +
Sbjct: 463 IPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEK 522

Query: 248 IFDELSKLGKDMKVSTL--NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           +F E+    +D K   L  +++L AY       +   L E+ +   + P +   K L   
Sbjct: 523 LFAEMED--RDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVLV 580

Query: 306 YTKANMKELVQKLLKRMEQ 324
             K N     +K  + + +
Sbjct: 581 NNKVNSLSETEKAFQELRR 599



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 136/319 (42%), Gaps = 40/319 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  YI +   Y  LI+   + G    AM ++  M  +G  PD S YNA+++A      +
Sbjct: 458 KKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALA----R 513

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL-------------- 108
                +A   F +M+  + CKP+ ++Y+ LL A A A+ +D++ AL              
Sbjct: 514 GGRWVQAEKLFAEMEDRD-CKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNW 572

Query: 109 ---------------------FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
                                F+EL     + DI   N ++  YGKN M+K++E VL+ M
Sbjct: 573 LVKTLVLVNNKVNSLSETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLM 632

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           K N       T+N L+  Y +    +K E +   +  S  +P   ++N++I  YG+    
Sbjct: 633 KENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQM 692

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            +A  +F +M      P  +TY   I  Y        A ++   L   G      T N++
Sbjct: 693 KEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKPNERTYNSI 752

Query: 268 LEAYCMNGLPTEADLLFEN 286
           LE YC +G   EA     N
Sbjct: 753 LEGYCRHGRMVEAKSFLSN 771


>gi|296083087|emb|CBI22491.3| unnamed protein product [Vitis vinifera]
          Length = 548

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 165/392 (42%), Gaps = 75/392 (19%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L++   K G+ + A+ +F EMRN GC+P+   +NALI  H   R K   + K 
Sbjct: 103 DVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMH-GNRGKFTEMMKV 161

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQ------------------------------- 98
              F+ +K  + C P+IVT+N LL    Q                               
Sbjct: 162 ---FEDIKTFQ-CSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLIS 217

Query: 99  ----ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
                 + DQ  A++K + E+ + PD+ +YN V+ A  + G+ K+ E VL+ MK  +CKP
Sbjct: 218 SYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKP 277

Query: 155 DIITFNLLIDSYGKRQAFDKM-----------------------------------EQVF 179
           + +T+  L+ +Y   +  ++M                                   E+ F
Sbjct: 278 NELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAF 337

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             L      P + T N+M+  YG+ ++  KA  +   M    +TPS  TY  ++ MY   
Sbjct: 338 LELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRS 397

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            N  R+ EI  E+   G    + + N ++ AYC NG   +A  +       G  PD  TY
Sbjct: 398 ANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITY 457

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
                +Y   +M      ++  M ++G  PN+
Sbjct: 458 NTFIASYAADSMFVEAIDVVCYMIKHGCKPNQ 489



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 153/336 (45%), Gaps = 40/336 (11%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ L ++M   G +PD   Y  L++      +KA     A+  F++M+  E CKPNI T+
Sbjct: 88  ALELKNQMVEKGIKPDVFTYTTLLSGF----EKAGKDKAAVQIFEEMRN-EGCKPNICTF 142

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           N L++         ++  +F+++     +PDI T+N ++  +G+NGM  E+  V   MK 
Sbjct: 143 NALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKR 202

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
               P+  TFN LI SY +  +FD+   V+K ++ +   P L ++N+++    +  L  +
Sbjct: 203 AGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQ 262

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYG-------------------------------- 237
           +E V  +M   +  P+ +TY  ++  Y                                 
Sbjct: 263 SEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVL 322

Query: 238 ---YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
               CD +      F EL + G    ++TLNAM+  Y    +  +A+ + +     G TP
Sbjct: 323 VNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTP 382

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +TY  L   Y+++   E  +++L+ +   GI P+
Sbjct: 383 SLTTYNSLMYMYSRSANFERSEEILREILAKGIRPD 418



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 146/318 (45%), Gaps = 19/318 (5%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  ++ +   ++ LI+   + G    AM ++  M  +G  PD S YNA++         
Sbjct: 201 KRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLA-------- 252

Query: 63  AKALAKALGYFQKMKGME-----RCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
             ALA+   + Q  K +      RCKPN +TY  LL A A  + ++++ AL +E++  I+
Sbjct: 253 --ALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGII 310

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
            P       ++    K  ++ E E     ++     PDI T N ++  YG+RQ   K  +
Sbjct: 311 EPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANE 370

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           +   +      P+L T+NS++  Y ++    ++E + +++ A    P  I+Y  +I  Y 
Sbjct: 371 ILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVI--YA 428

Query: 238 YCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           YC N  +  A  +  E+ + G    + T N  + +Y  + +  EA  +       G  P+
Sbjct: 429 YCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPN 488

Query: 296 SSTYKLLYKAYTKANMKE 313
            STY  +   Y K N ++
Sbjct: 489 QSTYNSIVDWYCKLNRRD 506



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 119/233 (51%), Gaps = 5/233 (2%)

Query: 108 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
           L  ++ E  + PD++TY  ++  + K G  K    +   M++  CKP+I TFN LI  +G
Sbjct: 91  LKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHG 150

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
            R  F +M +VF+ +   +  P + T+N+++  +G+  +  +   VF++M    + P   
Sbjct: 151 NRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERD 210

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           T+  +I+ Y  C +  +A  ++  + + G +  +S+ NA+L A    GL  +++ +    
Sbjct: 211 TFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEM 270

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ--NGIVPNKRFFLEAL 338
            +    P+  TY  L  AY  AN KE ++++    E+  +GI+  +   L+ L
Sbjct: 271 KDGRCKPNELTYCSLLHAY--ANGKE-IERMCALAEEIYSGIIEPRAVLLKTL 320



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 88/180 (48%), Gaps = 5/180 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR +  D    + ++++ G++     A  +   M+  G  P  + YN+L+  ++++R  
Sbjct: 341 RQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLM--YMYSRSA 398

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
               ++ +      KG+   +P+I++YN ++ A  +   +   + +  E+ ES  APDI 
Sbjct: 399 NFERSEEILREILAKGI---RPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDII 455

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN  + +Y  + M  E   V+  M  + CKP+  T+N ++D Y K    D+      +L
Sbjct: 456 TYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEASMFVNNL 515


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 157/336 (46%), Gaps = 17/336 (5%)

Query: 2   QKQRW--YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT 59
            K  W  +  D  IY+ LI  + K G T  A+ L   M    C+PD  VY  LI    H+
Sbjct: 168 DKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLI----HS 223

Query: 60  RDKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
             K +   +A   F +M  KG+    PNIVT N L+ A         VN L  E+ +S +
Sbjct: 224 LCKDRQQTQAFNLFSEMITKGI---SPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKI 280

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
            P+  +   V+DA  K GM+ +   V+  M  +  +PD++T+  LID +  R   D+  +
Sbjct: 281 MPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVK 340

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           VF  ++H    P + ++N++I  Y K     KA Y+F++M   K  P+ +TY  +I  +G
Sbjct: 341 VFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLI--HG 398

Query: 238 YCDNVSRARE---IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
            C +V R ++   +F E+   G+   + T   +L+  C N    +A  L +      + P
Sbjct: 399 LC-HVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDP 457

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           D   Y ++     +A   E  + L   +   G+ PN
Sbjct: 458 DIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPN 493



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 119/267 (44%), Gaps = 5/267 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI     + +   A+ +F  M + GC P+   YN LI  +     K + + KA
Sbjct: 318 DVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYC----KIERMDKA 373

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +  F++M   ++  PN VTYN L+        +    ALF+E+      PD+ TY  ++D
Sbjct: 374 MYLFEEM-CRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLD 432

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              KN  + +  ++L  ++ +   PDI  + ++ID   +    +    +F +L     KP
Sbjct: 433 YLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKP 492

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+N M     K  L  +A  +F +M     +    TY  I   +   +  SRA ++ 
Sbjct: 493 NVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLL 552

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGL 276
           +E+   G    VST   ++     +GL
Sbjct: 553 EEMLARGFSCDVSTTTLLVGMLSDDGL 579



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/320 (20%), Positives = 136/320 (42%), Gaps = 11/320 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++K++  + K  +    + L  +M + G   +    N LI +  H  ++       L   
Sbjct: 77  FAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSFCHL-NRVNFAFSVLAKI 135

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+     C+P+  ++  L++       + +   LF ++      PD+  Y  +++   K
Sbjct: 136 LKLG----CQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCK 191

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G       +L  M+   C+PD++ +  LI S  K +   +   +F  ++     P + T
Sbjct: 192 TGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVT 251

Query: 194 FNSMIINYGKARLQGKAEYV---FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
            NS++  Y    L G+ ++V     +M   K  P+ I+   ++        V++A ++ D
Sbjct: 252 CNSLV--YALCNL-GEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVD 308

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            + + G +  V T  A+++ +C+     EA  +F+   + G  P+  +Y  L   Y K  
Sbjct: 309 MMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIE 368

Query: 311 MKELVQKLLKRMEQNGIVPN 330
             +    L + M +  ++PN
Sbjct: 369 RMDKAMYLFEEMCRQKLIPN 388



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 133/319 (41%), Gaps = 51/319 (15%)

Query: 57  LHTRDKAK-----ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE 111
           LH R ++K      L  AL  F +M  M    P+IV +  +L +  + +    V +L ++
Sbjct: 41  LHNRFRSKYLHFNTLDDALSSFNRMLHMHP-PPSIVDFAKILTSITKVKRYSTVLSLSRK 99

Query: 112 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-- 169
           +    +  ++YT N +++++     +    SVL+++    C+PD  +F  LI        
Sbjct: 100 MDSFGIPHNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQ 159

Query: 170 -----QAFDKM----------------------------EQVFKSLMHSKEKPTLPTFNS 196
                  FDKM                             ++ +S+     +P +  + +
Sbjct: 160 IGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGT 219

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           +I +  K R Q +A  +F +M     +P+ +T  C   +Y  C N+   + +   L+++ 
Sbjct: 220 LIHSLCKDRQQTQAFNLFSEMITKGISPNIVT--CNSLVYALC-NLGEWKHVNTLLNEM- 275

Query: 257 KDMKVS----TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT-KANM 311
            D K+     +L  +++A C  G+  +A  + +     GV PD  TY  L   +  ++ M
Sbjct: 276 VDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEM 335

Query: 312 KELVQKLLKRMEQNGIVPN 330
            E V K+   M   G  PN
Sbjct: 336 DEAV-KVFDMMVHKGCAPN 353


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 156/327 (47%), Gaps = 5/327 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           Q  Y   T  Y+ L+ V+ K G+       +++M  +GC P+   Y  L    L +  +A
Sbjct: 10  QVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYL----LRSLCQA 65

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           +   +A   F+ M   + C PN+ +Y+IL+    + + VD+   L  E+ +    P++ T
Sbjct: 66  QRFEEARSVFRGMAA-QGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVT 124

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++    K G +KE   + SRM    C PD + +N+LID + K+    +  ++F+ ++
Sbjct: 125 YGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEML 184

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                PT+ T+NS++  + +    G+ + +F+ M      P+  T+  ++  +    ++ 
Sbjct: 185 EKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMV 244

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  +F E+  LG    V + N ++   C  G P EA  L       GV PD  +Y +L 
Sbjct: 245 EAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILI 304

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
             Y+K+   +   KL   + ++G+ P+
Sbjct: 305 DGYSKSGALDHAIKLFYEIPKSGLEPD 331



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 148/332 (44%), Gaps = 7/332 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  L++ + K G+ + A+ LFS M   GC PD  VYN LI        K   + +A   F
Sbjct: 125 YGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGF----SKKGDMGEAYRLF 180

Query: 74  QKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           ++M  +E+ C P + TYN LL   ++     +V +LFK++      P+I+T+N ++D + 
Sbjct: 181 EEM--LEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFC 238

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G + E   +   M+S  C PD++++N LI     +    + +++ + ++ S   P + 
Sbjct: 239 KMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIV 298

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           ++N +I  Y K+     A  +F ++      P   +Y  II        V  A  +F ++
Sbjct: 299 SYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDM 358

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G     + +  ++   C     TE+  LF+        P    Y LL     KA   
Sbjct: 359 IANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRS 418

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           + V ++   + + G  P+       LET   S
Sbjct: 419 DDVCEIFHELTERGFSPDVEISKVILETLRRS 450



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 135/309 (43%), Gaps = 9/309 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ LI    KKG    A  LF EM   GC P    YN+L++       +     + 
Sbjct: 156 DGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGF----SRKGEFGRV 211

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F+ M   + C PNI T+N LL    +  ++ + + LF E+      PD+ +YN ++ 
Sbjct: 212 QSLFKDML-RQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIR 270

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
                G   E + +L  M  +   PDI+++N+LID Y K  A D   ++F  +  S  +P
Sbjct: 271 GMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEP 330

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRARE 247
              +++++I    +A   G A  VF+ M A    P       I  + G C  + ++ + E
Sbjct: 331 DAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVV--IPLVIGLCRGERLTESCE 388

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F  + K      +   N ++   C      +   +F      G +PD    K++ +   
Sbjct: 389 LFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETLR 448

Query: 308 KANMKELVQ 316
           +++ K+  +
Sbjct: 449 RSDDKDAAE 457



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/296 (19%), Positives = 120/296 (40%), Gaps = 35/296 (11%)

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           + +FQ            ++YN LL   A++   D V   + ++  +   P+ YTY  ++ 
Sbjct: 1   MAFFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLR 60

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           +  +    +E  SV   M +  C P++ ++++LI    + Q  D+  ++   ++    +P
Sbjct: 61  SLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQP 120

Query: 190 TLPT-----------------------------------FNSMIINYGKARLQGKAEYVF 214
            + T                                   +N +I  + K    G+A  +F
Sbjct: 121 NVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLF 180

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           ++M      P+  TY  +++ +       R + +F ++ + G    + T N +L+ +C  
Sbjct: 181 EEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKM 240

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           G   EA  LF    ++G  PD  +Y  L +           Q+LL+ M ++G+ P+
Sbjct: 241 GDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPD 296


>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
 gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
          Length = 1443

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 161/326 (49%), Gaps = 3/326 (0%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           A   +++ ++ V  + G+   A  L   M + G  PD   +N LI A   +   A  +A 
Sbjct: 219 ATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVAL 278

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
            L +  +  G+   +P+++TYN L+ AC+Q+ N++    +F+E+  S   PD++TYN ++
Sbjct: 279 DLLFEVRQSGL---RPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMV 335

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
             +G+ G  +E E +   +      PD +T+N L+ ++ K    DK+E   + L+ +  K
Sbjct: 336 SVHGRCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFK 395

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
               T+N+MI  YGK      A  ++ +M A+  TP  +TY  +I   G  D ++ A ++
Sbjct: 396 KNEITYNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKV 455

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            ++++  G    +   +A++ AY   G   +A+  F+     GV PD   Y ++   + +
Sbjct: 456 LEDMADAGLKPTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFAR 515

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
           +   E + +L + M  +   P+   +
Sbjct: 516 SGETEKMLRLYRTMMNDNYRPDDDMY 541



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 168/347 (48%), Gaps = 17/347 (4%)

Query: 6   WYIADTGIYSKLIAV----MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR- 60
           W    T   S+ +AV    +G+  Q  +A  +F  +R +G      V+NA++  +  +  
Sbjct: 179 WLARSTAPASRAVAVVLGVLGRARQDSIAEEVF--LRFAGEGATVQVFNAMMGVYARSGR 236

Query: 61  -DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL--FKELHESIL 117
            D A+ L   +      +G++   P++V++N L+ A +++  +    AL    E+ +S L
Sbjct: 237 FDDARQLLDTM----HDRGID---PDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGL 289

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
            PD+ TYN ++ A  ++  +++  +V   M +++C+PD+ T+N ++  +G+    ++ E+
Sbjct: 290 RPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGKAEEAER 349

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           +F  L+     P   T+NS++  + K     K E+  +++    +  + ITY  +I MYG
Sbjct: 350 LFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIHMYG 409

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
               +  A  ++DE+  +G      T   M+++        EA  + E+  + G+ P   
Sbjct: 410 KMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLKPTLV 469

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            +  L  AY K   +   +K    M  +G+ P++  +L  L+ F+ S
Sbjct: 470 AFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARS 516



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/360 (20%), Positives = 159/360 (44%), Gaps = 40/360 (11%)

Query: 10   DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
            D  I++ LI    + G    A  +F  M  +G  P     N ++ A L    +   L   
Sbjct: 779  DRRIWNALIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRA-LIVDGRLDELYVV 837

Query: 70   LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            +G  Q M      K +  T  ++L A A+A +V +V  ++  +  +   P+++ Y  +  
Sbjct: 838  VGELQDMD----FKISKSTVLLMLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTS 893

Query: 130  AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
                +   +++E +++ M+    KPD+  FN L++ Y     FD+  QV++S++ +  +P
Sbjct: 894  LLCHHNRFRDVELMIAEMEGAGFKPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEP 953

Query: 190  TLPTFNSMIINY-----------------------------------GKARLQGKAEYVF 214
               T+N++I+ Y                                    KA L+ +A+ +F
Sbjct: 954  DEDTYNTLIVMYCRSLRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQLF 1013

Query: 215  QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
            ++M +  Y  +   Y  ++ +Y    N S+A  +   + + G +  ++T++ ++ +Y   
Sbjct: 1014 EEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTA 1073

Query: 275  GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            G P EA+ +  +  +  +   +  Y  ++ AY K    +L  K L  M+++G+ P+ + +
Sbjct: 1074 GQPHEAENVLNSLKSSSLEVSTLPYSTVFDAYLKNGDYDLGIKKLLEMKRDGVEPDHQVW 1133



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 129/310 (41%), Gaps = 21/310 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH--TRDKAKALA 67
           D   Y+ +++V G+ G+   A  LF E+   G  PD   YN+L+ A       DK +   
Sbjct: 327 DLWTYNAMVSVHGRCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTC 386

Query: 68  KAL---GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           + L   G+          K N +TYN ++    +   +D    L+ E+      PD  TY
Sbjct: 387 EELVKAGF----------KKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTY 436

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
             ++D+ GK   I E   VL  M     KP ++ F+ LI +Y K       E+ F  ++ 
Sbjct: 437 TVMIDSLGKMDKIAEAGKVLEDMADAGLKPTLVAFSALICAYAKGGRRADAEKTFDCMIA 496

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
           S  KP    +  M+  + ++    K   +++ M    Y P    Y+ ++      D    
Sbjct: 497 SGVKPDRLAYLVMLDVFARSGETEKMLRLYRTMMNDNYRPDDDMYQVLLVALAKEDKCEE 556

Query: 245 AREIFDELSKLGKDMKVSTLNAML-EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
             EI  ++  L + M +  ++ +L +A C+    ++   L + +   G  PD+ +   + 
Sbjct: 557 IEEIIQDMELLCQ-MSLGVISTILIKARCV----SQGGKLLKKACLQGYKPDAKSLWSIM 611

Query: 304 KAYTKANMKE 313
            AY      E
Sbjct: 612 NAYVMTEKHE 621



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 119/288 (41%), Gaps = 22/288 (7%)

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA-RNVDQVNALFKELHESILAP 119
           D A+A    + +  +  G    +  +  +  L R+ A A R V  V  +     +  +A 
Sbjct: 149 DGARATPDEVAFVVRAVGESSWRRALDAFEWLARSTAPASRAVAVVLGVLGRARQDSIAE 208

Query: 120 DIY-----------TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
           +++            +N +M  Y ++G   +   +L  M      PD+++FN LI++  K
Sbjct: 209 EVFLRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSK 268

Query: 169 RQ------AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
                   A D + +V +S +    +P + T+N++I    ++     A  VF++M A + 
Sbjct: 269 SGCLAAGVALDLLFEVRQSGL----RPDVITYNTLISACSQSSNLEDAVTVFEEMIASEC 324

Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
            P   TY  +++++G C     A  +F EL + G      T N++L A+   G   + + 
Sbjct: 325 RPDLWTYNAMVSVHGRCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEH 384

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             E     G   +  TY  +   Y K    +L   L   M   G  P+
Sbjct: 385 TCEELVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPD 432



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/214 (19%), Positives = 102/214 (47%), Gaps = 5/214 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++ ++ D   Y+ L+    K+G          E+  +G + +   YN +I    H   K 
Sbjct: 356 EKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMI----HMYGKM 411

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L  A+G + +M+ +  C P+ VTY +++ +  +   + +   + +++ ++ L P +  
Sbjct: 412 GRLDLAVGLYDEMRAVG-CTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLKPTLVA 470

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           ++ ++ AY K G   + E     M ++  KPD + + +++D + +    +KM ++++++M
Sbjct: 471 FSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARSGETEKMLRLYRTMM 530

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           +   +P    +  +++   K     + E + Q M
Sbjct: 531 NDNYRPDDDMYQVLLVALAKEDKCEEIEEIIQDM 564



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 142/338 (42%), Gaps = 21/338 (6%)

Query: 17   LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVY---NALITAHLHTRDKAKALAKALGYF 73
            ++    K G     M +++ M+ +G  P+  +Y    +L+  H   RD    +A+  G  
Sbjct: 856  MLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTSLLCHHNRFRDVELMIAEMEG-- 913

Query: 74   QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
                G    KP++  +N LL     A N D+   +++ + E+ L PD  TYN ++  Y +
Sbjct: 914  ---AGF---KPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLIVMYCR 967

Query: 134  NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            +   +E  ++L+ M      P + ++  L+ +  K +  ++ +Q+F+ +     +     
Sbjct: 968  SLRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQLFEEMRSKSYQLNRSI 1027

Query: 194  FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            ++ M+  Y  A    KAE +   M      P+  T   ++T YG       A  + + L 
Sbjct: 1028 YHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPHEAENVLNSLK 1087

Query: 254  KLGKDMKVSTL--NAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKAYTK 308
                 ++VSTL  + + +AY  NG   + DL  +    M   GV PD   +    +A + 
Sbjct: 1088 --SSSLEVSTLPYSTVFDAYLKNG---DYDLGIKKLLEMKRDGVEPDHQVWTCFIRAASL 1142

Query: 309  ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLA 346
                     LLK ++  G     R   E   +  S +A
Sbjct: 1143 CEQTADAILLLKSLQDCGFDLPIRLLTERTPSLLSEIA 1180



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 123/293 (41%), Gaps = 38/293 (12%)

Query: 7    YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL------HTR 60
            Y+ +  +Y  + +++    + R    + +EM  +G +PD S++N+L+  +        T 
Sbjct: 881  YLPNMHLYRSMTSLLCHHNRFRDVELMIAEMEGAGFKPDLSIFNSLLNMYTAAGNFDRTT 940

Query: 61   DKAKALAKA-------------LGYFQKMK-----------GMERCKPNIVTYNILLRAC 96
               +++ +A             + Y + ++           G     P + +Y  LL A 
Sbjct: 941  QVYQSILEAGLEPDEDTYNTLIVMYCRSLRPEEGFTLLNEMGKRGLTPKLQSYKSLLAAS 1000

Query: 97   AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
            A+A   +Q + LF+E+       +   Y+ +M  Y   G   + E++L+ MK +  +P I
Sbjct: 1001 AKAELREQADQLFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTI 1060

Query: 157  ITFNLLIDSYGKRQAFDKMEQVFKSLMHSK-EKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
             T ++L+ SYG      + E V  SL  S  E  TLP ++++   Y K    G  +   +
Sbjct: 1061 ATMHILMTSYGTAGQPHEAENVLNSLKSSSLEVSTLP-YSTVFDAYLK---NGDYDLGIK 1116

Query: 216  KMTAMK---YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
            K+  MK     P    + C I     C+  + A  +   L   G D+ +  L 
Sbjct: 1117 KLLEMKRDGVEPDHQVWTCFIRAASLCEQTADAILLLKSLQDCGFDLPIRLLT 1169



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 68/343 (19%), Positives = 134/343 (39%), Gaps = 26/343 (7%)

Query: 13   IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
            +Y  LI  + +      A  +F +M+  G     ++Y ++I+ +             LG+
Sbjct: 677  LYEHLITCLVEAELFSEACQVFCDMQFIGIEASKNIYESIISTYCK-----------LGF 725

Query: 73   FQKMKG-MERCKPNIVTYNIL------LRACAQARNVDQVNALFKELHESILAPDIYTYN 125
             +   G M+    + +  NIL      + A    +   Q   L K L ++    D   +N
Sbjct: 726  PETAHGLMDDALQSGIPLNILSCRVIIIEAYGNIKLWQQAEILVKGLRQAS-GIDRRIWN 784

Query: 126  GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
             ++ AY ++G+ ++  +V   M      P + + N ++ +       D++  V   L   
Sbjct: 785  ALIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVGELQDM 844

Query: 186  KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              K +  T   M+  + KA    +   ++  M A  Y P+   Y  + ++  + +     
Sbjct: 845  DFKISKSTVLLMLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTSLLCHHNRFRDV 904

Query: 246  REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
              +  E+   G    +S  N++L  Y   G       ++++    G+ PD  TY  L   
Sbjct: 905  ELMIAEMEGAGFKPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLIVM 964

Query: 306  YTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 348
            Y ++   E    LL  M + G+ P        L+++ S LA S
Sbjct: 965  YCRSLRPEEGFTLLNEMGKRGLTPK-------LQSYKSLLAAS 1000


>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 155/317 (48%), Gaps = 4/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +++  G+ G+ R A+ +F  M+ +GC+P+   YN +I A          L +AL  F
Sbjct: 238 YSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDA---CGKGGVDLKQALDIF 294

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+  E  +P+ +T+N L+  C++    +    +F E+    +  DI+T+N ++DA  K
Sbjct: 295 DEMQ-KEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCK 353

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++   S+++ M+     P+++T++ +ID YGK   F++   ++  +  S  +P   +
Sbjct: 354 GGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVS 413

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N++I  Y K      A    + M  +      +TY  +I  YG       A  +FD++ 
Sbjct: 414 YNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMK 473

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V T +A++++Y   G+  +   +F      G+ PD   Y  L  +  K  + E
Sbjct: 474 GEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVE 533

Query: 314 LVQKLLKRMEQNGIVPN 330
               LL+ M Q GI PN
Sbjct: 534 DAVVLLQEMTQAGIQPN 550



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 153/357 (42%), Gaps = 82/357 (22%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           + S +I+ +G+ G+  +A+ +F+  + +G   +   Y+A+++A+     ++    +AL  
Sbjct: 202 LASIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAY----GRSGRCREALKV 257

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           FQ MK    CKPN++                                   TYN ++DA G
Sbjct: 258 FQAMK-KAGCKPNLI-----------------------------------TYNTIIDACG 281

Query: 133 KNGM-IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           K G+ +K+   +   M+    +PD ITFN LI    +   ++  ++VF  +     +  +
Sbjct: 282 KGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDI 341

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVSRAREI 248
            TFN++I    K    G+ E     MT M+    +P+ +TY  +I  YG       A  +
Sbjct: 342 FTFNTLIDAVCKG---GQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISL 398

Query: 249 FDEL-------------------SKLG---------KDMK-------VSTLNAMLEAYCM 273
           + ++                   +KLG         KDM+       V T NA+++AY  
Sbjct: 399 YHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGK 458

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            G   +A  LF+     G+ P+  TY  L  +Y+KA M + V  +    ++ G+ P+
Sbjct: 459 QGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPD 515



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 111/244 (45%), Gaps = 34/244 (13%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD   Y+ LI   GK+G+ + A  LF +M+  G  P+   Y+ALI ++     KA     
Sbjct: 444 ADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSY----SKAGMHQD 499

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
               F + K     KP++V Y+ L+ +C +   V+    L +E+ ++ + P+I TYN ++
Sbjct: 500 VSNVFTEFK-RAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLI 558

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           DAYG+ G   ++E+V + M ++            +   G+R     ME V         K
Sbjct: 559 DAYGRYGQADKLEAVKANMPNS------------VQKIGER----SMEVV--------RK 594

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P  P+  +   + G       A  VF +M      P+ +T+  I+     C ++  A  +
Sbjct: 595 PP-PSQQNASDHTGVL----AAVSVFHEMQQFGLKPNVVTFSAILNACSRCASLQEASVL 649

Query: 249 FDEL 252
            +++
Sbjct: 650 LEQM 653


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 170/394 (43%), Gaps = 79/394 (20%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L++   + G+   AM +F+EMR +GC+P+   +NALI  H   R K    A+ 
Sbjct: 208 DVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMH-GNRGK---FAEM 263

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH---------------- 113
           +  F+++K    C P+IVT+N LL    Q     +V+ +FKE+                 
Sbjct: 264 MKVFEEIKN-SCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLIS 322

Query: 114 -------------------ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
                              E+ + PD+ TYN V+ A  + G+ ++ E + + MK  +CKP
Sbjct: 323 AYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKP 382

Query: 155 DIITFNLLIDSYGKRQAFDKM-----------------------------------EQVF 179
           + +T+  L+ +Y   +   +M                                   E  F
Sbjct: 383 NELTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAF 442

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             L      P L T N+M+  YG+ ++  K   +   M    +TPS  TY  ++ M+   
Sbjct: 443 LELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRS 502

Query: 240 DNVSRAREIFDELSKLGKDMKVSTL--NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
           +N  R+ E+  E+  L K +K  T+  N ++ AYC NG   EA  +F      G+ PD  
Sbjct: 503 ENFERSEEVLKEI--LAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVI 560

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           TY     +Y   +M E    +++ M ++G  PN+
Sbjct: 561 TYNTFVASYAADSMFEDAIDVVRYMIKHGCKPNQ 594



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 155/342 (45%), Gaps = 11/342 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI      G+ R A+ +F +M   GC+P    YN ++  +           K 
Sbjct: 32  DVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVY---GKMGMPWNKI 88

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            G F+ MK      P+  TYN L+  C +    ++  A+FK++      PD  TYN ++D
Sbjct: 89  KGLFEGMKN-AGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLD 147

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK+   KE   VL  M+ N C P I+T+N LI +Y +     +  ++   ++      
Sbjct: 148 VYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINL 207

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ +++  + +A     A  VF +M A    P+  T+  +I M+G     +   ++F
Sbjct: 208 DVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVF 267

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +E+        + T N +L  +  NG+ +E   +F+     G  P+  TY  L  AY++ 
Sbjct: 268 EEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRC 327

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSG 351
              +    + KRM + GI P+       L T+++ LA    G
Sbjct: 328 GSFDQAMDIYKRMLEAGITPD-------LSTYNAVLAALARG 362



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 170/338 (50%), Gaps = 10/338 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K    + D   Y+ LI    +      A  +F +M++ G  PD   YNAL+  +     K
Sbjct: 96  KNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVY----GK 151

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           ++   +A+   ++M+ +  C P+IVTYN L+ A A+   + +   L  ++ E  +  D++
Sbjct: 152 SRRTKEAMEVLREME-VNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVF 210

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++  + + G  +    V + M++  CKP+I TFN LI  +G R  F +M +VF+ +
Sbjct: 211 TYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEI 270

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
            +S   P + T+N+++  +G+  +  +   VF++M    + P   TY  +I+ Y  C + 
Sbjct: 271 KNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSF 330

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A +I+  + + G    +ST NA+L A    GL  +++ +F    +    P+  TY  L
Sbjct: 331 DQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSL 390

Query: 303 YKAYTKANMKELVQKLLKRMEQ--NGIVPNKRFFLEAL 338
             AY  AN KE + ++L   E+  +G++      L+ L
Sbjct: 391 LHAY--ANGKE-IGRMLALAEEICSGVIEPHAVLLKTL 425



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 151/320 (47%), Gaps = 23/320 (7%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  ++ +   Y+ LI+   + G    AM ++  M  +G  PD S YNA++ A      +
Sbjct: 306 KRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAA----LAR 361

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
                ++   F +MK   RCKPN +TY  LL A A  + + ++ AL +E+   ++ P   
Sbjct: 362 GGLWEQSEKIFAEMKD-GRCKPNELTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAV 420

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
               ++    K  ++ E E     +K     PD+ T N ++  YG+RQ F K  ++   +
Sbjct: 421 LLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFM 480

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN- 241
             S   P+L T+NS++  + ++    ++E V +++ A    P  I+Y  +I  + YC N 
Sbjct: 481 NESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKPDTISYNTVI--FAYCRNG 538

Query: 242 -VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM-------GVT 293
            +  A  IF E+ + G    V T N  + +Y        AD +FE++ ++       G  
Sbjct: 539 RMKEASRIFSEMRESGLVPDVITYNTFVASYA-------ADSMFEDAIDVVRYMIKHGCK 591

Query: 294 PDSSTYKLLYKAYTKANMKE 313
           P+ +TY  +   Y K N ++
Sbjct: 592 PNQNTYNSVVDGYCKHNHRD 611



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 115/241 (47%), Gaps = 1/241 (0%)

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
           +++    +   V    +L  +LH+     D+Y Y  ++ A   NG  +E   V  +M+  
Sbjct: 3   VIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEE 62

Query: 151 QCKPDIITFNLLIDSYGKR-QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
            CKP +IT+N++++ YGK    ++K++ +F+ + ++   P   T+N++I    +  L  +
Sbjct: 63  GCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEE 122

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  VF+ M +M + P  +TY  ++ +YG       A E+  E+   G    + T N+++ 
Sbjct: 123 AAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLIS 182

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           AY  +GL  EA  L       G+  D  TY  L   + +A   E   ++   M   G  P
Sbjct: 183 AYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKP 242

Query: 330 N 330
           N
Sbjct: 243 N 243



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 124/277 (44%), Gaps = 1/277 (0%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-IKEMESV 143
           ++  Y  L+ AC       +   +FK++ E    P + TYN +++ YGK GM   +++ +
Sbjct: 32  DVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIKGL 91

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
              MK+    PD  T+N LI    +    ++   VFK +      P   T+N+++  YGK
Sbjct: 92  FEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGK 151

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           +R   +A  V ++M     +PS +TY  +I+ Y     +  A E+ +++ + G ++ V T
Sbjct: 152 SRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFT 211

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
              +L  +   G    A  +F      G  P+  T+  L K +        + K+ + ++
Sbjct: 212 YTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIK 271

Query: 324 QNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRS 360
            +  VP+   +   L  F  +   S+      ++ R+
Sbjct: 272 NSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA 308


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 158/342 (46%), Gaps = 11/342 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI      G+ R A+ +F ++   GCRP    YN ++  +          +K 
Sbjct: 219 DIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVY---GKMGMPWSKI 275

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            G    MK      P++ TYN L+ +C +    ++   +F+E+  +  +PD  TYN ++D
Sbjct: 276 AGLVDSMKS-SGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLD 334

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK+   +E   VL  M+++   P I+T+N LI +Y +    D+  ++   ++    KP
Sbjct: 335 VYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKP 394

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ +++  + K      A  VF++M      P+  T+  +I M+G   N     ++F
Sbjct: 395 DVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVF 454

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +E+        + T N +L  +  NG+ +E   +F+     G  P+  T+  L  AY++ 
Sbjct: 455 EEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRC 514

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSG 351
              +    + +RM   G+ P+       L T+++ LA    G
Sbjct: 515 GFFDQAMAIYRRMLDAGVTPD-------LSTYNAVLAALARG 549



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 172/402 (42%), Gaps = 75/402 (18%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L++   K G+   AM +F EMR +GC+P+   +NALI  H +  +      + 
Sbjct: 395 DVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGN----FVEM 450

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH---------------- 113
           +  F+++K  E C P+IVT+N LL    Q     +V+ +FKE+                 
Sbjct: 451 MKVFEEIKICE-CVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLIS 509

Query: 114 -------------------ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
                              ++ + PD+ TYN V+ A  + G+ ++ E VL+ MK  +CKP
Sbjct: 510 AYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKP 569

Query: 155 DIITFNLLIDSYGKRQAFDKM-----------------------------------EQVF 179
           + +T+  L+ +Y   +  ++M                                   E+ F
Sbjct: 570 NELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAF 629

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             L      P + T N+M+  YG+ R+  K   +   +    +TPS  TY  ++ MY   
Sbjct: 630 LELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRT 689

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           ++  ++ +I  E+   G    + + N ++ AYC NG   EA  +F    + G+ PD  TY
Sbjct: 690 EHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITY 749

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
                +Y   +M      ++K M +N   PN+  +   ++ F
Sbjct: 750 NTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWF 791



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 162/332 (48%), Gaps = 8/332 (2%)

Query: 14  YSKLIAVMGKKGQ--TRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           Y+ ++ V GK G   +++A  L   M++SG  PD   YN LI++      +     +A  
Sbjct: 258 YNVILNVYGKMGMPWSKIA-GLVDSMKSSGVAPDLYTYNTLISSC----RRGSLYEEAAE 312

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            F++MK      P+ VTYN LL    ++R   +   + KE+  S  AP I TYN ++ AY
Sbjct: 313 VFEEMKAAG-FSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAY 371

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            ++G++ E   + S+M     KPD+ T+  L+  + K    D   +VF+ +  +  +P +
Sbjct: 372 ARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNI 431

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            TFN++I  +G      +   VF+++   +  P  +T+  ++ ++G     S    +F E
Sbjct: 432 CTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKE 491

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G   +  T N ++ AY   G   +A  ++    + GVTPD STY  +  A  +  +
Sbjct: 492 MKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGL 551

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
            E  +K+L  M+     PN+  +   L  +++
Sbjct: 552 WEQSEKVLAEMKDGRCKPNELTYCSLLHAYAN 583



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 162/333 (48%), Gaps = 14/333 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+   +      A  +F EM+ +G  PD   YNAL+  +  +R   +A+   
Sbjct: 290 DLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAM--- 346

Query: 70  LGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
               + +K ME     P+IVTYN L+ A A+   +D+   L  ++ +  + PD++TY  +
Sbjct: 347 ----EVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTL 402

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  + K G       V   M+   C+P+I TFN LI  +G R  F +M +VF+ +   + 
Sbjct: 403 LSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICEC 462

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P + T+N+++  +G+  +  +   VF++M    + P   T+  +I+ Y  C    +A  
Sbjct: 463 VPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMA 522

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           I+  +   G    +ST NA+L A    GL  +++ +     +    P+  TY  L  AY 
Sbjct: 523 IYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAY- 581

Query: 308 KANMKELVQKLLKRMEQ--NGIVPNKRFFLEAL 338
            AN KE V+++    E+  +GI+  +   L+ L
Sbjct: 582 -ANGKE-VERMSALAEEIYSGIIEPQAVLLKTL 612



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 150/317 (47%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI+   + G    AM L S+M   G +PD   Y  L++      +K      A+  F
Sbjct: 364 YNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGF----EKTGKDDYAMKVF 419

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M+ +  C+PNI T+N L++      N  ++  +F+E+      PDI T+N ++  +G+
Sbjct: 420 EEMR-VAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQ 478

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           NGM  E+  V   MK     P+  TFN LI +Y +   FD+   +++ ++ +   P L T
Sbjct: 479 NGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLST 538

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N+++    +  L  ++E V  +M   +  P+ +TY  ++  Y     V R   + +E+ 
Sbjct: 539 YNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIY 598

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
               + +   L  ++  Y  + L TE +  F      G +PD +T   +   Y +  M  
Sbjct: 599 SGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVS 658

Query: 314 LVQKLLKRMEQNGIVPN 330
              ++L  ++ +G  P+
Sbjct: 659 KTNEILNFIKDSGFTPS 675



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 1/225 (0%)

Query: 107 ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
           +L  +L    +  DIY Y  ++ AY  NG  +E   V  +++   C+P +IT+N++++ Y
Sbjct: 206 SLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVY 265

Query: 167 GKR-QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
           GK    + K+  +  S+  S   P L T+N++I +  +  L  +A  VF++M A  ++P 
Sbjct: 266 GKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPD 325

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
            +TY  ++ +YG       A E+  E+   G    + T N+++ AY  +GL  EA  L  
Sbjct: 326 KVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKS 385

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                G+ PD  TY  L   + K    +   K+ + M   G  PN
Sbjct: 386 QMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPN 430



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 121/309 (39%), Gaps = 85/309 (27%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  ++ +   ++ LI+   + G    AM ++  M ++G  PD S YNA++ A       
Sbjct: 493 KRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAA------- 545

Query: 63  AKALAKALGYFQKMKGME-----RCKPNIVTYNILLRACAQARNVDQVNAL--------- 108
              LA+   + Q  K +      RCKPN +TY  LL A A  + V++++AL         
Sbjct: 546 ---LARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGII 602

Query: 109 --------------------------FKELHESILAPDIYTYNGVMDAYGKNGMI----- 137
                                     F EL E   +PDI T N ++  YG+  M+     
Sbjct: 603 EPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNE 662

Query: 138 ------------------------------KEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
                                         ++ E +L  + +   KPDII+FN +I +Y 
Sbjct: 663 ILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYC 722

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
           +     +  ++F  +      P + T+N+ I +Y    +  +A  V + M   +  P+  
Sbjct: 723 RNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQN 782

Query: 228 TYECIITMY 236
           TY  +I  +
Sbjct: 783 TYNSLIDWF 791



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 94/182 (51%), Gaps = 9/182 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR-- 60
           +++ +  D    + ++++ G++        + + +++SG  P  + YN+L+  +  T   
Sbjct: 633 REQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHF 692

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           +K++ + + +      KGM   KP+I+++N ++ A  +   + + + +F E+ +  LAPD
Sbjct: 693 EKSEDILREI----IAKGM---KPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPD 745

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TYN  + +Y  + M  E   V+  M  N+CKP+  T+N LID + K    D+      
Sbjct: 746 VITYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWFCKLNRRDEANSFIS 805

Query: 181 SL 182
           +L
Sbjct: 806 NL 807


>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 857

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 164/345 (47%), Gaps = 6/345 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ+Q W   +  I++ +I ++G++G       +F EM ++G       Y A+I A+    
Sbjct: 124 MQRQIWCKPNEHIHTIMITLLGREGLLDKCREVFDEMPSNGVVRTVYSYTAIINAY---- 179

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAP 119
            +      +L     MK  ER  P+I+TYN ++ ACA+   + + +  LF E+    + P
Sbjct: 180 GRNGQFHASLELLNGMK-QERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQP 238

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D+ TYN ++ A    G+  E E V   M  +   PDI T++ L+ ++GK    +K+ ++ 
Sbjct: 239 DVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELL 298

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           + +      P + ++N ++  Y +     +A  VF++M A     +  TY  ++ +YG  
Sbjct: 299 REMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKH 358

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
                 R++F E+     D    T N +++ +   G   E   LF +     V P+  TY
Sbjct: 359 GRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTY 418

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           + L  A  K  + E  +K+L  M + G+VP+ + +   +E F  +
Sbjct: 419 EGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQA 463



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 154/342 (45%), Gaps = 30/342 (8%)

Query: 33  LFSEMRNSGCRPDPSVYNALI--TAHLHTRDKAKALAKALG----------------YFQ 74
           LF+EMR+ G +PD   YN L+   AH    D+A+ + + +                  F 
Sbjct: 227 LFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFG 286

Query: 75  KMKGMERCK------------PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           K+  +E+              P+I +YN+LL A A+  ++ +   +F+++  +    +  
Sbjct: 287 KLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAA 346

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY+ +++ YGK+G   ++  +   MK +   PD  T+N+LI  +G+   F ++  +F  +
Sbjct: 347 TYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDM 406

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + T+  +I   GK  L   A+ +   M      PS   Y  +I  +G     
Sbjct: 407 AEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALY 466

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A  +F+ ++++G +  V T N+++ A+   GL  EA+ +    +  G+  D  ++  +
Sbjct: 467 EEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGV 526

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            +A+ +    E   K    ME+    PN+      L  + S+
Sbjct: 527 IEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVLSIYCSA 568



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 150/326 (46%), Gaps = 11/326 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   YS L+   GK  +      L  EM   G  PD + YN L+ A+     +  ++ 
Sbjct: 272 VPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYA----ELGSIK 327

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A+G F++M+    C  N  TY++LL    +    D V  LF E+  S   PD  TYN +
Sbjct: 328 EAMGVFRQMQAA-GCVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNIL 386

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  +G+ G  KE+ ++   M     +P++ T+  LI + GK   ++  +++   L+H  E
Sbjct: 387 IQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKI---LLHMNE 443

Query: 188 KPTLPT---FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
           K  +P+   +  +I  +G+A L  +A  +F  M  +   P+  TY  +I  +        
Sbjct: 444 KGVVPSSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKE 503

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  I   +++ G    V + N ++EA+   G   EA   +         P+  T + +  
Sbjct: 504 AEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVLS 563

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
            Y  A + +  ++  + ++ +GI+P+
Sbjct: 564 IYCSAGLVDEGEEQFQEIKASGILPS 589



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 140/303 (46%), Gaps = 9/303 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKA 65
           + D   Y+ L+    + G  + AM +F +M+ +GC  + + Y+ L+  +  H R D  + 
Sbjct: 307 LPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRD 366

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L      F +MK +    P+  TYNIL++   +     +V  LF ++ E  + P++ TY 
Sbjct: 367 L------FLEMK-VSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYE 419

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
           G++ A GK G+ ++ + +L  M      P    +  +I+++G+   +++   +F ++   
Sbjct: 420 GLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNTMNEV 479

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              PT+ T+NS+I  + +  L  +AE +  +M          ++  +I  +        A
Sbjct: 480 GSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEA 539

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            + + E+ K   +    TL A+L  YC  GL  E +  F+     G+ P    Y ++   
Sbjct: 540 VKSYVEMEKANCEPNELTLEAVLSIYCSAGLVDEGEEQFQEIKASGILPSVMCYCMMLAL 599

Query: 306 YTK 308
           Y K
Sbjct: 600 YAK 602



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 127/264 (48%), Gaps = 1/264 (0%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           ++L  F+ M+    CKPN   + I++    +   +D+   +F E+  + +   +Y+Y  +
Sbjct: 116 RSLRLFKYMQRQIWCKPNEHIHTIMITLLGREGLLDKCREVFDEMPSNGVVRTVYSYTAI 175

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA-FDKMEQVFKSLMHSK 186
           ++AYG+NG       +L+ MK  +  P I+T+N +I++  +    ++ +  +F  + H  
Sbjct: 176 INAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEG 235

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + T+N+++       L  +AE VF+ M      P   TY  ++  +G  + + +  
Sbjct: 236 IQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVS 295

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+  E+   G    +++ N +LEAY   G   EA  +F      G   +++TY +L   Y
Sbjct: 296 ELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLY 355

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K    + V+ L   M+ +   P+
Sbjct: 356 GKHGRYDDVRDLFLEMKVSNTDPD 379



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 157/354 (44%), Gaps = 16/354 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D G Y+ LI V G+ G  +  + LF +M      P+   Y  LI A    +      AK 
Sbjct: 379 DAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFAC--GKGGLYEDAKK 436

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +      KG+    P+   Y  ++ A  QA   ++   +F  ++E    P + TYN ++ 
Sbjct: 437 ILLHMNEKGV---VPSSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSNPTVETYNSLIH 493

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A+ + G+ KE E++LSRM  +  K D+ +FN +I+++ +   +++  + +  +  +  +P
Sbjct: 494 AFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEP 553

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T  +++  Y  A L  + E  FQ++ A    PS + Y  ++ +Y   D ++ A  + 
Sbjct: 554 NELTLEAVLSIYCSAGLVDEGEEQFQEIKASGILPSVMCYCMMLALYAKNDRLNDAYNLI 613

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL-----LFENSHNMGVTPDSSTYKLLYK 304
           D +      M+VS ++ ++          E++      +F+  ++ G       Y  L +
Sbjct: 614 DAMIT----MRVSDIHQVIGQMIKGDFDDESNWQIVEYVFDKLNSEGCGLGMRFYNALLE 669

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLT 358
           A      +E   ++L    + G+ P    F ++   +S  +     G A T L+
Sbjct: 670 ALWCMFQRERAARVLNEASKRGLFP--ELFRKSKLVWSVDVHRMSEGGALTALS 721


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 155/322 (48%), Gaps = 5/322 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           ++S LI    K+G+   AM +FS+MR  G  PD   Y  +I        K+  +  A+ Y
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILC----KSGRVEDAMRY 431

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F++M   ER  P  + YN L+ +       D+   L  E+ +  +  D   +N ++D++ 
Sbjct: 432 FEQMID-ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHC 490

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G + E E +   M     KPDIIT++ LID Y      D+  ++  S++    KP   
Sbjct: 491 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCV 550

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N++I  Y K      A  +F++M +   +P  ITY  I+         + A+E++  +
Sbjct: 551 TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           ++ G  +++ST N +L   C N L  EA  +F+N     +  ++ T+ ++  A  K    
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 670

Query: 313 ELVQKLLKRMEQNGIVPNKRFF 334
           +  + L   +  NG+VP+ R +
Sbjct: 671 DEAKDLFAALSANGLVPDVRTY 692



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 150/328 (45%), Gaps = 7/328 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R  + +   YS +IA + K      AM + + M  +G  P+   YN+++    H    +
Sbjct: 227 DRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV----HGYCSS 282

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
               +A+G+ +KM   +  +P++VTYN L+    +     +   +F  + +  L P+I T
Sbjct: 283 GQPKEAIGFLKKMHS-DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITT 341

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++  Y   G + EM  +L  M  N   P+   F++LI +Y K+   D+   VF  + 
Sbjct: 342 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMR 401

Query: 184 HSKEKPTLPTFNSMI-INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                P   T+ ++I I     R++    Y F++M   + +P  I Y  +I      D  
Sbjct: 402 QQGLNPDTVTYGTVIGILCKSGRVEDAMRY-FEQMIDERLSPGNIVYNSLIHSLCIFDKW 460

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A+E+  E+   G  +     N++++++C  G   E++ LF+    +GV PD  TY  L
Sbjct: 461 DKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTL 520

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
              Y  A   +   KLL  M   G+ P+
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPD 548



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 134/319 (42%), Gaps = 6/319 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI      G+  L       +   G R D   +  L+      +  + A+   L   
Sbjct: 94  YGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRM 153

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE--SILAPDIYTYNGVMDAY 131
            ++     C PN+ +YNILL+         +   L + + +      PD+ +Y  V++ +
Sbjct: 154 TQLG----CIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G + +       M      P+++T++ +I +  K QA DK  +V  S++ +   P  
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+NS++  Y  +    +A    +KM +    P  +TY  ++         + AR++FD 
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           ++K G   +++T   +L+ Y   G   E   L +     G+ P+   + +L  AY K   
Sbjct: 330 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGK 389

Query: 312 KELVQKLLKRMEQNGIVPN 330
            +    +  +M Q G+ P+
Sbjct: 390 VDQAMLVFSKMRQQGLNPD 408



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 125/259 (48%), Gaps = 11/259 (4%)

Query: 83  KPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           + + + +  LL+  CA  R  D ++ + + + +    P++++YN ++         +E  
Sbjct: 123 RVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEAL 182

Query: 142 SVLSRMKSN--QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
            +L  M  +   C PD++++  +I+ + K    DK    +  ++     P + T++S+I 
Sbjct: 183 ELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIA 242

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL---G 256
              KA+   KA  V   M      P+  TY  I+  +GYC +  + +E    L K+   G
Sbjct: 243 ALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV--HGYCSS-GQPKEAIGFLKKMHSDG 299

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELV 315
            +  V T N++++  C NG  TEA  +F++    G+ P+ +TY  L + Y TK  + E+ 
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEM- 358

Query: 316 QKLLKRMEQNGIVPNKRFF 334
             LL  M +NGI PN   F
Sbjct: 359 HGLLDLMVRNGIHPNHYVF 377



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 134/311 (43%), Gaps = 13/311 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+  + K G+   A  +F  M   G +P+ + Y  L+  +        AL + 
Sbjct: 303 DVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYA----TKGALVEM 358

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            G    M   G+    PN   ++IL+ A A+   VDQ   +F ++ +  L PD  TY  V
Sbjct: 359 HGLLDLMVRNGIH---PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV 415

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +    K+G +++      +M   +  P  I +N LI S      +DK +++   ++    
Sbjct: 416 IGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGI 475

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
                 FNS+I ++ K     ++E +F  M  +   P  ITY  +I  Y     +  A +
Sbjct: 476 CLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATK 535

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL----LY 303
           +   +  +G      T N ++  YC      +A +LF    + GV+PD  TY +    L+
Sbjct: 536 LLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLF 595

Query: 304 KAYTKANMKEL 314
           +    A  KEL
Sbjct: 596 QTRRTAAAKEL 606



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 13/195 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI      G+   A  L + M + G +PD   YN LI  +     K   +  A
Sbjct: 513 DIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYC----KISRMEDA 568

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  F++M+      P+I+TYNI+L+   Q R       L+  + ES    ++ TYN ++ 
Sbjct: 569 LVLFREMES-SGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILH 627

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDII----TFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
              KN +  E      RM  N C  D+     TFN++I +  K    D+ + +F +L  +
Sbjct: 628 GLCKNNLTDEA----LRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSAN 683

Query: 186 KEKPTLPTFNSMIIN 200
              P + T++ M  N
Sbjct: 684 GLVPDVRTYSLMAEN 698



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 15/210 (7%)

Query: 144 LSRMKSNQCKPDIITFNLLIDS---YGKRQ-AFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
           ++R  +++  P++ T+ +LI S    G+    F  +  V K           P    +  
Sbjct: 79  MARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 138

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
           +    R     + V ++MT +   P+  +Y   I + G CD  +R++E  + L  +  D 
Sbjct: 139 D---KRTSDAMDIVLRRMTQLGCIPNVFSYN--ILLKGLCDE-NRSQEALELLQMMPDDG 192

Query: 260 KVSTLNAMLEAYCMNGLPTEADL--LFENSHNM---GVTPDSSTYKLLYKAYTKANMKEL 314
                + +     +NG   E DL   +   H M   G+ P+  TY  +  A  KA   + 
Sbjct: 193 GDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDK 252

Query: 315 VQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             ++L  M +NG++PN R +   +  + SS
Sbjct: 253 AMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282


>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
 gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
          Length = 1450

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 157/332 (47%), Gaps = 3/332 (0%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ ++ V  + G+      LF  MR  GC PD   +N LI A L   +    LA  L  
Sbjct: 258 VYNAMMGVYARSGKFNKVQELFDLMRERGCEPDLVSFNTLINARLKAGEMTPNLAIELLT 317

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +  G+   +P+I+TYN L+ AC++A N+++   +F ++      PD++TYN ++  YG
Sbjct: 318 EVRRSGL---RPDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMISVYG 374

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + G+  + E + + ++S    PD +++N  + ++ +    +K++ + + ++         
Sbjct: 375 RCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEM 434

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N+MI  YGK      A  +++ M +    P  ITY  +I   G  + +  A  +  E+
Sbjct: 435 TYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMSEM 494

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G    + T +A++  Y   G P EA+  F+     G  PD   Y ++   + + N  
Sbjct: 495 LNTGVKPTLRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVMLDIHLRFNEP 554

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           +      K M  +GI+P    +   L T  ++
Sbjct: 555 KRAMTFYKEMIHDGIMPEHSLYELMLRTLGNA 586



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 163/373 (43%), Gaps = 59/373 (15%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           + WY  +  + S ++AV+GK  Q  LA+ +F+       R +PSV N             
Sbjct: 215 RHWYSPNARMLSTILAVLGKANQEPLAVEVFT-------RAEPSVEN------------- 254

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
                                 +  YN ++   A++   ++V  LF  + E    PD+ +
Sbjct: 255 ---------------------TVKVYNAMMGVYARSGKFNKVQELFDLMRERGCEPDLVS 293

Query: 124 YNGVMDAYGKNGMIKEMESV--LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           +N +++A  K G +    ++  L+ ++ +  +PDIIT+N LI +  +    ++   VF  
Sbjct: 294 FNTLINARLKAGEMTPNLAIELLTEVRRSGLRPDIITYNTLISACSRASNLEEAVNVFDD 353

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++    +P L T+N+MI  YG+  L GKAE +F  + +  + P  ++Y   +  +    N
Sbjct: 354 MVAHHCEPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGN 413

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           V + ++I +E+ K+G      T N M+  Y   G    A  L+ +  + G  PD  TY +
Sbjct: 414 VEKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTV 473

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF-------------LEALETFSSSLAGS 348
           L  +  K N  E    ++  M   G+ P  R +             +EA ETF   L   
Sbjct: 474 LIDSLGKTNKIEEAAGMMSEMLNTGVKPTLRTYSALICGYAKAGKPVEAEETFDCML--- 530

Query: 349 QSGSAKTDLTRSL 361
           +SG+    L  S+
Sbjct: 531 RSGTRPDQLAYSV 543



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 149/326 (45%), Gaps = 7/326 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQ--TRLAMWLFSEMRNSGCRPDPSVYNALITAHLH 58
           + ++R    D   ++ LI    K G+    LA+ L +E+R SG RPD   YN LI+A   
Sbjct: 281 LMRERGCEPDLVSFNTLINARLKAGEMTPNLAIELLTEVRRSGLRPDIITYNTLISAC-- 338

Query: 59  TRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
              +A  L +A+  F  M     C+P++ TYN ++    +     +   LF +L      
Sbjct: 339 --SRASNLEEAVNVFDDMVA-HHCEPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFF 395

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD  +YN  + A+ + G +++++ +   M       D +T+N +I  YGK+   D   Q+
Sbjct: 396 PDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQGQNDLALQL 455

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           ++ +  S   P + T+  +I + GK     +A  +  +M      P+  TY  +I  Y  
Sbjct: 456 YRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMSEMLNTGVKPTLRTYSALICGYAK 515

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
                 A E FD + + G        + ML+ +     P  A   ++   + G+ P+ S 
Sbjct: 516 AGKPVEAEETFDCMLRSGTRPDQLAYSVMLDIHLRFNEPKRAMTFYKEMIHDGIMPEHSL 575

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQ 324
           Y+L+ +    AN  E + ++++ ME+
Sbjct: 576 YELMLRTLGNANKVEDIGRVVRDMEE 601



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 147/322 (45%), Gaps = 5/322 (1%)

Query: 3    KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
            +Q     +  +++ LI      G    A  +F+ M   G  P     N L+ A L    +
Sbjct: 807  RQSCITVNRKVWNALIEAYAASGCYERARAVFNTMMKDGPSPTVDSINGLLQA-LIVDGR 865

Query: 63   AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
             + L   +   Q + G +  K +I+   ++L A A+A N+ +V  ++  +  +   P ++
Sbjct: 866  LEELYVVVQELQDI-GFKISKSSIL---LMLDAFARAGNIFEVKKIYHGMKAAGYFPSMH 921

Query: 123  TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
             Y  +     +   ++++E++LS M+    KPD+  +N ++  Y     F K  Q+++ +
Sbjct: 922  LYRVMAQLLCRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIDDFRKTTQIYQRI 981

Query: 183  MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 +P   T+N +I+ Y +     +   +  +M  +   P   TY+ ++  +G    V
Sbjct: 982  KEDGLEPDEDTYNILIVMYCRDHRPKEGLVLMDEMRTVGLEPKLDTYKSLVASFGKQQLV 1041

Query: 243  SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             +A E+F+EL   G  +  S  + M++ Y  +G  ++A  LF    + GV P  +T  LL
Sbjct: 1042 EQAEELFEELQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMKDEGVEPTIATMHLL 1101

Query: 303  YKAYTKANMKELVQKLLKRMEQ 324
              +Y  +   +  +K+L  +++
Sbjct: 1102 MVSYGSSGQPQEAEKVLSNLKE 1123



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 134/291 (46%), Gaps = 17/291 (5%)

Query: 7    YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
            Y     +Y  +  ++ +  Q R    + SEM  +G +PD S++N+++  ++   D     
Sbjct: 916  YFPSMHLYRVMAQLLCRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIDD----F 971

Query: 67   AKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
             K    +Q++K  G+E   P+  TYNIL+    +     +   L  E+    L P + TY
Sbjct: 972  RKTTQIYQRIKEDGLE---PDEDTYNILIVMYCRDHRPKEGLVLMDEMRTVGLEPKLDTY 1028

Query: 125  NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
              ++ ++GK  ++++ E +   ++S  CK D   +++++  Y    +  K +++F  +  
Sbjct: 1029 KSLVASFGKQQLVEQAEELFEELQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMKD 1088

Query: 185  SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY----GYCD 240
               +PT+ T + ++++YG +    +AE V   +       S + Y  +I  Y     Y  
Sbjct: 1089 EGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETDANLSTLPYSSVIDAYVRNGDYNA 1148

Query: 241  NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
             + + +++ +E   L  D ++ T    + A  ++   +EA LL     + G
Sbjct: 1149 GIQKLKQVKEE--GLEPDHRIWT--CFIRAASLSQHTSEAILLLNALRDTG 1195



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/270 (18%), Positives = 125/270 (46%), Gaps = 2/270 (0%)

Query: 85   NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
            N   +N L+ A A +   ++  A+F  + +   +P + + NG++ A   +G ++E+  V+
Sbjct: 814  NRKVWNALIEAYAASGCYERARAVFNTMMKDGPSPTVDSINGLLQALIVDGRLEELYVVV 873

Query: 145  SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
              ++    K    +  L++D++ +     ++++++  +  +   P++  +  M     + 
Sbjct: 874  QELQDIGFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPSMHLYRVMAQLLCRG 933

Query: 205  RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
            +     E +  +M    + P    +  ++ MY   D+  +  +I+  + + G +    T 
Sbjct: 934  KQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTY 993

Query: 265  NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
            N ++  YC +  P E  +L +    +G+ P   TYK L  ++ K  + E  ++L + ++ 
Sbjct: 994  NILIVMYCRDHRPKEGLVLMDEMRTVGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQS 1053

Query: 325  NGIVPNKRFFLEALETFSSSLAGSQSGSAK 354
             G   ++ F+   ++ + +S  GS S + +
Sbjct: 1054 TGCKLDRSFYHIMMKIYRNS--GSHSKAQR 1081



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 126/300 (42%), Gaps = 3/300 (1%)

Query: 46   PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQV 105
            PS++   + A L  R K     +A+    +  G    KP++  +N +L+      +  + 
Sbjct: 918  PSMHLYRVMAQLLCRGKQVRDVEAMLSEMEEAGF---KPDLSIWNSVLKMYVAIDDFRKT 974

Query: 106  NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
              +++ + E  L PD  TYN ++  Y ++   KE   ++  M++   +P + T+  L+ S
Sbjct: 975  TQIYQRIKEDGLEPDEDTYNILIVMYCRDHRPKEGLVLMDEMRTVGLEPKLDTYKSLVAS 1034

Query: 166  YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
            +GK+Q  ++ E++F+ L  +  K     ++ M+  Y  +    KA+ +F  M      P+
Sbjct: 1035 FGKQQLVEQAEELFEELQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMKDEGVEPT 1094

Query: 226  FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
              T   ++  YG       A ++   L +   ++     +++++AY  NG         +
Sbjct: 1095 IATMHLLMVSYGSSGQPQEAEKVLSNLKETDANLSTLPYSSVIDAYVRNGDYNAGIQKLK 1154

Query: 286  NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 345
                 G+ PD   +    +A + +        LL  +   G     R   E  E   S+L
Sbjct: 1155 QVKEEGLEPDHRIWTCFIRAASLSQHTSEAILLLNALRDTGFDLPIRLLTEKPEPLVSAL 1214



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 122/273 (44%), Gaps = 29/273 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I+V G+ G +  A  LF+++ + G  PD   YN+ + A              
Sbjct: 362 DLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFARE---------- 411

Query: 70  LGYFQKMKGMERCKPNI--------VTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            G  +K+K +  C+  +        +TYN ++    +    D    L++++  S   PD+
Sbjct: 412 -GNVEKVKDI--CEEMVKIGFGKDEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDV 468

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TY  ++D+ GK   I+E   ++S M +   KP + T++ LI  Y K     + E+ F  
Sbjct: 469 ITYTVLIDSLGKTNKIEEAAGMMSEMLNTGVKPTLRTYSALICGYAKAGKPVEAEETFDC 528

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++ S  +P    ++ M+  + +     +A   +++M      P    YE ++   G  + 
Sbjct: 529 MLRSGTRPDQLAYSVMLDIHLRFNEPKRAMTFYKEMIHDGIMPEHSLYELMLRTLGNANK 588

Query: 242 VSRAREIFDELSKLGKDM-KVSTLNAMLEAYCM 273
           V       +++ ++ +DM +V  +N    +Y +
Sbjct: 589 V-------EDIGRVVRDMEEVCGMNPQAISYIL 614



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 141/344 (40%), Gaps = 34/344 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI    K G+   A   F  M  SG RPD   Y+ ++  HL   +  +A+      F
Sbjct: 506 YSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVMLDIHLRFNEPKRAMT-----F 560

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI-LAPDIYTYNGVMDAYG 132
            K    +   P    Y ++LR    A  V+ +  + +++ E   + P   +Y  V     
Sbjct: 561 YKEMIHDGIMPEHSLYELMLRTLGNANKVEDIGRVVRDMEEVCGMNPQAISYILV----- 615

Query: 133 KNGMIKEMESVLSRMKSNQCKPD---IITFNLLIDSYGKRQ-AFDKMEQVFKSLMHSKEK 188
           K     E   +L R  S++ + D   +++      S G+   A D +E + +    S + 
Sbjct: 616 KGDCYDEAAKMLRRAISDRYEIDRENLLSILSSYSSSGRHSVALDLLELLKEHTPRSSQM 675

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
            T     ++++   KA+    A   +     + +T SF  +E +I             E+
Sbjct: 676 IT----EALVVMLCKAQQLDTALKEYSNSRELGFTGSFTMFEALI-------QCCLENEL 724

Query: 249 FDELSKLGKDMKVSTLNA-------MLEAYCMNGLPTEADLLFENSHNMG-VTPDSSTYK 300
           F E S++  DM+   + A       M+  YC  G P  A  L + +   G V  + S Y 
Sbjct: 725 FTEASQVFSDMRFCGIKASECLYQSMMLLYCKMGFPETAHHLIDLTETDGTVLNNISVYV 784

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            + +AY +  + +  + +   M Q+ I  N++ +   +E +++S
Sbjct: 785 DVIEAYGRLKLWQKAESVAGNMRQSCITVNRKVWNALIEAYAAS 828



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/215 (18%), Positives = 94/215 (43%), Gaps = 6/215 (2%)

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           +I  Y  V++AYG+  + ++ ESV   M+ +    +   +N LI++Y     +++   VF
Sbjct: 779 NISVYVDVIEAYGRLKLWQKAESVAGNMRQSCITVNRKVWNALIEAYAASGCYERARAVF 838

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAE---YVFQKMTAMKYTPSFITYECIITMY 236
            ++M     PT+ + N ++       + G+ E    V Q++  + +  S  +   ++  +
Sbjct: 839 NTMMKDGPSPTVDSINGLL---QALIVDGRLEELYVVVQELQDIGFKISKSSILLMLDAF 895

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
               N+   ++I+  +   G    +     M +  C      + + +       G  PD 
Sbjct: 896 ARAGNIFEVKKIYHGMKAAGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSEMEEAGFKPDL 955

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           S +  + K Y   +      ++ +R++++G+ P++
Sbjct: 956 SIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDE 990



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 65/144 (45%)

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           +  +  +I  YG+ +L  KAE V   M     T +   +  +I  Y       RAR +F+
Sbjct: 780 ISVYVDVIEAYGRLKLWQKAESVAGNMRQSCITVNRKVWNALIEAYAASGCYERARAVFN 839

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            + K G    V ++N +L+A  ++G   E  ++ +   ++G     S+  L+  A+ +A 
Sbjct: 840 TMMKDGPSPTVDSINGLLQALIVDGRLEELYVVVQELQDIGFKISKSSILLMLDAFARAG 899

Query: 311 MKELVQKLLKRMEQNGIVPNKRFF 334
               V+K+   M+  G  P+   +
Sbjct: 900 NIFEVKKIYHGMKAAGYFPSMHLY 923


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 155/322 (48%), Gaps = 5/322 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           ++S LI    K+G+   AM +FS+MR  G  PD   Y  +I        K+  +  A+ Y
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILC----KSGRVEDAMRY 431

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F++M   ER  P  + YN L+ +       D+   L  E+ +  +  D   +N ++D++ 
Sbjct: 432 FEQMID-ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHC 490

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G + E E +   M     KPDIIT++ LID Y      D+  ++  S++    KP   
Sbjct: 491 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCV 550

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N++I  Y K      A  +F++M +   +P  ITY  I+         + A+E++  +
Sbjct: 551 TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           ++ G  +++ST N +L   C N L  EA  +F+N     +  ++ T+ ++  A  K    
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 670

Query: 313 ELVQKLLKRMEQNGIVPNKRFF 334
           +  + L   +  NG+VP+ R +
Sbjct: 671 DEAKDLFAALSANGLVPDVRTY 692



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 150/328 (45%), Gaps = 7/328 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R  + +   YS +IA + K      AM + + M  +G  P+   YN+++    H    +
Sbjct: 227 DRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV----HGYCSS 282

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
               +A+G+ +KM   +  +P++VTYN L+    +     +   +F  + +  L P+I T
Sbjct: 283 GQPKEAIGFLKKMHS-DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITT 341

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++  Y   G + EM  +L  M  N   P+   F++LI +Y K+   D+   VF  + 
Sbjct: 342 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMR 401

Query: 184 HSKEKPTLPTFNSMI-INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                P   T+ ++I I     R++    Y F++M   + +P  I Y  +I      D  
Sbjct: 402 QQGLNPDTVTYGTVIGILCKSGRVEDAMRY-FEQMIDERLSPGNIVYNSLIHSLCIFDKW 460

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A+E+  E+   G  +     N++++++C  G   E++ LF+    +GV PD  TY  L
Sbjct: 461 DKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTL 520

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
              Y  A   +   KLL  M   G+ P+
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPD 548



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 134/319 (42%), Gaps = 6/319 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI      G+  L       +   G R D   +  L+      +  + A+   L   
Sbjct: 94  YGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRM 153

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE--SILAPDIYTYNGVMDAY 131
            ++     C PN+ +YNILL+         +   L + + +      PD+ +Y  V++ +
Sbjct: 154 TQLG----CIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G + +       M      P+++T++ +I +  K QA DK  +V  S++ +   P  
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+NS++  Y  +    +A    +KM +    P  +TY  ++         + AR++FD 
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           ++K G   +++T   +L+ Y   G   E   L +     G+ P+   + +L  AY K   
Sbjct: 330 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGK 389

Query: 312 KELVQKLLKRMEQNGIVPN 330
            +    +  +M Q G+ P+
Sbjct: 390 VDQAMLVFSKMRQQGLNPD 408



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 125/259 (48%), Gaps = 11/259 (4%)

Query: 83  KPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           + + + +  LL+  CA  R  D ++ + + + +    P++++YN ++         +E  
Sbjct: 123 RVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEAL 182

Query: 142 SVLSRMKSN--QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
            +L  M  +   C PD++++  +I+ + K    DK    +  ++     P + T++S+I 
Sbjct: 183 ELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIA 242

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL---G 256
              KA+   KA  V   M      P+  TY  I+  +GYC +  + +E    L K+   G
Sbjct: 243 ALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV--HGYCSS-GQPKEAIGFLKKMHSDG 299

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELV 315
            +  V T N++++  C NG  TEA  +F++    G+ P+ +TY  L + Y TK  + E+ 
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEM- 358

Query: 316 QKLLKRMEQNGIVPNKRFF 334
             LL  M +NGI PN   F
Sbjct: 359 HGLLDLMVRNGIHPNHYVF 377



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 134/311 (43%), Gaps = 13/311 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+  + K G+   A  +F  M   G +P+ + Y  L+  +        AL + 
Sbjct: 303 DVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYA----TKGALVEM 358

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            G    M   G+    PN   ++IL+ A A+   VDQ   +F ++ +  L PD  TY  V
Sbjct: 359 HGLLDLMVRNGIH---PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV 415

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +    K+G +++      +M   +  P  I +N LI S      +DK +++   ++    
Sbjct: 416 IGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGI 475

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
                 FNS+I ++ K     ++E +F  M  +   P  ITY  +I  Y     +  A +
Sbjct: 476 CLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATK 535

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL----LY 303
           +   +  +G      T N ++  YC      +A +LF    + GV+PD  TY +    L+
Sbjct: 536 LLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLF 595

Query: 304 KAYTKANMKEL 314
           +    A  KEL
Sbjct: 596 QTRRTAAAKEL 606



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 13/195 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI      G+   A  L + M + G +PD   YN LI  +     K   +  A
Sbjct: 513 DIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYC----KISRMEDA 568

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  F++M+      P+I+TYNI+L+   Q R       L+  + ES    ++ TYN ++ 
Sbjct: 569 LVLFREMES-SGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILH 627

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDII----TFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
              KN +  E      RM  N C  D+     TFN++I +  K    D+ + +F +L  +
Sbjct: 628 GLCKNNLTDEA----LRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSAN 683

Query: 186 KEKPTLPTFNSMIIN 200
              P + T++ M  N
Sbjct: 684 GLVPDVRTYSLMAEN 698



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 15/210 (7%)

Query: 144 LSRMKSNQCKPDIITFNLLIDS---YGKRQ-AFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
           ++R  +++  P++ T+ +LI S    G+    F  +  V K           P    +  
Sbjct: 79  MARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 138

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
           +    R     + V ++MT +   P+  +Y   I + G CD  +R++E  + L  +  D 
Sbjct: 139 D---KRTSDAMDIVLRRMTQLGCIPNVFSYN--ILLKGLCDE-NRSQEALELLQMMPDDG 192

Query: 260 KVSTLNAMLEAYCMNGLPTEADL--LFENSHNM---GVTPDSSTYKLLYKAYTKANMKEL 314
                + +     +NG   E DL   +   H M   G+ P+  TY  +  A  KA   + 
Sbjct: 193 GDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDK 252

Query: 315 VQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             ++L  M +NG++PN R +   +  + SS
Sbjct: 253 AMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 158/323 (48%), Gaps = 5/323 (1%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           ++ +G++  L +V  + G    A   FS MRN    P     N L    LH   K+    
Sbjct: 157 VSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFL----LHRLSKSGNGQ 212

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
               +F  M G     P++ TYN+++    +  +++    LF ++ E  L+PD+ TYN +
Sbjct: 213 LVRKFFNDMIG-AGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSL 271

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D YGK G ++E+ S+ + MK   C PDIIT+N LI+ Y K +   +  + F  + ++  
Sbjct: 272 IDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGL 331

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           KP + T++++I  + K  +   A  +   M      P+  TY  +I       N++ A +
Sbjct: 332 KPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWK 391

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + +++ + G  + + T  A+L+  C  G   EA+ +F +    G++P+   Y  L   Y 
Sbjct: 392 LLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYI 451

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           KA   E   K+LK+M +  I P+
Sbjct: 452 KAERMEDAMKILKQMTECNIKPD 474



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 148/323 (45%), Gaps = 9/323 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI   GK G       LF+EM++ GC PD   YN LI  +     K + + +A
Sbjct: 264 DVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYC----KFEKMPRA 319

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
             YF +MK     KPN+VTY+ L+ A  +   +     L  ++  + L P+ +TY  ++D
Sbjct: 320 FEYFSEMKN-NGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLID 378

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A  K G + E   +L+ M     K +I+T+  L+D   K     + E+VF+S++     P
Sbjct: 379 ANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISP 438

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRARE 247
               + +++  Y KA     A  + ++MT     P  I Y  II  +G+C    +   + 
Sbjct: 439 NQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSII--WGHCSQRKLEETKL 496

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           I +E+   G          +++AY   G  ++A   F+   ++GV     TY +L     
Sbjct: 497 ILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLC 556

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           +A + EL      RM   G+ PN
Sbjct: 557 EAGIVELAVDYFCRMLSLGLQPN 579



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 148/355 (41%), Gaps = 44/355 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI    K+G  + A+ L  +MR +G  P+   Y +LI A+     KA  L +A    
Sbjct: 338 YSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANC----KAGNLTEAWKLL 393

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             M      K NIVTY  LL    +A  + +   +F+ + +  ++P+   Y  ++  Y K
Sbjct: 394 NDML-QAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIK 452

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              +++   +L +M     KPD+I +  +I  +  ++  ++ + + +  M S+     P 
Sbjct: 453 AERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEE-MKSRGISANPV 511

Query: 194 FNSMIIN-YGKARLQGKAEYVFQKMTAMKYTPSFITYECI-------------------- 232
            ++ II+ Y KA     A   FQ+M  +    + +TY C+                    
Sbjct: 512 ISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTY-CVLIDGLCEAGIVELAVDYFCR 570

Query: 233 ---------ITMY-----GYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
                    + +Y     G C N  +  A+++FDE+   G    ++   A+++    +G 
Sbjct: 571 MLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGN 630

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             EA +L      + +  D   Y  L   +++       +K    M + GI+P +
Sbjct: 631 LQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEE 685



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 104/249 (41%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C      +++L     +   +++ N  F  +      P   + N ++    K+G  + + 
Sbjct: 156 CVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVR 215

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
              + M      P + T+N++ID   K    +   ++F  +      P + T+NS+I  Y
Sbjct: 216 KFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGY 275

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
           GK     +   +F +M  +   P  ITY  +I  Y   + + RA E F E+   G    V
Sbjct: 276 GKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNV 335

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T + +++A+C  G+   A  L  +    G+ P+  TY  L  A  KA       KLL  
Sbjct: 336 VTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLND 395

Query: 322 MEQNGIVPN 330
           M Q G+  N
Sbjct: 396 MLQAGVKLN 404



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 8/190 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K R   A+  I + +I    K G++  A+  F EM++ G       Y  LI        +
Sbjct: 502 KSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLC----E 557

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A  +  A+ YF +M  +   +PN+  Y  L+        ++    LF E+    + PDI 
Sbjct: 558 AGIVELAVDYFCRMLSLG-LQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDIT 616

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            +  ++D   K+G ++E   ++SRM     + D+  +  L+  + +     +  + F  +
Sbjct: 617 AFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEM 676

Query: 183 MHSKEKPTLP 192
           +   EK  LP
Sbjct: 677 I---EKGILP 683



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 83/213 (38%), Gaps = 4/213 (1%)

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
           N C      F++L   + +    ++  + F  + + +  P   + N ++    K+     
Sbjct: 154 NICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQL 213

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
               F  M      PS  TY  +I       ++  +R +F ++ ++G    V T N++++
Sbjct: 214 VRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLID 273

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
            Y   G   E   LF    ++G  PD  TY  L   Y K        +    M+ NG+ P
Sbjct: 274 GYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKP 333

Query: 330 NKRFFLEALETFSSSLAGSQSGSAK--TDLTRS 360
           N   +   ++ F     G   G+ K   D+ R+
Sbjct: 334 NVVTYSTLIDAFCKE--GMMQGAIKLLXDMRRT 364


>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
          Length = 795

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 152/305 (49%), Gaps = 7/305 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+   ++G  R A  +F EM+ +G  PD   +N+L+  +     KA+   +A
Sbjct: 254 DRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVY----GKARKHEEA 309

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +G  ++M+    C P++VTYN L+ A  +   +++   L +E+    + PD+ TY  ++ 
Sbjct: 310 IGVLKRMENAG-CTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLIS 368

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              + G I    +  S M  N C P++ T+N LI  +G R  F +M  VF  L  +   P
Sbjct: 369 GLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVP 428

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+N+++  +G+  L  +   VF++M    Y P   TY  +I+ Y  C    +A EI+
Sbjct: 429 DVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIY 488

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             + + G    +ST NA+L A    G   +A+ LF    +    PD  +Y  L  AY  A
Sbjct: 489 KRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAY--A 546

Query: 310 NMKEL 314
           N K+L
Sbjct: 547 NAKKL 551



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 150/321 (46%), Gaps = 4/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L++   + G+ R A+ +F  M + G +P    YN +  A+       K +  A
Sbjct: 183 DASAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVV-A 241

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L    K  G+ER +    TYN L+  C +     +   +F E+  +   PD  T+N ++D
Sbjct: 242 LVDSMKEDGIERDR---YTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLD 298

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK    +E   VL RM++  C P ++T+N LI +Y K    ++  ++ + +     KP
Sbjct: 299 VYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKP 358

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ ++I    +      A   + +M     +P+  TY  +I ++G     +    +F
Sbjct: 359 DVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVF 418

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D+L   G    V T N +L  +  NGL +E   +F+     G  P+  TY  L  +Y++ 
Sbjct: 419 DDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRC 478

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
            + +   ++ KRM + GI P+
Sbjct: 479 GLFDQAMEIYKRMIEAGIYPD 499



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 148/300 (49%), Gaps = 6/300 (2%)

Query: 44  PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNV 102
           PD S Y AL++A      +A     A+  FQ+M      +P +VTYN++  A ++ +   
Sbjct: 182 PDASAYTALVSAF----SRAGRFRDAVAVFQRMVD-GGVQPALVTYNVVFHAYSKMSVPW 236

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
            +V AL   + E  +  D YTYN ++    + G+ +E   V   MK+   +PD +TFN L
Sbjct: 237 KEVVALVDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSL 296

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           +D YGK +  ++   V K + ++   P++ T+NS+I  Y K  L  +A  + Q+M     
Sbjct: 297 LDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGM 356

Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
            P  +TY  +I+       +  A   + E+ + G    + T NA+++ + + G  TE   
Sbjct: 357 KPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMA 416

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           +F++  + G  PD  T+  L   + +  +   V  + K M++ G +P +  ++  + ++S
Sbjct: 417 VFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYS 476



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 158/403 (39%), Gaps = 75/403 (18%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+ + + G+   A+  +SEM  +GC P+   YNALI  H   R K     + 
Sbjct: 359 DVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLH-GVRGK---FTEM 414

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH---------------- 113
           +  F  ++      P++VT+N LL    Q     +V+ +FKE+                 
Sbjct: 415 MAVFDDLRSAGYV-PDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLIS 473

Query: 114 -------------------ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
                              E+ + PDI TYN V+ A  + G  ++ E + + M    CKP
Sbjct: 474 SYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKP 533

Query: 155 DIITFNLLIDSYGKRQAFDKM-----------------------------------EQVF 179
           D ++++ L+ +Y   +  DKM                                   E+ F
Sbjct: 534 DELSYSSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPETEKAF 593

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           + L   +    +   N+M+  YGK ++  K E V   M       S  TY  ++ MY   
Sbjct: 594 QELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMHMYSRL 653

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            +  +   I  E+   G      + N ++ AY   G   EA  LF      GV PD  TY
Sbjct: 654 GDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTY 713

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            +  K+Y    M E    L++ +   G  PN+R F   L+ +S
Sbjct: 714 NIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSILQGYS 756



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 139/310 (44%), Gaps = 13/310 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  YI +   Y  LI+   + G    AM ++  M  +G  PD S YNA+++A      +
Sbjct: 457 KKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALA----R 512

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
                +A   F +M   + CKP+ ++Y+ LL A A A+ +D++    K L E I A  I 
Sbjct: 513 GGRWEQAEKLFAEMVDRD-CKPDELSYSSLLHAYANAKKLDKM----KTLSEDIYAERIE 567

Query: 123 TYNGVMDAY----GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
            +N ++        K   + E E     ++  +C  DI   N ++  YGK +   K+E+V
Sbjct: 568 RHNWLVKTLVLVNNKVNNLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEV 627

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
              +M +    +  T+NS++  Y +     K E +  ++ +    P   +Y  +I  YG 
Sbjct: 628 LSLMMENSINHSAATYNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGR 687

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              +  A  +F E+   G    + T N  +++Y  N +  EA  L       G  P+  T
Sbjct: 688 KGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERT 747

Query: 299 YKLLYKAYTK 308
           +  + + Y++
Sbjct: 748 FNSILQGYSR 757



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 106/239 (44%), Gaps = 5/239 (2%)

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +R  A+A  + + +A+     E+  APD   Y  ++ A+ + G  ++  +V  RM     
Sbjct: 160 IRVFARAGCLAEASAIL----EAAPAPDASAYTALVSAFSRAGRFRDAVAVFQRMVDGGV 215

Query: 153 KPDIITFNLLIDSYGKRQA-FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
           +P ++T+N++  +Y K    + ++  +  S+     +    T+N++I    +  L  +A 
Sbjct: 216 QPALVTYNVVFHAYSKMSVPWKEVVALVDSMKEDGIERDRYTYNTLISCCRRRGLHREAA 275

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
            VF +M A  + P  +T+  ++ +YG       A  +   +   G    V T N+++ AY
Sbjct: 276 QVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAY 335

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +GL  EA  L +     G+ PD  TY  L     +    +        M +NG  PN
Sbjct: 336 VKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPN 394



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 5/134 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+ +  + G       + +E+++SG RPD   YN +I A+     +   + +A   F
Sbjct: 643 YNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAY----GRKGQMKEASRLF 698

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +MK     KP+IVTYNI +++       ++   L + L      P+  T+N ++  Y +
Sbjct: 699 SEMK-CSGVKPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSILQGYSR 757

Query: 134 NGMIKEMESVLSRM 147
           +G + E +S LS +
Sbjct: 758 HGRMVEAKSFLSNL 771


>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 804

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 168/395 (42%), Gaps = 75/395 (18%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L++   K G+   A+ +F EMR  GC+P+   +NALI  H   R K    A+ 
Sbjct: 368 DVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMH-GNRGK---FAEM 423

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH---------------- 113
           +  F  +K +  C P+IVT+N LL    Q     QV+ +FKE+                 
Sbjct: 424 MKVFDDIK-LCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLIS 482

Query: 114 -------------------ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
                              E+ + PD+ TYN V+ A  + G+ ++ E VL+ M+  +CKP
Sbjct: 483 AYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKP 542

Query: 155 DIITFNLLIDSYGKRQAFDKM-----------------------------------EQVF 179
           + ++++ L+ +Y   +  ++M                                   E+ F
Sbjct: 543 NELSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAF 602

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             L      P + T N+M+  YG+ ++  KA  +   M   ++TPS  TY  ++ MY   
Sbjct: 603 LELRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRS 662

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           +N  ++ EI  E+ + G      + N ++ AYC NG   EA  +F    +  + PD  TY
Sbjct: 663 ENFQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTY 722

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
                 Y   +M      +++ M + G  P++  +
Sbjct: 723 NTFIATYAADSMFAEAIDVVRYMIKQGCKPDQNTY 757



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 161/345 (46%), Gaps = 17/345 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH---TRDKAKAL 66
           D   Y+ LI      G+ R A+ LF++M+  GC P    YN ++  +           AL
Sbjct: 192 DVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMPWSNVTAL 251

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            +A+    + +G+    P++ TYN L+  C +    ++   LF+++      PD  TYN 
Sbjct: 252 VEAM----RSRGV---APDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNA 304

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++D +GK+   +E   VL  M++N   P  +T+N LI +Y K    ++   +   ++H  
Sbjct: 305 LLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKG 364

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            KP + T+ +++  + KA     A  VF +M A+   P+  T+  +I M+G     +   
Sbjct: 365 IKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMM 424

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           ++FD++        + T N +L  +  NG+ ++   +F+     G   +  T+  L  AY
Sbjct: 425 KVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAY 484

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSG 351
           ++    +    + K M + G+VP+       L T+++ LA    G
Sbjct: 485 SRCGSFDQAMAVYKSMLEAGVVPD-------LSTYNAVLAALARG 522



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 156/335 (46%), Gaps = 14/335 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMW-----LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           Y+ ++ V GK G      W     L   MR+ G  PD   YN LI+       +     +
Sbjct: 231 YNVVLNVYGKMGMP----WSNVTALVEAMRSRGVAPDLYTYNTLISCC----RRGSLYEE 282

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A+  FQ+MK +E   P+ VTYN LL    ++R   +   + +E+  +  +P   TYN ++
Sbjct: 283 AVHLFQQMK-LEGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLI 341

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            AY K G+++E   + ++M     KPD+ T+  L+  + K    D   QVF  +     K
Sbjct: 342 SAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCK 401

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P + TFN++I  +G      +   VF  +     +P  +T+  ++ ++G     S+   I
Sbjct: 402 PNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGI 461

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F E+ + G   +  T N ++ AY   G   +A  ++++    GV PD STY  +  A  +
Sbjct: 462 FKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALAR 521

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
             + E  +K+L  ME     PN+  +   L  +++
Sbjct: 522 GGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYAN 556



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 161/353 (45%), Gaps = 40/353 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI+   K G    A+ L ++M + G +PD   Y  L++      +KA     A+  F
Sbjct: 337 YNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGF----EKAGKDDFAIQVF 392

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+ +  CKPNI T+N L++         ++  +F ++     +PDI T+N ++  +G+
Sbjct: 393 LEMRAVG-CKPNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQ 451

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           NGM  ++  +   MK      +  TFN LI +Y +  +FD+   V+KS++ +   P L T
Sbjct: 452 NGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLST 511

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR----AREI- 248
           +N+++    +  L  ++E V  +M   +  P+ ++Y  ++  Y     + R    A EI 
Sbjct: 512 YNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNAFAEEIY 571

Query: 249 ------------------------------FDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
                                         F EL + G    ++TLNAML  Y    +  
Sbjct: 572 SGSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNAMLSIYGRKQMVA 631

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           +A  +    H    TP  +TY  L   Y+++   +  +++L+ + + G+ P++
Sbjct: 632 KAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDR 684



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 147/312 (47%), Gaps = 7/312 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R    D   Y+ LI+   +      A+ LF +M+  G  PD   YNAL    L    K
Sbjct: 256 RSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNAL----LDVFGK 311

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           ++   +A+   Q+M+      P  VTYN L+ A A+   +++   L  ++    + PD++
Sbjct: 312 SRRPQEAMKVLQEMEA-NGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVF 370

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++  + K G       V   M++  CKP+I TFN LI  +G R  F +M +VF  +
Sbjct: 371 TYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDI 430

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 P + T+N+++  +G+  +  +   +F++M    +     T+  +I+ Y  C + 
Sbjct: 431 KLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSF 490

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  ++  + + G    +ST NA+L A    GL  +++ +     +    P+  +Y  L
Sbjct: 491 DQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSL 550

Query: 303 YKAYTKANMKEL 314
             AY  AN KE+
Sbjct: 551 LHAY--ANGKEI 560



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 148/327 (45%), Gaps = 19/327 (5%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  ++A+   ++ LI+   + G    AM ++  M  +G  PD S YNA++ A       
Sbjct: 466 KRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAA------- 518

Query: 63  AKALAKALGYFQKMKGME-----RCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
              LA+   + Q  K +      RCKPN ++Y+ LL A A  + ++++NA  +E++   +
Sbjct: 519 ---LARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSV 575

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
                    ++    K+ ++ E E     ++     PDI T N ++  YG++Q   K  +
Sbjct: 576 ETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHE 635

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           +   +  ++  P+L T+NS++  Y ++    K+E + +++      P  I+Y  +I  Y 
Sbjct: 636 ILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNTVI--YA 693

Query: 238 YCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           YC N  +  A  IF E+        V T N  +  Y  + +  EA  +       G  PD
Sbjct: 694 YCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSMFAEAIDVVRYMIKQGCKPD 753

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRM 322
            +TY  +   Y K + +      +K +
Sbjct: 754 QNTYNSIVDWYCKLDQRHEANSFVKNL 780



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 134/293 (45%), Gaps = 15/293 (5%)

Query: 52  LITAHLHTRDKAKALAKALGYFQK----MKGMERCKPNIVTYN--------ILLRACAQA 99
           L++ H H       + KALG+  K    +      + N    N        ++++   +A
Sbjct: 112 LLSDHPHPASDILGIIKALGFSNKCDLALAVFHWVRTNNSNTNLFSSSAIPVIIKILGKA 171

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
             V    +L   L    +  D+Y Y  +++AY  +G  ++  ++ ++M+ + C P +IT+
Sbjct: 172 GRVSSAASLLLALQNDGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITY 231

Query: 160 NLLIDSYGKR-QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           N++++ YGK    +  +  + +++      P L T+N++I    +  L  +A ++FQ+M 
Sbjct: 232 NVVLNVYGKMGMPWSNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMK 291

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
              +TP  +TY  ++ ++G       A ++  E+   G      T N+++ AY   GL  
Sbjct: 292 LEGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLE 351

Query: 279 EA-DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           EA DL  +  H  G+ PD  TY  L   + KA   +   ++   M   G  PN
Sbjct: 352 EALDLKTQMVHK-GIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPN 403



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 118/292 (40%), Gaps = 30/292 (10%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK--- 64
           + D   Y+ ++A + + G    +  + +EM +  C+P+   Y++L+ A+ + ++  +   
Sbjct: 506 VPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNA 565

Query: 65  --------------ALAKALGYFQKMKGM----ERC---------KPNIVTYNILLRACA 97
                          L K L        +    ER           P+I T N +L    
Sbjct: 566 FAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNAMLSIYG 625

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           + + V + + +   +HE+   P + TYN +M  Y ++   ++ E +L  +     KPD I
Sbjct: 626 RKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRI 685

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           ++N +I +Y +     +  ++F  +  S   P + T+N+ I  Y    +  +A  V + M
Sbjct: 686 SYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSMFAEAIDVVRYM 745

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
                 P   TY  I+  Y   D    A      LS L   +     + +LE
Sbjct: 746 IKQGCKPDQNTYNSIVDWYCKLDQRHEANSFVKNLSNLDPHVSKEEESRLLE 797


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 150/300 (50%), Gaps = 11/300 (3%)

Query: 34  FSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 93
           F +MR     P P   NAL    LH   K      +  +F+ M G    K ++ TYNI++
Sbjct: 9   FLKMRKFRVFPKPRSCNAL----LHRLSKVGRGDLSRKFFKDM-GAAGIKRSVFTYNIMI 63

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
               +  +++   +LF ++ E+   PDI TYN ++D +GK G++ E   +  +MK   C 
Sbjct: 64  DYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCD 123

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE---KPTLPTFNSMIINYGKARLQGKA 210
           PD+IT+N LI+ + K   F++M + F+ L   K    KP + T+++ I  + K  +  +A
Sbjct: 124 PDVITYNALINCFCK---FERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEA 180

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
              F  M  +  TP+  TY  +I       N++ A ++ +E+ + G  + V T  A+L+ 
Sbjct: 181 IKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDG 240

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            C  G   EA+ +F    N GV P+  TY  L   + KA   E  + +LK M++  I P+
Sbjct: 241 LCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPD 300



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 152/331 (45%), Gaps = 21/331 (6%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ LI   GK G     + +F +M+++ C PD   YNALI        K
Sbjct: 83  KEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFC----K 138

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            + + KA  +  +MK     KPN+VTY+  + A  +   + +    F ++    L P+ +
Sbjct: 139 FERMPKAFEFLHEMKA-NGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEF 197

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++DA  K G + E   ++  +     K +++T+  L+D   +     + E+VF+++
Sbjct: 198 TYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAM 257

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN- 241
           +++   P   T+ +++  + KA+    A+ + ++M      P  + Y  I  ++G C+  
Sbjct: 258 LNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTI--LWGLCNES 315

Query: 242 -VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            +  A+ +  E+ + G +        +++AY  +G  TEA  L E   +           
Sbjct: 316 RLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLD----------- 364

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
            L     K N  E+ +KL   M   G++P+K
Sbjct: 365 -LVDGLCKNNCFEVAKKLFDEMLDKGMMPDK 394



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/340 (21%), Positives = 135/340 (39%), Gaps = 32/340 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS  I    K+G  + A+  F +MR     P+   Y +LI A+     KA  LA+AL   
Sbjct: 164 YSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANC----KAGNLAEALKLV 219

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           +++   G+   K N+VTY  LL    +   + +   +F+ +  + +AP+  TY  ++  +
Sbjct: 220 EEILQAGI---KLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGF 276

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK----------------- 174
            K   ++  + +L  MK    KPD++ +  ++         ++                 
Sbjct: 277 IKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNA 336

Query: 175 ------MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
                 M+  FKS   ++    L     ++    K      A+ +F +M      P  I 
Sbjct: 337 VIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIA 396

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
           Y  +I       N+  A  + D + ++G ++ +    A++     +G   +A  L +   
Sbjct: 397 YTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMI 456

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             GV PD   Y  L K Y      +   +L   M + G++
Sbjct: 457 GKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMI 496



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 2/197 (1%)

Query: 136 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195
           M++E      +M+  +  P   + N L+    K    D   + FK +  +  K ++ T+N
Sbjct: 1   MLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYN 60

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
            MI    K      A  +F +M    +TP  +TY  +I  +G    +     IF+++   
Sbjct: 61  IMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDA 120

Query: 256 GKDMKVSTLNAMLEAYC-MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
             D  V T NA++  +C    +P   + L E   N G+ P+  TY     A+ K  M + 
Sbjct: 121 DCDPDVITYNALINCFCKFERMPKAFEFLHEMKAN-GLKPNVVTYSTFIDAFCKEGMLQE 179

Query: 315 VQKLLKRMEQNGIVPNK 331
             K    M +  + PN+
Sbjct: 180 AIKFFVDMRRVALTPNE 196


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 144/332 (43%), Gaps = 2/332 (0%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K  W + +  I   L  +   K        L   M   GC P+    N L+    + +  
Sbjct: 118 KTGWRVNEVVINQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRV 177

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +AL   L +     G   C PN+VTYN ++    +A+ VD+   + + + +  +  D+ 
Sbjct: 178 EEALE--LLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVV 235

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY+ ++D   K   +   E VL  M     KPD++T+N +ID   K QA D+ E V + +
Sbjct: 236 TYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHM 295

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           +    KP + T+N++I    KA+   +A+ V Q M      P   TY C+I  Y      
Sbjct: 296 IDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEW 355

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
                  +E+   G D  V T + +L+  C NG  TEA  +F      G+ P+ + Y +L
Sbjct: 356 KEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGIL 415

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
              Y        +  LL  M  NGI PN   F
Sbjct: 416 LHGYAARGAIADLTDLLDLMVANGISPNNYIF 447



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 146/327 (44%), Gaps = 9/327 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS +I  + K      A  +   M + G +PD   YN +I        KA+A+ +A
Sbjct: 233 DVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLC----KAQAVDRA 288

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            G  Q M  KG+   KP++VTYN ++    +A+ VD+ + + + + +  + PDI TYN +
Sbjct: 289 EGVLQHMIDKGV---KPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCL 345

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  Y   G  KE+   L  M +    PD++T++LL+D   K     +  ++F  ++    
Sbjct: 346 IHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGI 405

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           KP +  +  ++  Y           +   M A   +P+   +  ++  Y     +  A  
Sbjct: 406 KPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMH 465

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           IF  +S+ G    V T   +++A C  G   +A L F    N GVTP+S  +  L     
Sbjct: 466 IFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLC 525

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFF 334
             +  E  ++L   M   G+ PN  FF
Sbjct: 526 TVDRWEKAEELFFEMWDQGVRPNVVFF 552



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 142/322 (44%), Gaps = 9/322 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI      G+ +  +    EM   G  PD   Y +L+  +L    K    A+ 
Sbjct: 338 DIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTY-SLLLDYLCKNGKCTE-ARK 395

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           + Y    KG+   KPN+  Y ILL   A    +  +  L   +  + ++P+ Y +N V+ 
Sbjct: 396 IFYCMIRKGI---KPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLC 452

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           AY K  MI E   + SRM  +   PD++T+ +LID+  K    D     F  +++    P
Sbjct: 453 AYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTP 512

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRARE 247
               FNS++          KAE +F +M      P+ + +  I  M   C+   V  A+ 
Sbjct: 513 NSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTI--MCNLCNEGQVMVAQR 570

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + D + ++G    V + N ++  +C+ G   EA  L +   ++G+ PD  +Y  L + Y 
Sbjct: 571 LIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYC 630

Query: 308 KANMKELVQKLLKRMEQNGIVP 329
           K    +    L + M + G+ P
Sbjct: 631 KTGRIDNAYCLFREMLRKGVTP 652



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 145/347 (41%), Gaps = 13/347 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I  + K      A  +   M + G +PD   YN +I        KA+A+ +A
Sbjct: 268 DVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLC----KAQAVDRA 323

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            G  Q M   +  KP+I TYN L+          +V    +E++   L PD+ TY+ ++D
Sbjct: 324 DGVLQHMIDKD-VKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLD 382

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              KNG   E   +   M     KP++  + +L+  Y  R A   +  +   ++ +   P
Sbjct: 383 YLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISP 442

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               FN ++  Y K  +  +A ++F +M+    +P  +TY  +I        V  A   F
Sbjct: 443 NNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKF 502

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +++   G        N+++   C      +A+ LF    + GV P+   +  +       
Sbjct: 503 NQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNE 562

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTD 356
               + Q+L+  ME+ G+ PN   +        ++L G    + +TD
Sbjct: 563 GQVMVAQRLIDSMERVGVRPNVISY--------NTLIGGHCLAGRTD 601



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 140/318 (44%), Gaps = 5/318 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           I++ ++    KK     AM +FS M   G  PD   Y  LI A      K   +  A+  
Sbjct: 446 IFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALC----KLGRVDDAVLK 501

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F +M   +   PN V +N L+         ++   LF E+ +  + P++  +N +M    
Sbjct: 502 FNQMIN-DGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLC 560

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
             G +   + ++  M+    +P++I++N LI  +      D+  Q+   ++    KP L 
Sbjct: 561 NEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLI 620

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           ++++++  Y K      A  +F++M     TP  +TY  I+    +    S A+E++  +
Sbjct: 621 SYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNM 680

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            K G+   + T N +L   C      EA  +F++  +  + P+  T+ ++     K   K
Sbjct: 681 IKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRK 740

Query: 313 ELVQKLLKRMEQNGIVPN 330
           +    L   +  +G+VPN
Sbjct: 741 KDAMDLFASIPSHGLVPN 758



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 142/323 (43%), Gaps = 9/323 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  LI  + K G+   A+  F++M N G  P+  V+N+L+   L T D+ +   KA
Sbjct: 478 DVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYG-LCTVDRWE---KA 533

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F +M   +  +PN+V +N ++        V     L   +    + P++ +YN ++ 
Sbjct: 534 EELFFEMWD-QGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIG 592

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +   G   E   +L  M S   KPD+I+++ L+  Y K    D    +F+ ++     P
Sbjct: 593 GHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTP 652

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T+++++      R   +A+ ++  M          TY  I+      + V  A +IF
Sbjct: 653 GAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIF 712

Query: 250 DELSKLGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
             L    KD++  + T   M++     G   +A  LF +  + G+ P+  TY ++ K   
Sbjct: 713 QSLCS--KDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNII 770

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           +  + +    L   ME++G  P+
Sbjct: 771 QEGLLDEFDNLFLAMEKSGCTPD 793



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 121/297 (40%), Gaps = 48/297 (16%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKALAKALG 71
           ++ ++  +  +GQ  +A  L   M   G RP+   YN LI  H L  R D+A  L   + 
Sbjct: 552 FNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMV 611

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP------------ 119
                 G+   KP++++Y+ LLR   +   +D    LF+E+    + P            
Sbjct: 612 SV----GL---KPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGL 664

Query: 120 -----------------------DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
                                  DIYTYN +++   K   + E   +   + S   +P+I
Sbjct: 665 FHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNI 724

Query: 157 ITFNLLIDSY--GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           ITF ++ID    G R+  D M+ +F S+      P + T+  M+ N  +  L  + + +F
Sbjct: 725 ITFTIMIDVLFKGGRKK-DAMD-LFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLF 782

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
             M     TP  +    II        + RA     ++ ++   ++ ST + ++  +
Sbjct: 783 LAMEKSGCTPDSVMLNAIIRSLLGRGEIMRAGAYLSKIDEMNFSLEASTTSLLISLF 839



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/250 (19%), Positives = 101/250 (40%), Gaps = 16/250 (6%)

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME---SVLSRMK-- 148
           RA + +  +D    LF EL        +  +N +++   +       E   S+ +RM   
Sbjct: 22  RARSGSLGIDDALKLFDELLPHARPASVRAFNHLLNVVARARCSSTSELAVSLFNRMARA 81

Query: 149 -SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA-RL 206
            SN+ +PD+ T+++L   + +    +     F  ++ +  +      N ++     A R+
Sbjct: 82  CSNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRV 141

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM------K 260
               + + ++M      P+ ++  C   + G C N  R  E  + L  + +D        
Sbjct: 142 DEAMDILLRRMPEFGCMPNVVS--CNTLLKGLC-NEKRVEEALELLHTMAEDGGGNCTPN 198

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           V T N +++  C       A+ + ++  + GV  D  TY  +     KA   +  + +L+
Sbjct: 199 VVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQ 258

Query: 321 RMEQNGIVPN 330
            M   G+ P+
Sbjct: 259 HMIDKGVKPD 268


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 155/322 (48%), Gaps = 5/322 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           ++S LI    K+G+   AM +FS+MR  G  PD   Y  +I        K+  +  A+ Y
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILC----KSGRVEDAMRY 431

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F++M   ER  P  + YN L+ +       D+   L  E+ +  +  D   +N ++D++ 
Sbjct: 432 FEQMID-ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHC 490

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G + E E +   M     KPDIIT++ LID Y      D+  ++  S++    KP   
Sbjct: 491 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCV 550

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N++I  Y K      A  +F++M +   +P  ITY  I+         + A+E++  +
Sbjct: 551 TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           ++ G  +++ST N +L   C N L  EA  +F+N     +  ++ T+ ++  A  K    
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 670

Query: 313 ELVQKLLKRMEQNGIVPNKRFF 334
           +  + L   +  NG+VP+ R +
Sbjct: 671 DEAKDLFAALSANGLVPDVRTY 692



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 150/328 (45%), Gaps = 7/328 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R  + +   YS +IA + K      AM + + M  +G  P+   YN+++    H    +
Sbjct: 227 DRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV----HGYCSS 282

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
               +A+G+ +KM   +  +P++VTYN L+    +     +   +F  + +  L P+I T
Sbjct: 283 GQPKEAIGFLKKMHS-DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITT 341

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++  Y   G + EM  +L  M  N   P+   F++LI +Y K+   D+   VF  + 
Sbjct: 342 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMR 401

Query: 184 HSKEKPTLPTFNSMI-INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                P   T+ ++I I     R++    Y F++M   + +P  I Y  +I      D  
Sbjct: 402 QQGLNPDTVTYGTVIGILCKSGRVEDAMRY-FEQMIDERLSPGNIVYNSLIHSLCIFDKW 460

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A+E+  E+   G  +     N++++++C  G   E++ LF+    +GV PD  TY  L
Sbjct: 461 DKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTL 520

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
              Y  A   +   KLL  M   G+ P+
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPD 548



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 119/245 (48%), Gaps = 10/245 (4%)

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN--QCK 153
           CA  R  D ++ + + + +    P++++YN ++     +   +E   +L  M  +   C 
Sbjct: 137 CADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCP 196

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           PD++++  +I+ + K    DK    +  ++     P + T++S+I    KA+   KA  V
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEV 256

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL---GKDMKVSTLNAMLEA 270
              M      P+  TY  I+  +GYC +  + +E    L K+   G +  V T N++++ 
Sbjct: 257 LTSMVKNGVMPNCRTYNSIV--HGYCSS-GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDY 313

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKRMEQNGIVP 329
            C NG  TEA  +F++    G+ P+ +TY  L + Y TK  + E+   LL  M +NGI P
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEM-HGLLDLMVRNGIHP 372

Query: 330 NKRFF 334
           N   F
Sbjct: 373 NHYVF 377



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 114/251 (45%), Gaps = 2/251 (0%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHE--SILAPDIYTYNGVMDAYGKNGMIKE 139
           C PN+ +YNILL+         +   L + + +      PD+ +Y  V++ + K G + +
Sbjct: 158 CIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDK 217

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
                  M      P+++T++ +I +  K QA DK  +V  S++ +   P   T+NS++ 
Sbjct: 218 AYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVH 277

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
            Y  +    +A    +KM +    P  +TY  ++         + AR++FD ++K G   
Sbjct: 278 GYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKP 337

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
           +++T   +L+ Y   G   E   L +     G+ P+   + +L  AY K    +    + 
Sbjct: 338 EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVF 397

Query: 320 KRMEQNGIVPN 330
            +M Q G+ P+
Sbjct: 398 SKMRQQGLNPD 408



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 134/311 (43%), Gaps = 13/311 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+  + K G+   A  +F  M   G +P+ + Y  L+  +        AL + 
Sbjct: 303 DVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYA----TKGALVEM 358

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            G    M   G+    PN   ++IL+ A A+   VDQ   +F ++ +  L PD  TY  V
Sbjct: 359 HGLLDLMVRNGIH---PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV 415

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +    K+G +++      +M   +  P  I +N LI S      +DK +++   ++    
Sbjct: 416 IGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGI 475

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
                 FNS+I ++ K     ++E +F  M  +   P  ITY  +I  Y     +  A +
Sbjct: 476 CLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATK 535

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL----LY 303
           +   +  +G      T N ++  YC      +A +LF    + GV+PD  TY +    L+
Sbjct: 536 LLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLF 595

Query: 304 KAYTKANMKEL 314
           +    A  KEL
Sbjct: 596 QTRRTAAAKEL 606



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 13/195 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI      G+   A  L + M + G +PD   YN LI  +     K   +  A
Sbjct: 513 DIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYC----KISRMEDA 568

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  F++M+      P+I+TYNI+L+   Q R       L+  + ES    ++ TYN ++ 
Sbjct: 569 LVLFREMES-SGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILH 627

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDII----TFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
              KN +  E      RM  N C  D+     TFN++I +  K    D+ + +F +L  +
Sbjct: 628 GLCKNNLTDEA----LRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSAN 683

Query: 186 KEKPTLPTFNSMIIN 200
              P + T++ M  N
Sbjct: 684 GLVPDVRTYSLMAEN 698



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 90/210 (42%), Gaps = 15/210 (7%)

Query: 144 LSRMKSNQCKPDIITFNLLIDSY---GKRQ-AFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
           ++R  +++  P++ T+ +L+ S    G+    F  +  V K           P    +  
Sbjct: 79  MARAGADEVTPNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCA 138

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
           +    R     + V ++MT +   P+  +Y   I + G CD+ +R++E  + L  +  D 
Sbjct: 139 D---KRTSDAMDIVLRRMTQLGCIPNVFSYN--ILLKGLCDD-NRSQEALELLQMMPDDG 192

Query: 260 KVSTLNAMLEAYCMNGLPTEADL--LFENSHNM---GVTPDSSTYKLLYKAYTKANMKEL 314
                + +     +NG   E DL   +   H M   G+ P+  TY  +  A  KA   + 
Sbjct: 193 GDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDK 252

Query: 315 VQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             ++L  M +NG++PN R +   +  + SS
Sbjct: 253 AMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 155/342 (45%), Gaps = 11/342 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+     G+ R A+ +F +M   GC+P    YN ++              K 
Sbjct: 207 DVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVF---GKMGTPWNKI 263

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               +KMK  +   P+  TYN L+  C +     +   +F+E+  +  + D  TYN ++D
Sbjct: 264 TSLVEKMKS-DGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLD 322

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK+   KE   VL+ M  N   P I+T+N LI +Y +    D+  ++   +     KP
Sbjct: 323 VYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKP 382

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ +++  + +A     A  +F++M      P+  T+   I MYG     +   +IF
Sbjct: 383 DVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIF 442

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE++  G    + T N +L  +  NG+ +E   +F+     G  P+  T+  L  AY++ 
Sbjct: 443 DEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRC 502

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSG 351
              E    + +RM   G+ P+       L T+++ LA    G
Sbjct: 503 GSFEQAMTVYRRMLDAGVTPD-------LSTYNTVLAALARG 537



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 164/389 (42%), Gaps = 69/389 (17%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L++   + G+   AM +F EMRN+GC+P+   +NA I  +   R K   + K 
Sbjct: 383 DVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMY-GNRGKFTEMMKI 441

Query: 70  L--------------------------------GYFQKMKGMERCKPNIVTYNILLRACA 97
                                            G F++MK      P   T+N L+ A +
Sbjct: 442 FDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV-PERETFNTLISAYS 500

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           +  + +Q   +++ + ++ + PD+ TYN V+ A  + GM ++ E VL+ M+  +CKP+ +
Sbjct: 501 RCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNEL 560

Query: 158 TFNLLIDSYGKRQAFDKM-----------------------------------EQVFKSL 182
           T+  L+ +Y   +    M                                   E+ F  L
Sbjct: 561 TYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSEL 620

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 P + T NSM+  YG+ ++  KA  V   M    +TPS  TY  ++ M+    + 
Sbjct: 621 KERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADF 680

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            ++ EI  E+   G    + + N ++ AYC N    +A  +F    N G+ PD  TY   
Sbjct: 681 GKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTF 740

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             +Y   +M E    +++ M ++G  PN+
Sbjct: 741 IGSYAADSMFEEAIGVVRYMIKHGCRPNQ 769



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 154/329 (46%), Gaps = 6/329 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI    +    + A  +F EM+ +G   D   YNAL+  +     K+    +A
Sbjct: 278 DAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVY----GKSHRPKEA 333

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +    +M  +    P+IVTYN L+ A A+   +D+   L  ++ E    PD++TY  ++ 
Sbjct: 334 MKVLNEMV-LNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLS 392

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            + + G ++   S+   M++  CKP+I TFN  I  YG R  F +M ++F  +      P
Sbjct: 393 GFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSP 452

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+N+++  +G+  +  +   VF++M    + P   T+  +I+ Y  C +  +A  ++
Sbjct: 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVY 512

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             +   G    +ST N +L A    G+  +++ +     +    P+  TY  L  AY   
Sbjct: 513 RRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANG 572

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
               L+  L + +  +G++  +   L+ L
Sbjct: 573 KEIGLMHSLAEEV-YSGVIEPRAVLLKTL 600



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 146/318 (45%), Gaps = 19/318 (5%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  ++ +   ++ LI+   + G    AM ++  M ++G  PD S YN ++ A       
Sbjct: 481 KRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAA------- 533

Query: 63  AKALAKALGYFQKMKGME-----RCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
              LA+   + Q  K +      RCKPN +TY  LL A A  + +  +++L +E++  ++
Sbjct: 534 ---LARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVI 590

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
            P       ++    K  ++ E E   S +K     PDI T N ++  YG+RQ   K   
Sbjct: 591 EPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANG 650

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           V   +      P++ T+NS++  + ++   GK+E + +++ A    P  I+Y  +I  Y 
Sbjct: 651 VLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVI--YA 708

Query: 238 YCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           YC N  +  A  IF E+   G    V T N  + +Y  + +  EA  +       G  P+
Sbjct: 709 YCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPN 768

Query: 296 SSTYKLLYKAYTKANMKE 313
            +TY  +   Y K N K+
Sbjct: 769 QNTYNSIVDGYCKLNRKD 786



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 124/264 (46%), Gaps = 2/264 (0%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A  +F K K  +    N V   I++    +   V     +F  L E   + D+Y+Y  +
Sbjct: 156 RAFDWFMKQKDYQSMLDNSVV-AIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSL 214

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-QAFDKMEQVFKSLMHSK 186
           + A+  +G  +E  +V  +M+ + CKP +IT+N++++ +GK    ++K+  + + +    
Sbjct: 215 ISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDG 274

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P   T+N++I    +  L  +A  VF++M A  ++   +TY  ++ +YG       A 
Sbjct: 275 IAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAM 334

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           ++ +E+   G    + T N+++ AY  +G+  EA  L       G  PD  TY  L   +
Sbjct: 335 KVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGF 394

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            +A   E    + + M   G  PN
Sbjct: 395 ERAGKVESAMSIFEEMRNAGCKPN 418



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 154/377 (40%), Gaps = 76/377 (20%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           QK    + D  + + +I+++GK+G+   A  +F+ ++  G   D   Y +LI+A  ++  
Sbjct: 164 QKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANS-- 221

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
                                                 R  + VN +FK++ E    P +
Sbjct: 222 -------------------------------------GRYREAVN-VFKKMEEDGCKPTL 243

Query: 122 YTYNGVMDAYGKNGM-IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            TYN +++ +GK G    ++ S++ +MKS+   PD  T+N LI    +     +  QVF+
Sbjct: 244 ITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFE 303

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY---G 237
            +  +       T+N+++  YGK+    +A  V  +M    ++PS +TY  +I+ Y   G
Sbjct: 304 EMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDG 363

Query: 238 YCDN--------------------------------VSRAREIFDELSKLGKDMKVSTLN 265
             D                                 V  A  IF+E+   G    + T N
Sbjct: 364 MLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFN 423

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
           A ++ Y   G  TE   +F+  +  G++PD  T+  L   + +  M   V  + K M++ 
Sbjct: 424 AFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA 483

Query: 326 GIVPNKRFFLEALETFS 342
           G VP +  F   +  +S
Sbjct: 484 GFVPERETFNTLISAYS 500


>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1285

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 157/326 (48%), Gaps = 3/326 (0%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           A   +++ ++ V  + G+      L   MR     PD   +N LI A   +   A   A 
Sbjct: 61  ATVQVFNAMMGVYARSGRFDDVRQLLDAMRGQELEPDLVSFNTLINARAKSGCLAPGSAF 120

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
            L    +  G+   +P+++TYN L+ AC+Q  N+D   A+F+E+  S   PD++TYN ++
Sbjct: 121 DLLLEVRQVGL---RPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMV 177

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
             +G+ G  ++ E +   +     KPD +T+N L+ ++ K    D +E+V + L+ +  K
Sbjct: 178 SVHGRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFK 237

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
               T+N+MI  YGK      A  ++ +M A+  TP  +TY  +I   G  D +S A ++
Sbjct: 238 KDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKV 297

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            +E++  G    + T +A++ AY   G   EA   F +    GV PD   Y ++     +
Sbjct: 298 LEEMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIAR 357

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
           +     +  L + M  +G  P+   +
Sbjct: 358 SGDMRKLMALYQTMMNDGYRPDNALY 383



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 145/301 (48%), Gaps = 11/301 (3%)

Query: 48  VYNALITAHLHTR--DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQV 105
           V+NA++  +  +   D  + L  A      M+G E  +P++V++N L+ A A++  +   
Sbjct: 65  VFNAMMGVYARSGRFDDVRQLLDA------MRGQE-LEPDLVSFNTLINARAKSGCLAPG 117

Query: 106 NA--LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +A  L  E+ +  L PD+ TYN ++ A  +   + +  +V   M +++C+PD+ T+N ++
Sbjct: 118 SAFDLLLEVRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMV 177

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
             +G+       E++F+ L+    KP   T+NS++  + K       E V +++    + 
Sbjct: 178 SVHGRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFK 237

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
              ITY  +I MYG    +  A  ++DE+  LG      T   ++++       ++A  +
Sbjct: 238 KDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKV 297

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
            E   + G+ P   T+  L  AY K   +E   +    M  +G+ P++  +L  L+  + 
Sbjct: 298 LEEMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIAR 357

Query: 344 S 344
           S
Sbjct: 358 S 358



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 125/291 (42%), Gaps = 5/291 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           L  E+R  G RPD   YN LI+A      +   L  A+  F++M   E C+P++ TYN +
Sbjct: 122 LLLEVRQVGLRPDVITYNTLISAC----SQGSNLDDAVAVFEEMMASE-CRPDLWTYNAM 176

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +         +F+EL E    PD  TYN ++ A+ K G    +E V   +     
Sbjct: 177 VSVHGRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGF 236

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           K D IT+N +I  YGK    D    ++  +      P   T+  +I + GK      A  
Sbjct: 237 KKDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGK 296

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           V ++M      P+ +T+  +I  Y        A   F  +   G          ML+   
Sbjct: 297 VLEEMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIA 356

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            +G   +   L++   N G  PD++ Y+++  A  K N  + ++ +++ ME
Sbjct: 357 RSGDMRKLMALYQTMMNDGYRPDNALYQVMLAALAKGNEYDEIEAVVQDME 407



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 124/273 (45%), Gaps = 11/273 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++ +  D   Y+ L+    K+G       +  E+  +G + D   YN +I    H   K 
Sbjct: 198 EKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMI----HMYGKM 253

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L  ALG + +M+ +  C P+ VTY +L+ +  +   +     + +E+ ++ L P + T
Sbjct: 254 GRLDLALGLYDEMRAL-GCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVT 312

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           ++ ++ AY K G  +E     S M ++  KPD + + +++D   +     K+  +++++M
Sbjct: 313 FSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGDMRKLMALYQTMM 372

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM-KYTPSFITYECIITMYGYCDNV 242
           +   +P    +  M+    K     + E V Q M  + +  P  ++    I +   C  +
Sbjct: 373 NDGYRPDNALYQVMLAALAKGNEYDEIEAVVQDMEVVCQMNPQLVSS---ILIKAEC--I 427

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
           S+  ++  +    G +    +L ++L+AY   G
Sbjct: 428 SQGAKLLKKACLQGHEPDSKSLLSILDAYETTG 460



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/361 (20%), Positives = 160/361 (44%), Gaps = 42/361 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  I++ LI    + G    A  +F  M   G  P     N ++ A L    +   L   
Sbjct: 623 DRRIWNALIHAYAESGLYEHARAVFDIMIEKGPLPTIDSVNGMMRA-LIIDGRLDELYVI 681

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +   Q M G +  K  ++   ++L A  +A ++ +V  ++  + E+   P+++ Y  ++ 
Sbjct: 682 VQELQDM-GFKISKSTVI---LMLDAFTKAGDIFEVMKIYNGMKEAGYLPNMHIYRSMIS 737

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              +N   +++E ++  M+    +PD+   N L+  Y     FDK  +V+ S++ +  +P
Sbjct: 738 LLCRNKRYRDVELMVVEMERAGFEPDLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEP 797

Query: 190 TLPTFNSMIINY-----------------------------------GKARLQGKAEYVF 214
              T+N++I+ Y                                   GKA+L  +AE +F
Sbjct: 798 NEDTYNTLIVMYSRNLRPEEGFTLLNEMGKKGLTPKLESYKSLLAASGKAKLWEQAEQLF 857

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           +++ +  Y  +   Y  ++ +Y    N S+A ++   + + G +  ++T++ ++ +Y   
Sbjct: 858 EEIRSKGYRLNRSLYHMLMKIYRDACNHSKAEQLLASMKEDGIEPTIATMHILMTSYGTA 917

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL-VQKLLKRMEQNGIVPNKRF 333
           G P EA+ +  +  +  +   +  Y  ++ AY K     L + KLL+ M+ +G+ P+ + 
Sbjct: 918 GHPDEAEKVLNSLKSSSLEVSTLPYSTVFNAYLKNGDYNLGITKLLE-MKADGVKPDHQV 976

Query: 334 F 334
           +
Sbjct: 977 W 977



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 133/305 (43%), Gaps = 5/305 (1%)

Query: 28  RLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK-PNI 86
           ++ +W  +E    G + +PS+   +  A +H   ++     A   F  M  +E+   P I
Sbjct: 602 KIKLWQHAENFVKGLKQEPSIDRRIWNALIHAYAESGLYEHARAVFDIM--IEKGPLPTI 659

Query: 87  VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 146
            + N ++RA      +D++  + +EL +        T   ++DA+ K G I E+  + + 
Sbjct: 660 DSVNGMMRALIIDGRLDELYVIVQELQDMGFKISKSTVILMLDAFTKAGDIFEVMKIYNG 719

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY-GKAR 205
           MK     P++  +  +I    + + +  +E +   +  +  +P L   N++++ Y G   
Sbjct: 720 MKEAGYLPNMHIYRSMISLLCRNKRYRDVELMVVEMERAGFEPDLTILNTLLLMYTGNGN 779

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
                E V+  +      P+  TY  +I MY           + +E+ K G   K+ +  
Sbjct: 780 FDKTVE-VYHSILEAGLEPNEDTYNTLIVMYSRNLRPEEGFTLLNEMGKKGLTPKLESYK 838

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
           ++L A     L  +A+ LFE   + G   + S Y +L K Y  A      ++LL  M+++
Sbjct: 839 SLLAASGKAKLWEQAEQLFEEIRSKGYRLNRSLYHMLMKIYRDACNHSKAEQLLASMKED 898

Query: 326 GIVPN 330
           GI P 
Sbjct: 899 GIEPT 903



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/356 (20%), Positives = 146/356 (41%), Gaps = 32/356 (8%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH------------- 56
           D  +Y  LI  + +      A  +FS+M+  G  P   +Y ++I+A+             
Sbjct: 518 DCNLYEYLITCLEEAEFFPEASQVFSDMQFIGIEPSRKIYESMISAYCKLGFPETAHQLM 577

Query: 57  ---------LHTRDKAKALAKALGYFQK-------MKGMERCKPNI--VTYNILLRACAQ 98
                    L+       + +A G  +        +KG+++ +P+I    +N L+ A A+
Sbjct: 578 DEAVQSGISLNILSSRVTMIEAYGKIKLWQHAENFVKGLKQ-EPSIDRRIWNALIHAYAE 636

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
           +   +   A+F  + E    P I + NG+M A   +G + E+  ++  ++    K    T
Sbjct: 637 SGLYEHARAVFDIMIEKGPLPTIDSVNGMMRALIIDGRLDELYVIVQELQDMGFKISKST 696

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
             L++D++ K     ++ +++  +  +   P +  + SMI    + +     E +  +M 
Sbjct: 697 VILMLDAFTKAGDIFEVMKIYNGMKEAGYLPNMHIYRSMISLLCRNKRYRDVELMVVEME 756

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
              + P       ++ MY    N  +  E++  + + G +    T N ++  Y  N  P 
Sbjct: 757 RAGFEPDLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEPNEDTYNTLIVMYSRNLRPE 816

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           E   L       G+TP   +YK L  A  KA + E  ++L + +   G   N+  +
Sbjct: 817 EGFTLLNEMGKKGLTPKLESYKSLLAASGKAKLWEQAEQLFEEIRSKGYRLNRSLY 872



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/401 (20%), Positives = 148/401 (36%), Gaps = 88/401 (21%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  ++ ++ + G  R  M L+  M N G RPD ++Y  ++ A      K     + 
Sbjct: 344 DRLAYLVMLDIIARSGDMRKLMALYQTMMNDGYRPDNALYQVMLAA----LAKGNEYDEI 399

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               Q M+ + +  P +V+ +IL++A   ++    +     + HE    PD  +   ++D
Sbjct: 400 EAVVQDMEVVCQMNPQLVS-SILIKAECISQGAKLLKKACLQGHE----PDSKSLLSILD 454

Query: 130 AYGKNGMIKEMESVL-----------------------------------SRMKSNQCKP 154
           AY   G  +E  S+L                                   S M+  +C  
Sbjct: 455 AYETTGKHEEGLSLLQFIREHVPSSCNLISECSIMLLCKNQKIAAAMQEYSSMQMLKCGS 514

Query: 155 ---DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI------------- 198
              D   +  LI    + + F +  QVF  +     +P+   + SMI             
Sbjct: 515 FGQDCNLYEYLITCLEEAEFFPEASQVFSDMQFIGIEPSRKIYESMISAYCKLGFPETAH 574

Query: 199 ------------IN-----------YGKARLQGKAEYVFQKMTAMKYTPSFI--TYECII 233
                       +N           YGK +L   AE   +    +K  PS     +  +I
Sbjct: 575 QLMDEAVQSGISLNILSSRVTMIEAYGKIKLWQHAENFVK---GLKQEPSIDRRIWNALI 631

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
             Y        AR +FD + + G    + ++N M+ A  ++G   E  ++ +   +MG  
Sbjct: 632 HAYAESGLYEHARAVFDIMIEKGPLPTIDSVNGMMRALIIDGRLDELYVIVQELQDMGFK 691

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
              ST  L+  A+TKA     V K+   M++ G +PN   +
Sbjct: 692 ISKSTVILMLDAFTKAGDIFEVMKIYNGMKEAGYLPNMHIY 732



 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 68/338 (20%), Positives = 142/338 (42%), Gaps = 22/338 (6%)

Query: 18  IAVMGKKGQTRLAMWLFSEMRNSGCRP---DPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           I ++ K  +   AM  +S M+   C     D ++Y  LIT      ++A+   +A   F 
Sbjct: 488 IMLLCKNQKIAAAMQEYSSMQMLKCGSFGQDCNLYEYLITC----LEEAEFFPEASQVFS 543

Query: 75  KMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM-DAY 131
            M+  G+E   P+   Y  ++ A  +    +  + L  E  +S ++ +I +    M +AY
Sbjct: 544 DMQFIGIE---PSRKIYESMISAYCKLGFPETAHQLMDEAVQSGISLNILSSRVTMIEAY 600

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           GK  + +  E+ +  +K  +   D   +N LI +Y +   ++    VF  ++     PT+
Sbjct: 601 GKIKLWQHAENFVKGLK-QEPSIDRRIWNALIHAYAESGLYEHARAVFDIMIEKGPLPTI 659

Query: 192 PTFNSM----IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            + N M    II+    RL  +   + Q++  M +  S  T   ++  +    ++    +
Sbjct: 660 DSVNGMMRALIID---GRLD-ELYVIVQELQDMGFKISKSTVILMLDAFTKAGDIFEVMK 715

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           I++ + + G    +    +M+   C N    + +L+       G  PD +    L   YT
Sbjct: 716 IYNGMKEAGYLPNMHIYRSMISLLCRNKRYRDVELMVVEMERAGFEPDLTILNTLLLMYT 775

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 345
                +   ++   + + G+ PN+  +   +  +S +L
Sbjct: 776 GNGNFDKTVEVYHSILEAGLEPNEDTYNTLIVMYSRNL 813


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 155/322 (48%), Gaps = 5/322 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           ++S LI    K+G+   AM +FS+MR  G  PD   Y  +I        K+  +  A+ Y
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILC----KSGRVEDAMRY 431

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F++M   ER  P  + YN L+ +       D+   L  E+ +  +  D   +N ++D++ 
Sbjct: 432 FEQMID-ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHC 490

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G + E E +   M     KPDIIT++ LID Y      D+  ++  S++    KP   
Sbjct: 491 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCV 550

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N++I  Y K      A  +F++M +   +P  ITY  I+         + A+E++  +
Sbjct: 551 TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           ++ G  +++ST N +L   C N L  EA  +F+N     +  ++ T+ ++  A  K    
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 670

Query: 313 ELVQKLLKRMEQNGIVPNKRFF 334
           +  + L   +  NG+VP+ R +
Sbjct: 671 DEAKDLFAALSANGLVPDVRTY 692



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 150/328 (45%), Gaps = 7/328 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R  + +   YS +IA + K      AM + + M  +G  P+   YN+++    H    +
Sbjct: 227 DRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV----HGYCSS 282

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
               +A+G+ +KM   +  +P++VTYN L+    +     +   +F  + +  L P+I T
Sbjct: 283 GQPKEAIGFLKKMHS-DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITT 341

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++  Y   G + EM  +L  M  N   P+   F++LI +Y K+   D+   VF  + 
Sbjct: 342 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMR 401

Query: 184 HSKEKPTLPTFNSMI-INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                P   T+ ++I I     R++    Y F++M   + +P  I Y  +I      D  
Sbjct: 402 QQGLNPDTVTYGTVIGILCKSGRVEDAMRY-FEQMIDERLSPGNIVYNSLIHSLCIFDKW 460

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A+E+  E+   G  +     N++++++C  G   E++ LF+    +GV PD  TY  L
Sbjct: 461 DKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTL 520

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
              Y  A   +   KLL  M   G+ P+
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPD 548



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 134/319 (42%), Gaps = 6/319 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI      G+  L       +   G R D   +  L+      +  + A+   L   
Sbjct: 94  YGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRM 153

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE--SILAPDIYTYNGVMDAY 131
            ++     C PN+ +YNILL+         +   L + + +      PD+ +Y  V++ +
Sbjct: 154 TQLG----CIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G + +       M      P+++T++ +I +  K QA DK  +V  S++ +   P  
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+NS++  Y  +    +A    +KM +    P  +TY  ++         + AR++FD 
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           ++K G   +++T   +L+ Y   G   E   L +     G+ P+   + +L  AY K   
Sbjct: 330 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGK 389

Query: 312 KELVQKLLKRMEQNGIVPN 330
            +    +  +M Q G+ P+
Sbjct: 390 VDQAMLVFSKMRQQGLNPD 408



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 125/259 (48%), Gaps = 11/259 (4%)

Query: 83  KPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           + + + +  LL+  CA  R  D ++ + + + +    P++++YN ++         +E  
Sbjct: 123 RVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEAL 182

Query: 142 SVLSRMKSN--QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
            +L  M  +   C PD++++  +I+ + K    DK    +  ++     P + T++S+I 
Sbjct: 183 ELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIA 242

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL---G 256
              KA+   KA  V   M      P+  TY  I+  +GYC +  + +E    L K+   G
Sbjct: 243 ALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV--HGYCSS-GQPKEAIGFLKKMHSDG 299

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELV 315
            +  V T N++++  C NG  TEA  +F++    G+ P+ +TY  L + Y TK  + E+ 
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEM- 358

Query: 316 QKLLKRMEQNGIVPNKRFF 334
             LL  M +NGI PN   F
Sbjct: 359 HGLLDLMVRNGIHPNHYVF 377



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 134/311 (43%), Gaps = 13/311 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+  + K G+   A  +F  M   G +P+ + Y  L+  +        AL + 
Sbjct: 303 DVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYA----TKGALVEM 358

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            G    M   G+    PN   ++IL+ A A+   VDQ   +F ++ +  L PD  TY  V
Sbjct: 359 HGLLDLMVRNGIH---PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV 415

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +    K+G +++      +M   +  P  I +N LI S      +DK +++   ++    
Sbjct: 416 IGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGI 475

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
                 FNS+I ++ K     ++E +F  M  +   P  ITY  +I  Y     +  A +
Sbjct: 476 CLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATK 535

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL----LY 303
           +   +  +G      T N ++  YC      +A +LF    + GV+PD  TY +    L+
Sbjct: 536 LLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLF 595

Query: 304 KAYTKANMKEL 314
           +    A  KEL
Sbjct: 596 QTRRTAAAKEL 606



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 13/195 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI      G+   A  L + M + G +PD   YN LI  +     K   +  A
Sbjct: 513 DIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYC----KISRMEDA 568

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  F++M+      P+I+TYNI+L+   Q R       L+  + ES    ++ TYN ++ 
Sbjct: 569 LVLFREMES-SGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILH 627

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDII----TFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
              KN +  E      RM  N C  D+     TFN++I +  K    D+ + +F +L  +
Sbjct: 628 GLCKNNLTDEA----LRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSAN 683

Query: 186 KEKPTLPTFNSMIIN 200
              P + T++ M  N
Sbjct: 684 GLVPDVRTYSLMAEN 698



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 15/210 (7%)

Query: 144 LSRMKSNQCKPDIITFNLLIDSY---GKRQ-AFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
           ++R  +++  P++ T+ +LI S    G+    F  +  V K           P    +  
Sbjct: 79  MARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 138

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
           +    R     + V ++MT +   P+  +Y   I + G CD  +R++E  + L  +  D 
Sbjct: 139 D---KRTSDAMDIVLRRMTQLGCIPNVFSYN--ILLKGLCDE-NRSQEALELLQMMPDDG 192

Query: 260 KVSTLNAMLEAYCMNGLPTEADL--LFENSHNM---GVTPDSSTYKLLYKAYTKANMKEL 314
                + +     +NG   E DL   +   H M   G+ P+  TY  +  A  KA   + 
Sbjct: 193 GDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDK 252

Query: 315 VQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             ++L  M +NG++PN R +   +  + SS
Sbjct: 253 AMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282


>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Brachypodium distachyon]
          Length = 791

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 160/325 (49%), Gaps = 11/325 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+   ++   + A  +F EMR +G  PD    N+L+  +     KA+   +A
Sbjct: 246 DRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVY----GKARRYDEA 301

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +G  ++M+    C P++VTYN L+ +  +   +++   L +E+    + PD+ TY  ++ 
Sbjct: 302 IGVLKEME-QGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVS 360

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              + G I       + M  N CKP++ T+N LI  +G R  F +M  VF  +  +   P
Sbjct: 361 GLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGFVP 420

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+N+++  +G+  L  +   VF++M    Y P   TY  +I+ Y  C    +A EI+
Sbjct: 421 DVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIY 480

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             + + G    +ST NA+L A    G   +A+ LF    N+   PD  +Y  L  AY  A
Sbjct: 481 KRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANA 540

Query: 310 ----NMKELVQKL-LKRME-QNGIV 328
                MK L + +  +R+E  NG+V
Sbjct: 541 KKLDKMKSLSEDIYAERIESHNGLV 565



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 145/321 (45%), Gaps = 4/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+ + +  + R A+ +F  M  +G  P    YN ++  H++++  A    + 
Sbjct: 175 DASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVL--HVYSK-IAVPWKEV 231

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L     M+  +    +  TYN L+  C +     +   +F E+  +   PD  T N ++D
Sbjct: 232 LALVDSMR-KDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLD 290

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK     E   VL  M+   C P ++T+N LI SY K    ++  Q+ + +     +P
Sbjct: 291 VYGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEP 350

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ +++    +A     A   + +M      P+  TY  +I ++G          +F
Sbjct: 351 DVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVF 410

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE+   G    V T N +L  +  NGL TE   +F+     G  P+  TY  L  +Y++ 
Sbjct: 411 DEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRC 470

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
            + +   ++ KRM + GI P+
Sbjct: 471 GLFDQAMEIYKRMIEAGIHPD 491



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 160/404 (39%), Gaps = 75/404 (18%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L++ + + G+   A+  ++EM  +GC+P+   YNALI  H   R K     + 
Sbjct: 351 DVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLH-GVRGK---FPEM 406

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH---------------- 113
           +  F +++      P++VT+N LL    Q     +V+ +FKE+                 
Sbjct: 407 MIVFDEIRSAGFV-PDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLIS 465

Query: 114 -------------------ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
                              E+ + PDI TYN V+ A  + G  ++ E + + M++   +P
Sbjct: 466 SYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRP 525

Query: 155 DIITFNLLIDSYGKRQAFDKM-----------------------------------EQVF 179
           D ++++ L+ +Y   +  DKM                                   E+ F
Sbjct: 526 DELSYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSDTEKAF 585

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             L   +    +   N+MI  YGK  +  K E +   M       S  TY  ++ MY   
Sbjct: 586 LELRRRRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRL 645

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            +  +   I  E+          + N M+ AY   G   EA  LF      G+ PD  TY
Sbjct: 646 GDCEKCENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTY 705

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
            +  K+Y   +M E    L++ M  +G  PN+R +   L+ + S
Sbjct: 706 NIFVKSYVANSMFEEAIDLVRYMVTHGCKPNERTYNTILQEYCS 749



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 133/308 (43%), Gaps = 40/308 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  Y+ +   Y  LI+   + G    AM ++  M  +G  PD S YNA+++A      +
Sbjct: 449 KKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSA----LAR 504

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL-------------- 108
                +A   F +M+ ++  +P+ ++Y+ LL A A A+ +D++ +L              
Sbjct: 505 GGRWEQAEKLFAEMENLD-SRPDELSYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNG 563

Query: 109 ---------------------FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
                                F EL     + DI   N ++  YGKNGM+K++E +LS M
Sbjct: 564 LVKTLVLVNSKVNNLSDTEKAFLELRRRRCSLDINVLNAMISIYGKNGMVKKVEEILSLM 623

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           K +       T+N L+  Y +    +K E +   +  S+ +P   ++N+MI  YG+    
Sbjct: 624 KESSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSRARPDRYSYNTMIYAYGRKGQM 683

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            +A  +F +M      P  +TY   +  Y        A ++   +   G      T N +
Sbjct: 684 KEASRLFSEMKCSGLVPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTHGCKPNERTYNTI 743

Query: 268 LEAYCMNG 275
           L+ YC +G
Sbjct: 744 LQEYCSHG 751



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 127/295 (43%), Gaps = 36/295 (12%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK---------- 133
           P+   Y  L+ A ++A       A+F+ +  + + P + TYN V+  Y K          
Sbjct: 174 PDASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLA 233

Query: 134 --------------------------NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
                                       + KE   V   M++   +PD +T N L+D YG
Sbjct: 234 LVDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYG 293

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
           K + +D+   V K +      P++ T+NS+I +Y K  L  +A  + ++M      P  I
Sbjct: 294 KARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVI 353

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           TY  +++       +  A   ++E+ + G    + T NA+++ + + G   E  ++F+  
Sbjct: 354 TYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEI 413

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            + G  PD  T+  L   + +  +   V  + K M+++G VP +  ++  + ++S
Sbjct: 414 RSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYS 468



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 124/277 (44%), Gaps = 32/277 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALA 67
           D   Y+ +++ + + G+   A  LF+EM N   RPD   Y++L+ A+ + +  DK K+L+
Sbjct: 491 DISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANAKKLDKMKSLS 550

Query: 68  KALGYFQKMKGM-----------------------------ERCKPNIVTYNILLRACAQ 98
           + + Y ++++                                RC  +I   N ++    +
Sbjct: 551 EDI-YAERIESHNGLVKTLVLVNSKVNNLSDTEKAFLELRRRRCSLDINVLNAMISIYGK 609

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
              V +V  +   + ES +     TYN +M  Y + G  ++ E++L+ +KS++ +PD  +
Sbjct: 610 NGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSRARPDRYS 669

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +N +I +YG++    +  ++F  +  S   P + T+N  + +Y    +  +A  + + M 
Sbjct: 670 YNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVANSMFEEAIDLVRYMV 729

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
                P+  TY  I+  Y     ++  +     L +L
Sbjct: 730 THGCKPNERTYNTILQEYCSHGRIADGKSFISNLPEL 766


>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
 gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
          Length = 1480

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 160/332 (48%), Gaps = 9/332 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ ++ V  ++G+      L   MR  GC+PD   +N LI A L        LA  L  
Sbjct: 256 VYNAMMGVYARRGRFNKVQELLDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIELLN 315

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +  G+   +P+ +TYN L+ AC++A N+++   +F ++      PD++TYN ++  YG
Sbjct: 316 EVRRSGL---RPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYG 372

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + G+  + E + + ++S    PD +++N L+ ++ +    +K++++++ ++         
Sbjct: 373 RCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEM 432

Query: 193 TFNSMIINYGKARLQGKAEYVFQ---KMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           T+N+MI  YGK   QG+ E   Q    M +    P  +TY  +I   G  + ++ A  + 
Sbjct: 433 TYNTMIHMYGK---QGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVM 489

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+   G    + T +A++  Y   G P EA+  F+     G+ PD   Y ++   + + 
Sbjct: 490 SEMLNTGVKPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDIHLRF 549

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           N  +    L K M  +GI  +   +   L T 
Sbjct: 550 NEPKRAMTLYKEMLHDGITLDHSLYELMLRTL 581



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 149/326 (45%), Gaps = 7/326 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKG--QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH 58
           + ++R    D   ++ LI    K G     LA+ L +E+R SG RPD   YN LI+A   
Sbjct: 279 LMRERGCKPDLVSFNTLINARLKAGAMMPNLAIELLNEVRRSGLRPDTITYNTLISAC-- 336

Query: 59  TRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
              +A  L +A   F  M+    C+P++ TYN ++    +     +   LF +L      
Sbjct: 337 --SRASNLEEAAKVFDDMEA-HHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFF 393

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD  +YN ++ A+ + G +++++ +   M       D +T+N +I  YGK+   +   Q+
Sbjct: 394 PDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQNELALQL 453

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           ++ +  S   P   T+  +I + GK     +A  V  +M      P+  TY  +I  Y  
Sbjct: 454 YRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPTLKTYSALICGYAK 513

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
                 A E FD + + G        + ML+ +     P  A  L++   + G+T D S 
Sbjct: 514 AGKPVEAEETFDCMLRSGIRPDHLAYSVMLDIHLRFNEPKRAMTLYKEMLHDGITLDHSL 573

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQ 324
           Y+L+ +   K N  E + ++++ ME+
Sbjct: 574 YELMLRTLRKVNKVEDIGRVIRDMEE 599



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 156/341 (45%), Gaps = 32/341 (9%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPS------VYNALITAHL 57
           + WY  +  + S +++V+GK  Q  LA+ +F        R +PS      VYNA++  + 
Sbjct: 213 RHWYSPNARMLSTILSVLGKANQEALAVEVF-------MRAEPSAGNTVQVYNAMMGVYA 265

Query: 58  HTRDKAKALAKALGYFQKMKGM-----ER-CKPNIVTYNILL--RACAQARNVDQVNALF 109
                        G F K++ +     ER CKP++V++N L+  R  A A   +    L 
Sbjct: 266 RR-----------GRFNKVQELLDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIELL 314

Query: 110 KELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR 169
            E+  S L PD  TYN ++ A  +   ++E   V   M+++ C+PD+ T+N +I  YG+ 
Sbjct: 315 NEVRRSGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRC 374

Query: 170 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
               K EQ+F  L      P   ++NS++  + +     K + ++++M  + +    +TY
Sbjct: 375 GLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTY 434

Query: 230 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289
             +I MYG       A +++ ++   G++    T   ++++        EA  +     N
Sbjct: 435 NTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLN 494

Query: 290 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            GV P   TY  L   Y KA      ++    M ++GI P+
Sbjct: 495 TGVKPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPD 535



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 150/324 (46%), Gaps = 5/324 (1%)

Query: 3    KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
            +QR    D  +++ LI      G    A  +F+ M   G  P     N L+ A L    +
Sbjct: 805  RQRCITVDRKVWNALIEAYAASGCYERARAIFNTMMRDGPSPTVDTINGLLQA-LIVDGR 863

Query: 63   AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
               L   +   Q M G +  K +I+   ++L A A+A N+ +V  ++  +  +   P ++
Sbjct: 864  LDELYVVVQELQDM-GFKISKSSIL---LMLDAFARAGNIFEVKKIYHGMKAAGYFPTMH 919

Query: 123  TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
             Y  +     +   ++++E++LS M+    KPD+  +N ++  Y   + F K  QV++ +
Sbjct: 920  LYRVMARLLSRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRI 979

Query: 183  MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 +P   T+N++I+ Y +     +   +  +M      P   TY+ ++  +G    V
Sbjct: 980  KEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLV 1039

Query: 243  SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             +A E+F+EL   G  +  S  + M++ Y  +G  ++A+ LF    + GV P  +T  LL
Sbjct: 1040 EQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTIATMHLL 1099

Query: 303  YKAYTKANMKELVQKLLKRMEQNG 326
              +Y  +   +  +K+L  +++ G
Sbjct: 1100 MVSYGSSGQPQEAEKVLSNLKETG 1123



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 134/313 (42%), Gaps = 5/313 (1%)

Query: 33   LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
            ++  M+ +G  P   +Y   + A L +R K     +A+    +  G    KP++  +N +
Sbjct: 905  IYHGMKAAGYFPTMHLYR--VMARLLSRGKQVRDVEAMLSEMEEAGF---KPDLSIWNSV 959

Query: 93   LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
            L+      +  +   +++ + E  L PD  TYN ++  Y ++   +E  S++  M+    
Sbjct: 960  LKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGL 1019

Query: 153  KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            +P + T+  L+ S+GK+Q  ++ E++F+ L     K     +++M+  Y  +    KAE 
Sbjct: 1020 EPKLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAER 1079

Query: 213  VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
            +F  M      P+  T   ++  YG       A ++   L + G ++     +++++AY 
Sbjct: 1080 LFSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETGSNLSTLPYSSVIDAYL 1139

Query: 273  MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             NG               G+ PD   +    +A + +        LL  ++  G     R
Sbjct: 1140 RNGDYNIGIQKLIQMKKEGLEPDHRIWTCFIRAASLSRRTSEAIVLLNALQDAGFDLPIR 1199

Query: 333  FFLEALETFSSSL 345
               E  E+  S+L
Sbjct: 1200 LLTEKPESLVSAL 1212



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/354 (18%), Positives = 150/354 (42%), Gaps = 35/354 (9%)

Query: 33   LFSEMRNSGCRPDPSVYNALI----------TAHLHTRDKAKA-------------LAKA 69
            +FS+MR  G +   S+Y +++          TAH H  D A++             + +A
Sbjct: 729  VFSDMRFCGIKASESLYESMVLLYCKMGFPETAH-HLIDFAESDGILLNNISLYVNVIEA 787

Query: 70   LGYFQKMKGMERCKPNIV---------TYNILLRACAQARNVDQVNALFKELHESILAPD 120
             G  +  +  E    N+           +N L+ A A +   ++  A+F  +     +P 
Sbjct: 788  YGRLKLWQKAESVAGNLRQRCITVDRKVWNALIEAYAASGCYERARAIFNTMMRDGPSPT 847

Query: 121  IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            + T NG++ A   +G + E+  V+  ++    K    +  L++D++ +     ++++++ 
Sbjct: 848  VDTINGLLQALIVDGRLDELYVVVQELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYH 907

Query: 181  SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
             +  +   PT+  +  M     + +     E +  +M    + P    +  ++ MY   +
Sbjct: 908  GMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIE 967

Query: 241  NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            +  +  +++  + + G +    T N ++  YC +  P E   L       G+ P   TYK
Sbjct: 968  DFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYK 1027

Query: 301  LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAK 354
             L  ++ K  + E  ++L + ++  G   ++ F+   ++ + +S  GS S + +
Sbjct: 1028 SLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNS--GSHSKAER 1079



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 133/325 (40%), Gaps = 15/325 (4%)

Query: 10   DTGIYSKLIAVMGKKGQTRLAMWLFSE-----MRNSGCRPDPSVYNALITAHLHTRDKAK 64
            +  +Y  +I   G     RL +W  +E     +R      D  V+NALI A+      + 
Sbjct: 777  NISLYVNVIEAYG-----RLKLWQKAESVAGNLRQRCITVDRKVWNALIEAYA----ASG 827

Query: 65   ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
               +A   F  M   +   P + T N LL+A      +D++  + +EL +        + 
Sbjct: 828  CYERARAIFNTMM-RDGPSPTVDTINGLLQALIVDGRLDELYVVVQELQDMGFKISKSSI 886

Query: 125  NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
              ++DA+ + G I E++ +   MK+    P +  + ++     + +    +E +   +  
Sbjct: 887  LLMLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEE 946

Query: 185  SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
            +  KP L  +NS++  Y       K   V+Q++      P   TY  +I MY        
Sbjct: 947  AGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEE 1006

Query: 245  AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
               +  E+   G + K+ T  +++ ++    L  +A+ LFE   + G   D S Y  + K
Sbjct: 1007 GFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMK 1066

Query: 305  AYTKANMKELVQKLLKRMEQNGIVP 329
             Y  +      ++L   M+  G+ P
Sbjct: 1067 IYRNSGSHSKAERLFSMMKDAGVEP 1091



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 73/353 (20%), Positives = 140/353 (39%), Gaps = 38/353 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I + GK+GQ  LA+ L+ +M++SG  PD   Y  LI     +  K   +A+A
Sbjct: 430 DEMTYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLI----DSLGKTNKIAEA 485

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            G   +M      KP + TY+ L+   A+A    +    F  +  S + PD   Y+ ++D
Sbjct: 486 AGVMSEMLNTG-VKPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLD 544

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            + +    K   ++   M  +    D   + L++ +  K    + + +V + +       
Sbjct: 545 IHLRFNEPKRAMTLYKEMLHDGITLDHSLYELMLRTLRKVNKVEDIGRVIRDMEEICGMN 604

Query: 190 TLPTFNSMIIN---YGKA--------------------------RLQGKAEYVFQKMTAM 220
           T  T +S+++    Y +A                             G+       +  +
Sbjct: 605 T-QTISSILVKGECYDEAAKMLRRAISDHFEIDRENLLSILSSYSSSGRHAEALDLLEFL 663

Query: 221 K-YTP--SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
           K ++P  S +  E ++ M      +  A + +    +LG     +   ++++    N L 
Sbjct: 664 KEHSPRSSQMITEALVVMLCKAQQLDAALKEYSNNRELGFTGSFTMFESLIQCCLENELI 723

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           TEA  +F +    G+    S Y+ +   Y K    E    L+   E +GI+ N
Sbjct: 724 TEASQVFSDMRFCGIKASESLYESMVLLYCKMGFPETAHHLIDFAESDGILLN 776


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 155/342 (45%), Gaps = 11/342 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+     G+ R A+ +F +M   GC+P    YN ++              K 
Sbjct: 207 DVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVF---GKMGTPWNKI 263

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               +KMK  +   P+  TYN L+  C +     +   +F+E+  +  + D  TYN ++D
Sbjct: 264 TSLVEKMKS-DGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLD 322

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK+   KE   VL+ M+ N   P I+T+N LI +Y +    D+  ++   +     KP
Sbjct: 323 VYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKP 382

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ +++  + +A     A  +F++M      P+  T+   I MYG         +IF
Sbjct: 383 DVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIF 442

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE++  G    + T N +L  +  NG+ +E   +F+     G  P+  T+  L  AY++ 
Sbjct: 443 DEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRC 502

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSG 351
              E    + +RM   G+ P+       L T+++ LA    G
Sbjct: 503 GSFEQAMTVYRRMLDAGVTPD-------LSTYNTVLAALARG 537



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 165/389 (42%), Gaps = 69/389 (17%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L++   + G+   AM +F EMRN+GC+P+   +NA I  +   R K   + K 
Sbjct: 383 DVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMY-GNRGKFVDMMKI 441

Query: 70  L--------------------------------GYFQKMKGMERCKPNIVTYNILLRACA 97
                                            G F++MK      P   T+N L+ A +
Sbjct: 442 FDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV-PERETFNTLISAYS 500

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           +  + +Q   +++ + ++ + PD+ TYN V+ A  + GM ++ E VL+ M+  +CKP+ +
Sbjct: 501 RCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNEL 560

Query: 158 TFNLLIDSYGKRQAFDKM-----------------------------------EQVFKSL 182
           T+  L+ +Y   +    M                                   E+ F  L
Sbjct: 561 TYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSEL 620

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 P + T NSM+  YG+ ++ GKA  V   M    +TPS  TY  ++ M+    + 
Sbjct: 621 KERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSADF 680

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            ++ EI  E+   G    + + N ++ AYC N    +A  +F    + G+ PD  TY   
Sbjct: 681 GKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTF 740

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             +Y   +M E    +++ M ++G  PN+
Sbjct: 741 IGSYAADSMFEEAIGVVRYMIKHGCRPNQ 769



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 154/329 (46%), Gaps = 6/329 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI    +    + A  +F EM+ +G   D   YNAL+  +     K+    +A
Sbjct: 278 DAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVY----GKSHRPKEA 333

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +    +M+ +    P+IVTYN L+ A A+   +D+   L  ++ E    PD++TY  ++ 
Sbjct: 334 MKVLNEME-LNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLS 392

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            + + G ++   ++   M++  CKP+I TFN  I  YG R  F  M ++F  +      P
Sbjct: 393 GFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSP 452

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+N+++  +G+  +  +   VF++M    + P   T+  +I+ Y  C +  +A  ++
Sbjct: 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVY 512

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             +   G    +ST N +L A    G+  +++ +     +    P+  TY  L  AY   
Sbjct: 513 RRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANG 572

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
               L+  L + +  +G++  +   L+ L
Sbjct: 573 KEIGLMHSLAEEV-YSGVIEPRAVLLKTL 600



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 147/318 (46%), Gaps = 19/318 (5%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  ++ +   ++ LI+   + G    AM ++  M ++G  PD S YN ++ A       
Sbjct: 481 KRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAA------- 533

Query: 63  AKALAKALGYFQKMKGME-----RCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
              LA+   + Q  K +      RCKPN +TY  LL A A  + +  +++L +E++  ++
Sbjct: 534 ---LARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVI 590

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
            P       ++    K  ++ E E   S +K     PDI T N ++  YG+RQ   K  +
Sbjct: 591 EPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANE 650

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           V   +      P++ T+NS++  + ++   GK+E + +++ A    P  I+Y  +I  Y 
Sbjct: 651 VLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVI--YA 708

Query: 238 YCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           YC N  +  A  IF E+   G    V T N  + +Y  + +  EA  +       G  P+
Sbjct: 709 YCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPN 768

Query: 296 SSTYKLLYKAYTKANMKE 313
            +TY  +   Y K N K+
Sbjct: 769 QNTYNSIVDGYCKLNRKD 786



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 122/263 (46%), Gaps = 2/263 (0%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A  +F K K  +    N V   I++    +   V     LF  L E   + D+Y+Y  ++
Sbjct: 157 AFDWFMKQKDYQSMLDNSVI-AIVISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLI 215

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-QAFDKMEQVFKSLMHSKE 187
            A+  +G  +E  +V  +M+   CKP +IT+N++++ +GK    ++K+  + + +     
Sbjct: 216 SAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGI 275

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P   T+N++I    +  L  +A  VF++M A  ++   +TY  ++ +YG       A +
Sbjct: 276 APDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMK 335

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + +E+   G    + T N+++ AY  +G+  EA  L       G  PD  TY  L   + 
Sbjct: 336 VLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFE 395

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           +A   E    + + M   G  PN
Sbjct: 396 RAGKVESAMNIFEEMRNAGCKPN 418



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 153/377 (40%), Gaps = 76/377 (20%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           QK    + D  + + +I+++GK+G+   A  LF+ ++  G   D   Y +LI+A  ++  
Sbjct: 164 QKDYQSMLDNSVIAIVISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANS-- 221

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
                                                 R  + VN +FK++ E    P +
Sbjct: 222 -------------------------------------GRYREAVN-VFKKMEEEGCKPTL 243

Query: 122 YTYNGVMDAYGKNGM-IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            TYN +++ +GK G    ++ S++ +MKS+   PD  T+N LI    +     +  QVF+
Sbjct: 244 ITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFE 303

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY---G 237
            +  +       T+N+++  YGK+    +A  V  +M    ++PS +TY  +I+ Y   G
Sbjct: 304 EMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDG 363

Query: 238 YCDN--------------------------------VSRAREIFDELSKLGKDMKVSTLN 265
             D                                 V  A  IF+E+   G    + T N
Sbjct: 364 MLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFN 423

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
           A ++ Y   G   +   +F+  +  G++PD  T+  L   + +  M   V  + K M++ 
Sbjct: 424 AFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA 483

Query: 326 GIVPNKRFFLEALETFS 342
           G VP +  F   +  +S
Sbjct: 484 GFVPERETFNTLISAYS 500


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 163/339 (48%), Gaps = 15/339 (4%)

Query: 12  GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           G++  L +V+ ++     A+  FS+M+     P     N L    LH   K   L K  G
Sbjct: 64  GVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGL----LH---KFARLGKTDG 116

Query: 72  ---YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
              +F+ M G    KP + TYNI++    +  +++  + LF+E+    L PD  TYN ++
Sbjct: 117 MKRFFKDMIGAGS-KPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMI 175

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YGK G + +       MKS  C+PD+IT+N LI+ + K     K  + F+ +  S  K
Sbjct: 176 DGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLK 235

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P + ++++++  + K  +  +A   +  M  +   P+  TY  ++  Y    N+S A  +
Sbjct: 236 PNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRL 295

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            DE+S++G +  V T  A+++  C      EA+ LF      GV P+ ++Y  L   + K
Sbjct: 296 ADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVK 355

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
           A   +   +LL  M+  GI P+    L    TF  SL G
Sbjct: 356 AKNMDRALELLDEMKGRGIKPD----LLLYGTFIWSLCG 390



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 155/365 (42%), Gaps = 41/365 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K R  I DT  Y+ +I   GK G+    ++ F EM++  C PD   YN LI        K
Sbjct: 160 KFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFC----K 215

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L K L +F++MK     KPN+V+Y+ L+ A  +   + Q    + ++    L P+ +
Sbjct: 216 FGKLPKGLEFFREMK-QSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEH 274

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++DAY K G + +   +   M     + +++T+  LID     +   + E++F  +
Sbjct: 275 TYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKM 334

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           + +   P L ++ ++I  + KA+   +A  +  +M      P  + Y   I      + +
Sbjct: 335 VTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKI 394

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAY------------------------------- 271
             A+ + +E+ + G          +++AY                               
Sbjct: 395 EAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVL 454

Query: 272 ----CMNGLPTEA-DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
               C N L ++A D     S++ G+  +++ Y  +     K +  E    L ++M Q G
Sbjct: 455 IDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKG 514

Query: 327 IVPNK 331
           +VP++
Sbjct: 515 LVPDR 519



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 103/246 (41%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C P    ++ L     +    ++    F ++    + P   + NG++  + + G    M+
Sbjct: 59  CVPGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMK 118

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
                M     KP + T+N++ID   K    +    +F+ +      P   T+NSMI  Y
Sbjct: 119 RFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGY 178

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
           GK        Y F++M +M   P  ITY  +I  +     + +  E F E+ + G    V
Sbjct: 179 GKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNV 238

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            + + +++A+C   +  +A   + +   +G+ P+  TY  L  AY K        +L   
Sbjct: 239 VSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADE 298

Query: 322 MEQNGI 327
           M Q G+
Sbjct: 299 MSQVGV 304



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 106/245 (43%), Gaps = 2/245 (0%)

Query: 97  AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
           A+ ++ D  + L+     ++  P    ++ +     +  M +E     S+MK  +  P  
Sbjct: 41  AELKDCDVFDVLWST--RNVCVPGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKT 98

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
            + N L+  + +    D M++ FK ++ +  KPT+ T+N MI    K      A  +F++
Sbjct: 99  RSCNGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEE 158

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M      P  +TY  +I  YG    +      F+E+  +  +  V T N ++  +C  G 
Sbjct: 159 MKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGK 218

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
             +    F      G+ P+  +Y  L  A+ K +M +   K    M + G+VPN+  +  
Sbjct: 219 LPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTS 278

Query: 337 ALETF 341
            ++ +
Sbjct: 279 LVDAY 283



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 104/244 (42%), Gaps = 6/244 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  +    + + A  LF +M  +G  P+ + Y ALI    H   KAK + +AL   
Sbjct: 311 YTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALI----HGFVKAKNMDRALELL 366

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +MKG    KP+++ Y   + +      ++    +  E+ E  +  + + Y  +MDAY K
Sbjct: 367 DEMKG-RGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFK 425

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS-KEKPTLP 192
           +    E   +L  M     +   +TF +LID   K +   K    F  + +    +    
Sbjct: 426 SENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAA 485

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            + +MI    K      A  +F++M      P    Y  +I       NV +A  + D++
Sbjct: 486 IYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLIDGKLKQGNVVQALALRDKM 545

Query: 253 SKLG 256
           +++G
Sbjct: 546 AEIG 549


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 158/333 (47%), Gaps = 15/333 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R   AD   YS +I  + + G    A+ LF EM   G +     YN+L+        K
Sbjct: 210 EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC----K 265

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A          + M   E   PN++T+N+LL    +   + + N L+KE+    ++P+I 
Sbjct: 266 AGKWNDGALLLKDMVSRE-IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNII 324

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN +MD Y     + E  ++L  M  N+C PDI+TF  LI  Y   +  D   +VF+++
Sbjct: 325 TYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNI 384

Query: 183 MHSKEKPTLPTFNSMIINY---GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
                     T++ ++  +   GK +L   AE +FQ+M +    P  +TY   I + G C
Sbjct: 385 SKRGLVANAVTYSILVQGFCQSGKIKL---AEELFQEMVSHGVLPDVMTYG--ILLDGLC 439

Query: 240 DN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
           DN  + +A EIF++L K   D+ +     ++E  C  G   +A  LF +    GV P+  
Sbjct: 440 DNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVM 499

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           TY ++     K         LL++ME++G  PN
Sbjct: 500 TYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 532



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 143/297 (48%), Gaps = 7/297 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  DT  ++ LI  +  +G+   A+ L   M  +GC+PD   YN+++     + D + AL
Sbjct: 144 YEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLAL 203

Query: 67  AKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
                  +KM+  ER  K ++ TY+ ++ +  +   +D   +LFKE+    +   + TYN
Sbjct: 204 ----DLLRKME--ERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYN 257

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++    K G   +   +L  M S +  P++ITFN+L+D + K     +  +++K ++  
Sbjct: 258 SLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 317

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P + T+N+++  Y       +A  +   M   K +P  +T+  +I  Y     V   
Sbjct: 318 GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDG 377

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            ++F  +SK G      T + +++ +C +G    A+ LF+   + GV PD  TY +L
Sbjct: 378 MKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGIL 434



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 151/307 (49%), Gaps = 9/307 (2%)

Query: 26  QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85
           +T  A  +  ++   G  PD + +N LI   L    K   +++A+    +M     C+P+
Sbjct: 128 KTCFAYSVLGKVMKLGYEPDTTTFNTLIKG-LFLEGK---VSEAVVLVDRMVE-NGCQPD 182

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           +VTYN ++    ++ +      L +++ E  +  D++TY+ ++D+  ++G I    S+  
Sbjct: 183 VVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFK 242

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
            M++   K  ++T+N L+    K   ++    + K ++  +  P + TFN ++  + K  
Sbjct: 243 EMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEG 302

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVST 263
              +A  ++++M     +P+ ITY  +  M GYC  + +S A  + D + +      + T
Sbjct: 303 KLQEANELYKEMITRGISPNIITYNTL--MDGYCMQNRLSEANNMLDLMVRNKCSPDIVT 360

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
             ++++ YCM     +   +F N    G+  ++ TY +L + + ++   +L ++L + M 
Sbjct: 361 FTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMV 420

Query: 324 QNGIVPN 330
            +G++P+
Sbjct: 421 SHGVLPD 427



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 119/262 (45%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P+  T+N L++       V +   L   + E+   PD+ TYN +++   ++G       
Sbjct: 145 EPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALD 204

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +L +M+    K D+ T++ +IDS  +    D    +FK +     K ++ T+NS++    
Sbjct: 205 LLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC 264

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           KA        + + M + +  P+ IT+  ++ ++     +  A E++ E+   G    + 
Sbjct: 265 KAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNII 324

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T N +++ YCM    +EA+ + +       +PD  T+  L K Y      +   K+ + +
Sbjct: 325 TYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNI 384

Query: 323 EQNGIVPNKRFFLEALETFSSS 344
            + G+V N   +   ++ F  S
Sbjct: 385 SKRGLVANAVTYSILVQGFCQS 406



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 144/313 (46%), Gaps = 12/313 (3%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTRDKA 63
           R  + +   ++ L+ V  K+G+ + A  L+ EM   G  P+   YN L+  + +  R   
Sbjct: 282 REIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNR--- 338

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L++A      M    +C P+IVT+  L++     + VD    +F+ + +  L  +  T
Sbjct: 339 --LSEANNMLDLMV-RNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVT 395

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ ++  + ++G IK  E +   M S+   PD++T+ +L+D        +K  ++F+ L 
Sbjct: 396 YSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQ 455

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DN 241
            SK    +  + ++I    K      A  +F  +      P+ +TY  +I+  G C   +
Sbjct: 456 KSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS--GLCKKGS 513

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +S A  +  ++ + G      T N ++ A+  +G  T +  L E   + G + D+S+ K+
Sbjct: 514 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKM 573

Query: 302 LYKAYTKANMKEL 314
           +      A MK L
Sbjct: 574 VIDMLLSA-MKRL 585



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 8/200 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R  +A+   YS L+    + G+ +LA  LF EM + G  PD   Y  L+       D  
Sbjct: 386 KRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLC---DNG 442

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           K L KAL  F+ ++   +    IV Y  ++    +   V+    LF  L    + P++ T
Sbjct: 443 K-LEKALEIFEDLQ-KSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMT 500

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY---GKRQAFDKMEQVFK 180
           Y  ++    K G + E   +L +M+ +   P+  T+N LI ++   G   A  K+ +  K
Sbjct: 501 YTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMK 560

Query: 181 SLMHSKEKPTLPTFNSMIIN 200
           S   S +  ++     M+++
Sbjct: 561 SCGFSADASSIKMVIDMLLS 580


>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 513

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 125/259 (48%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           KP++  +N+L+ A  + +   +    F  + +    P   ++N +M AY + G ++  E 
Sbjct: 98  KPDVGCFNMLMDAYGRTKQWTEAENTFHLMKKFQCLPTETSFNVLMAAYSRGGQLERAER 157

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           VL  MK + C P ++T+N  ++   K  ++   E VF+ + +    P + TF  MI  YG
Sbjct: 158 VLHEMKESNCSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMINIYG 217

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           KA    KAE++FQ M      PS  TY  +I  +    N  RA EIF EL  +G    + 
Sbjct: 218 KAHHSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGFVPDIY 277

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T NA+LEAY   G P  A  +FE     GV  D  +Y +L  A+ +A +    Q +   M
Sbjct: 278 TYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDSM 337

Query: 323 EQNGIVPNKRFFLEALETF 341
           ++ G  P  +  +  L  F
Sbjct: 338 KKVGFKPTMKSHILLLSAF 356



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 149/318 (46%), Gaps = 5/318 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+  + V+ K G  +LA  +F EM+N G  P  + +  +I  +     KA   AKA   F
Sbjct: 174 YNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMINIY----GKAHHSAKAEHLF 229

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           Q M+    C P++ TY  L+ A A+  N  +   +F EL      PDIYTYN +++AY +
Sbjct: 230 QSMR-KALCPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYSR 288

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G     + V   M     K D +++N+LID++G+       + ++ S+     KPT+ +
Sbjct: 289 GGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDSMKKVGFKPTMKS 348

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
              ++  + KA     AE   +++ +M   P    +  ++  YG    + +   +++ + 
Sbjct: 349 HILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKMESLYESMQ 408

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
                  + TLN ++  Y   G    A+ +F +  + G TPD  ++  L  AY+K  +  
Sbjct: 409 GSVCKPDIITLNTLINVYAQGGYIERAEEIFNSLESKGFTPDVMSWTSLMGAYSKRKLYR 468

Query: 314 LVQKLLKRMEQNGIVPNK 331
               + ++M   G +P++
Sbjct: 469 KCVSVYQKMLIAGCIPDR 486



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 160/325 (49%), Gaps = 13/325 (4%)

Query: 37  MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 96
           ++ S  +PD   +N L+ A+  T    K   +A   F  MK  + C P   ++N+L+ A 
Sbjct: 92  LQGSMFKPDVGCFNMLMDAYGRT----KQWTEAENTFHLMKKFQ-CLPTETSFNVLMAAY 146

Query: 97  AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
           ++   +++   +  E+ ES  +P + TYN  ++   K+G  +  E V   M++    P +
Sbjct: 147 SRGGQLERAERVLHEMKESNCSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAV 206

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
            TF L+I+ YGK     K E +F+S+  +   P+L T+ ++I  + +     +AE +F +
Sbjct: 207 NTFTLMINIYGKAHHSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAE 266

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           + ++ + P   TY  ++  Y    + + A+E+F+ + + G      + N +++A+   GL
Sbjct: 267 LQSVGFVPDIYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGL 326

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
            ++A  ++++   +G  P   ++ LL  A+ KA      +  ++R+E  G+ P+   F  
Sbjct: 327 ISDAQAIYDSMKKVGFKPTMKSHILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMF-- 384

Query: 337 ALETFSSSLAGSQSGSAKTDLTRSL 361
                 +SL G+   S + D   SL
Sbjct: 385 ------NSLLGAYGNSGRMDKMESL 403



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 145/321 (45%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D G ++ L+   G+  Q   A   F  M+   C P  + +N L+ A+     +   L +A
Sbjct: 100 DVGCFNMLMDAYGRTKQWTEAENTFHLMKKFQCLPTETSFNVLMAAY----SRGGQLERA 155

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                +MK    C P +VTYN  L    ++ +      +F+E+    + P + T+  +++
Sbjct: 156 ERVLHEMK-ESNCSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMIN 214

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK     + E +   M+   C P + T+  LI+++ +     + E++F  L      P
Sbjct: 215 IYGKAHHSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGFVP 274

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+N+++  Y +      A+ VF+ M         ++Y  +I  +G    +S A+ I+
Sbjct: 275 DIYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIY 334

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D + K+G    + +   +L A+   G  T+A+       +MGV PD+  +  L  AY  +
Sbjct: 335 DSMKKVGFKPTMKSHILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNS 394

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              + ++ L + M+ +   P+
Sbjct: 395 GRMDKMESLYESMQGSVCKPD 415


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 158/333 (47%), Gaps = 15/333 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R   AD   YS +I  + + G    A+ LF EM   G +     YN+L+        K
Sbjct: 220 EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC----K 275

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A          + M   E   PN++T+N+LL    +   + + N L+KE+    ++P+I 
Sbjct: 276 AGKWNDGALLLKDMVSRE-IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNII 334

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN +MD Y     + E  ++L  M  N+C PDI+TF  LI  Y   +  D   +VF+++
Sbjct: 335 TYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNI 394

Query: 183 MHSKEKPTLPTFNSMIINY---GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
                     T++ ++  +   GK +L   AE +FQ+M +    P  +TY   I + G C
Sbjct: 395 SKRGLVANAVTYSILVQGFCQSGKIKL---AEELFQEMVSHGVLPDVMTYG--ILLDGLC 449

Query: 240 DN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
           DN  + +A EIF++L K   D+ +     ++E  C  G   +A  LF +    GV P+  
Sbjct: 450 DNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVM 509

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           TY ++     K         LL++ME++G  PN
Sbjct: 510 TYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 542



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 143/297 (48%), Gaps = 7/297 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  DT  ++ LI  +  +G+   A+ L   M  +GC+PD   YN+++     + D + AL
Sbjct: 154 YEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLAL 213

Query: 67  AKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
                  +KM+  ER  K ++ TY+ ++ +  +   +D   +LFKE+    +   + TYN
Sbjct: 214 ----DLLRKME--ERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYN 267

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++    K G   +   +L  M S +  P++ITFN+L+D + K     +  +++K ++  
Sbjct: 268 SLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 327

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P + T+N+++  Y       +A  +   M   K +P  +T+  +I  Y     V   
Sbjct: 328 GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDG 387

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            ++F  +SK G      T + +++ +C +G    A+ LF+   + GV PD  TY +L
Sbjct: 388 MKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGIL 444



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 151/307 (49%), Gaps = 9/307 (2%)

Query: 26  QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85
           +T  A  +  ++   G  PD + +N LI   L    K   +++A+    +M     C+P+
Sbjct: 138 KTCFAYSVLGKVMKLGYEPDTTTFNTLIKG-LFLEGK---VSEAVVLVDRMVE-NGCQPD 192

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           +VTYN ++    ++ +      L +++ E  +  D++TY+ ++D+  ++G I    S+  
Sbjct: 193 VVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFK 252

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
            M++   K  ++T+N L+    K   ++    + K ++  +  P + TFN ++  + K  
Sbjct: 253 EMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEG 312

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVST 263
              +A  ++++M     +P+ ITY  +  M GYC  + +S A  + D + +      + T
Sbjct: 313 KLQEANELYKEMITRGISPNIITYNTL--MDGYCMQNRLSEANNMLDLMVRNKCSPDIVT 370

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
             ++++ YCM     +   +F N    G+  ++ TY +L + + ++   +L ++L + M 
Sbjct: 371 FTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMV 430

Query: 324 QNGIVPN 330
            +G++P+
Sbjct: 431 SHGVLPD 437



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/331 (20%), Positives = 143/331 (43%), Gaps = 5/331 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +S+  + + +  Q  L +    ++  +G   +    N +I           A +  LG  
Sbjct: 91  FSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYS-VLGKV 149

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+ G E   P+  T+N L++       V +   L   + E+   PD+ TYN +++   +
Sbjct: 150 MKL-GYE---PDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICR 205

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G       +L +M+    K D+ T++ +IDS  +    D    +FK +     K ++ T
Sbjct: 206 SGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVT 265

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS++    KA        + + M + +  P+ IT+  ++ ++     +  A E++ E+ 
Sbjct: 266 YNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMI 325

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    + T N +++ YCM    +EA+ + +       +PD  T+  L K Y      +
Sbjct: 326 TRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVD 385

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
              K+ + + + G+V N   +   ++ F  S
Sbjct: 386 DGMKVFRNISKRGLVANAVTYSILVQGFCQS 416



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 144/313 (46%), Gaps = 12/313 (3%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTRDKA 63
           R  + +   ++ L+ V  K+G+ + A  L+ EM   G  P+   YN L+  + +  R   
Sbjct: 292 REIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNR--- 348

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L++A      M    +C P+IVT+  L++     + VD    +F+ + +  L  +  T
Sbjct: 349 --LSEANNMLDLMV-RNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVT 405

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ ++  + ++G IK  E +   M S+   PD++T+ +L+D        +K  ++F+ L 
Sbjct: 406 YSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQ 465

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DN 241
            SK    +  + ++I    K      A  +F  +      P+ +TY  +I+  G C   +
Sbjct: 466 KSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS--GLCKKGS 523

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +S A  +  ++ + G      T N ++ A+  +G  T +  L E   + G + D+S+ K+
Sbjct: 524 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKM 583

Query: 302 LYKAYTKANMKEL 314
           +      A MK L
Sbjct: 584 VIDMLLSA-MKRL 595



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 8/200 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R  +A+   YS L+    + G+ +LA  LF EM + G  PD   Y  L+       D  
Sbjct: 396 KRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLC---DNG 452

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           K L KAL  F+ ++   +    IV Y  ++    +   V+    LF  L    + P++ T
Sbjct: 453 K-LEKALEIFEDLQK-SKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMT 510

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY---GKRQAFDKMEQVFK 180
           Y  ++    K G + E   +L +M+ +   P+  T+N LI ++   G   A  K+ +  K
Sbjct: 511 YTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMK 570

Query: 181 SLMHSKEKPTLPTFNSMIIN 200
           S   S +  ++     M+++
Sbjct: 571 SCGFSADASSIKMVIDMLLS 590


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 158/333 (47%), Gaps = 15/333 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R   AD   YS +I  + + G    A+ LF EM   G +     YN+L+        K
Sbjct: 220 EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC----K 275

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A          + M   E   PN++T+N+LL    +   + + N L+KE+    ++P+I 
Sbjct: 276 AGKWNDGALLLKDMVSRE-IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNII 334

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN +MD Y     + E  ++L  M  N+C PDI+TF  LI  Y   +  D   +VF+++
Sbjct: 335 TYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNI 394

Query: 183 MHSKEKPTLPTFNSMIINY---GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
                     T++ ++  +   GK +L   AE +FQ+M +    P  +TY   I + G C
Sbjct: 395 SKRGLVANAVTYSILVQGFCQSGKIKL---AEELFQEMVSHGVLPDVMTYG--ILLDGLC 449

Query: 240 DN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
           DN  + +A EIF++L K   D+ +     ++E  C  G   +A  LF +    GV P+  
Sbjct: 450 DNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVM 509

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           TY ++     K         LL++ME++G  PN
Sbjct: 510 TYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 542



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 143/297 (48%), Gaps = 7/297 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  DT  ++ LI  +  +G+   A+ L   M  +GC+PD   YN+++     + D + AL
Sbjct: 154 YEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLAL 213

Query: 67  AKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
                  +KM+  ER  K ++ TY+ ++ +  +   +D   +LFKE+    +   + TYN
Sbjct: 214 ----DLLRKME--ERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYN 267

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++    K G   +   +L  M S +  P++ITFN+L+D + K     +  +++K ++  
Sbjct: 268 SLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 327

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P + T+N+++  Y       +A  +   M   K +P  +T+  +I  Y     V   
Sbjct: 328 GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDG 387

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            ++F  +SK G      T + +++ +C +G    A+ LF+   + GV PD  TY +L
Sbjct: 388 MKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGIL 444



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 151/307 (49%), Gaps = 9/307 (2%)

Query: 26  QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85
           +T  A  +  ++   G  PD + +N LI   L    K   +++A+    +M     C+P+
Sbjct: 138 KTCFAYSVLGKVMKLGYEPDTTTFNTLIKG-LFLEGK---VSEAVVLVDRMVE-NGCQPD 192

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           +VTYN ++    ++ +      L +++ E  +  D++TY+ ++D+  ++G I    S+  
Sbjct: 193 VVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFK 252

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
            M++   K  ++T+N L+    K   ++    + K ++  +  P + TFN ++  + K  
Sbjct: 253 EMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEG 312

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVST 263
              +A  ++++M     +P+ ITY  +  M GYC  + +S A  + D + +      + T
Sbjct: 313 KLQEANELYKEMITRGISPNIITYNTL--MDGYCMQNRLSEANNMLDLMVRNKCSPDIVT 370

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
             ++++ YCM     +   +F N    G+  ++ TY +L + + ++   +L ++L + M 
Sbjct: 371 FTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMV 430

Query: 324 QNGIVPN 330
            +G++P+
Sbjct: 431 SHGVLPD 437



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/331 (20%), Positives = 143/331 (43%), Gaps = 5/331 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +S+  + + +  Q  L +    ++  +G   +    N +I           A +  LG  
Sbjct: 91  FSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYS-VLGKV 149

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+ G E   P+  T+N L++       V +   L   + E+   PD+ TYN +++   +
Sbjct: 150 MKL-GYE---PDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICR 205

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G       +L +M+    K D+ T++ +IDS  +    D    +FK +     K ++ T
Sbjct: 206 SGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVT 265

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS++    KA        + + M + +  P+ IT+  ++ ++     +  A E++ E+ 
Sbjct: 266 YNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMI 325

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    + T N +++ YCM    +EA+ + +       +PD  T+  L K Y      +
Sbjct: 326 TRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVD 385

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
              K+ + + + G+V N   +   ++ F  S
Sbjct: 386 DGMKVFRNISKRGLVANAVTYSILVQGFCQS 416



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 140/301 (46%), Gaps = 11/301 (3%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTRDKA 63
           R  + +   ++ L+ V  K+G+ + A  L+ EM   G  P+   YN L+  + +  R   
Sbjct: 292 REIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNR--- 348

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L++A      M    +C P+IVT+  L++     + VD    +F+ + +  L  +  T
Sbjct: 349 --LSEANNMLDLMV-RNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVT 405

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ ++  + ++G IK  E +   M S+   PD++T+ +L+D        +K  ++F+ L 
Sbjct: 406 YSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQ 465

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DN 241
            SK    +  + ++I    K      A  +F  +      P+ +TY  +I+  G C   +
Sbjct: 466 KSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS--GLCKKGS 523

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +S A  +  ++ + G      T N ++ A+  +G  T +  L E   + G + D+S+ K+
Sbjct: 524 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKM 583

Query: 302 L 302
           +
Sbjct: 584 V 584



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 8/200 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R  +A+   YS L+    + G+ +LA  LF EM + G  PD   Y  L+       D  
Sbjct: 396 KRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLC---DNG 452

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           K L KAL  F+ ++   +    IV Y  ++    +   V+    LF  L    + P++ T
Sbjct: 453 K-LEKALEIFEDLQK-SKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMT 510

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY---GKRQAFDKMEQVFK 180
           Y  ++    K G + E   +L +M+ +   P+  T+N LI ++   G   A  K+ +  K
Sbjct: 511 YTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMK 570

Query: 181 SLMHSKEKPTLPTFNSMIIN 200
           S   S +  ++     M+++
Sbjct: 571 SCGFSADASSIKMVIDMLLS 590


>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
          Length = 1438

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 161/326 (49%), Gaps = 3/326 (0%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           A   +++ ++ V  + G+   A  L   M + G  PD   +N LI A   +   A  +A 
Sbjct: 219 ATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVAL 278

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
            L +  +  G+   +P+++TYN L+ AC+Q+ N++    +F+++  S   PD++TYN ++
Sbjct: 279 DLLFEVRQSGL---RPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMV 335

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
             +G+ G  +E E +   +      PD IT+N L+ ++ K    DK+E   + L+ +  K
Sbjct: 336 SVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFK 395

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
               T+N+MI  YGK      A  ++ +M AM  TP  +TY  +I   G  + ++ A ++
Sbjct: 396 KNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKV 455

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            ++++  G    +   +A++ AY   G   +A+  F+     GV PD   Y ++   + +
Sbjct: 456 LEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFAR 515

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
           +   E +  L ++M  +   P+   +
Sbjct: 516 SGDTEKMLCLYRKMMNDNYRPDDDMY 541



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 164/332 (49%), Gaps = 13/332 (3%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALGYFQ 74
           ++ V+G+  Q  +A  +F  +R +G      V+NA++  +  +   D A+ L   +    
Sbjct: 194 VLGVLGRARQDSIAEEVF--LRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTM---- 247

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNAL--FKELHESILAPDIYTYNGVMDAYG 132
             +G++   P++V++N L+ A +++  +    AL    E+ +S L PD+ TYN ++ A  
Sbjct: 248 HDRGID---PDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACS 304

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           ++  +++  +V   M +++C+PD+ T+N ++  +G+    ++ E++F+ L+     P   
Sbjct: 305 QSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAI 364

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+NS++  + K     K E+  +++    +  + ITY  +I MYG    +  A  ++DE+
Sbjct: 365 TYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEM 424

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
             +G      T   M+++        EA  + E+  + G+ P    +  L  AY K   +
Sbjct: 425 RAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRR 484

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
              +     M  +G+ P++  +L  L+ F+ S
Sbjct: 485 ADAENTFDCMIASGVKPDRLAYLVMLDVFARS 516



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/361 (20%), Positives = 159/361 (44%), Gaps = 42/361 (11%)

Query: 10   DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
            D  I++ LI    + G    A  +F  M  +G  P     N ++ A L    +   L   
Sbjct: 779  DRRIWNALIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRA-LIVDGRLDELYVV 837

Query: 70   LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            +   Q M      K +  T  +LL A A+A +V +V  ++  +  +   P+++ Y  ++ 
Sbjct: 838  VEELQDMN----FKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMIS 893

Query: 130  AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
                +   +++E +++ M+    KPD+   N L++ Y     FD+  QV++S++ +  +P
Sbjct: 894  LLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEP 953

Query: 190  TLPTFNSMIINY-----------------------------------GKARLQGKAEYVF 214
               T+N++I+ Y                                    KA L+ +A+ +F
Sbjct: 954  DEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIF 1013

Query: 215  QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
            ++M +  Y  +   Y  ++ +Y    N S+A  +   + + G +  ++T++ ++ +Y   
Sbjct: 1014 EEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTA 1073

Query: 275  GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKLLKRMEQNGIVPNKRF 333
            G P EA+ +  N  +  +   +  Y  ++ AY K  +      KLL+ M+++G+ P+ + 
Sbjct: 1074 GQPREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLE-MKRDGVEPDHQV 1132

Query: 334  F 334
            +
Sbjct: 1133 W 1133



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 132/317 (41%), Gaps = 21/317 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH--TRDKAKALA 67
           D   Y+ +++V G+ G+   A  LF E+   G  PD   YN+L+ A       DK +   
Sbjct: 327 DLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTC 386

Query: 68  KAL---GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           + L   G+          K N +TYN ++    +   +D    L+ E+      PD  TY
Sbjct: 387 EQLVKAGF----------KKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTY 436

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
             ++D+ GK   I E   VL  M     KP +I F+ LI +Y K       E  F  ++ 
Sbjct: 437 TVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIA 496

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
           S  KP    +  M+  + ++    K   +++KM    Y P    Y+ ++      D    
Sbjct: 497 SGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCEE 556

Query: 245 AREIFDELSKLGKDMKVSTLNAML-EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
             E+  ++  L + M +  ++ ML +A C+    ++   L + +   G  PD  + + + 
Sbjct: 557 IEEVIQDMELLCR-MNLGIISTMLIKARCV----SQGAKLLKKACLQGYKPDIKSLRSIM 611

Query: 304 KAYTKANMKELVQKLLK 320
            AY      E    LL+
Sbjct: 612 NAYVMTEKHEEGLSLLE 628



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 129/316 (40%), Gaps = 22/316 (6%)

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA-RNVDQVNALFKELHESILAP 119
           D A+A    + +  +  G    +  +  +  L R+ A A R V  V  +     +  +A 
Sbjct: 149 DGARASPDEVAFVVRAVGESSWRRALDAFEWLARSSAPASRAVAVVLGVLGRARQDSIAE 208

Query: 120 DIY-----------TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
           +++            +N +M  Y ++G   +   +L  M      PD+++FN LI++  K
Sbjct: 209 EVFLRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSK 268

Query: 169 RQ------AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
                   A D + +V +S +    +P + T+N++I    ++     A  VF+ M A + 
Sbjct: 269 SGCLAAGVALDLLFEVRQSGL----RPDVITYNTLISACSQSSNLEDAVTVFEDMIASEC 324

Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
            P   TY  +++++G C     A  +F EL + G      T N++L A+   G   + + 
Sbjct: 325 RPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEH 384

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
             E     G   +  TY  +   Y K    +L   L   M   G  P+   +   +++  
Sbjct: 385 TCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLG 444

Query: 343 SSLAGSQSGSAKTDLT 358
                +++G    D+T
Sbjct: 445 KMNRIAEAGKVLEDMT 460



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 70/352 (19%), Positives = 151/352 (42%), Gaps = 23/352 (6%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++ ++ D   Y+ L+    K+G          ++  +G + +   YN +I    H   K 
Sbjct: 356 EKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMI----HMYGKM 411

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L  A+G + +M+ M  C P+ VTY +++ +  +   + +   + +++ ++ L P +  
Sbjct: 412 GRLDLAVGLYDEMRAMG-CTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIA 470

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           ++ ++ AY K G   + E+    M ++  KPD + + +++D + +    +KM  +++ +M
Sbjct: 471 FSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMM 530

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
           +   +P    +  +++   K     + E V Q M  +      +    I TM      VS
Sbjct: 531 NDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQDMELL----CRMNLGIISTMLIKARCVS 586

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN-----SHNMGVTPDSST 298
           +  ++  +    G    + +L +++ AY M     E   L E      S +  +  + S 
Sbjct: 587 QGAKLLKKACLQGYKPDIKSLRSIMNAYVMTEKHEEGLSLLECICEHVSFSQDLISECSI 646

Query: 299 YKLLYKAYTKANMKELVQKL-LKRMEQN--------GIVPNKRFFLEALETF 341
             L  K  + +  ++  Q+L LK  +QN          +    FF EA + F
Sbjct: 647 MLLCRKQTSISAYEQYSQRLMLKYPDQNCNLYEYLITCLIEAEFFSEACQVF 698



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 137/335 (40%), Gaps = 15/335 (4%)

Query: 17   LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT---RDKAKALAKALGYF 73
            L+    K G     M +++ M+ +G  P+  +Y ++I+   H    RD    +A+  G  
Sbjct: 856  LLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEG-- 913

Query: 74   QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
                G    KP++   N LL     A N D+   +++ + E+ L PD  TYN ++  Y +
Sbjct: 914  ---AGF---KPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCR 967

Query: 134  NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            +   +E  ++L+ M      P + ++  L+ +  K +  ++ +Q+F+ +     +     
Sbjct: 968  SFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSI 1027

Query: 194  FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            ++ M+  Y  A    KAE +   M      P+  T   ++T YG       A  + + L 
Sbjct: 1028 YHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLK 1087

Query: 254  KLGKDMKVSTL--NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
                 ++VSTL  + + +AY  NG               GV PD   +    +A +    
Sbjct: 1088 S--SSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVEPDHQVWTCFIRAASLCEQ 1145

Query: 312  KELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLA 346
                  LLK ++  G     R   E   +  S +A
Sbjct: 1146 TADAILLLKSLQDCGFDLPIRLLTERTPSLLSEIA 1180



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 166/400 (41%), Gaps = 76/400 (19%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA-------- 65
           Y+ +I + GK G+  LA+ L+ EMR  GC PD   Y  +I +       A+A        
Sbjct: 401 YNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMT 460

Query: 66  ---LAKALGYFQKM-----KGMERC--------------KPNIVTYNILLRACAQARNVD 103
              L   L  F  +     KG  R               KP+ + Y ++L   A++ + +
Sbjct: 461 DAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTE 520

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI-ITFNLL 162
           ++  L++++      PD   Y  ++ A  K    +E+E V+  M+   C+ ++ I   +L
Sbjct: 521 KMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQDMEL-LCRMNLGIISTML 579

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY--------GKARLQGKAEYV- 213
           I    K +   +  ++ K       KP + +  S++  Y        G + L+   E+V 
Sbjct: 580 I----KARCVSQGAKLLKKACLQGYKPDIKSLRSIMNAYVMTEKHEEGLSLLECICEHVS 635

Query: 214 --------------FQKMTAM----KYTPSFIT---------YECIITMYGYCDNVSRAR 246
                          +K T++    +Y+   +          YE +IT     +  S A 
Sbjct: 636 FSQDLISECSIMLLCRKQTSISAYEQYSQRLMLKYPDQNCNLYEYLITCLIEAEFFSEAC 695

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS-STYKLLYKA 305
           ++F ++  +G +   S   +++  YC  G P  A  L +++   G+  +  S   ++ +A
Sbjct: 696 QVFCDMQFIGIEASKSIYESIISTYCKLGFPETAHRLMDDALQSGIPLNILSCRVIIIEA 755

Query: 306 YTKANMKELVQKLLKRMEQ-NGIVPNKRFFLEALETFSSS 344
           Y K  + +  + L+K + Q +GI  ++R +   +  ++ S
Sbjct: 756 YGKIKLWQQAEILVKGLRQASGI--DRRIWNALIHAYAES 793



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 106/258 (41%), Gaps = 8/258 (3%)

Query: 91   ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
            I++ A  + +   Q   L K L ++    D   +N ++ AY ++G+ ++  +V   M   
Sbjct: 751  IIIEAYGKIKLWQQAEILVKGLRQAS-GIDRRIWNALIHAYAESGLYEKARAVFDNMIKT 809

Query: 151  QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
               P + + N ++ +       D++  V + L     K +  T   ++  + KA    + 
Sbjct: 810  GPLPTVDSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEV 869

Query: 211  EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
              ++  M A  Y P+   Y  +I++  + +       +  E+   G    ++ LNA+L  
Sbjct: 870  MKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNM 929

Query: 271  YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            Y   G       ++ +    G+ PD  TY  L   Y ++   E    LL  M + G+ P 
Sbjct: 930  YTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPK 989

Query: 331  KRFFLEALETFSSSLAGS 348
                   L+++ S LA S
Sbjct: 990  -------LQSYKSLLAAS 1000


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 158/333 (47%), Gaps = 15/333 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R   AD   YS +I  + + G    A+ LF EM   G +     YN+L+        K
Sbjct: 220 EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC----K 275

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A          + M   E   PN++T+N+LL    +   + + N L+KE+    ++P+I 
Sbjct: 276 AGKWNDGALLLKDMVSRE-IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNII 334

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN +MD Y     + E  ++L  M  N+C PDI+TF  LI  Y   +  D   +VF+++
Sbjct: 335 TYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNI 394

Query: 183 MHSKEKPTLPTFNSMIINY---GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
                     T++ ++  +   GK +L   AE +FQ+M +    P  +TY   I + G C
Sbjct: 395 SKRGLVANAVTYSILVQGFCQSGKIKL---AEELFQEMVSHGVLPDVMTYG--ILLDGLC 449

Query: 240 DN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
           DN  + +A EIF++L K   D+ +     ++E  C  G   +A  LF +    GV P+  
Sbjct: 450 DNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVM 509

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           TY ++     K         LL++ME++G  PN
Sbjct: 510 TYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 542



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 141/298 (47%), Gaps = 9/298 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  DT  ++ LI  +  +G+   A+ L   M  +GC+PD   YN+++     + D + A 
Sbjct: 154 YEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLA- 212

Query: 67  AKALGYFQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
                 F  ++ ME    K ++ TY+ ++ +  +   +D   +LFKE+    +   + TY
Sbjct: 213 ------FDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTY 266

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++    K G   +   +L  M S +  P++ITFN+L+D + K     +  +++K ++ 
Sbjct: 267 NSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMIT 326

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P + T+N+++  Y       +A  +   M   K +P  +T+  +I  Y     V  
Sbjct: 327 RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDD 386

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             ++F  +SK G      T + +++ +C +G    A+ LF+   + GV PD  TY +L
Sbjct: 387 GMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGIL 444



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 151/307 (49%), Gaps = 9/307 (2%)

Query: 26  QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85
           +T  A  +  ++   G  PD + +N LI   L    K   ++KA+    +M     C+P+
Sbjct: 138 KTCFAYSVLGKVMKLGYEPDTTTFNTLING-LCLEGK---VSKAVVLVDRMVE-NGCQPD 192

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           +VTYN ++    ++ +      + +++ E  +  D++TY+ ++D+  ++G I    S+  
Sbjct: 193 MVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFK 252

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
            M++   K  ++T+N L+    K   ++    + K ++  +  P + TFN ++  + K  
Sbjct: 253 EMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEG 312

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVST 263
              +A  ++++M     +P+ ITY  +  M GYC  + +S A  + D + +      + T
Sbjct: 313 KLQEANELYKEMITRGISPNIITYNTL--MDGYCMQNRLSEANNMLDLMVRNKCSPDIVT 370

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
             ++++ YCM     +   +F N    G+  ++ TY +L + + ++   +L ++L + M 
Sbjct: 371 FTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMV 430

Query: 324 QNGIVPN 330
            +G++P+
Sbjct: 431 SHGVLPD 437



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/331 (20%), Positives = 142/331 (42%), Gaps = 5/331 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +S+  + + +  Q  L +    ++  +G   +    N +I           A +  LG  
Sbjct: 91  FSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYS-VLGKV 149

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+ G E   P+  T+N L+        V +   L   + E+   PD+ TYN +++   +
Sbjct: 150 MKL-GYE---PDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICR 205

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G       +L +M+    K D+ T++ +IDS  +    D    +FK +     K ++ T
Sbjct: 206 SGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVT 265

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS++    KA        + + M + +  P+ IT+  ++ ++     +  A E++ E+ 
Sbjct: 266 YNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMI 325

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    + T N +++ YCM    +EA+ + +       +PD  T+  L K Y      +
Sbjct: 326 TRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVD 385

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
              K+ + + + G+V N   +   ++ F  S
Sbjct: 386 DGMKVFRNISKRGLVANAVTYSILVQGFCQS 416



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 140/301 (46%), Gaps = 11/301 (3%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTRDKA 63
           R  + +   ++ L+ V  K+G+ + A  L+ EM   G  P+   YN L+  + +  R   
Sbjct: 292 REIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNR--- 348

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L++A      M    +C P+IVT+  L++     + VD    +F+ + +  L  +  T
Sbjct: 349 --LSEANNMLDLMV-RNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVT 405

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ ++  + ++G IK  E +   M S+   PD++T+ +L+D        +K  ++F+ L 
Sbjct: 406 YSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQ 465

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DN 241
            SK    +  + ++I    K      A  +F  +      P+ +TY  +I+  G C   +
Sbjct: 466 KSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS--GLCKKGS 523

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +S A  +  ++ + G      T N ++ A+  +G  T +  L E   + G + D+S+ K+
Sbjct: 524 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKM 583

Query: 302 L 302
           +
Sbjct: 584 V 584



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 122/294 (41%), Gaps = 4/294 (1%)

Query: 40  SGCRPD-PSVYNALITAHLHTRDKAKALAK--ALGYFQKMKGMERCKPNIVTYNILLRAC 96
           S C  D  S+ N  +      R     + K  A+  FQ+M    R  P +V ++    A 
Sbjct: 40  SSCERDFSSITNGNVCFRERLRSGIVDIKKDDAIALFQEMI-RSRPLPGLVDFSRFFSAI 98

Query: 97  AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
           A+ +  + V    K+L  + +A +IYT N +++ + +        SVL ++     +PD 
Sbjct: 99  ARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDT 158

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
            TFN LI+         K   +   ++ +  +P + T+NS++    ++     A  + +K
Sbjct: 159 TTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRK 218

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M          TY  II        +  A  +F E+   G    V T N+++   C  G 
Sbjct: 219 MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +  LL ++  +  + P+  T+ +L   + K    +   +L K M   GI PN
Sbjct: 279 WNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 8/200 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R  +A+   YS L+    + G+ +LA  LF EM + G  PD   Y  L+       D  
Sbjct: 396 KRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLC---DNG 452

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           K L KAL  F+ ++   +    IV Y  ++    +   V+    LF  L    + P++ T
Sbjct: 453 K-LEKALEIFEDLQK-SKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMT 510

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY---GKRQAFDKMEQVFK 180
           Y  ++    K G + E   +L +M+ +   P+  T+N LI ++   G   A  K+ +  K
Sbjct: 511 YTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMK 570

Query: 181 SLMHSKEKPTLPTFNSMIIN 200
           S   S +  ++     M+++
Sbjct: 571 SCGFSADASSIKMVIDMLLS 590


>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 794

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 154/307 (50%), Gaps = 11/307 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+          A+ LF E++ +G RPD   YNAL+  +  +R   +A+   
Sbjct: 249 DLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAM--- 305

Query: 70  LGYFQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
               + +K ME    +P++VTYN L+ A  +   ++    L +++ +  + PD+YTY  +
Sbjct: 306 ----EVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTL 361

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  +   G  +    V   M+   CKP+I TFN LI  YG R  F++M +VFK +   K 
Sbjct: 362 LSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKC 421

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P + T+N+++  +G+  +  +   VF++M   ++ P   T+  +I+ YG C +  +A  
Sbjct: 422 SPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMA 481

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
            +  + + G    +ST NA+L      GL  +++ +     + G  P+  TY  L  AY 
Sbjct: 482 AYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAY- 540

Query: 308 KANMKEL 314
            AN +E+
Sbjct: 541 -ANGREV 546



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 158/344 (45%), Gaps = 18/344 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI       + R A+ +F +M+  GC P    YNA++  +          AK +   
Sbjct: 182 YTSLITAYANNKKYRDALKVFGKMKEVGCEPTLITYNAILNVY---GKMGMPWAKIIALV 238

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           Q MK      P++ TYN L+  C      ++   LF+E+  +   PD  TYN ++D YGK
Sbjct: 239 QDMK-CHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYGK 297

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +   KE   VL +M+SN  +P ++T+N L+ +Y +    +    + + ++    KP + T
Sbjct: 298 SRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYT 357

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + +++  +  A  +  A  VF++M  +   P+  T+  +I MYG        R  F+E+ 
Sbjct: 358 YTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYG-------DRGKFEEMV 410

Query: 254 KLGKDMKVS-------TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           K+ K++KV        T N +L  +  NG+ +E   +FE        P+  T+  L  AY
Sbjct: 411 KVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAY 470

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
            +    +      KRM + G+ P+   +   L T +      QS
Sbjct: 471 GRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQS 514



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 170/391 (43%), Gaps = 75/391 (19%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L++     G+  LAM +F EMR  GC+P+   +NALI  +   R K + + K 
Sbjct: 354 DVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMY-GDRGKFEEMVKV 412

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQ------------------------------- 98
              F+++K + +C P+IVT+N LL    Q                               
Sbjct: 413 ---FKEIK-VCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLIS 468

Query: 99  ----ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
                 + DQ  A +K + E+ ++PD+ TYN V+    + G+ ++ E VL+ MK   CKP
Sbjct: 469 AYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKP 528

Query: 155 DIITFNLLIDSYGKRQAFDKM----EQVFKS-------------LMHSKE---------- 187
           + +T++ L+ +Y   +  ++M    E+++               L++SK           
Sbjct: 529 NEVTYSSLLHAYANGREVERMNALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVETERAF 588

Query: 188 --------KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
                    P + T N+M+  YG+ ++  KA  +   M     T S  +Y  ++ MY   
Sbjct: 589 LEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSRT 648

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           +N  ++ +IF E+   G +  V + N ++ AYC N +  EA  + E        PD  TY
Sbjct: 649 ENFHKSEQIFREILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTY 708

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                AY   +M      +++ M + G  PN
Sbjct: 709 NTFIAAYAADSMFVEAIDVIRYMIKQGCKPN 739



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 156/355 (43%), Gaps = 44/355 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+ V GK  + + AM +  +M ++  RP    YN+L++A++    +   L  A
Sbjct: 284 DAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYV----RGGLLEDA 339

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           L   +KM  KG+   KP++ TY  LL     A   +    +F+E+ +    P+I T+N +
Sbjct: 340 LVLKRKMVDKGI---KPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNAL 396

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  YG  G  +EM  V   +K  +C PDI+T+N L+  +G+     ++  VF+ +  S+ 
Sbjct: 397 IKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRF 456

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P   TFN++I  YG+     +A   +++M     +P   TY  ++          ++ +
Sbjct: 457 APERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEK 516

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYC-------MNGLPTE--------------------- 279
           +  E+   G      T +++L AY        MN L  E                     
Sbjct: 517 VLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTIKTHAVLLKTLVLVNS 576

Query: 280 -ADLLFENSHNM------GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
             DLL E           G++PD +T   +   Y +  M     ++L  M ++G+
Sbjct: 577 KVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGL 631



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 143/315 (45%), Gaps = 10/315 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M++ R +  +   ++ LI+  G+ G    AM  +  M  +G  PD S YNA+    L T 
Sbjct: 451 MKRSR-FAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAV----LATL 505

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +     ++     +MK    CKPN VTY+ LL A A  R V+++NAL +E++   +   
Sbjct: 506 ARGGLWEQSEKVLAEMKD-GGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTIKTH 564

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
                 ++    K  ++ E E      +     PD+ T N ++  YG+++   K  ++  
Sbjct: 565 AVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILN 624

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +  S    +L ++NS++  Y +     K+E +F+++      P  I+Y  +I  Y YC 
Sbjct: 625 FMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVI--YAYCR 682

Query: 241 N--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
           N  +  A+ I +E+        V T N  + AY  + +  EA  +       G  P+ +T
Sbjct: 683 NDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPNHNT 742

Query: 299 YKLLYKAYTKANMKE 313
           Y  +   Y K  +++
Sbjct: 743 YNSIVDWYCKLKLRD 757



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 110/241 (45%), Gaps = 1/241 (0%)

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
           +++    +   V +  +L   L       D+Y Y  ++ AY  N   ++   V  +MK  
Sbjct: 149 VIVSILGKTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEV 208

Query: 151 QCKPDIITFNLLIDSYGKR-QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
            C+P +IT+N +++ YGK    + K+  + + +      P L T+N++I       L  +
Sbjct: 209 GCEPTLITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEE 268

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  +F+++    + P  +TY  ++ +YG       A E+  ++        V T N+++ 
Sbjct: 269 ALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVS 328

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           AY   GL  +A +L     + G+ PD  TY  L   +  A  +EL  ++ + M + G  P
Sbjct: 329 AYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKP 388

Query: 330 N 330
           N
Sbjct: 389 N 389



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 151/369 (40%), Gaps = 76/369 (20%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           +  R  + +  + + +++++GK G+   A  L   +   G   D   Y +LITA+ +   
Sbjct: 135 RNDRVSLLNGSVIAVIVSILGKTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANN-- 192

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             K    AL  F KMK +  C+P ++T                                 
Sbjct: 193 --KKYRDALKVFGKMKEVG-CEPTLIT--------------------------------- 216

Query: 122 YTYNGVMDAYGKNGM-IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             YN +++ YGK GM   ++ +++  MK +   PD+ T+N LI        +++   +F+
Sbjct: 217 --YNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFE 274

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY---- 236
            +  +  +P   T+N+++  YGK+R   +A  V ++M +  + PS +TY  +++ Y    
Sbjct: 275 EIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGG 334

Query: 237 -----------------------------GYCDNVSR--AREIFDELSKLGKDMKVSTLN 265
                                        G+ +      A E+F+E+ K+G    + T N
Sbjct: 335 LLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFN 394

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
           A+++ Y   G   E   +F+       +PD  T+  L   + +  M   V  + + M+++
Sbjct: 395 ALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRS 454

Query: 326 GIVPNKRFF 334
              P +  F
Sbjct: 455 RFAPERDTF 463


>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
          Length = 1435

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 161/326 (49%), Gaps = 3/326 (0%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           A   +++ ++ V  + G+   A  L   M + G  PD   +N LI A   +   A  +A 
Sbjct: 219 ATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVAL 278

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
            L +  +  G+   +P+++TYN L+ AC+Q+ N++    +F+++  S   PD++TYN ++
Sbjct: 279 DLLFEVRQSGL---RPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMV 335

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
             +G+ G  +E E +   +      PD IT+N L+ ++ K    DK+E   + L+ +  K
Sbjct: 336 SVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFK 395

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
               T+N+MI  YGK      A  ++ +M AM  TP  +TY  +I   G  + ++ A ++
Sbjct: 396 KNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKV 455

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            ++++  G    +   +A++ AY   G   +A+  F+     GV PD   Y ++   + +
Sbjct: 456 LEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFAR 515

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
           +   E +  L ++M  +   P+   +
Sbjct: 516 SGDTEKMLCLYRKMMNDNYRPDDDMY 541



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 164/332 (49%), Gaps = 13/332 (3%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALGYFQ 74
           ++ V+G+  Q  +A  +F  +R +G      V+NA++  +  +   D A+ L   +    
Sbjct: 194 VLGVLGRARQDSIAEEVF--LRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTM---- 247

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNAL--FKELHESILAPDIYTYNGVMDAYG 132
             +G++   P++V++N L+ A +++  +    AL    E+ +S L PD+ TYN ++ A  
Sbjct: 248 HDRGID---PDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACS 304

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           ++  +++  +V   M +++C+PD+ T+N ++  +G+    ++ E++F+ L+     P   
Sbjct: 305 QSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAI 364

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+NS++  + K     K E+  +++    +  + ITY  +I MYG    +  A  ++DE+
Sbjct: 365 TYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEM 424

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
             +G      T   M+++        EA  + E+  + G+ P    +  L  AY K   +
Sbjct: 425 RAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRR 484

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
              +     M  +G+ P++  +L  L+ F+ S
Sbjct: 485 ADAENTFDCMIASGVKPDRLAYLVMLDVFARS 516



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/361 (20%), Positives = 159/361 (44%), Gaps = 42/361 (11%)

Query: 10   DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
            D  I++ LI    + G    A  +F  M  +G  P     N ++ A L    +   L   
Sbjct: 779  DRRIWNALIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRA-LIVDGRLDELYVV 837

Query: 70   LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            +   Q M      K +  T  +LL A A+A +V +V  ++  +  +   P+++ Y  ++ 
Sbjct: 838  VEELQDMN----FKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMIS 893

Query: 130  AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
                +   +++E +++ M+    KPD+   N L++ Y     FD+  QV++S++ +  +P
Sbjct: 894  LLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEP 953

Query: 190  TLPTFNSMIINY-----------------------------------GKARLQGKAEYVF 214
               T+N++I+ Y                                    KA L+ +A+ +F
Sbjct: 954  DEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIF 1013

Query: 215  QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
            ++M +  Y  +   Y  ++ +Y    N S+A  +   + + G +  ++T++ ++ +Y   
Sbjct: 1014 EEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTA 1073

Query: 275  GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKLLKRMEQNGIVPNKRF 333
            G P EA+ +  N  +  +   +  Y  ++ AY K  +      KLL+ M+++G+ P+ + 
Sbjct: 1074 GQPREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLE-MKRDGVEPDHQV 1132

Query: 334  F 334
            +
Sbjct: 1133 W 1133



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 132/317 (41%), Gaps = 21/317 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH--TRDKAKALA 67
           D   Y+ +++V G+ G+   A  LF E+   G  PD   YN+L+ A       DK +   
Sbjct: 327 DLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTC 386

Query: 68  KAL---GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           + L   G+          K N +TYN ++    +   +D    L+ E+      PD  TY
Sbjct: 387 EQLVKAGF----------KKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTY 436

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
             ++D+ GK   I E   VL  M     KP +I F+ LI +Y K       E  F  ++ 
Sbjct: 437 TVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIA 496

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
           S  KP    +  M+  + ++    K   +++KM    Y P    Y+ ++      D    
Sbjct: 497 SGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCEE 556

Query: 245 AREIFDELSKLGKDMKVSTLNAML-EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
             E+  ++  L + M +  ++ ML +A C+    ++   L + +   G  PD  + + + 
Sbjct: 557 IEEVIQDMELLCR-MNLGIISTMLIKARCV----SQGAKLLKKACLQGYKPDIKSLRSIM 611

Query: 304 KAYTKANMKELVQKLLK 320
            AY      E    LL+
Sbjct: 612 NAYVMTEKHEEGLSLLE 628



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 129/316 (40%), Gaps = 22/316 (6%)

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA-RNVDQVNALFKELHESILAP 119
           D A+A    + +  +  G    +  +  +  L R+ A A R V  V  +     +  +A 
Sbjct: 149 DGARASPDEVAFVVRAVGESSWRRALDAFEWLARSSAPASRAVAVVLGVLGRARQDSIAE 208

Query: 120 DIY-----------TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
           +++            +N +M  Y ++G   +   +L  M      PD+++FN LI++  K
Sbjct: 209 EVFLRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSK 268

Query: 169 RQ------AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
                   A D + +V +S +    +P + T+N++I    ++     A  VF+ M A + 
Sbjct: 269 SGCLAAGVALDLLFEVRQSGL----RPDVITYNTLISACSQSSNLEDAVTVFEDMIASEC 324

Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
            P   TY  +++++G C     A  +F EL + G      T N++L A+   G   + + 
Sbjct: 325 RPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEH 384

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
             E     G   +  TY  +   Y K    +L   L   M   G  P+   +   +++  
Sbjct: 385 TCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLG 444

Query: 343 SSLAGSQSGSAKTDLT 358
                +++G    D+T
Sbjct: 445 KMNRIAEAGKVLEDMT 460



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 137/335 (40%), Gaps = 15/335 (4%)

Query: 17   LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT---RDKAKALAKALGYF 73
            L+    K G     M +++ M+ +G  P+  +Y ++I+   H    RD    +A+  G  
Sbjct: 856  LLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEG-- 913

Query: 74   QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
                G    KP++   N LL     A N D+   +++ + E+ L PD  TYN ++  Y +
Sbjct: 914  ---AGF---KPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCR 967

Query: 134  NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            +   +E  ++L+ M      P + ++  L+ +  K +  ++ +Q+F+ +     +     
Sbjct: 968  SFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSI 1027

Query: 194  FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            ++ M+  Y  A    KAE +   M      P+  T   ++T YG       A  + + L 
Sbjct: 1028 YHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLK 1087

Query: 254  KLGKDMKVSTL--NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
                 ++VSTL  + + +AY  NG               GV PD   +    +A +    
Sbjct: 1088 --SSSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVEPDHQVWTCFIRAASLCEQ 1145

Query: 312  KELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLA 346
                  LLK ++  G     R   E   +  S +A
Sbjct: 1146 TADAILLLKSLQDCGFDLPIRLLTERTPSLLSEIA 1180



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/271 (19%), Positives = 122/271 (45%), Gaps = 9/271 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++ ++ D   Y+ L+    K+G          ++  +G + +   YN +I    H   K 
Sbjct: 356 EKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMI----HMYGKM 411

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L  A+G + +M+ M  C P+ VTY +++ +  +   + +   + +++ ++ L P +  
Sbjct: 412 GRLDLAVGLYDEMRAMG-CTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIA 470

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           ++ ++ AY K G   + E+    M ++  KPD + + +++D + +    +KM  +++ +M
Sbjct: 471 FSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMM 530

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
           +   +P    +  +++   K     + E V Q M  +      +    I TM      VS
Sbjct: 531 NDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQDMELL----CRMNLGIISTMLIKARCVS 586

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           +  ++  +    G    + +L +++ AY M 
Sbjct: 587 QGAKLLKKACLQGYKPDIKSLRSIMNAYVMT 617



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 166/400 (41%), Gaps = 76/400 (19%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA-------- 65
           Y+ +I + GK G+  LA+ L+ EMR  GC PD   Y  +I +       A+A        
Sbjct: 401 YNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMT 460

Query: 66  ---LAKALGYFQKM-----KGMERC--------------KPNIVTYNILLRACAQARNVD 103
              L   L  F  +     KG  R               KP+ + Y ++L   A++ + +
Sbjct: 461 DAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTE 520

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI-ITFNLL 162
           ++  L++++      PD   Y  ++ A  K    +E+E V+  M+   C+ ++ I   +L
Sbjct: 521 KMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQDMEL-LCRMNLGIISTML 579

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY--------GKARLQGKAEYV- 213
           I    K +   +  ++ K       KP + +  S++  Y        G + L+   E+V 
Sbjct: 580 I----KARCVSQGAKLLKKACLQGYKPDIKSLRSIMNAYVMTEKHEEGLSLLECICEHVS 635

Query: 214 --------------FQKMTAM----KYTPSFIT---------YECIITMYGYCDNVSRAR 246
                          +K T++    +Y+   +          YE +IT     +  S A 
Sbjct: 636 FSQDLISECSIMLLCRKQTSISAYEQYSQRLMLKYPGQNCNLYEYLITCLIEAEFFSEAC 695

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS-STYKLLYKA 305
           ++F ++  +G +   S   +++  YC  G P  A  L +++   G+  +  S   ++ +A
Sbjct: 696 QVFCDMQFIGIEASKSIYESIISTYCKLGFPETAHRLMDDALQSGIPLNILSCRVIIIEA 755

Query: 306 YTKANMKELVQKLLKRMEQ-NGIVPNKRFFLEALETFSSS 344
           Y K  + +  + L+K + Q +GI  ++R +   +  ++ S
Sbjct: 756 YGKIKLWQQAEILVKGLRQASGI--DRRIWNALIHAYAES 793



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 106/258 (41%), Gaps = 8/258 (3%)

Query: 91   ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
            I++ A  + +   Q   L K L ++    D   +N ++ AY ++G+ ++  +V   M   
Sbjct: 751  IIIEAYGKIKLWQQAEILVKGLRQAS-GIDRRIWNALIHAYAESGLYEKARAVFDNMIKT 809

Query: 151  QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
               P + + N ++ +       D++  V + L     K +  T   ++  + KA    + 
Sbjct: 810  GPLPTVDSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEV 869

Query: 211  EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
              ++  M A  Y P+   Y  +I++  + +       +  E+   G    ++ LNA+L  
Sbjct: 870  MKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNM 929

Query: 271  YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            Y   G       ++ +    G+ PD  TY  L   Y ++   E    LL  M + G+ P 
Sbjct: 930  YTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPK 989

Query: 331  KRFFLEALETFSSSLAGS 348
                   L+++ S LA S
Sbjct: 990  -------LQSYKSLLAAS 1000


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 163/375 (43%), Gaps = 54/375 (14%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G T  A+ L   M    C+P+  V++ LI +      K + + +A   F
Sbjct: 178 YGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLC----KDRQVTEAFNIF 233

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  KG+    PNIVTYN L+    +      V  L  E+ +S + PD++T N V+DA 
Sbjct: 234 SEMITKGI---SPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDAL 290

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K GM+ E   V+  M     +P+++T+N L+D +  R   D   +VF +++H      +
Sbjct: 291 CKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANV 350

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            ++N++I  Y K +   KA Y+F++M+  + TP+ +TY  +I    +   +  A  +F E
Sbjct: 351 ISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHE 410

Query: 252 LSKLGK-----------------------------------DMKVSTLNAMLEAYCMNGL 276
           +   G+                                   D  +     +L+  C  G 
Sbjct: 411 MVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGE 470

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK----- 331
             +A  LF N  + G+ P+  TY ++     K  +     KL   M +NG  PN      
Sbjct: 471 LEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNL 530

Query: 332 --RFFL---EALETF 341
             R FL   EAL T 
Sbjct: 531 ITRGFLRNNEALRTI 545



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 130/322 (40%), Gaps = 15/322 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT----AHLHTRDKA-KALAK 68
           +++L+  + K       + L  +M + G  PD  VY   I      HL+  D A  ALAK
Sbjct: 73  FNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPD--VYTLAIVINSLCHLNRVDFAFSALAK 130

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
            L    +        P+  T+  L+R       + +   LF ++      P++ TY  ++
Sbjct: 131 ILKLGHQ--------PDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLI 182

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           +   K G       +L  M+   C+P+++ F+ LIDS  K +   +   +F  ++     
Sbjct: 183 NGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGIS 242

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P + T+NS+I    K         +  +M   K  P   T   ++        V+ A ++
Sbjct: 243 PNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDV 302

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            D +   G +  V T NA+++ +C+      A  +F+   +     +  +Y  L   Y K
Sbjct: 303 VDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCK 362

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
               +    L + M +  + PN
Sbjct: 363 IQSVDKAMYLFEEMSRQELTPN 384



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 119/276 (43%), Gaps = 5/276 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M   R    +   Y+ L+     + +  +A+ +F  M +  C  +   YN LI  +    
Sbjct: 305 MMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYC--- 361

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K +++ KA+  F++M   E   PN VTYN L+        +    +LF E+      PD
Sbjct: 362 -KIQSVDKAMYLFEEMSRQE-LTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPD 419

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TY  + D   KN  + +  ++L  ++ +   PDI  +  ++D   +    +    +F 
Sbjct: 420 LVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFS 479

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           +L     +P + T+N MI    K  L  +A  +F +M     +P+  TY  I   +   +
Sbjct: 480 NLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNN 539

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
              R  E+ +E+   G  + VST   ++     +GL
Sbjct: 540 EALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGL 575



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 137/329 (41%), Gaps = 51/329 (15%)

Query: 44  PDP---SVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR 100
           P P   S +N   +  LH       L +AL  F +M   ++  P+ V +N LL + A+ +
Sbjct: 30  PPPFLSSSHNTFHSKPLH----FNTLDEALSTFNRMLH-KQPPPSTVDFNRLLTSIAKTK 84

Query: 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
           +   + +L +++    + PD+YT   V+++      +    S L+++     +PD  TF 
Sbjct: 85  HHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFT 144

Query: 161 LLIDSY---GK----RQAFDKM----------------------------EQVFKSLMHS 185
            LI      GK       FDKM                             ++ +S+   
Sbjct: 145 TLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQG 204

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVS 243
             +P +  F+++I +  K R   +A  +F +M     +P+ +TY  +I  +G C      
Sbjct: 205 NCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLI--HGLCKLCEWK 262

Query: 244 RAREIFDEL--SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
               + +E+  SK+  D  V TLN +++A C  G+  EA  + +   + GV P+  TY  
Sbjct: 263 HVTTLMNEMVDSKIMPD--VFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNA 320

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           L   +   N  ++  K+   M     V N
Sbjct: 321 LMDGHCLRNEVDVAVKVFDTMVHKDCVAN 349



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 63/164 (38%)

Query: 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
             D+    F  ++H +  P+   FN ++ +  K +       + ++M +    P   T  
Sbjct: 50  TLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLA 109

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
            +I    + + V  A     ++ KLG     +T   ++   C+ G   EA  LF+     
Sbjct: 110 IVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGE 169

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           G  P+  TY  L     K        +LL+ MEQ    PN   F
Sbjct: 170 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVF 213



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 5/138 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  IY+ ++  M + G+   A  LFS + + G +P+   YN +I    H   K   LA+A
Sbjct: 454 DIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMI----HGLCKQGLLAEA 509

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F +M     C PN  TYN++ R   +     +   L +E+     + D+ T   ++ 
Sbjct: 510 SKLFSEMNK-NGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVG 568

Query: 130 AYGKNGMIKEMESVLSRM 147
               +G+ + ++ +L ++
Sbjct: 569 MLSDDGLDQSVKQILCKI 586


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 163/375 (43%), Gaps = 54/375 (14%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G T  A+ L   M    C+P+  V++ LI +      K + + +A   F
Sbjct: 178 YGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLC----KDRQVTEAFNIF 233

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  KG+    PNIVTYN L+    +      V  L  E+ +S + PD++T N V+DA 
Sbjct: 234 SEMITKGIS---PNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDAL 290

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K GM+ E   V+  M     +P+++T+N L+D +  R   D   +VF +++H      +
Sbjct: 291 CKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANV 350

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            ++N++I  Y K +   KA Y+F++M+  + TP+ +TY  +I    +   +  A  +F E
Sbjct: 351 ISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHE 410

Query: 252 LSKLGK-----------------------------------DMKVSTLNAMLEAYCMNGL 276
           +   G+                                   D  +     +L+  C  G 
Sbjct: 411 MVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGE 470

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK----- 331
             +A  LF N  + G+ P+  TY ++     K  +     KL   M +NG  PN      
Sbjct: 471 LEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNL 530

Query: 332 --RFFL---EALETF 341
             R FL   EAL T 
Sbjct: 531 ITRGFLRNNEALRTI 545



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 130/322 (40%), Gaps = 15/322 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT----AHLHTRDKA-KALAK 68
           +++L+  + K       + L  +M + G  PD  VY   I      HL+  D A  ALAK
Sbjct: 73  FNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPD--VYTLAIVINSLCHLNRVDFAFSALAK 130

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
            L    +        P+  T+  L+R       + +   LF ++      P++ TY  ++
Sbjct: 131 ILKLGHQ--------PDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLI 182

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           +   K G       +L  M+   C+P+++ F+ LIDS  K +   +   +F  ++     
Sbjct: 183 NGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGIS 242

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P + T+NS+I    K         +  +M   K  P   T   ++        V+ A ++
Sbjct: 243 PNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDV 302

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            D +   G +  V T NA+++ +C+      A  +F+   +     +  +Y  L   Y K
Sbjct: 303 VDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCK 362

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
               +    L + M +  + PN
Sbjct: 363 IQSVDKAMYLFEEMSRQELTPN 384



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 119/276 (43%), Gaps = 5/276 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M   R    +   Y+ L+     + +  +A+ +F  M +  C  +   YN LI  +    
Sbjct: 305 MMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYC--- 361

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K +++ KA+  F++M   E   PN VTYN L+        +    +LF E+      PD
Sbjct: 362 -KIQSVDKAMYLFEEMSRQEL-TPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPD 419

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TY  + D   KN  + +  ++L  ++ +   PDI  +  ++D   +    +    +F 
Sbjct: 420 LVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFS 479

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           +L     +P + T+N MI    K  L  +A  +F +M     +P+  TY  I   +   +
Sbjct: 480 NLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNN 539

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
              R  E+ +E+   G  + VST   ++     +GL
Sbjct: 540 EALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGL 575



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 129/305 (42%), Gaps = 44/305 (14%)

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            L +AL  F +M   ++  P+ V +N LL + A+ ++   + +L +++    + PD+YT 
Sbjct: 50  TLDEALSTFNRMLH-KQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 108

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY---GK----RQAFDKM-- 175
             V+++      +    S L+++     +PD  TF  LI      GK       FDKM  
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 168

Query: 176 --------------------------EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
                                      ++ +S+     +P +  F+++I +  K R   +
Sbjct: 169 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTE 228

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDEL--SKLGKDMKVSTLN 265
           A  +F +M     +P+ +TY  +I  +G C          + +E+  SK+  D  V TLN
Sbjct: 229 AFNIFSEMITKGISPNIVTYNSLI--HGLCKLCEWKHVTTLMNEMVDSKIMPD--VFTLN 284

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            +++A C  G+  EA  + +   + GV P+  TY  L   +   N  ++  K+   M   
Sbjct: 285 TVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHK 344

Query: 326 GIVPN 330
             V N
Sbjct: 345 DCVAN 349



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 66/172 (38%)

Query: 170 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
              D+    F  ++H +  P+   FN ++ +  K +       + ++M +    P   T 
Sbjct: 49  NTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 108

Query: 230 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289
             +I    + + V  A     ++ KLG     +T   ++   C+ G   EA  LF+    
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 168

Query: 290 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            G  P+  TY  L     K        +LL+ MEQ    PN   F   +++ 
Sbjct: 169 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSL 220



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 5/137 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  IY+ ++  M + G+   A  LFS + + G +P+   YN +I    H   K   LA+A
Sbjct: 454 DIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMI----HGLCKQGLLAEA 509

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F +M     C PN  TYN++ R   +     +   L +E+     + D+ T   ++ 
Sbjct: 510 SKLFSEMNK-NGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVG 568

Query: 130 AYGKNGMIKEMESVLSR 146
               +G+ + ++ +L +
Sbjct: 569 MLSDDGLDQSVKQILCK 585


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 151/310 (48%), Gaps = 5/310 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I+   K G+ R A  L  +M   GCRPD +  + LI A      KA A+  A    
Sbjct: 408 YSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALC----KAAAIDSAQELL 463

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +   GM+ C P++V Y+IL+ A  +A+ + +  +    + ++   PD+ TYN V+D   K
Sbjct: 464 RMSIGMD-CAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCK 522

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +  I +   +  RM++    PD++T++++I S+ K    D   ++ + +  +K  P + T
Sbjct: 523 SRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVT 582

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           ++++I    KA    KA  VFQ+M      P+ +TY  +I      + V +A E+ + + 
Sbjct: 583 YSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMR 642

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           K        T   ++   C      EA  +     + G  PD  TY  L +A  K N  E
Sbjct: 643 KQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLE 702

Query: 314 LVQKLLKRME 323
           LV++LLK ME
Sbjct: 703 LVEQLLKEME 712



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 149/328 (45%), Gaps = 6/328 (1%)

Query: 4    QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            ++ Y+ +   Y+ L+ +  KK +   A  L S M   GC P+   YN +I        KA
Sbjct: 1081 EKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLC----KA 1136

Query: 64   KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
              + + +   ++M     C P+IVT+N ++ A  +   VD    LF  + ES   P++ T
Sbjct: 1137 TKVHEGVLLLEQMLS-NNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVT 1195

Query: 124  YNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            YN ++    K+    + E +L  M   Q C PDIIT+N +ID   K +  D+  ++F  +
Sbjct: 1196 YNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQM 1255

Query: 183  MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
            +     P   T++ +I +  K R   +A  V + M    + P  ITY  +I  +    N+
Sbjct: 1256 LSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNL 1315

Query: 243  SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             +A EI   L   G    V T +  ++     G   +A  L E     G+ PD+ TY  L
Sbjct: 1316 DKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTL 1375

Query: 303  YKAYTKANMKELVQKLLKRMEQNGIVPN 330
             K +  A++ E    L + M Q G  P+
Sbjct: 1376 LKGFCDASLTEDAVDLFEVMRQCGCEPD 1403



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 152/322 (47%), Gaps = 6/322 (1%)

Query: 10   DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
            D   YS ++  + K G+   A  L  +M + GC P+   Y++L    LH   KA  L +A
Sbjct: 947  DVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSL----LHGLCKAGKLDEA 1002

Query: 70   LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                Q+M     C PNIVTYN ++    +   +D+   L +E+ +    P++ TY  ++D
Sbjct: 1003 TALLQRMT-RSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLD 1061

Query: 130  AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            A+ K G  ++   ++  M      P++ T+N L+D + K+   ++  Q+  S++     P
Sbjct: 1062 AFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVP 1121

Query: 190  TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
             + ++N++I    KA    +   + ++M +    P  +T+  II        V  A E+F
Sbjct: 1122 NVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELF 1181

Query: 250  DELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKLLYKAYTK 308
            + + + G    + T N+++   C +    +A+ LL E +   G +PD  TY  +     K
Sbjct: 1182 NLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCK 1241

Query: 309  ANMKELVQKLLKRMEQNGIVPN 330
            +   +   KL  +M  +G+ P+
Sbjct: 1242 SKRVDRAYKLFLQMLSDGLAPD 1263



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 150/313 (47%), Gaps = 8/313 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            DT  YS LI+   + G+   A  LF EM   G +    V+ +++         A   + 
Sbjct: 159 GDTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLC----DAGQCSD 214

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A+ +F++M   + C P+ VTYN ++   +++  +D    L +E+ ++  AP++++YN V+
Sbjct: 215 AVLHFREMS--KTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVL 272

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
             + K   ++    +L +M +  C PD++++  +I+   K    D+  +V   ++    +
Sbjct: 273 HGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQ 332

Query: 189 PTLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           P + T+ +++  + +   L G  E V +KMT   Y P+ ITY  I+ ++   +++ RA +
Sbjct: 333 PNVITYGTLVDGFCRVGDLDGAVELV-RKMTERGYRPNAITYNNIMHVFCRRNDMERAHQ 391

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +   + + G        + ++  +C  G   EA  L E     G  PD +    L  A  
Sbjct: 392 VLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALC 451

Query: 308 KANMKELVQKLLK 320
           KA   +  Q+LL+
Sbjct: 452 KAAAIDSAQELLR 464



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 148/329 (44%), Gaps = 7/329 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R Y  +   Y+ ++ V  ++     A  +   M  +GC PD   Y+ +I+       KA
Sbjct: 363 ERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFC----KA 418

Query: 64  KALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
             L +A    ++M  + R C+P++   + L+ A  +A  +D    L +       APD+ 
Sbjct: 419 GKLREAHDLLEQM--IRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVV 476

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            Y+ ++ A  K   + E ES L  M  N+C PD++T+N ++D   K +  +    +F  +
Sbjct: 477 AYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRM 536

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
             +   P + T++ +I ++ K      A  + ++M   K  P  +TY  +I        V
Sbjct: 537 RAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTV 596

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A ++F E+   G    + T N +++  C      +A  + E       TPDS TY  L
Sbjct: 597 DKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCL 656

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNK 331
                 A+  E   ++L+ M+  G +P++
Sbjct: 657 INGLCNASRLEEAWRVLREMKDKGCLPDR 685



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 147/320 (45%), Gaps = 10/320 (3%)

Query: 14   YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
            ++ LI  + + G    A  L  EM   G   +  ++N +I         A+ L  AL  F
Sbjct: 880  FTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLC----SARKLDSALELF 935

Query: 74   QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++M+    C P++ TY+ ++ +  ++  VD    L +++     +P++ TY+ ++    K
Sbjct: 936  KEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCK 995

Query: 134  NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
             G + E  ++L RM  + C P+I+T+N +ID + K    D+   + + ++    +P + T
Sbjct: 996  AGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVT 1055

Query: 194  FNSMIINYGKARLQGKAE---YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
            +  ++  + K    GKAE    + + M    Y P+  TY  ++ M+   D V RA ++  
Sbjct: 1056 YTVLLDAFCKC---GKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLS 1112

Query: 251  ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
             + + G    V + N ++   C      E  LL E   +    PD  T+  +  A  K  
Sbjct: 1113 SMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTY 1172

Query: 311  MKELVQKLLKRMEQNGIVPN 330
              ++  +L   ++++G  PN
Sbjct: 1173 RVDIAYELFNLIQESGCTPN 1192



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 143/322 (44%), Gaps = 15/322 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ ++    K  +   A+WL  +M   GC PD   Y  +I        K   + +A    
Sbjct: 268 YNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLC----KLDQVDEACRVM 323

Query: 74  QKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            KM  ++R C+PN++TY  L+    +  ++D    L +++ E    P+  TYN +M  + 
Sbjct: 324 DKM--IQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFC 381

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQVFKSLMHSKEK 188
           +   ++    VL  M    C PD I ++ +I  + K    R+A D +EQ+ +       +
Sbjct: 382 RRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIR----RGCR 437

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P +   +++I    KA     A+ + +    M   P  + Y  +I        +  A   
Sbjct: 438 PDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESW 497

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            D + K      V T N++++  C +    +A LLF+     GV PD  TY ++  ++ K
Sbjct: 498 LDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCK 557

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
            N  +   K+L+RM++   VP+
Sbjct: 558 DNNLDSAFKMLERMKEAKCVPD 579



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 150/332 (45%), Gaps = 7/332 (2%)

Query: 4    QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            Q+  + +   Y+ +IA + K  +    + L  +M ++ C PD   +N +I A   T  + 
Sbjct: 1116 QKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTY-RV 1174

Query: 64   KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL-HESILAPDIY 122
                +     Q+      C PN+VTYN L+    ++R  DQ   L +E+  +   +PDI 
Sbjct: 1175 DIAYELFNLIQE----SGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDII 1230

Query: 123  TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            TYN V+D   K+  +     +  +M S+   PD +T++++I S  K +  D+   V + +
Sbjct: 1231 TYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELM 1290

Query: 183  MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
            + +   P   T+ ++I  + K     KA  + Q + +    P  +T+   I        +
Sbjct: 1291 LKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRL 1350

Query: 243  SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY-KL 301
             +A E+ + + + G      T N +L+ +C   L  +A  LFE     G  PD++TY  L
Sbjct: 1351 RQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTL 1410

Query: 302  LYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
            +     K + K+L+ ++ K M   G   N   
Sbjct: 1411 VGHLVDKKSYKDLLAEVSKSMVDTGFKLNHEL 1442



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 139/324 (42%), Gaps = 10/324 (3%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           A  G++  ++  +   GQ   A+  F EM  + C PD   YN +I        K+  L  
Sbjct: 194 AHAGVHKSILRGLCDAGQCSDAVLHFREMSKT-CPPDSVTYNTMING----LSKSDRLDD 248

Query: 69  ALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A+   ++M   G     PN+ +YN +L    +A  V+    L +++      PD+ +Y  
Sbjct: 249 AIRLLEEMVDNGF---APNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTT 305

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           V++   K   + E   V+ +M    C+P++IT+  L+D + +    D   ++ + +    
Sbjct: 306 VINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERG 365

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P   T+N+++  + +     +A  V Q M      P  I Y  II+ +     +  A 
Sbjct: 366 YRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAH 425

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           ++ +++ + G    V+ L+ +++A C       A  L   S  M   PD   Y +L  A 
Sbjct: 426 DLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHAL 485

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            KA      +  L  M +N   P+
Sbjct: 486 CKAKRLPEAESWLDVMVKNRCYPD 509



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 9/192 (4%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M K R Y  D   Y+ ++  + K  +   A  LF  MR +G  PD   Y+ +I    H+ 
Sbjct: 501 MVKNRCY-PDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVI----HSF 555

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K   L  A    ++MK   +C P++VTY+ L+    +A  VD+   +F+E+     AP+
Sbjct: 556 CKDNNLDSAFKMLERMKE-AKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPN 614

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TYN ++D   K   +++   +L  M+   C PD IT+  LI+         ++E+ ++
Sbjct: 615 LVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNAS---RLEEAWR 671

Query: 181 SLMHSKEKPTLP 192
            L   K+K  LP
Sbjct: 672 VLREMKDKGCLP 683



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 5/180 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   YS +I    K      A  +   M+ + C PD   Y+ALI        KA  + 
Sbjct: 542 MPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLC----KAGTVD 597

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           KA   FQ+M G   C PN+VTYN L+    +   V+Q   + + + +    PD  TY  +
Sbjct: 598 KAFDVFQEMLGCG-CAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCL 656

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++       ++E   VL  MK   C PD +T+  L+ +  K    + +EQ+ K +  ++E
Sbjct: 657 INGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEATEE 716



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/296 (20%), Positives = 118/296 (39%), Gaps = 34/296 (11%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL +F+  +  +  +  I   N LL    +A    Q + LF+   E     D  TY+ ++
Sbjct: 109 ALVFFEWAETRDGYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLI 168

Query: 129 DAYGKNGMI-------KEM--------------------------ESVLS-RMKSNQCKP 154
             + + G I        EM                          ++VL  R  S  C P
Sbjct: 169 SGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPP 228

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           D +T+N +I+   K    D   ++ + ++ +   P + ++N+++  + KA     A ++ 
Sbjct: 229 DSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLL 288

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           ++M      P  ++Y  +I      D V  A  + D++ + G    V T   +++ +C  
Sbjct: 289 EQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRV 348

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           G    A  L       G  P++ TY  +   + + N  E   ++L+ M Q G  P+
Sbjct: 349 GDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPD 404



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 123/276 (44%), Gaps = 7/276 (2%)

Query: 69   ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
            ALG+F      E    +  T N LL+A  + +       +++  ++   +P+++T+  ++
Sbjct: 827  ALGFFDWATSQEGYNHDTYTCNCLLQALLRLKRPKDALQVYR--NKLCCSPNMFTFTILI 884

Query: 129  DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE- 187
                + G I     +L  M  +    ++I  N++I      +  D   ++FK +  S   
Sbjct: 885  HGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSC 944

Query: 188  KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRA 245
             P + T+++++ +  K+     A  + + M +   +P+ +TY  +  ++G C    +  A
Sbjct: 945  PPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSL--LHGLCKAGKLDEA 1002

Query: 246  REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
              +   +++ G    + T N +++ +C  G   EA  L E   + G  P+  TY +L  A
Sbjct: 1003 TALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDA 1062

Query: 306  YTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            + K    E    L++ M + G VPN   +   L+ F
Sbjct: 1063 FCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMF 1098



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 88/421 (20%), Positives = 159/421 (37%), Gaps = 108/421 (25%)

Query: 8    IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
            + D   ++ +I  M K  +  +A  LF+ ++ SGC P+   YN+L+    H   K++   
Sbjct: 1155 VPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLV----HGLCKSRRFD 1210

Query: 68   KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY--- 124
            +A    ++M   + C P+I+TYN ++    +++ VD+   LF ++    LAPD  TY   
Sbjct: 1211 QAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIV 1270

Query: 125  ----------------------NG----------VMDAYGKNGMIKEMESVLSRMKSNQC 152
                                  NG          ++D + K G + +   +L  + S   
Sbjct: 1271 ISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGS 1330

Query: 153  KPDIITFNLLIDSYGK----RQAFDKME-------------------------------Q 177
             PD++TF++ ID   K    RQA + +E                                
Sbjct: 1331 YPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVD 1390

Query: 178  VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY---------------------VFQK 216
            +F+ +     +P   T+ +++       L  K  Y                     +  K
Sbjct: 1391 LFEVMRQCGCEPDNATYTTLV-----GHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSK 1445

Query: 217  MTAMKYTPSFITYEC-IITMYGYCDNVSRAREIFDELSKLGKDMK-VSTLNAMLEAYCMN 274
            + A     + +   C I+ M+G C +   AR++F+     G D + V   +AML  Y  +
Sbjct: 1446 LEASIEVEADVRLGCAIVDMFGKCGSPQDARKVFE-----GMDQRNVVLWSAMLGVYVFH 1500

Query: 275  GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE-LVQKLLKRMEQNGIVPNKRF 333
                +A  L+      GV PD+ T+  L      A + +  V + +      G+ P    
Sbjct: 1501 KQEEQAFGLWRVMGLEGVEPDAVTFLSLLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDH 1560

Query: 334  F 334
            F
Sbjct: 1561 F 1561



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 79/171 (46%), Gaps = 13/171 (7%)

Query: 9    ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            AD  +   ++ + GK G  + A  +F  M       +  +++A++  ++  + + +A   
Sbjct: 1454 ADVRLGCAIVDMFGKCGSPQDARKVFEGMDQR----NVVLWSAMLGVYVFHKQEEQAFG- 1508

Query: 69   ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI-LAPDIYTYNGV 127
                  ++ G+E  +P+ VT+  LL  C  A  +D     F  +     L P +  ++ V
Sbjct: 1509 ----LWRVMGLEGVEPDAVTFLSLLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCV 1564

Query: 128  MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
            +D  G+ G++ E E ++  M    CKP   T+N L+ +Y     F++  +V
Sbjct: 1565 IDLLGRLGLVNEAEDLMLGMP---CKPSAATWNCLLSAYKICGDFERALRV 1612


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 155/322 (48%), Gaps = 5/322 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           ++S LI    K+G+   AM +FS+MR  G  PD   Y  +I        K+  +  A+ Y
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILC----KSGRVEDAMRY 431

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F++M   ER  P  + YN L+ +       D+   L  E+ +  +  D   +N ++D++ 
Sbjct: 432 FEQMID-ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHC 490

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G + E E +   M     KP+IIT++ LID Y      D+  ++  S++    KP   
Sbjct: 491 KEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCV 550

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N++I  Y K      A  +F++M +   +P  ITY  I+         + A+E++  +
Sbjct: 551 TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           ++ G  +++ST N +L   C N L  EA  +F+N     +  ++ T+ ++  A  K    
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 670

Query: 313 ELVQKLLKRMEQNGIVPNKRFF 334
           +  + L   +  NG+VP+ R +
Sbjct: 671 DEAKDLFAALSANGLVPDVRTY 692



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 150/328 (45%), Gaps = 7/328 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R  + +   Y+ +IA + K      AM + + M  +G  P+   YN+++    H    +
Sbjct: 227 DRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV----HGYCSS 282

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
               +A+G+ +KM   +  +P++VTYN L+    +     +   +F  + +  L P+I T
Sbjct: 283 GQPKEAIGFLKKMHS-DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITT 341

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++  Y   G + EM  +L  M  N   P+   F++LI +Y K+   D+   VF  + 
Sbjct: 342 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMR 401

Query: 184 HSKEKPTLPTFNSMI-INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                P   T+ ++I I     R++    Y F++M   + +P  I Y  +I      D  
Sbjct: 402 QQGLNPDTVTYGTVIGILCKSGRVEDAMRY-FEQMIDERLSPGNIVYNSLIHSLCIFDKW 460

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A+E+  E+   G  +     N++++++C  G   E++ LF+    +GV P+  TY  L
Sbjct: 461 DKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTL 520

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
              Y  A   +   KLL  M   G+ P+
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPD 548



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 134/319 (42%), Gaps = 6/319 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI      G+  L       +   G R D   +  L+      +  + A+   L   
Sbjct: 94  YGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRM 153

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE--SILAPDIYTYNGVMDAY 131
            ++     C PN+ +YNILL+         +   L + + +      PD+ +Y  V++ +
Sbjct: 154 TQLG----CIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGF 209

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G + +       M      P+++T+N +I +  K QA DK  +V  S++ +   P  
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+NS++  Y  +    +A    +KM +    P  +TY  ++         + AR++FD 
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           ++K G   +++T   +L+ Y   G   E   L +     G+ P+   + +L  AY K   
Sbjct: 330 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGK 389

Query: 312 KELVQKLLKRMEQNGIVPN 330
            +    +  +M Q G+ P+
Sbjct: 390 VDQAMLVFSKMRQQGLNPD 408



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 125/259 (48%), Gaps = 11/259 (4%)

Query: 83  KPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           + + + +  LL+  CA  R  D ++ + + + +    P++++YN ++         +E  
Sbjct: 123 RVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEAL 182

Query: 142 SVLSRMKSN--QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
            +L  M  +   C PD++++  +I+ + K    DK    +  ++     P + T+NS+I 
Sbjct: 183 ELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIA 242

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL---G 256
              KA+   KA  V   M      P+  TY  I+  +GYC +  + +E    L K+   G
Sbjct: 243 ALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV--HGYCSS-GQPKEAIGFLKKMHSDG 299

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELV 315
            +  V T N++++  C NG  TEA  +F++    G+ P+ +TY  L + Y TK  + E+ 
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEM- 358

Query: 316 QKLLKRMEQNGIVPNKRFF 334
             LL  M +NGI PN   F
Sbjct: 359 HGLLDLMVRNGIHPNHYVF 377



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 135/311 (43%), Gaps = 13/311 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+  + K G+   A  +F  M   G +P+ + Y  L+  +        AL + 
Sbjct: 303 DVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYA----TKGALVEM 358

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            G    M   G+    PN   ++IL+ A A+   VDQ   +F ++ +  L PD  TY  V
Sbjct: 359 HGLLDLMVRNGIH---PNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV 415

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +    K+G +++      +M   +  P  I +N LI S      +DK +++   ++    
Sbjct: 416 IGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGI 475

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
                 FNS+I ++ K     ++E +F  M  +   P+ ITY  +I  Y     +  A +
Sbjct: 476 CLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATK 535

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL----LY 303
           +   +  +G      T N ++  YC      +A +LF    + GV+PD  TY +    L+
Sbjct: 536 LLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLF 595

Query: 304 KAYTKANMKEL 314
           +    A  KEL
Sbjct: 596 QTRRTAAAKEL 606



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 87/191 (45%), Gaps = 13/191 (6%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI      G+   A  L + M + G +PD   YN LI  +     K   +  AL  F
Sbjct: 517 YSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYC----KISRMEDALVLF 572

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M+      P+I+TYNI+L+   Q R       L+  + ES    ++ TYN ++    K
Sbjct: 573 REMES-SGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCK 631

Query: 134 NGMIKEMESVLSRMKSNQCKPDII----TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           N +  E      RM  N C  D+     TFN++I +  K    D+ + +F +L  +   P
Sbjct: 632 NNLTDEA----LRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVP 687

Query: 190 TLPTFNSMIIN 200
            + T++ M  N
Sbjct: 688 DVRTYSLMAEN 698



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 15/210 (7%)

Query: 144 LSRMKSNQCKPDIITFNLLIDSY---GKRQ-AFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
           ++R  +++  P++ T+ +LI S    G+    F  +  V K           P    +  
Sbjct: 79  MARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 138

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
           +    R     + V ++MT +   P+  +Y   I + G CD  +R++E  + L  +  D 
Sbjct: 139 D---KRTSDAMDIVLRRMTQLGCIPNVFSYN--ILLKGLCDE-NRSQEALELLQMMPDDG 192

Query: 260 KVSTLNAMLEAYCMNGLPTEADL--LFENSHNM---GVTPDSSTYKLLYKAYTKANMKEL 314
                + +     +NG   E DL   +   H M   G+ P+  TY  +  A  KA   + 
Sbjct: 193 GDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDK 252

Query: 315 VQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             ++L  M +NG++PN R +   +  + SS
Sbjct: 253 AMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 147/321 (45%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  L+  +GK G+ + A   F  M   G  P+   YN L+ A      K   L  A
Sbjct: 134 DEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAF----RKVGQLDMA 189

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           LG F +MK     +P++VTYNILL A   A  V     LF ++     +PD YTY+ +++
Sbjct: 190 LGLFAEMK-RRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVN 248

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
             GK+G ++E   V   M       D++ +N L+ +  K    D++ ++ K +      P
Sbjct: 249 GLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHP 308

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              +FN+++   GKA     A  VF +M      P  I+Y  +I  Y    + ++AR++ 
Sbjct: 309 DAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQML 368

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +E+ + G   +  T N+++     +G   EA  + E     G  PD  TY  L     K 
Sbjct: 369 EEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKR 428

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +   +L ++M+  G+ P+
Sbjct: 429 GENQRAARLFQQMKDKGVEPD 449



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 151/317 (47%), Gaps = 7/317 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+R +      Y+ L+  +   G+   A  LF +M   GC PD   Y+ L+        K
Sbjct: 197 KRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGL----GK 252

Query: 63  AKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           +  + +A   F++M  ++R    ++V YN LL   A+A N+D+V  L KE+      PD 
Sbjct: 253 SGRVEEAHKVFREM--VDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDA 310

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           +++N +MDA GK         V +RM  + CKPD+I++N+LIDSY +     +  Q+ + 
Sbjct: 311 FSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEE 370

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++ +   P   T+NS+I          +A  V ++M      P  +TY  ++ M G    
Sbjct: 371 MVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGE 430

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
             RA  +F ++   G +    +    ++    +    EA +LF++   +G   D + Y++
Sbjct: 431 NQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRI 490

Query: 302 LYKAYTKANMKELVQKL 318
           L +A  +A   EL  +L
Sbjct: 491 LIRAAHRAGDTELEAQL 507



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 138/298 (46%), Gaps = 5/298 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R    +   Y+ L+    K GQ  +A+ LF+EM+  G +P    YN L+ A       A
Sbjct: 163 ERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALC----SA 218

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             +  A   F KM G + C P+  TY+ L+    ++  V++ + +F+E+ +  +A D+  
Sbjct: 219 GRVGAARKLFHKMTG-DGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVN 277

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++    K G +  +  ++  M      PD  +FN ++D+ GK    D   +VF  ++
Sbjct: 278 YNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMV 337

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
            S  KP L ++N +I +Y +     +A  + ++M    + P   TY  +I        V 
Sbjct: 338 ESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVD 397

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
            A  + +E+   G    V T N +++     G    A  LF+   + GV PD+ +Y +
Sbjct: 398 EAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAV 455



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 148/321 (46%), Gaps = 5/321 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++KLI ++   G+   A  ++ ++   GC+ D   YN LI        ++  L  A+  F
Sbjct: 68  FTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYF----GRSGQLDSAMEMF 123

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++MK ++  +P+  TY  L+ A  +A  V +  + F  + E  L P+I TYN +MDA+ K
Sbjct: 124 REMK-IKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRK 182

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +     + + MK    +P ++T+N+L+D+           ++F  +      P   T
Sbjct: 183 VGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYT 242

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +++++   GK+    +A  VF++M         + Y  ++       N+ R  ++  E+S
Sbjct: 243 YSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMS 302

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G      + N +++A      P  A  +F      G  PD  +Y +L  +Y +     
Sbjct: 303 RKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAA 362

Query: 314 LVQKLLKRMEQNGIVPNKRFF 334
             +++L+ M + G +P  + +
Sbjct: 363 QARQMLEEMVEAGFIPETKTY 383



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 145/317 (45%), Gaps = 9/317 (2%)

Query: 16  KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD--KAKALAKALGYF 73
           KLI   G+  ++  A  LF++  +  C P    +  LI   +++ +  +A+ + K L   
Sbjct: 35  KLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKL--- 91

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
              KG   C+ +   YN+L+R   ++  +D    +F+E+      PD YTY  +++A GK
Sbjct: 92  -VQKG---CQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGK 147

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++E  S    M      P+I T+NLL+D++ K    D    +F  +     +P++ T
Sbjct: 148 AGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVT 207

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N ++     A   G A  +F KMT    +P   TY  ++   G    V  A ++F E+ 
Sbjct: 208 YNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMV 267

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G  + +   N++L      G       L +     G  PD+ ++  +  A  KAN  +
Sbjct: 268 DRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPD 327

Query: 314 LVQKLLKRMEQNGIVPN 330
             +++  RM ++G  P+
Sbjct: 328 AAREVFARMVESGCKPD 344



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 2/160 (1%)

Query: 172 FDKMEQVFKSLMHSKEKPTLP-TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
            D +E + K  M ++ +P  P T   +I  YG+    G A  +F +  +   +P+   + 
Sbjct: 11  LDPLETLLKE-MVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFT 69

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
            +I +        RA  ++ +L + G  +     N ++  +  +G    A  +F      
Sbjct: 70  KLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIK 129

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           G  PD  TY  L  A  KA   +  +     M + G+ PN
Sbjct: 130 GSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPN 169


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 171/391 (43%), Gaps = 74/391 (18%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L++   K G    AM +F EMR +GC+P+   +NALI  H   R +    A+ 
Sbjct: 392 DVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMH-GNRGR---FAEM 447

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH---------------- 113
           +  F++++ +  C P+IVT+N LL    Q     +V+ +FKE+                 
Sbjct: 448 MKVFEEIE-ICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLIS 506

Query: 114 -------------------ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
                              E+ + PD+ +YN V+ A  + G+ ++ E V + MK  +CKP
Sbjct: 507 AYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKP 566

Query: 155 DIITFNLLIDSYGKRQAFDKM----EQVFKSL---------------------------- 182
           + +T+  L+ +Y   +  ++M    E+++  L                            
Sbjct: 567 NELTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAF 626

Query: 183 --MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
             +  K  P L T N+MI  YG+ ++  KA  +   M    ++PS  TY  ++ M+   +
Sbjct: 627 EELKKKGSPDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSE 686

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           N  R+ E+  E+   G    + + N ++ AYC NG   +A  +F      G+ PD  TY 
Sbjct: 687 NFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYN 746

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
               +Y   ++ E    +++ M ++G   N+
Sbjct: 747 TFVASYAADSLFEDAIGVVRYMIKHGCKRNQ 777



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 149/321 (46%), Gaps = 4/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI      G+ R A+ +F +M   GC+P    YN ++  +          +K 
Sbjct: 216 DVYAYTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITYNVILNVY---GKMGMPWSKI 272

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            G    MK      P+  TYN L+  C +    ++   +F+E+  S  +PD  T+N ++D
Sbjct: 273 SGLVHGMKS-SGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLD 331

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK+   KE   VL  M+ +   P I+T+N LI +Y +     +  ++   ++    KP
Sbjct: 332 VYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKP 391

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ +++  + KA +   A  +F +M A    P+  T+  +I M+G     +   ++F
Sbjct: 392 DVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVF 451

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +E+        + T N +L  +  NG+ +E   +F+     G  P+  T+  L  AY++ 
Sbjct: 452 EEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRC 511

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +    + KRM + G+ P+
Sbjct: 512 GSFQQAMAVYKRMLEAGVTPD 532



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 157/339 (46%), Gaps = 12/339 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT---RDKAK 64
           + +  + + +I ++GK+G+   A  + + +R  G   D   Y +LITA+      RD   
Sbjct: 179 VLNCSVVAVIITMLGKEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRD--- 235

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHESILAPDIYT 123
               A+  F+KM+  E CKP ++TYN++L    +      +++ L   +  S +APD YT
Sbjct: 236 ----AVLVFKKMEE-EGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYT 290

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++    +  + +E   V   MK +   PD +TFN L+D YGK +   +  +V K + 
Sbjct: 291 YNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEME 350

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
            S   P++ T+NS+I  Y +  L  +A  +  +M      P   TY  +++ +       
Sbjct: 351 FSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDE 410

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  IF E+   G    + T NA+++ +   G   E   +FE        PD  T+  L 
Sbjct: 411 PAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLL 470

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
             + +  M   V  + K M++ G VP +  F   +  +S
Sbjct: 471 AVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYS 509



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 152/307 (49%), Gaps = 11/307 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+   +      A  +F EM+ SG  PD   +N L+  +  +R   +A+   
Sbjct: 287 DDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAM--- 343

Query: 70  LGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
               + +K ME     P+IVTYN L+ A A+   + +   L  ++ E  + PD++TY  +
Sbjct: 344 ----EVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTL 399

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  + K GM +    +   M++  CKP+I TFN LI  +G R  F +M +VF+ +     
Sbjct: 400 LSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNC 459

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P + T+N+++  +G+  +  +   VF++M    + P   T+  +I+ Y  C +  +A  
Sbjct: 460 APDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMA 519

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           ++  + + G    +S+ NA+L A    GL  +++ +F    +    P+  TY  L  AY 
Sbjct: 520 VYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAY- 578

Query: 308 KANMKEL 314
            AN KE+
Sbjct: 579 -ANSKEI 584



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 157/336 (46%), Gaps = 14/336 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMW-----LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           Y+ ++ V GK G      W     L   M++SG  PD   YN LI+       +     +
Sbjct: 255 YNVILNVYGKMGMP----WSKISGLVHGMKSSGVAPDDYTYNTLISCC----RRGSLYEE 306

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A   F++MK +    P+ VT+N LL    ++R   +   + KE+  S  +P I TYN ++
Sbjct: 307 AAQVFEEMK-LSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLI 365

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            AY ++G+++E   +  +M     KPD+ T+  L+  + K    +   ++F  +  +  K
Sbjct: 366 SAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCK 425

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P + TFN++I  +G      +   VF+++      P  +T+  ++ ++G     S    +
Sbjct: 426 PNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGV 485

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F E+ + G   +  T N ++ AY   G   +A  +++     GVTPD S+Y  +  A  +
Sbjct: 486 FKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALAR 545

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             + E  +K+   M+     PN+  +   L  +++S
Sbjct: 546 GGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANS 581



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 159/352 (45%), Gaps = 41/352 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI+   + G  R AM L  +M   G +PD   Y  L++      +KA     A+  F
Sbjct: 361 YNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGF----EKAGMDEPAMRIF 416

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+    CKPNI T+N L++         ++  +F+E+     APDI T+N ++  +G+
Sbjct: 417 GEMRA-AGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQ 475

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           NGM  E+  V   MK     P+  TFN LI +Y +  +F +   V+K ++ +   P L +
Sbjct: 476 NGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSS 535

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG---------------- 237
           +N+++    +  L  ++E VF +M   +  P+ +TY  ++  Y                 
Sbjct: 536 YNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMHTLAEEIY 595

Query: 238 -------------------YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
                               CD +      F+EL K G    +STLNAM+  Y    +  
Sbjct: 596 SGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKKGSP-DLSTLNAMIAIYGRRQMVA 654

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +A+ +    +  G +P  +TY  L   ++++   E  +++LK +   G+ P+
Sbjct: 655 KANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPD 706



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 144/308 (46%), Gaps = 10/308 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  ++ +   ++ LI+   + G  + AM ++  M  +G  PD S YNA++ A      +
Sbjct: 490 KRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAA----LAR 545

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
                ++   F +MK   RCKPN +TY  LL A A ++ +++++ L +E++  +  P   
Sbjct: 546 GGLWEQSEKVFAEMKD-GRCKPNELTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVPV 604

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
               ++    K  ++ E E     +K  +  PD+ T N +I  YG+RQ   K  ++   +
Sbjct: 605 LLKTLVLVNSKCDLLMETEHAFEELK-KKGSPDLSTLNAMIAIYGRRQMVAKANEILNFM 663

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN- 241
             S   P+L T+NS++  + ++    ++E V +++ A    P  I+Y  +I  + YC N 
Sbjct: 664 NESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNTVI--FAYCRNG 721

Query: 242 -VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            +  A  IF  +   G    V T N  + +Y  + L  +A  +       G   + +TY 
Sbjct: 722 RMKDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIGVVRYMIKHGCKRNQNTYN 781

Query: 301 LLYKAYTK 308
            +   Y K
Sbjct: 782 SIVDGYCK 789


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 168/370 (45%), Gaps = 50/370 (13%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR  + D   +S ++ V  + G+   A+  F +M+  G  PD  +Y  LI  +    D +
Sbjct: 357 QRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVS 416

Query: 64  KALAKALGYFQKMKG--MER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            AL        KM+   +ER C  ++VTYN LL    + + +D  + LFKE+ E  + PD
Sbjct: 417 GAL--------KMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPD 468

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            YT   ++  Y K+G + +  S+   M     KPD++T+N L+D + K    +K ++++ 
Sbjct: 469 FYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWY 528

Query: 181 SLMHSKE------------------------------------KPTLPTFNSMIINYGKA 204
            ++ S+E                                    KPTL T N++I  Y +A
Sbjct: 529 DMI-SREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRA 587

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
               KA      M +    P  ITY  +I  +   +N  RA  + + + + G    + T 
Sbjct: 588 GNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTY 647

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKRME 323
           NA+L  +  +G   EA+++     + G+ PD STY  L   Y +K NMKE   ++   M 
Sbjct: 648 NAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAF-RVHDEML 706

Query: 324 QNGIVPNKRF 333
           Q G VP+ +F
Sbjct: 707 QRGFVPDDKF 716



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 141/313 (45%), Gaps = 15/313 (4%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           + ++R +       + L+  + K G   LA  ++ +   SG   +    N ++ A     
Sbjct: 179 LLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVNALC--- 235

Query: 61  DKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
            K   L     Y  +M  KG+     ++VTYN L+ A  +   V +   L   +    L 
Sbjct: 236 -KDGKLDNVGVYLSEMEEKGV---YADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLK 291

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN-LLIDSYGKRQAFDKMEQ 177
           P ++TYN +++   K G  +  + VL  M      P+  TFN +L++S  K   ++  E+
Sbjct: 292 PGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEA-ER 350

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           VF  ++     P L +F+S++  + +    G+A   F+KM  +   P  + Y  +I   G
Sbjct: 351 VFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILIN--G 408

Query: 238 YC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           YC  D+VS A ++ +E+ + G  M V T N +L   C   +  +AD LF+     GV PD
Sbjct: 409 YCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPD 468

Query: 296 SSTYKLLYKAYTK 308
             T   L   Y K
Sbjct: 469 FYTLTTLIHGYCK 481



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 120/278 (43%), Gaps = 35/278 (12%)

Query: 86  IVTYNILLRACAQAR-------------------NVDQVNAL----------------FK 110
           +V +++L+R   QAR                   +++  NAL                ++
Sbjct: 154 VVVFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYE 213

Query: 111 ELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170
           +  +S    ++YT N +++A  K+G +  +   LS M+      D++T+N L+++Y +R 
Sbjct: 214 DFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRG 273

Query: 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
              +   +   +     KP L T+N++I    K     +A+ V  +M  +   P+  T+ 
Sbjct: 274 LVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFN 333

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
            ++      ++V  A  +F+E+ + G    + + ++++  +  NG    A   FE    +
Sbjct: 334 PMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGV 393

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           G+ PD+  Y +L   Y + +      K+   M + G V
Sbjct: 394 GLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCV 431



 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 6/182 (3%)

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM---IINYGKARLQGKAEY 212
           ++ F+LLI +Y + +   +  + F+ L       ++   N++   I+  G   L  K   
Sbjct: 154 VVVFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYE 213

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
            F K   +    +       +   G  DNV        E+ + G    + T N ++ AYC
Sbjct: 214 DFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVY---LSEMEEKGVYADLVTYNTLVNAYC 270

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             GL +EA  L +     G+ P   TY  L     K    E  +++L  M   G+ PN  
Sbjct: 271 RRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAA 330

Query: 333 FF 334
            F
Sbjct: 331 TF 332


>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
 gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
          Length = 597

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 156/321 (48%), Gaps = 9/321 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+      GQ   A  + SEM+ +G  P  +VYNA +   L    KA+   KA+  +
Sbjct: 210 YALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLL----KARCSEKAVEVY 265

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           Q+MK  ERC+ N  TY +++    +A        +F+E+      P+I TY  +++A+ +
Sbjct: 266 QRMK-KERCRTNTETYTLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAR 324

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G+ ++ E V   M+    +PD+  +N L+++Y +        ++F  + H   +P   +
Sbjct: 325 EGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRAS 384

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N ++  +G+A L  +AE  FQ++      P+  ++  +++ +    NV+R  E+  +L 
Sbjct: 385 YNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLH 444

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLF----ENSHNMGVTPDSSTYKLLYKAYTKA 309
           K G       LNAML AY   G   + + LF         +   PD+STY ++  AY +A
Sbjct: 445 KSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGAIAGAPDTSTYNVMVNAYGRA 504

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              + ++   + +   G+  +
Sbjct: 505 GYLDRMEAAFRSLAARGLAAD 525



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 130/262 (49%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P+I+ YN+L+ A  Q R + +  A +  L E+   P   TY  ++ AY  +G +   E 
Sbjct: 169 RPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLHRAEG 228

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           V+S M+ N   P    +N  +D   K +  +K  +V++ +   + +    T+  MI  YG
Sbjct: 229 VISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYG 288

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           KA     +  VF++M ++   P+  TY  ++  +       +A E+F+E+ + G +  V 
Sbjct: 289 KANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVY 348

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
             NA++EAY   GLP  A  +F    +MG  PD ++Y +L  A+ +A + +  +   + +
Sbjct: 349 AYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQEL 408

Query: 323 EQNGIVPNKRFFLEALETFSSS 344
           +Q G+ P  +  +  L   + S
Sbjct: 409 KQQGMRPTMKSHMLLLSAHARS 430



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 142/302 (47%), Gaps = 6/302 (1%)

Query: 37  MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 96
           +R S  RPD   YN LI A+   R  ++A A  +   +      RC P   TY +LLRA 
Sbjct: 163 LRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEA-----RCVPTEDTYALLLRAY 217

Query: 97  AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
             +  + +   +  E+  + + P    YN  +D   K    ++   V  RMK  +C+ + 
Sbjct: 218 CGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNT 277

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
            T+ L+I+ YGK        +VF+ +     KP + T+ +++  + +  L  KAE VF++
Sbjct: 278 ETYTLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEE 337

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M    + P    Y  ++  Y        A EIF  +  +G +   ++ N +++A+   GL
Sbjct: 338 MQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGL 397

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
             EA+  F+     G+ P   ++ LL  A+ ++      ++++ ++ ++G+ P+  F L 
Sbjct: 398 HQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDT-FALN 456

Query: 337 AL 338
           A+
Sbjct: 457 AM 458



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 131/264 (49%), Gaps = 16/264 (6%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +Q  +  D   Y+ L+    + G  + A  +FS M + GC PD + YN L+ A      +
Sbjct: 339 QQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAF----GR 394

Query: 63  AKALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           A    +A   FQ++K  GM   +P + ++ +LL A A++ NV +   +  +LH+S L PD
Sbjct: 395 AGLHQEAEAAFQELKQQGM---RPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPD 451

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK----PDIITFNLLIDSYGKRQAFDKME 176
            +  N +++AYG+ G + +ME + + M+         PD  T+N+++++YG+    D+ME
Sbjct: 452 TFALNAMLNAYGRAGRLDDMERLFAAMERGDGAIAGAPDTSTYNVMVNAYGRAGYLDRME 511

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
             F+SL        + T+ S I  Y + +  G+   VF++M      P   T + ++   
Sbjct: 512 AAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGTAKVLLAA- 570

Query: 237 GYCDNVSRAREIFDELSKLGKDMK 260
             C +  +  ++   +  + KD K
Sbjct: 571 --CSDERQVEQVKAIVRSMHKDAK 592


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 158/322 (49%), Gaps = 11/322 (3%)

Query: 12  GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           G++  L  V+   G    A   F +M      P     N L    LH   K+     AL 
Sbjct: 182 GVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNEL----LHRLSKSSKGGLALS 237

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           +F+ M  +    P++ TYN+++   A+  +++   +LF+E+    L PDI TYN ++D Y
Sbjct: 238 FFKDMV-VAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGY 296

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK--- 188
           GK GM+    SV   MK   C+PD+IT+N LI+ + K   F+++ Q F+ L   K++   
Sbjct: 297 GKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCK---FERIPQAFEYLHGMKQRGLQ 353

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P + T++++I  + KA +  +A   F  M  +   P+  TY  +I       +++ A ++
Sbjct: 354 PNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKL 413

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             E+ + G ++ + T  A+L+  C +G   EA+ LF      G T +   Y  L+  Y K
Sbjct: 414 ESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIK 473

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
           A M E    +L+ M +  + P+
Sbjct: 474 AKMMEKAMDILEEMNKKNLKPD 495



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 147/323 (45%), Gaps = 9/323 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI   GK G    A+ +F EM+++GC PD   YN+LI        K + + +A
Sbjct: 285 DIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFC----KFERIPQA 340

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
             Y   MK     +PN+VTY+ L+ A  +A  + + N  F ++    L P+ +TY  ++D
Sbjct: 341 FEYLHGMK-QRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLID 399

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A  K G + E   + S M+      +I+T+  L+D   +     + E++F +L+ +    
Sbjct: 400 ANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTL 459

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRARE 247
               + S+   Y KA++  KA  + ++M      P  + Y   I  +G C  + +  +  
Sbjct: 460 NQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKI--WGLCRQNEIEDSMA 517

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +  E+   G          +++AY   G  TEA  L +   ++G+     TY +L     
Sbjct: 518 VIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLC 577

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           K  + +   +    M +NG+ PN
Sbjct: 578 KIGLVQQAVRYFDHMTRNGLQPN 600



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 126/313 (40%), Gaps = 13/313 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQR    +   YS LI    K G    A   F +M   G +P+   Y +LI A+    D 
Sbjct: 348 KQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDL 407

Query: 63  AKALAKALGYFQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +A       F+    M++     NIVTY  LL    +   + +   LF  L ++    +
Sbjct: 408 NEA-------FKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLN 460

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
              Y  +   Y K  M+++   +L  M     KPD++ +   I    ++   +    V +
Sbjct: 461 QQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIR 520

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +M          + ++I  Y K     +A  + Q+M  +    + +TY  +I       
Sbjct: 521 EMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIG 580

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            V +A   FD +++ G    +    A+++  C N    EA  LF    + G++PD    K
Sbjct: 581 LVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPD----K 636

Query: 301 LLYKAYTKANMKE 313
           L+Y +    NMK 
Sbjct: 637 LVYTSLIDGNMKH 649



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 138/316 (43%), Gaps = 7/316 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + + G+ R A  LF  +  +G   +  +Y +L     H   KAK + KA+   
Sbjct: 429 YTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSL----FHGYIKAKMMEKAMDIL 484

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M   +  KP+++ Y   +    +   ++   A+ +E+ +  L  + Y Y  ++DAY K
Sbjct: 485 EEMNK-KNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFK 543

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G   E  ++L  M+    K  ++T+ +LID   K     +  + F  +  +  +P +  
Sbjct: 544 VGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMI 603

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + ++I    K     +A+ +F +M     +P  + Y  +I       N   A  + + + 
Sbjct: 604 YTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMV 663

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS-TYKLLYKAYTKANMK 312
           ++G ++ +    +++  +   G    A  L +     G+ PD      LL K Y   ++ 
Sbjct: 664 EIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDIN 723

Query: 313 ELVQKLLKRMEQNGIV 328
           E +  L   M + G++
Sbjct: 724 EAL-ALHDDMARRGLI 738



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 95/220 (43%), Gaps = 6/220 (2%)

Query: 115 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
           ++  P    ++ + +     GM++E      +M   +  P + + N L+    K      
Sbjct: 175 NVCRPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGL 234

Query: 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
               FK ++ +   P++ T+N +I    +      A  +F++M A    P  +TY  +I 
Sbjct: 235 ALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLID 294

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM---G 291
            YG    ++ A  +F+E+   G +  V T N+++  +C      +A   FE  H M   G
Sbjct: 295 GYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQA---FEYLHGMKQRG 351

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           + P+  TY  L  A+ KA M     K    M + G+ PN+
Sbjct: 352 LQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNE 391


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 152/317 (47%), Gaps = 5/317 (1%)

Query: 14   YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
            Y+ LI  + +   T  A  LF +M+N GC PD   +N L+  H     K+  + +    +
Sbjct: 791  YNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVH----GKSGKITELFELY 846

Query: 74   QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++M    RCKP+ +TYNI++ + A++ N+D+    F +L  S   P   TY  ++D   K
Sbjct: 847  KEMIS-RRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAK 905

Query: 134  NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
             G ++E   +   M    CKP+   FN+LI+ YGK    +   Q+FK +++   +P L +
Sbjct: 906  VGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKS 965

Query: 194  FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            +  ++     A    +A Y F ++ +    P FI Y  II   G    +  A  +++E+ 
Sbjct: 966  YTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMR 1025

Query: 254  KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
              G    + T N+++    + G+  +A  ++E     G+ PD  TY  L + Y+ +   E
Sbjct: 1026 NRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPE 1085

Query: 314  LVQKLLKRMEQNGIVPN 330
                + K M  +G  PN
Sbjct: 1086 HAYTVYKNMMVDGCNPN 1102



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 147/317 (46%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L+  +GKK  + + M L  EM + G RP+  VY   I   +  R  A  + +A   F
Sbjct: 230 YSALMVALGKKRDSEMVMVLLKEMEDLGLRPN--VYTFTICIRVLGR--AGKIDEAYEIF 285

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M   E C P++VTY +L+ A   A  ++    LF ++  +   PD   Y  ++D +  
Sbjct: 286 RRMDD-EGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFND 344

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +   +   S+M+++   PD++TF +L+D   K + FD+    F  +      P L T
Sbjct: 345 FGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHT 404

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N++I    +A     A  +   M ++   P+  TY   I  +G      +A E F+++ 
Sbjct: 405 YNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMK 464

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    +   NA L +    G   EA  +F      G+ PDS TY ++ K Y+K    +
Sbjct: 465 AKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVD 524

Query: 314 LVQKLLKRMEQNGIVPN 330
               LL  M +NG  P+
Sbjct: 525 EAVNLLSEMIRNGCEPD 541



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 127/255 (49%), Gaps = 5/255 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  + + G+   A+ L   M + G +P    YN  I        K+    KA+  F
Sbjct: 405 YNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYF----GKSGETGKAVETF 460

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KMK  +   PNIV  N  L + A+   + +   +F  L E+ LAPD  TYN +M  Y K
Sbjct: 461 EKMKA-KGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSK 519

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + E  ++LS M  N C+PD+I  N LIDS  K    D+  Q+F  +   K  PT+ T
Sbjct: 520 VGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVT 579

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N+++   GK     KA  +F+ M   K +P+ I++  ++  +   D V  A ++F +++
Sbjct: 580 YNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMT 639

Query: 254 KLGKDMKVSTLNAML 268
            +     V T N ++
Sbjct: 640 VMDCKPDVLTYNTVI 654



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 130/300 (43%), Gaps = 7/300 (2%)

Query: 33   LFSE--MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90
            +F+E  + N  CR D  +   +     H R+       A   F K        P + +YN
Sbjct: 738  IFAEELVLNGICREDSFLIPLVRVLCKHKRE-----LYAYQIFDKFTKKLGISPTLASYN 792

Query: 91   ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
             L+    +    ++   LFK++     APD +T+N ++  +GK+G I E+  +   M S 
Sbjct: 793  CLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISR 852

Query: 151  QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
            +CKPD IT+N++I S  K    DK    F  L+ S  +PT  T+  +I    K     +A
Sbjct: 853  RCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEA 912

Query: 211  EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
              +F++M+     P+   +  +I  YG   +   A ++F  +   G    + +   +++ 
Sbjct: 913  MRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDC 972

Query: 271  YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             C+ G   EA   F    + G+ PD   Y  +     K+   E    L   M   GIVP+
Sbjct: 973  LCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPD 1032



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 137/293 (46%), Gaps = 5/293 (1%)

Query: 10   DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
            D   ++ L+AV GK G+      L+ EM +  C+PD   YN +I+    +  K+  L KA
Sbjct: 822  DAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVIS----SLAKSNNLDKA 877

Query: 70   LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            L +F  +   +  +P   TY  L+   A+   +++   LF+E+ +    P+   +N +++
Sbjct: 878  LDFFYDLVSSDF-RPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILIN 936

Query: 130  AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
             YGK G  +    +  RM +   +PD+ ++ +L+D        D+    F  L  +   P
Sbjct: 937  GYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDP 996

Query: 190  TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
                +N +I   GK++   +A  ++ +M      P   TY  ++   G    V +A+ ++
Sbjct: 997  DFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMY 1056

Query: 250  DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +EL   G +  V T NA++  Y ++  P  A  +++N    G  P+  TY  L
Sbjct: 1057 EELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 143/321 (44%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  +   +  +G  R    + ++MR +G   +   YN LI    H   ++    +A
Sbjct: 156 DLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLI----HLLIQSGFCGEA 211

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  +++M   E  KP++ TY+ L+ A  + R+ + V  L KE+ +  L P++YT+   + 
Sbjct: 212 LEVYRRMVS-EGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIR 270

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
             G+ G I E   +  RM    C PD++T+ +LID+       +  +++F  +  +  KP
Sbjct: 271 VLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKP 330

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               + +++  +         +  + +M A  Y P  +T+  ++ +     +   A   F
Sbjct: 331 DQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATF 390

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D + K G    + T N ++      G   +A  L     ++GV P + TY +    + K+
Sbjct: 391 DVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKS 450

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
                  +  ++M+  GIVPN
Sbjct: 451 GETGKAVETFEKMKAKGIVPN 471



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 149/337 (44%), Gaps = 15/337 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT-----AHLHTRDKAK 64
           D   Y+ LI  +   GQ   A  LF +M+ +G +PD  +Y  L+        L T  +  
Sbjct: 296 DLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFW 355

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           +  +A GY           P++VT+ IL+    +AR+ D+  A F  + +  + P+++TY
Sbjct: 356 SQMEADGYM----------PDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTY 405

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++    + G I++   +L  M+S   +P   T+N+ ID +GK     K  + F+ +  
Sbjct: 406 NTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKA 465

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P +   N+ + +  +     +A+ +F  +      P  +TY  ++  Y     V  
Sbjct: 466 KGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDE 525

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  +  E+ + G +  V  +N+++++    G   EA  +F+   +M ++P   TY  L  
Sbjct: 526 AVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLS 585

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
              K    +   +L + M +    PN   F   L+ F
Sbjct: 586 GLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCF 622



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 135/304 (44%), Gaps = 5/304 (1%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y+ D   ++ L+ V+ K      A   F  MR  G  P+   YN LI   L       AL
Sbjct: 363 YMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDAL 422

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            K LG  + +      +P   TYNI +    ++    +    F+++    + P+I   N 
Sbjct: 423 -KLLGTMESVG----VQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNA 477

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
            + +  + G ++E +++ + ++ N   PD +T+N+++  Y K    D+   +   ++ + 
Sbjct: 478 SLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNG 537

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P +   NS+I +  KA    +A  +F +M  MK +P+ +TY  +++  G    V +A 
Sbjct: 538 CEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAI 597

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+F+ + +        + N +L+ +C N     A  +F     M   PD  TY  +    
Sbjct: 598 ELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGL 657

Query: 307 TKAN 310
            K N
Sbjct: 658 IKEN 661



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/366 (21%), Positives = 153/366 (41%), Gaps = 49/366 (13%)

Query: 12  GIYSKLIAV------MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA 65
           GI   ++A       + + G+ R A  +F+ +R +G  PD   YN ++  +     K   
Sbjct: 467 GIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCY----SKVGQ 522

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           + +A+    +M     C+P+++  N L+ +  +A  VD+   +F  + +  L+P + TYN
Sbjct: 523 VDEAVNLLSEMI-RNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYN 581

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++   GK G +++   +   M   +C P+ I+FN L+D + K    +   ++F  +   
Sbjct: 582 TLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVM 641

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC----DN 241
             KP + T+N++I    K      A + F ++    + P  +T   ++     C    D 
Sbjct: 642 DCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKSMH-PDHVTICTLLPGLVKCGQIGDA 700

Query: 242 VSRAREIFDEL-----SKLGKDMKVSTL------NAML--EAYCMNGLPTEADLLF---- 284
           +S AR+   ++         +D+   TL       A++  E   +NG+  E   L     
Sbjct: 701 ISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVR 760

Query: 285 ----------------ENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
                           + +  +G++P  ++Y  L     + +  E    L K M+  G  
Sbjct: 761 VLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCA 820

Query: 329 PNKRFF 334
           P+   F
Sbjct: 821 PDAFTF 826



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 120/288 (41%), Gaps = 13/288 (4%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +AL YF  +           T N +L        V+ + A+F+ + + I+  D+ TY  +
Sbjct: 104 RALSYFYSISEFPTVLHTTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTI 163

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
             A    G +++M +VL++M+      +  ++N LI    +     +  +V++ ++    
Sbjct: 164 FKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGL 223

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           KP+L T++++++  GK R       + ++M  +   P+  T+   I + G    +  A E
Sbjct: 224 KPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYE 283

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           IF  +   G    + T   +++A C  G    A  LF      G  PD   Y  L   + 
Sbjct: 284 IFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFN 343

Query: 308 KANMKELVQKLLKRMEQNGIVPN-------------KRFFLEALETFS 342
                +  ++   +ME +G +P+              R F EA  TF 
Sbjct: 344 DFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFD 391



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 144/357 (40%), Gaps = 49/357 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L+    K  +  LA+ +FS+M    C+PD   YN +I   +    K   +  A  +F
Sbjct: 615 FNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLI----KENKVNHAFWFF 670

Query: 74  QKMKGMERCKPNIVTYNILLRA---CAQ-------ARNV-----DQVNALF--------- 109
            ++K  +   P+ VT   LL     C Q       AR+       +VN  F         
Sbjct: 671 HQLK--KSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTL 728

Query: 110 --KELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN--------------QCK 153
              E+ ++I+  +    NG+     ++  +  +  VL + K                   
Sbjct: 729 VEAEMDKAIIFAEELVLNGICR---EDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGIS 785

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P + ++N LI    +    +K   +FK + +    P   TFN ++  +GK+    +   +
Sbjct: 786 PTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFEL 845

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           +++M + +  P  ITY  +I+     +N+ +A + F +L          T   +++    
Sbjct: 846 YKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAK 905

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            G   EA  LFE   + G  P+ + + +L   Y K    E   +L KRM   GI P+
Sbjct: 906 VGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPD 962



 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 3    KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
            + R  + D   Y+ L+  +G  G    A  ++ E++ +G  PD   YNALI  +  + + 
Sbjct: 1025 RNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENP 1084

Query: 63   AKALAKALGYFQKMKGMERCKPNIVTY 89
              A       ++ M  ++ C PNI TY
Sbjct: 1085 EHAYT----VYKNMM-VDGCNPNIGTY 1106


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 163/324 (50%), Gaps = 11/324 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + K G+T  A  LF +M  +GC+P+   YN LI +      K K + +AL  F
Sbjct: 203 YTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLC----KDKLVNEALDIF 258

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             MK  +R  P+I TYN L++     R   + +AL  E+    + P+I+T+N ++DA  K
Sbjct: 259 SYMKA-KRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICK 317

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + E + V   M     +PD++T++ L+  Y  R    +  ++F +++    KP   +
Sbjct: 318 EGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFS 377

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDE 251
           +N +I  Y KA+   +A+ +F +M     TP  + Y  +I  +G C    +  A+++F  
Sbjct: 378 YNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLI--HGLCQLGRLREAQDLFKN 435

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-AN 310
           +   G    + T + +L+ +C  G   +A  LF    +  + PD + Y +L  A  K  N
Sbjct: 436 MHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGN 495

Query: 311 MKELVQKLLKRMEQNGIVPNKRFF 334
           +K+  +KL   +   G++PN + +
Sbjct: 496 LKD-ARKLFSELFVQGLLPNVQIY 518



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 149/321 (46%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ LI  + K G+   A+  F +   SGC+P    Y  +I        K      A
Sbjct: 164 DAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLC----KIGETTAA 219

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            G F+KM+    C+PN+VTYNIL+ +  + + V++   +F  +    ++PDI+TYN ++ 
Sbjct: 220 AGLFKKMEE-AGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQ 278

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
                   KE  ++L+ M S    P+I TFN+L+D+  K     + + VFK++     +P
Sbjct: 279 GLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEP 338

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T++S++  Y       +A  +F  M      P   +Y  +I  Y     +  A+++F
Sbjct: 339 DVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLF 398

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +E+   G        N ++   C  G   EA  LF+N H+ G  PD  TY +L   + K 
Sbjct: 399 NEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKE 458

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
                  +L + M+   + P+
Sbjct: 459 GYLGKAFRLFRVMQSTYLKPD 479



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 143/323 (44%), Gaps = 9/323 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D    S LI       +  LA  +FS+M   G +PD   +N LI        K    A+A
Sbjct: 129 DIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLC----KVGKFAQA 184

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           + +F   +    C+P + TY  ++    +         LFK++ E+   P++ TYN ++D
Sbjct: 185 VEFFDDFEA-SGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILID 243

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           +  K+ ++ E   + S MK+ +  PDI T+N LI      + + +   +   +      P
Sbjct: 244 SLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMP 303

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRARE 247
            + TFN ++    K     +A+ VF+ MT M   P  +TY  +  MYGY     +  AR+
Sbjct: 304 NIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSL--MYGYSLRMEIVEARK 361

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +FD +   G      + N +++ YC      EA  LF    + G+TPD+  Y  L     
Sbjct: 362 LFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLC 421

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           +       Q L K M  NG +P+
Sbjct: 422 QLGRLREAQDLFKNMHSNGNLPD 444



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 137/319 (42%), Gaps = 5/319 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI  +    + + A  L +EM +    P+   +N L+ A      K   +++A
Sbjct: 269 DIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAIC----KEGKVSEA 324

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            G F+ M  M   +P++VTY+ L+   +    + +   LF  +      PD ++YN ++ 
Sbjct: 325 QGVFKTMTEM-GVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIK 383

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y K   I E + + + M      PD + +N LI    +     + + +FK++  +   P
Sbjct: 384 GYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLP 443

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            L T++ ++  + K    GKA  +F+ M +    P    Y  +I       N+  AR++F
Sbjct: 444 DLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLF 503

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            EL   G    V     ++   C  GL  EA   F N    G  PD  +Y ++ + + + 
Sbjct: 504 SELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQY 563

Query: 310 NMKELVQKLLKRMEQNGIV 328
             +    +L+  M   G V
Sbjct: 564 KDESRAAQLIGEMRDRGFV 582



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 133/315 (42%), Gaps = 46/315 (14%)

Query: 58  HTRDKAKA---LAKALGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELH 113
           H  D A +   +  AL  F  M   E   P I+ +  LL A  +  +    V +L K++ 
Sbjct: 64  HKHDDASSFRNIDDALASFNHMLHREPL-PCIIQFTKLLSAIVKMGQYYGAVISLSKQME 122

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK----- 168
            + L+PDIYT + ++D +     +    SV S+M     +PD +TFN LI+   K     
Sbjct: 123 LAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFA 182

Query: 169 --RQAFDKMEQ----------------------------VFKSLMHSKEKPTLPTFNSMI 198
              + FD  E                             +FK +  +  +P + T+N +I
Sbjct: 183 QAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILI 242

Query: 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE---IFDELSKL 255
            +  K +L  +A  +F  M A + +P   TY  +I   G C N  R +E   + +E++ L
Sbjct: 243 DSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQ--GLC-NFRRWKEASALLNEMTSL 299

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
                + T N +++A C  G  +EA  +F+    MGV PD  TY  L   Y+        
Sbjct: 300 NIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEA 359

Query: 316 QKLLKRMEQNGIVPN 330
           +KL   M   G  P+
Sbjct: 360 RKLFDAMITKGCKPD 374



 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 5/124 (4%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   YS L+    K+G    A  LF  M+++  +PD ++YN LI A      K   L 
Sbjct: 442 LPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMC----KFGNLK 497

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            A   F ++  ++   PN+  Y  ++    +   +D+    F+ +      PD ++YN +
Sbjct: 498 DARKLFSELF-VQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVI 556

Query: 128 MDAY 131
           +  +
Sbjct: 557 IRGF 560


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 152/317 (47%), Gaps = 5/317 (1%)

Query: 14   YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
            Y+ LI  + +   T  A  LF +M+N GC PD   +N L+  H     K+  + +    +
Sbjct: 791  YNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVH----GKSGKITELFELY 846

Query: 74   QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++M    RCKP+ +TYNI++ + A++ N+D+    F +L  S   P   TY  ++D   K
Sbjct: 847  KEMIS-RRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAK 905

Query: 134  NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
             G ++E   +   M    CKP+   FN+LI+ YGK    +   Q+FK +++   +P L +
Sbjct: 906  VGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKS 965

Query: 194  FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            +  ++     A    +A Y F ++ +    P FI Y  II   G    +  A  +++E+ 
Sbjct: 966  YTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMR 1025

Query: 254  KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
              G    + T N+++    + G+  +A  ++E     G+ PD  TY  L + Y+ +   E
Sbjct: 1026 NRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPE 1085

Query: 314  LVQKLLKRMEQNGIVPN 330
                + K M  +G  PN
Sbjct: 1086 HAYTVYKNMMVDGCNPN 1102



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 147/317 (46%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L+  +GKK  + + M L  EM + G RP+  VY   I   +  R  A  + +A   F
Sbjct: 230 YSALMVALGKKRDSEMVMVLLKEMEDLGLRPN--VYTFTICIRVLGR--AGKIDEAYEIF 285

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M   E C P++VTY +L+ A   A  ++    LF ++  +   PD   Y  ++D +  
Sbjct: 286 RRMDD-EGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFND 344

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +   +   S+M+++   PD++TF +L+D   K + FD+    F  +      P L T
Sbjct: 345 FGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHT 404

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N++I    +A     A  +   M ++   P+  TY   I  +G      +A E F+++ 
Sbjct: 405 YNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMK 464

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    +   NA L +    G   EA  +F      G+ PDS TY ++ K Y+K    +
Sbjct: 465 AKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVD 524

Query: 314 LVQKLLKRMEQNGIVPN 330
               LL  M +NG  P+
Sbjct: 525 EAVNLLSEMIRNGCEPD 541



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 126/255 (49%), Gaps = 5/255 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  + + G+   A+ L   M + G +P    Y   I        K+    KA+  F
Sbjct: 405 YNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYF----GKSGETGKAVETF 460

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KMK  +   PNIV  N  L + A+   + +   +F  L E+ LAPD  TYN +M  Y K
Sbjct: 461 EKMKA-KGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSK 519

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + E  ++LS M  N C+PD+I  N LIDS  K    D+  Q+F  +   K  PT+ T
Sbjct: 520 VGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVT 579

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N+++   GK     KA  +F+ M   K +P+ I++  ++  +   D V  A ++F +++
Sbjct: 580 YNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMT 639

Query: 254 KLGKDMKVSTLNAML 268
            +     V T N ++
Sbjct: 640 VMDCKPDVLTYNTVI 654



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 130/300 (43%), Gaps = 7/300 (2%)

Query: 33   LFSE--MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90
            +F+E  + N  CR D  +   +     H R+       A   F K        P + +YN
Sbjct: 738  IFAEELVLNGICREDSFLIPLVRVLCKHKRE-----LYAYQIFDKFTKKLGISPTLASYN 792

Query: 91   ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
             L+    +    ++   LFK++     APD +T+N ++  +GK+G I E+  +   M S 
Sbjct: 793  CLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISR 852

Query: 151  QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
            +CKPD IT+N++I S  K    DK    F  L+ S  +PT  T+  +I    K     +A
Sbjct: 853  RCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEA 912

Query: 211  EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
              +F++M+     P+   +  +I  YG   +   A ++F  +   G    + +   +++ 
Sbjct: 913  MRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDC 972

Query: 271  YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             C+ G   EA   F    + G+ PD   Y  +     K+   E    L   M   GIVP+
Sbjct: 973  LCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPD 1032



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 137/293 (46%), Gaps = 5/293 (1%)

Query: 10   DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
            D   ++ L+AV GK G+      L+ EM +  C+PD   YN +I+    +  K+  L KA
Sbjct: 822  DAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVIS----SLAKSNNLDKA 877

Query: 70   LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            L +F  +   +  +P   TY  L+   A+   +++   LF+E+ +    P+   +N +++
Sbjct: 878  LDFFYDLVSSDF-RPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILIN 936

Query: 130  AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
             YGK G  +    +  RM +   +PD+ ++ +L+D        D+    F  L  +   P
Sbjct: 937  GYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDP 996

Query: 190  TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
                +N +I   GK++   +A  ++ +M      P   TY  ++   G    V +A+ ++
Sbjct: 997  DFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMY 1056

Query: 250  DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +EL   G +  V T NA++  Y ++  P  A  +++N    G  P+  TY  L
Sbjct: 1057 EELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 143/321 (44%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  +   +  +G  R    + ++MR +G   +   YN LI    H   ++    +A
Sbjct: 156 DLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLI----HLLIQSGFCGEA 211

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  +++M   E  KP++ TY+ L+ A  + R+ + V  L KE+ +  L P++YT+   + 
Sbjct: 212 LEVYRRMVS-EGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIR 270

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
             G+ G I E   +  RM    C PD++T+ +LID+       +  +++F  +  +  KP
Sbjct: 271 VLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKP 330

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               + +++  +         +  + +M A  Y P  +T+  ++ +     +   A   F
Sbjct: 331 DQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATF 390

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D + K G    + T N ++      G   +A  L +   ++GV P + TY      + K+
Sbjct: 391 DVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKS 450

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
                  +  ++M+  GIVPN
Sbjct: 451 GETGKAVETFEKMKAKGIVPN 471



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 146/337 (43%), Gaps = 15/337 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT-----AHLHTRDKAK 64
           D   Y+ LI  +   GQ   A  LF +M+ +G +PD  +Y  L+        L T  +  
Sbjct: 296 DLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFW 355

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           +  +A GY           P++VT+ IL+    +AR+ D+  A F  + +  + P+++TY
Sbjct: 356 SQMEADGYM----------PDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTY 405

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++    + G I++   +L  M+S   +P   T+   ID +GK     K  + F+ +  
Sbjct: 406 NTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKA 465

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P +   N+ + +  +     +A+ +F  +      P  +TY  ++  Y     V  
Sbjct: 466 KGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDE 525

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  +  E+ + G +  V  +N+++++    G   EA  +F+   +M ++P   TY  L  
Sbjct: 526 AVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLS 585

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
              K    +   +L + M      PN   F   L+ F
Sbjct: 586 GLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCF 622



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 133/304 (43%), Gaps = 5/304 (1%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y+ D   ++ L+ V+ K      A   F  MR  G  P+   YN LI   L    +A  +
Sbjct: 363 YMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLL----RAGRI 418

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             AL     M+ +   +P   TY   +    ++    +    F+++    + P+I   N 
Sbjct: 419 EDALKLLDTMESVG-VQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNA 477

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
            + +  + G ++E +++ + ++ N   PD +T+N+++  Y K    D+   +   ++ + 
Sbjct: 478 SLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNG 537

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P +   NS+I +  KA    +A  +F +M  MK +P+ +TY  +++  G    V +A 
Sbjct: 538 CEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAI 597

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+F+ +          + N +L+ +C N     A  +F     M   PD  TY  +    
Sbjct: 598 ELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGL 657

Query: 307 TKAN 310
            K N
Sbjct: 658 IKEN 661



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/366 (21%), Positives = 153/366 (41%), Gaps = 49/366 (13%)

Query: 12  GIYSKLIAV------MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA 65
           GI   ++A       + + G+ R A  +F+ +R +G  PD   YN ++  +     K   
Sbjct: 467 GIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCY----SKVGQ 522

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           + +A+    +M     C+P+++  N L+ +  +A  VD+   +F  + +  L+P + TYN
Sbjct: 523 VDEAVNLLSEMI-RNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYN 581

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++   GK G +++   +   M   +C P+ I+FN L+D + K    +   ++F  +   
Sbjct: 582 TLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVM 641

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC----DN 241
             KP + T+N++I    K      A + F ++    + P  +T   ++     C    D 
Sbjct: 642 DCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKSMH-PDHVTICTLLPGLVKCGQIGDA 700

Query: 242 VSRAREIFDEL-----SKLGKDMKVSTL------NAML--EAYCMNGLPTEADLLF---- 284
           +S AR+   ++         +D+   TL       A++  E   +NG+  E   L     
Sbjct: 701 ISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVR 760

Query: 285 ----------------ENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
                           + +  +G++P  ++Y  L     + +  E    L K M+  G  
Sbjct: 761 VLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCA 820

Query: 329 PNKRFF 334
           P+   F
Sbjct: 821 PDAFTF 826



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 120/288 (41%), Gaps = 13/288 (4%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +AL YF  +           T N +L        V+ + A+F+ + + I+  D+ TY  +
Sbjct: 104 RALSYFYSISEFPTVLHTTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTI 163

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
             A    G +++M +VL++M+      +  ++N LI    +     +  +V++ ++    
Sbjct: 164 FKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGL 223

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           KP+L T++++++  GK R       + ++M  +   P+  T+   I + G    +  A E
Sbjct: 224 KPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYE 283

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           IF  +   G    + T   +++A C  G    A  LF      G  PD   Y  L   + 
Sbjct: 284 IFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFN 343

Query: 308 KANMKELVQKLLKRMEQNGIVPN-------------KRFFLEALETFS 342
                +  ++   +ME +G +P+              R F EA  TF 
Sbjct: 344 DFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFD 391



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 110/260 (42%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           N  +YN L+    Q+    +   +++ +    L P + TY+ +M A GK    + +  +L
Sbjct: 191 NAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLL 250

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             M+    +P++ TF + I   G+    D+  ++F+ +      P L T+  +I     A
Sbjct: 251 KEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNA 310

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
                A+ +F KM A  + P  + Y  ++  +    ++   +E + ++   G    V T 
Sbjct: 311 GQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTF 370

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
             +++  C      EA   F+     G+ P+  TY  L     +A   E   KLL  ME 
Sbjct: 371 TILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMES 430

Query: 325 NGIVPNKRFFLEALETFSSS 344
            G+ P    ++  ++ F  S
Sbjct: 431 VGVQPTAYTYITFIDYFGKS 450



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 144/357 (40%), Gaps = 49/357 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L+    K  +  LA+ +FS+M    C+PD   YN +I   +    K   +  A  +F
Sbjct: 615 FNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLI----KENKVNHAFWFF 670

Query: 74  QKMKGMERCKPNIVTYNILLRA---CAQ-------ARNV-----DQVNALF--------- 109
            ++K  +   P+ VT   LL     C Q       AR+       +VN  F         
Sbjct: 671 HQLK--KSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTL 728

Query: 110 --KELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN--------------QCK 153
              E+ ++I+  +    NG+     ++  +  +  VL + K                   
Sbjct: 729 VEAEMDKAIIFAEELVLNGICR---EDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGIS 785

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P + ++N LI    +    +K   +FK + +    P   TFN ++  +GK+    +   +
Sbjct: 786 PTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFEL 845

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           +++M + +  P  ITY  +I+     +N+ +A + F +L          T   +++    
Sbjct: 846 YKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAK 905

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            G   EA  LFE   + G  P+ + + +L   Y K    E   +L KRM   GI P+
Sbjct: 906 VGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPD 962



 Score = 38.1 bits (87), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 3    KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
            + R  + D   Y+ L+  +G  G    A  ++ E++ +G  PD   YNALI  +  + + 
Sbjct: 1025 RNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENP 1084

Query: 63   AKALAKALGYFQKMKGMERCKPNIVTY 89
              A       ++ M  ++ C PNI TY
Sbjct: 1085 EHAYT----VYKNMM-VDGCNPNIGTY 1106


>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 793

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 150/305 (49%), Gaps = 7/305 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+   +    + A  +F EMR +G  PD   +N+L+  +     KA+   +A
Sbjct: 248 DRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVY----GKARMHDEA 303

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +G  ++M+ +  C P++VTYN L+ +  +   + +   L +E+    + PD+ TY  ++ 
Sbjct: 304 IGVLKEME-LGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLIS 362

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              + G I         M  N CKP++ T+N LI  +G R  F +M  VF  L  +   P
Sbjct: 363 GLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVP 422

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+N+++  +G+  L  +   VF++M    Y P   TY  +I+ Y  C    ++ EI+
Sbjct: 423 DVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIY 482

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             + + G    +ST NA+L A    G   +A+ LF    N+   PD  +Y  L  AY  A
Sbjct: 483 KRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHAY--A 540

Query: 310 NMKEL 314
           N K+L
Sbjct: 541 NAKKL 545



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 145/300 (48%), Gaps = 6/300 (2%)

Query: 44  PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNV 102
           PD S Y AL++A      +A     A+  F++M      +P IVTYN++L   ++ A   
Sbjct: 176 PDASAYTALVSAF----SRASRFRDAVAVFRRMVA-NGIQPAIVTYNVVLHVYSKIAVPW 230

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
             V AL   +    +  D YTYN ++    +  + KE   V   M++   +PD +TFN L
Sbjct: 231 KDVVALVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSL 290

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           +D YGK +  D+   V K +      P++ T+NS+I +Y K  L  +A  + ++M     
Sbjct: 291 LDVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGI 350

Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
            P  ITY  +I+       +  A   +DE+ + G    + T NA+++ + + G   E   
Sbjct: 351 QPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMA 410

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           +F++  + G  PD  T+  L   + +  +   V  + K M+++G VP +  ++  + ++S
Sbjct: 411 VFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYS 470



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 160/402 (39%), Gaps = 75/402 (18%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+ + + G+   A+  + EM  +GC+P+   YNALI  H   R K     + 
Sbjct: 353 DVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLH-GVRGK---FPEM 408

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH---------------- 113
           +  F  ++      P++VT+N LL    Q     +V+ +FKE+                 
Sbjct: 409 MAVFDDLRSAGFV-PDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLIS 467

Query: 114 -------------------ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
                              E+ + PDI TYN V+ A  + G  ++ E + + M++  C+P
Sbjct: 468 SYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRP 527

Query: 155 DIITFNLLIDSYGKRQAFDKM-----------------------------------EQVF 179
           D ++++ L+ +Y   +  DKM                                   E+ F
Sbjct: 528 DELSYSSLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSETEKAF 587

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             L   +    +   N+M+  YGK R+  K E +   M       S  TY  ++ MY   
Sbjct: 588 LELGRRRCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSRL 647

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            +  +   I  E+   G      + N M+ AY   G   EA  LF    + G+ PD  TY
Sbjct: 648 GDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTY 707

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            +  K+Y   +M E    L++ M   G  PN+R +   L+ +
Sbjct: 708 NIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEY 749



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 145/321 (45%), Gaps = 4/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L++   +  + R A+ +F  M  +G +P    YN ++  H++++  A      
Sbjct: 177 DASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVL--HVYSK-IAVPWKDV 233

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +     MK  +    +  TYN L+  C +     +   +F E+  +   PD  T+N ++D
Sbjct: 234 VALVDSMKN-DGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLD 292

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK  M  E   VL  M+   C P ++T+N LI SY K     +  ++ + +     +P
Sbjct: 293 VYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQP 352

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ ++I    +A     A   + +M      P+  TY  +I ++G          +F
Sbjct: 353 DVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVF 412

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D+L   G    V T N +L  +  NGL +E   +F+     G  P+  TY  L  +Y++ 
Sbjct: 413 DDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRC 472

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
            + +   ++ KRM + GI P+
Sbjct: 473 GLFDQSMEIYKRMIEAGIYPD 493



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 155/353 (43%), Gaps = 40/353 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI+   K G  + A  L  EM   G +PD   Y  LI+      D+A  +  A+G +
Sbjct: 322 YNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISG----LDRAGKIDAAIGTY 377

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M     CKPN+ TYN L++         ++ A+F +L  +   PD+ T+N ++  +G+
Sbjct: 378 DEML-RNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQ 436

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           NG+  E+  V   MK +   P+  T+  LI SY +   FD+  +++K ++ +   P + T
Sbjct: 437 NGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDIST 496

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC-------------- 239
           +N+++    +     +AE +F +M  +   P  ++Y  ++  Y                 
Sbjct: 497 YNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKMKALSEDIY 556

Query: 240 ---------------------DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
                                +N+S   + F EL +    + ++ LNAM+  Y  N +  
Sbjct: 557 AEKIESHHGLVKTLVLVNSKVNNLSETEKAFLELGRRRCSLDINVLNAMVSVYGKNRMVK 616

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           + + +        +   ++TY  L   Y++    E  + +L  ++ +G  P++
Sbjct: 617 KVEEILSLMKGSSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSGARPDR 669



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 130/291 (44%), Gaps = 32/291 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALA 67
           D   Y+ +++ + + G+   A  LF+EM N  CRPD   Y++L+ A+ + +  DK KAL+
Sbjct: 493 DISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKMKALS 552

Query: 68  KALGYFQKMK-----------------------------GMERCKPNIVTYNILLRACAQ 98
           + + Y +K++                             G  RC  +I   N ++    +
Sbjct: 553 EDI-YAEKIESHHGLVKTLVLVNSKVNNLSETEKAFLELGRRRCSLDINVLNAMVSVYGK 611

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
            R V +V  +   +  S +     TYN +M  Y + G  ++ E++L+ +KS+  +PD  +
Sbjct: 612 NRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYS 671

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +N +I +YG++    +  ++F  +  S   P + T+N  + +Y    +  +A  + + M 
Sbjct: 672 YNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMV 731

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
                P+  TY  I+  Y     ++ A+     L +L   +       +LE
Sbjct: 732 TRGCKPNERTYNSILQEYCRHGKIADAKSFLSNLPQLHPGISKQEQQRLLE 782


>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
 gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
          Length = 597

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 155/321 (48%), Gaps = 9/321 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+      GQ   A  + SEM+ +G  P  +VYNA +   L    KA+   KA+  +
Sbjct: 210 YALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLL----KARCSEKAVEVY 265

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           Q+MK  ERC+ N  TY +++    +A        +F+E+      P+I TY  +++A+ +
Sbjct: 266 QRMK-KERCRTNTZTYXLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAR 324

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G+ ++ E V   M+    +PD+  +N L+++Y +        ++F  + H   +P   +
Sbjct: 325 EGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRAS 384

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N ++  +G+A L  +AE  FQ++      P+  ++  +++ +    NV+R  E+  +L 
Sbjct: 385 YNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLH 444

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLF----ENSHNMGVTPDSSTYKLLYKAYTKA 309
           K G       LNAML AY   G   + + LF             PD+STY +L  AY +A
Sbjct: 445 KSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGASAGAPDTSTYNVLVNAYGRA 504

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              + ++   + +   G+  +
Sbjct: 505 GYLDRMEAAFRSLAARGLAAD 525



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 130/262 (49%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P+I+ YN+L+ A  Q R + +  A +  L E+   P   TY  ++ AY  +G +   E 
Sbjct: 169 RPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLHRAEG 228

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           V+S M+ N   P    +N  +D   K +  +K  +V++ +   + +    T+  MI  YG
Sbjct: 229 VISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTYXLMINVYG 288

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           KA     +  VF++M ++   P+  TY  ++  +       +A E+F+E+ + G +  V 
Sbjct: 289 KANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVY 348

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
             NA++EAY   GLP  A  +F    +MG  PD ++Y +L  A+ +A + +  +   + +
Sbjct: 349 AYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQEL 408

Query: 323 EQNGIVPNKRFFLEALETFSSS 344
           +Q G+ P  +  +  L   + S
Sbjct: 409 KQQGMRPTMKSHMLLLSAHARS 430



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 142/302 (47%), Gaps = 6/302 (1%)

Query: 37  MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 96
           +R S  RPD   YN LI A+   R  ++A A  +   +      RC P   TY +LLRA 
Sbjct: 163 LRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEA-----RCVPTEDTYALLLRAY 217

Query: 97  AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
             +  + +   +  E+  + + P    YN  +D   K    ++   V  RMK  +C+ + 
Sbjct: 218 CGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNT 277

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
            T+ L+I+ YGK        +VF+ +     KP + T+ +++  + +  L  KAE VF++
Sbjct: 278 ZTYXLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEE 337

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M    + P    Y  ++  Y        A EIF  +  +G +   ++ N +++A+   GL
Sbjct: 338 MQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGL 397

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
             EA+  F+     G+ P   ++ LL  A+ ++      ++++ ++ ++G+ P+  F L 
Sbjct: 398 HQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDT-FALN 456

Query: 337 AL 338
           A+
Sbjct: 457 AM 458



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 133/264 (50%), Gaps = 16/264 (6%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +Q  +  D   Y+ L+    + G  + A  +FS M + GC PD + YN L+ A      +
Sbjct: 339 QQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAF----GR 394

Query: 63  AKALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           A    +A   FQ++K  GM   +P + ++ +LL A A++ NV +   +  +LH+S L PD
Sbjct: 395 AGLHQEAEAAFQELKQQGM---RPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPD 451

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMK----SNQCKPDIITFNLLIDSYGKRQAFDKME 176
            +  N +++AYG+ G + +ME + + M+    ++   PD  T+N+L+++YG+    D+ME
Sbjct: 452 TFALNAMLNAYGRAGRLDDMERLFAAMERGDGASAGAPDTSTYNVLVNAYGRAGYLDRME 511

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
             F+SL        + T+ S I  Y + +  G+   VF++M      P   T + ++   
Sbjct: 512 AAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGTAKVLLAA- 570

Query: 237 GYCDNVSRAREIFDELSKLGKDMK 260
             C +  +  ++   +  + KD K
Sbjct: 571 --CSDERQVEQVTAIVRSMHKDAK 592


>gi|168000162|ref|XP_001752785.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695948|gb|EDQ82289.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 482

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 159/346 (45%), Gaps = 17/346 (4%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q W+      ++ +IA  GK GQ  +A   F+EMR  G  P+ + + +L+ AH  T 
Sbjct: 97  LKQQDWWNFGIHDFNLMIAAYGKLGQPGIAELSFTEMREVGLEPNVACFTSLLEAHARTG 156

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA-P 119
           +      +A   +Q+M       P  VTY + + A  +A   +    +FK L ES  A P
Sbjct: 157 N----FVRAESIYQEMLKTGPA-PTEVTYQVYINALCKAERFNDAERIFKCLDESAEAKP 211

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM---- 175
           D   YN ++  YGK G   E +++  +MK       ++TFN L+       AF K     
Sbjct: 212 DARLYNLMLHTYGKAGKFSEQQALFRQMKGAGVPMTVVTFNSLM-------AFQKTVADA 264

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
           E   + +  +K KP + T+  +I  Y KAR   +A  VF++M A    PS I Y  ++  
Sbjct: 265 EACLRHMQAAKIKPDVITYTGLINAYSKARRVEEAHVVFREMVASGLRPSRIAYNTLLDA 324

Query: 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           Y  C  V  A  +F  + +      + +   +L AY   G   +A+ L +     G+ P+
Sbjct: 325 YAKCKEVEGAESLFKSMGQDRCRPDIRSYTTLLAAYANTGNMKKAERLLKRMKQAGLEPN 384

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
             TY  L + YT  +    + +  + +++ GI PN   F   + TF
Sbjct: 385 VVTYGTLMQGYTSVHDINAMLQTFEDLQKAGIKPNSTIFTLLVRTF 430



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 122/261 (46%), Gaps = 8/261 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ ++   GK G+      LF +M+ +G       +N+L+          K +A A
Sbjct: 212 DARLYNLMLHTYGKAGKFSEQQALFRQMKGAGVPMTVVTFNSLMAFQ-------KTVADA 264

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               + M+   + KP+++TY  L+ A ++AR V++ + +F+E+  S L P    YN ++D
Sbjct: 265 EACLRHMQAA-KIKPDVITYTGLINAYSKARRVEEAHVVFREMVASGLRPSRIAYNTLLD 323

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           AY K   ++  ES+   M  ++C+PDI ++  L+ +Y       K E++ K +  +  +P
Sbjct: 324 AYAKCKEVEGAESLFKSMGQDRCRPDIRSYTTLLAAYANTGNMKKAERLLKRMKQAGLEP 383

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ +++  Y            F+ +      P+   +  ++  +G  ++   A   F
Sbjct: 384 NVVTYGTLMQGYTSVHDINAMLQTFEDLQKAGIKPNSTIFTLLVRTFGQQEDFESALSWF 443

Query: 250 DELSKLGKDMKVSTLNAMLEA 270
            ++   G      +  A+++A
Sbjct: 444 KKMLDSGCPADQRSRAALMDA 464



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 9/171 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD--KAKALAKALG 71
           Y+ L+    K  +   A  LF  M    CRPD   Y  L+ A+ +T +  KA+ L K + 
Sbjct: 318 YNTLLDAYAKCKEVEGAESLFKSMGQDRCRPDIRSYTTLLAAYANTGNMKKAERLLKRM- 376

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
              K  G+E   PN+VTY  L++      +++ +   F++L ++ + P+   +  ++  +
Sbjct: 377 ---KQAGLE---PNVVTYGTLMQGYTSVHDINAMLQTFEDLQKAGIKPNSTIFTLLVRTF 430

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           G+    +   S   +M  + C  D  +   L+D+    +   ++ + F SL
Sbjct: 431 GQQEDFESALSWFKKMLDSGCPADQRSRAALMDACQTSEQKQEVLEYFGSL 481


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 159/363 (43%), Gaps = 38/363 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L+A   K+ Q   ++ LF EM   GC  D S Y+ +I     + D    + +AL  F
Sbjct: 601 YSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDD----VDQALDVF 656

Query: 74  QKMK--GME--------------------------------RCKPNIVTYNILLRACAQA 99
            +MK  GME                                   P+   YNI++    ++
Sbjct: 657 GRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKS 716

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
             VD+   L   +    + PD++TY  ++D  GK+G ++E  ++ ++M     +PD++ +
Sbjct: 717 NRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAY 776

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
             L+D  GK         +F+++   +  P + T++S+I + GK     +A Y F+   +
Sbjct: 777 TSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSIS 836

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
              TP+   Y  +I  +G    V RA E+F+E+ +      + T N +L      G    
Sbjct: 837 KGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNV 896

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
           A+ L E    +G  PD  TY +L     K  M +  +   KRM++ GIVP+   F   +E
Sbjct: 897 AEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIE 956

Query: 340 TFS 342
           +  
Sbjct: 957 SLG 959



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 142/300 (47%), Gaps = 5/300 (1%)

Query: 3    KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
            K +  + D   Y+ L+  +GK G+   A  +F++M   G  PD   Y +L    +    K
Sbjct: 730  KNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSL----MDVLGK 785

Query: 63   AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
               L+ AL  F+ M   +RC P++VTY+ L+ +  +   V++    F+        P++ 
Sbjct: 786  GGKLSHALIIFRAM-AKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVG 844

Query: 123  TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
             Y+ ++D++GK GM+     +   M+  QC P+I+T+N L+    K    +  E++ + +
Sbjct: 845  VYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEM 904

Query: 183  MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                  P L T+N +I   GK  +  +AE  F++M      P  IT+  +I   G  D +
Sbjct: 905  EKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKL 964

Query: 243  SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
              A E+FD + + G +  V T N +++     G   EA ++F      G  PD  T  ++
Sbjct: 965  LEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIM 1024



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 155/319 (48%), Gaps = 5/319 (1%)

Query: 12  GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           G Y  L++ + K  +   A+ +F+E++ S   PD  VYN ++   +    K+  + +A  
Sbjct: 669 GNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLV----KSNRVDEACK 724

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
               MK  +   P++ TY  LL    ++  +++   +F ++ E    PD+  Y  +MD  
Sbjct: 725 LVDSMKN-QNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVL 783

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           GK G +     +   M   +C PD++T++ LIDS GK    ++    F++ +     P +
Sbjct: 784 GKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNV 843

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             ++S+I ++GK  +  +A  +F++M   +  P+ +TY  +++       ++ A ++ +E
Sbjct: 844 GVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEE 903

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + K+G    + T N +++     G+  EA+  F+     G+ PD  T+  L ++  K + 
Sbjct: 904 MEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDK 963

Query: 312 KELVQKLLKRMEQNGIVPN 330
                +L   ME+ G  P+
Sbjct: 964 LLEACELFDSMEEEGYNPS 982



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 143/323 (44%), Gaps = 5/323 (1%)

Query: 8    IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
            + DT +Y+ ++  + K  +   A  L   M+N    PD   Y +L    L    K+  L 
Sbjct: 700  VPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSL----LDGLGKSGRLE 755

Query: 68   KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            +A   F KM   E  +P++V Y  L+    +   +     +F+ + +    PD+ TY+ +
Sbjct: 756  EAFNMFTKMT-EEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSL 814

Query: 128  MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
            +D+ GK G ++E         S  C P++  ++ LIDS+GK+   D+  ++F+ +   + 
Sbjct: 815  IDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQC 874

Query: 188  KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
             P + T+N+++    KA     AE + ++M  +   P  +TY  +I   G    V  A  
Sbjct: 875  PPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAES 934

Query: 248  IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
             F  + + G    V T  +++E+        EA  LF++    G  P   TY +L     
Sbjct: 935  YFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILG 994

Query: 308  KANMKELVQKLLKRMEQNGIVPN 330
            +A        +   M+  G +P+
Sbjct: 995  RAGKVHEAAMIFHEMKVKGCMPD 1017



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 154/319 (48%), Gaps = 9/319 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  +GK G+   A+ L  EM   GC P    Y++L+ A  + RD+ +   ++L  F
Sbjct: 566 YTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLM-ASFYKRDQEE---ESLSLF 621

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  KG   C  ++ TY++++    ++ +VDQ   +F  + E  + P +  Y  ++ + 
Sbjct: 622 DEMVRKG---CVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSL 678

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K+  I     + + ++ +   PD   +N++++   K    D+  ++  S+ +    P L
Sbjct: 679 VKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDL 738

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+ S++   GK+    +A  +F KMT   + P  + Y  ++ + G    +S A  IF  
Sbjct: 739 FTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRA 798

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           ++K      V T ++++++    G   EA   FENS + G TP+   Y  L  ++ K  M
Sbjct: 799 MAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGM 858

Query: 312 KELVQKLLKRMEQNGIVPN 330
            +   +L + M++    PN
Sbjct: 859 VDRALELFEEMQRRQCPPN 877



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 146/368 (39%), Gaps = 60/368 (16%)

Query: 12  GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           G Y   + V GK GQ R+             +PD   +   +    H+ +++  L  A  
Sbjct: 266 GFYHSAVIVFGKLGQFRI-------------QPDAQTFRIFV----HSFNRSGRLDPAAE 308

Query: 72  YFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
             Q+M   G++   P + T+ +L+ A  ++ N+D+    F  +     +P++ TY  +++
Sbjct: 309 PIQEMIKSGID---PGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVN 365

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K G ++E   V   MK N C PD I +N LID  GK    D    +FK +      P
Sbjct: 366 GLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVP 425

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            L T+N MI   GKA  Q +A  +F  +      P   TY  +I + G    + +   I 
Sbjct: 426 NLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAII 485

Query: 250 DELSKLGKDMKVS-------------------------------TLNAMLEAYCMNGLPT 278
            E+ + G +  +S                               T N ++ A+  NG   
Sbjct: 486 KEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVD 545

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           EA  L E        P   TY  L     KA   +    LL+ ME+ G  P       ++
Sbjct: 546 EAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEP-------SV 598

Query: 339 ETFSSSLA 346
            T+SS +A
Sbjct: 599 VTYSSLMA 606



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 161/369 (43%), Gaps = 43/369 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI  +GK G+  +A  LF EM++ G  P+   YN +I+       KA    +A
Sbjct: 391 DAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMIS----VLGKAGRQPEA 446

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL----------------H 113
              F  +K  +   P++ TYN L+    +   +D+V A+ KE+                H
Sbjct: 447 WQLFHDLK-EQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGH 505

Query: 114 ESILA--------PDI-------YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
           E  +         P +        TYN +M A+  NG + E   +L  MK ++C P ++T
Sbjct: 506 EGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVT 565

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +  L+D  GK    D+   + + +     +P++ T++S++ ++ K   + ++  +F +M 
Sbjct: 566 YTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMV 625

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
                    TY  +I      D+V +A ++F  + + G +  +     +L +   +    
Sbjct: 626 RKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKID 685

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
            A  +F       + PD+  Y ++     K+N  +   KL+  M+   I+P+       L
Sbjct: 686 FALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPD-------L 738

Query: 339 ETFSSSLAG 347
            T++S L G
Sbjct: 739 FTYTSLLDG 747



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 131/324 (40%), Gaps = 5/324 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +Q  Y    G Y+ +I  +    +T   + + + M   G R    +   L+T+ L T   
Sbjct: 174 QQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHR----ISMHLLTSLLRTFGS 229

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              ++ AL  F +MK    C P+   YN +L    +         +F +L +  + PD  
Sbjct: 230 TNNVSGALEIFNQMKSF-GCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQ 288

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           T+   + ++ ++G +      +  M  +   P + TF +LID+  K    D+  + F  +
Sbjct: 289 TFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGM 348

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
            + +  P + T+ +++    KA    +A  VF +M     +P  I Y  +I   G     
Sbjct: 349 KNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEA 408

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A  +F E+   G    + T N M+      G   EA  LF +    G  PD  TY  L
Sbjct: 409 DMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTL 468

Query: 303 YKAYTKANMKELVQKLLKRMEQNG 326
                K    + V  ++K M + G
Sbjct: 469 IDVLGKGGQMDKVLAIIKEMVEKG 492



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 100/242 (41%), Gaps = 6/242 (2%)

Query: 92  LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151
           LLR      NV     +F ++      P    YN V++   K G       V  ++   +
Sbjct: 223 LLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFR 282

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
            +PD  TF + + S+ +    D   +  + ++ S   P + TF  +I    K+    +A 
Sbjct: 283 IQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEAC 342

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
             F  M  ++ +P+ +TY  ++        +  A E+F E+ +          N +++  
Sbjct: 343 KFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGL 402

Query: 272 CMNGLPTEADL---LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
              G   EAD+   LF+   + G+ P+  TY ++     KA  +    +L   +++ G V
Sbjct: 403 ---GKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAV 459

Query: 329 PN 330
           P+
Sbjct: 460 PD 461



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 103/252 (40%), Gaps = 10/252 (3%)

Query: 88  TYNILLRACAQARNVDQV----NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           TY ++++  A A+  D V     A++KE H       ++    ++  +G    +     +
Sbjct: 184 TYTLMIKRLAGAQETDAVVQILTAMWKEGHRI----SMHLLTSLLRTFGSTNNVSGALEI 239

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
            ++MKS  C P    +N +++   K   +     VF  L   + +P   TF   + ++ +
Sbjct: 240 FNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNR 299

Query: 204 A-RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           + RL   AE + Q+M      P   T+  +I       N+  A + F+ +  L     V 
Sbjct: 300 SGRLDPAAEPI-QEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVV 358

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T   ++      G   EA  +F        +PD+  Y  L     KA   ++   L K M
Sbjct: 359 TYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEM 418

Query: 323 EQNGIVPNKRFF 334
           +  G+VPN R +
Sbjct: 419 KDRGLVPNLRTY 430



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 10/160 (6%)

Query: 190 TLPTFNSMIINYGKARLQGKAEY--VFQKMTAMKYTPSFITYECIITM---YGYCDNVSR 244
           T+ T+  MI      RL G  E   V Q +TAM      I+   + ++   +G  +NVS 
Sbjct: 181 TVGTYTLMI-----KRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSG 235

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A EIF+++   G +   +  N +LE     G    A ++F       + PD+ T+++   
Sbjct: 236 ALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVH 295

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           ++ ++   +   + ++ M ++GI P    F   ++    S
Sbjct: 296 SFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKS 335


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 149/317 (47%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI  + K G+   AM LF +M   GCRPD   Y  +I        K    A A G  
Sbjct: 171 FTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLC----KIGETAAAAGLL 226

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KM+    C+PN+VTY+ ++ +  + R V++   +F  +    ++PDI+TYN ++     
Sbjct: 227 KKMEE-AGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCN 285

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
               KE  ++L+ M+S    PDI+TFN+L+D+  K     + + V K++     +P + T
Sbjct: 286 FSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVT 345

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           ++S++  Y       +A  +F  M      P   +Y  +I  Y     +  A+++F+E+ 
Sbjct: 346 YSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMI 405

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G      + N ++   C  G   EA  LF+N H  G  P+  TY +L   + K     
Sbjct: 406 HQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFG 465

Query: 314 LVQKLLKRMEQNGIVPN 330
              +L + M+     PN
Sbjct: 466 KAFRLFRAMQSTYSKPN 482



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 158/327 (48%), Gaps = 9/327 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I  + K G+T  A  L  +M  +GC+P+   Y+ +I +H   R   +AL   
Sbjct: 202 DVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALD-- 259

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +  + K+KG+    P+I TYN L++         + +AL  E+    + PDI T+N ++D
Sbjct: 260 IFSYMKVKGIS---PDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVD 316

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K G + E + VL  M     +PD++T++ L+  Y  R    +  ++F +++    KP
Sbjct: 317 TICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKP 376

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRARE 247
            + ++N +I  Y K +   +A+ +F +M     TP+ ++Y  +I  +G C   ++  AR 
Sbjct: 377 DVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLI--HGLCQLGSLREARN 434

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F  +   G    + T + +L+ +C  G   +A  LF    +    P+   Y +L  A  
Sbjct: 435 LFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMC 494

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFF 334
           K+      +KL   +   G+ PN + +
Sbjct: 495 KSGNLRDARKLFSELFVKGLQPNAQIY 521



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 146/321 (45%), Gaps = 12/321 (3%)

Query: 14  YSKLIAVMGKKGQT-RLAMWLFSEMRNSGCRPDPSVYNALIT--AHLHTRDKA-KALAKA 69
           ++KL++ + K GQ     + L  +M  +G  P+    + LI   +HL   D A   LAK 
Sbjct: 100 FTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKI 159

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +       G++   P IVT+  L+    +     Q   LF ++      PD+YTY  +++
Sbjct: 160 IKL-----GLQ---PTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIIN 211

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K G       +L +M+   C+P+++T++ +IDS+ K +  ++   +F  +      P
Sbjct: 212 GLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISP 271

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+NS+I          +A  +  +M ++   P  +T+  ++        VS A+ + 
Sbjct: 272 DIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVL 331

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             ++++G +  V T ++++  Y +     EA  LF+     G  PD  +Y +L   Y K 
Sbjct: 332 KTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKV 391

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +  ++L   M   G+ PN
Sbjct: 392 KRIDEAKQLFNEMIHQGLTPN 412



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 141/321 (43%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI  +    Q + A  L +EMR+    PD   +N L+     T  K   +++A
Sbjct: 272 DIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLV----DTICKEGKVSEA 327

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            G  + M  M   +P++VTY+ L+   +    V +   LF  +      PD+++YN +++
Sbjct: 328 QGVLKTMTEMG-VEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILIN 386

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y K   I E + + + M      P+ +++N LI    +  +  +   +FK++  +   P
Sbjct: 387 GYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLP 446

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            L T++ ++  + K    GKA  +F+ M +    P+ + Y  +I       N+  AR++F
Sbjct: 447 NLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLF 506

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            EL   G          ++   C  GL  EA   F N    G  PD  +Y ++ + +   
Sbjct: 507 SELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHH 566

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
             +    +L+  M   G + +
Sbjct: 567 KDESRAVQLIGEMRDKGFIAD 587



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 117/256 (45%), Gaps = 9/256 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS L+     + +   A  LF  M   GC+PD   YN LI  +     K K + +A
Sbjct: 342 DVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYC----KVKRIDEA 397

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F +M  +G+    PN V+YN L+    Q  ++ +   LFK +H +   P+++TY+ +
Sbjct: 398 KQLFNEMIHQGL---TPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSIL 454

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D + K G   +   +   M+S   KP+++ +N+LID+  K        ++F  L     
Sbjct: 455 LDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGL 514

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P    + ++I    K  L  +A   F+ M      P  I+Y  II  + +  + SRA +
Sbjct: 515 QPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQ 574

Query: 248 IFDELSKLGKDMKVST 263
           +  E+   G    V T
Sbjct: 575 LIGEMRDKGFIADVGT 590



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 114/248 (45%), Gaps = 1/248 (0%)

Query: 84  PNIVTYNILLRACAQ-ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           P I+ +  LL A  +  +  D V +L K++  + L+P+IYT + +++ +     +    S
Sbjct: 95  PCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSILINCFSHLQRVDLAFS 154

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           VL+++     +P I+TF  LI+   K   F +  ++F  ++    +P + T+ ++I    
Sbjct: 155 VLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLC 214

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           K      A  + +KM      P+ +TY  II  +     V+ A +IF  +   G    + 
Sbjct: 215 KIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIF 274

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T N++++  C      EA  L     ++ + PD  T+ +L     K       Q +LK M
Sbjct: 275 TYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTM 334

Query: 323 EQNGIVPN 330
            + G+ P+
Sbjct: 335 TEMGVEPD 342


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 156/329 (47%), Gaps = 9/329 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R   AD   YS +I  + + G    A+ LF EM   G +     YN+L+        KA
Sbjct: 198 ERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLC----KA 253

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
                 +   + M    +  PN++T+N+L+    +   + + N L+KE+    ++P+  T
Sbjct: 254 GKWNDGVQLLKDMTS-RKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTIT 312

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN +MD Y     + E  ++L  M  N C PDI+TF  LI  Y K +  D+  ++F+ + 
Sbjct: 313 YNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKIS 372

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN-- 241
                    T++ ++  + ++     AE +FQ+M ++   P  +TY   I + G CDN  
Sbjct: 373 KRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYG--ILLDGLCDNGK 430

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           + +A EIF++L K   ++ +     ++E  C  G   +A  LF +    GV P+  TY +
Sbjct: 431 LEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 490

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +     K         LL++ME++G  PN
Sbjct: 491 MISGLCKKGSLSEANILLRKMEEDGNEPN 519



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 142/297 (47%), Gaps = 7/297 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  DT  ++ LI  +  + +   A+ L + M  +GC+P+   YN+++     + D + AL
Sbjct: 131 YEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLAL 190

Query: 67  AKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
                  +KM   ER  K ++ TY+ ++ +  +   +D   +LFKE+    +   + TYN
Sbjct: 191 ----DLLRKMD--ERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYN 244

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++    K G   +   +L  M S +  P++ITFN+LID + K     +  +++K ++  
Sbjct: 245 SLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITK 304

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P   T+NS++  Y       +A  +   M     +P  +T+  +I  Y     V   
Sbjct: 305 GISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEG 364

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            ++F ++SK G      T + +++ +C +G    A+ LF+   ++GV PD  TY +L
Sbjct: 365 MKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGIL 421



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 144/307 (46%), Gaps = 9/307 (2%)

Query: 26  QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85
           +T  A  +  ++   G  PD + +N LI         ++A+       +       C+PN
Sbjct: 115 KTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVEN-----GCQPN 169

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           +VTYN ++    ++ +      L +++ E  +  D++TY+ ++D+  ++G I    S+  
Sbjct: 170 VVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFK 229

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
            M++   K  ++T+N L+    K   ++   Q+ K +   K  P + TFN +I  + K  
Sbjct: 230 EMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEG 289

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVST 263
              +A  ++++M     +P+ ITY  +  M GYC  + +S A  + D + +      + T
Sbjct: 290 KLQEANELYKEMITKGISPNTITYNSL--MDGYCMQNRLSEANNMLDLMVRNNCSPDIVT 347

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
             ++++ YC      E   LF      G+  ++ TY +L + + ++   E+ ++L + M 
Sbjct: 348 FTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMV 407

Query: 324 QNGIVPN 330
             G++P+
Sbjct: 408 SLGVLPD 414



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 120/262 (45%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P+  T+N L+        V +   L   + E+   P++ TYN +++   K+G       
Sbjct: 132 EPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALD 191

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +L +M     K D+ T++ +IDS  +    D    +FK +     K +L T+NS++    
Sbjct: 192 LLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLC 251

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           KA        + + MT+ K  P+ IT+  +I ++     +  A E++ E+   G      
Sbjct: 252 KAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTI 311

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T N++++ YCM    +EA+ + +       +PD  T+  L K Y K    +   KL +++
Sbjct: 312 TYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKI 371

Query: 323 EQNGIVPNKRFFLEALETFSSS 344
            + G+V N   +   ++ F  S
Sbjct: 372 SKRGLVANTVTYSILVQGFCQS 393



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 144/308 (46%), Gaps = 11/308 (3%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTRDKA 63
           R  I +   ++ LI V  K+G+ + A  L+ EM   G  P+   YN+L+  + +  R   
Sbjct: 269 RKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNR--- 325

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L++A      M     C P+IVT+  L++   + + VD+   LF+++ +  L  +  T
Sbjct: 326 --LSEANNMLDLMV-RNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVT 382

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ ++  + ++G ++  E +   M S    PD++T+ +L+D        +K  ++F+ L 
Sbjct: 383 YSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQ 442

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DN 241
            SK    +  +  +I    K      A  +F  +      P+ +TY  +I+  G C   +
Sbjct: 443 KSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS--GLCKKGS 500

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +S A  +  ++ + G +    T N ++ A+  +G  T +  L E   + G + D+S+ K+
Sbjct: 501 LSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKM 560

Query: 302 LYKAYTKA 309
           +    + A
Sbjct: 561 VIDMLSSA 568



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 8/198 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R  +A+T  YS L+    + G+  +A  LF EM + G  PD   Y  L+       D  
Sbjct: 373 KRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLC---DNG 429

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           K L KAL  F+ ++   +   +IV Y I++    +   V+    LF  L    + P++ T
Sbjct: 430 K-LEKALEIFEDLQK-SKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMT 487

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY---GKRQAFDKMEQVFK 180
           Y  ++    K G + E   +L +M+ +  +P+  T+N LI ++   G   A  K+ +  K
Sbjct: 488 YTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMK 547

Query: 181 SLMHSKEKPTLPTFNSMI 198
           S   S +  ++     M+
Sbjct: 548 SCGFSADASSIKMVIDML 565



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 96/255 (37%)

Query: 87  VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 146
           V Y   LR+       D    LF+E+  S   P +  ++              +     +
Sbjct: 31  VCYGERLRSGIVDIKEDDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKK 90

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           M+ N    +I T N++I+ + +         V   +M    +P   TFN++I        
Sbjct: 91  MELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESK 150

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
             +A  +  +M      P+ +TY  I+       + S A ++  ++ +      V T + 
Sbjct: 151 VSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYST 210

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           ++++ C +G    A  LF+     G+     TY  L     KA       +LLK M    
Sbjct: 211 IIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRK 270

Query: 327 IVPNKRFFLEALETF 341
           I+PN   F   ++ F
Sbjct: 271 IIPNVITFNVLIDVF 285


>gi|302761054|ref|XP_002963949.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
 gi|300167678|gb|EFJ34282.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
          Length = 1365

 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 155/318 (48%), Gaps = 6/318 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK-ALAKALG 71
           +Y+ L++V  + G       L   M++ GCRPD   +N +I A   TR   +  LA +L 
Sbjct: 127 VYNSLMSVYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKAR--TRGGMQEGLASSLL 184

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
                 G+   +P+ +TYN L+ AC+    +     +F+E+      PDI+TYN ++  Y
Sbjct: 185 QDVYAAGL---RPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVY 241

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           G+ G ++   S+   M+     PD +T+N ++ ++ +    +++E++   +  ++     
Sbjct: 242 GRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDE 301

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+N+MI  YGKA +  KAE ++ +M      P  +T+  +I   G    V+ A  +F++
Sbjct: 302 ITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFED 361

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + K      +   +AM+ AY    + T+A+  +      GV PD   Y ++   + KA M
Sbjct: 362 MLKSQVRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAGM 421

Query: 312 KELVQKLLKRMEQNGIVP 329
            E    L K M  +G+ P
Sbjct: 422 PEKCIILYKAMVGSGLKP 439



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 151/301 (50%), Gaps = 9/301 (2%)

Query: 26  QTRLAMWLFSEMRNSGCRPDPSVYNALITA-HLHTRDKAKALAKALGYFQKMKGMERCKP 84
           Q  LA  L  ++  +G RPD   YN LI+A  L+ R     L+ A+  F++M+  + C P
Sbjct: 176 QEGLASSLLQDVYAAGLRPDTITYNTLISACSLNNR-----LSDAILIFEEMQ-RQGCDP 229

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           +I TYN ++    +A  V+  +++F+ + E    PD  TYN V+ A+ ++G I+E+E + 
Sbjct: 230 DIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIR 289

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             M+  +C  D IT+N +I  YGK     K E+++  +      P   TF  +I   GKA
Sbjct: 290 GMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKA 349

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
               +A  +F+ M   +  P+   +  +I  Y   D  + A   +  + + G    +   
Sbjct: 350 GFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAY 409

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA-YTKANMKELVQKLLKRME 323
           + ML+ +   G+P +  +L++     G+ P+ S Y ++ +  Y K+++ E ++ L K M 
Sbjct: 410 SVMLDVFFKAGMPEKCIILYKAMVGSGLKPELSVYAIMVRVFYQKSSVAE-IENLSKEMV 468

Query: 324 Q 324
           Q
Sbjct: 469 Q 469



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 155/323 (47%), Gaps = 5/323 (1%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D+ ++  +IA  GK    + A  +F +++  G   + S Y+AL++A+  T +  +A  
Sbjct: 643 VKDSAMHVAIIASYGKLKLWQNAEIVFRDLQQHGFAGNTSAYSALLSAYAETGNFERA-T 701

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +AL       G++   PN    N +L A  +A    +++  F+ L E  ++P+  T+  +
Sbjct: 702 RALDNMVA-AGLQ---PNATCANYVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVI 757

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
             A+ +NG ++E  S+  +MK     P I  F  L+  Y +       E++ K +  +  
Sbjct: 758 FHAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGL 817

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +  +  +N MI  Y K      A  VF+ M  +  +P   T+  +I +Y     V  A+ 
Sbjct: 818 ELDIDIYNHMISLYSKLGSYRNAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQA 877

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +  E+ K G    +ST   ++ AY       +A+L+F++    G  PD++ Y ++   Y 
Sbjct: 878 LLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYR 937

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           KA     +++++++M+ +G  P+
Sbjct: 938 KAGEHRKIEEIIEQMKVDGFEPS 960



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/328 (21%), Positives = 152/328 (46%), Gaps = 5/328 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +Q  +  +T  YS L++   + G    A      M  +G +P+ +  N ++ A      K
Sbjct: 673 QQHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNATCANYVLEA-FGRAGK 731

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           AK +++   +FQ++  M    PN  T+ ++  A ++  N+++  ++++++ E+  +P I 
Sbjct: 732 AKEISE---FFQRLPEMG-ISPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQ 787

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            +  ++  Y +  +  + E ++  +K    + DI  +N +I  Y K  ++     VFK +
Sbjct: 788 VFKALLALYSRETVEIDAEELVKDIKKAGLELDIDIYNHMISLYSKLGSYRNAALVFKGM 847

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 P   TFN++I+ Y + ++  +A+ + ++M      P+  TY  +I+ YG     
Sbjct: 848 QEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAY 907

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A  +F  +++ G     +  N M+  Y   G   + + + E     G  P  +T  +L
Sbjct: 908 EDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEIIEQMKVDGFEPSLTTIHML 967

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +Y K       +++L+ + + G+ P+
Sbjct: 968 MDSYGKGGATGKAEEVLETLPEIGMSPD 995



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 139/314 (44%), Gaps = 5/314 (1%)

Query: 23   KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82
            + G    A  ++ +M+ +G  P   V+ AL+   L++R+  +  A+ L    K  G+E  
Sbjct: 763  RNGNLEEARSMYRQMKEAGFSPSIQVFKALLA--LYSRETVEIDAEELVKDIKKAGLEL- 819

Query: 83   KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
              +I  YN ++   ++  +      +FK + E   +PD  T+N ++  Y +N M++E ++
Sbjct: 820  --DIDIYNHMISLYSKLGSYRNAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQA 877

Query: 143  VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
            +L  M      P+I T+  LI +YG+ QA++  E VFKS+  +  KP    +N MI  Y 
Sbjct: 878  LLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYR 937

Query: 203  KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
            KA    K E + ++M    + PS  T   ++  YG      +A E+ + L ++G      
Sbjct: 938  KAGEHRKIEEIIEQMKVDGFEPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDAI 997

Query: 263  TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
               +++ ++  N     A +      +  V P   T      A +          LLK +
Sbjct: 998  HYTSIINSHLNNKDYLSAVIWLRKMTDACVRPTHVTITCFVGAASVCERSSHALMLLKAL 1057

Query: 323  EQNGIVPNKRFFLE 336
             + G     R   E
Sbjct: 1058 SEAGFSLPLRLMTE 1071



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 130/297 (43%), Gaps = 8/297 (2%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +AL  ++ +       PN     ++L    +A        LF +  ES +   +  YN +
Sbjct: 73  RALELYECLNVARWYAPNPRMLAVMLSVLGRANQPGLAQELF-DRAESSIGNCVQVYNSL 131

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH--- 184
           M  Y ++G    ++ +L RM+   C+PD++TFN++I +   R      E +  SL+    
Sbjct: 132 MSVYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKA---RTRGGMQEGLASSLLQDVY 188

Query: 185 -SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
            +  +P   T+N++I           A  +F++M      P   TY  +I++YG    V 
Sbjct: 189 AAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVE 248

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  IF  + + G      T N++L A+  +G   E + +     +   + D  TY  + 
Sbjct: 249 AASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMI 308

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRS 360
             Y KA M    ++L  +M++ G  P+   F   ++T   +   +++ +   D+ +S
Sbjct: 309 HMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKS 365



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 99/198 (50%), Gaps = 6/198 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ+Q  +  D   Y+ ++    + G+      +   MR++ C  D   YN +I    H  
Sbjct: 257 MQEQG-FTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMI----HMY 311

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            KA    KA   + +MK   RC P+ VT+ +L+    +A  V++  A+F+++ +S + P 
Sbjct: 312 GKAGMHRKAEELYVQMKEEGRC-PDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPT 370

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           +  ++ ++ AY K  M  + E   S M     +PD++ +++++D + K    +K   ++K
Sbjct: 371 LQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAGMPEKCIILYK 430

Query: 181 SLMHSKEKPTLPTFNSMI 198
           +++ S  KP L  +  M+
Sbjct: 431 AMVGSGLKPELSVYAIMV 448



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 17/186 (9%)

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           +   LLID      AFD    V  S MH           ++I +YGK +L   AE VF+ 
Sbjct: 629 VAHELLIDCL---HAFD----VKDSAMHV----------AIIASYGKLKLWQNAEIVFRD 671

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           +    +  +   Y  +++ Y    N  RA    D +   G     +  N +LEA+   G 
Sbjct: 672 LQQHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNATCANYVLEAFGRAGK 731

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
             E    F+    MG++P+S T+ +++ A+++    E  + + ++M++ G  P+ + F  
Sbjct: 732 AKEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKA 791

Query: 337 ALETFS 342
            L  +S
Sbjct: 792 LLALYS 797



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 86/428 (20%), Positives = 153/428 (35%), Gaps = 95/428 (22%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL---------HT- 59
           D+  ++ LI  +GK G    A  +F +M  S  RP    ++A+I A+          HT 
Sbjct: 335 DSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFTDAEHTY 394

Query: 60  --------RDKAKALAKALGYFQKMKGMERC------------KPNIVTYNILLRACAQA 99
                   R    A +  L  F K    E+C            KP +  Y I++R   Q 
Sbjct: 395 SCMLRAGVRPDLLAYSVMLDVFFKAGMPEKCIILYKAMVGSGLKPELSVYAIMVRVFYQK 454

Query: 100 RNVDQVNALFKELHESI------------------------------LAPDIYTYNGVMD 129
            +V ++  L KE+ +S                               +A  + T N V+ 
Sbjct: 455 SSVAEIENLSKEMVQSSASLAALSSTLAKGGFYAEAAVVLKISFAQGVAVKVETLNDVLG 514

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A+  +G + +   ++  + S +       +  L     K   F + E+  ++     +  
Sbjct: 515 AFEASGKLSDARDLVHAVSSIEPSVAAHLYKRLAVMLAKAGRFSEAEEEMRTSQTYGQVQ 574

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMT--------------AMKYTP---SFITYE-- 230
                  ++ +Y +A +Q +A   F  MT               M Y     +F+ +E  
Sbjct: 575 VSDFLKVLVASYDRAGMQDEALARFLDMTTEGLEMDAEVLQTAVMCYCRKGFAFVAHELL 634

Query: 231 ----------------CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
                            II  YG       A  +F +L + G     S  +A+L AY   
Sbjct: 635 IDCLHAFDVKDSAMHVAIIASYGKLKLWQNAEIVFRDLQQHGFAGNTSAYSALLSAYAET 694

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           G    A    +N    G+ P+++    + +A+ +A   + + +  +R+ + GI PN R F
Sbjct: 695 GNFERATRALDNMVAAGLQPNATCANYVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTF 754

Query: 335 LEALETFS 342
           +     FS
Sbjct: 755 VVIFHAFS 762


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 147/346 (42%), Gaps = 47/346 (13%)

Query: 26  QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALGYFQKMKGMERCK 83
           + R  + +  + ++S C PD   YN +I    +    DKA +L   +G            
Sbjct: 173 EARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEMGV----------S 222

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P++VTYN ++    +A+ VD+   +F+++ E  + P+  TYN ++D   K   +   E V
Sbjct: 223 PDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGV 282

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
             +M     KP  +T+N +ID   K QA D+ E VF+ ++    KP   T+N++I    K
Sbjct: 283 FQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCK 342

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A+   KAE VFQ+M      P  +TY  II       +V RA  +F ++   G      T
Sbjct: 343 AQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGT 402

Query: 264 LNAMLEAY-----------------------------------CMNGLPTEADLLFENSH 288
            N ++  Y                                   C NG   EA  LF++  
Sbjct: 403 YNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMI 462

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
             G+ P  + Y ++   Y K      +  LL  M  NGI PN R F
Sbjct: 463 RKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIF 508



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 154/323 (47%), Gaps = 9/323 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + K      A  +F +M + G +PD   YN +I        KA+A+ KA G F
Sbjct: 298 YNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLC----KAQAIDKAEGVF 353

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           Q+M  KG+   KP+ +TY I++    +A++VD+   +F+++ +  + P+  TYN ++  Y
Sbjct: 354 QQMIDKGV---KPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGY 410

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
              G  +E+   +  M ++  +PD+ T+ LL+D   K    ++   +F S++    KP++
Sbjct: 411 LSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSV 470

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             +  M+  YGK     +   +   M A   +P+   +  +I  Y     +     IF +
Sbjct: 471 TIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIK 530

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G    V T   +++A C  G   +A L F    N GVTP++  +  L       + 
Sbjct: 531 MKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDK 590

Query: 312 KELVQKLLKRMEQNGIVPNKRFF 334
            E V++L   M   GI P+  FF
Sbjct: 591 WEKVEELFLEMLNQGIRPDIVFF 613



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 143/318 (44%), Gaps = 5/318 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           I++ +I    K+      M +F +M+  G  P+   Y  LI A      K   +  A+  
Sbjct: 507 IFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALC----KLGRVDDAVLQ 562

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F +M   E   PN V +N L+         ++V  LF E+    + PDI  +N V+    
Sbjct: 563 FNQMIN-EGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLC 621

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G + E   ++  M     KPD+I++N LID +      D+  ++   ++ +  KP + 
Sbjct: 622 KEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIV 681

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           ++N+++  Y KA     A  +F++M     TP   TY  I+         S ARE++  +
Sbjct: 682 SYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNM 741

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            K  K   + T + +L+ +C N    EA  +F++  +M +  D  T+ ++     K   K
Sbjct: 742 IKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRK 801

Query: 313 ELVQKLLKRMEQNGIVPN 330
           E    L   +  NG+VP+
Sbjct: 802 EDAMDLFAAIPANGLVPS 819



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 143/325 (44%), Gaps = 13/325 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I  + K      A  +F +M + G +P+   YN LI  +L T    + +   
Sbjct: 364 DNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVV--- 420

Query: 70  LGYFQKMKGM--ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
               Q++K M     +P++ TY +LL    +    ++  +LF  +    + P +  Y  +
Sbjct: 421 ----QRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIM 476

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  YGK G + EM  +L+ M +N   P+   FN +I +Y KR   D++  +F  +     
Sbjct: 477 LHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGL 536

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRA 245
            P + T+ ++I    K      A   F +M     TP+ + +  ++  YG C  D   + 
Sbjct: 537 SPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLV--YGLCTVDKWEKV 594

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            E+F E+   G    +   N +L   C  G   EA  L ++   MG+ PD  +Y  L   
Sbjct: 595 EELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDG 654

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
           +  A+  +   KLL  M   G+ PN
Sbjct: 655 HCFASRMDEAVKLLDGMVSAGLKPN 679



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 152/335 (45%), Gaps = 11/335 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ+    +   Y  LI  + K G+   A+  F++M N G  P+  V+N+L+   L T DK
Sbjct: 532 KQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYG-LCTVDK 590

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYN-ILLRACAQARNVDQVNALFKELHESILAPDI 121
            + + +    F +M   +  +P+IV +N +L   C + R V +   L   +    L PD+
Sbjct: 591 WEKVEE---LFLEMLN-QGIRPDIVFFNTVLCNLCKEGR-VMEARRLIDSMVCMGLKPDV 645

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            +YN ++D +     + E   +L  M S   KP+I+++N L+  Y K    D    +F+ 
Sbjct: 646 ISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFRE 705

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++     P + T+N+++    ++    +A  ++  M   +   S  TY   I + G+C N
Sbjct: 706 MLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYS--IILDGFCKN 763

Query: 242 --VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
                A +IF  L  +   + + T N M++     G   +A  LF      G+ P   TY
Sbjct: 764 NCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTY 823

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           +L+ +   +    E +  L   ME++G  PN    
Sbjct: 824 RLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHML 858



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 140/315 (44%), Gaps = 9/315 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  L+  + K G+   A  LF  M   G +P  ++Y  +    LH   K  AL++ 
Sbjct: 434 DVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIM----LHGYGKKGALSEM 489

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                 M       PN   +N ++ A A+   +D+V  +F ++ +  L+P++ TY  ++D
Sbjct: 490 HDLLNLMVA-NGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLID 548

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A  K G + +     ++M +    P+ + FN L+        ++K+E++F  +++   +P
Sbjct: 549 ALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRP 608

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  FN+++ N  K     +A  +   M  M   P  I+Y  +I  + +   +  A ++ 
Sbjct: 609 DIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLL 668

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL----LYKA 305
           D +   G    + + N +L  YC  G    A  LF      GVTP   TY      L+++
Sbjct: 669 DGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRS 728

Query: 306 YTKANMKELVQKLLK 320
              +  +EL   ++K
Sbjct: 729 GRFSEARELYVNMIK 743



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/248 (18%), Positives = 103/248 (41%), Gaps = 1/248 (0%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE-MES 142
           P+  TY+I++    +   ++   A F  + ++    D    N ++        + E M  
Sbjct: 82  PDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHV 141

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +L +M    C+  ++++N L+     R+  ++  ++   ++  ++    P   S  I   
Sbjct: 142 LLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVIN 201

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
               +G+ +  +     M  +P  +TY  II        V RA ++F ++ + G      
Sbjct: 202 GFFNEGQVDKAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNV 261

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T N +++  C       A+ +F+   + GV P + TY  +     KA   +  + + ++M
Sbjct: 262 TYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQM 321

Query: 323 EQNGIVPN 330
              G+ P+
Sbjct: 322 IDRGVKPD 329



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 84/185 (45%), Gaps = 5/185 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+    K G+   A  LF EM   G  P    YN ++      R    + A+ L Y 
Sbjct: 683 YNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLF--RSGRFSEAREL-YV 739

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             +K   R   +I TY+I+L    +    D+   +F+ L    L  DI T+N ++D   K
Sbjct: 740 NMIK--SRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFK 797

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G  ++   + + + +N   P ++T+ L+ ++  +  + ++++ +F  +  S   P    
Sbjct: 798 GGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHM 857

Query: 194 FNSMI 198
            N++I
Sbjct: 858 LNALI 862


>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1508

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 154/328 (46%), Gaps = 4/328 (1%)

Query: 8   IADT-GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           IADT  +Y+ ++ V  + G       +F+ MR  GC PD   +N LI A + +      L
Sbjct: 260 IADTVQVYNAMMGVYARNGNFEKVNEMFNLMRERGCEPDIVSFNTLINAKVKSCATVSGL 319

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A  L       G    +P+I+TYN L+ AC++  N+ +   +F  +  +   PD++TYN 
Sbjct: 320 AIEL---LDEVGKFGLRPDIITYNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTYNA 376

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  YG+ G   + E +  ++KSN   PD +T+N L+ ++ K    +K+  + + ++   
Sbjct: 377 MISVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMG 436

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
                 T+N++I  YGK     +A  +++ M +    P  +TY  +I + G    +  A 
Sbjct: 437 FGKDEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEAS 496

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           ++  E+   G    + T +A++ AY   G   EA+  F      G+  D   Y ++   +
Sbjct: 497 KVMSEMLDAGVKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFF 556

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFF 334
            + N  +    L + M + G  P+   +
Sbjct: 557 LRFNEIKKAAALYQEMIEAGFTPDTGLY 584



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 159/334 (47%), Gaps = 24/334 (7%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           Q+WY  +  + + +++V+GK  Q  +A+ +F++   S       VYNA++  +       
Sbjct: 223 QQWYATNARMVATILSVLGKANQEGIAVEIFAKAE-SVIADTVQVYNAMMGVYARN---- 277

Query: 64  KALAKALGYFQKMKGM-----ER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESI- 116
                  G F+K+  M     ER C+P+IV++N L+ A  + ++   V+ L  EL + + 
Sbjct: 278 -------GNFEKVNEMFNLMRERGCEPDIVSFNTLINA--KVKSCATVSGLAIELLDEVG 328

Query: 117 ---LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
              L PDI TYN ++ A  +   +KE   V S M+SN+C+PD+ T+N +I  YG+     
Sbjct: 329 KFGLRPDIITYNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAMISVYGRCGFAL 388

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           K E +F+ L  +   P   T+NS++  + K     K   + ++M  M +    +TY  II
Sbjct: 389 KAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTII 448

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
            MYG       A  ++ ++   G++    T   +++         EA  +     + GV 
Sbjct: 449 HMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVK 508

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           P   TY  L  AY K   +   ++   RM ++GI
Sbjct: 509 PTLHTYSALICAYAKVGRRVEAEETFNRMRESGI 542



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 140/298 (46%), Gaps = 5/298 (1%)

Query: 29  LAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88
           LA+ L  E+   G RPD   YN LI+A      +   L +A+G F  M+   RC+P++ T
Sbjct: 319 LAIELLDEVGKFGLRPDIITYNTLISAC----SRESNLKEAIGVFSHMES-NRCQPDLWT 373

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN ++    +     +   LF++L  +  +PD  TYN ++ A+ K G  +++  +   M 
Sbjct: 374 YNAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMV 433

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
                 D +T+N +I  YGK    D+  ++++ +  S   P   T+  +I   GKA    
Sbjct: 434 KMGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIE 493

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           +A  V  +M      P+  TY  +I  Y        A E F+ + + G        + ML
Sbjct: 494 EASKVMSEMLDAGVKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVML 553

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           + +       +A  L++     G TPD+  Y+++  A  + NM ++++++++  ++ G
Sbjct: 554 DFFLRFNEIKKAAALYQEMIEAGFTPDTGLYEVMLPALVRENMGDVIERVVQDTKELG 611



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 145/326 (44%), Gaps = 5/326 (1%)

Query: 3    KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
            +QR    D  +++ LI      G    A  +F+ M   G  P     N L+ A L    +
Sbjct: 816  RQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMREGPSPTVESVNGLLQA-LIVDGR 874

Query: 63   AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
               L   +   Q M  ++  K +I+   ++L A AQA N+ +V  ++  +  +   P ++
Sbjct: 875  LSELYVVIQELQDMD-LKISKSSIL---LMLEAFAQAGNLFEVQKVYNGMKAAGYFPTMH 930

Query: 123  TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
             Y  ++    +   ++++  +LS M     KPD+  FN ++  Y   + F  M  +++ +
Sbjct: 931  LYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQNMGVIYQMI 990

Query: 183  MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
              +   P   T+N++I  Y +     +   +  KM ++   P   TY  +I  +      
Sbjct: 991  QDAGLAPDEETYNTLITMYCRDHRPEEGLSLMHKMKSLGLEPKRDTYRSMIAAFSKQQLY 1050

Query: 243  SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             +A E+F+EL   G  +  S  + M++ Y  +G   +A+ L E     G+ P+++T  LL
Sbjct: 1051 DQAEELFEELRSNGYKLDRSFYHLMMKMYRTSGDHQKAENLLEIMKEAGIEPNTATMHLL 1110

Query: 303  YKAYTKANMKELVQKLLKRMEQNGIV 328
              +Y K+   E   ++LK +   G V
Sbjct: 1111 MVSYGKSGQPEEADRILKNLRTMGAV 1136



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 125/272 (45%), Gaps = 20/272 (7%)

Query: 68   KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            KA GYF          P +  Y +++    + + V  V  +  E+ E+   PD+  +N V
Sbjct: 921  KAAGYF----------PTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPDLQIFNSV 970

Query: 128  MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
            +  Y      + M  +   ++     PD  T+N LI  Y +    D   +   SLMH  +
Sbjct: 971  LKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYCR----DHRPEEGLSLMHKMK 1026

Query: 188  ----KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                +P   T+ SMI  + K +L  +AE +F+++ +  Y      Y  ++ MY    +  
Sbjct: 1027 SLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMYRTSGDHQ 1086

Query: 244  RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            +A  + + + + G +   +T++ ++ +Y  +G P EAD + +N   MG   D+  Y  + 
Sbjct: 1087 KAENLLEIMKEAGIEPNTATMHLLMVSYGKSGQPEEADRILKNLRTMGAVLDTLPYSSVI 1146

Query: 304  KAY-TKANMKELVQKLLKRMEQNGIVPNKRFF 334
             AY  K + K  ++KL + M++  I P+ R +
Sbjct: 1147 DAYLKKGDAKAGIEKLTE-MKEAAIEPDHRIW 1177



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/355 (18%), Positives = 146/355 (41%), Gaps = 34/355 (9%)

Query: 13   IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH---------------- 56
            +Y  LI    K  Q  +A  LFS+MR +G  P   +Y ++++ +                
Sbjct: 719  MYESLIHECTKSEQFDIASQLFSDMRFNGVEPSECLYQSMVSVYCRIGFPETAQHLLYHA 778

Query: 57   -----------LHTRDKAKALAKALGYFQKMKGM-----ERC-KPNIVTYNILLRACAQA 99
                       +H  D  +   K L  +Q  + +     +RC K +   +N L+ A A +
Sbjct: 779  EKNDIILDNVTVHIIDIIETYGK-LKMWQSAESIVENLRQRCSKMDRKVWNALIHAYAFS 837

Query: 100  RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
               ++  A+F  +     +P + + NG++ A   +G + E+  V+  ++    K    + 
Sbjct: 838  GCYERARAIFNTMMREGPSPTVESVNGLLQALIVDGRLSELYVVIQELQDMDLKISKSSI 897

Query: 160  NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
             L+++++ +     ++++V+  +  +   PT+  +  MI    + +       +  +M  
Sbjct: 898  LLMLEAFAQAGNLFEVQKVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGE 957

Query: 220  MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
              + P    +  ++ +Y   +       I+  +   G      T N ++  YC +  P E
Sbjct: 958  AGFKPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDHRPEE 1017

Query: 280  ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
               L     ++G+ P   TY+ +  A++K  + +  ++L + +  NG   ++ F+
Sbjct: 1018 GLSLMHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFY 1072



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 96/213 (45%), Gaps = 5/213 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K   +  D   Y+ L+    K+G T     +  EM   G   D   YN +I    H   K
Sbjct: 398 KSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTII----HMYGK 453

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
                +AL  ++ MK   R  P+ VTY +L+    +A  +++ + +  E+ ++ + P ++
Sbjct: 454 HGRHDEALRLYRDMKSSGR-NPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLH 512

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY+ ++ AY K G   E E   +RM+ +  K D + +++++D + +     K   +++ +
Sbjct: 513 TYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAALYQEM 572

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
           + +   P    +  M+    +  +    E V Q
Sbjct: 573 IEAGFTPDTGLYEVMLPALVRENMGDVIERVVQ 605



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/386 (19%), Positives = 153/386 (39%), Gaps = 67/386 (17%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH------------- 56
           D   Y+ +I+V G+ G    A  LF +++++G  PD   YN+L+ A              
Sbjct: 370 DLWTYNAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDIS 429

Query: 57  ------------------LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
                             +H   K     +AL  ++ MK   R  P+ VTY +L+    +
Sbjct: 430 EEMVKMGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGR-NPDAVTYTVLIDLLGK 488

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
           A  +++ + +  E+ ++ + P ++TY+ ++ AY K G   E E   +RM+ +  K D + 
Sbjct: 489 ASKIEEASKVMSEMLDAGVKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLA 548

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +++++D + +     K   +++ ++ +   P    +  M+    +  +    E V Q   
Sbjct: 549 YSVMLDFFLRFNEIKKAAALYQEMIEAGFTPDTGLYEVMLPALVRENMGDVIERVVQDTK 608

Query: 219 AM-KYTPSFITYECIITMYGYCDNVSRA------------REIF---------------- 249
            +    P  I+   ++   G  D+ ++             REIF                
Sbjct: 609 ELGSMNPHDIS--SVLVKGGCYDHGAKMLKVAISNGYELDREIFLSIMSSYSSSARYSEA 666

Query: 250 DELSKLGKDMKVSTLNAMLEAY----CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            EL +  ++     +  + EA     C  G    A   + +   +G     + Y+ L   
Sbjct: 667 CELVEFFREHAPDDIQMITEALIIILCKAGKLDAALEEYRSRGGLGTFRSCTMYESLIHE 726

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNK 331
            TK+   ++  +L   M  NG+ P++
Sbjct: 727 CTKSEQFDIASQLFSDMRFNGVEPSE 752



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/284 (20%), Positives = 118/284 (41%), Gaps = 3/284 (1%)

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           KA  L  AL  ++   G+   + +   Y  L+  C ++   D  + LF ++  + + P  
Sbjct: 694 KAGKLDAALEEYRSRGGLGTFR-SCTMYESLIHECTKSEQFDIASQLFSDMRFNGVEPSE 752

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL--IDSYGKRQAFDKMEQVF 179
             Y  ++  Y + G  +  + +L   + N    D +T +++  I++YGK + +   E + 
Sbjct: 753 CLYQSMVSVYCRIGFPETAQHLLYHAEKNDIILDNVTVHIIDIIETYGKLKMWQSAESIV 812

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           ++L     K     +N++I  Y  +    +A  +F  M     +P+  +   ++      
Sbjct: 813 ENLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMREGPSPTVESVNGLLQALIVD 872

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             +S    +  EL  +   +  S++  MLEA+   G   E   ++      G  P    Y
Sbjct: 873 GRLSELYVVIQELQDMDLKISKSSILLMLEAFAQAGNLFEVQKVYNGMKAAGYFPTMHLY 932

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
           +L+     +      V+ +L  M + G  P+ + F   L+ +SS
Sbjct: 933 RLMIGLLCRFKRVRDVRVMLSEMGEAGFKPDLQIFNSVLKLYSS 976



 Score = 43.1 bits (100), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 2/155 (1%)

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM-YGYCDNVSR-ARE 247
           T+  +N+M+  Y +     K   +F  M      P  +++  +I      C  VS  A E
Sbjct: 263 TVQVYNAMMGVYARNGNFEKVNEMFNLMRERGCEPDIVSFNTLINAKVKSCATVSGLAIE 322

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + DE+ K G    + T N ++ A        EA  +F +  +    PD  TY  +   Y 
Sbjct: 323 LLDEVGKFGLRPDIITYNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAMISVYG 382

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           +       + L ++++ NG  P+   +   L  FS
Sbjct: 383 RCGFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFS 417


>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
          Length = 784

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 149/314 (47%), Gaps = 11/314 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+     D   Y+ LI+   ++   + A  +F EM+ SG  PD   +N+L+  +   R  
Sbjct: 235 KEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRH 294

Query: 63  AKALAKALGYFQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +A+       + ++ MER  C P++VTYN L+ +  +   ++Q  AL +E+    + PD
Sbjct: 295 DEAI-------EVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPD 347

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TY  ++    + G I         M  N CKP++ T+N LI  +G R  F +M  VF 
Sbjct: 348 VVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFD 407

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            L  +   P + T+N+++  +G+  L  +   VF++M    Y P   TY  +I+ Y  C 
Sbjct: 408 ELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCG 467

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
               A +I+  + + G    VST NA+L A    G   +A+ LF         PD  +Y 
Sbjct: 468 LFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYS 527

Query: 301 LLYKAYTKANMKEL 314
            L  AY  AN K L
Sbjct: 528 SLLHAY--ANAKRL 539



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 143/321 (44%), Gaps = 4/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D G Y+ L++   + G+ R A+ +F  M +SG +P    YN +    LH   K     K 
Sbjct: 171 DAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVV----LHVYSKMAVPWKE 226

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +             P+  TYN L+  C +     +   +F E+  S   PD  T+N ++D
Sbjct: 227 VVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLD 286

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK     E   V+  M+   C P ++T+N LI SY K    ++   + + +     KP
Sbjct: 287 VYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKP 346

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ ++I    +A     A   + +M      P+  TY  +I M+G          +F
Sbjct: 347 DVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVF 406

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DEL   G    + T N +L  +  NGL +E   +F+     G  P+  TY  L  +Y++ 
Sbjct: 407 DELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRC 466

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
            + +L  ++ KRM + GI P+
Sbjct: 467 GLFDLAMQIYKRMMEAGIYPD 487



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 159/402 (39%), Gaps = 75/402 (18%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+ + + G+   A+  + EM  +GC+P+   YNALI  H   R K     + 
Sbjct: 347 DVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMH-GVRGK---FPEM 402

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH---------------- 113
           +  F +++      P+IVT+N LL    Q     +V+ +FKE+                 
Sbjct: 403 MAVFDELRSAGFV-PDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLIS 461

Query: 114 -------------------ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
                              E+ + PD+ TYN V+ A  + G  ++ E + + M+   CKP
Sbjct: 462 SYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKP 521

Query: 155 DIITFNLLIDSYGKRQAFDKM-----------------------------------EQVF 179
           D  +++ L+ +Y   +  DKM                                   E+ F
Sbjct: 522 DEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAF 581

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             L   +    +   N+M+  YGK R+  K E +   M       S  TY  ++ MY   
Sbjct: 582 LELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRL 641

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            +  +   I  E+   G      + N ++ AY   G   EA  LF      G+ PD  TY
Sbjct: 642 GDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTY 701

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            +  K+Y   +M E   +L++ M   G  PN+R +   +E +
Sbjct: 702 NIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGY 743



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 130/279 (46%), Gaps = 9/279 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALA 67
           D   Y+ +++ + + G+   A  LF+EM    C+PD   Y++L+ A+ + +  DK KAL+
Sbjct: 487 DVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALS 546

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
             +         ER +P+      L+   ++  N+ +    F EL +   + DI   N +
Sbjct: 547 DDIY-------SERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAM 599

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  YGKN M++++E +LS MK +       T+N L+  Y +    +K E +   +  S  
Sbjct: 600 VSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGV 659

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P   ++N++I  YG+     +A  +F +M      P  +TY   +  Y        A E
Sbjct: 660 RPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIE 719

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           +   +   G      T N+++E YC NG  T+A +   N
Sbjct: 720 LVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSN 758



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 161/392 (41%), Gaps = 75/392 (19%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ L+ V GK  +   A+ +  EM   GC P    YN+LI++++  +D     A A
Sbjct: 277 DKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYV--KDGLLEQAVA 334

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVD-------------------------- 103
           L    ++KG+   KP++VTY  L+    +A  +D                          
Sbjct: 335 LKQEMEVKGI---KPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIK 391

Query: 104 ---------QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
                    ++ A+F EL  +   PDI T+N ++  +G+NG+  E+  V   MK     P
Sbjct: 392 MHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIP 451

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           +  T+  LI SY +   FD   Q++K +M +   P + T+N+++    +     +AE +F
Sbjct: 452 ERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLF 511

Query: 215 QKMTAMKYTPSFITYECIITMYG-----------------------------------YC 239
            +M      P   +Y  ++  Y                                      
Sbjct: 512 AEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKV 571

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           +N++ A + F EL +    + ++ LNAM+  Y  N +  + + +        +   ++TY
Sbjct: 572 NNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATY 631

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             L   Y++    E  + +L  ++ +G+ P++
Sbjct: 632 NSLMHMYSRLGDCEKCENILTEIKSSGVRPDR 663


>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Glycine max]
          Length = 1476

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 162/335 (48%), Gaps = 14/335 (4%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKG--QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH 58
           + ++R  + D   ++ LI    K G  +  LA+ L +E+R SG RPD   YN LI+A   
Sbjct: 274 LMRERGCVPDLVSFNTLINARMKSGAMEPNLALQLLNEVRRSGIRPDIITYNTLISAC-- 331

Query: 59  TRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA---CAQARNVDQVNALFKELHES 115
              +   L +A+  F  M+   RC+P++ TYN ++     CA+AR  ++   LFKEL   
Sbjct: 332 --SRESNLEEAVAVFSDMES-HRCQPDLWTYNAMISVYGRCARARKAEE---LFKELESK 385

Query: 116 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 175
              PD  TYN ++ A+ + G  +++  +   M       D +T+N +I  YGK+   D+ 
Sbjct: 386 GFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQA 445

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
            Q+++ +  S   P   T+  +I + GKA    +A  V  +M      P+  TY  +I  
Sbjct: 446 MQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALICA 505

Query: 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           Y        A E F+ + + G        + ML+ +       +A  L+      G TPD
Sbjct: 506 YAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIREGFTPD 565

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQ-NGIVP 329
           +  Y+++  A  + NM ++V ++++ ME+ +G+ P
Sbjct: 566 NGLYEVMMHALVRENMWDVVDRIIRDMEELSGMNP 600



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 152/328 (46%), Gaps = 4/328 (1%)

Query: 8   IADT-GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           + DT  +Y+ ++ V  + G+      L   MR  GC PD   +N LI A + +      L
Sbjct: 245 VGDTVQVYNAMMGVYARNGRFSKVKELLDLMRERGCVPDLVSFNTLINARMKSGAMEPNL 304

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A  L    +  G+   +P+I+TYN L+ AC++  N+++  A+F ++      PD++TYN 
Sbjct: 305 ALQLLNEVRRSGI---RPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNA 361

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  YG+    ++ E +   ++S    PD +T+N L+ ++ +    +K+  + + ++   
Sbjct: 362 MISVYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRG 421

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
                 T+N++I  YGK     +A  +++ M +    P  +TY  +I   G    V  A 
Sbjct: 422 FGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAA 481

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G    + T +A++ AY   G   EA+  F      G+ PD   Y ++   +
Sbjct: 482 NVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFF 541

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFF 334
            + N  +    L   M + G  P+   +
Sbjct: 542 LRFNEMKKAMGLYHEMIREGFTPDNGLY 569



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 167/340 (49%), Gaps = 8/340 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           + WY  +  + + ++ V+GK  Q  LA+ +F+   +S       VYNA++   ++ R+  
Sbjct: 208 RHWYAPNARMVATILGVLGKANQEALAVEIFARAESS-VGDTVQVYNAMMG--VYARNGR 264

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL--FKELHESILAPDI 121
            +  K L    + +G   C P++V++N L+ A  ++  ++   AL    E+  S + PDI
Sbjct: 265 FSKVKELLDLMRERG---CVPDLVSFNTLINARMKSGAMEPNLALQLLNEVRRSGIRPDI 321

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TYN ++ A  +   ++E  +V S M+S++C+PD+ T+N +I  YG+     K E++FK 
Sbjct: 322 ITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKE 381

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           L      P   T+NS++  + +     K   + ++M    +    +TY  II MYG    
Sbjct: 382 LESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGR 441

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
             +A +I+ ++   G++    T   ++++        EA  +     + GV P   TY  
Sbjct: 442 HDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSA 501

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           L  AY KA  +E  ++    M ++GI P++  +   L+ F
Sbjct: 502 LICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFF 541



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 149/326 (45%), Gaps = 5/326 (1%)

Query: 3    KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
            +QR    D  +++ LI      G    A  +F+ M   G  P     N L+ A +  R +
Sbjct: 801  RQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMRDGPSPTVDSVNGLLQALIVDR-R 859

Query: 63   AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
               L   +   Q M G++  K +I+   + L A AQA N+ +V  ++  +  +   P ++
Sbjct: 860  LNELYVVIQELQDM-GLKISKSSIL---LTLEAFAQAGNLFEVQKIYNGMKAAGYFPTMH 915

Query: 123  TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
             Y  ++    K   ++++E++L  M+    +PD+   N ++  Y   + F  M  +++ +
Sbjct: 916  VYRIMLRLLCKCKRVRDVETMLCEMEEAGFQPDLQICNSILKLYLGIEDFKSMGIIYQKI 975

Query: 183  MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
              +  KP   T+N++II Y + R   +   +  KM ++   P   TY  +IT +      
Sbjct: 976  QDASLKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEPKLDTYRSLITAFNKQRMY 1035

Query: 243  SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             +A E+F+EL   G  +  +  + M++ Y  +G   +A+ L       G+ P  ST  LL
Sbjct: 1036 EQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKESGIEPTISTMHLL 1095

Query: 303  YKAYTKANMKELVQKLLKRMEQNGIV 328
              +Y K+   E  + +LK +   G+V
Sbjct: 1096 MVSYGKSGQPEEAENVLKNLRTTGVV 1121



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 7    YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
            Y     +Y  ++ ++ K  + R    +  EM  +G +PD  + N+++  +L   D     
Sbjct: 910  YFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGFQPDLQICNSILKLYLGIED----- 964

Query: 67   AKALGY-FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
             K++G  +QK++     KP+  TYN L+    + R  ++  +L  ++    L P + TY 
Sbjct: 965  FKSMGIIYQKIQDAS-LKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEPKLDTYR 1023

Query: 126  GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
             ++ A+ K  M ++ E +   ++SN  K D   ++L++ +Y       K E +   +  S
Sbjct: 1024 SLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKES 1083

Query: 186  KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
              +PT+ T + ++++YGK+    +AE V + +         + Y  +I  Y
Sbjct: 1084 GIEPTISTMHLLMVSYGKSGQPEEAENVLKNLRTTGVVLDTLPYSSVIDAY 1134



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/302 (19%), Positives = 131/302 (43%), Gaps = 9/302 (2%)

Query: 45   DPSVYNALITAH--LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
            D SVY  ++  +  L    KA++L  +L   Q+   M+R       +N L+ A A +   
Sbjct: 773  DISVYIDIVETYGKLKIWQKAESLVGSLR--QRCSKMDR-----KVWNALIHAYAFSGCY 825

Query: 103  DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
            ++  A+F  +     +P + + NG++ A   +  + E+  V+  ++    K    +  L 
Sbjct: 826  ERARAIFNTMMRDGPSPTVDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSILLT 885

Query: 163  IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
            ++++ +     ++++++  +  +   PT+  +  M+    K +     E +  +M    +
Sbjct: 886  LEAFAQAGNLFEVQKIYNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGF 945

Query: 223  TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
             P       I+ +Y   ++      I+ ++          T N ++  YC +  P E   
Sbjct: 946  QPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFS 1005

Query: 283  LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            L     ++G+ P   TY+ L  A+ K  M E  ++L + +  NG   ++ F+   ++T+ 
Sbjct: 1006 LMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYR 1065

Query: 343  SS 344
            +S
Sbjct: 1066 TS 1067



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/253 (20%), Positives = 116/253 (45%), Gaps = 37/253 (14%)

Query: 83   KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
            +P++   N +L+      +   +  +++++ ++ L PD  TYN ++  Y ++   +E  S
Sbjct: 946  QPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFS 1005

Query: 143  VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
            ++++M+S   +P + T+  LI ++ K++ +++ E++F+ L  +  K     ++ M+  Y 
Sbjct: 1006 LMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYR 1065

Query: 203  KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
             +    KAE +   M      P+                                    S
Sbjct: 1066 TSGDHRKAENLLAIMKESGIEPTI-----------------------------------S 1090

Query: 263  TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKR 321
            T++ ++ +Y  +G P EA+ + +N    GV  D+  Y  +  AY  K + K  ++KL + 
Sbjct: 1091 TMHLLMVSYGKSGQPEEAENVLKNLRTTGVVLDTLPYSSVIDAYLKKGDFKAGIEKLTE- 1149

Query: 322  MEQNGIVPNKRFF 334
            M++ GI P+ R +
Sbjct: 1150 MKEAGIEPDHRIW 1162



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 76/388 (19%), Positives = 160/388 (41%), Gaps = 50/388 (12%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R +  D   Y+ +I + GK+G+   AM ++ +M++SG  PD   Y  LI     +  KA
Sbjct: 419 KRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLI----DSLGKA 474

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             + +A     +M      KP + TY+ L+ A A+A   ++    F  +  S + PD   
Sbjct: 475 SKVEEAANVMSEMLDAG-VKPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLA 533

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ ++D + +   +K+   +   M      PD   + +++ +  +   +D ++++ + + 
Sbjct: 534 YSVMLDFFLRFNEMKKAMGLYHEMIREGFTPDNGLYEVMMHALVRENMWDVVDRIIRDME 593

Query: 184 H-SKEKPTLPTFNSMIINYG---------KARLQGKAEY---VFQKMT------------ 218
             S   P +   +S+++  G         K  +    E    +F  +             
Sbjct: 594 ELSGMNPQV--ISSVLVKGGCYDHAAKMLKVAISNGYELDHEIFLSIMSSYSSSARYSEA 651

Query: 219 ------AMKYTPSFITY--ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
                 + ++ P+ I    E +I +      +  A E +    +LG+    +   ++++ 
Sbjct: 652 CELLEFSREHAPNDIQMITEALIIILCKAKKLDAALEEYRSKGELGQFRSCTMYESLIQE 711

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              N L   A  +F +    GV      Y+ +   Y + ++ E    LL   E+NGI+ +
Sbjct: 712 CIQNELFDVASQIFSDMRFNGVESSECLYQGMVSVYCRMDLPETAHHLLYHAEKNGIILD 771

Query: 331 KRF--FLEALETF--------SSSLAGS 348
                +++ +ET+        + SL GS
Sbjct: 772 NDISVYIDIVETYGKLKIWQKAESLVGS 799


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 149/322 (46%), Gaps = 6/322 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+    K+ + + AM LF  M   G  PD   Y+ +I+    T    +AL      F
Sbjct: 81  YNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEM---LF 137

Query: 74  QKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            KM  +ER C  N V YN L+    +  N+++   L +E+      PD  TYN ++    
Sbjct: 138 HKM--IERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLC 195

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + G + E +     M S    PD++ +N L+D+  K    D+  ++FK ++     P   
Sbjct: 196 RMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTV 255

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+NS+++   +     +AE +F+KM A    P+  TY  +++ +     V  A ++ +E+
Sbjct: 256 TYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEM 315

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           SK+G    V T N +L+  C   L  +A  LF    + G  PD  +Y ++     K N  
Sbjct: 316 SKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKV 375

Query: 313 ELVQKLLKRMEQNGIVPNKRFF 334
              + L  RM +  +VP+   F
Sbjct: 376 HDARVLFDRMIERKLVPDVVTF 397



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 151/332 (45%), Gaps = 14/332 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAM-WLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++ +  D   YS +I+ + K G+   A+  LF +M   GC  +   YNALI        K
Sbjct: 106 EKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLC----K 161

Query: 63  AKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            + + +A    ++M  KG     P+ +TYN +L    +   V +    F  +     +PD
Sbjct: 162 DENIERAYKLLEEMASKGY---VPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPD 218

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           +  YNG++DA  K G   E   +   + +    PD +T+N ++    ++   D+ E++FK
Sbjct: 219 VVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFK 278

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++ S   P   T++ ++  + +A+    A  V ++M+ +   P  +TY   I + G C 
Sbjct: 279 KMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYN--ILLDGLCK 336

Query: 241 N--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              V +A E+F  +   G    + + + +L   C      +A +LF+      + PD  T
Sbjct: 337 TNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVT 396

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + +L     KA   +  + LL +M  +G  P+
Sbjct: 397 FNILMDGLCKAGKLDEAKDLLDQMTCSGCAPD 428



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 138/327 (42%), Gaps = 5/327 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R   A+T  Y+ LI  + K      A  L  EM + G  PD   YN +++       + 
Sbjct: 142 ERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLC----RM 197

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             +++A  +F  M       P++V YN LL A  +    D+   LFK++      PD  T
Sbjct: 198 GKVSEAKQFFDSMPSRGY-SPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVT 256

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++    +   + E E +  +M ++ C P+  T+++++  + + +  D   +V + + 
Sbjct: 257 YNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMS 316

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                P + T+N ++    K  L  KA  +F  M      P  ++Y  ++      + V 
Sbjct: 317 KIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVH 376

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            AR +FD + +      V T N +++  C  G   EA  L +     G  PD   Y  L 
Sbjct: 377 DARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLM 436

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
               K        +L + M++ G + +
Sbjct: 437 NGLRKQGRHIQADRLTQAMKEKGFLSD 463



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 135/310 (43%), Gaps = 43/310 (13%)

Query: 23  KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82
           K+G+ R    LF +M ++G  PD   YN LI                 GY +K +     
Sbjct: 20  KQGKLRDGYKLFEQMLDNGISPDGIEYNILID----------------GYAKKGR----- 58

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
                              VD+ N L++E+    L P IYTYN +++A+ K   +KE   
Sbjct: 59  -------------------VDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAME 99

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKR-QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           +   M     +PD++T++ +I    K  +  + +E +F  ++          +N++I   
Sbjct: 100 LFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGL 159

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            K     +A  + ++M +  Y P  ITY  I++       VS A++ FD +   G    V
Sbjct: 160 CKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDV 219

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK-LLYKAYTKANMKELVQKLLK 320
              N +L+A    G   EA  LF++    G  PD+ TY  +L     K+NM E  +++ K
Sbjct: 220 VAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDE-AEEMFK 278

Query: 321 RMEQNGIVPN 330
           +M  +G  PN
Sbjct: 279 KMVASGCAPN 288



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 125/256 (48%), Gaps = 7/256 (2%)

Query: 79  MERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMI 137
           M  C PN  T+ ++L++ C Q +  D    LF+++ ++ ++PD   YN ++D Y K G +
Sbjct: 1   MRECSPNRYTFRVVLKSFCKQGKLRDGYK-LFEQMLDNGISPDGIEYNILIDGYAKKGRV 59

Query: 138 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 197
            E   +   M S   +P I T+N L++++ K     +  ++FK++     +P + T++++
Sbjct: 60  DEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTI 119

Query: 198 IINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSK 254
           I    K  ++    E +F KM     + + + Y  +I   G C  +N+ RA ++ +E++ 
Sbjct: 120 ISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALIN--GLCKDENIERAYKLLEEMAS 177

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
            G      T N +L   C  G  +EA   F++  + G +PD   Y  L  A  K    + 
Sbjct: 178 KGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDE 237

Query: 315 VQKLLKRMEQNGIVPN 330
             KL K +   G +P+
Sbjct: 238 AMKLFKDVIAKGYMPD 253


>gi|302769103|ref|XP_002967971.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
 gi|300164709|gb|EFJ31318.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
          Length = 1354

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 162/337 (48%), Gaps = 8/337 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK-ALAKALG 71
           +Y+ L++V  + G       L   M++ GCRPD   +N +I A   TR   +  LA +L 
Sbjct: 116 VYNSLMSVYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKAR--TRGGMQEGLASSLL 173

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
                 G+   +P+ +TYN L+ AC+    +     +F+E+      PDI+TYN ++  Y
Sbjct: 174 QDVYAAGL---RPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVY 230

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           G+ G ++   S+   M+     PD +T+N ++ ++ +    +++E++   +  ++     
Sbjct: 231 GRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDE 290

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+N+MI  YGKA +  KAE ++ +M      P  +T+  +I   G    V+ A  +F++
Sbjct: 291 ITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFED 350

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + K      +   +AM+ AY    + ++A+  +      GV PD   Y ++   + KA M
Sbjct: 351 MLKSQVRPTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAEM 410

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETF--SSSLA 346
            E    L K M  +G+ P    +   +  F   SSLA
Sbjct: 411 PEKCIILYKAMVGSGLKPELSVYAIMVRVFYQKSSLA 447



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 150/301 (49%), Gaps = 9/301 (2%)

Query: 26  QTRLAMWLFSEMRNSGCRPDPSVYNALITA-HLHTRDKAKALAKALGYFQKMKGMERCKP 84
           Q  LA  L  ++  +G RPD   YN LI+A  L+ R     L+ A+  F++M+  + C P
Sbjct: 165 QEGLASSLLQDVYAAGLRPDTITYNTLISACSLNNR-----LSDAILIFEEMQ-RQGCDP 218

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           +I TYN ++    +A  V+  +++F+ + E    PD  TYN V+ A+ ++G I+E+E + 
Sbjct: 219 DIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIR 278

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             M+  +C  D IT+N +I  YGK     K E+++  +      P   TF  +I   GKA
Sbjct: 279 GMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKA 338

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
               +A  +F+ M   +  P+   +  +I  Y   D  S A   +  + + G    +   
Sbjct: 339 GFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAY 398

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA-YTKANMKELVQKLLKRME 323
           + ML+ +    +P +  +L++     G+ P+ S Y ++ +  Y K+++ E ++ L K M 
Sbjct: 399 SVMLDVFFKAEMPEKCIILYKAMVGSGLKPELSVYAIMVRVFYQKSSLAE-IENLSKEMV 457

Query: 324 Q 324
           Q
Sbjct: 458 Q 458



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 155/323 (47%), Gaps = 5/323 (1%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D+ ++  +IA  GK    + A  +F +++  G   + S Y+AL++A+  T +  +A  
Sbjct: 632 VKDSAMHVAIIASYGKLKLWQNAEIVFRDLQRHGFAGNTSAYSALLSAYAETGNFERA-T 690

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +AL       G++   PN    N +L A  +A    +++  ++ L E  + P+  T+  +
Sbjct: 691 RALDNMVA-AGLQ---PNAACANYVLEAFGRAGKAKELSEFYQRLPEMGITPNSRTFVVI 746

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
             A+ +NG ++E  S+  +M+     P I  F  L+  Y +       E++ K +  +  
Sbjct: 747 FHAFSRNGNLEEARSMYRQMREAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGL 806

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +  +  +N MI  Y K     KA  VF+ M  +  +P   T+  +I +Y     V  A+ 
Sbjct: 807 ELDMDIYNHMISLYSKLGSYRKAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQA 866

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +  E+ K G    +ST   ++ AY       +A+L+F++    G  PD++ Y ++   Y 
Sbjct: 867 LLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYR 926

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           KA     +++++++M+ +G  P+
Sbjct: 927 KAGEHRKIEEVIEQMKADGFEPS 949



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 141/314 (44%), Gaps = 5/314 (1%)

Query: 23   KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82
            + G    A  ++ +MR +G  P   V+ AL+   L++R+  +  A+ L    K  G+E  
Sbjct: 752  RNGNLEEARSMYRQMREAGFSPSIQVFKALLA--LYSRETVEIDAEELVKDIKKAGLEL- 808

Query: 83   KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
              ++  YN ++   ++  +  +   +FK + E   +PD  T+N ++  Y +N M++E ++
Sbjct: 809  --DMDIYNHMISLYSKLGSYRKAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQA 866

Query: 143  VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
            +L  M      P+I T+  LI +YG+ QA++  E VFKS+  +  KP    +N MI  Y 
Sbjct: 867  LLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYR 926

Query: 203  KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
            KA    K E V ++M A  + PS  T   ++  YG      +A E+ + L ++G      
Sbjct: 927  KAGEHRKIEEVIEQMKADGFEPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDAI 986

Query: 263  TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
               +++ ++  N     A +      +  V P   T      A +          LLK +
Sbjct: 987  HYTSIINSHLNNKDYLSAVIWLRKMTDACVRPTHVTITCFVGAASVCERSSHALMLLKAL 1046

Query: 323  EQNGIVPNKRFFLE 336
             + G     R   E
Sbjct: 1047 SEAGFSLPLRLMTE 1060



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/324 (20%), Positives = 151/324 (46%), Gaps = 5/324 (1%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           +  +T  YS L++   + G    A      M  +G +P+ +  N ++ A      KAK L
Sbjct: 666 FAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNAACANYVLEA-FGRAGKAKEL 724

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           ++   ++Q++  M    PN  T+ ++  A ++  N+++  ++++++ E+  +P I  +  
Sbjct: 725 SE---FYQRLPEMG-ITPNSRTFVVIFHAFSRNGNLEEARSMYRQMREAGFSPSIQVFKA 780

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y +  +  + E ++  +K    + D+  +N +I  Y K  ++ K   VFK +    
Sbjct: 781 LLALYSRETVEIDAEELVKDIKKAGLELDMDIYNHMISLYSKLGSYRKAALVFKGMQEIG 840

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P   TFN++I+ Y + ++  +A+ + ++M      P+  TY  +I+ YG       A 
Sbjct: 841 CSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAE 900

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +F  +++ G     +  N M+  Y   G   + + + E     G  P  +T  +L  +Y
Sbjct: 901 LVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEVIEQMKADGFEPSLTTIHMLMDSY 960

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K       +++L+ + + G+ P+
Sbjct: 961 GKGGATGKAEEVLETLPEIGMSPD 984



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 130/297 (43%), Gaps = 8/297 (2%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +AL  ++ +       PN     ++L    +A        LF +  ES +   +  YN +
Sbjct: 62  RALELYECLNVARWYAPNPRMLAVMLSVLGRANQPGLAQELF-DRAESSIGNCVQVYNSL 120

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH--- 184
           M  Y ++G    ++ +L RM+   C+PD++TFN++I +   R      E +  SL+    
Sbjct: 121 MSVYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKA---RTRGGMQEGLASSLLQDVY 177

Query: 185 -SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
            +  +P   T+N++I           A  +F++M      P   TY  +I++YG    V 
Sbjct: 178 AAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVE 237

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  IF  + + G      T N++L A+  +G   E + +     +   + D  TY  + 
Sbjct: 238 AASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMI 297

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRS 360
             Y KA M    ++L  +M++ G  P+   F   ++T   +   +++ +   D+ +S
Sbjct: 298 HMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKS 354



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 105/207 (50%), Gaps = 7/207 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ+Q  +  D   Y+ ++    + G+      +   MR++ C  D   YN +I    H  
Sbjct: 246 MQEQG-FTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMI----HMY 300

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            KA    KA   + +MK   RC P+ VT+ +L+    +A  V++  A+F+++ +S + P 
Sbjct: 301 GKAGMHRKAEELYVQMKEEGRC-PDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPT 359

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           +  ++ ++ AY K  M  + E   S M     +PD++ +++++D + K +  +K   ++K
Sbjct: 360 LQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAEMPEKCIILYK 419

Query: 181 SLMHSKEKPTLPTFNSMI-INYGKARL 206
           +++ S  KP L  +  M+ + Y K+ L
Sbjct: 420 AMVGSGLKPELSVYAIMVRVFYQKSSL 446



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 7/241 (2%)

Query: 109 FKELHESILAPDIYTYNGVMD-------AYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
           F E  E +     Y    V D       +Y + GM  E  +    M +   + D      
Sbjct: 546 FSEAEEEMRTSQTYGQAQVSDFLKVLVASYDRAGMQDEALARFLDMTTEGLEMDAEVLQT 605

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
            +  Y ++       ++    +H+ E        ++I +YGK +L   AE VF+ +    
Sbjct: 606 AVMCYCRKGFAFVAHELLIDCLHAFEVKDSAMHVAIIASYGKLKLWQNAEIVFRDLQRHG 665

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
           +  +   Y  +++ Y    N  RA    D +   G     +  N +LEA+   G   E  
Sbjct: 666 FAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNAACANYVLEAFGRAGKAKELS 725

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
             ++    MG+TP+S T+ +++ A+++    E  + + ++M + G  P+ + F   L  +
Sbjct: 726 EFYQRLPEMGITPNSRTFVVIFHAFSRNGNLEEARSMYRQMREAGFSPSIQVFKALLALY 785

Query: 342 S 342
           S
Sbjct: 786 S 786



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/428 (19%), Positives = 154/428 (35%), Gaps = 95/428 (22%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL---------HT- 59
           D+  ++ LI  +GK G    A  +F +M  S  RP    ++A+I A+          HT 
Sbjct: 324 DSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFSDAEHTY 383

Query: 60  --------RDKAKALAKALGYFQKMKGMERC------------KPNIVTYNILLRACAQA 99
                   R    A +  L  F K +  E+C            KP +  Y I++R   Q 
Sbjct: 384 SCMLRAGVRPDLLAYSVMLDVFFKAEMPEKCIILYKAMVGSGLKPELSVYAIMVRVFYQK 443

Query: 100 RNVDQVNALFKELHESI------------------------------LAPDIYTYNGVMD 129
            ++ ++  L KE+ +S                               +A  + T N V+ 
Sbjct: 444 SSLAEIENLSKEMVQSSASLAALSSTLAKGGFYAEAAVVLKISFAQGVAVKVETLNDVLG 503

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A+  +G + +   ++  + S +       +  L     K   F + E+  ++     +  
Sbjct: 504 AFEASGKLSDARDLVHAVSSIEPSVAAHLYKRLALMLAKAGRFSEAEEEMRTSQTYGQAQ 563

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMT--------------AMKYTP---SFITYE-- 230
                  ++ +Y +A +Q +A   F  MT               M Y     +F+ +E  
Sbjct: 564 VSDFLKVLVASYDRAGMQDEALARFLDMTTEGLEMDAEVLQTAVMCYCRKGFAFVAHELL 623

Query: 231 ----------------CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
                            II  YG       A  +F +L + G     S  +A+L AY   
Sbjct: 624 IDCLHAFEVKDSAMHVAIIASYGKLKLWQNAEIVFRDLQRHGFAGNTSAYSALLSAYAET 683

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           G    A    +N    G+ P+++    + +A+ +A   + + +  +R+ + GI PN R F
Sbjct: 684 GNFERATRALDNMVAAGLQPNAACANYVLEAFGRAGKAKELSEFYQRLPEMGITPNSRTF 743

Query: 335 LEALETFS 342
           +     FS
Sbjct: 744 VVIFHAFS 751


>gi|302761794|ref|XP_002964319.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
 gi|300168048|gb|EFJ34652.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
          Length = 384

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 157/322 (48%), Gaps = 5/322 (1%)

Query: 23  KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82
           +K +   A+ L   M+ SG +PD  +YN L+   +++  + +A  K L     MK  ++ 
Sbjct: 30  QKSKLDHALRLLEVMKESGKKPDEILYNCLVNGLVNS-GRLEAAEKIL---DDMK-QDKV 84

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
             N+VTY  L++  A A  +     LF+E+ +   +P+ +TYN ++  YG+ G+ KE   
Sbjct: 85  SANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALE 144

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +   M    C  D+ T+N+ I  YGKR   + ME++   +      P   T+N+++  Y 
Sbjct: 145 LYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYA 204

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           K     KA  + ++MT   Y P+  TY  +++      +V+ A ++F+ L   G    + 
Sbjct: 205 KKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIV 264

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T +AML  Y  +GL TEA  L++     G  P    Y  L ++Y    M +      + M
Sbjct: 265 TYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDM 324

Query: 323 EQNGIVPNKRFFLEALETFSSS 344
            ++GIVP+ + +   ++ +  +
Sbjct: 325 RKSGIVPDTKIYTALMDAYGKA 346



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 146/310 (47%), Gaps = 9/310 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ    A+   Y+ LI      G+ +    LF EM++ G  P+   YNALI  +     +
Sbjct: 80  KQDKVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGESPNSWTYNALIQGY----GR 135

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
                +AL  + +M G+  C  ++ TYNI +    +   ++ +  L  E+    + PD  
Sbjct: 136 KGLFKEALELYDEMDGV-GCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQV 194

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++D Y K     +   +L  M     +P+I T+N+++ S  K Q+  +  Q+F++L
Sbjct: 195 TYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENL 254

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 P + T+++M+  YG+  L  +A  ++ +M      P  I Y  +I  YG+    
Sbjct: 255 KSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMY 314

Query: 243 SRAREIFDELSKLG--KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
             A   F ++ K G   D K+ T  A+++AY   G   EA+LL+      G  PD  TY 
Sbjct: 315 QEALACFQDMRKSGIVPDTKIYT--ALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYG 372

Query: 301 LLYKAYTKAN 310
           +L +A+  A 
Sbjct: 373 ILVRAFANAG 382



 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 5/135 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K +  + +   YS ++++ G+ G    A  L+ EM  +GC P    Y+ LI ++ H    
Sbjct: 255 KSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMY 314

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +ALA     FQ M+      P+   Y  L+ A  +A    +   L+ E+ +    PD  
Sbjct: 315 QEALA----CFQDMR-KSGIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPDGI 369

Query: 123 TYNGVMDAYGKNGMI 137
           TY  ++ A+   G +
Sbjct: 370 TYGILVRAFANAGRL 384


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 158/322 (49%), Gaps = 15/322 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT---RDKAKALAKAL 70
           YS +I  + K G    A+ LF+EM   G + D   Y++LI    +     D AK L + +
Sbjct: 248 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 307

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           G            P++VT++ L+    +   + +   L+ E+    +APD  TYN ++D 
Sbjct: 308 G--------RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDG 359

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K   + E   +   M S  C+PDI+T+++LI+SY K +  D   ++F+ +      P 
Sbjct: 360 FCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPN 419

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREI 248
             T+N++++ + ++     A+ +FQ+M +    PS +TY   I + G CDN  +++A EI
Sbjct: 420 TITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYG--ILLDGLCDNGELNKALEI 477

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F+++ K    + +   N ++   C      +A  LF +  + GV PD  TY ++     K
Sbjct: 478 FEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCK 537

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
                    L ++M+++G  P+
Sbjct: 538 KGSLSEADMLFRKMKEDGCTPD 559



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 133/306 (43%), Gaps = 48/306 (15%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R  I D   +S LI V  K+G+   A  L++EM   G  PD   YN+LI        K  
Sbjct: 309 RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFC----KEN 364

Query: 65  ALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            L +A   F  M  KG   C+P+IVTY+IL+ +  +A+ VD    LF+E+    L P+  
Sbjct: 365 CLHEANQMFDLMVSKG---CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTI 421

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++  + ++G +   + +   M S    P ++T+ +L+D        +K  ++F+ +
Sbjct: 422 TYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKM 481

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD-- 240
             S+    +  +N                                     I ++G C+  
Sbjct: 482 QKSRMTLGIGIYN-------------------------------------IIIHGMCNAS 504

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            V  A  +F  LS  G    V T N M+   C  G  +EAD+LF      G TPD  TY 
Sbjct: 505 KVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYN 564

Query: 301 LLYKAY 306
           +L +A+
Sbjct: 565 ILIRAH 570



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 135/301 (44%), Gaps = 10/301 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQR    D    S LI  +  KG+   A+ L   M   G +PD   Y  +    L+   K
Sbjct: 170 KQR---PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPV----LNRLCK 222

Query: 63  AKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           +   A AL  F+KM+  ER  K ++V Y+I++ +  +  + D   +LF E+    +  D+
Sbjct: 223 SGNSALALDLFRKME--ERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADV 280

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TY+ ++     +G   +   +L  M      PD++TF+ LID + K     + ++++  
Sbjct: 281 VTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNE 340

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++     P   T+NS+I  + K     +A  +F  M +    P  +TY  +I  Y     
Sbjct: 341 MITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKR 400

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           V     +F E+S  G      T N ++  +C +G    A  LF+   + GV P   TY +
Sbjct: 401 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 460

Query: 302 L 302
           L
Sbjct: 461 L 461



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 120/267 (44%), Gaps = 9/267 (3%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R    DT  Y+ LI    K+     A  +F  M + GC PD   Y+ LI ++     KAK
Sbjct: 344 RGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYC----KAK 399

Query: 65  ALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +   +  F+++  KG+    PN +TYN L+    Q+  ++    LF+E+    + P + 
Sbjct: 400 RVDDGMRLFREISSKGL---IPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVV 456

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++D    NG + +   +  +M+ ++    I  +N++I         D    +F SL
Sbjct: 457 TYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSL 516

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                KP + T+N MI    K     +A+ +F+KM     TP   TY  +I  +     +
Sbjct: 517 SDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGL 576

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLE 269
             + E+ +E+   G     ST+  +++
Sbjct: 577 ISSVELIEEMKVCGFSADSSTIKMVID 603



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 148/329 (44%), Gaps = 15/329 (4%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA-HLHTRDKAKA 65
           Y  DT  +S L+     +G+   A+ L   M     RPD    + LI    L  R     
Sbjct: 136 YEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGR----- 190

Query: 66  LAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           +++AL    +M   G +   P+ VTY  +L    ++ N      LF+++ E  +   +  
Sbjct: 191 VSEALVLIDRMVEYGFQ---PDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQ 247

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ V+D+  K+G   +  S+ + M+    K D++T++ LI        +D   ++ + ++
Sbjct: 248 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 307

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DN 241
                P + TF+++I  + K     +A+ ++ +M      P  ITY  +I   G+C  + 
Sbjct: 308 GRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID--GFCKENC 365

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +  A ++FD +   G +  + T + ++ +YC      +   LF    + G+ P++ TY  
Sbjct: 366 LHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNT 425

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           L   + ++      ++L + M   G+ P+
Sbjct: 426 LVLGFCQSGKLNAAKELFQEMVSRGVPPS 454



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/299 (20%), Positives = 125/299 (41%), Gaps = 7/299 (2%)

Query: 49  YNALITAHLHTRDKAK------ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
           Y+++  A L  +++ +       +  A+  F+ M    R  P  + +N L  A A+ +  
Sbjct: 28  YSSITEAKLSYKERLRNGIVDIKVNDAIDLFESMI-QSRPLPTPIDFNRLCSAVARTKQY 86

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           D V    K +  + +  D+YT   +++ Y +   +    SVL R      +PD ITF+ L
Sbjct: 87  DLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTL 146

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           ++ +       +   +   ++  K++P L T +++I          +A  +  +M    +
Sbjct: 147 VNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGF 206

Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
            P  +TY  ++       N + A ++F ++ +      V   + ++++ C +G   +A  
Sbjct: 207 QPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALS 266

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           LF      G+  D  TY  L          +   K+L+ M    I+P+   F   ++ F
Sbjct: 267 LFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVF 325



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/312 (18%), Positives = 125/312 (40%), Gaps = 5/312 (1%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ LF  M  S   P P  +N L +A   T+     L    G   ++ G+E    ++ T 
Sbjct: 54  AIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKG--MELNGIEH---DMYTM 108

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
            I++    + + +    ++     +    PD  T++ +++ +   G + E  +++ RM  
Sbjct: 109 TIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVE 168

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
            + +PD++T + LI+    +    +   +   ++    +P   T+  ++    K+     
Sbjct: 169 MKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSAL 228

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  +F+KM       S + Y  +I       +   A  +F+E+   G    V T ++++ 
Sbjct: 229 ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIG 288

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             C +G   +   +        + PD  T+  L   + K       ++L   M   GI P
Sbjct: 289 GLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAP 348

Query: 330 NKRFFLEALETF 341
           +   +   ++ F
Sbjct: 349 DTITYNSLIDGF 360



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 11/160 (6%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  L+  +   G+   A+ +F +M+ S       +YN +I    H    A  +  A   F
Sbjct: 458 YGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIII----HGMCNASKVDDAWSLF 513

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             +  KG+   KP++VTYN+++    +  ++ + + LF+++ E    PD +TYN ++ A+
Sbjct: 514 CSLSDKGV---KPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAH 570

Query: 132 -GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170
            G +G+I  +E ++  MK      D  T  ++ID    R+
Sbjct: 571 LGGSGLISSVE-LIEEMKVCGFSADSSTIKMVIDMLSDRR 609



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 6/145 (4%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQK R  +   GIY+ +I  M    +   A  LF  + + G +PD   YN +I       
Sbjct: 481 MQKSRMTLG-IGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLC--- 536

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K  +L++A   F+KMK  + C P+  TYNIL+RA      +     L +E+     + D
Sbjct: 537 -KKGSLSEADMLFRKMKE-DGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSAD 594

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLS 145
             T   V+D      + K    +LS
Sbjct: 595 SSTIKMVIDMLSDRRLDKSFLDMLS 619


>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
 gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 150/337 (44%), Gaps = 40/337 (11%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R  + D  +Y+  I  +   G+ + A    +EMRN G +PD S YN +I +H    + AK
Sbjct: 548 RNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAK 607

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNIL-------------------------------- 92
           AL        +MK M   KPN++TYN L                                
Sbjct: 608 ALK----LLHEMK-MSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTH 662

Query: 93  ---LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
              L+AC+Q+R +D +  + + +  + L  DI  YN ++     +GM ++   VL  M  
Sbjct: 663 RRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLG 722

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
           +   PD ITFN LI  + K    D     +  ++H    P + TFN+++         G+
Sbjct: 723 SGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGE 782

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  V  +M      P+ +TY+ + T +G   N   A  ++ E+   G   KVST NA++ 
Sbjct: 783 AGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALIS 842

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +   G+ T+A  LF++    GV P S TY +L   +
Sbjct: 843 DFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGW 879



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 157/351 (44%), Gaps = 14/351 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M K+R    +   Y  LI    K      A+ ++ +M   G + +  + ++L+      R
Sbjct: 439 MMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNG---LR 495

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
              K + +A+  F+   G      + V Y  L+    +A ++       +EL +  + PD
Sbjct: 496 QNGK-IEEAMALFKDASG-SGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPD 553

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
              YN  ++     G  KE +S L+ M++   KPD  T+N +I S+ ++    K  ++  
Sbjct: 554 AVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLH 613

Query: 181 SLMHSKEKPTLPTFNSMIIN-YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
            +  S  KP L T+N+++   +G   ++ KA+Y+  +M +  ++PS +T+  ++      
Sbjct: 614 EMKMSSIKPNLITYNTLVAGLFGTGAVE-KAKYLLNEMVSAGFSPSSLTHRRVLQACSQS 672

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             +    +I + +   G    ++  N +L+  C +G+  +A ++ E     G+ PD+ T+
Sbjct: 673 RRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITF 732

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
             L   + K++  +       +M    I PN       + TF++ L G +S
Sbjct: 733 NALILGHCKSSHLDNAFATYAQMLHQNISPN-------IATFNTLLGGLES 776



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 143/348 (41%), Gaps = 32/348 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL------- 66
           Y+ L+A   + GQ   A  +   M+ +G  P+ + Y   I  +  T+   +A        
Sbjct: 207 YNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMV 266

Query: 67  ------------------------AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
                                   ++A   F++M  +    PN VTY  L+ + A+A   
Sbjct: 267 RNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVG-AAPNHVTYCTLIDSLAKAGRG 325

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
            ++ +L  E+    +  D+ TY  +MD  GK G   E++  L    S+   P+ +T+ +L
Sbjct: 326 KELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVL 385

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           ID+  K    D+ EQV   +      P + TF+S+I  + K  L  KA    + M     
Sbjct: 386 IDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGI 445

Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
            P+ +TY  +I  +        A E++ ++   G  +    +++++     NG   EA  
Sbjct: 446 NPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMA 505

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           LF+++   G++ D   Y  L     KA       K  + +    ++P+
Sbjct: 506 LFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPD 553



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 6/210 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD  +Y+ L+ V+   G TR A  +  EM  SG  PD   +NALI  H     K+  L  
Sbjct: 692 ADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHC----KSSHLDN 747

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A   + +M   +   PNI T+N LL        + +   +  E+ +S L P+  TY+ + 
Sbjct: 748 AFATYAQML-HQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILA 806

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
             +GK     E   +   M      P + T+N LI  + K     + +++FK +      
Sbjct: 807 TGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVH 866

Query: 189 PTLPTFNSMIIN-YGKARLQGKAEYVFQKM 217
           PT  T++ ++   Y  AR Q      F ++
Sbjct: 867 PTSCTYDILVSGWYDLAREQKSQNTYFTEI 896



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 117/287 (40%), Gaps = 15/287 (5%)

Query: 43  RP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN 101
           RP DP+  NAL+ +H   R    A+A           +   +P  V YNILL A +   +
Sbjct: 69  RPADPASLNALLYSHCRLRLLRPAIAL----------LRSSRPTTVAYNILLAALSDHAH 118

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
                A+  E+ +  +  D  T N ++    +NG +    ++  R        D+I +N 
Sbjct: 119 AP---AVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALADRGGGIHAL-DVIGWNT 174

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           LI  Y +         V   +        +  +N+++  + +A     A  V   M    
Sbjct: 175 LIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAG 234

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
             P+  TY   I  Y     V  A ++++ + + G  + V TL+A++   C +G  +EA 
Sbjct: 235 VDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAY 294

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
            LF     +G  P+  TY  L  +  KA   + +  LL  M   G+V
Sbjct: 295 ALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVV 341



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 68/338 (20%), Positives = 136/338 (40%), Gaps = 24/338 (7%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALG 71
           Y+ L+A +        A  + +EM   G   D    N L+         D A ALA   G
Sbjct: 106 YNILLAALSDHAH---APAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALADRGG 162

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
               +        +++ +N L+    +  +     ++   +    L  D+  YN ++  +
Sbjct: 163 GIHAL--------DVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGF 214

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G +     VL  MK     P++ T+   I  Y + +  ++   +++ ++ +     +
Sbjct: 215 CRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDV 274

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T ++++    +     +A  +F++M  +   P+ +TY  +I              +  E
Sbjct: 275 VTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGE 334

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEA--DLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +   G  M + T  A+++     G   E    L F  S N+  +P+  TY +L  A  KA
Sbjct: 335 MVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNL--SPNGVTYTVLIDALCKA 392

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
           +  +  +++L  ME+  I PN       + TFSS + G
Sbjct: 393 HNVDEAEQVLLEMEEKSISPN-------VVTFSSVING 423


>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
 gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
          Length = 646

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 159/329 (48%), Gaps = 4/329 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++   Y  D   Y+ LI+++ +  +    + LF  M+  G R +   YN ++  +    
Sbjct: 64  LKQDESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLY---G 120

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +  +  +    FQ+MK +E   P+  TYN ++ AC Q  +  +   LF+E+ E+   P+
Sbjct: 121 KRGDSWDRIQSLFQEMKDLE-ISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPN 179

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TYN ++D YGK GM KE   +L  M++    P+I+T+N LI +Y +    D+   + K
Sbjct: 180 RVTYNALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKK 239

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           SL+     P   T+ ++I  + +A    KA   F +M     TP+ +TY  +I +YG  +
Sbjct: 240 SLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRME 299

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            +    ++F  + +      + T N++L+++   G+ TE   +F      G  P   T+ 
Sbjct: 300 KLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFN 359

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           +L + Y +    +    + K + + G+ P
Sbjct: 360 ILIECYGRCGYVDYSVDIYKGLLRTGLQP 388



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 153/320 (47%), Gaps = 5/320 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I    +    + A+ LF EM+ +GC P+   YNAL+   ++ +      A  
Sbjct: 144 DDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALL--DVYGKGGMHKEASE 201

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L    +  G+    PNIVTYN L+ A A+A   D+  AL K L    L PD +TY  ++ 
Sbjct: 202 LLVEMEAAGI---SPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLIS 258

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A+ +    ++     + M+   C P+I+T+N+LID YG+ +  D M +VFK +      P
Sbjct: 259 AFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTP 318

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            L T+NS++ ++G   +  +   VF++M    Y P   T+  +I  YG C  V  + +I+
Sbjct: 319 DLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIY 378

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             L + G    V T  A++ +    G   + + + +     G+    + +  L  +Y  +
Sbjct: 379 KGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANS 438

Query: 310 NMKELVQKLLKRMEQNGIVP 329
                ++K +  +E++   P
Sbjct: 439 GQFFQLRKYIDELEKSAKQP 458



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 148/362 (40%), Gaps = 39/362 (10%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
            +  +G++G+ + A+ +F  +R   C     V  A I + L   ++   L  AL  F+ +
Sbjct: 8   FVKALGRQGKWKKALEVFEWIRKHDCFKLRGVATASILSVLGNHEQ---LPAALELFESL 64

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG- 135
           K  E    ++  Y  L+   ++AR  D+   LF+ +       +  TYN ++D YGK G 
Sbjct: 65  KQDESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGD 124

Query: 136 -------MIKEMES----------------------------VLSRMKSNQCKPDIITFN 160
                  + +EM+                             +   MK   C P+ +T+N
Sbjct: 125 SWDRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYN 184

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
            L+D YGK     +  ++   +  +   P + T+N +I  Y +A L  +A  + + + + 
Sbjct: 185 ALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSK 244

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
              P   TY  +I+ +   +   +A E F E+ K      + T N +++ Y       + 
Sbjct: 245 GLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDM 304

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALET 340
             +F+       TPD  T+  L K++    M   V  + + M++ G +P    F   +E 
Sbjct: 305 MKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIEC 364

Query: 341 FS 342
           + 
Sbjct: 365 YG 366



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 85/153 (55%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+I  +N ++  CA+   +++   L +E+ ++ L PD  TYN +M  YG+ GM  + E V
Sbjct: 494 PDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEEV 553

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           +S M+     P++IT+N L+ SY K    D   +VF  ++ ++ +P   TFN+++ +Y  
Sbjct: 554 MSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSS 613

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
             L  +A  V + MT     P+ IT++ ++  Y
Sbjct: 614 LGLYKEALSVIEYMTEHGCQPTQITFKALLDGY 646



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 149/364 (40%), Gaps = 41/364 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI + G+  +    M +F  M+   C PD   +N+L    L +      L +    F
Sbjct: 288 YNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSL----LKSFGNCGMLTEVSNVF 343

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++MK      P + T+NIL+    +   VD    ++K L  + L P + T+  +M +  +
Sbjct: 344 REMKRAGY-MPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAR 402

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-------RQAFDKMEQVFKS----- 181
            G  ++ E V   M     +        LI SY         R+  D++E+  K      
Sbjct: 403 EGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGI 462

Query: 182 ------------------------LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
                                   L  +   P +  FN+MI    K     +A  + +++
Sbjct: 463 LCKTFVLAYCKCCMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEI 522

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
              +  P  +TY C+++MYG      +A E+  E+ + GK   + T N +L +Y  +G  
Sbjct: 523 RKAQLKPDGVTYNCLMSMYGREGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRM 582

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEA 337
            +A  +F +     V PD+ T+  L  +Y+   + +    +++ M ++G  P +  F   
Sbjct: 583 DDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKAL 642

Query: 338 LETF 341
           L+ +
Sbjct: 643 LDGY 646



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/370 (19%), Positives = 152/370 (41%), Gaps = 41/370 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  LI+   +  +   A+  F+EMR + C P+   YN LI  +    +K   + K 
Sbjct: 249 DEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIY-GRMEKLDDMMKV 307

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
             + Q+    + C P++VT+N LL++      + +V+ +F+E+  +   P + T+N +++
Sbjct: 308 FKFMQE----KNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIE 363

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK--------- 180
            YG+ G +     +   +     +P + TF  L+ S  +   + + E+V +         
Sbjct: 364 CYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQL 423

Query: 181 ------SLMHS---------------------KEKPTLPTFNSMIINYGKARLQGKAEYV 213
                  L+HS                     K+  +     + ++ Y K  +  +A+  
Sbjct: 424 SDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCCMDNEAQLA 483

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
             ++    ++P    +  +I+M      + RA ++ +E+ K        T N ++  Y  
Sbjct: 484 LNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGR 543

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
            G+  +A+ +       G  P+  TY  L  +YTK    +   ++   M    + P+   
Sbjct: 544 EGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFT 603

Query: 334 FLEALETFSS 343
           F   + ++SS
Sbjct: 604 FNTLVGSYSS 613



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 101/235 (42%), Gaps = 11/235 (4%)

Query: 130 AYGKNGMIKEMESVLSRMKSNQC-KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           A G+ G  K+   V   ++ + C K   +    ++   G  +      ++F+SL   +  
Sbjct: 11  ALGRQGKWKKALEVFEWIRKHDCFKLRGVATASILSVLGNHEQLPAALELFESLKQDESY 70

Query: 189 P-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG-YCDNVSRAR 246
              +  + S+I    +AR   +   +F+ M       + +TY  ++ +YG   D+  R +
Sbjct: 71  SLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQ 130

Query: 247 EIFDELSKLGKDMKVS----TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +F E+    KD+++S    T N M+ A   N    EA  LF+     G  P+  TY  L
Sbjct: 131 SLFQEM----KDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNAL 186

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDL 357
              Y K  M +   +LL  ME  GI PN   + E +  ++ +    ++ + K  L
Sbjct: 187 LDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSL 241


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 154/324 (47%), Gaps = 11/324 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G T  A+ L   M    C+PD  VY ++I +      K + + +A   F
Sbjct: 175 YGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLC----KDRQVTEAFNLF 230

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM G +   P+I TY  L+ +         V  L  ++  S + PD+  ++ V+DA  K
Sbjct: 231 SKMVG-QGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCK 289

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G I E   V+  M     +P+++T+N L+D +  +   D+  +VF +++H+   P + +
Sbjct: 290 EGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVIS 349

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE---IFD 250
           +N++I  Y K +   KA Y+F++M   +  P+ +TY  +  M+G C +V R ++   +F 
Sbjct: 350 YNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTL--MHGLC-HVGRLQDAIALFH 406

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+   G+   ++T   +L+  C      EA  L +      + PD   Y ++     +A 
Sbjct: 407 EMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAG 466

Query: 311 MKELVQKLLKRMEQNGIVPNKRFF 334
             E  + +   +   G+ PN R +
Sbjct: 467 ELEAARDIFSNLSSKGLRPNVRTY 490



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 129/304 (42%), Gaps = 9/304 (2%)

Query: 29  LAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88
            A  + +++   G +PD + +  LI   L    K   +  AL  F KM G E  +PN+VT
Sbjct: 120 FAFSVLAKILKLGLQPDTATFTTLIRG-LCVEGK---IGDALHLFDKMIG-EGFQPNVVT 174

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y  L+    +  N +    L + + +    PD+  Y  ++D+  K+  + E  ++ S+M 
Sbjct: 175 YGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMV 234

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
                PDI T+  LI S      +  +  +   +++SK  P +  F++++    K     
Sbjct: 235 GQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKIT 294

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNA 266
           +A  V   M      P+ +TY  +  M G+C    +  A ++FD +   G    V + N 
Sbjct: 295 EAHDVVDMMIIRGVEPNVVTYNAL--MDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNT 352

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           ++  YC      +A  LFE      + P++ TY  L          +    L   M  +G
Sbjct: 353 LINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHG 412

Query: 327 IVPN 330
            +P+
Sbjct: 413 QIPD 416



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 135/318 (42%), Gaps = 44/318 (13%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D  I+S ++  + K+G+   A  +   M   G  P+   YNAL+  H    +    + 
Sbjct: 274 MPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSE----MD 329

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A+  F  M       PN+++YN L+    + + +D+   LF+E+ +  L P+  TYN +
Sbjct: 330 EAVKVFDTMVH-NGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTL 388

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           M      G +++  ++   M ++   PD+ T+ +L+D   K+   D+   + K++  S  
Sbjct: 389 MHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNM 448

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P +  +  +I    +A   G+ E                                 AR+
Sbjct: 449 DPDIQIYTIVIDGMCRA---GELE--------------------------------AARD 473

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY- 306
           IF  LS  G    V T   M+   C  GL  EA+ LF      G +PD  TY  + +   
Sbjct: 474 IFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLL 533

Query: 307 -TKANMK--ELVQKLLKR 321
             K  ++  +L+Q++L R
Sbjct: 534 QNKEALRAIQLLQEMLAR 551



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 67/356 (18%), Positives = 134/356 (37%), Gaps = 72/356 (20%)

Query: 46  PSVYNALITAHLHTRD-KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQ 104
           P  +++L     H++      L  AL  F +M  M    P+ V +N LL + A+ +    
Sbjct: 27  PPYFSSLSHNRFHSKSLNFNTLDDALSSFNRMLHMHP-PPSTVDFNRLLTSIAKTKQYPT 85

Query: 105 VNALFKELHESILAPDIYTYNGVMDAYGK------------------------------- 133
           V +L  ++    + PD+YT N +++++                                 
Sbjct: 86  VFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIR 145

Query: 134 ----NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
                G I +   +  +M     +P+++T+  LI+   K    +   ++ +S+     +P
Sbjct: 146 GLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQP 205

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII-TMYGYCD-------- 240
            +  + S+I +  K R   +A  +F KM     +P   TY  +I ++   C+        
Sbjct: 206 DVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLL 265

Query: 241 --------------------------NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
                                      ++ A ++ D +   G +  V T NA+++ +C+ 
Sbjct: 266 NQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQ 325

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
               EA  +F+   + G  P+  +Y  L   Y K    +    L + M Q  ++PN
Sbjct: 326 SEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPN 381


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 158/328 (48%), Gaps = 9/328 (2%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           + Y+ D   Y  LI  + K GQ + A+ L  EM  S  +P+  +Y+ALI        K  
Sbjct: 154 QGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLC----KDG 209

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            ++ ALG   ++ G      + VTYN L+  C       +V  L  ++    + PD YT+
Sbjct: 210 FVSDALGLCSQI-GERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTF 268

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++DA  K G I E + VL+ M     KPDI+T+N L++ Y  R+   +  ++F  ++ 
Sbjct: 269 NILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVK 328

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--V 242
              +P +  +N +I  Y K ++  +A  +F+++      P+  +Y  +I   G C++  +
Sbjct: 329 RGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLID--GLCNSGRI 386

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           S  +++ DE+    +   V T N +++A C  G   EA  +       GV P+  TY  +
Sbjct: 387 SHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAM 446

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
              Y   N   + + +  RM ++G+ P+
Sbjct: 447 MDGYCLRNNVNVAKDIFNRMVKSGLEPD 474



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 149/332 (44%), Gaps = 10/332 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  +R    D   Y+ L+     +     A  LF+ M   G  PD   YN LI  +    
Sbjct: 290 MMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYC--- 346

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K K + +A+  F+++   +   P I +YN L+     +  +  V  L  E+H S   PD
Sbjct: 347 -KTKMVDEAMVLFKELCN-KNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPD 404

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TYN ++DA  K G I E   VL  M     KP+I+T+N ++D Y  R   +  + +F 
Sbjct: 405 VVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFN 464

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++ S  +P +  +N +I  Y K  +  +A  +F++M      P   +Y  +I   G C+
Sbjct: 465 RMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLID--GLCN 522

Query: 241 --NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              +   +E+ DE+   G+   V T N +L+A+C      +A  LF      G+ PD  T
Sbjct: 523 LGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYT 581

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              +     K    ++ +  LK +  +G  PN
Sbjct: 582 NHAIVDNLCKGEKLKMAEDALKHLLMHGCSPN 613



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 152/323 (47%), Gaps = 10/323 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ LI  + K+G+   A  + + M   G +PD   YNAL+  +    +    + +A
Sbjct: 264 DDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSREN----VHEA 319

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F +M  +G+E   P+++ YN+L+    + + VD+   LFKEL    L P I +YN +
Sbjct: 320 RELFNRMVKRGLE---PDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSL 376

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D    +G I  ++ +L  M  +   PD++T+N+LID+  K     +   V   +M    
Sbjct: 377 IDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGV 436

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           KP + T+N+M+  Y        A+ +F +M      P  + Y  +I  Y   + V  A  
Sbjct: 437 KPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIV 496

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F E+        +++ N++++  C  G       L +   + G +PD  TY +L  A+ 
Sbjct: 497 LFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFC 556

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           K    +    L +++ + GI P+
Sbjct: 557 KTQPFDKAISLFRQIVE-GIWPD 578



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 140/317 (44%), Gaps = 10/317 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  +   G+      L  EM  S   PD   YN LI A      K   + +ALG  
Sbjct: 373 YNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALC----KEGRILEALGVL 428

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             M  KG+   KPNIVTYN ++       NV+    +F  + +S L PDI  YN +++ Y
Sbjct: 429 VMMMKKGV---KPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGY 485

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K  M+ E   +   M+     PDI ++N LID          ++++   +  S + P +
Sbjct: 486 CKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDV 545

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+N ++  + K +   KA  +F+++    + P F T   I+      + +  A +    
Sbjct: 546 ITYNILLDAFCKTQPFDKAISLFRQIVEGIW-PDFYTNHAIVDNLCKGEKLKMAEDALKH 604

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           L   G    V T   ++ A C +G   EA LL     +    PD+ T++++     + N 
Sbjct: 605 LLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNE 664

Query: 312 KELVQKLLKRMEQNGIV 328
            +  +KL + M   G+V
Sbjct: 665 TDKAEKLREEMIARGLV 681



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 155/362 (42%), Gaps = 54/362 (14%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA---LA 67
           T ++ KL+  + + G    A+ LF+++++ G  P  + +  LI  + H    A A   LA
Sbjct: 55  TSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLA 114

Query: 68  KAL--GYFQKMKGMERCKPNIVTYNILLRA-C----------------AQARNVDQ---- 104
             L  GY          +PN+VT+N ++   C                AQ    DQ    
Sbjct: 115 TILKSGY----------QPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYG 164

Query: 105 --VNA------------LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
             +N             L +E+ +S + P++  Y+ ++D   K+G + +   + S++   
Sbjct: 165 TLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGER 224

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
               D +T+N LID       + ++ Q+   ++     P   TFN +I    K     +A
Sbjct: 225 GILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEA 284

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAML 268
           + V   M+     P  +TY  +  M GYC  +NV  ARE+F+ + K G +  V   N ++
Sbjct: 285 QGVLAMMSKRGEKPDIVTYNAL--MEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLI 342

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           + YC   +  EA +LF+   N  + P  ++Y  L      +     V+KLL  M  +   
Sbjct: 343 DGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQP 402

Query: 329 PN 330
           P+
Sbjct: 403 PD 404



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 6/181 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + +  I D   Y+ LI  +   G+      L  EM +SG  PD   YN L+ A      K
Sbjct: 502 RHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFC----K 557

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +   KA+  F+++  +E   P+  T + ++    +   +       K L     +P++ 
Sbjct: 558 TQPFDKAISLFRQI--VEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQ 615

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  +++A  K+G   E   +LS+M+ N   PD ITF ++I    +R   DK E++ + +
Sbjct: 616 TYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEM 675

Query: 183 M 183
           +
Sbjct: 676 I 676



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/268 (20%), Positives = 104/268 (38%), Gaps = 15/268 (5%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           ++  G+FQ     + C+                RNVD     F  +      P    ++ 
Sbjct: 16  SRFFGHFQPQNPHKNCR---------------FRNVDDAVTCFNRMVRVFPPPPTSVFDK 60

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++ A  + G      S+ ++++S    P I TF +LI+ Y  +        +  +++ S 
Sbjct: 61  LLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSG 120

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P L TFN++I  +    +  KA    Q + A  Y     TY  +I        +  A 
Sbjct: 121 YQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAAL 180

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+ K      +   +A+++  C +G  ++A  L       G+  D+ TY  L    
Sbjct: 181 HLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGC 240

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFF 334
                 + V +LL +M +  + P+   F
Sbjct: 241 CSVGRWQEVTQLLTKMVRENVDPDDYTF 268



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 119/288 (41%), Gaps = 5/288 (1%)

Query: 58  HTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
           H   + + +  A+  F +M  +    P  V ++ LL A  +  +     +LF +L    +
Sbjct: 28  HKNCRFRNVDDAVTCFNRMVRVFPPPPTSV-FDKLLGAIVRMGHYPTAISLFTQLQSKGI 86

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
           +P I T+  +++ Y          S+L+ +  +  +P+++TFN +I+ +       K   
Sbjct: 87  SPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALD 146

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
             ++L+         T+ ++I    K      A ++ Q+M      P+ + Y  +I   G
Sbjct: 147 FCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALID--G 204

Query: 238 YCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
            C +  VS A  +  ++ + G  +   T N++++  C  G   E   L        V PD
Sbjct: 205 LCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPD 264

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
             T+ +L  A  K       Q +L  M + G  P+   +   +E + S
Sbjct: 265 DYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCS 312


>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
 gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
          Length = 823

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 160/334 (47%), Gaps = 4/334 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++   Y  D   Y+ LI+++ +  +    + LF  M+  G R +   YN ++  +    
Sbjct: 203 LKQDESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRG 262

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           D   +  +    FQ+MK +E   P+  TYN ++ AC Q  +  +   LF+E+ E+   P+
Sbjct: 263 D---SWDRIQSLFQEMKDLE-ISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPN 318

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TYN ++D YGK GM KE   +L  M++    P+I+T+N LI +Y +    D+   + K
Sbjct: 319 RVTYNALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKK 378

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           SL+     P   T+ ++I  + +A    KA   F +M     TP+ +TY  +I +YG  +
Sbjct: 379 SLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRME 438

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            +    ++F  + +      + T N++L+++   G+ TE   +F      G  P   T+ 
Sbjct: 439 KLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFN 498

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           +L + Y +    +    + K + + G+ P    F
Sbjct: 499 ILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTF 532



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 153/320 (47%), Gaps = 5/320 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I    +    + A+ LF EM+ +GC P+   YNAL+   ++ +      A  
Sbjct: 283 DDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALL--DVYGKGGMHKEASE 340

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L    +  G+    PNIVTYN L+ A A+A   D+  AL K L    L PD +TY  ++ 
Sbjct: 341 LLVEMEAAGI---SPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLIS 397

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A+ +    ++     + M+   C P+I+T+N+LID YG+ +  D M +VFK +      P
Sbjct: 398 AFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTP 457

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            L T+NS++ ++G   +  +   VF++M    Y P   T+  +I  YG C  V  + +I+
Sbjct: 458 DLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIY 517

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             L + G    V T  A++ +    G   + + + +     G+    + +  L  +Y  +
Sbjct: 518 KGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANS 577

Query: 310 NMKELVQKLLKRMEQNGIVP 329
                ++K +  +E++   P
Sbjct: 578 GQFFQLRKYIDELEKSAKQP 597



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/361 (21%), Positives = 148/361 (40%), Gaps = 39/361 (10%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
            +  +G++G+ + A+ +F  +R   C     V  A I + L   ++   L  AL  F+ +
Sbjct: 147 FVKALGRQGKWKKALEVFEWIRKHDCFKLRGVATASILSVLGNHEQ---LPAALELFESL 203

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG- 135
           K  E    ++  Y  L+   ++AR  D+   LF+ +       +  TYN ++D YGK G 
Sbjct: 204 KQDESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGD 263

Query: 136 -------MIKEMES----------------------------VLSRMKSNQCKPDIITFN 160
                  + +EM+                             +   MK   C P+ +T+N
Sbjct: 264 SWDRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYN 323

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
            L+D YGK     +  ++   +  +   P + T+N +I  Y +A L  +A  + + + + 
Sbjct: 324 ALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSK 383

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
              P   TY  +I+ +   +   +A E F E+ K      + T N +++ Y       + 
Sbjct: 384 GLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDM 443

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALET 340
             +F+       TPD  T+  L K++    M   V  + + M++ G +P    F   +E 
Sbjct: 444 MKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIEC 503

Query: 341 F 341
           +
Sbjct: 504 Y 504



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 91/164 (55%), Gaps = 2/164 (1%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+I  +N ++  CA+   +++   L +E+ ++ L PD  TYN +M  YG+ GM  + E V
Sbjct: 633 PDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYKAEEV 692

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           +S M+     P++IT+N L+ SY K    D   +VF  ++ ++ +P   TFN+++ +Y  
Sbjct: 693 MSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSS 752

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
             L  +A  V + MT     P+ IT++ ++   GY  N S +R+
Sbjct: 753 LGLYKEALSVIEYMTEHGCQPTQITFKALLD--GYNRNASPSRK 794



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/395 (21%), Positives = 161/395 (40%), Gaps = 47/395 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI + G+  +    M +F  M+   C PD   +N+L    L +      L +    F
Sbjct: 427 YNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSL----LKSFGNCGMLTEVSNVF 482

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++MK      P + T+NIL+    +   VD    ++K L  + L P + T+  +M +  +
Sbjct: 483 REMKRAGY-MPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAR 541

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-------RQAFDKMEQVFKS----- 181
            G  ++ E V   M     +        LI SY         R+  D++E+  K      
Sbjct: 542 EGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGI 601

Query: 182 ------------------------LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
                                   L  +   P +  FN+MI    K     +A  + +++
Sbjct: 602 LCKTFVLAYCKCGMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEI 661

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
              +  P  +TY C+++MYG      +A E+  E+ + GK   + T N +L +Y  +G  
Sbjct: 662 RKAQLKPDGVTYNCLMSMYGREGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRM 721

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEA 337
            +A  +F +     V PD+ T+  L  +Y+   + +    +++ M ++G  P +  F   
Sbjct: 722 DDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKAL 781

Query: 338 LETFSSSLA------GSQSGSAKTDLTRSLSTAKS 366
           L+ ++ + +      G   G    ++ + L  AK+
Sbjct: 782 LDGYNRNASPSRKKPGGDGGGRPIEMIKELDPAKN 816



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 7/239 (2%)

Query: 111 ELHESILAPDIYTYNGVMDA-----YGKNGMIKEMESVLSRMKSNQCKP-DIITFNLLID 164
           E+ E I   D +   GV  A      G +  +     +   +K ++    D+  +  LI 
Sbjct: 162 EVFEWIRKHDCFKLRGVATASILSVLGNHEQLPAALELFESLKQDESYSLDVYAYTSLIS 221

Query: 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKYT 223
              + + FD+   +F+++    ++    T+N M+  YGK      + + +FQ+M  ++ +
Sbjct: 222 ILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLEIS 281

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
           P   TY  +IT      +   A  +F E+ + G      T NA+L+ Y   G+  EA  L
Sbjct: 282 PDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASEL 341

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
                  G++P+  TY  L  AY +A + +    L K +   G+ P++  +   +  F+
Sbjct: 342 LVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFN 400



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 101/235 (42%), Gaps = 11/235 (4%)

Query: 130 AYGKNGMIKEMESVLSRMKSNQC-KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           A G+ G  K+   V   ++ + C K   +    ++   G  +      ++F+SL   +  
Sbjct: 150 ALGRQGKWKKALEVFEWIRKHDCFKLRGVATASILSVLGNHEQLPAALELFESLKQDESY 209

Query: 189 P-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG-YCDNVSRAR 246
              +  + S+I    +AR   +   +F+ M       + +TY  ++ +YG   D+  R +
Sbjct: 210 SLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQ 269

Query: 247 EIFDELSKLGKDMKVS----TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +F E+    KD+++S    T N M+ A   N    EA  LF+     G  P+  TY  L
Sbjct: 270 SLFQEM----KDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNAL 325

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDL 357
              Y K  M +   +LL  ME  GI PN   + E +  ++ +    ++ + K  L
Sbjct: 326 LDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSL 380


>gi|326503836|dbj|BAK02704.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 399

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 150/317 (47%), Gaps = 6/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+      G    A  + SEMR  G  P  +VYNA +   L    KA+   KA+  +
Sbjct: 17  YALLLRAYCTAGSLHRAEGVISEMREHGIPPSATVYNAYLDGLL----KARCAEKAVEVY 72

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           Q+MK  ERC+ N  TY +++    +++       +FKE+       +I TY  +++A+ +
Sbjct: 73  QRMK-RERCRTNTETYTLMINVYGKSKQPMSAMKVFKEMQSIGCKANICTYTALVNAFAR 131

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G+ ++ E V   M+    +PD+  +N L+++Y +        ++F  + H   +P   +
Sbjct: 132 EGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFSLMQHMGCEPDRAS 191

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N ++  YG+A L  +AE VF+ +      P+  ++  ++  +    NV+R  E+  +L 
Sbjct: 192 YNILVDAYGRAGLHREAEAVFESLKRQGMAPTMKSHMLLLAAHARSGNVARCEEVMAQLH 251

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           K G       LNAML AY   G   + + L       G T D  TY +   AY +A   E
Sbjct: 252 KSGLAPDTIALNAMLNAYGRAGRLDDMERLLAAMERRG-TRDVGTYNVAVNAYGRAGYLE 310

Query: 314 LVQKLLKRMEQNGIVPN 330
            ++     +E+ G+  +
Sbjct: 311 RMEAAFASLERRGLAAD 327



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 124/251 (49%), Gaps = 2/251 (0%)

Query: 81  RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140
           RC P   TY +LLRA   A ++ +   +  E+ E  + P    YN  +D   K    ++ 
Sbjct: 9   RCVPTEDTYALLLRAYCTAGSLHRAEGVISEMREHGIPPSATVYNAYLDGLLKARCAEKA 68

Query: 141 ESVLSRMKSNQCKPDIITFNLLIDSYGK-RQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
             V  RMK  +C+ +  T+ L+I+ YGK +Q    M +VFK +     K  + T+ +++ 
Sbjct: 69  VEVYQRMKRERCRTNTETYTLMINVYGKSKQPMSAM-KVFKEMQSIGCKANICTYTALVN 127

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
            + +  L  KAE VF++M    + P    Y  ++  Y        A EIF  +  +G + 
Sbjct: 128 AFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFSLMQHMGCEP 187

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
             ++ N +++AY   GL  EA+ +FE+    G+ P   ++ LL  A+ ++      ++++
Sbjct: 188 DRASYNILVDAYGRAGLHREAEAVFESLKRQGMAPTMKSHMLLLAAHARSGNVARCEEVM 247

Query: 320 KRMEQNGIVPN 330
            ++ ++G+ P+
Sbjct: 248 AQLHKSGLAPD 258



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 150/330 (45%), Gaps = 15/330 (4%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+++R    +T  Y+ +I V GK  Q   AM +F EM++ GC+ +   Y AL+ A     
Sbjct: 75  MKRERCRT-NTETYTLMINVYGKSKQPMSAMKVFKEMQSIGCKANICTYTALVNAFA--- 130

Query: 61  DKAKALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
            +     KA   F++M+  G E   P++  YN L+ A ++A      + +F  +      
Sbjct: 131 -REGLCEKAEEVFEEMQQAGHE---PDVYAYNALMEAYSRAGFPQAASEIFSLMQHMGCE 186

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD  +YN ++DAYG+ G+ +E E+V   +K     P + +  LL+ ++ +     + E+V
Sbjct: 187 PDRASYNILVDAYGRAGLHREAEAVFESLKRQGMAPTMKSHMLLLAAHARSGNVARCEEV 246

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM--KYTPSFITYECIITMY 236
              L  S   P     N+M+  YG+A   G+ + + + + AM  + T    TY   +  Y
Sbjct: 247 MAQLHKSGLAPDTIALNAMLNAYGRA---GRLDDMERLLAAMERRGTRDVGTYNVAVNAY 303

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
           G    + R    F  L + G    V T  + + AY           +FE   + G  PD+
Sbjct: 304 GRAGYLERMEAAFASLERRGLAADVVTWTSRMGAYARKKEYRRCLEIFEEMVDAGCYPDA 363

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNG 326
            T K+L  A +     E V  +++ M +  
Sbjct: 364 GTAKVLVAACSDERQVEQVTAIVRSMHKEA 393



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 108/223 (48%)

Query: 108 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
           ++  L E+   P   TY  ++ AY   G +   E V+S M+ +   P    +N  +D   
Sbjct: 1   MYAALLEARCVPTEDTYALLLRAYCTAGSLHRAEGVISEMREHGIPPSATVYNAYLDGLL 60

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
           K +  +K  +V++ +   + +    T+  MI  YGK++    A  VF++M ++    +  
Sbjct: 61  KARCAEKAVEVYQRMKRERCRTNTETYTLMINVYGKSKQPMSAMKVFKEMQSIGCKANIC 120

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           TY  ++  +       +A E+F+E+ + G +  V   NA++EAY   G P  A  +F   
Sbjct: 121 TYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFSLM 180

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +MG  PD ++Y +L  AY +A +    + + + +++ G+ P 
Sbjct: 181 QHMGCEPDRASYNILVDAYGRAGLHREAEAVFESLKRQGMAPT 223



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 86/214 (40%), Gaps = 31/214 (14%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK----- 64
           D   Y+ L+   G+ G  R A  +F  ++  G  P    +  L+ AH  + + A+     
Sbjct: 188 DRASYNILVDAYGRAGLHREAEAVFESLKRQGMAPTMKSHMLLLAAHARSGNVARCEEVM 247

Query: 65  ----------------ALAKALGYFQKMKGMERC--------KPNIVTYNILLRACAQAR 100
                           A+  A G   ++  MER           ++ TYN+ + A  +A 
Sbjct: 248 AQLHKSGLAPDTIALNAMLNAYGRAGRLDDMERLLAAMERRGTRDVGTYNVAVNAYGRAG 307

Query: 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
            ++++ A F  L    LA D+ T+   M AY +    +    +   M    C PD  T  
Sbjct: 308 YLERMEAAFASLERRGLAADVVTWTSRMGAYARKKEYRRCLEIFEEMVDAGCYPDAGTAK 367

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           +L+ +    +  +++  + +S MH KE  TL T 
Sbjct: 368 VLVAACSDERQVEQVTAIVRS-MH-KEAKTLFTI 399


>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
 gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
          Length = 773

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 157/331 (47%), Gaps = 6/331 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ+Q+W      IY+ +I +MG++G       +F +M  +  + +   + ALI A+    
Sbjct: 72  MQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAY---- 127

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAP 119
            +      +L    +MK  ER +PN++TYN +L AC++   + + +  LF ++    + P
Sbjct: 128 GRNGQYEASLHLLARMK-KERVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQP 186

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D+ TYN ++ A    G++++   V   M  +    D +T+  L+D++       ++E++ 
Sbjct: 187 DLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELL 246

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           + +      P +  +NS+I  Y  A     A  VF++M      P   TY  ++ +YG  
Sbjct: 247 REMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQ 306

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
               + R +F ++ +L     V+T N++++ +   G   E+  LF +  + GV PD +TY
Sbjct: 307 GCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATY 366

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             L     +  +     K+ + M  N   P+
Sbjct: 367 SALLSVCGRGGLTREAAKIHQHMLTNESTPS 397



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 142/315 (45%), Gaps = 5/315 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L++    +G    A  +F  M  SG   D   Y +L+     T   +  L + 
Sbjct: 187 DLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLV----DTFAGSNQLGRV 242

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               ++M+  E   P+I  YN L+ A A A NV     +FK++     APD+ TY+ ++ 
Sbjct: 243 EELLREMED-EGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLR 301

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YG  G  +++ S+ S MK     P + T+N LI  +G+   F +   +F  ++ S  KP
Sbjct: 302 IYGNQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKP 361

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T+++++   G+  L  +A  + Q M   + TPS      +I+ YG       A   +
Sbjct: 362 DDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSY 421

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             + + G D +VS  +A+++ Y   GL  EA       +  G     S+   + +AY+K 
Sbjct: 422 YRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKV 481

Query: 310 NMKELVQKLLKRMEQ 324
            + +   +    ++Q
Sbjct: 482 GLHDEALEFFSELQQ 496



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 134/275 (48%), Gaps = 1/275 (0%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +AL  F+ M+  + CKP    Y I++    +   +++ + +F+++ E+ +  ++Y +  +
Sbjct: 64  RALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTAL 123

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA-FDKMEQVFKSLMHSK 186
           ++AYG+NG  +    +L+RMK  + +P++IT+N ++++  K    ++ +  +F  + H  
Sbjct: 124 INAYGRNGQYEASLHLLARMKKERVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEG 183

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P L T+N+++       L  +A  VF+ M         +TY+ ++  +   + + R  
Sbjct: 184 IQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVE 243

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+  E+   G    ++  N+++EAY   G    A  +F+     G  PD  TY  L + Y
Sbjct: 244 ELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIY 303

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
                 E V+ L   M++    P    +   ++ F
Sbjct: 304 GNQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVF 338



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/285 (19%), Positives = 122/285 (42%), Gaps = 3/285 (1%)

Query: 81  RCKPNIVTYNILLRACAQARNVDQVNALFKELH-ESILAPDIYTYNGVMDAYGKNGMIKE 139
           R K  +  ++++ R  A   +  +   LFK +  +    P  + Y  ++   G+ G++++
Sbjct: 41  RSKLTMQDFSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEK 100

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
              +   M  N  K ++  F  LI++YG+   ++    +   +   + +P L T+N+++ 
Sbjct: 101 CSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKERVEPNLITYNTVLN 160

Query: 200 NYGKARLQGKAEY-VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 258
              K  L  +    +F +M      P  ITY  +++       V +A  +F  +++ G  
Sbjct: 161 ACSKGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVV 220

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
               T  ++++ +  +      + L     + G +PD + Y  L +AY  A        +
Sbjct: 221 ADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGV 280

Query: 319 LKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRSLST 363
            K+M++ G  P+   +   L  + +     Q  S  +D+ + LST
Sbjct: 281 FKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDM-KELST 324



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 55/262 (20%), Positives = 104/262 (39%), Gaps = 42/262 (16%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---------------HLH 58
           Y+ LI V G+ G  + ++ LF +M +SG +PD + Y+AL++                H+ 
Sbjct: 331 YNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHML 390

Query: 59  TRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
           T +   +L  + G       M   K  +V+Y                      + E+ L 
Sbjct: 391 TNESTPSLEASAGLISSYGKMAMYKDALVSY--------------------YRIREAGLD 430

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           P +  Y+ ++  Y K G+  E  S L  M     +  + + N ++++Y K    D+  + 
Sbjct: 431 PQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVGLHDEALEF 490

Query: 179 FKSLMHSK----EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
           F  L   +    ++ T  T   +  + G    + K E+V  K T+    P    Y  +++
Sbjct: 491 FSELQQKEGSEVDERTHETLLGVYCDMGLLE-EAKEEFVIIKETSK--VPGARVYCLLLS 547

Query: 235 MYGYCDNVSRAREIFDELSKLG 256
           +         A ++ DE+   G
Sbjct: 548 LCVRRSKWDYATQLLDEMIAAG 569


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 158/322 (49%), Gaps = 15/322 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT---RDKAKALAKAL 70
           YS +I  + K G    A+ LF+EM   G + D   Y++LI    +     D AK L + +
Sbjct: 277 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 336

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           G            P++VT++ L+    +   + +   L+ E+    +APD  TYN ++D 
Sbjct: 337 G--------RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDG 388

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K   + E   +   M S  C+PDI+T+++LI+SY K +  D   ++F+ +      P 
Sbjct: 389 FCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPN 448

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREI 248
             T+N++++ + ++     A+ +FQ+M +    PS +TY   I + G CDN  +++A EI
Sbjct: 449 TITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYG--ILLDGLCDNGELNKALEI 506

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F+++ K    + +   N ++   C      +A  LF +  + GV PD  TY ++     K
Sbjct: 507 FEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCK 566

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
                    L ++M+++G  P+
Sbjct: 567 KGSLSEADMLFRKMKEDGCTPD 588



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 133/306 (43%), Gaps = 48/306 (15%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R  I D   +S LI V  K+G+   A  L++EM   G  PD   YN+LI        K  
Sbjct: 338 RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFC----KEN 393

Query: 65  ALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            L +A   F  M  KG   C+P+IVTY+IL+ +  +A+ VD    LF+E+    L P+  
Sbjct: 394 CLHEANQMFDLMVSKG---CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTI 450

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++  + ++G +   + +   M S    P ++T+ +L+D        +K  ++F+ +
Sbjct: 451 TYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKM 510

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD-- 240
             S+    +  +N                                     I ++G C+  
Sbjct: 511 QKSRMTLGIGIYN-------------------------------------IIIHGMCNAS 533

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            V  A  +F  LS  G    V T N M+   C  G  +EAD+LF      G TPD  TY 
Sbjct: 534 KVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYN 593

Query: 301 LLYKAY 306
           +L +A+
Sbjct: 594 ILIRAH 599



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 135/301 (44%), Gaps = 10/301 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQR    D    S LI  +  KG+   A+ L   M   G +PD   Y  +    L+   K
Sbjct: 199 KQR---PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPV----LNRLCK 251

Query: 63  AKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           +   A AL  F+KM+  ER  K ++V Y+I++ +  +  + D   +LF E+    +  D+
Sbjct: 252 SGNSALALDLFRKME--ERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADV 309

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TY+ ++     +G   +   +L  M      PD++TF+ LID + K     + ++++  
Sbjct: 310 VTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNE 369

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++     P   T+NS+I  + K     +A  +F  M +    P  +TY  +I  Y     
Sbjct: 370 MITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKR 429

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           V     +F E+S  G      T N ++  +C +G    A  LF+   + GV P   TY +
Sbjct: 430 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 489

Query: 302 L 302
           L
Sbjct: 490 L 490



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 120/267 (44%), Gaps = 9/267 (3%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R    DT  Y+ LI    K+     A  +F  M + GC PD   Y+ LI ++     KAK
Sbjct: 373 RGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYC----KAK 428

Query: 65  ALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +   +  F+++  KG+    PN +TYN L+    Q+  ++    LF+E+    + P + 
Sbjct: 429 RVDDGMRLFREISSKGL---IPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVV 485

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++D    NG + +   +  +M+ ++    I  +N++I         D    +F SL
Sbjct: 486 TYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSL 545

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                KP + T+N MI    K     +A+ +F+KM     TP   TY  +I  +     +
Sbjct: 546 SDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGL 605

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLE 269
             + E+ +E+   G     ST+  +++
Sbjct: 606 ISSVELIEEMKVCGFSADSSTIKMVID 632



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 148/329 (44%), Gaps = 15/329 (4%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA-HLHTRDKAKA 65
           Y  DT  +S L+     +G+   A+ L   M     RPD    + LI    L  R     
Sbjct: 165 YEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGR----- 219

Query: 66  LAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           +++AL    +M   G +   P+ VTY  +L    ++ N      LF+++ E  +   +  
Sbjct: 220 VSEALVLIDRMVEYGFQ---PDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQ 276

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ V+D+  K+G   +  S+ + M+    K D++T++ LI        +D   ++ + ++
Sbjct: 277 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 336

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DN 241
                P + TF+++I  + K     +A+ ++ +M      P  ITY  +I   G+C  + 
Sbjct: 337 GRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID--GFCKENC 394

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +  A ++FD +   G +  + T + ++ +YC      +   LF    + G+ P++ TY  
Sbjct: 395 LHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNT 454

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           L   + ++      ++L + M   G+ P+
Sbjct: 455 LVLGFCQSGKLNAAKELFQEMVSRGVPPS 483



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/299 (20%), Positives = 125/299 (41%), Gaps = 7/299 (2%)

Query: 49  YNALITAHLHTRDKAK------ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
           Y+++  A L  +++ +       +  A+  F+ M    R  P  + +N L  A A+ +  
Sbjct: 57  YSSITEAKLSYKERLRNGIVDIKVNDAIDLFESMI-QSRPLPTPIDFNRLCSAVARTKQY 115

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           D V    K +  + +  D+YT   +++ Y +   +    SVL R      +PD ITF+ L
Sbjct: 116 DLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTL 175

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           ++ +       +   +   ++  K++P L T +++I          +A  +  +M    +
Sbjct: 176 VNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGF 235

Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
            P  +TY  ++       N + A ++F ++ +      V   + ++++ C +G   +A  
Sbjct: 236 QPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALS 295

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           LF      G+  D  TY  L          +   K+L+ M    I+P+   F   ++ F
Sbjct: 296 LFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVF 354



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/312 (18%), Positives = 125/312 (40%), Gaps = 5/312 (1%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ LF  M  S   P P  +N L +A   T+     L    G   ++ G+E    ++ T 
Sbjct: 83  AIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKG--MELNGIEH---DMYTM 137

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
            I++    + + +    ++     +    PD  T++ +++ +   G + E  +++ RM  
Sbjct: 138 TIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVE 197

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
            + +PD++T + LI+    +    +   +   ++    +P   T+  ++    K+     
Sbjct: 198 MKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSAL 257

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  +F+KM       S + Y  +I       +   A  +F+E+   G    V T ++++ 
Sbjct: 258 ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIG 317

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             C +G   +   +        + PD  T+  L   + K       ++L   M   GI P
Sbjct: 318 GLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAP 377

Query: 330 NKRFFLEALETF 341
           +   +   ++ F
Sbjct: 378 DTITYNSLIDGF 389



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 11/160 (6%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  L+  +   G+   A+ +F +M+ S       +YN +I    H    A  +  A   F
Sbjct: 487 YGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIII----HGMCNASKVDDAWSLF 542

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             +  KG+   KP++VTYN+++    +  ++ + + LF+++ E    PD +TYN ++ A+
Sbjct: 543 CSLSDKGV---KPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAH 599

Query: 132 -GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170
            G +G+I  +E ++  MK      D  T  ++ID    R+
Sbjct: 600 LGGSGLISSVE-LIEEMKVCGFSADSSTIKMVIDMLSDRR 638



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 6/145 (4%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQK R  +   GIY+ +I  M    +   A  LF  + + G +PD   YN +I       
Sbjct: 510 MQKSRMTLG-IGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLC--- 565

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K  +L++A   F+KMK  + C P+  TYNIL+RA      +     L +E+     + D
Sbjct: 566 -KKGSLSEADMLFRKMKE-DGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSAD 623

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLS 145
             T   V+D      + K    +LS
Sbjct: 624 SSTIKMVIDMLSDRRLDKSFLDMLS 648


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 158/328 (48%), Gaps = 9/328 (2%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           + Y+ D   Y  LI  + K GQ + A+ L  EM  S  +P+  +Y+ALI        K  
Sbjct: 154 QGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLC----KDG 209

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            ++ ALG   ++ G      + VTYN L+  C       +V  L  ++    + PD YT+
Sbjct: 210 FVSDALGLCSQI-GERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTF 268

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++DA  K G I E + VL+ M     KPDI+T+N L++ Y  R+   +  ++F  ++ 
Sbjct: 269 NILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVK 328

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--V 242
              +P +  +N +I  Y K ++  +A  +F+++      P+  +Y  +I   G C++  +
Sbjct: 329 RGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLID--GLCNSGRI 386

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           S  +++ DE+    +   V T N +++A C  G   EA  +       GV P+  TY  +
Sbjct: 387 SHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAM 446

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
              Y   N   + + +  RM ++G+ P+
Sbjct: 447 MDGYCLRNNVNVAKDIFNRMVKSGLEPD 474



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 149/332 (44%), Gaps = 10/332 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  +R    D   Y+ L+     +     A  LF+ M   G  PD   YN LI  +    
Sbjct: 290 MMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYC--- 346

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K K + +A+  F+++   +   P I +YN L+     +  +  V  L  E+H S   PD
Sbjct: 347 -KTKMVDEAMVLFKELCN-KNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPD 404

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TYN ++DA  K G I E   VL  M     KP+I+T+N ++D Y  R   +  + +F 
Sbjct: 405 VVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFN 464

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++ S  +P +  +N +I  Y K  +  +A  +F++M      P   +Y  +I   G C+
Sbjct: 465 RMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLID--GLCN 522

Query: 241 --NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              +   +E+ DE+   G+   V T N +L+A+C      +A  LF      G+ PD  T
Sbjct: 523 LGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYT 581

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              +     K    ++ +  LK +  +G  PN
Sbjct: 582 NHAIVDNLCKGEKLKMAEDALKHLLMHGCSPN 613



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 152/323 (47%), Gaps = 10/323 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ LI  + K+G+   A  + + M   G +PD   YNAL+  +    +    + +A
Sbjct: 264 DDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSREN----VHEA 319

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F +M  +G+E   P+++ YN+L+    + + VD+   LFKEL    L P I +YN +
Sbjct: 320 RELFNRMVKRGLE---PDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSL 376

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D    +G I  ++ +L  M  +   PD++T+N+LID+  K     +   V   +M    
Sbjct: 377 IDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGV 436

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           KP + T+N+M+  Y        A+ +F +M      P  + Y  +I  Y   + V  A  
Sbjct: 437 KPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIV 496

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F E+        +++ N++++  C  G       L +   + G +PD  TY +L  A+ 
Sbjct: 497 LFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFC 556

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           K    +    L +++ + GI P+
Sbjct: 557 KTQPFDKAISLFRQIVE-GIWPD 578



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 150/339 (44%), Gaps = 10/339 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  +   G+      L  EM  S   PD   YN LI A      K   + +ALG  
Sbjct: 373 YNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALC----KEGRILEALGVL 428

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             M  KG+   KPNIVTYN ++       NV+    +F  + +S L PDI  YN +++ Y
Sbjct: 429 VMMMKKGV---KPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGY 485

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K  M+ E   +   M+     PDI ++N LID          ++++   +  S + P +
Sbjct: 486 CKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDV 545

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+N ++  + K +   KA  +F+++    + P F T   I+      + +  A +    
Sbjct: 546 ITYNILLDAFCKTQPFDKAISLFRQIVEGIW-PDFYTNHAIVDNLCKGEKLKMAEDALKH 604

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           L   G    V T   ++ A C +G   EA LL     +    PD+ T++++     + N 
Sbjct: 605 LLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNE 664

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
            +  +KL + M   G+V  ++   ++   F  + +G QS
Sbjct: 665 TDKAEKLREEMIARGLVNIEKSLNQSHNVFFPASSGFQS 703



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 155/362 (42%), Gaps = 54/362 (14%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA---LA 67
           T ++ KL+  + + G    A+ LF+++++ G  P  + +  LI  + H    A A   LA
Sbjct: 55  TSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLA 114

Query: 68  KAL--GYFQKMKGMERCKPNIVTYNILLRA-C----------------AQARNVDQ---- 104
             L  GY          +PN+VT+N ++   C                AQ    DQ    
Sbjct: 115 TILKSGY----------QPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYG 164

Query: 105 --VNA------------LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
             +N             L +E+ +S + P++  Y+ ++D   K+G + +   + S++   
Sbjct: 165 TLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGER 224

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
               D +T+N LID       + ++ Q+   ++     P   TFN +I    K     +A
Sbjct: 225 GILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEA 284

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAML 268
           + V   M+     P  +TY  +  M GYC  +NV  ARE+F+ + K G +  V   N ++
Sbjct: 285 QGVLAMMSKRGEKPDIVTYNAL--MEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLI 342

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           + YC   +  EA +LF+   N  + P  ++Y  L      +     V+KLL  M  +   
Sbjct: 343 DGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQP 402

Query: 329 PN 330
           P+
Sbjct: 403 PD 404



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 6/181 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + +  I D   Y+ LI  +   G+      L  EM +SG  PD   YN L+ A      K
Sbjct: 502 RHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFC----K 557

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +   KA+  F+++  +E   P+  T + ++    +   +       K L     +P++ 
Sbjct: 558 TQPFDKAISLFRQI--VEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQ 615

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  +++A  K+G   E   +LS+M+ N   PD ITF ++I    +R   DK E++ + +
Sbjct: 616 TYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEM 675

Query: 183 M 183
           +
Sbjct: 676 I 676



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/268 (20%), Positives = 104/268 (38%), Gaps = 15/268 (5%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           ++  G+FQ     + C+                RNVD     F  +      P    ++ 
Sbjct: 16  SRFFGHFQPQNPHKNCR---------------FRNVDDAVTCFNRMVRVFPPPPTSVFDK 60

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++ A  + G      S+ ++++S    P I TF +LI+ Y  +        +  +++ S 
Sbjct: 61  LLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSG 120

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P L TFN++I  +    +  KA    Q + A  Y     TY  +I        +  A 
Sbjct: 121 YQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAAL 180

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+ K      +   +A+++  C +G  ++A  L       G+  D+ TY  L    
Sbjct: 181 HLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGC 240

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFF 334
                 + V +LL +M +  + P+   F
Sbjct: 241 CSVGRWQEVTQLLTKMVRENVDPDDYTF 268



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 119/288 (41%), Gaps = 5/288 (1%)

Query: 58  HTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
           H   + + +  A+  F +M  +    P  V ++ LL A  +  +     +LF +L    +
Sbjct: 28  HKNCRFRNVDDAVTCFNRMVRVFPPPPTSV-FDKLLGAIVRMGHYPTAISLFTQLQSKGI 86

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
           +P I T+  +++ Y          S+L+ +  +  +P+++TFN +I+ +       K   
Sbjct: 87  SPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALD 146

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
             ++L+         T+ ++I    K      A ++ Q+M      P+ + Y  +I   G
Sbjct: 147 FCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALID--G 204

Query: 238 YCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
            C +  VS A  +  ++ + G  +   T N++++  C  G   E   L        V PD
Sbjct: 205 LCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPD 264

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
             T+ +L  A  K       Q +L  M + G  P+   +   +E + S
Sbjct: 265 DYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCS 312


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 149/317 (47%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI  + K G+   A+ LF +M   GC+PD   YN +I        K    A A G  
Sbjct: 166 FTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLC----KIGETAAAAGLL 221

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KM+    C+PN+VTY+ L+ +  + R V++   +F  +    ++PDI+TY  ++    K
Sbjct: 222 KKMEE-AGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCK 280

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
               KE  ++L+ M S    PDI+TFN+L+D++ K     +   V K++     +P + T
Sbjct: 281 FSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVT 340

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           ++S++  Y       +A  +F  M      P+  +Y  +I  Y     +  A ++F+E+ 
Sbjct: 341 YSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMI 400

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G      + N ++  +C  G   EA  LF N    G  PD  TY +L   + K     
Sbjct: 401 HQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLG 460

Query: 314 LVQKLLKRMEQNGIVPN 330
              +L + M+   + PN
Sbjct: 461 KAFRLFRAMQSTYLKPN 477



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 157/327 (48%), Gaps = 9/327 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I  + K G+T  A  L  +M  +GC+P+   Y+ LI +    RD+    A  
Sbjct: 197 DVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSL--CRDRLVNEALD 254

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +  + K KG+    P+I TY  L++   +     + +AL  E+    + PDI T+N ++D
Sbjct: 255 IFSYMKAKGIS---PDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVD 311

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            + K G + E   VL  M     +P+++T++ L+  Y       +  ++F  ++    KP
Sbjct: 312 TFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKP 371

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRARE 247
            + ++N +I  Y KA+   +A  +F +M     TP+ ++Y  +I  +G+C    +  A++
Sbjct: 372 NIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLI--HGFCQLGKLREAQD 429

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F  +   G    + T + +L+ +C  G   +A  LF    +  + P+   Y +L  A  
Sbjct: 430 LFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMC 489

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFF 334
           K+   +  +KL   +   G+ P+ + +
Sbjct: 490 KSGNHKDARKLFSELFVQGLQPHVQLY 516



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 143/323 (44%), Gaps = 5/323 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI  + K  + + A  L +EM +    PD   +N L+     T  K   +++A
Sbjct: 267 DIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLV----DTFCKEGKVSEA 322

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           LG  + M  M   +PN+VTY+ L+   +   +V +   LF  +      P+I++YN +++
Sbjct: 323 LGVLKTMTEMG-VEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILIN 381

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y K   I E   + + M      P+ +++N LI  + +     + + +F+++  +   P
Sbjct: 382 GYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLP 441

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            L T++ ++  + K    GKA  +F+ M +    P+ + Y  ++       N   AR++F
Sbjct: 442 DLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLF 501

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            EL   G    V     ++   C  GL  EA   F N    G  PD  +Y ++ +   + 
Sbjct: 502 SELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQH 561

Query: 310 NMKELVQKLLKRMEQNGIVPNKR 332
             +     L+  M   G + + R
Sbjct: 562 KDESRALLLVGEMRDRGFIADVR 584



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 114/248 (45%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P IVT+  L+    +     Q   LF ++      PD+YTYN +++   K G       
Sbjct: 160 QPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAG 219

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +L +M+   C+P+++T++ LIDS  + +  ++   +F  +      P + T+ S+I    
Sbjct: 220 LLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLC 279

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           K     +A  +  +MT++   P  +T+  ++  +     VS A  +   ++++G +  V 
Sbjct: 280 KFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVV 339

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T ++++  Y +     EA  LF      G  P+  +Y +L   Y KA   +   +L   M
Sbjct: 340 TYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEM 399

Query: 323 EQNGIVPN 330
              G+ PN
Sbjct: 400 IHQGLTPN 407



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 114/250 (45%), Gaps = 6/250 (2%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           PNI T +I +    Q + VD   ++  ++ +  L P I T+  +++   K G   +   +
Sbjct: 126 PNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVEL 185

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
              M +  C+PD+ T+N +I+   K         + K +  +  +P + T++++I +  +
Sbjct: 186 FDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCR 245

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE---IFDELSKLGKDMK 260
            RL  +A  +F  M A   +P   TY  +I   G C   SR +E   + +E++ L     
Sbjct: 246 DRLVNEALDIFSYMKAKGISPDIFTYTSLIQ--GLC-KFSRWKEASALLNEMTSLNIMPD 302

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           + T N +++ +C  G  +EA  + +    MGV P+  TY  L   Y+        +KL  
Sbjct: 303 IVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFH 362

Query: 321 RMEQNGIVPN 330
            M   G  PN
Sbjct: 363 VMITKGCKPN 372



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 105/248 (42%), Gaps = 1/248 (0%)

Query: 95  ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR-MKSNQCK 153
           A +  RN+D   A F  +      P I  +  ++ A  K G   ++   LS+ M+     
Sbjct: 66  ASSSFRNIDDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLS 125

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P+I T ++ ++ + + Q  D    V   ++    +PT+ TF ++I    K     +A  +
Sbjct: 126 PNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVEL 185

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F  M A    P   TY  II         + A  +  ++ + G    + T + ++++ C 
Sbjct: 186 FDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCR 245

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
           + L  EA  +F      G++PD  TY  L +   K +  +    LL  M    I+P+   
Sbjct: 246 DRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVT 305

Query: 334 FLEALETF 341
           F   ++TF
Sbjct: 306 FNVLVDTF 313


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 150/339 (44%), Gaps = 5/339 (1%)

Query: 6   WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA 65
           W       Y  LI  + +  +   A  L  EM    C PD +VYN LI A L    K  A
Sbjct: 87  WCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLI-AGLCKMGKIDA 145

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
               L    KM     C P+++TY  L+  C Q   +D+   L +++ ES L PD   YN
Sbjct: 146 ARNVL----KMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYN 201

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++   K   ++E+  +L  M     +PD  ++N ++    +   +++  ++ + ++  
Sbjct: 202 ALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEK 261

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
           K  P + T+NS++  + K     +AE + + M   +  P+ ITY  +I  +   D ++ A
Sbjct: 262 KCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADA 321

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             + +++ K G    + T N +L+  C  G   EA  L E        PD  TY +L   
Sbjct: 322 YRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNG 381

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             K    +  + LL+ M + G  PN   F   ++ F  +
Sbjct: 382 LCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKA 420



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 161/372 (43%), Gaps = 50/372 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ LIA + K G+   A  +   M    C PD   Y +LI     T     AL +A
Sbjct: 126 DAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQT----NALDEA 181

Query: 70  LGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
               +KMK  G+    P+ V YN LL    +   +++V+ L +E+ E+   PD ++YN V
Sbjct: 182 RKLMEKMKESGL---TPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTV 238

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +    ++G  +E   +L +M   +C PD++T+N L+D + K    D+ E++ + ++  + 
Sbjct: 239 VACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRC 298

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI--------------- 232
            PT+ T+ ++I  + +A     A  V + M     +P  +TY C+               
Sbjct: 299 APTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHE 358

Query: 233 ------------------ITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
                             I + G C    V  AR + + + + G    + T N M++ +C
Sbjct: 359 LLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFC 418

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             G   E   + E    +  TPD  TY  L   Y KAN  +    +L      GI P+K 
Sbjct: 419 KAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL------GISPDKA 472

Query: 333 FFLEALETFSSS 344
            +   LE   S+
Sbjct: 473 SYSSMLEGLCST 484



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 162/399 (40%), Gaps = 69/399 (17%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  Y+ ++A + + G+   A  +  +M    C PD   YN+L+        K   + +A
Sbjct: 231 DTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFC----KVSKMDEA 286

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               + M G  RC P ++TY  L+   ++A  +     + +++ ++ ++PD+ TYN ++D
Sbjct: 287 ERLLEDMVG-RRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLD 345

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K G ++E   +L  M    C PD++T+++L++   K    D    + + ++    +P
Sbjct: 346 GLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQP 405

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY------------- 236
            L TFN+MI  + KA    +   V + M  +  TP  +TY  +I  Y             
Sbjct: 406 NLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL 465

Query: 237 --------------GYCDN--VSRAREIFDELSKLG--------------------KDMK 260
                         G C    V  A+E+ D ++K G                     D  
Sbjct: 466 GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEA 525

Query: 261 VSTLNAMLEAYCMNGLPTEADLL--------FENSHNM-------GVTPDSSTYKLLYKA 305
           +  L  M E  C   L T + L+         E++ N+       G  PD +TY  L   
Sbjct: 526 LKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDG 585

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           + K N  +   +  K M  +G  P+K  +   +  F  S
Sbjct: 586 FCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQS 624



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 137/319 (42%), Gaps = 11/319 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI    + G +++ + + +EM      PD   +N ++ A+    D    L +AL +F
Sbjct: 27  YGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGD----LDRALSHF 82

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
              +G   C P   TY IL+    Q + +D+   L  E+ +    PD   YN ++    K
Sbjct: 83  ---RGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCK 139

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G I    +VL  M    C PD+IT+  LI    +  A D+  ++ + +  S   P    
Sbjct: 140 MGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVA 199

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL- 252
           +N+++    K     +   + ++M      P   +Y  ++           A +I +++ 
Sbjct: 200 YNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMI 259

Query: 253 -SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
             K G D  V T N++++ +C      EA+ L E+       P   TY  L   +++A+ 
Sbjct: 260 EKKCGPD--VVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADR 317

Query: 312 KELVQKLLKRMEQNGIVPN 330
                ++++ M + GI P+
Sbjct: 318 LADAYRVMEDMFKAGISPD 336



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 150/363 (41%), Gaps = 42/363 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    +  +   A  +  +M  +G  PD   YN L+        KA  L +A    
Sbjct: 305 YTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLC----KAGKLEEAHELL 360

Query: 74  QKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           + M  +E+ C P++VTY+IL+    +   VD    L + + E    P++ T+N ++D + 
Sbjct: 361 EVM--VEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFC 418

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G + E   VL  MK   C PD++T++ LID Y K    ++M+  F  L  S +K +  
Sbjct: 419 KAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKA---NRMQDAFAILGISPDKASYS 475

Query: 193 TFNSMIINYGKARL----------QG----------------------KAEYVFQKMTAM 220
           +    + + GK             QG                      +A  + Q M+  
Sbjct: 476 SMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSER 535

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
              P+  TY  +I        V  A  + D + + G    V+T  ++++ +C       A
Sbjct: 536 GCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAA 595

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALET 340
              F+   + G  PD   Y +L   + ++   E   ++++ M + G  P+   +   + +
Sbjct: 596 YQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRS 655

Query: 341 FSS 343
            ++
Sbjct: 656 LTT 658



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 128/314 (40%), Gaps = 11/314 (3%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
            F E  +   +P  S Y ALIT      +    L  A     +     R  P+++T+N +
Sbjct: 11  FFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLAR-----RFSPDVITHNTI 65

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           L+A  Q  ++D+  + F+   +   +P  +TY  ++    +   I E   +L  M    C
Sbjct: 66  LKAYCQIGDLDRALSHFR--GKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDC 123

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            PD   +N LI    K    D    V K ++     P + T+ S+I+   +     +A  
Sbjct: 124 HPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARK 183

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
           + +KM     TP  + Y  ++   G C  + +    ++ +E+ + G++    + N ++  
Sbjct: 184 LMEKMKESGLTPDTVAYNALLN--GLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVAC 241

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            C +G   EA  + E        PD  TY  L   + K +  +  ++LL+ M      P 
Sbjct: 242 LCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPT 301

Query: 331 KRFFLEALETFSSS 344
              +   +  FS +
Sbjct: 302 VITYTTLIGGFSRA 315



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/330 (21%), Positives = 131/330 (39%), Gaps = 40/330 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT--AHLHTRDKAKALA 67
           D   Y+ L+  + K G+   A  L   M    C PD   Y+ L+     L   D A+ L 
Sbjct: 336 DLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLL 395

Query: 68  KALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           + +        +ER C+PN+VT+N ++    +A  VD+ + + + + E    PD+ TY+ 
Sbjct: 396 EMM--------LERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYST 447

Query: 127 VMDAYGK-----------------------------NGMIKEMESVLSRMKSNQCKPDII 157
           ++D Y K                              G ++E + V+  M    C P   
Sbjct: 448 LIDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSS 507

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
            + L+I      +  D+  ++ + +     +P L T++ +I    K +    A  V   M
Sbjct: 508 HYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVM 567

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
                 P   TY  +I  +   + +  A + F  +   G +      N ++  +C +G  
Sbjct: 568 LEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNV 627

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
            +A  + +     G  PD++TY  L ++ T
Sbjct: 628 EKAIEVMQLMLEKGCNPDAATYFSLMRSLT 657



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 90/224 (40%), Gaps = 2/224 (0%)

Query: 107 ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
           + F+E       P   TY  ++  + + G  K +  + + M + +  PD+IT N ++ +Y
Sbjct: 10  SFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAY 69

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
            +    D+    F+  M     PT  T+  +I    + +   +A  +  +M      P  
Sbjct: 70  CQIGDLDRALSHFRGKMWC--SPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDA 127

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
             Y C+I        +  AR +   + +      V T  +++   C      EA  L E 
Sbjct: 128 AVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEK 187

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
               G+TPD+  Y  L     K N  E V KLL+ M + G  P+
Sbjct: 188 MKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPD 231



 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 7/93 (7%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++  + D   Y+ LI    K  +   A   F  MR+SGC PD   YN LI+    + +  
Sbjct: 569 EKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGN-- 626

Query: 64  KALAKALGYFQKMKGMER-CKPNIVTYNILLRA 95
             + KA+   Q M  +E+ C P+  TY  L+R+
Sbjct: 627 --VEKAIEVMQLM--LEKGCNPDAATYFSLMRS 655


>gi|302816774|ref|XP_002990065.1| hypothetical protein SELMODRAFT_130980 [Selaginella moellendorffii]
 gi|300142185|gb|EFJ08888.1| hypothetical protein SELMODRAFT_130980 [Selaginella moellendorffii]
          Length = 458

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 154/333 (46%), Gaps = 7/333 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           ++ Q+WY    G Y +L+ ++GK  +   A  LF  M   GC P    + AL++A+    
Sbjct: 47  LRSQQWYQPYAGTYIRLLEMLGKCKRPDEAASLFQTMLADGCGPSREAFTALMSAYT--- 103

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  ++ A+   Q M     C P++ TY++L+++C     + + + L  ++    + P+
Sbjct: 104 -RSNLMSTAMEVLQAMNATPHCSPDVFTYSLLIKSCCDCGQLSRASDLLADMTARGIQPN 162

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM---KSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
             TYN ++DAY K+G + ++  +  +M    S  C+PD  + N ++  +G R    +ME+
Sbjct: 163 RVTYNIILDAYAKSGSLDKLHDLALQMLQSPSPSCRPDHWSRNAIVKGFGNRGDIRRMEE 222

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
            F+ L    + P   T +S++  Y KA +  K   V + +    Y    +TY  +I  YG
Sbjct: 223 WFQRLTTPSDGPDSLTLHSLMAAYAKAEMFDKMHAVVRYIHRYHYQVDAVTYNILINAYG 282

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
                ++  + F  +   G      T   ++  Y   G+  +   L E      V PD++
Sbjct: 283 RAGRKTQMLKTFTSMKCGGVRPDSVTYCTLINFYGKFGMQRKLPRLLEQMSMHKVQPDTA 342

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            Y  +  AY +A+    + +    M++ G  P+
Sbjct: 343 LYNSVLDAYRRASDISSIDRYFAAMQEQGCKPD 375



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/312 (19%), Positives = 125/312 (40%), Gaps = 39/312 (12%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL  F+ ++  +  +P   TY  LL    + +  D+  +LF+ +      P    +  +M
Sbjct: 40  ALKVFELLRSQQWYQPYAGTYIRLLEMLGKCKRPDEAASLFQTMLADGCGPSREAFTALM 99

Query: 129 DAYGKNGMIKEMESVLSRMKSN-QCKPDI------------------------------- 156
            AY ++ ++     VL  M +   C PD+                               
Sbjct: 100 SAYTRSNLMSTAMEVLQAMNATPHCSPDVFTYSLLIKSCCDCGQLSRASDLLADMTARGI 159

Query: 157 ----ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE---KPTLPTFNSMIINYGKARLQGK 209
               +T+N+++D+Y K  + DK+  +   ++ S     +P   + N+++  +G      +
Sbjct: 160 QPNRVTYNIILDAYAKSGSLDKLHDLALQMLQSPSPSCRPDHWSRNAIVKGFGNRGDIRR 219

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
            E  FQ++T     P  +T   ++  Y   +   +   +   + +    +   T N ++ 
Sbjct: 220 MEEWFQRLTTPSDGPDSLTLHSLMAAYAKAEMFDKMHAVVRYIHRYHYQVDAVTYNILIN 279

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           AY   G  T+    F +    GV PDS TY  L   Y K  M+  + +LL++M  + + P
Sbjct: 280 AYGRAGRKTQMLKTFTSMKCGGVRPDSVTYCTLINFYGKFGMQRKLPRLLEQMSMHKVQP 339

Query: 330 NKRFFLEALETF 341
           +   +   L+ +
Sbjct: 340 DTALYNSVLDAY 351



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 3/172 (1%)

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY-VFQKMTAMK-YTPSFITYECII 233
           E   +  M  K    LP+    I++    R Q +A   VF+ + + + Y P   TY  ++
Sbjct: 5   EASLRKSMARKASKLLPSSLLDILSDRIQRGQWEAALKVFELLRSQQWYQPYAGTYIRLL 64

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA-DLLFENSHNMGV 292
            M G C     A  +F  +   G         A++ AY  + L + A ++L   +     
Sbjct: 65  EMLGKCKRPDEAASLFQTMLADGCGPSREAFTALMSAYTRSNLMSTAMEVLQAMNATPHC 124

Query: 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           +PD  TY LL K+            LL  M   GI PN+  +   L+ ++ S
Sbjct: 125 SPDVFTYSLLIKSCCDCGQLSRASDLLADMTARGIQPNRVTYNIILDAYAKS 176


>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
          Length = 766

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 148/314 (47%), Gaps = 11/314 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+     D   Y+ LI+   ++   + A  +F EM+ SG  PD   +N+L+  +   R  
Sbjct: 217 KEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRH 276

Query: 63  AKALAKALGYFQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +A+       + ++ MER  C P++VTYN L+ +  +   ++Q  AL +E+    + PD
Sbjct: 277 DEAI-------EVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPD 329

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TY  ++    + G I         M  N CKP++ T+N LI  +G R  F +M  VF 
Sbjct: 330 VVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFD 389

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
               +   P + T+N+++  +G+  L  +   VF++M    Y P   TY  +I+ Y  C 
Sbjct: 390 EFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCG 449

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
               A +I+  + + G    VST NA+L A    G   +A+ LF         PD  +Y 
Sbjct: 450 LFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYS 509

Query: 301 LLYKAYTKANMKEL 314
            L  AY  AN K L
Sbjct: 510 SLLHAY--ANAKRL 521



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 142/321 (44%), Gaps = 4/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D G Y+ L++   + G+ R A+ +F  M +SG +P    YN +    LH   K     K 
Sbjct: 153 DAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVV----LHVYSKMAVPWKE 208

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +             P+  TYN L+  C +     +   +F E+  S   PD  T+N ++D
Sbjct: 209 VVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLD 268

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK     E   V+  M+   C P ++T+N LI SY K    ++   + + +     KP
Sbjct: 269 VYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKP 328

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ ++I    +A     A   + +M      P+  TY  +I M+G          +F
Sbjct: 329 DVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVF 388

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE    G    + T N +L  +  NGL +E   +F+     G  P+  TY  L  +Y++ 
Sbjct: 389 DEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRC 448

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
            + +L  ++ KRM + GI P+
Sbjct: 449 GLFDLAMQIYKRMMEAGIYPD 469



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 160/331 (48%), Gaps = 10/331 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           + +  I VM + G+   A    S + ++   PD   Y AL++A      +A     A+  
Sbjct: 125 VLATAIRVMARAGRLAEA----SALLDAAPGPDAGAYTALVSAF----SRAGRFRDAVAV 176

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           F++M      +P IVTYN++L   ++ A    +V  L   + E  +APD YTYN ++   
Sbjct: 177 FRRMVD-SGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCC 235

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            +  + KE   V   MK++  +PD +TFN L+D YGK +  D+  +V + +      P++
Sbjct: 236 RRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSV 295

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+NS+I +Y K  L  +A  + Q+M      P  +TY  +I+       +  A   +DE
Sbjct: 296 VTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDE 355

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G    + T NA+++ + + G   E   +F+   + G  PD  T+  L   + +  +
Sbjct: 356 MVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGL 415

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
              V  + K M++ G +P +  ++  + ++S
Sbjct: 416 DSEVSGVFKEMKKAGYIPERDTYVSLISSYS 446



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 157/402 (39%), Gaps = 75/402 (18%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+ + + G+   A+  + EM  +GC+P+   YNALI  H   R K   +   
Sbjct: 329 DVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMH-GVRGKFPEMMAV 387

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH---------------- 113
              F+    +    P+IVT+N LL    Q     +V+ +FKE+                 
Sbjct: 388 FDEFRSAGFV----PDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLIS 443

Query: 114 -------------------ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
                              E+ + PD+ TYN V+ A  + G  ++ E + + M+   CKP
Sbjct: 444 SYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKP 503

Query: 155 DIITFNLLIDSYGKRQAFDKM-----------------------------------EQVF 179
           D  +++ L+ +Y   +  DKM                                   E+ F
Sbjct: 504 DEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAF 563

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             L   +    +   N+M+  YGK R+  K E +   M       S  TY  ++ MY   
Sbjct: 564 LELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRL 623

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            +  +   I  E+   G      + N ++ AY   G   EA  LF      G+ PD  TY
Sbjct: 624 GDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTY 683

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            +  K+Y   +M E   +L++ M   G  PN+R +   +E +
Sbjct: 684 NIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGY 725



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 130/279 (46%), Gaps = 9/279 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALA 67
           D   Y+ +++ + + G+   A  LF+EM    C+PD   Y++L+ A+ + +  DK KAL+
Sbjct: 469 DVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALS 528

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
             +         ER +P+      L+   ++  N+ +    F EL +   + DI   N +
Sbjct: 529 DDIY-------SERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAM 581

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  YGKN M++++E +LS MK +       T+N L+  Y +    +K E +   +  S  
Sbjct: 582 VSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGV 641

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P   ++N++I  YG+     +A  +F +M      P  +TY   +  Y        A E
Sbjct: 642 RPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIE 701

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           +   +   G      T N+++E YC NG  T+A +   N
Sbjct: 702 LVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSN 740



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 67/134 (50%), Gaps = 5/134 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+ +  + G       + +E+++SG RPD   YN +I A+     +   + +A   F
Sbjct: 613 YNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAY----GRKGQMKEASRLF 668

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +MK     KP++VTYNI +++       ++   L + +      P+  TYN +++ Y +
Sbjct: 669 SEMK-CSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCR 727

Query: 134 NGMIKEMESVLSRM 147
           NG + + +  +S +
Sbjct: 728 NGKLTDAKIFVSNL 741


>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
 gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
          Length = 784

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 148/314 (47%), Gaps = 11/314 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+     D   Y+ LI+   ++   + A  +F EM+ SG  PD   +N+L+  +   R  
Sbjct: 235 KEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRH 294

Query: 63  AKALAKALGYFQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +A+       + ++ MER  C P++VTYN L+ +  +   ++Q  AL +E+    + PD
Sbjct: 295 DEAI-------EVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPD 347

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TY  ++    + G I         M  N CKP++ T+N LI  +G R  F +M  VF 
Sbjct: 348 VVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFD 407

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
               +   P + T+N+++  +G+  L  +   VF++M    Y P   TY  +I+ Y  C 
Sbjct: 408 EFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCG 467

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
               A +I+  + + G    VST NA+L A    G   +A+ LF         PD  +Y 
Sbjct: 468 LFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYS 527

Query: 301 LLYKAYTKANMKEL 314
            L  AY  AN K L
Sbjct: 528 SLLHAY--ANAKRL 539



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 142/321 (44%), Gaps = 4/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D G Y+ L++   + G+ R A+ +F  M +SG +P    YN +    LH   K     K 
Sbjct: 171 DAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVV----LHVYSKMAVPWKE 226

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +             P+  TYN L+  C +     +   +F E+  S   PD  T+N ++D
Sbjct: 227 VVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLD 286

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK     E   V+  M+   C P ++T+N LI SY K    ++   + + +     KP
Sbjct: 287 VYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKP 346

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ ++I    +A     A   + +M      P+  TY  +I M+G          +F
Sbjct: 347 DVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVF 406

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE    G    + T N +L  +  NGL +E   +F+     G  P+  TY  L  +Y++ 
Sbjct: 407 DEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRC 466

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
            + +L  ++ KRM + GI P+
Sbjct: 467 GLFDLAMQIYKRMMEAGIYPD 487



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 160/331 (48%), Gaps = 10/331 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           + +  I VM + G+   A    S + ++   PD   Y AL++A      +A     A+  
Sbjct: 143 VLATAIRVMARAGRLAEA----SALLDAAPGPDAGAYTALVSAF----SRAGRFRDAVAV 194

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           F++M      +P IVTYN++L   ++ A    +V  L   + E  +APD YTYN ++   
Sbjct: 195 FRRMVD-SGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCC 253

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            +  + KE   V   MK++  +PD +TFN L+D YGK +  D+  +V + +      P++
Sbjct: 254 RRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSV 313

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+NS+I +Y K  L  +A  + Q+M      P  +TY  +I+       +  A   +DE
Sbjct: 314 VTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDE 373

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G    + T NA+++ + + G   E   +F+   + G  PD  T+  L   + +  +
Sbjct: 374 MVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGL 433

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
              V  + K M++ G +P +  ++  + ++S
Sbjct: 434 DSEVSGVFKEMKKAGYIPERDTYVSLISSYS 464



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 157/402 (39%), Gaps = 75/402 (18%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+ + + G+   A+  + EM  +GC+P+   YNALI  H   R K   +   
Sbjct: 347 DVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMH-GVRGKFPEMMAV 405

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH---------------- 113
              F+    +    P+IVT+N LL    Q     +V+ +FKE+                 
Sbjct: 406 FDEFRSAGFV----PDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLIS 461

Query: 114 -------------------ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
                              E+ + PD+ TYN V+ A  + G  ++ E + + M+   CKP
Sbjct: 462 SYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKP 521

Query: 155 DIITFNLLIDSYGKRQAFDKM-----------------------------------EQVF 179
           D  +++ L+ +Y   +  DKM                                   E+ F
Sbjct: 522 DEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAF 581

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             L   +    +   N+M+  YGK R+  K E +   M       S  TY  ++ MY   
Sbjct: 582 LELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRL 641

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            +  +   I  E+   G      + N ++ AY   G   EA  LF      G+ PD  TY
Sbjct: 642 GDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTY 701

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            +  K+Y   +M E   +L++ M   G  PN+R +   +E +
Sbjct: 702 NIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGY 743



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 130/279 (46%), Gaps = 9/279 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALA 67
           D   Y+ +++ + + G+   A  LF+EM    C+PD   Y++L+ A+ + +  DK KAL+
Sbjct: 487 DVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALS 546

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
             +         ER +P+      L+   ++  N+ +    F EL +   + DI   N +
Sbjct: 547 DDIY-------SERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAM 599

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  YGKN M++++E +LS MK +       T+N L+  Y +    +K E +   +  S  
Sbjct: 600 VSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGV 659

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P   ++N++I  YG+     +A  +F +M      P  +TY   +  Y        A E
Sbjct: 660 RPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIE 719

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           +   +   G      T N+++E YC NG  T+A +   N
Sbjct: 720 LVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSN 758



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 67/134 (50%), Gaps = 5/134 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+ +  + G       + +E+++SG RPD   YN +I A+     +   + +A   F
Sbjct: 631 YNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAY----GRKGQMKEASRLF 686

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +MK     KP++VTYNI +++       ++   L + +      P+  TYN +++ Y +
Sbjct: 687 SEMK-CSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCR 745

Query: 134 NGMIKEMESVLSRM 147
           NG + + +  +S +
Sbjct: 746 NGKLTDAKIFVSNL 759


>gi|302768589|ref|XP_002967714.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
 gi|300164452|gb|EFJ31061.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
          Length = 384

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 156/322 (48%), Gaps = 5/322 (1%)

Query: 23  KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82
           +K +   A+ L   M+ SG +PD  +YN L+   +++  + +A  K L   ++    ++ 
Sbjct: 30  QKSKLDHALRLLEVMKESGKKPDEILYNCLVNGLVNS-GRLEAAEKILDDMKR----DKV 84

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
             N+VTY  L++  A    +     LF+E+ +   +P+ +TYN ++  YG+ G+ KE   
Sbjct: 85  SANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALE 144

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +   M    C  D+ T+N+ I  YGKR   + ME++   +      P   T+N+++  Y 
Sbjct: 145 LYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYA 204

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           K     KA  + ++MT   Y P+  TY  +++      +V+ A ++F+ L   G    + 
Sbjct: 205 KKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIV 264

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T +AML  Y  +GL TEA  L++     G  P    Y  L ++Y    M +      + M
Sbjct: 265 TYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDM 324

Query: 323 EQNGIVPNKRFFLEALETFSSS 344
            ++GIVP+ + +   ++ +  +
Sbjct: 325 RKSGIVPDTKIYTALMDAYGKA 346



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 142/299 (47%), Gaps = 9/299 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI      G+ +    LF EM++ G  P+   YNALI  +     +     +AL  +
Sbjct: 91  YTNLIKEYANTGRLQDCRKLFQEMKDKGESPNSWTYNALIQGY----GRKGLFKEALELY 146

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M G+  C  ++ TYNI +    +   ++ +  L  E+    + PD  TYN ++D Y K
Sbjct: 147 DEMDGV-GCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAK 205

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
                +   +L  M     +P+I T+N+++ S  K Q+  +  Q+F++L      P + T
Sbjct: 206 KSYFVKAHEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVT 265

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +++M+  YG+  L  +A  ++ +M      P  I Y  +I  YG+      A   F ++ 
Sbjct: 266 YSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMR 325

Query: 254 KLG--KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           K G   D K+ T  A+++AY   G   EA+LL+      G  PD  TY +L +A+  A 
Sbjct: 326 KSGIVPDTKIYT--ALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYGILVRAFANAG 382



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 108/227 (47%), Gaps = 5/227 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+  IA+ GK+G       L  EM   G  PD   YN L+  +     K     KA
Sbjct: 157 DVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYA----KKSYFVKA 212

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               ++M      +PNI TYNI+L +  + ++V +   LF+ L    + P+I TY+ ++ 
Sbjct: 213 HEILREMTEAGY-RPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLS 271

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YG++G+  E   +   M    C P II ++ LI+SYG    + +    F+ +  S   P
Sbjct: 272 LYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVP 331

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
               + +++  YGKA    +AE ++ +MT   + P  ITY  ++  +
Sbjct: 332 DTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYGILVRAF 378



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 40/164 (24%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K +  + +   YS ++++ G+ G    A  L+ EM  +GC P    Y+ LI ++ H    
Sbjct: 255 KSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHH--- 311

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
                   G +Q                             +  A F+++ +S + PD  
Sbjct: 312 --------GMYQ-----------------------------EALACFQDMRKSGIVPDTK 334

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
            Y  +MDAYGK G  +E E +   M      PD IT+ +L+ ++
Sbjct: 335 IYTALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYGILVRAF 378


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 155/325 (47%), Gaps = 5/325 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +++ LI    K+ +   AM +FS+MR  G  P+   Y  +I        K+ ++  A
Sbjct: 375 DHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLC----KSGSVDDA 430

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           + YF++M   E   PNI+ Y  L+         D+   L  E+ +  +  +   +N ++D
Sbjct: 431 MLYFEQMID-EGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIID 489

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           ++ K G + E E +   M     KPDIIT+N LID        D+  ++  S++    KP
Sbjct: 490 SHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKP 549

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ ++I  Y +      A  +F++M +   +P+ ITY  I+    +    + A+E++
Sbjct: 550 DIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELY 609

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             ++K G  +++ST N +L   C N L  EA  +F+N     +  ++ T+ ++  A  K 
Sbjct: 610 VSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKC 669

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
              +  + L      NG+VP+ R +
Sbjct: 670 GRMDEAKDLFAAHSANGLVPDVRTY 694



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 152/328 (46%), Gaps = 7/328 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R  + D   YS +IA + K      AM + + M  +G  PD   YN++    LH    +
Sbjct: 229 DRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSI----LHGYCSS 284

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLR-ACAQARNVDQVNALFKELHESILAPDIY 122
               +A+G  +KM+  +  +PN+VTY+ L+   C   R+  +   +F  + +  L PDI 
Sbjct: 285 GQPKEAIGTLKKMRS-DGVEPNVVTYSSLMNYLCKNGRST-EARKIFDSMTKRGLEPDIA 342

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++  Y   G + EM ++L  M  N  +PD   FN+LI +Y K++  D+   VF  +
Sbjct: 343 TYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKM 402

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 P +  + ++I    K+     A   F++M     TP+ I Y  +I     CD  
Sbjct: 403 RQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKW 462

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A E+  E+   G  +     N++++++C  G   E++ LF+    +GV PD  TY  L
Sbjct: 463 DKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTL 522

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
                 A   +   KLL  M   G+ P+
Sbjct: 523 IDGCCLAGKMDEATKLLASMVSVGVKPD 550



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 145/334 (43%), Gaps = 7/334 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    + G+  L       +   G R D   +  L+      +  + A+   L   
Sbjct: 95  YAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRM 154

Query: 74  QKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNAL--FKELHESILAPDIYTYNGVMDA 130
            ++     C P++ +YN LL+  C + R+ + +  L    +       PD+ +YN V++ 
Sbjct: 155 TELG----CIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNG 210

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K G   +  S    M      PD++T++ +I +  K QA DK  +V  +++ +   P 
Sbjct: 211 FFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPD 270

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             T+NS++  Y  +    +A    +KM +    P+ +TY  ++         + AR+IFD
Sbjct: 271 CMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFD 330

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            ++K G +  ++T   +L+ Y   G   E   L +     G+ PD   + +L  AY K  
Sbjct: 331 SMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQE 390

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             +    +  +M Q+G+ PN   +   ++    S
Sbjct: 391 KVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKS 424



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 150/331 (45%), Gaps = 10/331 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEM---RNSGCRPDPSVYNALITAHLHTRDKAK 64
           I D   Y+ L+  +  + +++ A+ L   M   R  G  PD   YN ++       D  K
Sbjct: 160 IPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDK 219

Query: 65  ALAKALGYFQKM-KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           A +    Y + + +G+    P++VTY+ ++ A  +A+ +D+   +   + ++ + PD  T
Sbjct: 220 AYST---YHEMLDRGI---LPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 273

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++  Y  +G  KE    L +M+S+  +P+++T++ L++   K     +  ++F S+ 
Sbjct: 274 YNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMT 333

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
               +P + T+ +++  Y       +   +   M      P    +  +I  Y   + V 
Sbjct: 334 KRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVD 393

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           +A  +F ++ + G +  V     +++  C +G   +A L FE   + G+TP+   Y  L 
Sbjct: 394 QAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLI 453

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
                 +  +  ++L+  M   GI  N  FF
Sbjct: 454 HGLCTCDKWDKAEELILEMLDRGICLNTIFF 484



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 148/360 (41%), Gaps = 48/360 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKAL- 70
           Y  +I V+ K G    AM  F +M + G  P+  VY +LI         DKA+ L   + 
Sbjct: 414 YGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEML 473

Query: 71  ----------------GYFQKMKGMER-----------CKPNIVTYNILLRACAQARNVD 103
                            + ++ + +E             KP+I+TYN L+  C  A  +D
Sbjct: 474 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMD 533

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +   L   +    + PDI TY  +++ Y +   + +  ++   M S+   P+IIT+N+++
Sbjct: 534 EATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIIL 593

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
                 +     ++++ S+  S  +  L T+N ++    K  L  +A  +FQ +      
Sbjct: 594 QGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQ 653

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
               T+  +I     C  +  A+++F   S  G    V T + M E     G   E D L
Sbjct: 654 LETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDL 713

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR--MEQNG----IVPNKRFFLEA 337
           F +    G + DS              +  +V+KLL+R  + + G    ++  K F LEA
Sbjct: 714 FLSMEENGCSADSRM------------LNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEA 761



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 123/310 (39%), Gaps = 43/310 (13%)

Query: 67  AKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           A A+  + +M   G  +  P + TY IL+  C +A  +D   A    + +     D  T+
Sbjct: 71  AAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITF 130

Query: 125 NGVMDAYGKNGMIKE-MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
             ++     +    + M+ VL RM    C PD+ ++N L+          +  ++   + 
Sbjct: 131 TPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMA 190

Query: 184 HSK---EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
             +     P + ++N+++  + K     KA   + +M      P  +TY  II       
Sbjct: 191 DDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQ 250

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP----------------------- 277
            + +A E+ + + K G      T N++L  YC +G P                       
Sbjct: 251 AMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYS 310

Query: 278 ------------TEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKRMEQ 324
                       TEA  +F++    G+ PD +TY+ L + Y TK  + E+   LL  M +
Sbjct: 311 SLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEM-HALLDLMVR 369

Query: 325 NGIVPNKRFF 334
           NGI P+   F
Sbjct: 370 NGIQPDHHVF 379



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 87/211 (41%), Gaps = 16/211 (7%)

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY-G 202
           ++R  + +  P + T+ +LI    +    D       +++    +    TF  ++     
Sbjct: 80  MARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCA 139

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM--- 259
             R     + V ++MT +   P   +Y  ++   G CD  +R++E  + L  +  D    
Sbjct: 140 DKRTSDAMDIVLRRMTELGCIPDVFSYNNLLK--GLCDE-NRSQEALELLHMMADDRGGG 196

Query: 260 ---KVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKAYTKANMKE 313
               V + N +L  +   G   ++D  +   H M   G+ PD  TY  +  A  KA   +
Sbjct: 197 SPPDVVSYNTVLNGFFKEG---DSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMD 253

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
              ++L  M +NG++P+   +   L  + SS
Sbjct: 254 KAMEVLNTMVKNGVMPDCMTYNSILHGYCSS 284


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 148/317 (46%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI  +GK G+   A+ LF +M   GC+PD   Y  +I        K    A A G F
Sbjct: 48  FTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLC----KIGETALAAGLF 103

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KM+    C+ N+VTY+ L+ +  + R V++   +F  +    ++P I+TY  ++     
Sbjct: 104 KKMEE-AGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCN 162

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
               KE  ++L+ M S    P+++TFN+L+D++ K       E V K++     +P + T
Sbjct: 163 FSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVT 222

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS++  Y       +A  +F  M      P   +Y  +I  Y     +  A+++F+E+ 
Sbjct: 223 YNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMI 282

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G      + N ++   C  G   EA  LF+N H  G  P+  TY +L   + K     
Sbjct: 283 HQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLG 342

Query: 314 LVQKLLKRMEQNGIVPN 330
              +L + M+   + PN
Sbjct: 343 KAFRLFRAMQSTYLKPN 359



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 156/327 (47%), Gaps = 9/327 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I  + K G+T LA  LF +M  +GC+ +   Y+ LI    H+  K + + +A
Sbjct: 79  DDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLI----HSLCKYRRVNEA 134

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  F  MK  +   P I TY  L++         + +AL  E+    + P++ T+N ++D
Sbjct: 135 LDIFSYMKAKD-ISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVD 193

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            + K G +   E VL  M     +PD++T+N L+  Y       +  ++F  ++    KP
Sbjct: 194 TFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKP 253

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRARE 247
            + +++ +I  Y KA+   +A+ +F +M     TP+ ++Y  +I  +G C    +  A++
Sbjct: 254 DVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLI--HGLCQLGRLREAQD 311

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F  +   G    + T   +L+ +C  G   +A  LF    +  + P+   Y +L  A  
Sbjct: 312 LFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMC 371

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFF 334
           K+   +  ++L   +   G+ PN + +
Sbjct: 372 KSGNLKDARELFSELFVIGLQPNVQIY 398



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 140/317 (44%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  +    + + A  L +EM +    P+   +N L+        + K LA A G  
Sbjct: 153 YTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCK---EGKVLA-AEGVL 208

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M  M   +P++VTYN L+   +    V +   LF  +      PD+++Y+ +++ Y K
Sbjct: 209 KTMTEM-GVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCK 267

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              I E + + + M      P+ +++N LI    +     + + +FK++  +   P L T
Sbjct: 268 AKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYT 327

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +  ++  + K    GKA  +F+ M +    P+ + Y  ++       N+  ARE+F EL 
Sbjct: 328 YAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELF 387

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
            +G    V     ++   C  GL  EA   F N  + G  PD  +Y ++ + + +   + 
Sbjct: 388 VIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDES 447

Query: 314 LVQKLLKRMEQNGIVPN 330
               L+  M   G + +
Sbjct: 448 RAVHLIGEMRDRGFITD 464



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 126/295 (42%), Gaps = 7/295 (2%)

Query: 37  MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME-RCKPNIVTYNILLRA 95
           M  +G  P+    N LI      +         LG+    KG++   +P IVT+  L+  
Sbjct: 1   MELAGLSPNTCTLNILINCFCQLQ------RVDLGFSVLAKGIKLGLQPTIVTFTTLING 54

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
             +     Q   LF ++      PD YTY  +++   K G       +  +M+   C+ +
Sbjct: 55  LGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLN 114

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
           ++T++ LI S  K +  ++   +F  +      PT+ T+ S+I          +A  +  
Sbjct: 115 VVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLN 174

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
           +MT++   P+ +T+  ++  +     V  A  +   ++++G +  V T N+++  Y M  
Sbjct: 175 EMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWT 234

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              EA  LF+     G  PD  +Y +L   Y KA   +  ++L   M   G  PN
Sbjct: 235 EVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPN 289



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 77/188 (40%)

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P+  T N+LI+ + + Q  D    V    +    +PT+ TF ++I   GK     +A  +
Sbjct: 8   PNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVEL 67

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F  M A    P   TY  II         + A  +F ++ + G  + V T + ++ + C 
Sbjct: 68  FDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCK 127

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
                EA  +F       ++P   TY  L +     +  +    LL  M    I+PN   
Sbjct: 128 YRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVT 187

Query: 334 FLEALETF 341
           F   ++TF
Sbjct: 188 FNVLVDTF 195


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 164/379 (43%), Gaps = 54/379 (14%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ LI  +  +G+   A+ LF +M   G +P+   Y  LI        K + + +A
Sbjct: 114 DATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLC----KDRQVTEA 169

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F +M  KG+    PNIVTYN L+    +      V  L  E+ +S + PD++T N V
Sbjct: 170 FNIFSEMITKGIS---PNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTV 226

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +DA  K GM+ E   V+  M     +P+++T+N L+D +  R   D   +VF +++H   
Sbjct: 227 VDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDC 286

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
              + ++N++I  Y K +   KA Y+F++M+  + TP+ +TY  +I    +   +  A  
Sbjct: 287 VANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAIS 346

Query: 248 IFDELSKLGK-----------------------------------DMKVSTLNAMLEAYC 272
           +F E+   G+                                   D  +     +L+  C
Sbjct: 347 LFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMC 406

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK- 331
             G   +A  LF N  + G+ P+  TY ++     K  +     KL   M +NG  PN  
Sbjct: 407 RAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDC 466

Query: 332 ------RFFL---EALETF 341
                 R FL   EAL T 
Sbjct: 467 TYNLITRGFLRNNEALRTI 485



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 153/371 (41%), Gaps = 56/371 (15%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA---LAKAL 70
           ++KL+  + K       + L ++M + G  PD    N LI +  H R    A   LAK L
Sbjct: 584 FTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLL 643

Query: 71  ---------GYFQKMKGMERCK-------PNIVTYNILLRACAQARNVDQVNALFKELHE 114
                     Y   M G+  CK       P+I TYN L+ A         V  L  E+  
Sbjct: 644 KLGFQPDVVTYGTLMNGL--CKMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVN 701

Query: 115 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
           S + P++  ++ V+DA  K GMI     V+  M     +PD++T+  L+D +  R   D+
Sbjct: 702 SKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDE 761

Query: 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
             +VF +++H    P + ++N +I  Y + +   KA  + ++M+        +TY  +I 
Sbjct: 762 AVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIH 821

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN--------------GLPTEA 280
              +   +  A  +F E+   G+   + T   +L+  C N              G   +A
Sbjct: 822 GLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDA 881

Query: 281 DL---------------------LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
           D+                     LF N  + G+ PD  TY ++     K  + +   KL 
Sbjct: 882 DILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLF 941

Query: 320 KRMEQNGIVPN 330
           ++M++N I  N
Sbjct: 942 RKMDENDIWSN 952



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 119/276 (43%), Gaps = 5/276 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M   R    +   Y+ L+     + +  +A+ +F  M +  C  +   YN LI  +    
Sbjct: 245 MMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYC--- 301

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K +++ KA+  F++M   E   PN VTYN L+        +    +LF E+      PD
Sbjct: 302 -KIQSVDKAMYLFEEMSRQEL-TPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPD 359

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TY  + D   KN  + +  ++L  ++ +   PDI  +  ++D   +    +    +F 
Sbjct: 360 LVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFS 419

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           +L     +P + T+N MI    K  L  +A  +F +M     +P+  TY  I   +   +
Sbjct: 420 NLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNN 479

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
              R  E+ +E+   G  + VST   ++     +GL
Sbjct: 480 EALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGL 515



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 5/217 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  +R    D   Y+ L+     + +   A+ +F  M + GC P+   YN LI  +    
Sbjct: 733 MMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYC--- 789

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            + + + KA+G  ++M  ++    + VTYN L+        +    ALF E+  S   PD
Sbjct: 790 -QIQRMDKAMGLLEQMS-LQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPD 847

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TY  ++D   KN  + E   +L  ++ +    DI+ +N+ ID   +    +    +F 
Sbjct: 848 LVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFS 907

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           +L     +P + T+N MI    K  L  +A  +F+KM
Sbjct: 908 NLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKM 944



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 110/249 (44%), Gaps = 16/249 (6%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           ++S ++  + K+G   +A  +   M   G  PD   Y AL+  H    +    + +A+  
Sbjct: 710 VFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSE----MDEAVKV 765

Query: 73  FQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           F  M  KG   C PN+ +YNIL+    Q + +D+   L +++    L  D  TYN ++  
Sbjct: 766 FDTMVHKG---CVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHG 822

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
               G ++   ++   M ++   PD++T+ +L+D   K     +   + K++  S     
Sbjct: 823 LCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDAD 882

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           +  +N  I    +A     A  +F  +++    P   TY   I ++G C      R + D
Sbjct: 883 ILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYN--IMIHGLC-----KRGLLD 935

Query: 251 ELSKLGKDM 259
           E +KL + M
Sbjct: 936 EANKLFRKM 944



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 122/270 (45%), Gaps = 9/270 (3%)

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            L +AL  F +M   ++  P+ V +N LL + A+ ++   + +L +++    + PD+YT 
Sbjct: 25  TLDEALSTFNRMLH-KQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 83

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
             V+++      +    S L+++     +PD  TF  LI          +   +F  ++ 
Sbjct: 84  AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 143

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NV 242
              +P + T+ ++I    K R   +A  +F +M     +P+ +TY  +I  +G C     
Sbjct: 144 EGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLI--HGLCKLCEW 201

Query: 243 SRAREIFDEL--SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
                + +E+  SK+  D  V TLN +++A C  G+  EA  + +   + GV P+  TY 
Sbjct: 202 KHVTTLMNEMVDSKIMPD--VFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYN 259

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            L   +   N  ++  K+   M     V N
Sbjct: 260 ALMDGHCLRNEVDVAVKVFDTMVHKDCVAN 289



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 133/336 (39%), Gaps = 29/336 (8%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  IY+ ++  M + G+   A  LFS + + G +P+   YN +I    H   K   LA+A
Sbjct: 394 DIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMI----HGLCKQGLLAEA 449

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F +M     C PN  TYN++ R   +     +   L +E+     + D+ T   ++ 
Sbjct: 450 SKLFSEMNK-NGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVG 508

Query: 130 AYGKNGMIKEMESVL------SRMKSNQCK--PDIITFNLLIDSYGKRQAFDKMEQV--- 178
               +G+ + ++ +L      SR    Q +  P +   +     + +   F+ ++     
Sbjct: 509 MLSDDGLDQSVKQILCKPSSSSRPSGTQMRSLPPLFLSSSHNSLHSRSPHFNTLDDALSS 568

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           F  ++H    P+   F  ++ +  K +       +  +M +    P   T   +I  + +
Sbjct: 569 FNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCH 628

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              +  A  +  +L KLG    V T   ++   C   + T+           G++PD  T
Sbjct: 629 LRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLC--KMITK-----------GISPDIFT 675

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           Y  L  A       + V  LL  M  + I+PN   F
Sbjct: 676 YNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVF 711



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 72/394 (18%), Positives = 144/394 (36%), Gaps = 71/394 (18%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +Q   W       Y+ +I  + K+G    A  LFSEM  +GC P+   YN +    L   
Sbjct: 426 LQPNVW------TYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNN 479

Query: 61  DKAKA-------LAKAL-----------------GYFQKMKGMERCKPN----------- 85
           +  +        LA+                   G  Q +K +  CKP+           
Sbjct: 480 EALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQI-LCKPSSSSRPSGTQMR 538

Query: 86  -------IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIK 138
                    ++N L         +D   + F  +      P    +  ++ +  K     
Sbjct: 539 SLPPLFLSSSHNSLHSRSPHFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYS 598

Query: 139 EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 198
            + S+ ++M S    PD+ T N+LI+S+   +       V   L+    +P + T+ +++
Sbjct: 599 TVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLM 658

Query: 199 INYGKARLQGKAEYVF----------------------QKMTAMKYTPSFITYECIITMY 236
               K   +G +  +F                       +M   K  P+ + +  ++   
Sbjct: 659 NGLCKMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDAL 718

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                ++ A ++ D + K G +  V T  A+++ +C+     EA  +F+   + G  P+ 
Sbjct: 719 CKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNV 778

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +Y +L   Y +    +    LL++M   G++ +
Sbjct: 779 RSYNILINGYCQIQRMDKAMGLLEQMSLQGLIAD 812


>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 569

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 151/348 (43%), Gaps = 40/348 (11%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+  I  + K G  + A+ +F  M+   C+P    Y  LI  H     KA     AL  
Sbjct: 220 VYNAYIDGLMKAGNPQRAVEIFQRMKRDCCQPSTETYTLLINLH----GKASQSYMALKL 275

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F +M+  ++CKPNI TY  L+ A A+    ++   +F++L E    PD+Y YN +M+AY 
Sbjct: 276 FNEMRS-QKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAYS 334

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-------RQAFDKM---------- 175
           + G       + S M+   C+PD  ++N+++D+YG+       +  F++M          
Sbjct: 335 RAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRLGITPTMK 394

Query: 176 ------------------EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
                             E +   L  S  +P     NSM+  YG+    GK E V   M
Sbjct: 395 SHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVLTAM 454

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
            +  Y     TY  +I +YG      +   +F  L+       V T  + L AY    L 
Sbjct: 455 ESGPYATDISTYNILINIYGRAGFFEKMEGLFQSLAAKNLKPDVVTWTSRLGAYSRKKLY 514

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
           T+   +FE   + G  PD  T K+L  + +  +  E V  +++ M +N
Sbjct: 515 TKCLEIFEEMIDAGCHPDGRTAKVLLSSCSSEDQIEQVTTVIRTMHKN 562



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 146/302 (48%), Gaps = 8/302 (2%)

Query: 29  LAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88
           +  W+   +  S  + D  ++N +I A+   R     +A+   YF+ ++   RC P   T
Sbjct: 134 ICQWI---LYRSSFQSDVMIFNLVIDAY--GRKSLYKMAETT-YFELIEA--RCIPTEDT 185

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y +LL+A   +  +++  A+F E+ +  L P    YN  +D   K G  +    +  RMK
Sbjct: 186 YALLLKAYCTSGLLEKAEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMK 245

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
            + C+P   T+ LLI+ +GK        ++F  +   K KP + T+ +++  + +  L  
Sbjct: 246 RDCCQPSTETYTLLINLHGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCE 305

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           KAE +F+++    + P    Y  ++  Y        A EIF  +  +G +   ++ N M+
Sbjct: 306 KAEEIFEQLQEDGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMV 365

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           +AY   GL  +A  +FE    +G+TP   ++ LL  AY+KA      + ++  + ++G+ 
Sbjct: 366 DAYGRGGLHEDAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLE 425

Query: 329 PN 330
           P+
Sbjct: 426 PD 427



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 127/262 (48%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           + +++ +N+++ A  +          + EL E+   P   TY  ++ AY  +G++++ E+
Sbjct: 145 QSDVMIFNLVIDAYGRKSLYKMAETTYFELIEARCIPTEDTYALLLKAYCTSGLLEKAEA 204

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           + + M+     P  I +N  ID   K     +  ++F+ +     +P+  T+  +I  +G
Sbjct: 205 IFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRDCCQPSTETYTLLINLHG 264

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           KA     A  +F +M + K  P+  TY  ++  +       +A EIF++L + G +  V 
Sbjct: 265 KASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVY 324

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
             NA++EAY   G P  A  +F    +MG  PD ++Y ++  AY +  + E  Q + + M
Sbjct: 325 AYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEM 384

Query: 323 EQNGIVPNKRFFLEALETFSSS 344
           ++ GI P  +  +  L  +S +
Sbjct: 385 KRLGITPTMKSHMLLLSAYSKA 406



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 144/319 (45%), Gaps = 9/319 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           + +D  I++ +I   G+K   ++A   + E+  + C P    Y  L+ A+      +  L
Sbjct: 144 FQSDVMIFNLVIDAYGRKSLYKMAETTYFELIEARCIPTEDTYALLLKAYC----TSGLL 199

Query: 67  AKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            KA   F +M+  G+    P+ + YN  +    +A N  +   +F+ +      P   TY
Sbjct: 200 EKAEAIFAEMRKYGL---PPSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRDCCQPSTETY 256

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
             +++ +GK         + + M+S +CKP+I T+  L++++ +    +K E++F+ L  
Sbjct: 257 TLLINLHGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQE 316

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
              +P +  +N+++  Y +A     A  +F  M  M   P   +Y  ++  YG       
Sbjct: 317 DGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHED 376

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A+ +F+E+ +LG    + +   +L AY   G   + + +    H  G+ PD+     +  
Sbjct: 377 AQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLN 436

Query: 305 AYTKANMKELVQKLLKRME 323
            Y +      ++++L  ME
Sbjct: 437 LYGRLGQFGKMEEVLTAME 455



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 18/183 (9%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           L++   K G       + +E+  SG  PD  V N+++  +L+ R         LG F KM
Sbjct: 399 LLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSML--NLYGR---------LGQFGKM 447

Query: 77  K----GMERCK--PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           +     ME      +I TYNIL+    +A   +++  LF+ L    L PD+ T+   + A
Sbjct: 448 EEVLTAMESGPYATDISTYNILINIYGRAGFFEKMEGLFQSLAAKNLKPDVVTWTSRLGA 507

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           Y +  +  +   +   M    C PD  T  +L+ S       +++  V ++ MH   +  
Sbjct: 508 YSRKKLYTKCLEIFEEMIDAGCHPDGRTAKVLLSSCSSEDQIEQVTTVIRT-MHKNMETV 566

Query: 191 LPT 193
           LP 
Sbjct: 567 LPV 569


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 151/321 (47%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ LI    K+G+   AM +FS+MR  G  PD   Y A+I        K+  +  A
Sbjct: 340 DHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILC----KSGRVEDA 395

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           + YF++M   E   P  + YN L+         ++   L  E+ +  +  +   +N ++D
Sbjct: 396 MLYFEQMID-EGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIID 454

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           ++ K G + E E +   M     KPDIIT++ LID Y      D+  ++   ++    KP
Sbjct: 455 SHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKP 514

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T+ ++I  Y K    G A  +F++M +   +P  ITY  I+         + A+E++
Sbjct: 515 NTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 574

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             +++ G  +++ST N +L   C N L  +A  +F+N   M +  ++ T+ ++  A  K 
Sbjct: 575 VRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKV 634

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
                 + L      NG+VPN
Sbjct: 635 GRNGEAKDLFVAFSSNGLVPN 655



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 141/326 (43%), Gaps = 10/326 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I    K+G +  A   + EM +    PD   Y+++I A      K +A+ KA
Sbjct: 195 DVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALC----KGQAMDKA 250

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESI----LAPDIYTY 124
           +     M       PN  TY  ++   C+  +  + +  L K   + +    L PDI TY
Sbjct: 251 MEVLTSMV-KNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATY 309

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
             ++  Y   G +  M ++L  M  N   PD   +N+LI +Y K+   D+   VF  +  
Sbjct: 310 CTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQ 369

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P   T+ ++I    K+     A   F++M     +P  I Y  +I     C+   R
Sbjct: 370 QGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWER 429

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A E+  E+   G  +     N++++++C  G   E++ LF+    +GV PD  TY  L  
Sbjct: 430 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLID 489

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
            Y  A   +   KLL  M   G+ PN
Sbjct: 490 GYCLAGKMDEAMKLLSGMVSVGLKPN 515



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 148/325 (45%), Gaps = 8/325 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS +IA + K      AM + + M  +G  P+   Y    T+ +H    +    +A
Sbjct: 230 DVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTY----TSIMHGYCSSGQPKEA 285

Query: 70  LGYFQKMK--GME--RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           +G+ +K++  G+E    +P+I TY  LL+  A    +  ++AL   +  + + PD Y YN
Sbjct: 286 IGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYN 345

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++ AY K G + E   V S+M+     PD +T+  +I    K    +     F+ ++  
Sbjct: 346 ILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDE 405

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P    +NS+I          +AE +  +M       + I +  II  +     V  +
Sbjct: 406 GLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIES 465

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            ++FD + ++G    + T + +++ YC+ G   EA  L     ++G+ P++ TY+ L   
Sbjct: 466 EKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLING 525

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
           Y K +       L K ME +G+ P+
Sbjct: 526 YCKISRMGDALVLFKEMESSGVSPD 550



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 145/371 (39%), Gaps = 48/371 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH------ 56
           +Q+    D   Y  +I ++ K G+   AM  F +M + G  P   VYN+LI         
Sbjct: 368 RQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKW 427

Query: 57  -------LHTRDKAKALAKAL------GYFQKMKGMER-----------CKPNIVTYNIL 92
                  L   D+   L           + ++ + +E             KP+I+TY+ L
Sbjct: 428 ERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTL 487

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +     A  +D+   L   +    L P+  TY  +++ Y K   + +   +   M+S+  
Sbjct: 488 IDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGV 547

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            PDIIT+N+++    + +     ++++  +  S  +  L T+N ++    K +L   A  
Sbjct: 548 SPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALR 607

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +FQ +  M       T+  +I           A+++F   S  G      T   M E   
Sbjct: 608 MFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAENII 667

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN------G 326
             GL  E D LF +  + G T DS                 +V++LL+R E         
Sbjct: 668 GQGLLEELDQLFLSMEDNGCTVDSGMLNF------------IVRELLQRGEITRAGTYLS 715

Query: 327 IVPNKRFFLEA 337
           ++  K F LEA
Sbjct: 716 MIDEKHFSLEA 726



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/364 (20%), Positives = 138/364 (37%), Gaps = 47/364 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    +  +  L       +   G R +   +  L+      +  + A+   L   
Sbjct: 90  YAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 74  QKMKGMERCKPNIVTYNILLRA-CAQARNVD--QVNALFKELHESILAPDIYTYNGVMDA 130
            ++     C P++ +  ILL+  C + R+ +  ++  +  +      APD+ +Y  V++ 
Sbjct: 150 TELS----CMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVING 205

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K G   +  S    M   +  PD++T++ +I +  K QA DK  +V  S++ +   P 
Sbjct: 206 FFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPN 265

Query: 191 LPTFNSMIINY---GKAR-----------------------------LQGKA-------- 210
             T+ S++  Y   G+ +                             LQG A        
Sbjct: 266 CRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGM 325

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
             +   M      P    Y  +I  Y     V  A  +F ++ + G +    T  A++  
Sbjct: 326 HALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGI 385

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            C +G   +A L FE   + G++P +  Y  L       N  E  ++L+  M   GI  N
Sbjct: 386 LCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLN 445

Query: 331 KRFF 334
             FF
Sbjct: 446 TIFF 449



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 86/209 (41%), Gaps = 12/209 (5%)

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY-G 202
           ++R  + +  P + T+ +LI    +    D       +++    +    TF  ++     
Sbjct: 75  MARAGAGKVTPTVHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCA 134

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
             R     + V ++MT +   P    + C I + G CD  +R++E   EL  +  D +  
Sbjct: 135 DKRTSDAMDIVLRRMTELSCMPD--VFSCTILLKGLCDE-NRSQEAL-ELPHMMADGRGG 190

Query: 263 TLNAMLEAY--CMNGLPTEADL--LFENSHNM---GVTPDSSTYKLLYKAYTKANMKELV 315
                + +Y   +NG   E D    +   H M    ++PD  TY  +  A  K    +  
Sbjct: 191 GSAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKA 250

Query: 316 QKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            ++L  M +NG++PN R +   +  + SS
Sbjct: 251 MEVLTSMVKNGVMPNCRTYTSIMHGYCSS 279


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 152/328 (46%), Gaps = 7/328 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R  + D   YS +IA + K      AM + + M  +G  PD   YN++    LH    +
Sbjct: 229 DRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSI----LHGYCSS 284

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLR-ACAQARNVDQVNALFKELHESILAPDIY 122
               +A+G  +KM+  +  +PN+VTY+ L+   C   R+  +   +F  + +  L PDI 
Sbjct: 285 GQPKEAIGTLKKMRS-DGVEPNVVTYSSLMNYLCKNGRST-EARKIFDSMTKRGLEPDIA 342

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++  Y   G + EM ++L  M  N  +PD   FN+LI +Y K++  D+   VF  +
Sbjct: 343 TYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKM 402

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 P +  + ++I    K+     A   F++M     TP+ I Y  +I     CD  
Sbjct: 403 RQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKW 462

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A E+  E+   G  +     N++++++C  G   E++ LF+    +GV PD  TY  L
Sbjct: 463 DKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTL 522

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
                 A   +   KLL  M   G+ P+
Sbjct: 523 IDGCCLAGKMDEATKLLASMVSVGVKPD 550



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 155/325 (47%), Gaps = 5/325 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +++ LI    K+ +   AM +FS+MR  G  P+   Y  +I        K+ ++  A
Sbjct: 375 DHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLC----KSGSVDDA 430

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           + YF++M   E   PNI+ Y  L+         D+   L  E+ +  +  +   +N ++D
Sbjct: 431 MLYFEQMID-EGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIID 489

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           ++ K G + E E +   M     KPDIIT+N LID        D+  ++  S++    KP
Sbjct: 490 SHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKP 549

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ ++I  Y +      A  +F++M +   +P+ ITY  I+    +    + A+E++
Sbjct: 550 DIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELY 609

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             ++K G  +++ST N +L   C N L  EA  +F+N     +  ++ T+ ++  A  K 
Sbjct: 610 VSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKC 669

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
              +  + L      NG+VP+ R +
Sbjct: 670 GRMDEAKDLFAAHSANGLVPDVRTY 694



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 145/334 (43%), Gaps = 7/334 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    + G+  L       +   G R D   +  L+      +  + A+   L   
Sbjct: 95  YAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRM 154

Query: 74  QKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNAL--FKELHESILAPDIYTYNGVMDA 130
            ++     C P++ +YN LL+  C + R+ + +  L    +       PD+ +YN V++ 
Sbjct: 155 TELG----CIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNG 210

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K G   +  S    M      PD++T++ +I +  K QA DK  +V  +++ +   P 
Sbjct: 211 FFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPD 270

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             T+NS++  Y  +    +A    +KM +    P+ +TY  ++         + AR+IFD
Sbjct: 271 CMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFD 330

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            ++K G +  ++T   +L+ Y   G   E   L +     G+ PD   + +L  AY K  
Sbjct: 331 SMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQE 390

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             +    +  +M Q+G+ PN   +   ++    S
Sbjct: 391 KVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKS 424



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 150/331 (45%), Gaps = 10/331 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEM---RNSGCRPDPSVYNALITAHLHTRDKAK 64
           I D   Y+ L+  +  + +++ A+ L   M   R  G  PD   YN ++       D  K
Sbjct: 160 IPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDK 219

Query: 65  ALAKALGYFQKM-KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           A +    Y + + +G+    P++VTY+ ++ A  +A+ +D+   +   + ++ + PD  T
Sbjct: 220 AYST---YHEMLDRGI---LPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 273

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++  Y  +G  KE    L +M+S+  +P+++T++ L++   K     +  ++F S+ 
Sbjct: 274 YNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMT 333

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
               +P + T+ +++  Y       +   +   M      P    +  +I  Y   + V 
Sbjct: 334 KRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVD 393

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           +A  +F ++ + G +  V     +++  C +G   +A L FE   + G+TP+   Y  L 
Sbjct: 394 QAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLI 453

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
                 +  +  ++L+  M   GI  N  FF
Sbjct: 454 HGLCTCDKWDKAEELILEMLDRGICLNTIFF 484



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 148/360 (41%), Gaps = 48/360 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKAL- 70
           Y  +I V+ K G    AM  F +M + G  P+  VY +LI         DKA+ L   + 
Sbjct: 414 YGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEML 473

Query: 71  ----------------GYFQKMKGMER-----------CKPNIVTYNILLRACAQARNVD 103
                            + ++ + +E             KP+I+TYN L+  C  A  +D
Sbjct: 474 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMD 533

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +   L   +    + PDI TY  +++ Y +   + +  ++   M S+   P+IIT+N+++
Sbjct: 534 EATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIIL 593

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
                 +     ++++ S+  S  +  L T+N ++    K  L  +A  +FQ +      
Sbjct: 594 QGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQ 653

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
               T+  +I     C  +  A+++F   S  G    V T + M E     G   E D L
Sbjct: 654 LETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDL 713

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR--MEQNG----IVPNKRFFLEA 337
           F +    G + DS              +  +V+KLL+R  + + G    ++  K F LEA
Sbjct: 714 FLSMEENGCSADSRM------------LNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEA 761



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 125/311 (40%), Gaps = 45/311 (14%)

Query: 67  AKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           A A+  + +M   G  +  P + TY IL+  C +A  +D   A    + +     D  T+
Sbjct: 71  AAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITF 130

Query: 125 NGVMDAYGKNGMIKE-MESVLSRMKSNQCKPDIITFNLLI----DSYGKRQAFDKMEQVF 179
             ++     +    + M+ VL RM    C PD+ ++N L+    D    ++A + +  + 
Sbjct: 131 TPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMA 190

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
                    P + ++N+++  + K     KA   + +M      P  +TY  II      
Sbjct: 191 DD-RGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKA 249

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP---------------------- 277
             + +A E+ + + K G      T N++L  YC +G P                      
Sbjct: 250 QAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTY 309

Query: 278 -------------TEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKRME 323
                        TEA  +F++    G+ PD +TY+ L + Y TK  + E+   LL  M 
Sbjct: 310 SSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEM-HALLDLMV 368

Query: 324 QNGIVPNKRFF 334
           +NGI P+   F
Sbjct: 369 RNGIQPDHHVF 379



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 87/211 (41%), Gaps = 16/211 (7%)

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY-G 202
           ++R  + +  P + T+ +LI    +    D       +++    +    TF  ++     
Sbjct: 80  MARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCA 139

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM--- 259
             R     + V ++MT +   P   +Y  ++   G CD  +R++E  + L  +  D    
Sbjct: 140 DKRTSDAMDIVLRRMTELGCIPDVFSYNNLLK--GLCDE-NRSQEALELLHMMADDRGGG 196

Query: 260 ---KVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKAYTKANMKE 313
               V + N +L  +   G   ++D  +   H M   G+ PD  TY  +  A  KA   +
Sbjct: 197 SPPDVVSYNTVLNGFFKEG---DSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMD 253

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
              ++L  M +NG++P+   +   L  + SS
Sbjct: 254 KAMEVLNTMVKNGVMPDCMTYNSILHGYCSS 284


>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
          Length = 838

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 156/344 (45%), Gaps = 9/344 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+  I  + K G T+ A+ +F  M+   C+P  + Y  LI  +     KA     AL  
Sbjct: 170 VYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLY----GKASKSYMALKV 225

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F +M+  ++CKPNI T+  L+ A A+    ++   +F++L E+ L PD+Y YN +M+AY 
Sbjct: 226 FHEMRS-QKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYS 284

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + G       + S M+   C+PD  ++N+++D+YG+    +  + VF+ +      PT+ 
Sbjct: 285 RAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMK 344

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           +   ++  Y +A    K E +  +M      P       ++ +YG      +  E+   +
Sbjct: 345 SHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAM 404

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            K      +ST N ++  Y   G     + LF +     + PD  T+     AY++    
Sbjct: 405 EKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQY 464

Query: 313 ELVQKLLKRMEQNGIVPN----KRFFLEALETFSSSLAGSQSGS 352
               ++ + M   G  P+    K   L+     +S L GS S S
Sbjct: 465 NRCLEVFEEMIDAGCYPDGGTAKNVLLKVAIFMASFLVGSASPS 508



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 142/299 (47%), Gaps = 8/299 (2%)

Query: 32  WLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI 91
           W+   +  S   PD   YN LI A+       KA +  L   +      RC P   TY +
Sbjct: 87  WI---LYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEA-----RCVPTEDTYAL 138

Query: 92  LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151
           LL+A   +  +++  A+F E+ +    P    YN  +D   K G  ++   +  RMK ++
Sbjct: 139 LLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDR 198

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
           C+P   T+ +LI+ YGK        +VF  +   K KP + TF +++  + +  L  KAE
Sbjct: 199 CQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAE 258

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
            +F+++      P    Y  ++  Y        A EIF  +  +G +   ++ N M++AY
Sbjct: 259 EIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAY 318

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              GL  +A  +FE    +G+TP   ++ LL  AY++A      ++++ +M ++GI P+
Sbjct: 319 GRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPD 377



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 133/262 (50%), Gaps = 6/262 (2%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+++ YN+L+ A  Q     +  + + EL E+   P   TY  ++ AY  +G++++ E+V
Sbjct: 96  PDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAV 155

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
            + M+     P  + +N  ID   K     K  ++F+ +   + +P+  T+  +I  YGK
Sbjct: 156 FAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGK 215

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMY---GYCDNVSRAREIFDELSKLGKDMK 260
           A     A  VF +M + K  P+  T+  ++  +   G C+   +A EIF++L + G +  
Sbjct: 216 ASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCE---KAEEIFEQLQEAGLEPD 272

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           V   NA++EAY   G P  A  +F    +MG  PD ++Y ++  AY +A + E  Q + +
Sbjct: 273 VYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFE 332

Query: 321 RMEQNGIVPNKRFFLEALETFS 342
            M++ GI P  +  +  L  +S
Sbjct: 333 VMKRLGITPTMKSHMLLLSAYS 354



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 138/316 (43%), Gaps = 5/316 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI   G+K   + A   + E+  + C P    Y  L+ A+      +  L KA
Sbjct: 97  DVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYC----TSGLLEKA 152

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F +M+      P+ V YN  +    +  +  +   +F+ +      P   TY  +++
Sbjct: 153 EAVFAEMRKYG-FPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLIN 211

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK         V   M+S +CKP+I TF  L++++ +    +K E++F+ L  +  +P
Sbjct: 212 LYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEP 271

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  +N+++  Y +A     A  +F  M  M   P   +Y  ++  YG       A+ +F
Sbjct: 272 DVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVF 331

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           + + +LG    + +   +L AY   G   + + +    H  G+ PD+     +   Y + 
Sbjct: 332 EVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRL 391

Query: 310 NMKELVQKLLKRMEQN 325
              E ++++L  ME+ 
Sbjct: 392 GQFEKMEEVLTAMEKG 407



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 66/161 (40%)

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           L  S   P +  +N +I  YG+  L  KAE  + ++   +  P+  TY  ++  Y     
Sbjct: 89  LYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGL 148

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           + +A  +F E+ K G        NA ++     G   +A  +FE        P ++TY +
Sbjct: 149 LEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTM 208

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           L   Y KA+   +  K+   M      PN   F   +  F+
Sbjct: 209 LINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFA 249


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 146/317 (46%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    K G T+ A+ ++  M  SG RPD   +N L+ A      KAK +      F
Sbjct: 92  YNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAF----KKAKRVDSVWKLF 147

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M+  + C PN++TY+IL+ A  +   V++   +F ++      P+I+TY  ++D  GK
Sbjct: 148 EEMQN-QNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGK 206

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G + +   +   M S       + +N LI   G+    D   ++F+ ++    +P   T
Sbjct: 207 SGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVT 266

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           F S++   G A    +A  +FQ+   +        Y  +I        +  A EIF EL 
Sbjct: 267 FTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELE 326

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G    V T NA+++  C +G   +A +L  +    G TPD + Y  L     K+   E
Sbjct: 327 EDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVE 386

Query: 314 LVQKLLKRMEQNGIVPN 330
              +LL  M+  G  P+
Sbjct: 387 EAGQLLLEMQSLGYEPD 403



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 148/324 (45%), Gaps = 5/324 (1%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           YI    I+ +L       G    ++     M    C    S YN+LI A +    KA   
Sbjct: 50  YILQPRIFIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFV----KAGYT 105

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            KAL  ++ M G    +P+  T+N+L+ A  +A+ VD V  LF+E+     +P++ TY+ 
Sbjct: 106 QKALAVYRVM-GQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSI 164

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++DA  K G +++   V   MKS  C+P+I T+  +ID  GK    DK   +F+ +    
Sbjct: 165 LIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEG 224

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
              T   +NS+I   G++     A  +F++M +    P  +T+  ++   G     S AR
Sbjct: 225 LVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEAR 284

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            IF E   +G  + V+  N +++  C +    EA  +F      G+ PD  T+  L    
Sbjct: 285 RIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGL 344

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K+        LL  M++ G  P+
Sbjct: 345 CKSGRIHDAFILLGDMKRAGCTPD 368



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 141/311 (45%), Gaps = 37/311 (11%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           +A   +Y+ LI  +G+ G+   A  LF EM + G +PD   + +L+    +    A   +
Sbjct: 226 VATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLV----YGLGVAGRAS 281

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A   FQ+ + +  C  ++  YN+L+    +++ +D+   +F EL E  L PD+YT+N +
Sbjct: 282 EARRIFQEARDVG-CALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNAL 340

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           MD   K+G I +   +L  MK   C PD+  +N LID   K    ++  Q+   +     
Sbjct: 341 MDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGY 400

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P + T+N++I    K      A  +F++++A  +  + +TY  I+   G C    R   
Sbjct: 401 EPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGFANT-VTYNTILN--GLC-MAGRV-- 454

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
             DE  KL   MK  T++ +++                        PD  TY  L     
Sbjct: 455 --DEAYKLFNGMKQETVDGVID------------------------PDFVTYTTLLNGAR 488

Query: 308 KANMKELVQKL 318
           +A + EL   L
Sbjct: 489 QAGLSELANSL 499



 Score = 41.2 bits (95), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 77/211 (36%), Gaps = 35/211 (16%)

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA----------RLQG 208
           F  L   Y      +K  +  K +   +   T   +NS+I  + KA          R+ G
Sbjct: 57  FIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMG 116

Query: 209 -------------------KAEYV------FQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                              KA+ V      F++M     +P+ ITY  +I     C  V 
Sbjct: 117 QSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVE 176

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           +A ++F ++   G    + T  +M++    +G   +A  LFE   + G+      Y  L 
Sbjct: 177 KALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLI 236

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
               ++   +   KL + M   G+ P+   F
Sbjct: 237 HGLGRSGRADAAAKLFREMLSKGLQPDHVTF 267


>gi|356516744|ref|XP_003527053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 882

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 159/310 (51%), Gaps = 7/310 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q  +  D   Y+ ++ ++G+  +      L  +M   GC+P+   YN LI    H+ 
Sbjct: 376 LKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLI----HSY 431

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +A  L +AL  F +M+ M  C+P+ VTY  L+   A+A  +D   ++++ + E  L+PD
Sbjct: 432 GRANYLGEALNVFNQMQEMG-CEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPD 490

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            +TY+ +++  GK+G +     +   M    C P+I+T+N+LI    K + +    ++++
Sbjct: 491 TFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLYR 550

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            + ++  KP   T++ ++   G      +AE VF +M    + P    Y  +I ++G   
Sbjct: 551 DMQNAGFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGKAG 610

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYC-MNGLPTEADLLFENSHNMGVTPDSSTY 299
           NV +A E +  + + G    V T N++L A+  ++ LP   +LL +N   +G+ P   TY
Sbjct: 611 NVEKAWEWYHAMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLL-QNMVTLGLNPSLQTY 669

Query: 300 KLLYKAYTKA 309
            LL    T+A
Sbjct: 670 TLLLSCCTEA 679



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 116/262 (44%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL +F  +K       +  TY  ++    +AR    +N L +++ +    P++ TYN ++
Sbjct: 369 ALSFFYWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLI 428

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            +YG+   + E  +V ++M+   C+PD +T+  LID + K    D    +++ +      
Sbjct: 429 HSYGRANYLGEALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLS 488

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   T++ MI   GK+     A  +F +M      P+ +TY  +I +     N   A ++
Sbjct: 489 PDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKL 548

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           + ++   G      T + ++E     G   EA+ +F         PD   Y LL   + K
Sbjct: 549 YRDMQNAGFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGK 608

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
           A   E   +    M + G++PN
Sbjct: 609 AGNVEKAWEWYHAMLRAGLLPN 630



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 96/215 (44%)

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D +TY  ++   G+      +  +L +M  + C+P+++T+N LI SYG+     +   VF
Sbjct: 385 DGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLGEALNVF 444

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             +     +P   T+ ++I  + KA     A  ++++M  +  +P   TY  +I   G  
Sbjct: 445 NQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKS 504

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            N+S A  +F E+   G    + T N ++           A  L+ +  N G  PD  TY
Sbjct: 505 GNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLYRDMQNAGFKPDKVTY 564

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            ++ +        E  + +   M+QN  VP++  +
Sbjct: 565 SIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVY 599



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 105/228 (46%), Gaps = 7/228 (3%)

Query: 121 IYTYNGVMDAYGKNGMIKEMES---VLSRMKSNQCKP----DIITFNLLIDSYGKRQAFD 173
           +Y  N  +DAY  N ++K+++     LS     + +P    D  T+  ++   G+ + F 
Sbjct: 344 LYNLNFSIDAYQANQILKQLQDHSVALSFFYWLKRQPGFWHDGHTYTTMVGILGRAREFG 403

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
            + ++ + ++    +P + T+N +I +YG+A   G+A  VF +M  M   P  +TY  +I
Sbjct: 404 AINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLGEALNVFNQMQEMGCEPDRVTYCTLI 463

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
            ++     +  A  +++ + ++G      T + M+     +G  + A  LF    + G  
Sbjct: 464 DIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCV 523

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           P+  TY +L     KA   +   KL + M+  G  P+K  +   +E  
Sbjct: 524 PNIVTYNILIALQAKARNYQTALKLYRDMQNAGFKPDKVTYSIVMEVL 571



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 40/197 (20%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  YS +I  +GK G    A  LF EM + GC P+   YN LI      + KA+    A
Sbjct: 490 DTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIA----LQAKARNYQTA 545

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  ++ M+     KP+ VTY+I++        +++  A+F E+ ++   PD   Y  ++D
Sbjct: 546 LKLYRDMQNAG-FKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLLID 604

Query: 130 AYGKNGMIK-----------------------------------EMESVLSRMKSNQCKP 154
            +GK G ++                                   +  ++L  M +    P
Sbjct: 605 LWGKAGNVEKAWEWYHAMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNP 664

Query: 155 DIITFNLLIDSYGKRQA 171
            + T+ LL+    + Q+
Sbjct: 665 SLQTYTLLLSCCTEAQS 681


>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 410

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 149/315 (47%), Gaps = 6/315 (1%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           +I+++G++G+  LA  +F  M  +G  P    Y AL++ +     K   L +A   F+ M
Sbjct: 36  IISILGREGKLGLAREIFEGMSKAGVAPSVHAYTALLSGY----AKQGLLKEAWALFEAM 91

Query: 77  KGMERCKPNIVTYNILLRACA-QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG 135
           K  + C PN++TYN L+ AC  +A  +  +  LF+E+ ++ + P+  TYN +++A     
Sbjct: 92  K-EKGCSPNVLTYNTLINACTKRAYRLPDLVGLFEEMKQAGVQPNDITYNCMVNACVCLS 150

Query: 136 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195
           +      +L  MK+  C P++I++  +I+S G+    D+  ++F+ +      P   T+N
Sbjct: 151 LFDTASQILKEMKAVNCLPNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYN 210

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
           S++  Y +     KA  +F  M      P   TY  +I M G     + A  +F E+ + 
Sbjct: 211 SLLKAYAREGRYEKAMCLFVGMEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRK 270

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
           G      T N ML+AY        A  L +     G TPD  TY +L  A  KA      
Sbjct: 271 GCTPDRVTYNTMLDAYSKWSRRGRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGSASEA 330

Query: 316 QKLLKRMEQNGIVPN 330
            ++   ++  G  PN
Sbjct: 331 MQIFHELKAAGHSPN 345



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 153/329 (46%), Gaps = 4/329 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L++   K+G  + A  LF  M+  GC P+   YN LI A      +A  L   +G F
Sbjct: 68  YTALLSGYAKQGLLKEAWALFEAMKEKGCSPNVLTYNTLINA---CTKRAYRLPDLVGLF 124

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++MK     +PN +TYN ++ AC      D  + + KE+      P++ +Y  ++++ G+
Sbjct: 125 EEMK-QAGVQPNDITYNCMVNACVCLSLFDTASQILKEMKAVNCLPNVISYTTMINSLGR 183

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G + E   +   MK     P+  T+N L+ +Y +   ++K   +F  +      P L T
Sbjct: 184 SGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGMEDEGCIPDLYT 243

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N++I   G+  L  +AE VF +M     TP  +TY  ++  Y       RAR++   + 
Sbjct: 244 YNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARDLLKTMK 303

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G    + T N +L+A    G  +EA  +F      G +P+  ++  L   Y +    E
Sbjct: 304 RAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFSALINMYGRLGYFE 363

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFS 342
             ++    M   G VPN   +   + ++S
Sbjct: 364 EAERAWVEMRATGCVPNATAYCGLMNSYS 392



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 127/258 (49%), Gaps = 5/258 (1%)

Query: 108 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
           +F+ + ++ +AP ++ Y  ++  Y K G++KE  ++   MK   C P+++T+N LI++  
Sbjct: 52  IFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWALFEAMKEKGCSPNVLTYNTLINACT 111

Query: 168 KRQ-AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
           KR      +  +F+ +  +  +P   T+N M+       L   A  + ++M A+   P+ 
Sbjct: 112 KRAYRLPDLVGLFEEMKQAGVQPNDITYNCMVNACVCLSLFDTASQILKEMKAVNCLPNV 171

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           I+Y  +I   G    +  A E+F+E+ +LG+     T N++L+AY   G   +A  LF  
Sbjct: 172 ISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVG 231

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLA 346
             + G  PD  TY  +     +  +    + +   M++ G  P++  +   L+ +S    
Sbjct: 232 MEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKW-- 289

Query: 347 GSQSGSAKTDLTRSLSTA 364
            S+ G A+ DL +++  A
Sbjct: 290 -SRRGRAR-DLLKTMKRA 305



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 9/161 (5%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--LHTRDKAKA 65
           I D   Y+ +I + G+ G    A  +F EM+  GC PD   YN ++ A+     R +A+ 
Sbjct: 238 IPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARD 297

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L K +    K  G   C P++ TYNILL A  +A +  +   +F EL  +  +P++ +++
Sbjct: 298 LLKTM----KRAG---CTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFS 350

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
            +++ YG+ G  +E E     M++  C P+   +  L++SY
Sbjct: 351 ALINMYGRLGYFEEAERAWVEMRATGCVPNATAYCGLMNSY 391



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 59/125 (47%), Gaps = 10/125 (8%)

Query: 215 QKMTAMKYTPSFITYE-----C--IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
           Q +   ++    + YE     C  II++ G    +  AREIF+ +SK G    V    A+
Sbjct: 12  QALQVFRFLQEHLEYELKEHNCVTIISILGREGKLGLAREIFEGMSKAGVAPSVHAYTAL 71

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA--NMKELVQKLLKRMEQN 325
           L  Y   GL  EA  LFE     G +P+  TY  L  A TK    + +LV  L + M+Q 
Sbjct: 72  LSGYAKQGLLKEAWALFEAMKEKGCSPNVLTYNTLINACTKRAYRLPDLV-GLFEEMKQA 130

Query: 326 GIVPN 330
           G+ PN
Sbjct: 131 GVQPN 135


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 162/328 (49%), Gaps = 17/328 (5%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---HLHTRDKAKA 65
           AD  IYS +I  + K      A+ LF+EM N G RPD   Y++LI+    +    D ++ 
Sbjct: 238 ADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 297

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L+  L          +  PN+VT+N L+ A A+   + +   LF E+ +  + P+I TYN
Sbjct: 298 LSDMLE--------RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYN 349

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-RQAFDKMEQVFKSLMH 184
            +++ +  +  + E + + + M S  C PD++T+N LI+ + K ++  D ME +F+ +  
Sbjct: 350 SLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGME-LFRDMSR 408

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--V 242
                   T+ ++I  + +A     A+ VF++M +    P+ +TY  ++   G C N  +
Sbjct: 409 RGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLD--GLCKNGKL 466

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +F+ L K   +  + T N M E  C  G   +   LF +    GV PD   Y  +
Sbjct: 467 EKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTM 526

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
              + K  +KE    L  +M+++G +P+
Sbjct: 527 ISGFCKKGLKEEAYTLFIKMKEDGPLPD 554



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 148/325 (45%), Gaps = 7/325 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  DT  ++ L+  + +  +   A+ L   M   GC+PD   Y A+I   L  R +    
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVING-LCKRGEPDL- 223

Query: 67  AKALGYFQKM-KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
             AL    KM KG  + + ++V Y+ ++ +  + R+VD    LF E+    + PD++TY+
Sbjct: 224 --ALNLLNKMEKG--KIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYS 279

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++      G   +   +LS M   +  P+++TFN LID++ K     + E++F  ++  
Sbjct: 280 SLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR 339

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P + T+NS+I  +       +A+ +F  M +    P  +TY  +I  +     V   
Sbjct: 340 SIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDG 399

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            E+F ++S+ G      T   ++  +        A ++F+   + GV P+  TY  L   
Sbjct: 400 MELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDG 459

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
             K    E    + + ++++ + P+
Sbjct: 460 LCKNGKLEKAMVVFEYLQKSKMEPD 484



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 128/310 (41%), Gaps = 42/310 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTRDKAKALAKALGY 72
           ++ LI    K+G+   A  LF EM      P+   YN+LI    +H R     L +A   
Sbjct: 313 FNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDR-----LDEAQQI 367

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F  M   + C P++VTYN L+    +A+ V     LF+++    L  +  TY  ++  + 
Sbjct: 368 FTLMVSKD-CLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFF 426

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           +       + V  +M S+   P+I+T+N L+D   K    +K   VF+ L  SK +P + 
Sbjct: 427 QASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIY 486

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N M     KA   GK E                                   ++F  L
Sbjct: 487 TYNIMSEGMCKA---GKVE--------------------------------DGWDLFCSL 511

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           S  G    V   N M+  +C  GL  EA  LF      G  PDS TY  L +A+ +   K
Sbjct: 512 SLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDK 571

Query: 313 ELVQKLLKRM 322
               +L+K M
Sbjct: 572 AASAELIKEM 581



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 147/366 (40%), Gaps = 46/366 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +SKL++ + K  +  L +    +M   G   +   YN +I         + ALA  LG  
Sbjct: 68  FSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALA-ILGKM 126

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+       P+IVT N LL        + +  AL  ++ E    PD  T+  ++    +
Sbjct: 127 MKLG----YGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQ 182

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITF-----------------NLL-------------- 162
           +    E  +++ RM    C+PD++T+                 NLL              
Sbjct: 183 HNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVI 242

Query: 163 ----IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI---INYGKARLQGKAEYVFQ 215
               IDS  K +  D    +F  + +   +P + T++S+I    NYG+      A  +  
Sbjct: 243 YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGR---WSDASRLLS 299

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            M   K  P+ +T+  +I  +     +  A ++FDE+ +   D  + T N+++  +CM+ 
Sbjct: 300 DMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHD 359

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335
              EA  +F    +    PD  TY  L   + KA       +L + M + G+V N   + 
Sbjct: 360 RLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYT 419

Query: 336 EALETF 341
             +  F
Sbjct: 420 TLIHGF 425



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 100/228 (43%), Gaps = 5/228 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ LI    K  +    M LF +M   G   +   Y  LI       D   A  
Sbjct: 377 LPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQM 436

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
                F++M   +   PNI+TYN LL    +   +++   +F+ L +S + PDIYTYN +
Sbjct: 437 ----VFKQMVS-DGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIM 491

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
            +   K G +++   +   +     KPD+I +N +I  + K+   ++   +F  +     
Sbjct: 492 SEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGP 551

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
            P   T+N++I  + +   +  +  + ++M + ++     TY  +  M
Sbjct: 552 LPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDM 599



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 5/163 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R  + +T  Y+ LI    +      A  +F +M + G  P+   YN L+          
Sbjct: 408 RRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLE 467

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           KA+     Y QK K ME   P+I TYNI+     +A  V+    LF  L    + PD+  
Sbjct: 468 KAMV-VFEYLQKSK-ME---PDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIA 522

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
           YN ++  + K G+ +E  ++  +MK +   PD  T+N LI ++
Sbjct: 523 YNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAH 565



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 118/279 (42%), Gaps = 5/279 (1%)

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L +A+  F +M    R  P+IV ++ LL A A+ +  D V +  +++    ++ ++YTYN
Sbjct: 46  LDEAVDLFGEMVK-SRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYN 104

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++   +   +    ++L +M      P I+T N L++ +       +   +   ++  
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 164

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVS 243
             +P   TF +++    +     +A  + ++M      P  +TY  +I   G C      
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVIN--GLCKRGEPD 222

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  + +++ K   +  V   + ++++ C      +A  LF    N G+ PD  TY  L 
Sbjct: 223 LALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLI 282

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
                        +LL  M +  I PN   F   ++ F+
Sbjct: 283 SCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFA 321


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 152/325 (46%), Gaps = 11/325 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++  + + G+   A  LF +M   GC  +   YNALI        K + + +A
Sbjct: 44  DVATYTIIVDRLCRAGKVDEADELFHKMIERGCSANTVAYNALINGLC----KDENIERA 99

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
               ++M  KG E   P+ +TYN +L    +   V +    F  +     +PD+  YNG+
Sbjct: 100 YKLLEEMASKGYE---PDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGL 156

Query: 128 MDAYGKNGMIKEMESVLSRMK--SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
           +DA  K G + E   +   M     +  PD+IT+N LID + + +  D+  ++FK ++  
Sbjct: 157 LDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAK 216

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P   T+NS+++   +     +AE +F+KM      P+  TY  +++ +    N++R 
Sbjct: 217 GYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARC 276

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            E+++E+++      V   NA+++  C      +A  + E    +G  PD  TY +L   
Sbjct: 277 LELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDG 336

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
             K N+ +   +L   M  NG  P+
Sbjct: 337 LCKTNLVDKAHELFSTMVDNGCAPD 361



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 153/333 (45%), Gaps = 7/333 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R   A+T  Y+ LI  + K      A  L  EM + G  PD   YN +++       + 
Sbjct: 73  ERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLC----RM 128

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFK--ELHESILAPDI 121
             +++A  +F  M       P++V YN LL A  +   V +   LFK  ++ +  +APD+
Sbjct: 129 GKVSEAKQFFDSMPSRGY-SPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDL 187

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TYN ++D + +     E   +   + +    PD +T+N ++    ++   D+ E++FK 
Sbjct: 188 ITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKK 247

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++ S   P   T++ ++  + +     +   ++++MT  +++P  +    +I M      
Sbjct: 248 MVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKK 307

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           V  A ++ +E+SK+G    V T N +L+  C   L  +A  LF    + G  PD  +Y +
Sbjct: 308 VDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSV 367

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           +     K N     + L  RM +  +VP+   F
Sbjct: 368 VLNGLCKTNKVHDARVLFDRMIERKLVPDVVTF 400



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 154/330 (46%), Gaps = 11/330 (3%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           + Y+ DT  Y+ ++  + +K     A  +F +M +SGC P+ + Y+ +++ H     +  
Sbjct: 216 KGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHC----RVG 271

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            +A+ L  +++M   +R  P+++  N ++    +A+ VD  + + +E+ +    PD+ TY
Sbjct: 272 NMARCLELYEEMTE-KRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTY 330

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++D   K  ++ +   + S M  N C PDI++++++++   K         +F  ++ 
Sbjct: 331 NILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIE 390

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--V 242
            K  P + TFN ++    KA    +A+ +   M+     P  +T  C   M+G C +   
Sbjct: 391 RKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVT--CTTLMHGLCRDKRT 448

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN--SHNMGVTPDSSTYK 300
             A  +F  + + G    V   N +L   C  G   +A L F++    +   +PD  TY 
Sbjct: 449 DEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYT 508

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            L  A  +A   +      ++M  +G  P+
Sbjct: 509 TLVNALIEAGRVDQAVDYFQQMTGSGCAPD 538



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 151/329 (45%), Gaps = 9/329 (2%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           + Y  D   Y+ +++ + + G+   A   F  M + G  PD   YN L+ A L+   K  
Sbjct: 109 KGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDA-LYKEGK-- 165

Query: 65  ALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            +A+A G F+ M   +R   P+++TYN L+    +    D+   LFK++      PD  T
Sbjct: 166 -VAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVT 224

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++    +   + E E +  +M  + C P+  T+++++  + +     +  ++++ + 
Sbjct: 225 YNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMT 284

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN-- 241
             +  P +   N++I    KA+    A  V ++M+ +   P  +TY   I + G C    
Sbjct: 285 EKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYN--ILLDGLCKTNL 342

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           V +A E+F  +   G    + + + +L   C      +A +LF+      + PD  T+ +
Sbjct: 343 VDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNI 402

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           L     KA   +  + LL  M ++ ++P+
Sbjct: 403 LMDGLCKAGKLDEAKDLLDVMSEHNVLPD 431



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 140/333 (42%), Gaps = 17/333 (5%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFS--EMRNSGCRPDPSVYNALITA--HLHTR 60
           R Y  D   Y+ L+  + K+G+   A  LF   +M +    PD   YN LI     +   
Sbjct: 144 RGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKT 203

Query: 61  DKAKALAK---ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
           D+A  L K   A GY           P+ VTYN +L   A+  N+D+   +FK++ +S  
Sbjct: 204 DEAMKLFKDVIAKGYM----------PDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGC 253

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
           AP+  TY+ V+  + + G +     +   M   +  PD++  N +ID   K +  D   +
Sbjct: 254 APNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHK 313

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           V + +      P + T+N ++    K  L  KA  +F  M      P  ++Y  ++    
Sbjct: 314 VLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLC 373

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
             + V  AR +FD + +      V T N +++  C  G   EA  L +      V PD  
Sbjct: 374 KTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGV 433

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           T   L     +    +   +L + M + G V +
Sbjct: 434 TCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVAD 466



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 121/259 (46%), Gaps = 11/259 (4%)

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           KG E   P++VTY+ ++    +   V +   + +E+ E  + PD+ TY  ++D   + G 
Sbjct: 4   KGFE---PDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           + E + +  +M    C  + + +N LI+   K +  ++  ++ + +     +P   T+N+
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           ++    +     +A+  F  M +  Y+P  + Y  ++        V+ A  +F  +    
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDM-- 178

Query: 257 KDMKVS----TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK-LLYKAYTKANM 311
            D KV+    T N +++ +C      EA  LF++    G  PD+ TY  +L     K+NM
Sbjct: 179 ADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNM 238

Query: 312 KELVQKLLKRMEQNGIVPN 330
            E  +++ K+M  +G  PN
Sbjct: 239 DE-AEEMFKKMVDSGCAPN 256



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 9/225 (4%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ L+  + K      A  LFS M ++GC PD   Y+ ++        K   + 
Sbjct: 324 VPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLC----KTNKVH 379

Query: 68  KALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            A   F +M  +ER   P++VT+NIL+    +A  +D+   L   + E  + PD  T   
Sbjct: 380 DARVLFDRM--IERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTT 437

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +M    ++    E   +   M       D++  N+++    +     +    FKS++ S 
Sbjct: 438 LMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSD 497

Query: 187 EK--PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
            +  P + T+ +++    +A    +A   FQ+MT     P ++ Y
Sbjct: 498 GEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAY 542



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 26  QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM-KGMERCKP 84
           +T  A+ LF  M   G   D   +N ++ A L    K   LA+AL +F+ M K      P
Sbjct: 447 RTDEAVRLFQYMVEKGTVADVLPHN-IVLAGLCREGK---LAQALLFFKSMVKSDGEFSP 502

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           ++VTY  L+ A  +A  VDQ    F+++  S  APD   YN +M+   K G   + + + 
Sbjct: 503 DVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLT 562

Query: 145 SRMK 148
             MK
Sbjct: 563 QAMK 566



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 10/182 (5%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R  + D   ++ L+  + K G+   A  L   M      PD      L+  H   RDK 
Sbjct: 390 ERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLM--HGLCRDKR 447

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI--LAPDI 121
              A  L  +   KG      +++ +NI+L    +   + Q    FK + +S    +PD+
Sbjct: 448 TDEAVRLFQYMVEKGT---VADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDV 504

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY---GKRQAFDKMEQV 178
            TY  +++A  + G + +      +M  + C PD + +N L++     G+    D++ Q 
Sbjct: 505 VTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQA 564

Query: 179 FK 180
            K
Sbjct: 565 MK 566



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 50/114 (43%)

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M    + P  +TY  II+       V+ A E+ +E+++ G +  V+T   +++  C  G 
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             EAD LF      G + ++  Y  L     K    E   KLL+ M   G  P+
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPD 114



 Score = 42.7 bits (99), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 9/122 (7%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCR--PDPSVYNALITAHLHTRD 61
           ++  +AD   ++ ++A + ++G+   A+  F  M  S     PD   Y  L+ A +    
Sbjct: 460 EKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALI---- 515

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC-AQARNVDQVNALFKELHESILAPD 120
           +A  + +A+ YFQ+M G   C P+ V YN L+     Q R++ Q + L + + E     D
Sbjct: 516 EAGRVDQAVDYFQQMTG-SGCAPDYVAYNTLMNGLRKQGRHI-QADRLTQAMKEKGFLSD 573

Query: 121 IY 122
            +
Sbjct: 574 CF 575


>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
 gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
          Length = 773

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 156/331 (47%), Gaps = 6/331 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ+Q+W      IY+ +I +MG++G       +F +M  +  + +   + ALI A+    
Sbjct: 72  MQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAY---- 127

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAP 119
            +      +L    +MK  E+ +PN++TYN +L AC++   + + +  LF ++    + P
Sbjct: 128 GRNGQYEASLHLLARMK-KEQVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQP 186

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D+ TYN ++ A    G++++   V   M  +    D +T+  L+D++       ++E++ 
Sbjct: 187 DLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELL 246

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           + +      P +  +NS+I  Y  A     A  VF++M      P   TY  ++ +YG  
Sbjct: 247 REMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQ 306

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
               + R +F ++  L     V+T N++++ +   G   E+  LF +  + GV PD +TY
Sbjct: 307 GCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATY 366

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             L     +  +     K+ + M  N   P+
Sbjct: 367 SALLSVCGRGGLTREAAKIHQHMLTNESTPS 397



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 142/315 (45%), Gaps = 5/315 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L++    +G    A  +F  M  SG   D   Y +L+     T   +  L + 
Sbjct: 187 DLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLV----DTFAGSNQLGRV 242

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               ++M+  E   P+I  YN L+ A A A NV     +FK++     APD+ TY+ ++ 
Sbjct: 243 EELLREMED-EGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLR 301

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YG  G  +++ S+ S MK     P + T+N LI  +G+   F +   +F  ++ S  KP
Sbjct: 302 IYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKP 361

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T+++++   G+  L  +A  + Q M   + TPS      +I+ YG       A   +
Sbjct: 362 DDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSY 421

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             + + G D +VS  +A+++ Y   GL  EA       +  G     S+   + +AY+K 
Sbjct: 422 YRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKV 481

Query: 310 NMKELVQKLLKRMEQ 324
            + +   +    ++Q
Sbjct: 482 GLHDEALEFFSELQQ 496



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 133/275 (48%), Gaps = 1/275 (0%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +AL  F+ M+  + CKP    Y I++    +   +++ + +F+++ E+ +  ++Y +  +
Sbjct: 64  RALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTAL 123

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA-FDKMEQVFKSLMHSK 186
           ++AYG+NG  +    +L+RMK  Q +P++IT+N ++++  K    ++ +  +F  + H  
Sbjct: 124 INAYGRNGQYEASLHLLARMKKEQVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEG 183

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P L T+N+++       L  +A  VF+ M         +TY+ ++  +   + + R  
Sbjct: 184 IQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVE 243

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+  E+   G    ++  N+++EAY   G    A  +F+     G  PD  TY  L + Y
Sbjct: 244 ELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIY 303

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
                 E V+ L   M+     P    +   ++ F
Sbjct: 304 GNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVF 338



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 113/275 (41%), Gaps = 39/275 (14%)

Query: 81  RCKPNIVTYNILLRACAQARNVDQVNALFKELH-ESILAPDIYTYNGVMDAYGKNGMIKE 139
           R K  +  ++++ R  A   +  +   LFK +  +    P  + Y  ++   G+ G++++
Sbjct: 41  RSKLTMQDFSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEK 100

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
              +   M  N  K ++  F  LI++YG+   ++    +   +   + +P L T+N+++ 
Sbjct: 101 CSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKEQVEPNLITYNTVLN 160

Query: 200 NYGKARLQGKAEY-VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 258
              K  L  +    +F +M      P  ITY                             
Sbjct: 161 ACSKGGLDWEGLLNLFAQMRHEGIQPDLITY----------------------------- 191

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
                 N +L A    GL  +A ++F+  +  GV  D+ TYK L   +  +N    V++L
Sbjct: 192 ------NTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEEL 245

Query: 319 LKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSA 353
           L+ ME  G  P+   +   +E ++   AG+  G+A
Sbjct: 246 LREMEDEGNPPDIAGYNSLIEAYAD--AGNVHGAA 278



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/262 (20%), Positives = 104/262 (39%), Gaps = 42/262 (16%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---------------HLH 58
           Y+ LI V G+ G  + ++ LF +M +SG +PD + Y+AL++                H+ 
Sbjct: 331 YNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHML 390

Query: 59  TRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
           T +   +L  + G       M   K  +V+Y                      + E+ L 
Sbjct: 391 TNESTPSLEASAGLISSYGKMAMYKDALVSY--------------------YRIREAGLD 430

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           P +  Y+ ++  Y K G+  E  S L  M     +  + + N ++++Y K    D+  + 
Sbjct: 431 PQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVGLHDEALEF 490

Query: 179 FKSLMHSK----EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
           F  L   +    ++ T  T   +  + G    + K E+V  K T+    P    Y  +++
Sbjct: 491 FSELQQKEGSEVDERTHETLLGVYCDMGLLE-EAKEEFVIIKETSK--VPGARVYCLLLS 547

Query: 235 MYGYCDNVSRAREIFDELSKLG 256
           +         A ++ DE+   G
Sbjct: 548 LCVRRSKWDYATQLLDEMIAAG 569


>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 879

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 159/310 (51%), Gaps = 7/310 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q  +  D   Y+ ++ ++G+  +      L  +M   GC+P+   YN LI    H+ 
Sbjct: 373 LKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLI----HSY 428

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +A  L +AL  F +M+ M  C+P+ VTY  L+   A+A  +D   ++++ + E  L+PD
Sbjct: 429 GRANYLREALNVFNQMQEMG-CEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPD 487

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            +TY+ +++  GK+G +     +   M    C P+I+T+N+LI    K + +    ++++
Sbjct: 488 TFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALELYR 547

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            + ++  KP   T++ ++   G      +AE VF +M    + P    Y  ++ ++G   
Sbjct: 548 DMQNAGFKPDKVTYSIVMEVLGHCGYLEEAEAVFFEMRQNHWVPDEPVYGLLVDLWGKAG 607

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYC-MNGLPTEADLLFENSHNMGVTPDSSTY 299
           NV +A E +  + + G    V T N++L A+  ++ LP   +LL +N   +G+ P   TY
Sbjct: 608 NVEKAWEWYHTMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLL-QNMVTLGLNPSLQTY 666

Query: 300 KLLYKAYTKA 309
            LL    T+A
Sbjct: 667 TLLLSCCTEA 676



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 121/263 (46%), Gaps = 2/263 (0%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A+G+F  +K       +  TY  ++    +AR    +N L +++ +    P++ TYN ++
Sbjct: 366 AVGFFCWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLI 425

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            +YG+   ++E  +V ++M+   C+PD +T+  LID + K    D    +++ +      
Sbjct: 426 HSYGRANYLREALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLS 485

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   T++ MI   GK+     A  +F +M      P+ +TY  +I +     N   A E+
Sbjct: 486 PDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALEL 545

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKLLYKAYT 307
           + ++   G      T + ++E     G   EA+ + FE   N  V PD   Y LL   + 
Sbjct: 546 YRDMQNAGFKPDKVTYSIVMEVLGHCGYLEEAEAVFFEMRQNHWV-PDEPVYGLLVDLWG 604

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           KA   E   +    M + G++PN
Sbjct: 605 KAGNVEKAWEWYHTMLRAGLLPN 627



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 95/215 (44%)

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D +TY  ++   G+      +  +L +M  + C+P+++T+N LI SYG+     +   VF
Sbjct: 382 DGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLREALNVF 441

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             +     +P   T+ ++I  + KA     A  ++++M  +  +P   TY  +I   G  
Sbjct: 442 NQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKS 501

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            N+S A  +F E+   G    + T N ++           A  L+ +  N G  PD  TY
Sbjct: 502 GNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALELYRDMQNAGFKPDKVTY 561

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            ++ +        E  + +   M QN  VP++  +
Sbjct: 562 SIVMEVLGHCGYLEEAEAVFFEMRQNHWVPDEPVY 596



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 103/231 (44%), Gaps = 13/231 (5%)

Query: 121 IYTYNGVMDAYGKNGMIKEME------SVLSRMKSNQCKP----DIITFNLLIDSYGKRQ 170
           +Y  N  +DAY  N ++K+++           +K    +P    D  T+  ++   G+ +
Sbjct: 341 LYNLNFSIDAYQANQILKQLQDHSVAVGFFCWLKR---QPGFWHDGHTYTTMVGILGRAR 397

Query: 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
            F  + ++ + ++    +P + T+N +I +YG+A    +A  VF +M  M   P  +TY 
Sbjct: 398 EFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLREALNVFNQMQEMGCEPDRVTYC 457

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
            +I ++     +  A  +++ + ++G      T + M+     +G  + A  LF    + 
Sbjct: 458 TLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQ 517

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           G  P+  TY +L     KA   +   +L + M+  G  P+K  +   +E  
Sbjct: 518 GCVPNIVTYNILIALQAKARNYQTALELYRDMQNAGFKPDKVTYSIVMEVL 568



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 40/197 (20%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  YS +I  +GK G    A  LF EM + GC P+   YN LI      + KA+    A
Sbjct: 487 DTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIA----LQAKARNYQTA 542

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  ++ M+     KP+ VTY+I++        +++  A+F E+ ++   PD   Y  ++D
Sbjct: 543 LELYRDMQNAG-FKPDKVTYSIVMEVLGHCGYLEEAEAVFFEMRQNHWVPDEPVYGLLVD 601

Query: 130 AYGKNGMIK-----------------------------------EMESVLSRMKSNQCKP 154
            +GK G ++                                   +  ++L  M +    P
Sbjct: 602 LWGKAGNVEKAWEWYHTMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNP 661

Query: 155 DIITFNLLIDSYGKRQA 171
            + T+ LL+    + Q+
Sbjct: 662 SLQTYTLLLSCCTEAQS 678


>gi|255577248|ref|XP_002529506.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531022|gb|EEF32875.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 808

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 165/367 (44%), Gaps = 14/367 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+ Q+ Y A T +Y+ +I +  +   T  A  LF EM+   C+PD   YNALI AH    
Sbjct: 133 MKLQKNYCARTDMYNMMIRLHARHNLTDQARGLFFEMQEWRCKPDSETYNALINAH---- 188

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +A     A+   + M   E   P+  TYN L+ AC  + N  +   + K++ E+ + PD
Sbjct: 189 GRAGQWRWAMNIMEDML-REAIPPSRSTYNNLINACGSSGNWREALKVSKQMTENGVGPD 247

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + T+N V+ AY       +  S    MK    +PD  T N++I    K    +K   +F 
Sbjct: 248 LVTHNIVLSAYKTGAQYSKALSYFELMKGTNIRPDTTTRNIVIYCLVKLGQCEKAIDIFN 307

Query: 181 SLMHSKE--KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           S+   +   +P + TF S+I  Y  +      + VF  M A   TP+ ++Y  +I  Y +
Sbjct: 308 SMREKRAECRPDIVTFTSIIHLYSLSGQVENCKAVFSTMLAEGLTPTIVSYNALIGAYAF 367

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
                 A  +F ++   G    V +  ++L +Y  +  P +A  +F       + P+  +
Sbjct: 368 HGMSEEALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQPKKAREMFNMMKKAKLKPNVVS 427

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLT 358
           +  L  AY    +     K+L+ MEQ+GI PN       + T  + LA       K ++ 
Sbjct: 428 FNALIDAYGSNGLLADAVKVLREMEQDGIHPN-------IVTICTLLAACGRCGQKVNID 480

Query: 359 RSLSTAK 365
             LS AK
Sbjct: 481 AVLSAAK 487



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 142/331 (42%), Gaps = 40/331 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI   G  G  R A+ +  +M  +G  PD   +N +++A+          +KAL YF
Sbjct: 216 YNNLINACGSSGNWREALKVSKQMTENGVGPDLVTHNIVLSAY----KTGAQYSKALSYF 271

Query: 74  QKMKGME------------------------------------RCKPNIVTYNILLRACA 97
           + MKG                                       C+P+IVT+  ++   +
Sbjct: 272 ELMKGTNIRPDTTTRNIVIYCLVKLGQCEKAIDIFNSMREKRAECRPDIVTFTSIIHLYS 331

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
            +  V+   A+F  +    L P I +YN ++ AY  +GM +E  SV  ++K++   PD++
Sbjct: 332 LSGQVENCKAVFSTMLAEGLTPTIVSYNALIGAYAFHGMSEEALSVFKKIKASGLLPDVV 391

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           ++  L+ SYG+ +   K  ++F  +  +K KP + +FN++I  YG   L   A  V ++M
Sbjct: 392 SYTSLLSSYGRSKQPKKAREMFNMMKKAKLKPNVVSFNALIDAYGSNGLLADAVKVLREM 451

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
                 P+ +T   ++   G C        +       G  +     N+ + +Y   G  
Sbjct: 452 EQDGIHPNIVTICTLLAACGRCGQKVNIDAVLSAAKMRGIKLNTVACNSAIGSYMNVGEY 511

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            +A  L+ +   M V P+S TY +L     K
Sbjct: 512 EKAVALYNSMRKMKVAPNSVTYTVLISGCCK 542



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 153/336 (45%), Gaps = 12/336 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMR---NSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           + +LI  + ++G    +  +F  M+   N   R D  +YN +I   LH R      A+ L
Sbjct: 110 FPRLIKEITQRGALEHSNLVFRWMKLQKNYCARTD--MYNMMI--RLHARHNLTDQARGL 165

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
            +F+  +   RCKP+  TYN L+ A  +A        + +++    + P   TYN +++A
Sbjct: 166 -FFEMQEW--RCKPDSETYNALINAHGRAGQWRWAMNIMEDMLREAIPPSRSTYNNLINA 222

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
            G +G  +E   V  +M  N   PD++T N+++ +Y     + K    F+ +  +  +P 
Sbjct: 223 CGSSGNWREALKVSKQMTENGVGPDLVTHNIVLSAYKTGAQYSKALSYFELMKGTNIRPD 282

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT--PSFITYECIITMYGYCDNVSRAREI 248
             T N +I    K     KA  +F  M   +    P  +T+  II +Y     V   + +
Sbjct: 283 TTTRNIVIYCLVKLGQCEKAIDIFNSMREKRAECRPDIVTFTSIIHLYSLSGQVENCKAV 342

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F  +   G    + + NA++ AY  +G+  EA  +F+     G+ PD  +Y  L  +Y +
Sbjct: 343 FSTMLAEGLTPTIVSYNALIGAYAFHGMSEEALSVFKKIKASGLLPDVVSYTSLLSSYGR 402

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           +   +  +++   M++  + PN   F   ++ + S+
Sbjct: 403 SKQPKKAREMFNMMKKAKLKPNVVSFNALIDAYGSN 438



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 139/329 (42%), Gaps = 5/329 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI      G +  A+ +F +++ SG  PD   Y +L++++     ++K   KA   F
Sbjct: 358 YNALIGAYAFHGMSEEALSVFKKIKASGLLPDVVSYTSLLSSY----GRSKQPKKAREMF 413

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             MK   + KPN+V++N L+ A      +     + +E+ +  + P+I T   ++ A G+
Sbjct: 414 NMMKK-AKLKPNVVSFNALIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICTLLAACGR 472

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G    +++VLS  K    K + +  N  I SY     ++K   ++ S+   K  P   T
Sbjct: 473 CGQKVNIDAVLSAAKMRGIKLNTVACNSAIGSYMNVGEYEKAVALYNSMRKMKVAPNSVT 532

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +  +I    K    GKA   F  M  +K   +      +I  Y     ++ A  IF  + 
Sbjct: 533 YTVLISGCCKMSKYGKAIEFFADMMELKIALTKEVCSSVICAYSKQGQITEAESIFTMMK 592

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    + T  AML AY       +A  L +   +  +  D+     L +A+ K     
Sbjct: 593 MAGCCPDIITFTAMLHAYNAGEHWGKACDLIQEMEDYDIQLDTIACSALMRAFNKRGNPS 652

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            V  L + M++  I  +   F E +   S
Sbjct: 653 QVLILAEFMKEKEIPFSDAIFFEMVSACS 681



 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 87/191 (45%), Gaps = 11/191 (5%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           + S +I    K+GQ   A  +F+ M+ +GC PD   +    TA LH  +  +   KA   
Sbjct: 567 VCSSVICAYSKQGQITEAESIFTMMKMAGCCPDIITF----TAMLHAYNAGEHWGKACDL 622

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            Q+M+  +  + + +  + L+RA  +  N  QV  L + + E  +      +  ++ A  
Sbjct: 623 IQEMEDYD-IQLDTIACSALMRAFNKRGNPSQVLILAEFMKEKEIPFSDAIFFEMVSAC- 680

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNL---LIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              ++++  ++L+ MK  +    +++  L   L+   G+    + M ++F  +  S  + 
Sbjct: 681 --SLLRDWRTILNLMKLMEPSFSVVSIGLLNQLLHVLGRSGKIESMMKLFYKITASGAEI 738

Query: 190 TLPTFNSMIIN 200
              T++ M+ N
Sbjct: 739 NFNTYSIMLKN 749


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 159/336 (47%), Gaps = 19/336 (5%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEM------RNSGCRPDPSVYNALITAHL 57
           +R Y  D   +S LI  + K  + + A      M      R S C    S+ N+L     
Sbjct: 77  KRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLNSLC---- 132

Query: 58  HTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
               KAK + +A   F  M       P++V+Y+IL+    +   + +   L+K++ +   
Sbjct: 133 ----KAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNC 188

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
            P++ TYN  ++   + G I + + V   M S  C PD+IT++ LI  +   +  D+  +
Sbjct: 189 VPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHE 248

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           +F++++    +P   T+N ++    K     +A  +F+KM      P  +TY  +  +YG
Sbjct: 249 LFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTL--LYG 306

Query: 238 YCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           +C+   + +A E+FDE+   G D  V   N +L+ +   G P EA  LF+   +    PD
Sbjct: 307 FCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPD 366

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQN-GIVPN 330
           + ++ ++    +KA   +   ++ +RMEQ+ G  P+
Sbjct: 367 TVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPD 402



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 141/313 (45%), Gaps = 6/313 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  +R  + D   YS LI    K  +   A  L+ +M +  C P+ + YNA +   +   
Sbjct: 147 MVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLM--- 203

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +   +A A G +++M     C P+++TY+ L+   + AR  DQ + LF+ +      P+
Sbjct: 204 -RKGRIADAQGVYEEMISA-GCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPN 261

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TYN ++    K     E   +  +M    C PD +T+  L+  +      ++  +VF 
Sbjct: 262 AVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFD 321

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++     P +  +N ++  + +A   G+A  +FQ M + +  P  +++  +I       
Sbjct: 322 EMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAK 381

Query: 241 NVSRAREIFDELSK-LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            +  A E+F+ + +  G    + T N+++   C     +EA  +F+    + ++PD   +
Sbjct: 382 RLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAF 441

Query: 300 KLLYKAYTKANMK 312
            +L +A   A  K
Sbjct: 442 NVLLEAMYAAGHK 454



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 121/272 (44%), Gaps = 4/272 (1%)

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI--LAP 119
           KA  +  AL   + M     C P++ T+++L+    +A  + +     + ++ +I   A 
Sbjct: 61  KAGRVDSALSLLETMIKRGYC-PDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRAS 119

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQV 178
             ++YN ++++  K   + +  ++ S M S +   PD++++++LID + K     + E++
Sbjct: 120 SCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKL 179

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           +K ++     P + T+N+ +    +      A+ V+++M +   +P  ITY  +I  +  
Sbjct: 180 YKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSL 239

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
                +A E+F+ +   G      T N +L   C    P EA  LF      G  PD  T
Sbjct: 240 ARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVT 299

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y  L   +      E   ++   M   G  P+
Sbjct: 300 YTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPD 331



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/250 (19%), Positives = 116/250 (46%), Gaps = 12/250 (4%)

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM- 147
           ++++   C   R VD   +L + + +    PD+ T++ +++   K   I+E +  L  M 
Sbjct: 53  HSVIQELCKAGR-VDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMN 111

Query: 148 -----KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTFNSMIINY 201
                +++ C     ++N L++S  K +   +   +F +++  +   P + +++ +I  +
Sbjct: 112 RTISTRASSC----FSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGF 167

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            K    G+AE ++++M  +   P+  TY   +        ++ A+ +++E+   G    V
Sbjct: 168 CKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDV 227

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T + ++  + +     +A  LFE   + G  P++ TY  L     K +  +   +L ++
Sbjct: 228 ITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRK 287

Query: 322 MEQNGIVPNK 331
           M + G  P+K
Sbjct: 288 MVERGCDPDK 297


>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Glycine max]
          Length = 576

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 149/348 (42%), Gaps = 40/348 (11%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+  I  + K G +  A  +F  M+   C+P    Y  LI  +     KA     AL  
Sbjct: 227 VYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETYTMLINLY----GKAGKSFMALKL 282

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F +M   + CKPNI TY  L+ A A+    ++   +F+++ E+ L PD+Y YN +M+AY 
Sbjct: 283 FHEMMSHD-CKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYS 341

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + G       + S M+   C+PD  ++N+L+D+YGK    D  E VFK +      PT+ 
Sbjct: 342 RAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMK 401

Query: 193 T-----------------------------------FNSMIINYGKARLQGKAEYVFQKM 217
           +                                    NSM+  YG+    GK E V + M
Sbjct: 402 SHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVM 461

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
               Y     TY  +I  YG    + R  ++F  L   G    V T  + + AY    L 
Sbjct: 462 EKGSYVADISTYNILINRYGQAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAYSKKKLY 521

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            +   +FE   + G  PD  T K+L  A +  +  E V  +++ M ++
Sbjct: 522 LKCLEIFEEMIDDGCYPDGGTAKVLLAACSNEDQTEQVTTVIRTMHKD 569



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 131/260 (50%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           KP+++ YN+L+ A  Q     +  + + +L E+   P   TY  ++ AY  +G++++ E+
Sbjct: 152 KPDVICYNLLIEAFGQKLLYKEAESTYLQLLEARCIPTEDTYALLIKAYCISGLLEKAEA 211

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           V + M++       + +N  I+   K    DK E++FK +     KPT  T+  +I  YG
Sbjct: 212 VFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETYTMLINLYG 271

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           KA     A  +F +M +    P+  TY  ++  +       +A E+F+++ + G +  V 
Sbjct: 272 KAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVY 331

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
             NA++EAY   G P  A  +F    +MG  PD ++Y +L  AY KA  ++  + + K M
Sbjct: 332 AYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDM 391

Query: 323 EQNGIVPNKRFFLEALETFS 342
           ++ GI P  +  +  L  +S
Sbjct: 392 KRVGITPTMKSHMVLLSAYS 411



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 137/288 (47%), Gaps = 5/288 (1%)

Query: 40  SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 99
           S  +PD   YN LI A        +A +    Y Q ++   RC P   TY +L++A   +
Sbjct: 149 SSFKPDVICYNLLIEAFGQKLLYKEAEST---YLQLLEA--RCIPTEDTYALLIKAYCIS 203

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
             +++  A+F E+    L      YN  ++   K G   + E +  RMK + CKP   T+
Sbjct: 204 GLLEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETY 263

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
            +LI+ YGK        ++F  +M    KP + T+ +++  + +  L  KAE VF++M  
Sbjct: 264 TMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQE 323

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
               P    Y  ++  Y        A EIF  +  +G +   ++ N +++AY   G   +
Sbjct: 324 AGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDD 383

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           A+ +F++   +G+TP   ++ +L  AY+K       +++L +M ++G+
Sbjct: 384 AEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGL 431



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 92/391 (23%), Positives = 161/391 (41%), Gaps = 59/391 (15%)

Query: 5   RWYI------ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH 58
           RW +       D   Y+ LI   G+K   + A   + ++  + C P    Y  LI A+  
Sbjct: 143 RWILLRSSFKPDVICYNLLIEAFGQKLLYKEAESTYLQLLEARCIPTEDTYALLIKAYCI 202

Query: 59  TRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
           +      L KA   F +M+       + V YN  +    +  N D+   +FK + +    
Sbjct: 203 S----GLLEKAEAVFAEMRNY-GLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACK 257

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           P   TY  +++ YGK G       +   M S+ CKP+I T+  L++++ +    +K E+V
Sbjct: 258 PTTETYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEV 317

Query: 179 FK----------------------------------SLM-HSKEKPTLPTFNSMIINYGK 203
           F+                                  SLM H   +P   ++N ++  YGK
Sbjct: 318 FEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGK 377

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A  Q  AE VF+ M  +  TP+  ++  +++ Y    +V++  EI +++ K G  +    
Sbjct: 378 AGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYV 437

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
           LN+ML  Y   G   + + +           D STY +L   Y +A   E ++ L + + 
Sbjct: 438 LNSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGFIERMEDLFQLLP 497

Query: 324 QNGIVPN-------------KRFFLEALETF 341
             G+ P+             K+ +L+ LE F
Sbjct: 498 SKGLKPDVVTWTSRIGAYSKKKLYLKCLEIF 528



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 5/110 (4%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y+AD   Y+ LI   G+ G       LF  + + G +PD   + + I A+     K K  
Sbjct: 466 YVADISTYNILINRYGQAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAY----SKKKLY 521

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
            K L  F++M   + C P+  T  +LL AC+     +QV  + + +H+ +
Sbjct: 522 LKCLEIFEEMID-DGCYPDGGTAKVLLAACSNEDQTEQVTTVIRTMHKDM 570



 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 31/162 (19%), Positives = 64/162 (39%), Gaps = 36/162 (22%)

Query: 169 RQAFDKMEQVFKS-LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
           R+ +D +  + +  L+ S  KP +  +N +I  +G+  L  +AE  + ++   +  P+  
Sbjct: 132 RKQWDSIISICRWILLRSSFKPDVICYNLLIEAFGQKLLYKEAESTYLQLLEARCIPTED 191

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           TY  +I                                   +AYC++GL  +A+ +F   
Sbjct: 192 TYALLI-----------------------------------KAYCISGLLEKAEAVFAEM 216

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
            N G+   +  Y        K    +  +++ KRM+++   P
Sbjct: 217 RNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKP 258


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 165/327 (50%), Gaps = 15/327 (4%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---HLHTRDKAKA 65
           AD  IY+ +I  + K      A+ LF+EM N G RPD   Y++LI+    +    D ++ 
Sbjct: 256 ADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 315

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L+  +          +  PN+VT++ L+ A  +   + +   L+ E+ +  + PDI+TY+
Sbjct: 316 LSDMIE--------RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 367

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++ +  +  + E + +   M S  C P+++T++ LI  + K +  ++  ++F+ +   
Sbjct: 368 SLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQR 427

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VS 243
                  T+ ++I  + +AR    A+ VF++M ++   P+ +TY   I + G C N  ++
Sbjct: 428 GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYN--ILLDGLCKNGKLA 485

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           +A  +F+ L +   +  + T N M+E  C  G   +   LF N    GV+P+   Y  + 
Sbjct: 486 KAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMI 545

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
             + +   KE    LLK+M+++G +PN
Sbjct: 546 SGFCRKGSKEEADSLLKKMKEDGPLPN 572



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 152/335 (45%), Gaps = 11/335 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS  I    ++ Q  LA+ + ++M   G  PD    ++L+  + H+    K ++ A
Sbjct: 117 DLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHS----KRISDA 172

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +    +M  M   KP+  T+  L+          +  AL  ++ +    PD+ TY  V++
Sbjct: 173 VALVDQMVEMGY-KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVN 231

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K G I    S+L +M+  + + D++ +N +ID   K +  D    +F  + +   +P
Sbjct: 232 GLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRP 291

Query: 190 TLPTFNSMI---INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            + T++S+I    NYG+      A  +   M   K  P+ +T+  +I  +     +  A 
Sbjct: 292 DVFTYSSLISCLCNYGR---WSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 348

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           +++DE+ K   D  + T ++++  +CM+    EA  +FE   +    P+  TY  L K +
Sbjct: 349 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGF 408

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            KA   E   +L + M Q G+V N   +   +  F
Sbjct: 409 CKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGF 443



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 159/363 (43%), Gaps = 48/363 (13%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  DT  ++ LI  +    +   A+ L  +M   GC+PD   Y  ++       D    +
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD----I 239

Query: 67  AKALGYFQKM-KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
             AL   +KM KG  + + ++V YN ++    + +++D    LF E+    + PD++TY+
Sbjct: 240 DLALSLLKKMEKG--KIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYS 297

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++      G   +   +LS M   +  P+++TF+ LID++ K     + E+++  ++  
Sbjct: 298 SLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 357

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII------------ 233
              P + T++S+I  +       +A+++F+ M +    P+ +TY  +I            
Sbjct: 358 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEG 417

Query: 234 ---------------------TMYGY-----CDNVSRAREIFDELSKLGKDMKVSTLNAM 267
                                 ++G+     CDN   A+ +F ++  +G    + T N +
Sbjct: 418 MELFREMSQRGLVGNTVTYTTLIHGFFQARDCDN---AQMVFKQMVSVGVHPNILTYNIL 474

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           L+  C NG   +A ++FE      + PD  TY ++ +   KA   E   +L   +   G+
Sbjct: 475 LDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGV 534

Query: 328 VPN 330
            PN
Sbjct: 535 SPN 537



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 135/315 (42%), Gaps = 44/315 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKALAKALG 71
           +S LI    K+G+   A  L+ EM      PD   Y++LI    +H R D+AK +     
Sbjct: 331 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM----- 385

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            F+ M   + C PN+VTY+ L++   +A+ V++   LF+E+ +  L  +  TY  ++  +
Sbjct: 386 -FELMISKD-CFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGF 443

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            +       + V  +M S    P+I+T+N+L+D   K     K   VF+ L  S  +P +
Sbjct: 444 FQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDI 503

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+N MI    KA   GK E                                   E+F  
Sbjct: 504 YTYNIMIEGMCKA---GKVE--------------------------------DGWELFCN 528

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           LS  G    V   N M+  +C  G   EAD L +     G  P+S TY  L +A  +   
Sbjct: 529 LSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGD 588

Query: 312 KELVQKLLKRMEQNG 326
           +E   +L+K M   G
Sbjct: 589 REASAELIKEMRSCG 603



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 110/260 (42%), Gaps = 4/260 (1%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+IV +N LL A A+    + V +L +++    ++ D+YTY+  ++ + +   +    +V
Sbjct: 81  PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L++M     +PDI+T + L++ Y   +       +   ++    KP   TF ++I     
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKV 261
                +A  +  +M      P  +TY  ++   G C   ++  A  +  ++ K   +  V
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVN--GLCKRGDIDLALSLLKKMEKGKIEADV 258

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
              N +++  C      +A  LF    N G+ PD  TY  L              +LL  
Sbjct: 259 VIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSD 318

Query: 322 MEQNGIVPNKRFFLEALETF 341
           M +  I PN   F   ++ F
Sbjct: 319 MIERKINPNVVTFSALIDAF 338


>gi|302810470|ref|XP_002986926.1| hypothetical protein SELMODRAFT_125134 [Selaginella moellendorffii]
 gi|300145331|gb|EFJ12008.1| hypothetical protein SELMODRAFT_125134 [Selaginella moellendorffii]
          Length = 458

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 152/333 (45%), Gaps = 7/333 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           ++ Q+WY    G Y +++ ++GK  +   A  LF  M   GC P    + AL++A+    
Sbjct: 47  LRSQQWYQPYAGTYIRMLEMLGKCKRPDEAASLFQTMLADGCGPSREAFTALMSAYT--- 103

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  ++ A+   Q M     C P++ TY++L+++C     + +   L  ++    + P+
Sbjct: 104 -RSNLMSTAMEVLQAMNATPHCSPDVFTYSLLIKSCCDCGQLSRAADLLADMTARGIQPN 162

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM---KSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
             TYN ++DAY K G + ++  +  +M    S  C+PD  + N ++  +G R    +ME+
Sbjct: 163 RVTYNIILDAYAKCGSLDKLHDLALQMLQSPSPSCRPDHWSRNAIVKGFGNRGDIRRMEE 222

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
            F+ L    + P   T +S++  Y KA +  K   V + +    Y    +TY  +I  YG
Sbjct: 223 WFQRLTTPSDGPDSLTLHSLMAAYAKAEMFDKMHAVVRYIHRYHYQVDAVTYNILINAYG 282

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
                ++  + F  +   G      T   ++  Y   G+  +   L E      V PD++
Sbjct: 283 RAGRKTQMLKTFTSMKCGGVRPDSVTYCTLINFYGKFGMQRKLPRLLEQMSMHKVQPDTA 342

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            Y  +  AY +A+    + +    M++ G  P+
Sbjct: 343 LYNSVLDAYRRASDISSIDRYFAAMQEQGCKPD 375



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/312 (19%), Positives = 125/312 (40%), Gaps = 39/312 (12%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL  F+ ++  +  +P   TY  +L    + +  D+  +LF+ +      P    +  +M
Sbjct: 40  ALKVFELLRSQQWYQPYAGTYIRMLEMLGKCKRPDEAASLFQTMLADGCGPSREAFTALM 99

Query: 129 DAYGKNGMIKEMESVLSRMKSN-QCKPDI------------------------------- 156
            AY ++ ++     VL  M +   C PD+                               
Sbjct: 100 SAYTRSNLMSTAMEVLQAMNATPHCSPDVFTYSLLIKSCCDCGQLSRAADLLADMTARGI 159

Query: 157 ----ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE---KPTLPTFNSMIINYGKARLQGK 209
               +T+N+++D+Y K  + DK+  +   ++ S     +P   + N+++  +G      +
Sbjct: 160 QPNRVTYNIILDAYAKCGSLDKLHDLALQMLQSPSPSCRPDHWSRNAIVKGFGNRGDIRR 219

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
            E  FQ++T     P  +T   ++  Y   +   +   +   + +    +   T N ++ 
Sbjct: 220 MEEWFQRLTTPSDGPDSLTLHSLMAAYAKAEMFDKMHAVVRYIHRYHYQVDAVTYNILIN 279

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           AY   G  T+    F +    GV PDS TY  L   Y K  M+  + +LL++M  + + P
Sbjct: 280 AYGRAGRKTQMLKTFTSMKCGGVRPDSVTYCTLINFYGKFGMQRKLPRLLEQMSMHKVQP 339

Query: 330 NKRFFLEALETF 341
           +   +   L+ +
Sbjct: 340 DTALYNSVLDAY 351


>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
 gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
          Length = 759

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 160/322 (49%), Gaps = 13/322 (4%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           + S +I+ +G+ G++  A  +F     +G   +  VY++LI A+     ++  LAKA+  
Sbjct: 122 VTSTIISSLGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICAY----GRSGKLAKAVEI 177

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F+ MK +  CKPN+V YN ++ AC++  +      +F+E+ E  ++PD  T+N ++ A G
Sbjct: 178 FEAMKVV--CKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAG 235

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY--GKRQAFDK--MEQVFKSLMHSKEK 188
           +    +E + + + M+      D +T+N LI +Y  G +       ME + KS   S  +
Sbjct: 236 RANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKS---SGIE 292

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P++ T+++MI  Y K  L  +A  +FQ+M      P  I Y  ++ ++    N   A  I
Sbjct: 293 PSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSI 352

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
              + + G    + T NA+L++Y   G   EA  L E     G +P+  TY  L  AY K
Sbjct: 353 RRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCK 412

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
                    L + +++ G+ P+
Sbjct: 413 HGFHRDAMALFQDVKKAGLQPD 434



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 156/321 (48%), Gaps = 11/321 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +YS LI   G+ G+   A+ +F  M+   C+P+  VYNA+I A      K      AL  
Sbjct: 157 VYSSLICAYGRSGKLAKAVEIFEAMKVV-CKPNLVVYNAVIDAC----SKGGDYPTALRI 211

Query: 73  FQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           F++M  +GM    P+ +T+N L+ A  +A   ++ + +F E+ E  +A D  TYN ++  
Sbjct: 212 FREMLEQGMS---PDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIAT 268

Query: 131 YGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           Y + G +    +++  M KS+  +P +IT++ +ID Y K     +   +F+ + +   +P
Sbjct: 269 YCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEP 328

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               +N+M+  + +     +A  + + M    +    +TY  ++  YG       A  + 
Sbjct: 329 DGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLL 388

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +E+ + G    + T +A+++AYC +G   +A  LF++    G+ PD   Y  L     K 
Sbjct: 389 EEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKN 448

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +    LL+ M  NGI PN
Sbjct: 449 GSPDEALALLEEMADNGIRPN 469



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 118/236 (50%), Gaps = 6/236 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEM-RNSGCRPDPSVYNALITAHLHTRD 61
           ++R    D   Y+ LIA   + GQ  L   L   M ++SG  P    Y+ +I  +     
Sbjct: 251 EERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYA---- 306

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           K     +A+  FQ+M+  +  +P+ + YN ++   A+  N D+ +++ + + E+  A DI
Sbjct: 307 KLGLAHEAIALFQEMRN-QNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDI 365

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TYN ++D+YGK G  +E  S+L  MK     P+I+T++ LID+Y K         +F+ 
Sbjct: 366 VTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQD 425

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           +  +  +P +  +++++    K     +A  + ++M      P+ ITY  ++  YG
Sbjct: 426 VKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYG 481



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 141/326 (43%), Gaps = 71/326 (21%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--LHTRDKAKALAKAL- 70
           YS +I    K G    A+ LF EMRN    PD   YN ++  H  L   D+A ++ +A+ 
Sbjct: 298 YSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAME 357

Query: 71  ---------------------GYFQK-MKGMERCK-----PNIVTYNILLRA-CAQARNV 102
                                G F++ M  +E  K     PNI+TY+ L+ A C    + 
Sbjct: 358 EAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHR 417

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           D + ALF+++ ++ L PD+  Y+ ++D   KNG   E  ++L  M  N  +P++IT+N L
Sbjct: 418 DAM-ALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSL 476

Query: 163 IDSYGK-----RQAFDKMEQVFKSLMHSKEKPTL-PTFNSMIINYGKARLQGKAEYVFQK 216
           +D+YG+     R+ F K+       +    KP++     S++    K  L   A  VF++
Sbjct: 477 LDAYGRQCLMVRKTFPKLRFFLLPRVTMLLKPSMQDDQQSLVDPKQKQALVLAAARVFRE 536

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRA------------------------------- 245
           M      P+ +T+  I+    +C +V  A                               
Sbjct: 537 MAKNGVKPNVVTFSSILNACSHCASVEDASNLLEAMRVFDGRVYGVTHGLLMGFRIRVWR 596

Query: 246 --REIFDELSKLGKDMKVSTLNAMLE 269
               +F+EL+ LG +  V+  NA+ +
Sbjct: 597 DAETLFNELTTLGHNTAVAFYNALTD 622



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 88/194 (45%), Gaps = 13/194 (6%)

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF------KSLMHSKEKPTLPT 193
           M ++L ++ ++   PD + F  ++   G    ++K+ + F      ++L    +K T   
Sbjct: 69  MPALLDQVSAHLLGPDDLPF--IVRELGHSGQWEKVVKSFDWMVLQQNLRSQWDKVT--- 123

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            +++I + G+      A+ +F +     +  +   Y  +I  YG    +++A EIF+ + 
Sbjct: 124 -STIISSLGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIFEAMK 182

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
            + K   V   NA+++A    G    A  +F      G++PD  T+  L  A  +AN  E
Sbjct: 183 VVCKPNLV-VYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWE 241

Query: 314 LVQKLLKRMEQNGI 327
              ++   ME+ GI
Sbjct: 242 ECDRIFAEMEERGI 255



 Score = 44.7 bits (104), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 85/202 (42%), Gaps = 46/202 (22%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQR    +   YS LI    K G  R AM LF +++ +G +PD  +Y+ L+        K
Sbjct: 392 KQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCC----K 447

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILL----RACAQARN----------------- 101
             +  +AL   ++M      +PN++TYN LL    R C   R                  
Sbjct: 448 NGSPDEALALLEEMAD-NGIRPNVITYNSLLDAYGRQCLMVRKTFPKLRFFLLPRVTMLL 506

Query: 102 -----------VD--QVNAL-------FKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
                      VD  Q  AL       F+E+ ++ + P++ T++ +++A      +++  
Sbjct: 507 KPSMQDDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSILNACSHCASVEDAS 566

Query: 142 SVLSRMKSNQCKPDIITFNLLI 163
           ++L  M+    +   +T  LL+
Sbjct: 567 NLLEAMRVFDGRVYGVTHGLLM 588


>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
 gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
          Length = 760

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 160/322 (49%), Gaps = 13/322 (4%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           + S +I+ +G+ G++  A  +F     +G   +  VY++LI A+     ++  LAKA+  
Sbjct: 123 VTSTIISSLGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICAY----GRSGKLAKAVEI 178

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F+ MK +  CKPN+V YN ++ AC++  +      +F+E+ E  ++PD  T+N ++ A G
Sbjct: 179 FEAMKVV--CKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAG 236

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY--GKRQAFDK--MEQVFKSLMHSKEK 188
           +    +E + + + M+      D +T+N LI +Y  G +       ME + KS   S  +
Sbjct: 237 RANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKS---SGIE 293

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P++ T+++MI  Y K  L  +A  +FQ+M      P  I Y  ++ ++    N   A  I
Sbjct: 294 PSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSI 353

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
              + + G    + T NA+L++Y   G   EA  L E     G +P+  TY  L  AY K
Sbjct: 354 RRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCK 413

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
                    L + +++ G+ P+
Sbjct: 414 HGFHRDAMALFQDVKKAGLQPD 435



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 156/321 (48%), Gaps = 11/321 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +YS LI   G+ G+   A+ +F  M+   C+P+  VYNA+I A      K      AL  
Sbjct: 158 VYSSLICAYGRSGKLAKAVEIFEAMKVV-CKPNLVVYNAVIDAC----SKGGDYPTALRI 212

Query: 73  FQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           F++M  +GM    P+ +T+N L+ A  +A   ++ + +F E+ E  +A D  TYN ++  
Sbjct: 213 FREMLEQGMS---PDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIAT 269

Query: 131 YGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           Y + G +    +++  M KS+  +P +IT++ +ID Y K     +   +F+ + +   +P
Sbjct: 270 YCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEP 329

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               +N+M+  + +     +A  + + M    +    +TY  ++  YG       A  + 
Sbjct: 330 DGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLL 389

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +E+ + G    + T +A+++AYC +G   +A  LF++    G+ PD   Y  L     K 
Sbjct: 390 EEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKN 449

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +    LL+ M  NGI PN
Sbjct: 450 GSPDEALALLEEMADNGIRPN 470



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 118/236 (50%), Gaps = 6/236 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEM-RNSGCRPDPSVYNALITAHLHTRD 61
           ++R    D   Y+ LIA   + GQ  L   L   M ++SG  P    Y+ +I  +     
Sbjct: 252 EERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYA---- 307

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           K     +A+  FQ+M+  +  +P+ + YN ++   A+  N D+ +++ + + E+  A DI
Sbjct: 308 KLGLAHEAIALFQEMRN-QNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDI 366

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TYN ++D+YGK G  +E  S+L  MK     P+I+T++ LID+Y K         +F+ 
Sbjct: 367 VTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQD 426

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           +  +  +P +  +++++    K     +A  + ++M      P+ ITY  ++  YG
Sbjct: 427 VKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYG 482



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 141/326 (43%), Gaps = 71/326 (21%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--LHTRDKAKALAKAL- 70
           YS +I    K G    A+ LF EMRN    PD   YN ++  H  L   D+A ++ +A+ 
Sbjct: 299 YSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAME 358

Query: 71  ---------------------GYFQK-MKGMERCK-----PNIVTYNILLRA-CAQARNV 102
                                G F++ M  +E  K     PNI+TY+ L+ A C    + 
Sbjct: 359 EAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHR 418

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           D + ALF+++ ++ L PD+  Y+ ++D   KNG   E  ++L  M  N  +P++IT+N L
Sbjct: 419 DAM-ALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSL 477

Query: 163 IDSYGK-----RQAFDKMEQVFKSLMHSKEKPTLP-TFNSMIINYGKARLQGKAEYVFQK 216
           +D+YG+     R+ F K+       +    KP++     S++    K  L   A  VF++
Sbjct: 478 LDAYGRQCLMVRKNFPKLRFFLLPRVTMLLKPSVDYDQQSLVDPKQKQALVLAAARVFRE 537

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRA------------------------------- 245
           M      P+ +T+  I+    +C +V  A                               
Sbjct: 538 MAKNGVKPNVVTFSSILNACSHCASVEDASSLLEAMRVFDGRVYGVTHGLLMGFRIRVWR 597

Query: 246 --REIFDELSKLGKDMKVSTLNAMLE 269
               +F+EL+ LG +  V+  NA+ +
Sbjct: 598 DAETLFNELTTLGHNTAVAFYNALTD 623



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 88/194 (45%), Gaps = 13/194 (6%)

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF------KSLMHSKEKPTLPT 193
           M ++L ++ ++   PD + F  ++   G    ++K+ + F      ++L    +K T   
Sbjct: 70  MPALLDQVSAHLLGPDDLPF--IVRELGHSGQWEKVVKSFDWMVLQQNLRSQWDKVT--- 124

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            +++I + G+      A+ +F +     +  +   Y  +I  YG    +++A EIF+ + 
Sbjct: 125 -STIISSLGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIFEAMK 183

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
            + K   V   NA+++A    G    A  +F      G++PD  T+  L  A  +AN  E
Sbjct: 184 VVCKPNLV-VYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWE 242

Query: 314 LVQKLLKRMEQNGI 327
              ++   ME+ GI
Sbjct: 243 ECDRIFAEMEERGI 256



 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 46/202 (22%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQR    +   YS LI    K G  R AM LF +++ +G +PD  +Y+ L+        K
Sbjct: 393 KQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCC----K 448

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILL----RACAQAR------------------ 100
             +  +AL   ++M      +PN++TYN LL    R C   R                  
Sbjct: 449 NGSPDEALALLEEMAD-NGIRPNVITYNSLLDAYGRQCLMVRKNFPKLRFFLLPRVTMLL 507

Query: 101 --NVD----------QVNAL-------FKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
             +VD          Q  AL       F+E+ ++ + P++ T++ +++A      +++  
Sbjct: 508 KPSVDYDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSILNACSHCASVEDAS 567

Query: 142 SVLSRMKSNQCKPDIITFNLLI 163
           S+L  M+    +   +T  LL+
Sbjct: 568 SLLEAMRVFDGRVYGVTHGLLM 589


>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Vitis vinifera]
          Length = 587

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 146/318 (45%), Gaps = 5/318 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+  I  + K G T+ A+ +F  M+   C+P  + Y  LI  +     KA     AL  
Sbjct: 240 VYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLY----GKASKSYMALKV 295

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F +M+  ++CKPNI T+  L+ A A+    ++   +F++L E+ L PD+Y YN +M+AY 
Sbjct: 296 FHEMRS-QKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYS 354

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + G       + S M+   C+PD  ++N+++D+YG+    +  + VF+ +      PT+ 
Sbjct: 355 RAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMK 414

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           +   ++  Y +A    K E +  +M      P       ++ +YG      +  E+   +
Sbjct: 415 SHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAM 474

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            K      +ST N ++  Y   G     + LF +     + PD  T+     AY++    
Sbjct: 475 EKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQY 534

Query: 313 ELVQKLLKRMEQNGIVPN 330
               ++ + M   G  P+
Sbjct: 535 NRCLEVFEEMIDAGCYPD 552



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 139/291 (47%), Gaps = 5/291 (1%)

Query: 40  SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 99
           S   PD   YN LI A+       KA +  L   +      RC P   TY +LL+A   +
Sbjct: 162 SSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEA-----RCVPTEDTYALLLKAYCTS 216

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
             +++  A+F E+ +    P    YN  +D   K G  ++   +  RMK ++C+P   T+
Sbjct: 217 GLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATY 276

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
            +LI+ YGK        +VF  +   K KP + TF +++  + +  L  KAE +F+++  
Sbjct: 277 TMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQE 336

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
               P    Y  ++  Y        A EIF  +  +G +   ++ N M++AY   GL  +
Sbjct: 337 AGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHED 396

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           A  +FE    +G+TP   ++ LL  AY++A      ++++ +M ++GI P+
Sbjct: 397 AQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPD 447



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 131/261 (50%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+++ YN+L+ A  Q     +  + + EL E+   P   TY  ++ AY  +G++++ E+V
Sbjct: 166 PDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAV 225

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
            + M+     P  + +N  ID   K     K  ++F+ +   + +P+  T+  +I  YGK
Sbjct: 226 FAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGK 285

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A     A  VF +M + K  P+  T+  ++  +       +A EIF++L + G +  V  
Sbjct: 286 ASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYA 345

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            NA++EAY   G P  A  +F    +MG  PD ++Y ++  AY +A + E  Q + + M+
Sbjct: 346 YNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMK 405

Query: 324 QNGIVPNKRFFLEALETFSSS 344
           + GI P  +  +  L  +S +
Sbjct: 406 RLGITPTMKSHMLLLSAYSRA 426



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 129/253 (50%), Gaps = 8/253 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+    + G    A  +FS M++ GC PD + YN ++ A+     +A     A
Sbjct: 342 DVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAY----GRAGLHEDA 397

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F+ MK +    P + ++ +LL A ++A  V +   +  ++H+S + PD +  N +++
Sbjct: 398 QAVFEVMKRLG-ITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLN 456

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YG+ G  ++ME VL+ M+      DI T+N+LI+ YG+   F +ME++F+SL      P
Sbjct: 457 LYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIP 516

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ S I  Y + +   +   VF++M      P   T + +++    C N  + +E+ 
Sbjct: 517 DVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSA---CSNGDQIQEVT 573

Query: 250 DELSKLGKDMKVS 262
             +  + KDM+ S
Sbjct: 574 TVIRTMHKDMRTS 586



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 128/262 (48%), Gaps = 6/262 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L+    ++G    A  +F +++ +G  PD   YNAL+ A+     +A     A   F
Sbjct: 311 FTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAY----SRAGFPYGAAEIF 366

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             M+ M  C+P+  +YNI++ A  +A   +   A+F+ +    + P + ++  ++ AY +
Sbjct: 367 SLMQHMG-CEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSR 425

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + + E ++++M  +  KPD    N +++ YG+   F+KME+V  ++        + T
Sbjct: 426 AGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADIST 485

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N +I  YG+A    + E +F+ + A    P  +T+   I  Y      +R  E+F+E+ 
Sbjct: 486 YNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMI 545

Query: 254 KLGKDMKVSTLNAMLEAYCMNG 275
             G      T   +L A C NG
Sbjct: 546 DAGCYPDGGTAKVLLSA-CSNG 566



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 138/316 (43%), Gaps = 5/316 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI   G+K   + A   + E+  + C P    Y  L+ A+      +  L KA
Sbjct: 167 DVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYC----TSGLLEKA 222

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F +M+      P+ V YN  +    +  +  +   +F+ +      P   TY  +++
Sbjct: 223 EAVFAEMRKYG-FPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLIN 281

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK         V   M+S +CKP+I TF  L++++ +    +K E++F+ L  +  +P
Sbjct: 282 LYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEP 341

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  +N+++  Y +A     A  +F  M  M   P   +Y  ++  YG       A+ +F
Sbjct: 342 DVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVF 401

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           + + +LG    + +   +L AY   G   + + +    H  G+ PD+     +   Y + 
Sbjct: 402 EVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRL 461

Query: 310 NMKELVQKLLKRMEQN 325
              E ++++L  ME+ 
Sbjct: 462 GQFEKMEEVLTAMEKG 477



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 66/161 (40%)

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           L  S   P +  +N +I  YG+  L  KAE  + ++   +  P+  TY  ++  Y     
Sbjct: 159 LYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGL 218

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           + +A  +F E+ K G        NA ++     G   +A  +FE        P ++TY +
Sbjct: 219 LEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTM 278

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           L   Y KA+   +  K+   M      PN   F   +  F+
Sbjct: 279 LINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFA 319


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 162/339 (47%), Gaps = 22/339 (6%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKA 65
           +ADT IY+ L++ + K+ +   A+ +  EMR+ GC P+   YN+LI         D+A+ 
Sbjct: 76  VADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQE 135

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL-------HESILA 118
           L      F+ MK +E C P++VTYN LL    +   +++  ALF+E+        +   +
Sbjct: 136 L------FEHMKSVE-CSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCS 188

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           P++ TY+ ++D   K   + +   +L  MK+  C PD+IT+ +L+D   K        +V
Sbjct: 189 PNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEV 248

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
            + ++ +   P L T+NS++    +AR    A  + + MT    TP+ +TY  +I   G 
Sbjct: 249 LREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLID--GL 306

Query: 239 CDNVSRAREIFDELSKL---GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           C  V R ++    L+ +   G    +   N ++   C      E+  L   + + G+ PD
Sbjct: 307 C-KVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPD 365

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
             TY  +     ++N  +   +LL  ++  G  P+   +
Sbjct: 366 VVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILY 404



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 163/368 (44%), Gaps = 41/368 (11%)

Query: 2   QKQRWY--------IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI 53
           Q QR +        + +  + S LI  + K  ++  A+  F  M+ SG   D  +Y AL+
Sbjct: 27  QAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAMQGSGIVADTVIYTALL 86

Query: 54  TAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH 113
           +       K K L +AL    +M+    C+PN+VTYN L+    +    D+   LF+ + 
Sbjct: 87  SGLW----KEKRLDQALAILHEMRD-HGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMK 141

Query: 114 ESILAPDIYTYNGVMDAYGKNG-------MIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
               +P + TYN ++D   + G       + +EM    S    ++C P++IT+++LID  
Sbjct: 142 SVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGL 201

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
            K     +  ++ +S+      P + T+  ++    K      A  V ++M      P+ 
Sbjct: 202 CKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNL 261

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDM-------KVSTLNAMLEAYCMNGLPTE 279
           +TY  +  ++G C    RAR + D L+ L +DM        V T   +++  C  G   +
Sbjct: 262 VTYNSL--LHGLC----RARRVSDALA-LMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKD 314

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
           A  +  +  + G TPD   Y +L     KA+  +    LL+R    GI P+       + 
Sbjct: 315 ACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPD-------VV 367

Query: 340 TFSSSLAG 347
           T+SS + G
Sbjct: 368 TYSSVIYG 375



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/384 (23%), Positives = 153/384 (39%), Gaps = 49/384 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K R    D   Y+ L+  + K+ +   A  +  EM ++GC P+   YN+L    LH   +
Sbjct: 218 KARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSL----LHGLCR 273

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTY--------------------------------- 89
           A+ ++ AL   + M     C PN+VTY                                 
Sbjct: 274 ARRVSDALALMRDMT-CRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLM 332

Query: 90  --NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
             N+L+    +A  VD+  AL +      + PD+ TY+ V+    ++  + E   +L  +
Sbjct: 333 IYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYV 392

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           KS  C PD+I ++ LID   K    D+   +++ +        + T++++I    KA   
Sbjct: 393 KSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRV 452

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLN 265
            +A  +  +M  M   PS +TY  +I   G CD  ++  A E+ +E+ +        T N
Sbjct: 453 DEAHLLLARMVRMGTPPSTMTYNSLIK--GLCDLNHLDEAIELVEEMERSNCAPSAVTYN 510

Query: 266 AMLEAYCMNGLPTEADLLFENSHNM-----GVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
            ++   C       A +L E +        G   D+  Y  L     KA          +
Sbjct: 511 ILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQ 570

Query: 321 RMEQNGIVPNKRFFLEALETFSSS 344
            M  NG++P+   +   LE    S
Sbjct: 571 EMIDNGVIPDHITYSILLEGLKKS 594



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 130/297 (43%), Gaps = 14/297 (4%)

Query: 42  CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQAR 100
           C+PD   Y AL+        +   + +A   F +M+  +   PN+   +IL+   C   R
Sbjct: 5   CQPDVYTYAALLRGFC----RGGEIDQAQRCFDEMRS-KNLVPNVFLCSILIDGLCKAKR 59

Query: 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
           ++D +   F+ +  S +  D   Y  ++    K   + +  ++L  M+ + C+P+++T+N
Sbjct: 60  SIDALRC-FRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYN 118

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
            LID   K    D+ +++F+ +   +  P++ T+N+++    +     +A  +FQ+M   
Sbjct: 119 SLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDR 178

Query: 221 -------KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
                  + +P+ ITY  +I      + VS+A E+ + +   G    V T   +++  C 
Sbjct: 179 RSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCK 238

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                 A  +     + G  P+  TY  L     +A        L++ M   G  PN
Sbjct: 239 ESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPN 295



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 117/275 (42%), Gaps = 51/275 (18%)

Query: 116 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-RQAFDK 174
           I  PD+YTY  ++  + + G I + +     M+S    P++   ++LID   K +++ D 
Sbjct: 4   ICQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDA 63

Query: 175 MEQVFKSLMHS-----------------KEK------------------PTLPTFNSMII 199
           + + F+++  S                 KEK                  P + T+NS+I 
Sbjct: 64  L-RCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLID 122

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE-LSKLGKD 258
              K     +A+ +F+ M +++ +PS +TY  ++        + RA  +F E L +   D
Sbjct: 123 GLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHD 182

Query: 259 MK------VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           M       V T + +++  C     ++A  L E+    G +PD  TY +L     K +  
Sbjct: 183 MDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKV 242

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
               ++L+ M   G VPN       L T++S L G
Sbjct: 243 AAAWEVLREMLDAGCVPN-------LVTYNSLLHG 270


>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 485

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 154/322 (47%), Gaps = 12/322 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  IY+ +I    K G    A+ LF  M   G R D   YN+L+T    +  ++ A    
Sbjct: 173 DVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDA---- 228

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                +   M    PN++T+  L+ A  +     +    ++E+    + PD++TYN ++ 
Sbjct: 229 -ARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIH 287

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
               +G + E + +L  M +  C PD++T+N LI+ + K +  D+  ++ + +       
Sbjct: 288 GLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVV 347

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRARE 247
              TFN++I  Y +A     A+ +F +M +    P+  TY   I +YG C N  V +A  
Sbjct: 348 DTVTFNTIIQGYFQAGRPDAAQEIFSRMGS---RPNIRTYS--ILLYGLCYNWRVEKALV 402

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F+ + K   ++ ++T N ++   CM G   +A  LF +    G+ PD  TY  +   + 
Sbjct: 403 LFESMQKSEMELDITTYNIVIHGMCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGFC 462

Query: 308 KANMKELVQKLLKRMEQNGIVP 329
           +  + +    L ++M+++G++P
Sbjct: 463 RKRLWDKADFLYRKMQEDGLLP 484



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 136/308 (44%), Gaps = 11/308 (3%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK--PNIV 87
           A+ LF  M  S  RP PS+     +  L    K+K     +  F  M   E C    ++ 
Sbjct: 53  AIDLFCNMIQS--RPLPSIVE--FSKLLSNIAKSKNYDLVISLFHNM---EICGIGHDLY 105

Query: 88  TYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 146
           TYNI++   C  +R V  ++ + K +      PD+ T + +++ + +   +     ++S+
Sbjct: 106 TYNIVINCLCRCSRFVIALSVVGKMMKFG-YEPDVVTVSSLINGFCQGNRVFGAVDLVSK 164

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           M+  +CK D++ +N +ID + K    +    +F  +     +    T+NS++     +  
Sbjct: 165 MEEMRCKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGR 224

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
           +  A  + + M      P+ IT+  +I  +        A++ ++E+ +   D  V T N+
Sbjct: 225 RSDAARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNS 284

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           M+   CM+G   EA  + +     G  PD  TY  L   + K    +   KL++ M Q G
Sbjct: 285 MIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRG 344

Query: 327 IVPNKRFF 334
           +V +   F
Sbjct: 345 LVVDTVTF 352



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 133/321 (41%), Gaps = 12/321 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +SKL++ + K     L + LF  M   G   D   YN +I           AL+  +G  
Sbjct: 72  FSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNIVINCLCRCSRFVIALS-VVGKM 130

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K  G E   P++VT + L+    Q   V     L  ++ E     D+  YN ++D + K
Sbjct: 131 MKF-GYE---PDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRCKLDVVIYNTIIDGFCK 186

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G++     +  RM+ +  + D +T+N L+             ++ + ++     P + T
Sbjct: 187 TGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVIT 246

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDE 251
           F ++I  + +     +A+  +++M      P   TY  +I  +G C    V  A++I D 
Sbjct: 247 FTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMI--HGLCMHGQVDEAKQILDL 304

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G    V T N ++  +C      E   L       G+  D+ T+  + + Y +A  
Sbjct: 305 MVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGR 364

Query: 312 KELVQKLLKRMEQNGIVPNKR 332
            +  Q++  RM   G  PN R
Sbjct: 365 PDAAQEIFSRM---GSRPNIR 382



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 79/188 (42%)

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P I+ F+ L+ +  K + +D +  +F ++        L T+N +I    +      A  V
Sbjct: 67  PSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNIVINCLCRCSRFVIALSV 126

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
             KM    Y P  +T   +I  +   + V  A ++  ++ ++   + V   N +++ +C 
Sbjct: 127 VGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRCKLDVVIYNTIIDGFCK 186

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
            GL   A +LF      GV  D+ TY  L      +  +    +L++ M    IVPN   
Sbjct: 187 TGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVIT 246

Query: 334 FLEALETF 341
           F   +  F
Sbjct: 247 FTALINAF 254



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 100/233 (42%), Gaps = 6/233 (2%)

Query: 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
           N+D+   LF  + +S   P I  ++ ++    K+     + S+   M+      D+ T+N
Sbjct: 49  NLDEAIDLFCNMIQSRPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYN 108

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA-RLQGKAEYVFQKMTA 219
           ++I+   +   F     V   +M    +P + T +S+I  + +  R+ G  + V  KM  
Sbjct: 109 IVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLV-SKMEE 167

Query: 220 MKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
           M+     + Y  II   G+C    V+ A  +F  + + G      T N+++   C +G  
Sbjct: 168 MRCKLDVVIYNTIID--GFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRR 225

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           ++A  L  +     + P+  T+  L  A+ +       +K  + M +  I P+
Sbjct: 226 SDAARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPD 278


>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
          Length = 625

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 146/318 (45%), Gaps = 5/318 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+  I  + K G T+ A+ +F  M+   C+P  + Y  LI  +     KA     AL  
Sbjct: 278 VYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLY----GKASKSYMALKV 333

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F +M+  ++CKPNI T+  L+ A A+    ++   +F++L E+ L PD+Y YN +M+AY 
Sbjct: 334 FHEMRS-QKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYS 392

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + G       + S M+   C+PD  ++N+++D+YG+    +  + VF+ +      PT+ 
Sbjct: 393 RAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMK 452

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           +   ++  Y +A    K E +  +M      P       ++ +YG      +  E+   +
Sbjct: 453 SHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAM 512

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            K      +ST N ++  Y   G     + LF +     + PD  T+     AY++    
Sbjct: 513 EKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQY 572

Query: 313 ELVQKLLKRMEQNGIVPN 330
               ++ + M   G  P+
Sbjct: 573 NRCLEVFEEMIDAGCYPD 590



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 139/291 (47%), Gaps = 5/291 (1%)

Query: 40  SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 99
           S   PD   YN LI A+       KA +  L   +      RC P   TY +LL+A   +
Sbjct: 200 SSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEA-----RCVPTEDTYALLLKAYCTS 254

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
             +++  A+F E+ +    P    YN  +D   K G  ++   +  RMK ++C+P   T+
Sbjct: 255 GLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATY 314

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
            +LI+ YGK        +VF  +   K KP + TF +++  + +  L  KAE +F+++  
Sbjct: 315 TMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQE 374

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
               P    Y  ++  Y        A EIF  +  +G +   ++ N M++AY   GL  +
Sbjct: 375 AGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHED 434

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           A  +FE    +G+TP   ++ LL  AY++A      ++++ +M ++GI P+
Sbjct: 435 AQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPD 485



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 131/261 (50%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+++ YN+L+ A  Q     +  + + EL E+   P   TY  ++ AY  +G++++ E+V
Sbjct: 204 PDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAV 263

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
            + M+     P  + +N  ID   K     K  ++F+ +   + +P+  T+  +I  YGK
Sbjct: 264 FAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGK 323

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A     A  VF +M + K  P+  T+  ++  +       +A EIF++L + G +  V  
Sbjct: 324 ASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYA 383

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            NA++EAY   G P  A  +F    +MG  PD ++Y ++  AY +A + E  Q + + M+
Sbjct: 384 YNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMK 443

Query: 324 QNGIVPNKRFFLEALETFSSS 344
           + GI P  +  +  L  +S +
Sbjct: 444 RLGITPTMKSHMLLLSAYSRA 464



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 129/253 (50%), Gaps = 8/253 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+    + G    A  +FS M++ GC PD + YN ++ A+     +A     A
Sbjct: 380 DVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAY----GRAGLHEDA 435

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F+ MK +    P + ++ +LL A ++A  V +   +  ++H+S + PD +  N +++
Sbjct: 436 QAVFEVMKRLG-ITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLN 494

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YG+ G  ++ME VL+ M+      DI T+N+LI+ YG+   F +ME++F+SL      P
Sbjct: 495 LYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIP 554

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ S I  Y + +   +   VF++M      P   T + +++    C N  + +E+ 
Sbjct: 555 DVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSA---CSNGDQIQEVT 611

Query: 250 DELSKLGKDMKVS 262
             +  + KDM+ S
Sbjct: 612 TVIRTMHKDMRTS 624



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 128/262 (48%), Gaps = 6/262 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L+    ++G    A  +F +++ +G  PD   YNAL+ A+     +A     A   F
Sbjct: 349 FTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAY----SRAGFPYGAAEIF 404

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             M+ M  C+P+  +YNI++ A  +A   +   A+F+ +    + P + ++  ++ AY +
Sbjct: 405 SLMQHMG-CEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSR 463

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + + E ++++M  +  KPD    N +++ YG+   F+KME+V  ++        + T
Sbjct: 464 AGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADIST 523

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N +I  YG+A    + E +F+ + A    P  +T+   I  Y      +R  E+F+E+ 
Sbjct: 524 YNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMI 583

Query: 254 KLGKDMKVSTLNAMLEAYCMNG 275
             G      T   +L A C NG
Sbjct: 584 DAGCYPDGGTAKVLLSA-CSNG 604



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 138/316 (43%), Gaps = 5/316 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI   G+K   + A   + E+  + C P    Y  L+ A+      +  L KA
Sbjct: 205 DVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYC----TSGLLEKA 260

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F +M+      P+ V YN  +    +  +  +   +F+ +      P   TY  +++
Sbjct: 261 EAVFAEMRKYG-FPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLIN 319

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK         V   M+S +CKP+I TF  L++++ +    +K E++F+ L  +  +P
Sbjct: 320 LYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEP 379

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  +N+++  Y +A     A  +F  M  M   P   +Y  ++  YG       A+ +F
Sbjct: 380 DVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVF 439

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           + + +LG    + +   +L AY   G   + + +    H  G+ PD+     +   Y + 
Sbjct: 440 EVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRL 499

Query: 310 NMKELVQKLLKRMEQN 325
              E ++++L  ME+ 
Sbjct: 500 GQFEKMEEVLTAMEKG 515



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 66/161 (40%)

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           L  S   P +  +N +I  YG+  L  KAE  + ++   +  P+  TY  ++  Y     
Sbjct: 197 LYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGL 256

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           + +A  +F E+ K G        NA ++     G   +A  +FE        P ++TY +
Sbjct: 257 LEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTM 316

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           L   Y KA+   +  K+   M      PN   F   +  F+
Sbjct: 317 LINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFA 357


>gi|357509703|ref|XP_003625140.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500155|gb|AES81358.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 855

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 157/334 (47%), Gaps = 11/334 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+ Q+ Y A T IY+ +I +  +  +T  A  LF EM+   C+PD   YNALI AH    
Sbjct: 140 MKNQKNYCARTDIYNMMIRLHARHNRTDQARGLFFEMQKCRCKPDAETYNALINAH---- 195

Query: 61  DKAKALAKALGYFQKMKGMERCK--PNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
            +A     A+     M  M R    P+  TYN L+ AC  + N  +   + K++ ++ + 
Sbjct: 196 GRAGQWRWAMNI---MDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTDNGVG 252

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD+ T+N ++ A+       +  S    +K    +PD  T N++I    K + +DK   +
Sbjct: 253 PDLVTHNIMLTAFKSGTQYSKALSYFELIKGTHIRPDTTTHNIIIHCLVKLKQYDKAVDI 312

Query: 179 FKSLMHSKEK--PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           F S+   K +  P + TF SMI  Y         E  F  M A    P+ ++Y  ++  Y
Sbjct: 313 FNSMKEKKSECHPDVVTFTSMIHLYSVCGHIENCEAAFNMMLAEGLKPNIVSYNALLGAY 372

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                 + A ++F+E+ + G    V +  ++L AY  +  P +A  +F+      + P+ 
Sbjct: 373 AARGMENEALQVFNEIKQNGFRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNI 432

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +Y  L  AY    + E   ++L+ MEQ+ I PN
Sbjct: 433 VSYNALIDAYGSNGLLEDAIEILREMEQDKIHPN 466



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 149/321 (46%), Gaps = 16/321 (4%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSG---CRPDPSVYNALITAHL-HTR-DKAKALAKALG 71
           LI  + ++G       +FS M+N      R D  +YN +I  H  H R D+A+ L     
Sbjct: 120 LIRELTQRGSIEHCNLVFSWMKNQKNYCARTD--IYNMMIRLHARHNRTDQARGL----- 172

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           +F+  K   RCKP+  TYN L+ A  +A        +  ++  + + P   TYN +++A 
Sbjct: 173 FFEMQKC--RCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINAC 230

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           G +G  KE  +V  +M  N   PD++T N+++ ++     + K    F+ +  +  +P  
Sbjct: 231 GSSGNWKEALNVCKKMTDNGVGPDLVTHNIMLTAFKSGTQYSKALSYFELIKGTHIRPDT 290

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYT--PSFITYECIITMYGYCDNVSRAREIF 249
            T N +I    K +   KA  +F  M   K    P  +T+  +I +Y  C ++      F
Sbjct: 291 TTHNIIIHCLVKLKQYDKAVDIFNSMKEKKSECHPDVVTFTSMIHLYSVCGHIENCEAAF 350

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           + +   G    + + NA+L AY   G+  EA  +F      G  PD  +Y  L  AY ++
Sbjct: 351 NMMLAEGLKPNIVSYNALLGAYAARGMENEALQVFNEIKQNGFRPDVVSYTSLLNAYGRS 410

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +  +++ K +++N + PN
Sbjct: 411 RKPQKAREIFKMIKRNNLKPN 431



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 140/295 (47%), Gaps = 7/295 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI   G  G  + A+ +  +M ++G  PD   +N ++TA           +KAL YF
Sbjct: 223 YNNLINACGSSGNWKEALNVCKKMTDNGVGPDLVTHNIMLTAF----KSGTQYSKALSYF 278

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE--SILAPDIYTYNGVMDAY 131
           + +KG    +P+  T+NI++    + +  D+   +F  + E  S   PD+ T+  ++  Y
Sbjct: 279 ELIKGTH-IRPDTTTHNIIIHCLVKLKQYDKAVDIFNSMKEKKSECHPDVVTFTSMIHLY 337

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
              G I+  E+  + M +   KP+I+++N L+ +Y  R   ++  QVF  +  +  +P +
Sbjct: 338 SVCGHIENCEAAFNMMLAEGLKPNIVSYNALLGAYAARGMENEALQVFNEIKQNGFRPDV 397

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            ++ S++  YG++R   KA  +F+ +      P+ ++Y  +I  YG    +  A EI  E
Sbjct: 398 VSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILRE 457

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           + +      V ++  +L A    G   + D +   +   G+  ++  Y     +Y
Sbjct: 458 MEQDKIHPNVVSICTLLAACGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSY 512



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 130/280 (46%), Gaps = 5/280 (1%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME-RCKPNIVT 88
           A+  F  ++ +  RPD + +N +I    H   K K   KA+  F  MK  +  C P++VT
Sbjct: 274 ALSYFELIKGTHIRPDTTTHNIII----HCLVKLKQYDKAVDIFNSMKEKKSECHPDVVT 329

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           +  ++   +   +++   A F  +    L P+I +YN ++ AY   GM  E   V + +K
Sbjct: 330 FTSMIHLYSVCGHIENCEAAFNMMLAEGLKPNIVSYNALLGAYAARGMENEALQVFNEIK 389

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
            N  +PD++++  L+++YG+ +   K  ++FK +  +  KP + ++N++I  YG   L  
Sbjct: 390 QNGFRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGLLE 449

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A  + ++M   K  P+ ++   ++   G C    +   +       G  +     N+ +
Sbjct: 450 DAIEILREMEQDKIHPNVVSICTLLAACGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAI 509

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            +Y   G   +A  L+ +     +  DS TY +L     K
Sbjct: 510 GSYINVGEYDKAIDLYNSMRKKKIKSDSVTYTVLISGCCK 549



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 153/359 (42%), Gaps = 46/359 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRN--SGCRPDPSVYNALITAHLHTRDKAKALA 67
           DT  ++ +I  + K  Q   A+ +F+ M+   S C PD   + ++I  HL++      + 
Sbjct: 289 DTTTHNIIIHCLVKLKQYDKAVDIFNSMKEKKSECHPDVVTFTSMI--HLYS--VCGHIE 344

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
                F  M   E  KPNIV+YN LL A A     ++   +F E+ ++   PD+ +Y  +
Sbjct: 345 NCEAAFNMMLA-EGLKPNIVSYNALLGAYAARGMENEALQVFNEIKQNGFRPDVVSYTSL 403

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++AYG++   ++   +   +K N  KP+I+++N LID+YG     +   ++ + +   K 
Sbjct: 404 LNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKI 463

Query: 188 KPTLPTFNSMIINYGK-------------ARLQG----------------------KAEY 212
            P + +  +++   G+             A ++G                      KA  
Sbjct: 464 HPNVVSICTLLAACGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGEYDKAID 523

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           ++  M   K     +TY  +I+          A    +E+  L   M     ++++ AY 
Sbjct: 524 LYNSMRKKKIKSDSVTYTVLISGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSSIICAYS 583

Query: 273 MN----GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
                 G   EA+  F    ++G +PD  TY  +  AY  A   E +  L + ME+N +
Sbjct: 584 KQASALGQIIEAESTFNLMKSLGCSPDVVTYTAMLDAYNAAEKWEKLYALFEEMEENDV 642



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 94/205 (45%), Gaps = 9/205 (4%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           L+A  G+ GQ      + S     G + +   YN+ I ++++  +      KA+  +  M
Sbjct: 473 LLAACGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGE----YDKAIDLYNSM 528

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN-- 134
           +  ++ K + VTY +L+  C +     +  +  +E+    L      Y+ ++ AY K   
Sbjct: 529 RK-KKIKSDSVTYTVLISGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSSIICAYSKQAS 587

Query: 135 --GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
             G I E ES  + MKS  C PD++T+  ++D+Y   + ++K+  +F+ +  +  K    
Sbjct: 588 ALGQIIEAESTFNLMKSLGCSPDVVTYTAMLDAYNAAEKWEKLYALFEEMEENDVKLDTI 647

Query: 193 TFNSMIINYGKARLQGKAEYVFQKM 217
              +++  + K    G+   + Q M
Sbjct: 648 ACAALMRAFNKGGQPGRVLSLAQSM 672


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 152/324 (46%), Gaps = 12/324 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G T  A+ L   M    C+PD  VY ++I +      K + + +A   F
Sbjct: 177 YGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLC----KDRQVTEAFNLF 232

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM G +   P+I TY  L+ +         V  L  ++  S + PD+  ++ V+DA  K
Sbjct: 233 SKMVG-QGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCK 291

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G I E   V+  M     +P+++T+N L+D +  +   D+  +VF +++H+   P + +
Sbjct: 292 EGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVIS 351

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE---IFD 250
           +N++I  Y K +   KA Y+F++M   +  P+ +TY    T+   C +V R ++   +F 
Sbjct: 352 YNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYN---TLMHXC-HVGRLQDAIALFH 407

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+   G+   ++T   +L+  C      EA  L +      + PD   Y ++     +A 
Sbjct: 408 EMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAG 467

Query: 311 MKELVQKLLKRMEQNGIVPNKRFF 334
             E  + +   +   G+ PN R +
Sbjct: 468 ELEAARDIFSNLSSKGLRPNVRTY 491



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 132/304 (43%), Gaps = 10/304 (3%)

Query: 29  LAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88
            A  + +++   G +PD + +  LI   L    K   +  AL  F KM G E  +PN+VT
Sbjct: 122 FAFSVLAKILKLGHQPDTATFTTLIRG-LCVEGK---IGDALHLFDKMIG-EGFQPNVVT 176

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y  L+    +  N +    L + + +    PD+  Y  ++D+  K+  + E  ++ S+M 
Sbjct: 177 YGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMV 236

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
                PDI T+  LI S      +  +  +   +++SK  P +  F++++    K     
Sbjct: 237 GQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKIT 296

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNA 266
           +A  V   M      P+ +TY  +  M G+C    +  A ++FD +   G    V + N 
Sbjct: 297 EAHDVVDMMIIRGVEPNVVTYNAL--MDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNT 354

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           ++  YC      +A  LFE      + P++ TY  L        +++ +  L   M  +G
Sbjct: 355 LINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHVGRLQDAI-ALFHEMVAHG 413

Query: 327 IVPN 330
            +P+
Sbjct: 414 QIPD 417



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 104/228 (45%), Gaps = 8/228 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    K  +   A +LF EM      P+   YN L    +H     + L  A+  F
Sbjct: 352 YNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTL----MHXCHVGR-LQDAIALF 406

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M    +  P++ TY ILL    +  ++D+  AL K +  S + PDI  Y  V+D   +
Sbjct: 407 HEMVAHGQI-PDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCR 465

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++    + S + S   +P++ T+ ++I+   +R   D+  ++F  +  +   P   T
Sbjct: 466 AGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCT 525

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           +N++     + +   +A  + Q+M A  ++    T   ++ M   CD+
Sbjct: 526 YNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEM--LCDD 571



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 67/356 (18%), Positives = 134/356 (37%), Gaps = 72/356 (20%)

Query: 46  PSVYNALITAHLHTRD-KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQ 104
           P  +++L     H++      L  AL  F +M  M    P+ V +N LL + A+ +    
Sbjct: 29  PPYFSSLSHNRFHSKSLNFNTLDDALSSFNRMLHMHP-PPSTVDFNRLLTSIAKTKQYPT 87

Query: 105 VNALFKELHESILAPDIYTYNGVMDAYGK------------------------------- 133
           V +L  ++    + PD+YT N +++++                                 
Sbjct: 88  VFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIR 147

Query: 134 ----NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
                G I +   +  +M     +P+++T+  LI+   K    +   ++ +S+     +P
Sbjct: 148 GLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQP 207

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII-TMYGYCD-------- 240
            +  + S+I +  K R   +A  +F KM     +P   TY  +I ++   C+        
Sbjct: 208 DVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLL 267

Query: 241 --------------------------NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
                                      ++ A ++ D +   G +  V T NA+++ +C+ 
Sbjct: 268 NQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQ 327

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
               EA  +F+   + G  P+  +Y  L   Y K    +    L + M Q  ++PN
Sbjct: 328 SEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPN 383



 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 5/137 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  IY+ +I  M + G+   A  +FS + + G RP+   Y  +I        +   L +A
Sbjct: 452 DIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLC----RRGLLDEA 507

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F +M G   C P+  TYN + +   Q +   +   L +E+     + D+ T   +++
Sbjct: 508 NKLFMEMDG-NGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVE 566

Query: 130 AYGKNGMIKEMESVLSR 146
               + + + ++ +LS 
Sbjct: 567 MLCDDKLDQSVKQILSE 583


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 157/325 (48%), Gaps = 5/325 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +++ LI    K+ +   AM +FS+MR  G  P+   Y A+I        K+ ++  A
Sbjct: 370 DHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILC----KSGSVDDA 425

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           + YF++M   E   PNI+ Y  L+ +       D+   L  E+ +  +  +   +N ++ 
Sbjct: 426 MLYFEQMID-EGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIH 484

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           ++ K G + E E +   M     KP++IT++ LID Y      D+  ++  S+     KP
Sbjct: 485 SHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKP 544

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T+N++I  Y +      A  +F++M +   +P+ ITY  I+    +    + A+E++
Sbjct: 545 DCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELY 604

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             ++K G  +++ST N +L   C N L  EA  +F+N     +  ++ T+ ++  A  K 
Sbjct: 605 VGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKV 664

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
              +  + L   +  NG+VP+ R +
Sbjct: 665 GRNDEAKDLFAALSANGLVPDVRTY 689



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 151/322 (46%), Gaps = 7/322 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS +IA + K      AM + + M  +G  P+   YN++    LH    ++   +A
Sbjct: 230 DVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSI----LHGYCSSEQPKEA 285

Query: 70  LGYFQKMKGMERCKPNIVTYNILLR-ACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           +G+ +KM+  +  +P++VTYN L+   C   R+  +   +F  + +  L PDI TY  ++
Sbjct: 286 IGFLKKMRS-DGVEPDVVTYNSLMDYLCKNGRST-EARKIFDSMTKRGLEPDIATYCTLL 343

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
             Y   G + EM ++L  M  N   PD   FN+LI +Y K++  D+   VF  +      
Sbjct: 344 QGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLN 403

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P + T+ ++I    K+     A   F++M     TP+ I Y  +I      D   +A E+
Sbjct: 404 PNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEEL 463

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             E+   G  +     N+++ ++C  G   E++ LF+    +GV P+  TY  L   Y  
Sbjct: 464 ILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCL 523

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
           A   +   KLL  M   G+ P+
Sbjct: 524 AGKMDEATKLLSSMFSVGMKPD 545



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 139/320 (43%), Gaps = 7/320 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI    + G+  L       +   G R +   +  L+      +  + A+   L   
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 74  QKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNAL--FKELHESILAPDIYTYNGVMDA 130
            ++     C P++ +  ILL+  C + R+ + +  L    +      APD+ +Y  V++ 
Sbjct: 150 TELS----CMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVING 205

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K G   +  S    M   +  PD++T++ +I +  K QA DK  +V  +++ +   P 
Sbjct: 206 FFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPN 265

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             T+NS++  Y  +    +A    +KM +    P  +TY  ++         + AR+IFD
Sbjct: 266 CMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFD 325

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            ++K G +  ++T   +L+ Y   G   E   L +     G+ PD   + +L  AY K  
Sbjct: 326 SMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQE 385

Query: 311 MKELVQKLLKRMEQNGIVPN 330
             +    +  +M Q+G+ PN
Sbjct: 386 KVDEAMLVFSKMRQHGLNPN 405



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 135/304 (44%), Gaps = 5/304 (1%)

Query: 31  MWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90
           + + ++ R  G  PD   Y  +I       D  KA +    Y + +    R  P++VTY+
Sbjct: 181 LHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYST---YHEMLD--RRISPDVVTYS 235

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
            ++ A  + + +D+   +   + ++ + P+  TYN ++  Y  +   KE    L +M+S+
Sbjct: 236 SIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSD 295

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
             +PD++T+N L+D   K     +  ++F S+     +P + T+ +++  Y       + 
Sbjct: 296 GVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEM 355

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
             +   M      P    +  +I  Y   + V  A  +F ++ + G +  V T  A++  
Sbjct: 356 HALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGI 415

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            C +G   +A L FE   + G+TP+   Y  L  +    +  +  ++L+  M   GI  N
Sbjct: 416 LCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLN 475

Query: 331 KRFF 334
             FF
Sbjct: 476 TIFF 479



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 123/256 (48%), Gaps = 12/256 (4%)

Query: 87  VTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           +T+  LL+  CA  R  D ++ + + + E    PD+++   ++         +E   +L 
Sbjct: 123 ITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLH 182

Query: 146 RMKSNQ---CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
            M  ++     PD++++  +I+ + K    DK    +  ++  +  P + T++S+I    
Sbjct: 183 MMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALC 242

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL---GKDM 259
           K +   KA  V   M      P+ +TY  I  ++GYC +  + +E    L K+   G + 
Sbjct: 243 KGQAMDKAMEVLTTMVKNGVMPNCMTYNSI--LHGYCSS-EQPKEAIGFLKKMRSDGVEP 299

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKL 318
            V T N++++  C NG  TEA  +F++    G+ PD +TY  L + Y TK  + E+   L
Sbjct: 300 DVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEM-HAL 358

Query: 319 LKRMEQNGIVPNKRFF 334
           L  M +NGI P+   F
Sbjct: 359 LDLMVRNGIHPDHHVF 374



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/283 (20%), Positives = 115/283 (40%), Gaps = 6/283 (2%)

Query: 67  AKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           A A+  + +M   G  +  P + TY IL+  C +A  +D   A    + +     +  T+
Sbjct: 66  AAAVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITF 125

Query: 125 NGVMDAYGKNGMIKE-MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
             ++     +    + M+ VL RM    C PD+ +  +L+          +  ++   + 
Sbjct: 126 TPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMA 185

Query: 184 HSK---EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
             +     P + ++ ++I  + K     KA   + +M   + +P  +TY  II       
Sbjct: 186 DDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQ 245

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            + +A E+   + K G      T N++L  YC +  P EA    +   + GV PD  TY 
Sbjct: 246 AMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYN 305

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
            L     K       +K+   M + G+ P+   +   L+ +++
Sbjct: 306 SLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYAT 348



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 13/191 (6%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI      G+   A  L S M + G +PD   YN LI  +     +   +  AL  F
Sbjct: 514 YSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYC----RVSRMDDALALF 569

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M       PNI+TYNI+L+     R       L+  + +S    ++ TYN ++    K
Sbjct: 570 KEMVS-SGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCK 628

Query: 134 NGMIKEMESVLSRMKSNQCKPDII----TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           N +  E      RM  N C  D+     TFN++I +  K    D+ + +F +L  +   P
Sbjct: 629 NNLTDEA----LRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVP 684

Query: 190 TLPTFNSMIIN 200
            + T++ M  N
Sbjct: 685 DVRTYSLMAEN 695



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 84/208 (40%), Gaps = 10/208 (4%)

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY-G 202
           ++R  + +  P + T+ +LI    +    D       +++    +    TF  ++     
Sbjct: 75  MARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCA 134

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV- 261
             R     + V ++MT +   P    + C I + G CD  +R++E  + L  +  D    
Sbjct: 135 DKRTSDAMDIVLRRMTELSCMPD--VFSCTILLKGLCDE-NRSQEALELLHMMADDRGGG 191

Query: 262 STLNAMLEAYCMNGLPTEADL--LFENSHNM---GVTPDSSTYKLLYKAYTKANMKELVQ 316
           S  + +     +NG   E D    +   H M    ++PD  TY  +  A  K    +   
Sbjct: 192 SAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAM 251

Query: 317 KLLKRMEQNGIVPNKRFFLEALETFSSS 344
           ++L  M +NG++PN   +   L  + SS
Sbjct: 252 EVLTTMVKNGVMPNCMTYNSILHGYCSS 279


>gi|356503440|ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Glycine max]
          Length = 832

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 154/334 (46%), Gaps = 11/334 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           ++ Q+ Y A   IY+ +I +  +  +T  A  LF EM+   C+PD   YNA+I AH    
Sbjct: 141 LKNQKNYRARNDIYNMMIRLHARHNRTDQARGLFFEMQEWRCKPDVETYNAIINAH---- 196

Query: 61  DKAKALAKALGYFQKMKGMERCK--PNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
            +A     A+     M  M R    P+  TYN L+ AC  + N  +   + K++ E+ + 
Sbjct: 197 GRAGQWRWAMNI---MDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVG 253

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD+ T+N ++ A+       +  S    MK    +PD  T N++I    K + +DK  ++
Sbjct: 254 PDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIEI 313

Query: 179 FKSLMHSKEK--PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           F S+   K +  P + TF S+I  Y         E  F  M A    P+ ++Y  +I  Y
Sbjct: 314 FNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIVSYNALIGAY 373

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                 + A   F+E+ + G    + +  ++L AY  +  P +A  +F+      + P+ 
Sbjct: 374 AARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNL 433

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +Y  L  AY    +     K+L+ MEQ GI PN
Sbjct: 434 VSYNALIDAYGSNGLLADAIKILREMEQEGIQPN 467



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 145/318 (45%), Gaps = 10/318 (3%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNS-GCRPDPSVYNALITAHL-HTRDKAKALAKALGYFQ 74
           LI  + ++G       +F  ++N    R    +YN +I  H  H R       +A G F 
Sbjct: 121 LIKELTQRGSIEHCNRVFRWLKNQKNYRARNDIYNMMIRLHARHNRTD-----QARGLFF 175

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M+   RCKP++ TYN ++ A  +A        +  ++  + + P   TYN +++A G +
Sbjct: 176 EMQEW-RCKPDVETYNAIINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSS 234

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G  KE  +V  +M  N   PD++T N+++ ++     + K    F+ +  +  +P   T 
Sbjct: 235 GNWKEALNVCKKMTENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTL 294

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKY--TPSFITYECIITMYGYCDNVSRAREIFDEL 252
           N +I    K R   KA  +F  M   K   TP  +T+  II +Y  C  V      F+ +
Sbjct: 295 NIVIHCLVKLRQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMM 354

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G    + + NA++ AY   G+  EA L F      G  PD  +Y  L  AY ++   
Sbjct: 355 IAEGLKPNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKP 414

Query: 313 ELVQKLLKRMEQNGIVPN 330
              +++  RM++N + PN
Sbjct: 415 HKARQIFDRMKRNKLKPN 432



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 136/301 (45%), Gaps = 7/301 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ +++      Q   A+  F  M+ +  RPD +  N +I    H   K +   KA
Sbjct: 255 DLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVI----HCLVKLRQYDKA 310

Query: 70  LGYFQKMKGME-RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           +  F  M+  +  C P++VT+  ++   +    V+   A F  +    L P+I +YN ++
Sbjct: 311 IEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIVSYNALI 370

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            AY   GM  E     + +K N  +PDI+++  L+++YG+ Q   K  Q+F  +  +K K
Sbjct: 371 GAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLK 430

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P L ++N++I  YG   L   A  + ++M      P+ ++   ++   G C    +   +
Sbjct: 431 PNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQPNVVSICTLLAACGRCSRKVKIDTV 490

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMN-GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
                  G  +     NA + + CMN G   +A  L+++     +  DS TY +L     
Sbjct: 491 LTAAEMRGIKLNTVAYNAAIGS-CMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVLISGCC 549

Query: 308 K 308
           K
Sbjct: 550 K 550



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 140/319 (43%), Gaps = 7/319 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA-K 68
           D   ++ +I +    GQ       F+ M   G +P+   YNALI A+      A+ +  +
Sbjct: 327 DVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIVSYNALIGAY-----AARGMDNE 381

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A  +F ++K     +P+IV+Y  LL A  +++   +   +F  +  + L P++ +YN ++
Sbjct: 382 AHLFFNEIK-QNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNALI 440

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           DAYG NG++ +   +L  M+    +P++++   L+ + G+     K++ V  +      K
Sbjct: 441 DAYGSNGLLADAIKILREMEQEGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIK 500

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
                +N+ I +        KA  +++ M   K     +TY  +I+          A   
Sbjct: 501 LNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVLISGCCKMSKYGEALSF 560

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            +E+  L   +     ++ + AY   G   EA+  F    + G  PD  TY  +  AY  
Sbjct: 561 MEEIMHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAYNA 620

Query: 309 ANMKELVQKLLKRMEQNGI 327
           A   E    L + ME + I
Sbjct: 621 AENWEKAYALFEEMEASSI 639



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 140/322 (43%), Gaps = 14/322 (4%)

Query: 35  SEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLR 94
           +EMR  G + +   YNA I + ++  +      KA+G ++ M+  ++ K + VTY +L+ 
Sbjct: 494 AEMR--GIKLNTVAYNAAIGSCMNVGE----YDKAIGLYKSMRK-KKIKTDSVTYTVLIS 546

Query: 95  ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
            C +     +  +  +E+    L      Y+  + AY K G I E ES  + MKS+ C P
Sbjct: 547 GCCKMSKYGEALSFMEEIMHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSGCYP 606

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           D++T+  ++D+Y   + ++K   +F+ +  S  K       +++ ++ K    G+   V 
Sbjct: 607 DVVTYTAMLDAYNAAENWEKAYALFEEMEASSIKLDTIACAALMRSFNKG---GQPGRVL 663

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV---STLNAMLEAY 271
               +M+      +      M   C  +   R   D +  +   + V     LN  L + 
Sbjct: 664 SLAESMREKEIPFSDTIFFEMVSACSILQDWRTAVDMIKYIEPSLPVISSGCLNQFLHSL 723

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             +G       LF      G   + +TY +L K    +       ++L+ ME  GI P+K
Sbjct: 724 GKSGKIETMLKLFFKMLASGADVNLNTYSILLKNLLSSGNWRKYLEVLQWMEDAGIHPSK 783

Query: 332 RFFLEALETFSSSLAGSQSGSA 353
             + + + +FS    G+++ + 
Sbjct: 784 EMYHD-ISSFSQKCCGNENAAV 804



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 116/275 (42%), Gaps = 5/275 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ  +  D   Y+ L+   G+  +   A  +F  M+ +  +P+   YNALI A+      
Sbjct: 390 KQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNALIDAY----GS 445

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              LA A+   ++M+  E  +PN+V+   LL AC +     +++ +        +  +  
Sbjct: 446 NGLLADAIKILREME-QEGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNTV 504

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            YN  + +    G   +   +   M+  + K D +T+ +LI    K   + +     + +
Sbjct: 505 AYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVLISGCCKMSKYGEALSFMEEI 564

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           MH K   +   ++S I  Y K     +AE  F  M +    P  +TY  ++  Y   +N 
Sbjct: 565 MHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAYNAAENW 624

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
            +A  +F+E+      +      A++ ++   G P
Sbjct: 625 EKAYALFEEMEASSIKLDTIACAALMRSFNKGGQP 659


>gi|356532886|ref|XP_003535000.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Glycine max]
          Length = 485

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 152/354 (42%), Gaps = 41/354 (11%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q +Y      Y KLI ++GK  Q   A  LF+ +   GC     +Y ALI A     
Sbjct: 118 LREQPYYQPREDTYMKLIVLLGKSSQPLRAHELFNSIHEDGCG-STELYTALIAAFCQN- 175

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
                + +AL    +M  +  C+P+I TY+ L++A   +   + V  LF ++ +  + P+
Sbjct: 176 ---NLVDEALSILDEMMNLPSCQPDIFTYSTLIKALVDSLKFEMVELLFDKMAKRSIVPN 232

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
            YT N ++  YGK G   +ME ++S M +   CKPD+ T N +I  +G +   D ME+ +
Sbjct: 233 TYTQNLILSGYGKAGRFDQMEKIVSSMMEGTTCKPDVWTMNTVISVFGDKGQIDIMEKWY 292

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
                   +P   TFN +I  YG  R+  K   V Q M  +K   +  TY  +I  +   
Sbjct: 293 DKFCSFGIQPQRSTFNILIAAYGSKRMYDKMSSVMQCMRRVKCPWTTSTYNNVIEAFAAV 352

Query: 240 DNVSRAREIFDEL-----------------------------------SKLGKDMKVSTL 264
            +       FD++                                    KL   +  S  
Sbjct: 353 GDAENMERAFDQMYAEGLKADTKTFCFLINGYANAGIFHKVISSVSLAEKLQIRVNTSFY 412

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
           NA++ A   +   TE +  F++       PD++TY ++ +AY K  M + +  L
Sbjct: 413 NAIISACAKDDALTEMERFFKHMKEKECHPDNTTYSVMIEAYRKEGMNDKIHYL 466



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 88/220 (40%), Gaps = 50/220 (22%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALA 67
           D    + +I+V G KGQ  +    + +  + G +P  S +N LI A+   R  DK  ++ 
Sbjct: 268 DVWTMNTVISVFGDKGQIDIMEKWYDKFCSFGIQPQRSTFNILIAAYGSKRMYDKMSSV- 326

Query: 68  KALGYFQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT-- 123
                   M+ M R  C     TYN ++ A A   + + +   F +++   L  D  T  
Sbjct: 327 --------MQCMRRVKCPWTTSTYNNVIEAFAAVGDAENMERAFDQMYAEGLKADTKTFC 378

Query: 124 ---------------------------------YNGVMDAYGKNGMIKEMESVLSRMKSN 150
                                            YN ++ A  K+  + EME     MK  
Sbjct: 379 FLINGYANAGIFHKVISSVSLAEKLQIRVNTSFYNAIISACAKDDALTEMERFFKHMKEK 438

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKME--QVFKSLMHSKEK 188
           +C PD  T++++I++Y K    DK+   +  K +M S +K
Sbjct: 439 ECHPDNTTYSVMIEAYRKEGMNDKIHYLEQEKRMMMSDDK 478


>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
 gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
          Length = 821

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 156/316 (49%), Gaps = 5/316 (1%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S +I+  G++G    A   F  +++ G  P    YNAL    L    KA   ++AL   +
Sbjct: 284 STVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNAL----LQVFGKAGIYSEALSIMK 339

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M+    C P+ VTYN L+ A  +A   ++  AL   + E+ + P+  TY  +++AYG+ 
Sbjct: 340 EMED-NNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRA 398

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
             + +  S+  +MK + C P++ T+N ++   GK+   ++M ++   +      P   T+
Sbjct: 399 AQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITW 458

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N+M+   G   +    + VFQ+M +  + P   T+  +IT  G C +   A +I+DE+ +
Sbjct: 459 NTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLE 518

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
            G    V+T NA+L A    G    A+ + ++  N G  P  ++Y L+  +Y K    + 
Sbjct: 519 AGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLILNSYAKGGYVKG 578

Query: 315 VQKLLKRMEQNGIVPN 330
           + ++ K +    I P+
Sbjct: 579 INRIEKDIYDGHIFPS 594



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 140/320 (43%), Gaps = 9/320 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ ++++ G KG  +    +F EM++ G  PD   +N LITA      +  +   A   +
Sbjct: 458 WNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITAS----GRCGSDIDAEKIY 513

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M   G     P++ TYN LL A A+  +     ++ K++      P   +Y+ ++++Y
Sbjct: 514 DEMLEAGF---TPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLILNSY 570

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G +K +  +   +      P  +    LI +  K +A   ME+ F++L     KP L
Sbjct: 571 AKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCRALAGMERAFQALQKHGYKPDL 630

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             FNSM+  + +  +  +A  +   +      P  +TY  ++ +Y       +A EI  E
Sbjct: 631 VVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGGECWKAEEILRE 690

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           L   G    + + N +++ +C  GL  EA        + G+ P   TY      Y    M
Sbjct: 691 LQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRPCIVTYNTFVGGYAAKGM 750

Query: 312 KELVQKLLKRMEQNGIVPNK 331
              + ++L  M ++   PN+
Sbjct: 751 FAEIDEVLSYMTKHDCRPNE 770



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 134/304 (44%), Gaps = 13/304 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD--KAKALA 67
           D   ++ LI   G+ G    A  ++ EM  +G  P  + YNAL+ A     D   A+++ 
Sbjct: 489 DRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVI 548

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           K +    K KG    KP+  +Y+++L + A+   V  +N + K++++  + P       +
Sbjct: 549 KDM----KNKGF---KPSETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTL 601

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           + A  K   +  ME     ++ +  KPD++ FN ++  + ++   D+  ++   +     
Sbjct: 602 ILANFKCRALAGMERAFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGL 661

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRA 245
           +P L T+NS++  Y +     KAE + +++         I+Y  +I   G+C    +  A
Sbjct: 662 QPDLVTYNSLMDLYARGGECWKAEEILRELQNSGDKSDLISYNTVIK--GFCRQGLMHEA 719

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
                E+   G    + T N  +  Y   G+  E D +          P+  TYK++   
Sbjct: 720 LRTLSEMISRGIRPCIVTYNTFVGGYAAKGMFAEIDEVLSYMTKHDCRPNELTYKIVVDG 779

Query: 306 YTKA 309
           Y KA
Sbjct: 780 YCKA 783



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 115/248 (46%), Gaps = 1/248 (0%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-IKEMESV 143
           ++  Y  +L + ++    ++  A+F++++ES L+P + TYN ++D YGK G    ++  +
Sbjct: 208 DVRAYTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILGL 267

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L  M+S     D  T + +I + G+    D+ ++ F  L      P   T+N+++  +GK
Sbjct: 268 LDEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFGK 327

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A +  +A  + ++M      P  +TY  ++  Y           + D +++ G      T
Sbjct: 328 AGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVT 387

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
              M+ AY       +A  L++     G  P+  TY  +     K +  E + K+L  M+
Sbjct: 388 YTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDMK 447

Query: 324 QNGIVPNK 331
            +G  PN+
Sbjct: 448 VDGCAPNR 455



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 85/172 (49%), Gaps = 5/172 (2%)

Query: 34  FSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 93
           F  ++  G +PD  V+N++++  + +R      A  + +  +  G++   P++VTYN L+
Sbjct: 618 FQALQKHGYKPDLVVFNSMLS--MFSRKNMHDRAHEIMHLIQECGLQ---PDLVTYNSLM 672

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
              A+     +   + +EL  S    D+ +YN V+  + + G++ E    LS M S   +
Sbjct: 673 DLYARGGECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIR 732

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
           P I+T+N  +  Y  +  F ++++V   +     +P   T+  ++  Y KA+
Sbjct: 733 PCIVTYNTFVGGYAAKGMFAEIDEVLSYMTKHDCRPNELTYKIVVDGYCKAK 784



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 83/171 (48%), Gaps = 7/171 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++  Y  D  +++ ++++  +K     A  +   ++  G +PD   YN+L+  +    + 
Sbjct: 622 QKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGGEC 681

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDI 121
            KA  + L   Q        K ++++YN +++  C Q    + +  L + +   I  P I
Sbjct: 682 WKA-EEILRELQNSGD----KSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGI-RPCI 735

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 172
            TYN  +  Y   GM  E++ VLS M  + C+P+ +T+ +++D Y K + F
Sbjct: 736 VTYNTFVGGYAAKGMFAEIDEVLSYMTKHDCRPNELTYKIVVDGYCKAKKF 786


>gi|115444491|ref|NP_001046025.1| Os02g0170000 [Oryza sativa Japonica Group]
 gi|49388067|dbj|BAD25179.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535556|dbj|BAF07939.1| Os02g0170000 [Oryza sativa Japonica Group]
          Length = 397

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 142/297 (47%), Gaps = 6/297 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+      G    A  + SEMR  G  P+ +VYNA +   L    KA+   KA+  +
Sbjct: 15  YALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLL----KARCTEKAVEVY 70

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           Q+MK  ERC+ N  T+ +++    +A+       +F E+      P+I TY  +++A+ +
Sbjct: 71  QRMK-RERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAR 129

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G+ ++ E V   M+    +PD+  +N L+++Y +        ++F  + H   +P   +
Sbjct: 130 EGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRAS 189

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N ++  YG+A L   AE VF+++     +P+  ++  ++  +    N +R  E+  +L 
Sbjct: 190 YNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLH 249

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           K G       LNAML AY   G   + + LF      G   D  TY +   AY +A 
Sbjct: 250 KSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMERRG-DADVGTYNVAVNAYGRAG 305



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 129/259 (49%), Gaps = 3/259 (1%)

Query: 81  RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140
           +C P   TY +LLRA   A ++ +   +  E+ E  + P+   YN  +D   K    ++ 
Sbjct: 7   QCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKA 66

Query: 141 ESVLSRMKSNQCKPDIITFNLLIDSYGK-RQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
             V  RMK  +C+ +  TF L+I+ YGK +Q    M +VF  +     KP + T+ +++ 
Sbjct: 67  VEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSM-KVFNEMKSIGCKPNICTYTALVN 125

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
            + +  L  KAE VF++M    + P    Y  ++  Y        A EIF  +  +G + 
Sbjct: 126 AFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEP 185

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
             ++ N +++AY   GL  +A+ +FE     G++P   ++ LL  A+ ++      ++++
Sbjct: 186 DRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVM 245

Query: 320 KRMEQNGIVPNKRFFLEAL 338
            ++ ++G+ P+  F L A+
Sbjct: 246 AQLHKSGLTPDT-FALNAM 263



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 114/233 (48%)

Query: 112 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171
           L E+   P   TY  ++ AY   G +   E V+S M+ +   P+   +N  +D   K + 
Sbjct: 3   LLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARC 62

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
            +K  +V++ +   + +    TF  MI  YGKA+    +  VF +M ++   P+  TY  
Sbjct: 63  TEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTA 122

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           ++  +       +A E+F+E+ + G +  V   NA++EAY   GLP  A  +F    +MG
Sbjct: 123 LVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMG 182

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             PD ++Y +L  AY +A + E  + + + ++Q G+ P  +  +  L   + S
Sbjct: 183 CEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARS 235



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 145/324 (44%), Gaps = 7/324 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+++R   A+T  ++ +I V GK  Q   +M +F+EM++ GC+P+   Y AL+ A     
Sbjct: 73  MKRERCR-ANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFA--- 128

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +     KA   F++M+     +P++  YN L+ A ++A      + +F  +      PD
Sbjct: 129 -REGLCEKAEEVFEEMQQAGH-EPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPD 186

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             +YN ++DAYG+ G+ ++ E+V   +K     P + +  LL+ ++ +     + E+V  
Sbjct: 187 RASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMA 246

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            L  S   P     N+M+  Y +A      E +F  M   +      TY   +  YG   
Sbjct: 247 QLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAME-RRGDADVGTYNVAVNAYGRAG 305

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            V R    F  ++  G    V T  A + AY           + E   + G  PD+ T +
Sbjct: 306 YVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTAR 365

Query: 301 LLYKAYTKANMKELVQKLLKRMEQ 324
           +L  A +     E V  +++ M +
Sbjct: 366 VLLAACSDERQVEQVTAIVRSMHK 389


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 152/318 (47%), Gaps = 5/318 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           ++S L+    K+ +   AM +FS+MR  G  P+   Y A+I        K+  +  A+ Y
Sbjct: 265 VFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILC----KSGRVEDAMLY 320

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F++M   E   P  + YN L+         ++   L  E+ +  +  +   +N ++D++ 
Sbjct: 321 FEQMID-EGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHC 379

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G + E E +   M     KPDIIT++ LID Y      D+  ++  S++    KP   
Sbjct: 380 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCV 439

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T++++I  Y K      A  +F++M +   +P  ITY  I+         + A+E++  +
Sbjct: 440 TYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 499

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           +K G+ +++ST N +L   C N L  +A  +F+N   M +  ++ T+ ++  A  K    
Sbjct: 500 TKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRN 559

Query: 313 ELVQKLLKRMEQNGIVPN 330
           +  + L      NG+VPN
Sbjct: 560 DEAKDLFVAFSSNGLVPN 577



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 144/317 (45%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +IA + K      AM + + M  SG  PD   YN+++     +    +A+     + 
Sbjct: 126 YNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIV----FL 181

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KM+  +  +P++VTYN L+    +     +   +F  + +  L P+I TY  ++  Y  
Sbjct: 182 KKMRS-DGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYAT 240

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + EM  +L  M  N   P+   F++L+ +Y K++  ++   VF  +      P   T
Sbjct: 241 KGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVT 300

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + ++I    K+     A   F++M     +P  I Y  +I     C+   RA E+  E+ 
Sbjct: 301 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 360

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G  +     N++++++C  G   E++ LF+    +GV PD  TY  L   Y  A   +
Sbjct: 361 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMD 420

Query: 314 LVQKLLKRMEQNGIVPN 330
              KLL  M   G+ P+
Sbjct: 421 EATKLLASMVSVGMKPD 437



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 120/254 (47%), Gaps = 2/254 (0%)

Query: 79  MERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHES-ILAPDIYTYNGVMDAYGKNGM 136
           + R  P++ +YNILL   C + R+ + +  L     +     PD+ +Y+ V++ + K G 
Sbjct: 44  LRRGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGD 103

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           + +  S  + M   +  P+++T+N +I +  K Q  DK  +V  +++ S   P   T+NS
Sbjct: 104 LDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNS 163

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           ++  +  +    +A    +KM +    P  +TY  ++         + AR+IFD ++K G
Sbjct: 164 IVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRG 223

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
              +++T   +L+ Y   G   E   L +     G+ P+   + +L  AY K    E   
Sbjct: 224 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAM 283

Query: 317 KLLKRMEQNGIVPN 330
            +  +M Q G+ PN
Sbjct: 284 LVFSKMRQQGLNPN 297



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 142/321 (44%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++      GQ + A+    +MR+ G  PD   YN+L+  +L    +     K 
Sbjct: 157 DCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMD-YLCKNGRCTEARKI 215

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                K +G+   KP I TY  LL+  A    + +++ L   +  + + P+ Y ++ ++ 
Sbjct: 216 FDSMTK-RGL---KPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVC 271

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           AY K   ++E   V S+M+     P+ +T+  +I    K    +     F+ ++     P
Sbjct: 272 AYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 331

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               +NS+I          +AE +  +M       + I +  II  +     V  + ++F
Sbjct: 332 GNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF 391

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D + ++G    + T + +++ YC+ G   EA  L  +  ++G+ PD  TY  L   Y K 
Sbjct: 392 DLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKI 451

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
           +  +    L + ME +G+ P+
Sbjct: 452 SRMKDALVLFREMESSGVSPD 472



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 10/222 (4%)

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN--QCKPDIITFNLLIDSYGKRQAFDKME 176
           PD+++YN +++        +E   +L  M  +   C PD+++++ +I+ + K    DK  
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTY 108

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
             +  ++  +  P + T+NS+I    KA+   KA  V   M      P  +TY  I+  +
Sbjct: 109 STYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIV--H 166

Query: 237 GYCDNVSRAREIFDELSKL---GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
           G+C +  + +E    L K+   G +  V T N++++  C NG  TEA  +F++    G+ 
Sbjct: 167 GFCSS-GQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLK 225

Query: 294 PDSSTYKLLYKAY-TKANMKELVQKLLKRMEQNGIVPNKRFF 334
           P+ +TY  L + Y TK  + E+   LL  M +NGI PN   F
Sbjct: 226 PEITTYGTLLQGYATKGALVEM-HGLLDLMVRNGIHPNHYVF 266



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 143/360 (39%), Gaps = 48/360 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-------------LHTR 60
           Y  +I ++ K G+   AM  F +M + G  P   VYN+LI                L   
Sbjct: 301 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 360

Query: 61  DKAKALAKAL------GYFQKMKGMER-----------CKPNIVTYNILLRACAQARNVD 103
           D+   L           + ++ + +E             KP+I+TY+ L+     A  +D
Sbjct: 361 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMD 420

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +   L   +    + PD  TY+ +++ Y K   +K+   +   M+S+   PDIIT+N+++
Sbjct: 421 EATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIIL 480

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
               + +     ++++  +  S  +  L T+N ++    K +L   A  +FQ +  M   
Sbjct: 481 QGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLK 540

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
               T+  +I           A+++F   S  G      T   M E     GL  E D L
Sbjct: 541 LEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQL 600

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN------GIVPNKRFFLEA 337
           F +  + G T DS                 +V++LL+R E         ++  K F LEA
Sbjct: 601 FLSMEDNGCTVDSGMLNF------------IVRELLQRGEITRAGTYLSMIDEKHFSLEA 648



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 5/173 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI    K  + + A+ LF EM +SG  PD   YN ++     TR  A A    
Sbjct: 437 DCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 496

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +G  +  + +E     + TYNI+L    + +  D    +F+ L    L  +  T+N ++D
Sbjct: 497 VGITKSGRQLE-----LSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMID 551

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           A  K G   E + +     SN   P+  T+ L+ ++   +   ++++Q+F S+
Sbjct: 552 ALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSM 604


>gi|125580966|gb|EAZ21897.1| hypothetical protein OsJ_05550 [Oryza sativa Japonica Group]
          Length = 595

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 128/247 (51%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P+I+ YN+L+ +  + R +++  +++  L E+   P   TY  ++ AY   G +   E 
Sbjct: 172 RPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEG 231

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           V+S M+ +   P+   +N  +D   K +  +K  +V++ +   + +    TF  MI  YG
Sbjct: 232 VISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYG 291

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           KA+    +  VF +M ++   P+  TY  ++  +       +A E+F+E+ + G +  V 
Sbjct: 292 KAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVY 351

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
             NA++EAY   GLP  A  +F    +MG  PD ++Y +L  AY +A + E  + + + +
Sbjct: 352 AYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEEL 411

Query: 323 EQNGIVP 329
           +Q G+ P
Sbjct: 412 KQRGMSP 418



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 148/302 (49%), Gaps = 12/302 (3%)

Query: 40  SGCRPDPSVYNALITAHLHTR--DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACA 97
           S  RPD   YN LI ++   R  +KA+++  AL   Q       C P   TY +LLRA  
Sbjct: 169 SSFRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQ-------CVPTEDTYALLLRAYC 221

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
            A ++ +   +  E+ E  + P+   YN  +D   K    ++   V  RMK  +C+ +  
Sbjct: 222 NAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTE 281

Query: 158 TFNLLIDSYGK-RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           TF L+I+ YGK +Q    M +VF  +     KP + T+ +++  + +  L  KAE VF++
Sbjct: 282 TFTLMINVYGKAKQPMSSM-KVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEE 340

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M    + P    Y  ++  Y        A EIF  +  +G +   ++ N +++AY   GL
Sbjct: 341 MQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGL 400

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
             +A+ +FE     G++P   ++ LL  A+ ++      ++++ ++ ++G+ P+  F L 
Sbjct: 401 HEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDT-FALN 459

Query: 337 AL 338
           A+
Sbjct: 460 AM 461



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 145/317 (45%), Gaps = 5/317 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI   GKK Q   A  ++  +  + C P    Y  L+ A+ +    A +L +A
Sbjct: 174 DIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCN----AGSLHRA 229

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            G   +M+      PN   YN  L    +AR  ++   +++ +       +  T+  +++
Sbjct: 230 EGVISEMR-EHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMIN 288

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK         V + MKS  CKP+I T+  L++++ +    +K E+VF+ +  +  +P
Sbjct: 289 VYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEP 348

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  +N+++  Y +A L   A  +F  M  M   P   +Y  ++  YG       A  +F
Sbjct: 349 DVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVF 408

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +EL + G    + +   +L A+  +G  T  + +    H  G+TPD+     +  AY +A
Sbjct: 409 EELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARA 468

Query: 310 NMKELVQKLLKRMEQNG 326
              + +++L   ME+ G
Sbjct: 469 GRLDDMERLFAAMERRG 485



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 143/348 (41%), Gaps = 33/348 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR------------- 60
           Y+ L+      G    A  + SEMR  G  P+ +VYNA +   L  R             
Sbjct: 213 YALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMK 272

Query: 61  ------------------DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
                              KAK    ++  F +MK +  CKPNI TY  L+ A A+    
Sbjct: 273 RERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIG-CKPNICTYTALVNAFAREGLC 331

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           ++   +F+E+ ++   PD+Y YN +M+AY + G+ +    + S M+   C+PD  ++N+L
Sbjct: 332 EKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNIL 391

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           +D+YG+    +  E VF+ L      PT+ +   ++  + ++    + E V  ++     
Sbjct: 392 VDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGL 451

Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
           TP       ++  Y     +     +F  + + G D  V T N  + AY   G     + 
Sbjct: 452 TPDTFALNAMLNAYARAGRLDDMERLFAAMERRG-DADVGTYNVAVNAYGRAGYVGRMEA 510

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            F      G+  D  T+     AY +         +++ M   G  P+
Sbjct: 511 AFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPD 558



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 140/316 (44%), Gaps = 6/316 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           A+T  ++ +I V GK  Q   +M +F+EM++ GC+P+   Y AL+ A      +     K
Sbjct: 278 ANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFA----REGLCEK 333

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A   F++M+     +P++  YN L+ A ++A      + +F  +      PD  +YN ++
Sbjct: 334 AEEVFEEMQQAGH-EPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILV 392

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           DAYG+ G+ ++ E+V   +K     P + +  LL+ ++ +     + E+V   L  S   
Sbjct: 393 DAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLT 452

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P     N+M+  Y +A      E +F  M   +      TY   +  YG    V R    
Sbjct: 453 PDTFALNAMLNAYARAGRLDDMERLFAAME-RRGDADVGTYNVAVNAYGRAGYVGRMEAA 511

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F  ++  G    V T  A + AY           + E   + G  PD+ T ++L  A + 
Sbjct: 512 FAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARVLLAACSD 571

Query: 309 ANMKELVQKLLKRMEQ 324
               E V  +++ M +
Sbjct: 572 ERQVEQVTAIVRSMHK 587



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 114/220 (51%), Gaps = 14/220 (6%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH----LH 58
           +Q  +  D   Y+ L+    + G  + A  +FS M++ GC PD + YN L+ A+    LH
Sbjct: 342 QQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLH 401

Query: 59  TRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
             + A+A+ + L    K +GM    P + ++ +LL A A++ N  +   +  +LH+S L 
Sbjct: 402 --EDAEAVFEEL----KQRGM---SPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLT 452

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD +  N +++AY + G + +ME + + M+  +   D+ T+N+ +++YG+     +ME  
Sbjct: 453 PDTFALNAMLNAYARAGRLDDMERLFAAME-RRGDADVGTYNVAVNAYGRAGYVGRMEAA 511

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           F ++        + T+ + +  Y + +  G+   + ++M 
Sbjct: 512 FAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMV 551


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 157/324 (48%), Gaps = 12/324 (3%)

Query: 12  GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           GI +KL A    K     AM + + M  +G  PD   YN++    LH    +    +A+G
Sbjct: 215 GIQTKLTAQAMDK-----AMEVLNTMVKNGVMPDCMTYNSI----LHGYCSSGQPKEAIG 265

Query: 72  YFQKMKGMERCKPNIVTYNILLR-ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
             +KM+  +  +PN+VTY+ L+   C   R+  +   +F  + +  L PDI TY  ++  
Sbjct: 266 TLKKMRS-DGVEPNVVTYSSLMNYLCKNGRST-EARKIFDSMTKRGLEPDIATYRTLLQG 323

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K G + E E +   M     KPDIIT+N LID        D+  ++  S++    KP 
Sbjct: 324 HCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPD 383

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           + T+ ++I  Y +      A  +F++M +   +P+ ITY  I+    +    + A+E++ 
Sbjct: 384 IVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYV 443

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            ++K G  +++ST N +L   C N L  EA  +F+N     +  ++ T+ ++  A  K  
Sbjct: 444 SITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCG 503

Query: 311 MKELVQKLLKRMEQNGIVPNKRFF 334
             +  + L      NG+VP+ R +
Sbjct: 504 RMDEAKDLFAAHSANGLVPDVRTY 527



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 141/327 (43%), Gaps = 9/327 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++      GQ + A+    +MR+ G  P+   Y++L+  +L    ++    K 
Sbjct: 243 DCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMN-YLCKNGRSTEARKI 301

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                K +G+E   P+I TY  LL+   +   V +   LF  +    + PDI TYN ++D
Sbjct: 302 FDSMTK-RGLE---PDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLID 357

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
                G + E   +L+ M S   KPDI+T+  LI+ Y +    D    +FK ++ S   P
Sbjct: 358 GCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSP 417

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRARE 247
            + T+N ++      R    A+ ++  +T         TY   I ++G C N     A  
Sbjct: 418 NIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYN--IILHGLCKNNLTDEALR 475

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F  L      ++  T N M+ A    G   EA  LF      G+ PD  TY L+ +   
Sbjct: 476 MFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLI 535

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFF 334
           +    E +  L   ME+NG   + R  
Sbjct: 536 EQGSLEELDDLFLSMEENGCSADSRML 562



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 123/260 (47%), Gaps = 12/260 (4%)

Query: 83  KPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           + + +T+  LL+  CA  R  D ++ + + + E    PD+++YN ++         +E  
Sbjct: 124 RVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEAL 183

Query: 142 SVLSRMKSNQ---CKPDIITFNLLIDSYGKR--------QAFDKMEQVFKSLMHSKEKPT 190
            +L  M  ++     PD++++N +++ + K         QA DK  +V  +++ +   P 
Sbjct: 184 ELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPD 243

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             T+NS++  Y  +    +A    +KM +    P+ +TY  ++         + AR+IFD
Sbjct: 244 CMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFD 303

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            ++K G +  ++T   +L+ +C  G   E++ LF+    +GV PD  TY  L      A 
Sbjct: 304 SMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAG 363

Query: 311 MKELVQKLLKRMEQNGIVPN 330
             +   KLL  M   G+ P+
Sbjct: 364 KMDEATKLLASMVSVGVKPD 383



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 143/330 (43%), Gaps = 23/330 (6%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L+  + K G++  A  +F  M   G  PD + Y  L+  H     K   + ++   F
Sbjct: 282 YSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHC----KEGRVIESEKLF 337

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             M  +   KP+I+TYN L+  C  A  +D+   L   +    + PDI TY  +++ Y +
Sbjct: 338 DLMVRIG-VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCR 396

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              + +  ++   M S+   P+IIT+N+++      +     ++++ S+  S  +  L T
Sbjct: 397 VSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELST 456

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N ++    K  L  +A  +FQ +          T+  +I     C  +  A+++F   S
Sbjct: 457 YNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHS 516

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V T + M E     G   E D LF +    G + DS              +  
Sbjct: 517 ANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRM------------LNS 564

Query: 314 LVQKLLKR--MEQNG----IVPNKRFFLEA 337
           +V+KLL+R  + + G    ++  K F LEA
Sbjct: 565 IVRKLLQRGDITRAGTYLFMIDEKHFSLEA 594



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 5/226 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R    D   Y  L+    K+G+   +  LF  M   G +PD   YN LI         A
Sbjct: 307 KRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCC----LA 362

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             + +A      M  +   KP+IVTY  L+    +   +D   ALFKE+  S ++P+I T
Sbjct: 363 GKMDEATKLLASMVSVG-VKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIIT 421

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++            + +   +  +  + ++ T+N+++    K    D+  ++F++L 
Sbjct: 422 YNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLC 481

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
            +  +    TFN MI    K     +A+ +F   +A    P   TY
Sbjct: 482 LTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTY 527


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 148/328 (45%), Gaps = 6/328 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++ Y+ +   Y+ L+ +  KK +   A  L S M   GC P+   YN +I        KA
Sbjct: 353 EKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLC----KA 408

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             + + +   ++M     C P+IVT+N ++ A  +   VD    LF  + ES   P++ T
Sbjct: 409 TKVHEGVLLLEQMLS-NNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVT 467

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           YN ++    K+    + E +L  M   Q C PDIIT+N +ID   K +  D+  ++F  +
Sbjct: 468 YNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQM 527

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           +     P   T++ +I +  K R   +A  V + M    + P  ITY  +I  +    N+
Sbjct: 528 LSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNL 587

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A EI   L   G    V T +  ++     G   +A  L E     G+ PD+ TY  L
Sbjct: 588 DKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTL 647

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
            K +  A+  E    L + M Q G  P+
Sbjct: 648 LKGFCDASRTEDAVDLFEVMRQCGCEPD 675



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 151/322 (46%), Gaps = 6/322 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS ++  + K G+   A  L   M + GC P+   Y++L    LH   KA  L +A
Sbjct: 219 DVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSL----LHGLCKAGKLDEA 274

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               Q+M     C PNIVTYN ++    +   +D+   L +E+ +    P++ TY  ++D
Sbjct: 275 TALLQRMT-RSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLD 333

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A+ K G  ++   ++  M      P++ T+N L+D + K+   ++  Q+  S++     P
Sbjct: 334 AFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVP 393

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + ++N++I    KA    +   + ++M +    P  +T+  II        V  A E+F
Sbjct: 394 NVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELF 453

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKLLYKAYTK 308
           + + + G    + T N+++   C +    +A+ LL E +   G +PD  TY  +     K
Sbjct: 454 NLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCK 513

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
           +   +   KL  +M  +G+ P+
Sbjct: 514 SKRVDRAYKLFLQMLSDGLAPD 535



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 149/330 (45%), Gaps = 10/330 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR    +   Y  L+    + G    A+ L  +M   G RP+   YN +    +H     
Sbjct: 142 QRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNI----MHGLCSG 197

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           + L  AL  F++M+    C P++ TY+ ++ +  ++  VD    L + +     +P++ T
Sbjct: 198 RKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVT 257

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ ++    K G + E  ++L RM  + C P+I+T+N +ID + K    D+   + + ++
Sbjct: 258 YSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMV 317

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAE---YVFQKMTAMKYTPSFITYECIITMYGYCD 240
               +P + T+  ++  + K    GKAE    + + M    Y P+  TY  ++ M+   D
Sbjct: 318 DGGCQPNVVTYTVLLDAFCKC---GKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKD 374

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            V RA ++   + + G    V + N ++   C      E  LL E   +    PD  T+ 
Sbjct: 375 EVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFN 434

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +  A  K    ++  +L   ++++G  PN
Sbjct: 435 TIIDAMCKTYRVDIAYELFNLIQESGCTPN 464



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 155/351 (44%), Gaps = 15/351 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           Q+  + +   Y+ +IA + K  +    + L  +M ++ C PD   +N +I A   T  + 
Sbjct: 388 QKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTY-RV 446

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL-HESILAPDIY 122
               +     Q+      C PN+VTYN L+    ++R  DQ   L +E+  +   +PDI 
Sbjct: 447 DIAYELFNLIQE----SGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDII 502

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN V+D   K+  +     +  +M S+   PD +T++++I S  K +  D+   V + +
Sbjct: 503 TYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELM 562

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           + +   P   T+ ++I  + K     KA  + Q + +    P  +T+   I        +
Sbjct: 563 LKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRL 622

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY-KL 301
            +A E+ + + + G      T N +L+ +C      +A  LFE     G  PD++TY  L
Sbjct: 623 RQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTL 682

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGS 352
           +     K + K+L+ ++ K M   G   N           SS L  S S S
Sbjct: 683 VGHLVDKKSYKDLLAEVSKSMVDTGFKLNHE--------LSSKLEASVSAS 725



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 155/335 (46%), Gaps = 10/335 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D+  Y+ +I  + K  +   A+ L  EM ++G  P+   YN +    LH   KA  +  A
Sbjct: 43  DSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTV----LHGFCKANRVENA 98

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L   ++M  M  C P++V+Y  ++    +   VD+   +  ++ +    P++ TY  ++D
Sbjct: 99  LWLLEQMV-MRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVD 157

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-K 188
            + + G +     ++ +M     +P+ IT+N ++      +  D   Q+FK +  S    
Sbjct: 158 GFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCP 217

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAR 246
           P + T+++++ +  K+     A  + + M +   +P+ +TY  +  ++G C    +  A 
Sbjct: 218 PDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSL--LHGLCKAGKLDEAT 275

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +   +++ G    + T N +++ +C  G   EA  L E   + G  P+  TY +L  A+
Sbjct: 276 ALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAF 335

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            K    E    L++ M + G VPN   +   L+ F
Sbjct: 336 CKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMF 370



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 137/272 (50%), Gaps = 9/272 (3%)

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A   + A+ +F++M   + C P+ VTYN ++   +++  +D    L +E+ ++  AP+++
Sbjct: 23  AGQCSDAVLHFREMS--KTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVF 80

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN V+  + K   ++    +L +M    C PD++++  +I+   K    D+  +V   +
Sbjct: 81  SYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKM 140

Query: 183 MHSKEKPTLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           +    +P + T+ +++  + +   L G  E V +KMT   Y P+ ITY  I  M+G C  
Sbjct: 141 IQRGCQPNVITYGTLVDGFCRVGDLDGAVELV-RKMTERGYRPNAITYNNI--MHGLCSG 197

Query: 242 --VSRAREIFDELSKLGK-DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             +  A ++F E+ + G     V T + ++++   +G   +A  L E   + G +P+  T
Sbjct: 198 RKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVT 257

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y  L     KA   +    LL+RM ++G  PN
Sbjct: 258 YSSLLHGLCKAGKLDEATALLQRMTRSGCSPN 289


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 151/358 (42%), Gaps = 44/358 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L+    K+   R AM L  EMR  GC PD   YN LI A  +  D    + +AL   
Sbjct: 289 YSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGD----VDEALNIL 344

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP-------------- 119
             +     CKP+ VTY  +L++   +    +V  L  E+  +  AP              
Sbjct: 345 SNLPS-HGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQ 403

Query: 120 ---------------------DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
                                DI TY+ ++D     G + +   +LSR+KS  CKPD I 
Sbjct: 404 QGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIA 463

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +  ++      + +++ E++   ++ S   P   TFN+++ +  +  L  +A  V ++M+
Sbjct: 464 YTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMS 523

Query: 219 AMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
               +P  +TY CII   G C+   +  A E+  +L   G    + T N +L+  C    
Sbjct: 524 ENGCSPDIVTYNCIID--GLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDR 581

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
             +A+ L  N       PD  T+  +  +  +  +     + LK M +NG VPN   +
Sbjct: 582 WEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTY 639



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 155/337 (45%), Gaps = 13/337 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA-- 65
           +AD   YS ++  +   G+   A+ L S +++ GC+PD   Y  ++     T    +A  
Sbjct: 423 VADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEE 482

Query: 66  -LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            +A+ L           C P+ VT+N ++ +  Q   VD+   + +++ E+  +PDI TY
Sbjct: 483 LMAEML--------CSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTY 534

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++D       I +   +LS ++S  CKPDI+TFN L+        ++  EQ+  ++M 
Sbjct: 535 NCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMR 594

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
           S   P   TFN++I +  +  L  +A    + M      P+  TY  ++           
Sbjct: 595 SNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQA 654

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A E+   ++    D+   T N ++      G   EA  L     + G+ PD++TY+ L  
Sbjct: 655 ALELLSGMTNGTPDLI--TYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAY 712

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
              + +  +   ++L+R++  G+ P+  F+ + L  F
Sbjct: 713 GVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGF 749



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 130/290 (44%), Gaps = 11/290 (3%)

Query: 44  PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNV 102
           PD   +N LI A L  R +   +  AL  F  M  + R C P++VTY+ILL A  +    
Sbjct: 249 PDTFTFNPLIRA-LCVRGR---IPDALAVFDDM--LHRGCSPSVVTYSILLDATCKESGY 302

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
            Q  AL  E+      PDI TYN +++A    G + E  ++LS + S+ CKPD +T+  +
Sbjct: 303 RQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPV 362

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           + S    + + ++E++   +  +   P   TFN+++ +  +  L  +A  V   M+    
Sbjct: 363 LKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGC 422

Query: 223 TPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
               +TY  I+   G CD   V  A E+   L   G          +L+  C       A
Sbjct: 423 VADIVTYSSILD--GLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERA 480

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + L          PD  T+  +  +  +  + +   +++++M +NG  P+
Sbjct: 481 EELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPD 530



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 120/252 (47%), Gaps = 2/252 (0%)

Query: 84  PNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           P+  T+N L+RA C + R  D + A+F ++     +P + TY+ ++DA  K    ++  +
Sbjct: 249 PDTFTFNPLIRALCVRGRIPDAL-AVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMA 307

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +L  M++  C+PDI+T+N+LI++       D+   +  +L     KP   T+  ++ +  
Sbjct: 308 LLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLC 367

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
            +    + E +  +MT+    P  +T+  I+T       V RA E+ D +S+ G    + 
Sbjct: 368 GSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIV 427

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T +++L+  C  G   +A  L     + G  PD+  Y  + K        E  ++L+  M
Sbjct: 428 TYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEM 487

Query: 323 EQNGIVPNKRFF 334
             +   P++  F
Sbjct: 488 LCSDCPPDEVTF 499



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 126/320 (39%), Gaps = 46/320 (14%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ ++A + +KG    A+ +  +M  +GC PD   YN +I    +       +  A
Sbjct: 495 DEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCN----ESCIDDA 550

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +     ++    CKP+IVT+N LL+        +    L   +  S   PD  T+N V+ 
Sbjct: 551 MELLSDLQSCG-CKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVIT 609

Query: 130 AYGKNGMIKEMESVLSRMKSNQC---------------------------------KPDI 156
           +  + G++ +    L  M  N C                                  PD+
Sbjct: 610 SLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNGTPDL 669

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG--KAEYVF 214
           IT+N +I +  K    ++   + + ++ +   P   T+ S+   YG  R  G  +A  + 
Sbjct: 670 ITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLA--YGVCREDGTDRAVRML 727

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +++     +P    Y  +  + G+C +     A + F  +   G     ST   +LEA  
Sbjct: 728 RRVQDTGLSPDTTFYNDV--LLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALA 785

Query: 273 MNGLPTEADLLFENSHNMGV 292
             GL  EA  L  +  ++GV
Sbjct: 786 YGGLLDEAKRLLASLCSLGV 805



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 14/220 (6%)

Query: 133 KNGMIKEMESVLSRMKSN---QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           + G I E   +   M S     C P ++  N+LI            E+VF +L  S    
Sbjct: 162 QRGEIDEALVLFDSMASGGGRNCPP-VVPCNILIKRLCSDGRVSDAERVFAALGPSA--- 217

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           T+ T+N+M+  Y +A   G+ E   + +  M + P   T+  +I        +  A  +F
Sbjct: 218 TVVTYNTMVNGYCRA---GRIEDARRLINGMPFPPDTFTFNPLIRALCVRGRIPDALAVF 274

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D++   G    V T + +L+A C      +A  L +     G  PD  TY +L  A    
Sbjct: 275 DDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNE 334

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQ 349
              +    +L  +  +G  P+   +   L+    SL GS+
Sbjct: 335 GDVDEALNILSNLPSHGCKPDAVTYTPVLK----SLCGSE 370


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 156/335 (46%), Gaps = 21/335 (6%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  +  IY+ +I  + K  Q   A+ L + M   G RPD   YN+LI+   ++       
Sbjct: 182 YEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNS------- 234

Query: 67  AKALGYFQKMKGMERCK------PNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
               G +     M  C       P++ T+N L+ AC +   + +   L++E+    L PD
Sbjct: 235 ----GRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPD 290

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           I TY+ ++        + E E +   M S  C PD++T+++LI+ Y K +  +   ++F 
Sbjct: 291 IVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFC 350

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +          T+  +I  Y +A     AE +F+ M      P+ ITY   + ++G CD
Sbjct: 351 EMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYN--VLLHGLCD 408

Query: 241 N--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
           N  + +A  I  ++ K G D  + T N ++   C  G   +A  L+ + +  G+TPD  T
Sbjct: 409 NGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWT 468

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
           Y  +     K  ++     L ++M+++GI+PN+ +
Sbjct: 469 YTAMMLGLYKKGLRGEADALFRKMKEDGILPNECY 503



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 137/313 (43%), Gaps = 9/313 (2%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           L+    +  Q  LA+    +M   G  PD   + +L+        +   +  AL  F +M
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFC----RGDRIYDALYMFDRM 177

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
             M   +PN+V YN ++    +++ VD    L   +    + PD  TYN ++     +G 
Sbjct: 178 VEMGY-EPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGR 236

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
             +   ++S M   +  PD+ TFN LID+  K     + E++++ ++     P + T++ 
Sbjct: 237 WDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSL 296

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSK 254
           +I          +AE +F  M +    P  +TY  +I   GYC +  V    ++F E+S+
Sbjct: 297 LIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILIN--GYCKSKKVEHGMKLFCEMSQ 354

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
            G      T   +++ YC  G    A+ +F+     GV P+  TY +L          E 
Sbjct: 355 RGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEK 414

Query: 315 VQKLLKRMEQNGI 327
              +L  M+++G+
Sbjct: 415 ALVILADMQKSGM 427



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 147/325 (45%), Gaps = 12/325 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           IAD   +S+L++ + K  +  + ++L+ +M+  G   +    N L+        +   L+
Sbjct: 81  IAD---FSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFC----RCSQLS 133

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            AL +  KM  +   +P+IVT+  LL    +   +     +F  + E    P++  YN +
Sbjct: 134 LALSFLGKMMKLGH-EPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTI 192

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D   K+  +     +L+RM+ +  +PD +T+N LI        +D   ++   +   + 
Sbjct: 193 IDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREI 252

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRA 245
            P + TFN++I    K     +AE ++++M      P  +TY  +I  YG C    +  A
Sbjct: 253 YPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLI--YGLCMYSRLDEA 310

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            ++F  +   G    V T + ++  YC +        LF      GV  ++ TY +L + 
Sbjct: 311 EQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQG 370

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
           Y +A    + +++ K M   G+ PN
Sbjct: 371 YCRAGKLNVAEEIFKWMVFCGVPPN 395



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 122/289 (42%), Gaps = 37/289 (12%)

Query: 79  MERCKP--NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           M +C+P  +I  ++ LL A ++ +  D V  L++++    +  ++ T N +++ + +   
Sbjct: 72  MVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQ 131

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSY--GKR-----QAFDKMEQ------------ 177
           +    S L +M     +PDI+TF  L++ +  G R       FD+M +            
Sbjct: 132 LSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNT 191

Query: 178 VFKSLMHSKE----------------KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           +   L  SK+                +P   T+NS+I     +     A  +   MT  +
Sbjct: 192 IIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKRE 251

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
             P   T+  +I        +S A E+++E+ +   D  + T + ++   CM     EA+
Sbjct: 252 IYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAE 311

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +F    + G  PD  TY +L   Y K+   E   KL   M Q G+V N
Sbjct: 312 QMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRN 360



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 10/231 (4%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA-HLHT 59
           M K+  Y  D   ++ LI    K+G+   A  L+ EM      PD   Y+ LI    +++
Sbjct: 247 MTKREIY-PDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYS 305

Query: 60  R-DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
           R D+A+ +      F   KG   C P++VTY+IL+    +++ V+    LF E+ +  + 
Sbjct: 306 RLDEAEQMFG----FMVSKG---CFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVV 358

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
            +  TY  ++  Y + G +   E +   M      P+IIT+N+L+         +K   +
Sbjct: 359 RNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVI 418

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
              +  S     + T+N +I    KA     A  ++  +     TP   TY
Sbjct: 419 LADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTY 469



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/192 (20%), Positives = 81/192 (42%), Gaps = 7/192 (3%)

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
            D    +F  ++  +  P++  F+ ++    K +      Y++++M  +    +  T   
Sbjct: 62  LDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           ++  +  C  +S A     ++ KLG +  + T  ++L  +C      +A  +F+    MG
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMG 181

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSG 351
             P+   Y  +     K+   +    LL RME +GI P+         T++S ++G  + 
Sbjct: 182 YEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDA-------VTYNSLISGLCNS 234

Query: 352 SAKTDLTRSLST 363
               D TR +S 
Sbjct: 235 GRWDDATRMVSC 246


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 148/317 (46%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI  + K G+   A+ LF +M   GC+PD   Y  +I        K    A A G  
Sbjct: 164 FTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLC----KMGETAAAAGLI 219

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KM G   C+P++VTY+ L+ +  + R V++   +F  +    ++P + +Y  ++     
Sbjct: 220 KKM-GEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCS 278

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
               KE  ++L+ M S    PDI+TF+LLID + K     + + V K++     +P + T
Sbjct: 279 FSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVIT 338

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS++  Y       +A  +F  M      P   +Y  +I  Y     +  A+++F+E+ 
Sbjct: 339 YNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMI 398

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G      +   ++ A+C  G   EA  LF++ H  G  PD  TY +L + + K     
Sbjct: 399 HQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLG 458

Query: 314 LVQKLLKRMEQNGIVPN 330
              +L + M+   + PN
Sbjct: 459 KAFRLFRAMQGTYLKPN 475



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 153/325 (47%), Gaps = 5/325 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I  + K G+T  A  L  +M   GC+PD   Y+ LI +      K + + +A
Sbjct: 195 DVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLC----KDRLVNEA 250

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  F  MK  +   P +V+Y  L++         + +A+  E+    + PDI T++ ++D
Sbjct: 251 LDIFSYMKA-KGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLID 309

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            + K G + E + VL  M     +P++IT+N L+  Y  +    +  ++F  ++    KP
Sbjct: 310 IFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKP 369

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + +++ +I  Y   +   +A+ +F +M     TP+ ++Y  +I  +     +  ARE+F
Sbjct: 370 DVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELF 429

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            ++   G    + T + +LE +C  G   +A  LF       + P+   Y +L  +  K+
Sbjct: 430 KDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKS 489

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
                 +KL   +  +G+ P+ + +
Sbjct: 490 GNLNHARKLFSELFVHGLQPDVQIY 514



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 146/332 (43%), Gaps = 12/332 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFS-EMRNSGCRPDPSVYNALITAHL---HTRDKAKALAKA 69
           ++KL++ + +  Q   A+   S +M  +G  P+    N LI       H       LAK 
Sbjct: 93  FNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAKV 152

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +       G++   P I+T+  L+    +A    Q   LF ++      PD+YTY  +++
Sbjct: 153 IKL-----GLQ---PTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIIN 204

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K G       ++ +M    C+PD++T++ LIDS  K +  ++   +F  +      P
Sbjct: 205 GLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISP 264

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           T+ ++ S+I          +A  +  +MT++   P  +T+  +I ++    NV  A+ + 
Sbjct: 265 TVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVL 324

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             ++++G +  V T N+++  Y +     EA  LF+     G  PD  +Y +L   Y   
Sbjct: 325 KTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMV 384

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
              +  ++L   M   G+ PN   +   +  F
Sbjct: 385 KRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAF 416



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 138/318 (43%), Gaps = 5/318 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  +    + + A  + +EM +    PD   ++ LI        K   + +A G  
Sbjct: 269 YTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFC----KEGNVLEAQGVL 324

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M  M   +PN++TYN L+   +    V +   LF  +      PD+++Y+ +++ Y  
Sbjct: 325 KTMTEMG-VEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCM 383

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              I E + + + M      P+ +++  LI ++ +     +  ++FK +  +   P L T
Sbjct: 384 VKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCT 443

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           ++ ++  + K    GKA  +F+ M      P+ + Y  +I       N++ AR++F EL 
Sbjct: 444 YSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELF 503

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V     ++   C  GL  EA   F      G  P+  +Y ++ + + +   + 
Sbjct: 504 VHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDES 563

Query: 314 LVQKLLKRMEQNGIVPNK 331
              +L+  M   G V ++
Sbjct: 564 RAVQLIGEMRDKGFVADE 581



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 108/252 (42%), Gaps = 9/252 (3%)

Query: 95  ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS---RMKSNQ 151
           A +  RN+D   A F  +      P I  +N ++ A  +  M +  ++V+S   +M+   
Sbjct: 64  ASSSFRNIDDALASFNHMLHRKPLPCIIQFNKLLSAIVR--MRQYYDAVISLSKQMELAG 121

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
             P+  T N+LI+ +   Q  D    V   ++    +PT+ TF ++I    KA    +A 
Sbjct: 122 LSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQAL 181

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
            +F  M A    P   TY  II   G C     + A  +  ++ ++G    V T + +++
Sbjct: 182 ELFDDMVARGCQPDVYTYTTIIN--GLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLID 239

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           + C + L  EA  +F      G++P   +Y  L +     +  +    +L  M    I+P
Sbjct: 240 SLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMP 299

Query: 330 NKRFFLEALETF 341
           +   F   ++ F
Sbjct: 300 DIVTFSLLIDIF 311



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 5/108 (4%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ LI  M K G    A  LFSE+   G +PD  +Y  +I        K   L +AL  
Sbjct: 478 MYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLC----KEGLLDEALEA 533

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           F+KM+  + C PN  +YN+++R   Q ++  +   L  E+ +     D
Sbjct: 534 FRKMEE-DGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVAD 580


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 154/321 (47%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +++ LI    K+ +   AM +FS+MR  G  P+   Y A+I        K+ ++  A
Sbjct: 370 DHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILC----KSGSVDDA 425

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           + YF++M   E   PNI+ Y  L+ +       D+   L  E+ +  +  +   +N ++ 
Sbjct: 426 MLYFEQMID-EGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIH 484

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           ++ K G + E E +   M     KP++IT++ LID Y      D+  ++  S+     KP
Sbjct: 485 SHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKP 544

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T+N++I  Y +      A  +F++M +   +P+ ITY  I+    +    + A+E++
Sbjct: 545 DCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELY 604

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             ++K G  +++ST N +L   C N L  EA  +F+N     +  ++ T+ ++  A  K 
Sbjct: 605 VGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKV 664

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +  + L      NG+VPN
Sbjct: 665 GRNDEAKDLFVAFSSNGLVPN 685



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 151/322 (46%), Gaps = 7/322 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS +IA + K      AM + + M  +G  P+   YN++    LH    ++   +A
Sbjct: 230 DVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSI----LHGYCSSEQPKEA 285

Query: 70  LGYFQKMKGMERCKPNIVTYNILLR-ACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           +G+ +KM+  +  +P++VTYN L+   C   R+  +   +F  + +  L PDI TY  ++
Sbjct: 286 IGFLKKMRS-DGVEPDVVTYNSLMDYLCKNGRST-EARKIFDSMTKRGLEPDIATYCTLL 343

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
             Y   G + EM ++L  M  N   PD   FN+LI +Y K++  D+   VF  +      
Sbjct: 344 QGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLN 403

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P + T+ ++I    K+     A   F++M     TP+ I Y  +I      D   +A E+
Sbjct: 404 PNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEEL 463

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             E+   G  +     N+++ ++C  G   E++ LF+    +GV P+  TY  L   Y  
Sbjct: 464 ILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCL 523

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
           A   +   KLL  M   G+ P+
Sbjct: 524 AGKMDEATKLLSSMFSVGMKPD 545



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 139/320 (43%), Gaps = 7/320 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI    + G+  L       +   G R +   +  L+      +  + A+   L   
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 74  QKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNAL--FKELHESILAPDIYTYNGVMDA 130
            ++     C P++ +  ILL+  C + R+ + +  L    +      APD+ +Y  V++ 
Sbjct: 150 TELS----CMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVING 205

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K G   +  S    M   +  PD++T++ +I +  K QA DK  +V  +++ +   P 
Sbjct: 206 FFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPN 265

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             T+NS++  Y  +    +A    +KM +    P  +TY  ++         + AR+IFD
Sbjct: 266 CMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFD 325

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            ++K G +  ++T   +L+ Y   G   E   L +     G+ PD   + +L  AY K  
Sbjct: 326 SMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQE 385

Query: 311 MKELVQKLLKRMEQNGIVPN 330
             +    +  +M Q+G+ PN
Sbjct: 386 KVDEAMLVFSKMRQHGLNPN 405



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 135/304 (44%), Gaps = 5/304 (1%)

Query: 31  MWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90
           + + ++ R  G  PD   Y  +I       D  KA +    Y + +    R  P++VTY+
Sbjct: 181 LHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYST---YHEMLD--RRISPDVVTYS 235

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
            ++ A  + + +D+   +   + ++ + P+  TYN ++  Y  +   KE    L +M+S+
Sbjct: 236 SIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSD 295

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
             +PD++T+N L+D   K     +  ++F S+     +P + T+ +++  Y       + 
Sbjct: 296 GVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEM 355

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
             +   M      P    +  +I  Y   + V  A  +F ++ + G +  V T  A++  
Sbjct: 356 HALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGI 415

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            C +G   +A L FE   + G+TP+   Y  L  +    +  +  ++L+  M   GI  N
Sbjct: 416 LCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLN 475

Query: 331 KRFF 334
             FF
Sbjct: 476 TIFF 479



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 123/256 (48%), Gaps = 12/256 (4%)

Query: 87  VTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           +T+  LL+  CA  R  D ++ + + + E    PD+++   ++         +E   +L 
Sbjct: 123 ITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLH 182

Query: 146 RMKSNQ---CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
            M  ++     PD++++  +I+ + K    DK    +  ++  +  P + T++S+I    
Sbjct: 183 MMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALC 242

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL---GKDM 259
           K +   KA  V   M      P+ +TY  I  ++GYC +  + +E    L K+   G + 
Sbjct: 243 KGQAMDKAMEVLTTMVKNGVMPNCMTYNSI--LHGYCSS-EQPKEAIGFLKKMRSDGVEP 299

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKL 318
            V T N++++  C NG  TEA  +F++    G+ PD +TY  L + Y TK  + E+   L
Sbjct: 300 DVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEM-HAL 358

Query: 319 LKRMEQNGIVPNKRFF 334
           L  M +NGI P+   F
Sbjct: 359 LDLMVRNGIHPDHHVF 374



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/283 (20%), Positives = 115/283 (40%), Gaps = 6/283 (2%)

Query: 67  AKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           A A+  + +M   G  +  P + TY IL+  C +A  +D   A    + +     +  T+
Sbjct: 66  AAAVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITF 125

Query: 125 NGVMDAYGKNGMIKE-MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
             ++     +    + M+ VL RM    C PD+ +  +L+          +  ++   + 
Sbjct: 126 TPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMA 185

Query: 184 HSK---EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
             +     P + ++ ++I  + K     KA   + +M   + +P  +TY  II       
Sbjct: 186 DDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQ 245

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            + +A E+   + K G      T N++L  YC +  P EA    +   + GV PD  TY 
Sbjct: 246 AMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYN 305

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
            L     K       +K+   M + G+ P+   +   L+ +++
Sbjct: 306 SLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYAT 348



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 13/191 (6%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI      G+   A  L S M + G +PD   YN LI  +     +   +  AL  F
Sbjct: 514 YSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYC----RVSRMDDALALF 569

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M       PNI+TYNI+L+     R       L+  + +S    ++ TYN ++    K
Sbjct: 570 KEMVS-SGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCK 628

Query: 134 NGMIKEMESVLSRMKSNQCKPDII----TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           N +  E      RM  N C  D+     TFN++I +  K    D+ + +F +   +   P
Sbjct: 629 NNLTDEA----LRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVP 684

Query: 190 TLPTFNSMIIN 200
              T+  M  N
Sbjct: 685 NYWTYRLMAEN 695



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 5/173 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI    +  +   A+ LF EM +SG  P+   YN ++    HTR  A A    
Sbjct: 545 DCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELY 604

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +G  +    +E     + TYNI+L    +    D+   +F+ L  + L  +  T+N ++ 
Sbjct: 605 VGITKSGTQLE-----LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIG 659

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           A  K G   E + +     SN   P+  T+ L+ ++   +   ++++Q+F S+
Sbjct: 660 ALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSM 712



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 84/208 (40%), Gaps = 10/208 (4%)

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY-G 202
           ++R  + +  P + T+ +LI    +    D       +++    +    TF  ++     
Sbjct: 75  MARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCA 134

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV- 261
             R     + V ++MT +   P    + C I + G CD  +R++E  + L  +  D    
Sbjct: 135 DKRTSDAMDIVLRRMTELSCMPD--VFSCTILLKGLCDE-NRSQEALELLHMMADDRGGG 191

Query: 262 STLNAMLEAYCMNGLPTEADL--LFENSHNM---GVTPDSSTYKLLYKAYTKANMKELVQ 316
           S  + +     +NG   E D    +   H M    ++PD  TY  +  A  K    +   
Sbjct: 192 SAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAM 251

Query: 317 KLLKRMEQNGIVPNKRFFLEALETFSSS 344
           ++L  M +NG++PN   +   L  + SS
Sbjct: 252 EVLTTMVKNGVMPNCMTYNSILHGYCSS 279


>gi|218197339|gb|EEC79766.1| hypothetical protein OsI_21159 [Oryza sativa Indica Group]
          Length = 410

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 148/323 (45%), Gaps = 9/323 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D    + L+    K G    A  +F EM   G  P+   Y AL+  +     + K  A  
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFA-- 94

Query: 70  LGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F++M+  G+E   PN+ TYN L+    +    ++  +LF E+    +  ++ +YN +
Sbjct: 95  --LFEEMRRGGVE---PNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTL 149

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +    ++G + +   +L  M++   +P IITFNLL+D YGK          F  +  +  
Sbjct: 150 IAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGF 209

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P+  T+N +I  + +AR   +A      M      P+ +TY  +I  +   +++ +A E
Sbjct: 210 QPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFE 269

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           I   + K G ++   T   ++ A CM G   +A  LF++    GV P +  Y ++   Y 
Sbjct: 270 ILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYG 329

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           +        KL+  M Q G++PN
Sbjct: 330 REGSSYKALKLIMEMRQKGLIPN 352



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 118/257 (45%), Gaps = 5/257 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LIA + + G+   A  L   MR  G RP    +N L+  +     KA  ++ AL +F
Sbjct: 146 YNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGY----GKAGKMSNALPFF 201

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +MK     +P+ VTYN+L+    +AR++ + N    ++ E  L P   TY  ++D++ +
Sbjct: 202 NQMKAAG-FQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFAR 260

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              + +   +L+ M+    + D  T+ +L+ +           ++F+S+     +P+   
Sbjct: 261 ENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVI 320

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           ++ MI  YG+     KA  +  +M      P+  +Y   I +    D    A  + D++ 
Sbjct: 321 YDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDMV 380

Query: 254 KLGKDMKVSTLNAMLEA 270
           + G     S   A+L+A
Sbjct: 381 RAGLQTSESICQALLDA 397



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 44/332 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+      GQ      LF EMR  G  P+   YN LI     T +      +A   F
Sbjct: 76  YTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGE----FERARSLF 131

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  +G+ R   N+V+YN L+    +   +     L   +      P I T+N ++D Y
Sbjct: 132 DEMPVRGIVR---NVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGY 188

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           GK G +       ++MK+   +P  +T+N+LI  + + +   +  +    +     +PT 
Sbjct: 189 GKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTK 248

Query: 192 PTFNSMIINYGKARLQGKA-----------------------------------EYVFQK 216
            T+  +I ++ +    GKA                                     +FQ 
Sbjct: 249 VTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQS 308

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M      PS + Y+ +I  YG   +  +A ++  E+ + G     ++    +   C +  
Sbjct: 309 MGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDK 368

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             EA+ L ++    G+    S  + L  A  +
Sbjct: 369 CQEAEALLDDMVRAGLQTSESICQALLDAKAR 400



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/251 (19%), Positives = 100/251 (39%), Gaps = 4/251 (1%)

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
           R CA       +  L +       A D+     +++   K G + E   V   M      
Sbjct: 11  RLCAAGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLA 70

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P+ +T+  L+  Y      +K   +F+ +     +P L T+N +I  + +     +A  +
Sbjct: 71  PNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSL 130

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
           F +M       + ++Y  +I   G C +  +  A ++ D +   G    + T N +++ Y
Sbjct: 131 FDEMPVRGIVRNVVSYNTLIA--GLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGY 188

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
              G  + A   F      G  P + TY +L   + +A       + L  M++ G+ P K
Sbjct: 189 GKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTK 248

Query: 332 RFFLEALETFS 342
             +   +++F+
Sbjct: 249 VTYTILIDSFA 259



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 91/232 (39%), Gaps = 8/232 (3%)

Query: 135 GMIKEMESVLSR-MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           G ++   ++L+R  KS     D+     L++   K     +  +VF  +      P   T
Sbjct: 16  GDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVT 75

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + +++  Y     + K   +F++M      P+  TY C+I  +       RAR +FDE+ 
Sbjct: 76  YTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMP 135

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V + N ++   C +G   +A  L +     G  P   T+ LL   Y KA    
Sbjct: 136 VRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMS 195

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRSLSTAK 365
                  +M+  G  P+         T++  +AG       T   R+LS  K
Sbjct: 196 NALPFFNQMKAAGFQPSA-------VTYNMLIAGFCRARDMTRANRALSDMK 240


>gi|218190151|gb|EEC72578.1| hypothetical protein OsI_06020 [Oryza sativa Indica Group]
          Length = 738

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 138/278 (49%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P+I+ YN+L+ +  + R +++  +++  L E+   P   TY  ++ AY   G +   E 
Sbjct: 315 RPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEG 374

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           V+S M+ +   P+   +N  +D   K +  +K  +V++ +   + +    TF  MI  YG
Sbjct: 375 VISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYG 434

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           KA+    +  VF +M ++   P+  TY  ++  +       +A E+F+E+ + G +  V 
Sbjct: 435 KAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVY 494

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
             NA++EAY   GLP  A  +F    +MG  PD ++Y +L  AY +A + E  + + + +
Sbjct: 495 AYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEEL 554

Query: 323 EQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRS 360
           +Q G+ P  +  +  L   + S   ++       L +S
Sbjct: 555 KQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKS 592



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 148/302 (49%), Gaps = 12/302 (3%)

Query: 40  SGCRPDPSVYNALITAHLHTR--DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACA 97
           S  RPD   YN LI ++   R  +KA+++  AL   Q       C P   TY +LLRA  
Sbjct: 312 SSFRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQ-------CVPTEDTYALLLRAYC 364

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
            A ++ +   +  E+ E  + P+   YN  +D   K    ++   V  RMK  +C+ +  
Sbjct: 365 NAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTE 424

Query: 158 TFNLLIDSYGK-RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           TF L+I+ YGK +Q    M +VF  +     KP + T+ +++  + +  L  KAE VF++
Sbjct: 425 TFTLMINVYGKAKQPMSSM-KVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEE 483

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M    + P    Y  ++  Y        A EIF  +  +G +   ++ N +++AY   GL
Sbjct: 484 MQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGL 543

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
             +A+ +FE     G++P   ++ LL  A+ ++      ++++ ++ ++G+ P+  F L 
Sbjct: 544 HEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDT-FALN 602

Query: 337 AL 338
           A+
Sbjct: 603 AM 604



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 146/317 (46%), Gaps = 5/317 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI   GKK Q   A  ++  +  + C P    Y  L+ A+ +    A +L +A
Sbjct: 317 DIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCN----AGSLHRA 372

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            G   +M+      PN   YN  L    +AR  ++   +++ +       +  T+  +++
Sbjct: 373 EGVISEMRE-HGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMIN 431

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK         V + MKS  CKP+I T+  L++++ +    +K E+VF+ +  +  +P
Sbjct: 432 VYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEP 491

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  +N+++  Y +A L   A  +F  M  M   P   +Y  ++  YG       A  +F
Sbjct: 492 DVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVF 551

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +EL + G    + +   +L A+  +G  T  + +    H  G+TPD+     +  AY +A
Sbjct: 552 EELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARA 611

Query: 310 NMKELVQKLLKRMEQNG 326
              + +++LL  ME+ G
Sbjct: 612 GRLDDMERLLAAMERRG 628



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 142/348 (40%), Gaps = 33/348 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR------------- 60
           Y+ L+      G    A  + SEMR  G  P+ +VYNA +   L  R             
Sbjct: 356 YALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMK 415

Query: 61  ------------------DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
                              KAK    ++  F +MK +  CKPNI TY  L+ A A+    
Sbjct: 416 RERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIG-CKPNICTYTALVNAFAREGLC 474

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           ++   +F+E+ ++   PD+Y YN +M+AY + G+ +    + S M+   C+PD  ++N+L
Sbjct: 475 EKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNIL 534

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           +D+YG+    +  E VF+ L      PT+ +   ++  + ++    + E V  ++     
Sbjct: 535 VDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGL 594

Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
           TP       ++  Y     +     +   + + G D  V T N  + AY   G     + 
Sbjct: 595 TPDTFALNAMLNAYARAGRLDDMERLLAAMERRG-DADVGTYNVAVNAYGRAGYVGRMEA 653

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            F      G+  D  T+     AY +         +++ M   G  P+
Sbjct: 654 AFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPD 701



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 144/318 (45%), Gaps = 10/318 (3%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           A+T  ++ +I V GK  Q   +M +F+EM++ GC+P+   Y AL+ A      +     K
Sbjct: 421 ANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFA----REGLCEK 476

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A   F++M+     +P++  YN L+ A ++A      + +F  +      PD  +YN ++
Sbjct: 477 AEEVFEEMQQAGH-EPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILV 535

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           DAYG+ G+ ++ E+V   +K     P + +  LL+ ++ +     + E+V   L  S   
Sbjct: 536 DAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLT 595

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAM--KYTPSFITYECIITMYGYCDNVSRAR 246
           P     N+M+  Y +A   G+ + + + + AM  +      TY   +  YG    V R  
Sbjct: 596 PDTFALNAMLNAYARA---GRLDDMERLLAAMERRGDADVGTYNVAVNAYGRAGYVGRME 652

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
             F  ++  G    V T  A + AY           + E   + G  PD+ T ++L  A 
Sbjct: 653 AAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARVLLAAC 712

Query: 307 TKANMKELVQKLLKRMEQ 324
           +     E V  +++ M +
Sbjct: 713 SDERQVEQVTAIVRSMHK 730


>gi|242060656|ref|XP_002451617.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
 gi|241931448|gb|EES04593.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
          Length = 593

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 131/262 (50%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P+I+ YN+L+ A  Q R +++  +++  L E+   P   TY  ++ AY  +G +   E 
Sbjct: 162 RPDIICYNLLIDAYGQKRQLNKAESIYMALLEAHCVPTEDTYALLLRAYCNSGQLHRAEG 221

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           V+S M+ N   P    +N  +D   K +  +K  +V++ +   + +    T+  MI  YG
Sbjct: 222 VISEMQKNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYG 281

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           KA+    +  VF +M  +   P+  TY  ++  +       +A E+F+E+ + G +  V 
Sbjct: 282 KAKQPMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVY 341

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
             NA++EAY   GLP  A  +F    +MG  PD ++Y +L  AY +A + +  +   + +
Sbjct: 342 AYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQEL 401

Query: 323 EQNGIVPNKRFFLEALETFSSS 344
           +Q G+ P  +  +  L   + S
Sbjct: 402 KQQGMRPTMKSHMLLLSAHAKS 423



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 152/386 (39%), Gaps = 74/386 (19%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR------------- 60
           Y+ L+      GQ   A  + SEM+ +G  P  +VYNA +   L  R             
Sbjct: 203 YALLLRAYCNSGQLHRAEGVISEMQKNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMK 262

Query: 61  ------------------DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
                              KAK    +L  F +MK +  CKPNI TY  L+ A A+    
Sbjct: 263 KERCRTNTETYTLMINVYGKAKQPMSSLKVFNEMKTIG-CKPNICTYTALVNAFAREGLC 321

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           ++   +F+E+ ++   PD+Y YN +M+AY + G+ +    + S M+   C+PD  ++N+L
Sbjct: 322 EKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNIL 381

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT----------------------------- 193
           +D+YG+     + E  F+ L     +PT+ +                             
Sbjct: 382 VDAYGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHAKSGNVARCEEVMAQLHKSGL 441

Query: 194 ------FNSMIINYGKA-------RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
                  N+M+  YG+A       RL G  E            P   TY  ++ +YG   
Sbjct: 442 RPDTFALNAMLNAYGRAGRLDDMERLLGAMERGGDDDAGGGAAPDTSTYNVLVNVYGRAG 501

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            + R    F  L+  G    V T  + + AY           +FE   + G  PD+ T K
Sbjct: 502 YLDRMEAAFRALAARGLAADVVTWTSRIGAYARKKEYGRCLEIFEEMVDAGCYPDAGTAK 561

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNG 326
           +L  A +     E V  +++ M ++ 
Sbjct: 562 VLLAACSDERQVEQVTAIVRSMHKDA 587



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 139/299 (46%), Gaps = 6/299 (2%)

Query: 40  SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 99
           S  RPD   YN LI A+   R   KA +  +   +       C P   TY +LLRA   +
Sbjct: 159 SSFRPDIICYNLLIDAYGQKRQLNKAESIYMALLEA-----HCVPTEDTYALLLRAYCNS 213

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
             + +   +  E+ ++ L P    YN  +D   K    ++   V  RMK  +C+ +  T+
Sbjct: 214 GQLHRAEGVISEMQKNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETY 273

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
            L+I+ YGK +      +VF  +     KP + T+ +++  + +  L  KAE VF++M  
Sbjct: 274 TLMINVYGKAKQPMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQ 333

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
             + P    Y  ++  Y        A EIF  +  +G +   ++ N +++AY   GL  E
Sbjct: 334 AGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQE 393

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           A+  F+     G+ P   ++ LL  A+ K+      ++++ ++ ++G+ P+  F L A+
Sbjct: 394 AEAAFQELKQQGMRPTMKSHMLLLSAHAKSGNVARCEEVMAQLHKSGLRPDT-FALNAM 451



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 3/174 (1%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALGYFQ 74
           L++   K G       + +++  SG RPD    NA++ A+      D  + L  A+    
Sbjct: 416 LLSAHAKSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLLGAMERGG 475

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
                    P+  TYN+L+    +A  +D++ A F+ L    LA D+ T+   + AY + 
Sbjct: 476 DDDAGGGAAPDTSTYNVLVNVYGRAGYLDRMEAAFRALAARGLAADVVTWTSRIGAYARK 535

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
                   +   M    C PD  T  +L+ +    +  +++  + +S MH   K
Sbjct: 536 KEYGRCLEIFEEMVDAGCYPDAGTAKVLLAACSDERQVEQVTAIVRS-MHKDAK 588


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 161/318 (50%), Gaps = 15/318 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSG--CRPDPSVYNALITAHLHTRDKAKALAKALG 71
           Y  LI  + K G+T+ A+ L    RN G   +PD  +YN +I        K K +  A  
Sbjct: 301 YGTLINGLCKVGETKAALELLR--RNDGKLVQPDVVMYNTIIDGMC----KDKHVNDAFD 354

Query: 72  YFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
            + + K  +R  P++ TYN L+   C   +  D ++ LF ++    + PD+YT++ ++D 
Sbjct: 355 LYSE-KVSKRIFPDVFTYNALISGFCIVGKLKDAID-LFNKMTSKNIIPDVYTFSILVDG 412

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K+G IKE ++VL+ M     KPD++T++ L+D Y      +K E +F ++ H      
Sbjct: 413 FCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTAN 472

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREI 248
           + ++N MI  + K ++  +A  +F++M   +  P  ITY  +I   G C +  +S A E+
Sbjct: 473 VQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLID--GLCKSGRISYALEL 530

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            DE+   G+   + T N++L+A C      +A  L       G+ PD +TY +L K   +
Sbjct: 531 VDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQ 590

Query: 309 ANMKELVQKLLKRMEQNG 326
           +   E  +K+ + +   G
Sbjct: 591 SGKLEDARKVFEDLLVKG 608



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 157/357 (43%), Gaps = 46/357 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ +I  M K      A  L+SE  +    PD   YNALI+           L  A
Sbjct: 332 DVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFC----IVGKLKDA 387

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +  F KM   +   P++ T++IL+    +  N+ +   +   + +  + PD+ TY+ +MD
Sbjct: 388 IDLFNKMTS-KNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMD 446

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y     + + ES+ + M       ++ ++N++I+ + K +  D+  ++FK + H +  P
Sbjct: 447 GYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFP 506

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY---TPSFITYECI-------------- 232
            + T++S+I    K+   G+  Y  + +  M Y    P  ITY  I              
Sbjct: 507 DVITYSSLIDGLCKS---GRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAI 563

Query: 233 -------------------ITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
                              I + G C +  +  AR++F++L   G ++ V     M++ +
Sbjct: 564 TLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGF 623

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           C  GL  EA  L       G  PD+ TY+++  +  + +  ++ +KLL+ M   G++
Sbjct: 624 CDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMRGLL 680



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 146/324 (45%), Gaps = 5/324 (1%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  DT   +  I     KGQ   A+    ++   G   D   Y  LI   L    + KA 
Sbjct: 259 YEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLING-LCKVGETKA- 316

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             AL   ++  G +  +P++V YN ++    + ++V+    L+ E     + PD++TYN 
Sbjct: 317 --ALELLRRNDG-KLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNA 373

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  +   G +K+   + ++M S    PD+ TF++L+D + K     + + V   +M   
Sbjct: 374 LISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQS 433

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            KP + T++S++  Y       KAE +F  M+    T +  +Y  +I  +     V  A 
Sbjct: 434 IKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAM 493

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           ++F E+        V T +++++  C +G  + A  L +  H  G  PD  TY  +  A 
Sbjct: 494 KLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDAL 553

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K +  +    LL +++  GI P+
Sbjct: 554 CKKHHVDKAITLLTKLKGQGIRPD 577


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
          Length = 1113

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 150/306 (49%), Gaps = 5/306 (1%)

Query: 29   LAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88
            +A  LF+EM+N+GC PD   YN L+ AH     K+  + +    +++M     CKPN +T
Sbjct: 808  MAWNLFTEMKNAGCAPDVFTYNLLLDAH----GKSGKINELFELYEQMI-CSSCKPNTIT 862

Query: 89   YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
            +NI++    ++ ++D+   LF +L     +P   TY  ++D   K+G ++E + +   M 
Sbjct: 863  HNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMV 922

Query: 149  SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
               C+P+   +N+LI+ +GK    +   ++FK ++    +P L ++ S++    +A    
Sbjct: 923  DYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVD 982

Query: 209  KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
             A + F+K+         I Y  +I   G    +  A  ++DE+   G +  + T N+++
Sbjct: 983  DALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLI 1042

Query: 269  EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
                + G+  +A  L+E    +G+ P+  TY  L + Y+ +   +    + KRM   G  
Sbjct: 1043 LNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCS 1102

Query: 329  PNKRFF 334
            PN   F
Sbjct: 1103 PNTGTF 1108



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 145/307 (47%), Gaps = 5/307 (1%)

Query: 24  KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK 83
           +G  R   + F +MR +G   +   YN LI    H   ++    +AL  +++M  +E  K
Sbjct: 172 RGGLRQTPFAFGKMREAGFHLNAYSYNGLI----HLLLQSGLCREALEMYRRMV-LEGLK 226

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P++ T++ L+ A  + R+ + V +L +E+    L P+IYTY   +   G+ G I E   +
Sbjct: 227 PSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRI 286

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           + RM+ + C PD++T+ +LID+       D   ++F  +  S  KP   T+ +M+  +  
Sbjct: 287 MKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSD 346

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
               G+ +  + +M A  Y P  IT+  ++       N+  A  + D + K G    + T
Sbjct: 347 CGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHT 406

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N ++          +A  LF N   +GV P + TY L    Y K+   +   +  ++M+
Sbjct: 407 YNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMK 466

Query: 324 QNGIVPN 330
             GI PN
Sbjct: 467 IRGIAPN 473



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 145/317 (45%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +S L+   GK+  T     L  EM + G +P+   Y    T  +    +A  + +A    
Sbjct: 232 FSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTY----TICIRVLGRAGRIDEACRIM 287

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M+  + C P++VTY +L+ A   A  +D    LF ++  S   PD  TY  ++D +  
Sbjct: 288 KRMED-DGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSD 346

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +  ++   S M+++   PD+ITF +L+++  K    D+   +   +      P L T
Sbjct: 347 CGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHT 406

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N++I    +      A  +F  M  +   P+  TY   I  YG      +A E F+++ 
Sbjct: 407 YNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMK 466

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    +   NA L +    G   EA ++F    + G+ PDS TY ++ K Y+KA   +
Sbjct: 467 IRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVD 526

Query: 314 LVQKLLKRMEQNGIVPN 330
              +LL  M +N   P+
Sbjct: 527 EAIELLSDMSENQCEPD 543



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 163/383 (42%), Gaps = 39/383 (10%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D   ++ L+  + K G    A  L   MR  G  P+   YN LI+  L       AL
Sbjct: 365 YAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDAL 424

Query: 67  A-------------------------------KALGYFQKMKGMERCKPNIVTYNILLRA 95
                                           KAL  F+KMK +    PNIV  N  L +
Sbjct: 425 DLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMK-IRGIAPNIVACNASLYS 483

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
            A+   + +   +F  L  + LAPD  TYN +M  Y K G + E   +LS M  NQC+PD
Sbjct: 484 LAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPD 543

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
           II  N LI++  K    D+  ++F  L   K  PT+ T+N++I   GK     +A  +F 
Sbjct: 544 IIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFA 603

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            MT     P+ IT+  I+      D V  A ++  +++ +     V T N ++    +  
Sbjct: 604 SMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEK 663

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR-MEQNGIVPNKRFF 334
             ++A  LF     M +TPD  T   L     K  + E   K+ +  + + G+  ++RF+
Sbjct: 664 RVSDAIWLFHQMKKM-LTPDCVTLCTLLPGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFW 722

Query: 335 LEALETFSSSLAGSQSGSAKTDL 357
            + +         +Q+G+ KT L
Sbjct: 723 EDLMGGIL-----TQAGTEKTIL 740



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 120/248 (48%)

Query: 83   KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
            KP + +YN L+       N +    LF E+  +  APD++TYN ++DA+GK+G I E+  
Sbjct: 787  KPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFE 846

Query: 143  VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
            +  +M  + CKP+ IT N++I +  K  + DK   +F  L+     PT  T+  ++    
Sbjct: 847  LYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLL 906

Query: 203  KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
            K+    +A+ +F++M      P+   Y  +I  +G   +V+ A E+F  + + G    + 
Sbjct: 907  KSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLK 966

Query: 263  TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
            +  +++   C  G   +A   FE     G+  DS  Y L+     +++  E    L   M
Sbjct: 967  SYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEM 1026

Query: 323  EQNGIVPN 330
            +  GI P+
Sbjct: 1027 QSRGINPD 1034



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 143/355 (40%), Gaps = 38/355 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+  I V+G+ G+   A  +   M + GC PD   Y  LI A       A  L  A+  F
Sbjct: 267 YTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALC----TAGKLDDAMELF 322

Query: 74  QKMKG----------------------MERCK------------PNIVTYNILLRACAQA 99
            KMK                       + R K            P+++T+ IL+ A  +A
Sbjct: 323 VKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKA 382

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
            N+D+   L   + +  + P+++TYN ++    +   + +   + + M++    P   T+
Sbjct: 383 GNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTY 442

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
            L ID YGK    DK  + F+ +      P +   N+ + +  +     +A+ +F ++ +
Sbjct: 443 ILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKS 502

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
               P  +TY  ++  Y     V  A E+  ++S+   +  +  +N+++      G   E
Sbjct: 503 NGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDE 562

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           A  +F    +M + P   TY  L     K    +   +L   M  NG  PN   F
Sbjct: 563 AWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITF 617



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 125/305 (40%), Gaps = 46/305 (15%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
            +SEM   G  PD   +  L+ A      KA  + +A      M+  +   PN+ TYN L
Sbjct: 356 FWSEMEADGYAPDVITFTILVNALC----KAGNIDEAFHLLDVMR-KQGVLPNLHTYNTL 410

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN------------------ 134
           +    +   +D    LF  +    + P  YTY   +D YGK+                  
Sbjct: 411 ISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGI 470

Query: 135 -----------------GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
                            G ++E + + +R+KSN   PD +T+N+++  Y K    D+  +
Sbjct: 471 APNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIE 530

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           +   +  ++ +P +   NS+I    KA    +A  +F ++  MK  P+ +TY  +I   G
Sbjct: 531 LLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLG 590

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH---NMGVTP 294
               V RA E+F  ++  G      T N +L+  C N    E DL  +  +    M   P
Sbjct: 591 KEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKN---DEVDLALKMLYKMTTMNCMP 647

Query: 295 DSSTY 299
           D  T+
Sbjct: 648 DVLTF 652



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 114/260 (43%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           N  +YN L+    Q+    +   +++ +    L P + T++ +M A GK    + ++S+L
Sbjct: 193 NAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLL 252

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             M+S   KP+I T+ + I   G+    D+  ++ K +      P + T+  +I     A
Sbjct: 253 EEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTA 312

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
                A  +F KM A  + P  +TY  ++  +  C ++ R +E + E+   G    V T 
Sbjct: 313 GKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITF 372

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
             ++ A C  G   EA  L +     GV P+  TY  L     + N  +    L   ME 
Sbjct: 373 TILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMET 432

Query: 325 NGIVPNKRFFLEALETFSSS 344
            G+VP    ++  ++ +  S
Sbjct: 433 LGVVPTAYTYILFIDFYGKS 452



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 9/124 (7%)

Query: 3    KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
            KQ     D+  Y+ +I  +G+  +   A+ L+ EM++ G  PD   YN+LI         
Sbjct: 992  KQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLIL----NLGV 1047

Query: 63   AKALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            A  + +A   +++++  G+E   PN+ TYN L+R  + + N D   A++K +     +P+
Sbjct: 1048 AGMVEQAGKLYEELQFIGLE---PNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPN 1104

Query: 121  IYTY 124
              T+
Sbjct: 1105 TGTF 1108


>gi|242050640|ref|XP_002463064.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
 gi|241926441|gb|EER99585.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
          Length = 558

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 150/334 (44%), Gaps = 11/334 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+ Q  Y A   IY  +I +  +  Q   A  LF EM+   C+PD   YN+LI AH    
Sbjct: 143 MKIQENYCARNDIYGMMIRLHARHNQVDQARGLFFEMQEWRCKPDTDTYNSLIHAHARAG 202

Query: 61  DKAKALAKALGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
               A+         M  M+R    P+  TYN ++ AC  A N  +   L K++ E+ + 
Sbjct: 203 QWRWAI-------NIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTENGVG 255

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD+ T+N V+ A+       +  +    MKS++  PD  T N++I    K   + +  ++
Sbjct: 256 PDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKVALYGEAIEL 315

Query: 179 FKSLMHSKE--KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           F S+   +    P + T+ S++ +Y         + VF  M A    P+ ++Y  ++  Y
Sbjct: 316 FNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDMMVAEGVRPNIVSYNALLGAY 375

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                 + A E F  L + G    + +  ++L AY  + LP +A  +F         P+ 
Sbjct: 376 ASHGMHTEALETFKLLKQNGFKPDIVSYTSLLNAYGRSALPEKAREVFNEMRKNACKPNK 435

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +Y  L  AY  A M +    LL  MEQ+GI P+
Sbjct: 436 VSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPD 469



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 153/333 (45%), Gaps = 12/333 (3%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMR---NSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           LI  +   G  + A+ +F  M+   N   R D  +Y  +I   LH R     + +A G F
Sbjct: 123 LIREITISGSLKHAVHVFRWMKIQENYCARND--IYGMMI--RLHARHNQ--VDQARGLF 176

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+   RCKP+  TYN L+ A A+A        +  ++  + + P   TYN V++A G 
Sbjct: 177 FEMQEW-RCKPDTDTYNSLIHAHARAGQWRWAINIMDDMQRAAIPPSRTTYNNVINACGA 235

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G  K+   +  +M  N   PD+IT N+++ ++     + K    F+ +  SK  P   T
Sbjct: 236 AGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCT 295

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYT--PSFITYECIITMYGYCDNVSRAREIFDE 251
            N +I    K  L G+A  +F  M   +    P  +TY  I+  Y  C      + +FD 
Sbjct: 296 MNIVIHCLVKVALYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDM 355

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G    + + NA+L AY  +G+ TEA   F+     G  PD  +Y  L  AY ++ +
Sbjct: 356 MVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGFKPDIVSYTSLLNAYGRSAL 415

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            E  +++   M +N   PNK  +   ++ + S+
Sbjct: 416 PEKAREVFNEMRKNACKPNKVSYNALIDAYGSA 448



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 144/332 (43%), Gaps = 35/332 (10%)

Query: 2   QKQRWYI-ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           + Q W    DT  Y+ LI    + GQ R A+ +  +M+ +   P  + YN +I A     
Sbjct: 178 EMQEWRCKPDTDTYNSLIHAHARAGQWRWAINIMDDMQRAAIPPSRTTYNNVINACGAAG 237

Query: 61  DKAKAL-------------------------------AKALGYFQKMKGMERCKPNIVTY 89
           +  KAL                               +KA+ YF+ MK   +  P+  T 
Sbjct: 238 NWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKS-SKVAPDTCTM 296

Query: 90  NILLRACAQARNVDQVNALFKELHE--SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           NI++    +     +   LF  + E  +I  PD+ TY  +M +Y   G  +  ++V   M
Sbjct: 297 NIVIHCLVKVALYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDMM 356

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
            +   +P+I+++N L+ +Y       +  + FK L  +  KP + ++ S++  YG++ L 
Sbjct: 357 VAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGFKPDIVSYTSLLNAYGRSALP 416

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            KA  VF +M      P+ ++Y  +I  YG    +  A  +  E+ + G    V +++ +
Sbjct: 417 EKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTL 476

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           L A      PT+  ++   + + G+  ++  Y
Sbjct: 477 LTACGRCRQPTKIGIILAAAKSRGIQLNTVAY 508



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 126/281 (44%), Gaps = 15/281 (5%)

Query: 34  FSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER---CKPNIVTYN 90
           F  M++S   PD    N +I    H   K     +A+  F  M+  ER   C P++VTY 
Sbjct: 281 FEIMKSSKVAPDTCTMNIVI----HCLVKVALYGEAIELFNSMR--ERRTICPPDVVTYT 334

Query: 91  ILL---RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
            ++     C QA N     A+F  +    + P+I +YN ++ AY  +GM  E       +
Sbjct: 335 SIMYSYSVCGQAEN---CKAVFDMMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLL 391

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           K N  KPDI+++  L+++YG+    +K  +VF  +  +  KP   ++N++I  YG A + 
Sbjct: 392 KQNGFKPDIVSYTSLLNAYGRSALPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGML 451

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            +A  +  +M      P  I+   ++T  G C   ++   I       G  +     N+ 
Sbjct: 452 KEAISLLHEMEQDGIQPDVISISTLLTACGRCRQPTKIGIILAAAKSRGIQLNTVAYNSG 511

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           + +Y   G   +A  L+ +     V PD+ TY +L     K
Sbjct: 512 IGSYLSLGDYKKALELYTSMRTGNVKPDAVTYNILISGSCK 552



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 112/250 (44%), Gaps = 11/250 (4%)

Query: 30  AMWLFSEMRN--SGCRPDPSVYNALITAH--LHTRDKAKALAKALGYFQKMKGMERCKPN 85
           A+ LF+ MR   + C PD   Y +++ ++      +  KA+      F  M   E  +PN
Sbjct: 312 AIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAV------FDMMVA-EGVRPN 364

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           IV+YN LL A A      +    FK L ++   PDI +Y  +++AYG++ + ++   V +
Sbjct: 365 IVSYNALLGAYASHGMHTEALETFKLLKQNGFKPDIVSYTSLLNAYGRSALPEKAREVFN 424

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
            M+ N CKP+ +++N LID+YG      +   +   +     +P + + ++++   G+ R
Sbjct: 425 EMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCR 484

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
              K   +     +     + + Y   I  Y    +  +A E++  +          T N
Sbjct: 485 QPTKIGIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALELYTSMRTGNVKPDAVTYN 544

Query: 266 AMLEAYCMNG 275
            ++   C  G
Sbjct: 545 ILISGSCKLG 554



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 5/172 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ  +  D   Y+ L+   G+      A  +F+EMR + C+P+   YNALI A+      
Sbjct: 392 KQNGFKPDIVSYTSLLNAYGRSALPEKAREVFNEMRKNACKPNKVSYNALIDAY----GS 447

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A  L +A+    +M+  +  +P++++ + LL AC + R   ++  +        +  +  
Sbjct: 448 AGMLKEAISLLHEME-QDGIQPDVISISTLLTACGRCRQPTKIGIILAAAKSRGIQLNTV 506

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
            YN  + +Y   G  K+   + + M++   KPD +T+N+LI    K  +F K
Sbjct: 507 AYNSGIGSYLSLGDYKKALELYTSMRTGNVKPDAVTYNILISGSCKLGSFRK 558


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 154/335 (45%), Gaps = 9/335 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  Y+ L+    +      A  +F EM + G  PD   ++ALI        K   L +A
Sbjct: 201 DTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALI----GLLSKNGCLDQA 256

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L YF+ MK      P+ V Y IL+    +   + +   +  E+ E     D+ TYN +++
Sbjct: 257 LKYFRDMKN-AGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILN 315

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K  M+ E + + + M      PD  TF  LI+ Y K    +K   +F+ ++    KP
Sbjct: 316 GLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKP 375

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRARE 247
            + T+N++I  + K     K   ++  M + +  P+ I+Y  +I   GYC+   VS A  
Sbjct: 376 DVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILIN--GYCNMGCVSEAFR 433

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           ++DE+ + G +  + T N +++ YC  G   +AD    N    G+ PD  TY  L   + 
Sbjct: 434 LWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFI 493

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           K    +    L+ +ME +G++P+   +   L  FS
Sbjct: 494 KEENMDRAFALVNKMENSGLLPDVITYNVILNGFS 528



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 164/363 (45%), Gaps = 44/363 (12%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   +S LI ++ K G    A+  F +M+N+G  PD  +Y  LI        +   ++
Sbjct: 234 VPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFC----RNGVMS 289

Query: 68  KALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +AL    +M  +E+ C  ++VTYN +L    + + + + + LF E+ E  + PD YT+  
Sbjct: 290 EALKVRDEM--LEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTT 347

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++ Y K+G + +  ++   M     KPD++T+N LID + K    +K+ +++  ++  +
Sbjct: 348 LINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRR 407

Query: 187 EKP-----------------------------------TLPTFNSMIINYGKARLQGKAE 211
             P                                   T+ T N+++  Y +A    KA+
Sbjct: 408 IYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKAD 467

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
                M      P  ITY  +I  +   +N+ RA  + +++   G    V T N +L  +
Sbjct: 468 EFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGF 527

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKRMEQNGIVPN 330
              G   EA+L+       GV PD STY  L   + T+ N+KE   ++   M Q G VP+
Sbjct: 528 SRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAF-RVHDEMLQRGFVPD 586

Query: 331 KRF 333
            +F
Sbjct: 587 DKF 589



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 142/321 (44%), Gaps = 15/321 (4%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           + L+  + K G   LA  ++ E+  SG + +    N +I A      K + +     +  
Sbjct: 66  NSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALC----KNQKIENTKSFLS 121

Query: 75  KM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            M  KG+    P++VTYN L+ A  +   +++   L   +    L P ++TYN +++   
Sbjct: 122 DMEEKGV---FPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLC 178

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G     + VL  M      PD  T+N+L+    +       E++F  +      P L 
Sbjct: 179 KTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLV 238

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFD 250
           +F+++I    K     +A   F+ M      P  + Y  +I   G+C N  +S A ++ D
Sbjct: 239 SFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIG--GFCRNGVMSEALKVRD 296

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-A 309
           E+ + G  + V T N +L   C   + +EAD LF      GV PD  T+  L   Y+K  
Sbjct: 297 EMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDG 356

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
           NM + V  L + M Q  + P+
Sbjct: 357 NMNKAVT-LFEMMIQRNLKPD 376



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 107/253 (42%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C  N + +++L+R   QAR + +    F+ L    L   I   N ++    K G +    
Sbjct: 23  CGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAW 82

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
            +   +  +  + ++ T N++I++  K Q  +  +     +      P + T+N++I  Y
Sbjct: 83  EIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAY 142

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            +  L  +A  +   M+     P   TY  II          RA+ + DE+ K+G     
Sbjct: 143 CRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDT 202

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
           +T N +L   C N    +A+ +F+   + GV PD  ++  L    +K    +   K  + 
Sbjct: 203 ATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRD 262

Query: 322 MEQNGIVPNKRFF 334
           M+  G+ P+   +
Sbjct: 263 MKNAGLAPDNVIY 275


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 154/335 (45%), Gaps = 9/335 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  Y+ L+    +      A  +F EM + G  PD   ++ALI        K   L +A
Sbjct: 358 DTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALI----GLLSKNGCLDQA 413

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L YF+ MK      P+ V Y IL+    +   + +   +  E+ E     D+ TYN +++
Sbjct: 414 LKYFRDMKN-AGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILN 472

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K  M+ E + + + M      PD  TF  LI+ Y K    +K   +F+ ++    KP
Sbjct: 473 GLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKP 532

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRARE 247
            + T+N++I  + K     K   ++  M + +  P+ I+Y  +I   GYC+   VS A  
Sbjct: 533 DVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILIN--GYCNMGCVSEAFR 590

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           ++DE+ + G +  + T N +++ YC  G   +AD    N    G+ PD  TY  L   + 
Sbjct: 591 LWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFI 650

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           K    +    L+ +ME +G++P+   +   L  FS
Sbjct: 651 KEENMDRAFALVNKMENSGLLPDVITYNVILNGFS 685



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 164/363 (45%), Gaps = 44/363 (12%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   +S LI ++ K G    A+  F +M+N+G  PD  +Y  LI        +   ++
Sbjct: 391 VPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFC----RNGVMS 446

Query: 68  KALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +AL    +M  +E+ C  ++VTYN +L    + + + + + LF E+ E  + PD YT+  
Sbjct: 447 EALKVRDEM--LEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTT 504

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++ Y K+G + +  ++   M     KPD++T+N LID + K    +K+ +++  ++  +
Sbjct: 505 LINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRR 564

Query: 187 EKP-----------------------------------TLPTFNSMIINYGKARLQGKAE 211
             P                                   T+ T N+++  Y +A    KA+
Sbjct: 565 IYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKAD 624

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
                M      P  ITY  +I  +   +N+ RA  + +++   G    V T N +L  +
Sbjct: 625 EFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGF 684

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKRMEQNGIVPN 330
              G   EA+L+       GV PD STY  L   + T+ N+KE   ++   M Q G VP+
Sbjct: 685 SRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAF-RVHDEMLQRGFVPD 743

Query: 331 KRF 333
            +F
Sbjct: 744 DKF 746



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 142/321 (44%), Gaps = 15/321 (4%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           + L+  + K G   LA  ++ E+  SG + +    N +I A      K + +     +  
Sbjct: 223 NSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALC----KNQKIENTKSFLS 278

Query: 75  KM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            M  KG+    P++VTYN L+ A  +   +++   L   +    L P ++TYN +++   
Sbjct: 279 DMEEKGV---FPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLC 335

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G     + VL  M      PD  T+N+L+    +       E++F  +      P L 
Sbjct: 336 KTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLV 395

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFD 250
           +F+++I    K     +A   F+ M      P  + Y  +I   G+C N  +S A ++ D
Sbjct: 396 SFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIG--GFCRNGVMSEALKVRD 453

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-A 309
           E+ + G  + V T N +L   C   + +EAD LF      GV PD  T+  L   Y+K  
Sbjct: 454 EMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDG 513

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
           NM + V  L + M Q  + P+
Sbjct: 514 NMNKAV-TLFEMMIQRNLKPD 533



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 107/253 (42%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C  N + +++L+R   QAR + +    F+ L    L   I   N ++    K G +    
Sbjct: 180 CGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAW 239

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
            +   +  +  + ++ T N++I++  K Q  +  +     +      P + T+N++I  Y
Sbjct: 240 EIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAY 299

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            +  L  +A  +   M+     P   TY  II          RA+ + DE+ K+G     
Sbjct: 300 CRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDT 359

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
           +T N +L   C N    +A+ +F+   + GV PD  ++  L    +K    +   K  + 
Sbjct: 360 ATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRD 419

Query: 322 MEQNGIVPNKRFF 334
           M+  G+ P+   +
Sbjct: 420 MKNAGLAPDNVIY 432


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 162/327 (49%), Gaps = 15/327 (4%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---HLHTRDKAKA 65
           A+  IYS +I  + K      A+ LF+EM N G RP+   Y++LI+    +    D ++ 
Sbjct: 258 ANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRL 317

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L+  +          +  PN+VT+N L+ A  +   + +   L+ E+ +  + PDI+TY+
Sbjct: 318 LSDMIE--------RKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 369

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++ +  +  + E + +   M S  C P+++T+N LI+ + K +  D+  ++F+ +   
Sbjct: 370 SLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQR 429

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VS 243
                  T+ ++I  + +AR    A+ VF++M +    P+ +TY  ++   G C N  + 
Sbjct: 430 GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLD--GLCKNGKLE 487

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           +A  +F+ L +   +  + T N M+E  C  G   +   LF +    GV PD   Y  + 
Sbjct: 488 KAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMI 547

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
             + +  +KE    L ++M ++G +P+
Sbjct: 548 SGFCRKGLKEEADALFRKMREDGPLPD 574



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 143/304 (47%), Gaps = 11/304 (3%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CKPNIVT 88
           A+ L  +M   G RPD   +  LI   L   +KA   ++A+    +M  ++R C+PN+VT
Sbjct: 174 AVALVDQMVEMGYRPDTITFTTLIHG-LFLHNKA---SEAVALVDRM--VQRGCQPNLVT 227

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y +++    +  ++D    L  ++  + +  ++  Y+ V+D+  K     +  ++ + M+
Sbjct: 228 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEME 287

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           +   +P++IT++ LI      + +    ++   ++  K  P + TFN++I  + K     
Sbjct: 288 NKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLV 347

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNA 266
           +AE ++ +M      P   TY  +I  +   D +  A+ +F+ +  + KD    V T N 
Sbjct: 348 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM--ISKDCFPNVVTYNT 405

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           ++  +C      E   LF      G+  ++ TY  L   + +A   +  Q + K+M  +G
Sbjct: 406 LINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDG 465

Query: 327 IVPN 330
           + PN
Sbjct: 466 VHPN 469



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/323 (20%), Positives = 142/323 (43%), Gaps = 5/323 (1%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  DT  ++ LI  +    +   A+ L   M   GC+P+   Y  ++       D    +
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD----I 241

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             A     KM+   + + N+V Y+ ++ +  + R+ D    LF E+    + P++ TY+ 
Sbjct: 242 DLAFNLLNKMEA-AKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSS 300

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++          +   +LS M   +  P+++TFN LID++ K     + E+++  ++   
Sbjct: 301 LISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRS 360

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P + T++S+I  +       +A+++F+ M +    P+ +TY  +I  +     +    
Sbjct: 361 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGV 420

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+F E+S+ G      T   ++  +        A ++F+   + GV P+  TY  L    
Sbjct: 421 ELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGL 480

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            K    E    + + ++++ + P
Sbjct: 481 CKNGKLEKAMVVFEYLQRSKMEP 503



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 149/363 (41%), Gaps = 40/363 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++KL++ + K  +  L + L  +M+  G   +   YN LI         + ALA  LG  
Sbjct: 88  FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA-LLGKM 146

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+ G E   P+IVT + LL      + +    AL  ++ E    PD  T+  ++     
Sbjct: 147 MKL-GYE---PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD-------KME---------- 176
           +    E  +++ RM    C+P+++T+ ++++   KR   D       KME          
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVI 262

Query: 177 ------------------QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
                              +F  + +   +P + T++S+I           A  +   M 
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMI 322

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
             K  P+ +T+  +I  +     +  A +++DE+ K   D  + T ++++  +CM+    
Sbjct: 323 ERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 382

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           EA  +FE   +    P+  TY  L   + KA   +   +L + M Q G+V N   +   +
Sbjct: 383 EAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLI 442

Query: 339 ETF 341
             F
Sbjct: 443 HGF 445



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 124/295 (42%), Gaps = 9/295 (3%)

Query: 49  YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL 108
           Y  ++   LH+      L  A+G F  M    R  P+I  +N LL A A+ +  D V +L
Sbjct: 53  YREILRNGLHSM----KLDDAIGLFGGMVK-SRPLPSIFEFNKLLSAIAKMKKFDLVISL 107

Query: 109 FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
            +++    ++ ++YTYN +++ + +   I    ++L +M     +P I+T + L++ Y  
Sbjct: 108 GEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCH 167

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
            +       +   ++    +P   TF ++I          +A  +  +M      P+ +T
Sbjct: 168 GKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVT 227

Query: 229 YECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           Y  ++   G C   ++  A  + +++     +  V   + ++++ C      +A  LF  
Sbjct: 228 YGVVVN--GLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTE 285

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
             N GV P+  TY  L              +LL  M +  I PN   F   ++ F
Sbjct: 286 MENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAF 340


>gi|297724361|ref|NP_001174544.1| Os05g0583900 [Oryza sativa Japonica Group]
 gi|42491383|gb|AAS16889.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|255676609|dbj|BAH93272.1| Os05g0583900 [Oryza sativa Japonica Group]
          Length = 467

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 148/323 (45%), Gaps = 9/323 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D    + L+    K G    A  +F EM   G  P+   Y AL+  +     + K  A  
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFA-- 94

Query: 70  LGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F++M+  G+E   PN+ TYN L+    +    ++  +LF E+    +  ++ +YN +
Sbjct: 95  --LFEEMRRGGVE---PNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTL 149

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +    ++G + +   +L  M++   +P IITFNLL+D YGK          F  +  +  
Sbjct: 150 IAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGF 209

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P+  T+N +I  + +AR   +A      M      P+ +TY  +I  +   +++ +A E
Sbjct: 210 QPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFE 269

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           I   + K G ++   T   ++ A CM G   +A  LF++    GV P +  Y ++   Y 
Sbjct: 270 ILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYG 329

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           +        KL+  M Q G++PN
Sbjct: 330 REGSSYKALKLIMEMRQKGLIPN 352



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 111/242 (45%), Gaps = 5/242 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LIA + + G+   A  L   MR  G RP    +N L+  +     KA  ++ AL +F
Sbjct: 146 YNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGY----GKAGKMSNALPFF 201

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +MK     +P+ VTYN+L+    +AR++ + N    ++ E  L P   TY  ++D++ +
Sbjct: 202 NQMKAAG-FQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFAR 260

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              + +   +L+ M+    + D  T+ +L+ +           ++F+S+     +P+   
Sbjct: 261 ENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVI 320

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           ++ MI  YG+     KA  +  +M      P+  +Y   I +    D    A  + D++ 
Sbjct: 321 YDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDME 380

Query: 254 KL 255
            +
Sbjct: 381 TI 382



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/258 (18%), Positives = 101/258 (39%), Gaps = 35/258 (13%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           ++     L+  C +  +V +   +F E+    LAP+  TY  +M  Y  +G  ++  ++ 
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALF 96

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             M+    +P++ T+N LI  + +   F++   +F  +        + ++N++I    + 
Sbjct: 97  EEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRH 156

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
                A  +   M      PS IT+  ++  YG    +S A   F++       MK +  
Sbjct: 157 GKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQ-------MKAA-- 207

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
                                     G  P + TY +L   + +A       + L  M++
Sbjct: 208 --------------------------GFQPSAVTYNMLIAGFCRARDMTRANRALSDMKE 241

Query: 325 NGIVPNKRFFLEALETFS 342
            G+ P K  +   +++F+
Sbjct: 242 RGLEPTKVTYTILIDSFA 259



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 91/232 (39%), Gaps = 8/232 (3%)

Query: 135 GMIKEMESVLSR-MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           G ++   ++L+R  KS     D+     L++   K     +  +VF  +      P   T
Sbjct: 16  GDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVT 75

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + +++  Y     + K   +F++M      P+  TY C+I  +       RAR +FDE+ 
Sbjct: 76  YTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMP 135

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V + N ++   C +G   +A  L +     G  P   T+ LL   Y KA    
Sbjct: 136 VRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMS 195

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRSLSTAK 365
                  +M+  G  P+         T++  +AG       T   R+LS  K
Sbjct: 196 NALPFFNQMKAAGFQPSA-------VTYNMLIAGFCRARDMTRANRALSDMK 240


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 152/328 (46%), Gaps = 7/328 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++  I     Y+ LI    KKG +  A+ + S M ++ C P+   YN LI        + 
Sbjct: 372 EKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFC----RG 427

Query: 64  KALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           K + KA+    KM  +ER  +PN+VTYNIL+    +  ++     L   ++ES L PD +
Sbjct: 428 KNIHKAMSLLHKM--LERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEW 485

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY+  +D   K G+++E  S+   +K    K + + ++ LID Y K         +   +
Sbjct: 486 TYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKM 545

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           + +   P   T+NS+I  Y K +   +A  +   M      P+  TY  +I      D  
Sbjct: 546 LSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEF 605

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A ++FD++   G    V    A + AYC +G   +A++L    +  G+ PD+  Y L 
Sbjct: 606 DQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLF 665

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
             AY +    +    +LKRM + G  P+
Sbjct: 666 IDAYGRFGSIDGAFGILKRMHEVGCEPS 693



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 137/312 (43%), Gaps = 9/312 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    +  +   A+ LFS+M    C P    Y  +I A      K +AL      F
Sbjct: 277 YTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEAL----NMF 332

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M   + C+PN+ TY +L+ +  +  N D    +   + E  L P + TYN ++D Y K
Sbjct: 333 KEMTE-KHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCK 391

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G+      +LS M+SN C P+  T+N LI  + + +   K   +   ++  K +P + T
Sbjct: 392 KGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVT 451

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N +I    K    G A  +   M      P   TY   I        V  AR +F+ L 
Sbjct: 452 YNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLK 511

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA-NMK 312
           + G        + +++ YC  G  ++   L +   + G  P+S TY  L   Y K  N K
Sbjct: 512 EKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFK 571

Query: 313 E---LVQKLLKR 321
           E   LV  ++KR
Sbjct: 572 EARLLVDIMIKR 583



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 136/312 (43%), Gaps = 5/312 (1%)

Query: 23  KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82
           K G    A    S++  +G   D   Y +LI  +   R+K    A A+      KG   C
Sbjct: 216 KLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGY--CRNKNVDAANAIFLSMPNKG---C 270

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
             N V+Y  L+    +AR VD+   LF ++HE    P + TY  ++ A  + G   E  +
Sbjct: 271 LRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALN 330

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +   M    C+P++ T+ +LI S  +   FD  +++   ++     P++ T+N++I  Y 
Sbjct: 331 MFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYC 390

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           K  L   A  +   M +   +P+  TY  +I  +    N+ +A  +  ++ +      V 
Sbjct: 391 KKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVV 450

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T N ++   C  G    A  L    +  G+ PD  TY +      K  + E  + L + +
Sbjct: 451 TYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESL 510

Query: 323 EQNGIVPNKRFF 334
           ++ GI  N+  +
Sbjct: 511 KEKGIKANEVIY 522



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 141/333 (42%), Gaps = 42/333 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K++   A+  IYS LI    K G+     +L  +M ++GC P+   YN+LI    + ++K
Sbjct: 511 KEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDG--YCKEK 568

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
               A+ L      + +E   P   TY IL+    +    DQ + +F ++  +   PD++
Sbjct: 569 NFKEARLLVDIMIKRDIE---PAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVF 625

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            Y   + AY  +G +K+ E ++ +M +    PD + + L ID+YG+  + D    + K +
Sbjct: 626 IYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRM 685

Query: 183 MHSKEKPTLPTFNSMIINYGKAR------------------------LQGKAEY-----V 213
                +P+  T++ +I +   A+                           + +Y     +
Sbjct: 686 HEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDL 745

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F KM      P+  TY   IT       +  A  +FD + + G+       N++L   C 
Sbjct: 746 FGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQ 805

Query: 274 NGLPTEA----DLLFENSHNMGVTPDSSTYKLL 302
            GL  EA    D++ EN H     P   + KLL
Sbjct: 806 LGLYGEAIRWLDIMIENRH----LPHLDSCKLL 834



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 115/259 (44%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           K  +  YN+LL   ++   +D++ +++ E+ + ++ P+I+T N +++ Y K G + E E 
Sbjct: 166 KLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAEL 225

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
            +S++       D  T+  LI  Y + +  D    +F S+ +        ++ ++I  + 
Sbjct: 226 YVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFC 285

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           +AR   +A  +F +M      P+  TY  II         + A  +F E+++      V 
Sbjct: 286 EARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVH 345

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T   ++ + C +    +A  +       G+ P   TY  L   Y K  +     ++L  M
Sbjct: 346 TYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLM 405

Query: 323 EQNGIVPNKRFFLEALETF 341
           E N   PN R + E +  F
Sbjct: 406 ESNNCSPNARTYNELILGF 424



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 110/247 (44%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           PNI T N ++    +  NV +      ++ ++ L+ D +TY  ++  Y +N  +    ++
Sbjct: 202 PNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAI 261

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
              M +  C  + +++  LI  + + +  D+  ++F  +      PT+ T+  +I    +
Sbjct: 262 FLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQ 321

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
              + +A  +F++MT     P+  TY  +I       N   A++I + + + G    V T
Sbjct: 322 LGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVT 381

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            NA+++ YC  GL   A  +     +   +P++ TY  L   + +         LL +M 
Sbjct: 382 YNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKML 441

Query: 324 QNGIVPN 330
           +  + PN
Sbjct: 442 ERKLQPN 448



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/331 (20%), Positives = 124/331 (37%), Gaps = 44/331 (13%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL-HTRDKAKALA 67
           ADT  Y+ LI  + K  +   A  +F +M ++G  PD  +Y A I A+  H R K    A
Sbjct: 589 ADT--YTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKD---A 643

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           + L      KG+    P+ + Y + + A  +  ++D    + K +HE    P  YTY+ +
Sbjct: 644 EVLICKMNAKGI---MPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCL 700

Query: 128 MDAYGKNGMIKEME------------------------------SVLSRMKSNQCKPDII 157
           +  +  N   KE+                                +  +M  + C P+  
Sbjct: 701 I-KHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNAN 759

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           T+   I    K    +   ++F  +    + P    +NS++    +  L G+A      M
Sbjct: 760 TYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDIM 819

Query: 218 TAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
              ++ P   +  C + + G  D  N  +A+ +F    +   +        +++     G
Sbjct: 820 IENRHLPHLDS--CKLLLCGLYDEGNDEKAKRVFCSFLQCEYNYDEMVWKVLIDGLLKKG 877

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           L  +   LF      G      TY +L + +
Sbjct: 878 LSDKCSDLFGIMETQGCQIHPKTYSMLIEGF 908



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 4/197 (2%)

Query: 136 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195
           +++ + S+  R+ + + K  +  +N+L+    +    D+M+ V+  ++     P + T N
Sbjct: 149 VLEMLRSMNRRVDAFKFKLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLN 208

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELS 253
           +M+  Y K     +AE    K+     +    TY  +I   GYC   NV  A  IF  + 
Sbjct: 209 TMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLIL--GYCRNKNVDAANAIFLSMP 266

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G      +   ++  +C      EA  LF   H     P   TY ++  A  +   K 
Sbjct: 267 NKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKT 326

Query: 314 LVQKLLKRMEQNGIVPN 330
               + K M +    PN
Sbjct: 327 EALNMFKEMTEKHCQPN 343



 Score = 41.6 bits (96), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 62/147 (42%)

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
           K K TL  +N +++   +  +  + + V+ +M     TP+  T   ++  Y    NV  A
Sbjct: 164 KFKLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEA 223

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
                ++ + G  +   T  +++  YC N     A+ +F +  N G   +  +Y  L   
Sbjct: 224 ELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHG 283

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKR 332
           + +A   +   KL  +M ++   P  R
Sbjct: 284 FCEARRVDEALKLFSQMHEDNCWPTVR 310


>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
 gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 642

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 148/318 (46%), Gaps = 6/318 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  YS LI+   K G+   A+ LF EM+++  +P   +Y  L+  +     K   + KA
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYF----KVGKVEKA 287

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  F++MK    C P + TY  L++   +A  VD+    +K++    L PD+   N +M+
Sbjct: 288 LDLFEEMK-RAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMN 346

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA-FDKMEQVFKSLMHSKEK 188
             GK G ++E+ +V S M   +C P ++++N +I +  + +A   ++   F  +      
Sbjct: 347 ILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVS 406

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P+  T++ +I  Y K     KA  + ++M    + P    Y  +I   G       A E+
Sbjct: 407 PSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANEL 466

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F EL +   ++       M++ +   G  +EA  LF    N G  PD   Y  L     K
Sbjct: 467 FKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVK 526

Query: 309 ANMKELVQKLLKRMEQNG 326
           A M      LL++ME+NG
Sbjct: 527 AGMINEANSLLRKMEENG 544



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 134/315 (42%), Gaps = 5/315 (1%)

Query: 12  GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
            + S+L+  +G+      A+ +F + +   C+P  S YN++I   +      K       
Sbjct: 163 AVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHE---- 218

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            + +M     C P+ +TY+ L+ +  +    D    LF E+ ++ + P    Y  ++  Y
Sbjct: 219 VYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIY 278

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G +++   +   MK   C P + T+  LI   GK    D+    +K ++     P +
Sbjct: 279 FKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDV 338

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII-TMYGYCDNVSRAREIFD 250
              N+++   GK     +   VF +M   + TP+ ++Y  +I  ++    +VS     FD
Sbjct: 339 VFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFD 398

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           ++          T + +++ YC      +A LL E     G  P  + Y  L  A  KA 
Sbjct: 399 KMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAK 458

Query: 311 MKELVQKLLKRMEQN 325
             E   +L K +++N
Sbjct: 459 RYEAANELFKELKEN 473



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 130/295 (44%), Gaps = 7/295 (2%)

Query: 37  MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 96
           +RN+     P+V + L+ A      +AK ++KAL  F + KG  +CKP   TYN ++   
Sbjct: 153 VRNTYVSVSPAVLSELVKA----LGRAKMVSKALSVFYQAKG-RKCKPTSSTYNSVILML 207

Query: 97  AQARNVDQVNALFKEL-HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
            Q    ++V+ ++ E+ +E    PD  TY+ ++ +Y K G       +   MK N  +P 
Sbjct: 208 MQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPT 267

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
              +  L+  Y K    +K   +F+ +  +   PT+ T+  +I   GKA    +A   ++
Sbjct: 268 EKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYK 327

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA-YCMN 274
            M     TP  +    ++ + G    V     +F E+        V + N +++A +   
Sbjct: 328 DMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESK 387

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
              +E    F+      V+P   TY +L   Y K N  E    LL+ M++ G  P
Sbjct: 388 AHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPP 442



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 111/230 (48%), Gaps = 9/230 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI    K  +   A+ L  EM   G  P P+ Y +LI A      KAK    A   F
Sbjct: 412 YSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINA----LGKAKRYEAANELF 467

Query: 74  QKMKGMERCKPNIVT--YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           +++K       N+ +  Y ++++   +   + +   LF E+      PD+Y YN +M   
Sbjct: 468 KELK---ENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGM 524

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K GMI E  S+L +M+ N C+ DI + N++++ + +     +  ++F+++ HS  KP  
Sbjct: 525 VKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDG 584

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
            T+N+++  +  A +  +A  + ++M    +    ITY  I+   G  D+
Sbjct: 585 VTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNVDH 634



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 127/318 (39%), Gaps = 39/318 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D    + L+ ++GK G+      +FSEM    C P    YN +I A   ++     ++  
Sbjct: 337 DVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVS-- 394

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
             +F KMK  +   P+  TY+IL+    +   V++   L +E+ E    P    Y  +++
Sbjct: 395 -SWFDKMKA-DSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIN 452

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A GK    +    +   +K N        + ++I  +GK     +   +F  + +    P
Sbjct: 453 ALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGP 512

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  +N+++    KA +  +A  + +KM                      +N  RA    
Sbjct: 513 DVYAYNALMSGMVKAGMINEANSLLRKME---------------------ENGCRA---- 547

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
                      +++ N +L  +   G+P  A  +FE   + G+ PD  TY  L   +  A
Sbjct: 548 ----------DINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHA 597

Query: 310 NMKELVQKLLKRMEQNGI 327
            M E   ++++ M+  G 
Sbjct: 598 GMFEEAARMMREMKDKGF 615



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 83/155 (53%), Gaps = 5/155 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ +I   GK G+   A+ LF+EM+N G  PD   YNAL++  +    KA  + +A   
Sbjct: 481 VYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMV----KAGMINEANSL 536

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            +KM+    C+ +I ++NI+L   A+     +   +F+ +  S + PD  TYN ++  + 
Sbjct: 537 LRKMEE-NGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFA 595

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
             GM +E   ++  MK    + D IT++ ++D+ G
Sbjct: 596 HAGMFEEAARMMREMKDKGFEYDAITYSSILDAVG 630



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 71/177 (40%), Gaps = 7/177 (3%)

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM- 220
           L+ + G+ +   K   VF      K KPT  T+NS+I+   +   +G+ E V +  T M 
Sbjct: 168 LVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQ---EGQHEKVHEVYTEMC 224

Query: 221 ---KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
                 P  ITY  +I+ Y        A  +FDE+              +L  Y   G  
Sbjct: 225 NEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKV 284

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            +A  LFE     G +P   TY  L K   KA   +      K M ++G+ P+  F 
Sbjct: 285 EKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFL 341


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 146/319 (45%), Gaps = 5/319 (1%)

Query: 12  GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           G++  L +V+ + G    A   F  M      P     NA     LH   KA     +  
Sbjct: 63  GVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAF----LHRLSKAGEGDLSRD 118

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           +F+ M G     P + TYNI++    +  ++    +LF+++ +  L PDI TYN ++D Y
Sbjct: 119 FFRDMVG-AGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGY 177

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           GK G++ E   +   MK   C+PD+IT+N LI+S+ K +   +  + F+ +     KP +
Sbjct: 178 GKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNV 237

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            +++++I    K  +   A   F  MT +   P+  TY  +I       N+  A  + DE
Sbjct: 238 ISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADE 297

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + +   D+ + T   +L+  C  G+  EA+ LF      GVTP+   Y  L   + K   
Sbjct: 298 MLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRS 357

Query: 312 KELVQKLLKRMEQNGIVPN 330
            +   +L   M +  I P+
Sbjct: 358 MDKAMELFNEMREKDIKPD 376



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 154/357 (43%), Gaps = 40/357 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI   GK G    ++ LF EM+  GC PD   YNALI +      K K + +A
Sbjct: 166 DIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFC----KFKGMLRA 221

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
             +F++MK  +  KPN+++Y+ L+ A  +   +      F ++    L P+ +TY+ ++D
Sbjct: 222 FEFFREMKDKD-LKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLID 280

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A  K G + E   +   M       +I+T+  L+D   +    ++ E++F+++  +   P
Sbjct: 281 ANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTP 340

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY--------------ECIITM 235
            L  + ++I  + K R   KA  +F +M      P  + +              EC I M
Sbjct: 341 NLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIM 400

Query: 236 ---------------------YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
                                Y    N + A  + +E+  LG ++ V T  A+++  C  
Sbjct: 401 TEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKR 460

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           GL  EA   F    +  + P+ + Y  L     K N     +KL   M+   ++P+K
Sbjct: 461 GLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDK 517



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 139/325 (42%), Gaps = 13/325 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + ++G    A  LF  M  +G  P+   Y ALI  H+    K +++ KA+  F
Sbjct: 310 YTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHI----KVRSMDKAMELF 365

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+  +  KP+I+ +  ++        +++   +  E+ ES +  +   Y  +MDAY K
Sbjct: 366 NEMREKD-IKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFK 424

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G   E  ++L  M+    +  ++TF  LID   KR    +    F  +     +P +  
Sbjct: 425 AGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAV 484

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + ++I    K    G A+ +F +M      P  I Y  +I       N   A  + +++ 
Sbjct: 485 YTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMM 544

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS-TYKLLYKAYTKANM- 311
           ++G ++ +    +++      G   +A          G+ PD +   +LL K Y   N+ 
Sbjct: 545 EMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDETLCTRLLRKHYELGNID 604

Query: 312 ------KELVQKLLKRMEQNGIVPN 330
                  ELV+K L     N  VPN
Sbjct: 605 EAIELQNELVEKGLIHGNSNPAVPN 629



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 144/352 (40%), Gaps = 38/352 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI  + K+G  ++A+  F +M   G  P+   Y++LI A+    +  +A   A    
Sbjct: 240 YSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEML 299

Query: 74  Q------------------------------KMKGMERCKPNIVTYNILLRACAQARNVD 103
           Q                              +  G     PN+  Y  L+    + R++D
Sbjct: 300 QEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMD 359

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +   LF E+ E  + PDI  +  ++        ++E + +++ MK +    + + +  L+
Sbjct: 360 KAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLM 419

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           D+Y K     +   + + +     + T+ TF ++I    K  L  +A Y F +M      
Sbjct: 420 DAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQ 479

Query: 224 PSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTL--NAMLEAYCMNGLPTE 279
           P+   Y  +I   G C N  +  A+++FDE+    K+M    +   AM++    +G   E
Sbjct: 480 PNVAVYTALID--GLCKNNCIGDAKKLFDEMQD--KNMIPDKIAYTAMIDGNLKHGNFQE 535

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           A  +      MG+  D   Y  L    ++    +  +K L  M   GI+P++
Sbjct: 536 ALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDE 587



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 105/262 (40%), Gaps = 18/262 (6%)

Query: 88  TYNILLRACAQARNVDQVNALFKELHES------------------ILAPDIYTYNGVMD 129
           +Y IL+     AR     N + KEL  S                  +  P    ++ +  
Sbjct: 11  SYCILVHILFYARMYFHANNILKELVLSSWVLPGSDVFEILWTTRNVCVPGFGVFDALFS 70

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              + GM++       RM   +  P   + N  +    K    D     F+ ++ +   P
Sbjct: 71  VLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDMVGAGIAP 130

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           T+ T+N MI +  K      A  +F++M  M  TP  +TY  +I  YG    +  +  +F
Sbjct: 131 TVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLF 190

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +E+  +G +  V T NA++ ++C       A   F    +  + P+  +Y  L  A  K 
Sbjct: 191 EEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKE 250

Query: 310 NMKELVQKLLKRMEQNGIVPNK 331
            M ++  K    M + G++PN+
Sbjct: 251 GMMQMAIKFFVDMTRVGLLPNE 272



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 8/184 (4%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           A+  IY+ L+    K G    A+ L  EMR+ G       + ALI        K   + +
Sbjct: 410 ANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLC----KRGLVQE 465

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A+ YF +M   +  +PN+  Y  L+    +   +     LF E+ +  + PD   Y  ++
Sbjct: 466 AIYYFGRMPDHD-LQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMI 524

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D   K+G  +E  ++ ++M     + D+  +  L+  +G  Q   +++Q  K L     K
Sbjct: 525 DGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLV--WGLSQC-GQVQQARKFLAEMIGK 581

Query: 189 PTLP 192
             +P
Sbjct: 582 GIIP 585


>gi|222632709|gb|EEE64841.1| hypothetical protein OsJ_19698 [Oryza sativa Japonica Group]
          Length = 496

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 144/310 (46%), Gaps = 9/310 (2%)

Query: 23  KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMK--GME 80
           K G    A  +F EM   G  P+   Y AL+  +     + K  A     F++M+  G+E
Sbjct: 50  KGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFA----LFEEMRRGGVE 105

Query: 81  RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140
              PN+ TYN L+    +    ++  +LF E+    +  ++ +YN ++    ++G + + 
Sbjct: 106 ---PNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDA 162

Query: 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
             +L  M++   +P IITFNLL+D YGK          F  +  +  +P+  T+N +I  
Sbjct: 163 AKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAG 222

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
           + +AR   +A      M      P+ +TY  +I  +   +++ +A EI   + K G ++ 
Sbjct: 223 FCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVD 282

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
             T   ++ A CM G   +A  LF++    GV P +  Y ++   Y +        KL+ 
Sbjct: 283 AHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIM 342

Query: 321 RMEQNGIVPN 330
            M Q G++PN
Sbjct: 343 EMRQKGLIPN 352



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 111/242 (45%), Gaps = 5/242 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LIA + + G+   A  L   MR  G RP    +N L+  +     KA  ++ AL +F
Sbjct: 146 YNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGY----GKAGKMSNALPFF 201

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +MK     +P+ VTYN+L+    +AR++ + N    ++ E  L P   TY  ++D++ +
Sbjct: 202 NQMKAAG-FQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFAR 260

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              + +   +L+ M+    + D  T+ +L+ +           ++F+S+     +P+   
Sbjct: 261 ENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVI 320

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           ++ MI  YG+     KA  +  +M      P+  +Y   I +    D    A  + D++ 
Sbjct: 321 YDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDME 380

Query: 254 KL 255
            +
Sbjct: 381 TI 382



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/258 (18%), Positives = 101/258 (39%), Gaps = 35/258 (13%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           ++     L+  C +  +V +   +F E+    LAP+  TY  +M  Y  +G  ++  ++ 
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALF 96

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             M+    +P++ T+N LI  + +   F++   +F  +        + ++N++I    + 
Sbjct: 97  EEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRH 156

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
                A  +   M      PS IT+  ++  YG    +S A   F++       MK +  
Sbjct: 157 GKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQ-------MKAA-- 207

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
                                     G  P + TY +L   + +A       + L  M++
Sbjct: 208 --------------------------GFQPSAVTYNMLIAGFCRARDMTRANRALSDMKE 241

Query: 325 NGIVPNKRFFLEALETFS 342
            G+ P K  +   +++F+
Sbjct: 242 RGLEPTKVTYTILIDSFA 259



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 1/197 (0%)

Query: 135 GMIKEMESVLSR-MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           G ++   ++L+R  KS     D+     L++   K     +  +VF  +      P   T
Sbjct: 16  GDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVT 75

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + +++  Y     + K   +F++M      P+  TY C+I  +       RAR +FDE+ 
Sbjct: 76  YTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMP 135

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V + N ++   C +G   +A  L +     G  P   T+ LL   Y KA    
Sbjct: 136 VRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMS 195

Query: 314 LVQKLLKRMEQNGIVPN 330
                  +M+  G  P+
Sbjct: 196 NALPFFNQMKAAGFQPS 212


>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 504

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 154/327 (47%), Gaps = 6/327 (1%)

Query: 6   WYI-ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           W I +    Y+  + V+GK G+   A   F +M+  G  P  + +  +I  +     KA 
Sbjct: 156 WMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTIMINIY----GKAY 211

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
              KA   F+ M+    C PN+ TY  L+ A A+  N  +   +F EL      PD+YTY
Sbjct: 212 YSDKADDLFRSMRKA-LCPPNLYTYTALMNAHAREGNCVRAEEIFAELQSVGFIPDVYTY 270

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N +++AY +       + V   M     +PD +++N+LID++G+       + V+ S+  
Sbjct: 271 NALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQAVYDSMKE 330

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
           +  KPT+ +   ++ +Y KA    +AE + +++      P    +  +++ YG    +  
Sbjct: 331 AGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDE 390

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
              + + +        +STLN ++ AY   G   +A+ +F +  + G+TPD  ++  L  
Sbjct: 391 MESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSWTSLMG 450

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNK 331
           AY +  +      + ++M + G +P++
Sbjct: 451 AYAQRKLFRKCVSIFQKMVKAGCIPDR 477



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 153/311 (49%), Gaps = 14/311 (4%)

Query: 43  RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
           +PD   +N LI A+     K+K   +A   F  MK  + C P   ++N+LL A ++   +
Sbjct: 80  KPDVGCFNMLIDAY----GKSKQWREAEKTFHLMKDFQ-CLPTETSFNVLLAAYSRGVQL 134

Query: 103 DQVNALFKELHESILAPD---------IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
           ++   LF E+ ES  +P          I TYN  ++  GK+G + + E     M+     
Sbjct: 135 EKAEKLFHEMKESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGIL 194

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P + TF ++I+ YGK    DK + +F+S+  +   P L T+ +++  + +     +AE +
Sbjct: 195 PAVNTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEEI 254

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F ++ ++ + P   TY  ++  Y   ++ + A+E+F  + + G      + N +++A+  
Sbjct: 255 FAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGR 314

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
            GL  +A  ++++    G  P   ++ LL  +Y KA      ++L++ +E +G+ P+   
Sbjct: 315 AGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFM 374

Query: 334 FLEALETFSSS 344
           F   L  + +S
Sbjct: 375 FNSLLSAYGNS 385



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 146/329 (44%), Gaps = 12/329 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D G ++ LI   GK  Q R A   F  M++  C P  + +N L+ A+     +   L KA
Sbjct: 82  DVGCFNMLIDAYGKSKQWREAEKTFHLMKDFQCLPTETSFNVLLAAY----SRGVQLEKA 137

Query: 70  LGYFQKMKGMERCK--------PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
              F +MK                I TYN  L    ++  + Q    F+++ +  + P +
Sbjct: 138 EKLFHEMKESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGILPAV 197

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            T+  +++ YGK     + + +   M+   C P++ T+  L++++ +     + E++F  
Sbjct: 198 NTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEEIFAE 257

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           L      P + T+N+++  Y +      A+ VFQ M      P  ++Y  +I  +G    
Sbjct: 258 LQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGL 317

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
            + A+ ++D + + G    + +   +L +Y   G  TEA+ L     N GV PD+  +  
Sbjct: 318 TADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNS 377

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           L  AY  +   + ++ LL+ M  +   P+
Sbjct: 378 LLSAYGNSGRIDEMESLLESMVSSVAKPD 406



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 149/321 (46%), Gaps = 6/321 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQKQ   +     ++ +I + GK   +  A  LF  MR + C P+   Y AL+ AH    
Sbjct: 188 MQKQG-ILPAVNTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREG 246

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           +      +A   F +++ +    P++ TYN LL A ++  +      +F+ + E+ + PD
Sbjct: 247 N----CVRAEEIFAELQSVGFI-PDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPD 301

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             +YN ++DA+G+ G+  + ++V   MK    KP + +  LL+ SY K     + E++ +
Sbjct: 302 QVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVR 361

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            + +S  KP    FNS++  YG +    + E + + M +    P   T   +I  Y    
Sbjct: 362 EIENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGG 421

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            + +A E+F+ L   G    V +  +++ AY    L  +   +F+     G  PD +T K
Sbjct: 422 YIEKAEEVFNSLESKGLTPDVMSWTSLMGAYAQRKLFRKCVSIFQKMVKAGCIPDRATAK 481

Query: 301 LLYKAYTKANMKELVQKLLKR 321
           +   +       + V  +++R
Sbjct: 482 VFLSSCRSPEQVKEVTDMIER 502



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 118/277 (42%), Gaps = 44/277 (15%)

Query: 112 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171
           L  ++  PD+  +N ++DAYGK+   +E E     MK  QC P   +FN+L+ +Y +   
Sbjct: 74  LQGTMFKPDVGCFNMLIDAYGKSKQWREAEKTFHLMKDFQCLPTETSFNVLLAAYSRGVQ 133

Query: 172 FDKMEQVFKSLMHSKEKP-----------------------------------------T 190
            +K E++F  +  S   P                                          
Sbjct: 134 LEKAEKLFHEMKESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGI 193

Query: 191 LP---TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           LP   TF  MI  YGKA    KA+ +F+ M      P+  TY  ++  +    N  RA E
Sbjct: 194 LPAVNTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEE 253

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           IF EL  +G    V T NA+LEAY     PT A  +F+     GV PD  +Y +L  A+ 
Sbjct: 254 IFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFG 313

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           +A +    Q +   M++ G  P  +  +  L +++ +
Sbjct: 314 RAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKA 350


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 158/357 (44%), Gaps = 44/357 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +S LI V  + G    A+  F +M+ SG  PD  +Y  LI  +     +   +++AL   
Sbjct: 328 FSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYC----RNGMMSEALEIR 383

Query: 74  QKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            KM  +E+ C  ++V YN +L    + + +   NALF E+ E  + PD  T+  ++  + 
Sbjct: 384 DKM--LEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHC 441

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK------ 186
           K G + +  S+   M     KPDI+T+N+LID + K    +K  +++  ++  K      
Sbjct: 442 KEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHI 501

Query: 187 -----------------------------EKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
                                         KPTL T N++I  Y ++    KA+    KM
Sbjct: 502 SYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKM 561

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
            +    P  ITY  +I  +   + + +A  + +++   G    V T N +L  +C  G  
Sbjct: 562 ISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRM 621

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKRMEQNGIVPNKRF 333
            EA+L+       G+ PD STY  L   Y ++ N+KE   +    M Q G VP+  F
Sbjct: 622 QEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAF-RFHDEMLQRGFVPDDDF 677



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 167/356 (46%), Gaps = 48/356 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + KKG+   A  +F+EM + G  PD + YN L+       +      +A   F
Sbjct: 258 YNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNN----FLEAKDIF 313

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             M  +G+    P++++++ L+   ++  ++DQ    F+++  S L PD   Y  +++ Y
Sbjct: 314 SDMLHRGVS---PDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGY 370

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA-------FDKMEQ------- 177
            +NGM+ E   +  +M    C  D++ +N +++   K++        FD+M +       
Sbjct: 371 CRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDF 430

Query: 178 -VFKSLMHS--KE------------------KPTLPTFNSMIINYGKARLQGKAEYVFQK 216
             F +L+H   KE                  KP + T+N +I  + K     KA  ++ +
Sbjct: 431 CTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNE 490

Query: 217 MTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           M + K  P+ I+Y  ++   GYC+   VS A  ++DE+ + G    + T N +++ YC +
Sbjct: 491 MISRKIFPNHISYAILVN--GYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRS 548

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           G  ++AD       + GV PDS TY  L   + K    +    L+ +ME  G+ P+
Sbjct: 549 GDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPD 604



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 120/298 (40%), Gaps = 11/298 (3%)

Query: 36  EMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95
           +M   G   D   YN LI A+     +   L +A      M G +  KP + TYN ++  
Sbjct: 210 DMEQKGIFADIVTYNTLINAYC----REGLLGEAFEVMNSMSG-KGLKPTLFTYNAVING 264

Query: 96  -CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
            C + R V +   +F E+    L+PD  TYN ++    +N    E + + S M      P
Sbjct: 265 LCKKGRYV-RAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSP 323

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           D+I+F+ LI    +    D+    F+ +  S   P    +  +I  Y +  +  +A  + 
Sbjct: 324 DLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIR 383

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
            KM         + Y  I+   G C    ++ A  +FDE+ + G      T   ++  +C
Sbjct: 384 DKMLEQGCALDVVAYNTILN--GLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHC 441

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             G   +A  LF       + PD  TY +L   + K    E   +L   M    I PN
Sbjct: 442 KEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPN 499



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 138/291 (47%), Gaps = 11/291 (3%)

Query: 39  NSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI---LLRA 95
           +S C  D  V++ LI +++    +A+ L +    F+ +    R K  +V+ N    LL  
Sbjct: 108 SSTCGVDNLVFDLLIRSYV----QARKLNEGTDTFKIL----RRKGFLVSINACNSLLGG 159

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
             +   VD    ++ E+  S +  ++YT N +++A  K+  I +++  L  M+      D
Sbjct: 160 LVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFAD 219

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
           I+T+N LI++Y +     +  +V  S+     KPTL T+N++I    K     +A+ VF 
Sbjct: 220 IVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFN 279

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
           +M ++  +P   TY  ++      +N   A++IF ++   G    + + ++++     NG
Sbjct: 280 EMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNG 339

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
              +A + F +    G+ PD+  Y +L   Y +  M     ++  +M + G
Sbjct: 340 HLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQG 390



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 112/253 (44%), Gaps = 5/253 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R  + D   ++ LI    K+G    A+ LF  M     +PD   YN LI     T +  
Sbjct: 423 ERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTE-- 480

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             + KA   + +M    +  PN ++Y IL+        V +   L+ E+    + P + T
Sbjct: 481 --MEKANELWNEMIS-RKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVT 537

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
            N V+  Y ++G + + +  L +M S    PD IT+N LI+ + K +  DK   +   + 
Sbjct: 538 CNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKME 597

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
               +P + T+N ++  + +     +AE + +KM      P   TY  +I  Y   DN+ 
Sbjct: 598 TKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLK 657

Query: 244 RAREIFDELSKLG 256
            A    DE+ + G
Sbjct: 658 EAFRFHDEMLQRG 670



 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 37/193 (19%)

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           ++ +ES++S   S+ C  D + F+LLI SY + +  ++    FK L   + K  L + N+
Sbjct: 98  VEIVESLIS--MSSTCGVDNLVFDLLIRSYVQARKLNEGTDTFKIL---RRKGFLVSINA 152

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
                           +   +  M +                   V  A E+++E+++ G
Sbjct: 153 -------------CNSLLGGLVKMGW-------------------VDLAWEVYNEIARSG 180

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
            ++ V TLN M+ A C +    +      +    G+  D  TY  L  AY +  +     
Sbjct: 181 IELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAF 240

Query: 317 KLLKRMEQNGIVP 329
           +++  M   G+ P
Sbjct: 241 EVMNSMSGKGLKP 253


>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 155/325 (47%), Gaps = 9/325 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ ++ V  + G+      L   MR+ GC PD   +N LI A L +      LA  L  
Sbjct: 256 VYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLN 315

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +  G++   P+I+TYN L+ AC++  N+++   ++ ++      PD++TYN ++  YG
Sbjct: 316 EVRRSGIQ---PDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYG 372

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + GM +E   +   ++S    PD +T+N L+ ++ +    DK++++ + ++         
Sbjct: 373 RCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEM 432

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKY---TPSFITYECIITMYGYCDNVSRAREIF 249
           T+N++I  YGK   +G+ +  FQ  + MK    +P  +TY  +I   G  + +  A E+ 
Sbjct: 433 TYNTIIHMYGK---RGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVM 489

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+        + T +A++  Y   G   EA+  F+     G+ PD   Y ++     + 
Sbjct: 490 SEMLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRF 549

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
           N      KL + M  +   P+   +
Sbjct: 550 NESGKAMKLYQEMVLHSFKPDHALY 574



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 154/329 (46%), Gaps = 8/329 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           + WY  +  + + +++V+GK  Q  LA+ +F+    +       VYNA++  +  T    
Sbjct: 213 RHWYSPNARMLATILSVLGKANQEALAVEIFARAEAAXGNT-VQVYNAMMGVYARTGRFT 271

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV--DQVNALFKELHESILAPDI 121
           K   + L    + +G   C+P++V++N L+ A  ++  +  +    L  E+  S + PDI
Sbjct: 272 KV--QELLDLMRSRG---CEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDI 326

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TYN ++ A  +   ++E   V + M +++C+PD+ T+N +I  YG+     +  ++FK 
Sbjct: 327 ITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKD 386

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           L      P   T+NS++  + +     K + + + M  M +    +TY  II MYG    
Sbjct: 387 LESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQ 446

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
              A +++ ++   G+     T   ++++     +  EA  +     N  V P   T+  
Sbjct: 447 HDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPTLRTFSA 506

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           L   Y KA  +   ++    M ++GI P+
Sbjct: 507 LICGYAKAGKRVEAEETFDCMLRSGIKPD 535



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 155/327 (47%), Gaps = 9/327 (2%)

Query: 3    KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
            +Q+  + D  +++ LI      G    A  +F+ M   G  P     N L+ A L    +
Sbjct: 806  RQKCTMVDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQA-LIVDGR 864

Query: 63   AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
               L   +   Q M G +  K +I    ++L A A A N+ +V  +++ +  +   P ++
Sbjct: 865  LDELYVVIQELQDM-GFKISKSSI---TLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMH 920

Query: 123  TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
             Y  ++    K   ++++E+++S M+    KPD+  +N ++  Y     F K  QV++ +
Sbjct: 921  LYRIMIGLLAKGKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLI 980

Query: 183  MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
              +  KP   T+N++I+ Y + R   +   +  +M  +   P   TY+ +I+ +G    V
Sbjct: 981  QEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMV 1040

Query: 243  SRAREIFDELSKLGKDMKV--STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
             +A E+F+ L  L K+ K+  S  + M++ +  +G  ++A+ L       GV P  +T  
Sbjct: 1041 EQAEELFEGL--LSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMH 1098

Query: 301  LLYKAYTKANMKELVQKLLKRMEQNGI 327
            LL  +Y+ +   E  +K+L  ++  G+
Sbjct: 1099 LLMVSYSGSGQPEEAEKVLDNLKVEGL 1125



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 119/253 (47%), Gaps = 16/253 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH--TRDKAKALA 67
           D   Y+ +I+V G+ G +R A  LF ++ + G  PD   YN+L+ A       DK K + 
Sbjct: 360 DLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEIC 419

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
                 + M  M   K  + TYN ++    +    D    L+ ++  S  +PD  TY  +
Sbjct: 420 ------EDMVKMGFGKDEM-TYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVL 472

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D+ GK  MIKE   V+S M +   KP + TF+ LI  Y K     + E+ F  ++ S  
Sbjct: 473 IDSLGKANMIKEAAEVMSEMLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGI 532

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           KP    ++ M+    +    GKA  ++Q+M    + P    YE ++ + G        RE
Sbjct: 533 KPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLG-----KENRE 587

Query: 248 IFDELSKLGKDMK 260
             +++ K+ KDM+
Sbjct: 588 --EDVHKVVKDME 598



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/345 (20%), Positives = 149/345 (43%), Gaps = 12/345 (3%)

Query: 13   IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCR-PDPSVYNALITAH--LHTRDKAKALAKA 69
            +Y  ++    K G    A +L  +    G    D S++  +I A+  L    KA++L  +
Sbjct: 745  LYRSMVVTYCKMGFPETAHYLIDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGS 804

Query: 70   LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            L   QK   ++R       +N L+ A A +   ++  A+F  +     +P + + NG+M 
Sbjct: 805  LR--QKCTMVDR-----KVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQ 857

Query: 130  AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            A   +G + E+  V+  ++    K    +  L++D++       +++++++ +  +   P
Sbjct: 858  ALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFP 917

Query: 190  TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            T+  +  MI    K +     E +  +M    + P    +  ++ +Y    +  +  +++
Sbjct: 918  TMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKKTGQVY 977

Query: 250  DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
              + + G      T N ++  YC +  P E   L      +G+ P   TYK L  A+ K 
Sbjct: 978  QLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKL 1037

Query: 310  NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAK 354
             M E  ++L + +       ++ F+   ++ F +S  G+ S + K
Sbjct: 1038 QMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNS--GNHSKAEK 1080



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 120/253 (47%), Gaps = 37/253 (14%)

Query: 83   KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
            KP++  +N +L+      +  +   +++ + E+ L PD  TYN ++  Y ++   +E  S
Sbjct: 951  KPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLS 1010

Query: 143  VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
            ++  M+    +P + T+  LI ++GK Q  ++ E++F+ L+ SKE               
Sbjct: 1011 LMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLL-SKE--------------- 1054

Query: 203  KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
                              K   SF  Y  ++ M+    N S+A ++   + + G +  ++
Sbjct: 1055 -----------------CKLDRSF--YHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIA 1095

Query: 263  TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKLLKR 321
            T++ ++ +Y  +G P EA+ + +N    G+   +  Y  +  AY K  +    +QKL++ 
Sbjct: 1096 TMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLME- 1154

Query: 322  MEQNGIVPNKRFF 334
            M+++G+ P+ R +
Sbjct: 1155 MKKDGLEPDHRIW 1167



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/398 (19%), Positives = 153/398 (38%), Gaps = 63/398 (15%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT---RDKAKAL 66
           D   Y+ +I + GK+GQ  LA  L+S+M+ SG  PD   Y  LI +       ++ A+ +
Sbjct: 430 DEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVM 489

Query: 67  AKAL----------------GYFQKMKGMER-----------CKPNIVTYNILLRACAQA 99
           ++ L                GY +  K +E             KP+ + Y+++L    + 
Sbjct: 490 SEMLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRF 549

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG-------MIKEME----------- 141
               +   L++E+      PD   Y  ++   GK         ++K+ME           
Sbjct: 550 NESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVIC 609

Query: 142 SVLSRMK-------------SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           S+L + +             S  C+ D      ++ SYG      +  ++   L      
Sbjct: 610 SILVKGECFDHAANMLRLAISQGCELDRENLLSILGSYGSSGRHLEARELLDFLREHSSG 669

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSFITYECIITMYGYCDNVSRARE 247
                  ++II   KA   G A   + K      +  SF  YE ++      +  + A +
Sbjct: 670 SHQLINEALIIMLCKAHQLGDALREYGKARDFGLFCGSFTMYESLLLCCEENELFAEASQ 729

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT-PDSSTYKLLYKAY 306
           IF ++   G +       +M+  YC  G P  A  L + +   G+   D S +  + +AY
Sbjct: 730 IFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQAEEKGLLFDDVSIHTGVIEAY 789

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            K  + +  + L+  + Q   + +++ +   +  +++S
Sbjct: 790 GKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAAS 827



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 5/159 (3%)

Query: 10   DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
            D   Y+ LI +  +  +    + L  EMR  G  P    Y +LI+A      K + + +A
Sbjct: 988  DEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAF----GKLQMVEQA 1043

Query: 70   LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               F+ +   E CK +   Y+I+++    + N  +   L   + E+ + P I T + +M 
Sbjct: 1044 EELFEGLLSKE-CKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMV 1102

Query: 130  AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
            +Y  +G  +E E VL  +K        + ++ +ID+Y K
Sbjct: 1103 SYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLK 1141


>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
          Length = 642

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 148/318 (46%), Gaps = 6/318 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  YS LI+   K G+   A+ LF EM+++  +P   +Y  L+  +     K   + KA
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYF----KVGKVEKA 287

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  F++MK    C P + TY  L++   +A  VD+    +K++    L PD+   N +M+
Sbjct: 288 LDLFEEMK-RAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMN 346

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA-FDKMEQVFKSLMHSKEK 188
             GK G ++E+ +V S M   +C P ++++N +I +  + +A   ++   F  +      
Sbjct: 347 ILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVS 406

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P+  T++ +I  Y K     KA  + ++M    + P    Y  +I   G       A E+
Sbjct: 407 PSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADEL 466

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F EL +   ++       M++ +   G  +EA  LF    N G  PD   Y  L     K
Sbjct: 467 FKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVK 526

Query: 309 ANMKELVQKLLKRMEQNG 326
           A M      LL++ME+NG
Sbjct: 527 AGMINEANSLLRKMEENG 544



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 134/315 (42%), Gaps = 5/315 (1%)

Query: 12  GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
            + S+L+  +G+      A+ +F + +   C+P  S YN++I   +      K       
Sbjct: 163 AVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHE---- 218

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            + +M     C P+ +TY+ L+ +  +    D    LF E+ ++ + P    Y  ++  Y
Sbjct: 219 VYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIY 278

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G +++   +   MK   C P + T+  LI   GK    D+    +K ++     P +
Sbjct: 279 FKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDV 338

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII-TMYGYCDNVSRAREIFD 250
              N+++   GK     +   VF +M   + TP+ ++Y  +I  ++    +VS     FD
Sbjct: 339 VFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFD 398

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           ++          T + +++ YC      +A LL E     G  P  + Y  L  A  KA 
Sbjct: 399 KMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAK 458

Query: 311 MKELVQKLLKRMEQN 325
             E   +L K +++N
Sbjct: 459 RYEAADELFKELKEN 473



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 130/295 (44%), Gaps = 7/295 (2%)

Query: 37  MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 96
           +RN+     P+V + L+ A      +AK ++KAL  F + KG  +CKP   TYN ++   
Sbjct: 153 VRNTYVSVSPAVLSELVKA----LGRAKMVSKALSVFYQAKG-RKCKPTSSTYNSVILML 207

Query: 97  AQARNVDQVNALFKEL-HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
            Q    ++V+ ++ E+ +E    PD  TY+ ++ +Y K G       +   MK N  +P 
Sbjct: 208 MQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPT 267

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
              +  L+  Y K    +K   +F+ +  +   PT+ T+  +I   GKA    +A   ++
Sbjct: 268 EKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYK 327

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA-YCMN 274
            M     TP  +    ++ + G    V     +F E+        V + N +++A +   
Sbjct: 328 DMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESK 387

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
              +E    F+      V+P   TY +L   Y K N  E    LL+ M++ G  P
Sbjct: 388 AHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPP 442



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 111/230 (48%), Gaps = 9/230 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI    K  +   A+ L  EM   G  P P+ Y +LI A      KAK    A   F
Sbjct: 412 YSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINA----LGKAKRYEAADELF 467

Query: 74  QKMKGMERCKPNIVT--YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           +++K       N+ +  Y ++++   +   + +   LF E+      PD+Y YN +M   
Sbjct: 468 KELK---ENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGM 524

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K GMI E  S+L +M+ N C+ DI + N++++ + +     +  ++F+++ HS  KP  
Sbjct: 525 VKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDG 584

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
            T+N+++  +  A +  +A  + ++M    +    ITY  I+   G  D+
Sbjct: 585 VTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNVDH 634



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 128/318 (40%), Gaps = 39/318 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D    + L+ ++GK G+      +FSEM    C P    YN +I A   ++     ++  
Sbjct: 337 DVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVS-- 394

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
             +F KMK  +   P+  TY+IL+    +   V++   L +E+ E    P    Y  +++
Sbjct: 395 -SWFDKMKA-DSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIN 452

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A GK    +  + +   +K N        + ++I  +GK     +   +F  + +    P
Sbjct: 453 ALGKAKRYEAADELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGP 512

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  +N+++    KA +  +A  + +KM                      +N  RA    
Sbjct: 513 DVYAYNALMSGMVKAGMINEANSLLRKME---------------------ENGCRA---- 547

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
                      +++ N +L  +   G+P  A  +FE   + G+ PD  TY  L   +  A
Sbjct: 548 ----------DINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHA 597

Query: 310 NMKELVQKLLKRMEQNGI 327
            M E   ++++ M+  G 
Sbjct: 598 GMFEEAARMMREMKDKGF 615



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 83/155 (53%), Gaps = 5/155 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ +I   GK G+   A+ LF+EM+N G  PD   YNAL++  +    KA  + +A   
Sbjct: 481 VYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMV----KAGMINEANSL 536

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            +KM+    C+ +I ++NI+L   A+     +   +F+ +  S + PD  TYN ++  + 
Sbjct: 537 LRKMEE-NGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFA 595

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
             GM +E   ++  MK    + D IT++ ++D+ G
Sbjct: 596 HAGMFEEAARMMREMKDKGFEYDAITYSSILDAVG 630



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 71/177 (40%), Gaps = 7/177 (3%)

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM- 220
           L+ + G+ +   K   VF      K KPT  T+NS+I+   +   +G+ E V +  T M 
Sbjct: 168 LVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQ---EGQHEKVHEVYTEMC 224

Query: 221 ---KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
                 P  ITY  +I+ Y        A  +FDE+              +L  Y   G  
Sbjct: 225 NEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKV 284

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            +A  LFE     G +P   TY  L K   KA   +      K M ++G+ P+  F 
Sbjct: 285 EKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFL 341


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 159/324 (49%), Gaps = 13/324 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I+     G    A+ L  EM+++G  PD   +  +ITA  +  D    L  A
Sbjct: 111 DVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGD----LDGA 166

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           + + + M     C PN+VTY  L+ A A+A+ +++   L +E+ E    P++ TYN ++D
Sbjct: 167 MDHLRSMG----CDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVD 222

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A  K  M+   + V+ +M      P+++TFN L+D + KR   D   ++   ++    +P
Sbjct: 223 ALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRP 282

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRARE 247
            + T++++I    K++   +A+ V ++M     TP   TY  +I  +G C  D +  A +
Sbjct: 283 NVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALI--HGLCKADKIEEAEQ 340

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +   ++  G    V   ++++ A+C +G   EA    +       +PD  TY  +     
Sbjct: 341 MLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLC 400

Query: 308 KANMKELVQKLLKRMEQNG-IVPN 330
           K       Q +L++M+++G ++P+
Sbjct: 401 KLGKIAEAQVILEQMQESGDVLPD 424



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 155/351 (44%), Gaps = 37/351 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLHTRDKAKALAKAL- 70
           Y+ LIA   +  +   AM L  EMR  GC P+   YN L+ A   L     A+ + K + 
Sbjct: 182 YTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMI 241

Query: 71  ----------------GYFQK--------------MKGMERCKPNIVTYNILLRACAQAR 100
                           G+ ++               KGM   +PN+VTY+ L+    +++
Sbjct: 242 EGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGM---RPNVVTYSALIDGLCKSQ 298

Query: 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
              +   + +E+    + PD +TY+ ++    K   I+E E +L RM  + C PD++ ++
Sbjct: 299 KFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYS 358

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT-A 219
            +I ++ K     + ++  + +   ++ P + T+N++I    K     +A+ + ++M  +
Sbjct: 359 SIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQES 418

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
               P  +TY  +I      D +  A+++ D + K G +  V T   +++  C  G   E
Sbjct: 419 GDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEE 478

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           A+ L +     G  P+  TY  L     KA   +  +++++ M   G  PN
Sbjct: 479 AEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPN 529



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 152/313 (48%), Gaps = 8/313 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI  + K  +   A  +  EM+  G  PD   Y+ALI    H   KA  + +A    
Sbjct: 287 YSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALI----HGLCKADKIEEAEQML 342

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M G   C P++V Y+ ++ A  ++  + +     +E+ +   +PD+ TYN V+D   K
Sbjct: 343 RRMAG-SGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCK 401

Query: 134 NGMIKEMESVLSRMK-SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
            G I E + +L +M+ S    PD++T++ +I+   K     + +++   +  +   P + 
Sbjct: 402 LGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVV 461

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+ ++I    K     +AEY+ Q M      P+ +TY  +I+       V  A  + +E+
Sbjct: 462 TYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEM 521

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN--MGVTPDSSTYKLLYKAYTKAN 310
              G    + T N M+   C++G   EA  L +   +     +PD++TY+ +  A   ++
Sbjct: 522 RNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSD 581

Query: 311 MKELVQKLLKRME 323
           + +  ++LL++M+
Sbjct: 582 LVQEAEQLLEQMK 594



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 134/268 (50%), Gaps = 13/268 (4%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C+P++ +YNI++     A ++     L +E+  +  APD +T+  ++ A    G   +++
Sbjct: 108 CEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAG---DLD 164

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK---PTLPTFNSMI 198
             +  ++S  C P+++T+  LI ++ + +   K+E+  K L   +E+   P L T+N ++
Sbjct: 165 GAMDHLRSMGCDPNVVTYTALIAAFARAK---KLEEAMKLLEEMRERGCPPNLVTYNVLV 221

Query: 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLG 256
               K  + G A+ V +KM    + P+ +T+  ++   G+C   NV  AR++   +   G
Sbjct: 222 DALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVD--GFCKRGNVDDARKLLGIMVAKG 279

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
               V T +A+++  C +    EA  + E     GVTPD+ TY  L     KA+  E  +
Sbjct: 280 MRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAE 339

Query: 317 KLLKRMEQNGIVPNKRFFLEALETFSSS 344
           ++L+RM  +G  P+   +   +  F  S
Sbjct: 340 QMLRRMAGSGCTPDVVVYSSIIHAFCKS 367



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 136/317 (42%), Gaps = 8/317 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L+ V+ +  + R A  LF     + C PD   YN +I+   +  D    L  AL   
Sbjct: 80  WNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGD----LHAALELL 135

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++MK      P+  T+  ++ A A A ++D        L      P++ TY  ++ A+ +
Sbjct: 136 EEMKSAGF-APDAFTHTPIITAMANAGDLD---GAMDHLRSMGCDPNVVTYTALIAAFAR 191

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              ++E   +L  M+   C P+++T+N+L+D+  K       + V K ++     P + T
Sbjct: 192 AKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMT 251

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           FNS++  + K      A  +   M A    P+ +TY  +I           A+E+ +E+ 
Sbjct: 252 FNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMK 311

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G      T +A++   C      EA+ +       G TPD   Y  +  A+ K+    
Sbjct: 312 TRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLL 371

Query: 314 LVQKLLKRMEQNGIVPN 330
             QK L+ M +    P+
Sbjct: 372 EAQKTLQEMRKQRKSPD 388



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 138/311 (44%), Gaps = 6/311 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L+    K+G    A  L   M   G RP+   Y+ALI        K++   +A    
Sbjct: 252 FNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLC----KSQKFLEAKEVL 307

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++MK      P+  TY+ L+    +A  +++   + + +  S   PD+  Y+ ++ A+ K
Sbjct: 308 EEMK-TRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCK 366

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLP 192
           +G + E +  L  M+  +  PD++T+N +ID   K     + + + + +  S +  P + 
Sbjct: 367 SGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVV 426

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T++++I    K+ +  +A+ +  +M      P  +TY  II     C  +  A  +   +
Sbjct: 427 TYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGM 486

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            + G    V T   ++   C      EA+ + E   N G  P+  TY  +      +   
Sbjct: 487 KRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRI 546

Query: 313 ELVQKLLKRME 323
           +  Q+L++RM+
Sbjct: 547 KEAQQLVQRMK 557



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 7/184 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ+    + D   YS +I  + K      A  L   M  +GC PD   Y  +I       
Sbjct: 415 MQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLC--- 471

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K   L +A    Q MK    C PN+VTY  L+    +AR VD+   + +E+  +   P+
Sbjct: 472 -KCGRLEEAEYLLQGMK-RAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPN 529

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSN--QCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           + TYN +++    +G IKE + ++ RMK    +C PD  T+  ++++        + EQ+
Sbjct: 530 LVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQL 589

Query: 179 FKSL 182
            + +
Sbjct: 590 LEQM 593



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 72/143 (50%), Gaps = 7/143 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I  + K G+   A +L   M+ +GC P+   Y  LI+       KA+ + +A
Sbjct: 459 DVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLC----KARKVDEA 514

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE--SILAPDIYTYNGV 127
               ++M+    C PN+VTYN ++     +  + +   L + + +  +  +PD  TY  +
Sbjct: 515 ERVMEEMRN-AGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTI 573

Query: 128 MDAYGKNGMIKEMESVLSRMKSN 150
           ++A   + +++E E +L +MKS 
Sbjct: 574 VNALMSSDLVQEAEQLLEQMKST 596


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 154/335 (45%), Gaps = 9/335 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  Y+ L+    +      A  +F EM + G  PD   ++ALI        K   L +A
Sbjct: 462 DTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALI----GLLSKNGCLDQA 517

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L YF+ MK      P+ V Y IL+    +   + +   +  E+ E     D+ TYN +++
Sbjct: 518 LKYFRDMKN-AGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILN 576

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K  M+ E + + + M      PD  TF  LI+ Y K    +K   +F+ ++    KP
Sbjct: 577 GLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKP 636

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRARE 247
            + T+N++I  + K     K   ++  M + +  P+ I+Y  +I   GYC+   VS A  
Sbjct: 637 DVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILIN--GYCNMGCVSEAFR 694

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           ++DE+ + G +  + T N +++ YC  G   +AD    N    G+ PD  TY  L   + 
Sbjct: 695 LWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFI 754

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           K    +    L+ +ME +G++P+   +   L  FS
Sbjct: 755 KEENMDRAFALVNKMENSGLLPDVITYNVILNGFS 789



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 164/363 (45%), Gaps = 44/363 (12%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   +S LI ++ K G    A+  F +M+N+G  PD  +Y  LI        +   ++
Sbjct: 495 VPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFC----RNGVMS 550

Query: 68  KALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +AL    +M  +E+ C  ++VTYN +L    + + + + + LF E+ E  + PD YT+  
Sbjct: 551 EALKVRDEM--LEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTT 608

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++ Y K+G + +  ++   M     KPD++T+N LID + K    +K+ +++  ++  +
Sbjct: 609 LINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRR 668

Query: 187 EKP-----------------------------------TLPTFNSMIINYGKARLQGKAE 211
             P                                   T+ T N+++  Y +A    KA+
Sbjct: 669 IYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKAD 728

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
                M      P  ITY  +I  +   +N+ RA  + +++   G    V T N +L  +
Sbjct: 729 EFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGF 788

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKRMEQNGIVPN 330
              G   EA+L+       GV PD STY  L   + T+ N+KE   ++   M Q G VP+
Sbjct: 789 SRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAF-RVHDEMLQRGFVPD 847

Query: 331 KRF 333
            +F
Sbjct: 848 DKF 850



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 141/321 (43%), Gaps = 15/321 (4%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           + L+  + K G   LA  ++ E+  SG + +    N +I A      K + +     +  
Sbjct: 327 NSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALC----KNQKIENTKSFLS 382

Query: 75  KM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            M  KG+    P++VTYN L+ A  +   +++   L   +    L P ++TYN +++   
Sbjct: 383 DMEEKGV---FPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLC 439

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G     + VL  M      PD  T+N+L+    +       E++F  +      P L 
Sbjct: 440 KTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLV 499

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFD 250
           +F+++I    K     +A   F+ M      P  + Y  +I   G+C N  +S A ++ D
Sbjct: 500 SFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIG--GFCRNGVMSEALKVRD 557

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-A 309
           E+ + G  + V T N +L   C   + +EAD LF      GV PD  T+  L   Y K  
Sbjct: 558 EMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDG 617

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
           NM + V  L + M Q  + P+
Sbjct: 618 NMNKAV-TLFEMMIQRNLKPD 637



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 107/253 (42%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C  N + +++L+R   QAR + +    F+ L    L   I   N ++    K G +    
Sbjct: 284 CGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAW 343

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
            +   +  +  + ++ T N++I++  K Q  +  +     +      P + T+N++I  Y
Sbjct: 344 EIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAY 403

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            +  L  +A  +   M+     P   TY  II          RA+ + DE+ K+G     
Sbjct: 404 CRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDT 463

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
           +T N +L   C N    +A+ +F+   + GV PD  ++  L    +K    +   K  + 
Sbjct: 464 ATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRD 523

Query: 322 MEQNGIVPNKRFF 334
           M+  G+ P+   +
Sbjct: 524 MKNAGLAPDNVIY 536


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 151/325 (46%), Gaps = 8/325 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ LI  + +  +   A  L  +M   G +P+   Y A I  +     K+  + 
Sbjct: 518 LPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLY----SKSGEIQ 573

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            A  YF+ M       PN V Y IL++      N  +  + FK + E  L PDI  Y+ +
Sbjct: 574 VAERYFKDMLS-SGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAI 632

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           + +  KNG  KE   V  +       PD+  +N LI  + K    +K  Q++  ++H+  
Sbjct: 633 IHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGI 692

Query: 188 KPTLPTFNSMIINYGKARLQGKAEY--VFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
            P +  +N++I +YG  +     E   +F +M +   +P    Y  +I   G   N+ +A
Sbjct: 693 NPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKA 752

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             +F E  +      +S  N++++++C +G   EA  LF++  +  +TP+  TY +L  A
Sbjct: 753 LSLFHEAQQKSVG-SLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDA 811

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
           Y KA M E  ++L   ME   I+PN
Sbjct: 812 YGKAEMMEEAEQLFLDMETRNIIPN 836



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 142/325 (43%), Gaps = 16/325 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++  I D   YS +I  + K G+T+ AM +F +   +G  PD  +YN+LI+      D  
Sbjct: 619 EKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGD-- 676

Query: 64  KALAKALGYFQKM--KGMERCKPNIVTYNILLR--ACAQARNVDQVNALFKELHESILAP 119
             + KA   + +M   G+    PNIV YN L+      ++ N+ +   LF E+    ++P
Sbjct: 677 --IEKASQLYDEMLHNGI---NPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISP 731

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP--DIITFNLLIDSYGKRQAFDKMEQ 177
           D Y Y  ++D  GK G    +E  LS     Q K    +  FN LIDS+ K     +  +
Sbjct: 732 DGYIYCILIDGCGKEG---NLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARE 788

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           +F  ++  K  P + T+  +I  YGKA +  +AE +F  M      P+ +TY  ++  Y 
Sbjct: 789 LFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYN 848

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
              N  +   +F ++   G          M  AYC  G   EA  L   S   G+  +  
Sbjct: 849 QIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDD 908

Query: 298 TYKLLYKAYTKANMKELVQKLLKRM 322
            +  L     K      V +LL  M
Sbjct: 909 VFDALIFHLCKEKQISTVLELLSEM 933



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 143/319 (44%), Gaps = 9/319 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + K G+   AM LF+EM  +G  PD   YN LI  +L + D    +AKA    
Sbjct: 384 YNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHD----MAKACELL 439

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +MK   +  P+  TY++L+     + ++ + N +  ++  + + P+++ Y  ++ AY +
Sbjct: 440 AEMKA-RKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQ 498

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
               +    +L  M +N   PD+  +N LI    + +  ++ + +   +     KP   T
Sbjct: 499 ESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHT 558

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDE 251
           + + I  Y K+     AE  F+ M +    P+ + Y  +I   G+CD  N   A   F  
Sbjct: 559 YGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIK--GHCDVGNTVEALSTFKC 616

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G    +   +A++ +   NG   EA  +F      GV PD   Y  L   + K   
Sbjct: 617 MLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGD 676

Query: 312 KELVQKLLKRMEQNGIVPN 330
            E   +L   M  NGI PN
Sbjct: 677 IEKASQLYDEMLHNGINPN 695



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 133/300 (44%), Gaps = 7/300 (2%)

Query: 32  W-LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90
           W ++  M  +   PD   Y  +I AH    D  K     L   +K      CKPN+ TYN
Sbjct: 227 WKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKG-KMVLSEMEK-----ECKPNLFTYN 280

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
             +    Q   VD+   + K + E  L PD +TY  ++D + K    KE + +   M S+
Sbjct: 281 AFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSS 340

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
              P+  T+  LID + K    ++  ++   ++    K  + T+N+MI    KA    KA
Sbjct: 341 GLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKA 400

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
             +F +M      P   TY  +I  Y    ++++A E+  E+          T + ++  
Sbjct: 401 MSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISG 460

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            C +    +A+ + +     GV P+   Y  L KAY + +  E+  +LLK M  NG++P+
Sbjct: 461 LCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPD 520



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 151/335 (45%), Gaps = 9/335 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+    K+ +++ A  +F  M +SG  P+   Y ALI   +    K   + +A
Sbjct: 310 DGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFI----KEGNIEEA 365

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           L    +M  +G+   K N+VTYN ++   A+A  + +  +LF E+  + + PD +TYN +
Sbjct: 366 LRIKDEMITRGL---KLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLL 422

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D Y K+  + +   +L+ MK+ +  P   T+++LI          K  +V   ++ +  
Sbjct: 423 IDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGV 482

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           KP +  + ++I  Y +      A  + + M A    P    Y C+I        V  A+ 
Sbjct: 483 KPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKM 542

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +  ++ + G      T  A +  Y  +G    A+  F++  + G+ P++  Y +L K + 
Sbjct: 543 LLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHC 602

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
                       K M + G++P+ R +   + + S
Sbjct: 603 DVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLS 637



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 143/322 (44%), Gaps = 8/322 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + +  IY+ LI      G T  A+  F  M   G  PD   Y+A+I    H+  K     
Sbjct: 588 VPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAII----HSLSKNGKTK 643

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A+G F K        P++  YN L+    +  ++++ + L+ E+  + + P+I  YN +
Sbjct: 644 EAMGVFLKFLK-TGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTL 702

Query: 128 MDAYG--KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
           ++ YG  K+G + E   +   M S    PD   + +LID  GK    +K   +F      
Sbjct: 703 INDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHE-AQQ 761

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
           K   +L  FNS+I ++ K     +A  +F  M   K TP+ +TY  +I  YG  + +  A
Sbjct: 762 KSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEA 821

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            ++F ++          T  ++L +Y   G   +   LF++    G+  D+  Y ++  A
Sbjct: 822 EQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASA 881

Query: 306 YTKANMKELVQKLLKRMEQNGI 327
           Y K        KLL +    GI
Sbjct: 882 YCKEGKSLEALKLLNKSLVEGI 903



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 119/247 (48%), Gaps = 1/247 (0%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P ++  N L+R   +A  +     ++  + E+ + PD+YTY  V+ A+ K G + + + V
Sbjct: 205 PTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMV 264

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           LS M+  +CKP++ T+N  I    +  A D+  +V K +M     P   T+  ++  + K
Sbjct: 265 LSEMEK-ECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCK 323

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
            +   +A+ +F+ M +    P+  TY  +I  +    N+  A  I DE+   G  + V T
Sbjct: 324 QKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVT 383

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            NAM+      G   +A  LF      G+ PD+ TY LL   Y K++      +LL  M+
Sbjct: 384 YNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMK 443

Query: 324 QNGIVPN 330
              + P+
Sbjct: 444 ARKLTPS 450



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 1/187 (0%)

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           ++  F++ ID +      ++   VF + +     PTL   N+++ +  KA + G    V+
Sbjct: 171 NLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVY 230

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
             M   K  P   TY  +I  +    +V + + +  E+ K  K   + T NA +   C  
Sbjct: 231 GSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKP-NLFTYNAFIGGLCQT 289

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           G   EA  + +     G+ PD  TY LL   + K    +  + + + M  +G+ PN+  +
Sbjct: 290 GAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTY 349

Query: 335 LEALETF 341
              ++ F
Sbjct: 350 TALIDGF 356



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 5/224 (2%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           + Q+  +     ++ LI    K G+   A  LF +M +    P+   Y  LI A+     
Sbjct: 758 EAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAY----G 813

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           KA+ + +A   F  M+      PN +TY  LL +  Q  N  ++ +LFK++    +A D 
Sbjct: 814 KAEMMEEAEQLFLDME-TRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDA 872

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
             Y  +  AY K G   E   +L++      K +   F+ LI    K +    + ++   
Sbjct: 873 IAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSE 932

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
           +   +   +  T N++++ + K+  + +A  V   M  + + P+
Sbjct: 933 MGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVPT 976


>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
          Length = 1042

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 155/325 (47%), Gaps = 9/325 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ ++ V  + G+      L   MR+ GC PD   +N LI A L +      LA  L  
Sbjct: 199 VYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLN 258

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +  G++   P+I+TYN L+ AC++  N+++   ++ ++      PD++TYN ++  YG
Sbjct: 259 EVRRSGIQ---PDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYG 315

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + GM +E   +   ++S    PD +T+N L+ ++ +    DK++++ + ++         
Sbjct: 316 RCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEM 375

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKY---TPSFITYECIITMYGYCDNVSRAREIF 249
           T+N++I  YGK   +G+ +  FQ  + MK    +P  +TY  +I   G  + +  A E+ 
Sbjct: 376 TYNTIIHMYGK---RGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVM 432

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+        + T +A++  Y   G   EA+  F+     G+ PD   Y ++     + 
Sbjct: 433 SEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRF 492

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
           N      KL + M  +   P+   +
Sbjct: 493 NESGKAMKLYQEMVLHSFKPDHALY 517



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 154/329 (46%), Gaps = 8/329 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           + WY  +  + + +++V+GK  Q  LA+ +F+    +       VYNA++  +  T    
Sbjct: 156 RHWYSPNARMLATILSVLGKANQEALAVEIFARAEAASGNT-VQVYNAMMGVYARTGRFT 214

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV--DQVNALFKELHESILAPDI 121
           K   + L    + +G   C+P++V++N L+ A  ++  +  +    L  E+  S + PDI
Sbjct: 215 KV--QELLDLMRSRG---CEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDI 269

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TYN ++ A  +   ++E   V + M +++C+PD+ T+N +I  YG+     +  ++FK 
Sbjct: 270 ITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKD 329

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           L      P   T+NS++  + +     K + + + M  M +    +TY  II MYG    
Sbjct: 330 LESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQ 389

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
              A +++ ++   G+     T   ++++     +  EA  +     N  V P   T+  
Sbjct: 390 HDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSA 449

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           L   Y KA  +   ++    M ++GI P+
Sbjct: 450 LICGYAKAGKRVEAEETFDCMLRSGIKPD 478



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 151/348 (43%), Gaps = 36/348 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH--TRDKAKALA 67
           D   Y+ +I+V G+ G +R A  LF ++ + G  PD   YN+L+ A       DK K + 
Sbjct: 303 DLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEIC 362

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
                 + M  M   K  + TYN ++    +    D    L+ ++  S  +PD  TY  +
Sbjct: 363 ------EDMVKMGFGKDEM-TYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVL 415

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D+ GK  MIKE   V+S M + + KP + TF+ LI  Y K     + E+ F  ++ S  
Sbjct: 416 IDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGI 475

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           KP    ++ M+    +    GKA  ++Q+M    + P    YE ++ + G  +      +
Sbjct: 476 KPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHK 535

Query: 248 IFDELSKL-GKDMKVSTLNAMLEAYCMN-------------------------GLPTEAD 281
           +  ++ +L G + +V   + +++  C +                         GL    +
Sbjct: 536 VVKDMEELCGMNSQV-ICSILVKGECFDHAANMLRLAISQGCELDQYGKARDFGLFCGTE 594

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
            LFE   +     D S Y ++ K +  +      +KLL  M++ G+ P
Sbjct: 595 ELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEP 642



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 154/357 (43%), Gaps = 44/357 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I + GK+GQ  LA  L+S+M+ SG  PD   Y  LI     +  KA  + +A
Sbjct: 373 DEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLI----DSLGKANMIKEA 428

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                +M    R KP + T++ L+   A+A    +    F  +  S + PD   Y+ ++D
Sbjct: 429 AEVMSEMLN-ARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLD 487

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              +     +   +   M  +  KPD   + +++   GK    + + +V K +       
Sbjct: 488 ILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDM------E 541

Query: 190 TLPTFNSMII----------------------------NYGKARLQG---KAEYVFQKMT 218
            L   NS +I                             YGKAR  G     E +F+ + 
Sbjct: 542 ELCGMNSQVICSILVKGECFDHAANMLRLAISQGCELDQYGKARDFGLFCGTEELFEGLL 601

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           + +       Y  ++ M+    N S+A ++   + + G +  ++T++ ++ +Y  +G P 
Sbjct: 602 SKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPE 661

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKLLKRMEQNGIVPNKRFF 334
           EA+ + +N    G+   +  Y  +  AY K  +    +QKL++ M+++G+ P+ R +
Sbjct: 662 EAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLME-MKKDGLEPDHRIW 717


>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 155/325 (47%), Gaps = 9/325 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ ++ V  + G+      L   MR+ GC PD   +N LI A L +      LA  L  
Sbjct: 224 VYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLN 283

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +  G++   P+I+TYN L+ AC++  N+++   ++ ++      PD++TYN ++  YG
Sbjct: 284 EVRRSGIQ---PDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYG 340

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + GM +E   +   ++S    PD +T+N L+ ++ +    DK++++ + ++         
Sbjct: 341 RCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEM 400

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKY---TPSFITYECIITMYGYCDNVSRAREIF 249
           T+N++I  YGK   +G+ +  FQ  + MK    +P  +TY  +I   G  + +  A E+ 
Sbjct: 401 TYNTIIHMYGK---RGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVM 457

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+        + T +A++  Y   G   EA+  F+     G+ PD   Y ++     + 
Sbjct: 458 SEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRF 517

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
           N      KL + M  +   P+   +
Sbjct: 518 NESGKAMKLYQEMVLHSFKPDHALY 542



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 154/329 (46%), Gaps = 8/329 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           + WY  +  + + +++V+GK  Q  LA+ +F+    +       VYNA++  +  T    
Sbjct: 181 RHWYSPNARMLATILSVLGKANQEALAVEIFARAEAASGNT-VQVYNAMMGVYARTGRFT 239

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV--DQVNALFKELHESILAPDI 121
           K   + L    + +G   C+P++V++N L+ A  ++  +  +    L  E+  S + PDI
Sbjct: 240 KV--QELLDLMRSRG---CEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDI 294

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TYN ++ A  +   ++E   V + M +++C+PD+ T+N +I  YG+     +  ++FK 
Sbjct: 295 ITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKD 354

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           L      P   T+NS++  + +     K + + + M  M +    +TY  II MYG    
Sbjct: 355 LESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQ 414

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
              A +++ ++   G+     T   ++++     +  EA  +     N  V P   T+  
Sbjct: 415 HDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSA 474

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           L   Y KA  +   ++    M ++GI P+
Sbjct: 475 LICGYAKAGKRVEAEETFDCMLRSGIKPD 503



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 156/327 (47%), Gaps = 9/327 (2%)

Query: 3    KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
            +Q+  + D  +++ LI      G    A  +F+ M   G  P     N L+ A L    +
Sbjct: 774  RQKCTMVDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQA-LIVDGR 832

Query: 63   AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
               L   +   Q M G +  K +I    ++L A A A N+ +V  +++ +  +   P ++
Sbjct: 833  LDELYVVIQELQDM-GFKISKSSI---TLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMH 888

Query: 123  TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
             Y  ++    K   ++++E+++S M+  + KPD+  +N ++  Y     F K  QV++ +
Sbjct: 889  LYRIMIGLLAKGKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLI 948

Query: 183  MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
              +  KP   T+N++I+ Y + R   +   +  +M  +   P   TY+ +I+ +G    V
Sbjct: 949  QEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMV 1008

Query: 243  SRAREIFDELSKLGKDMKV--STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
             +A E+F+ L  L K+ K+  S  + M++ +  +G  ++A+ L       GV P  +T  
Sbjct: 1009 EQAEELFEGL--LSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMH 1066

Query: 301  LLYKAYTKANMKELVQKLLKRMEQNGI 327
            LL  +Y+ +   E  +K+L  ++  G+
Sbjct: 1067 LLMVSYSGSGQPEEAEKVLDNLKVEGL 1093



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 120/253 (47%), Gaps = 16/253 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH--TRDKAKALA 67
           D   Y+ +I+V G+ G +R A  LF ++ + G  PD   YN+L+ A       DK K + 
Sbjct: 328 DLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEIC 387

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
                 + M  M   K  + TYN ++    +    D    L+ ++  S  +PD  TY  +
Sbjct: 388 ------EDMVKMGFGKDEM-TYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVL 440

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D+ GK  MIKE   V+S M + + KP + TF+ LI  Y K     + E+ F  ++ S  
Sbjct: 441 IDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGI 500

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           KP    ++ M+    +    GKA  ++Q+M    + P    YE ++ + G        RE
Sbjct: 501 KPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLG-----KENRE 555

Query: 248 IFDELSKLGKDMK 260
             +++ K+ KDM+
Sbjct: 556 --EDVHKVVKDME 566



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/345 (20%), Positives = 150/345 (43%), Gaps = 12/345 (3%)

Query: 13   IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCR-PDPSVYNALITAH--LHTRDKAKALAKA 69
            +Y  ++    K G    A +L  +    G    D S++  +I A+  L    KA++L  +
Sbjct: 713  LYRSMVVTYCKMGFPETAHYLIDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGS 772

Query: 70   LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            L   QK   ++R       +N L+ A A +   ++  A+F  +     +P + + NG+M 
Sbjct: 773  LR--QKCTMVDR-----KVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQ 825

Query: 130  AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            A   +G + E+  V+  ++    K    +  L++D++       +++++++ +  +   P
Sbjct: 826  ALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFP 885

Query: 190  TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            T+  +  MI    K +     E +  +M   ++ P    +  ++ +Y    +  +  +++
Sbjct: 886  TMHLYRIMIGLLAKGKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVY 945

Query: 250  DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
              + + G      T N ++  YC +  P E   L      +G+ P   TYK L  A+ K 
Sbjct: 946  QLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKL 1005

Query: 310  NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAK 354
             M E  ++L + +       ++ F+   ++ F +S  G+ S + K
Sbjct: 1006 QMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNS--GNHSKAEK 1048



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 121/255 (47%), Gaps = 37/255 (14%)

Query: 81   RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140
            R KP++  +N +L+      +  +   +++ + E+ L PD  TYN ++  Y ++   +E 
Sbjct: 917  RFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEG 976

Query: 141  ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
             S++  M+    +P + T+  LI ++GK Q  ++ E++F+ L+ SKE             
Sbjct: 977  LSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLL-SKE------------- 1022

Query: 201  YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
                                K   SF  Y  ++ M+    N S+A ++   + + G +  
Sbjct: 1023 -------------------CKLDRSF--YHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPT 1061

Query: 261  VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKLL 319
            ++T++ ++ +Y  +G P EA+ + +N    G+   +  Y  +  AY K  +    +QKL+
Sbjct: 1062 IATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLM 1121

Query: 320  KRMEQNGIVPNKRFF 334
            + M+++G+ P+ R +
Sbjct: 1122 E-MKKDGLEPDHRIW 1135



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/398 (19%), Positives = 153/398 (38%), Gaps = 63/398 (15%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT---RDKAKAL 66
           D   Y+ +I + GK+GQ  LA  L+S+M+ SG  PD   Y  LI +       ++ A+ +
Sbjct: 398 DEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVM 457

Query: 67  AKAL----------------GYFQKMKGMER-----------CKPNIVTYNILLRACAQA 99
           ++ L                GY +  K +E             KP+ + Y+++L    + 
Sbjct: 458 SEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRF 517

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG-------MIKEME----------- 141
               +   L++E+      PD   Y  ++   GK         ++K+ME           
Sbjct: 518 NESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVIC 577

Query: 142 SVLSRMK-------------SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           S+L + +             S  C+ D      ++ SYG      +  ++   L      
Sbjct: 578 SILVKGECFDHAANMLRLAISQGCELDRENLLSILGSYGSSGRHLEARELLDFLREHSSG 637

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSFITYECIITMYGYCDNVSRARE 247
                  ++II   KA   G A   + K      +  SF  YE ++      +  + A +
Sbjct: 638 SHQLINEALIIMLCKAHQLGDALREYGKARDFGLFCGSFTMYESLLLCCEENELFAEASQ 697

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT-PDSSTYKLLYKAY 306
           IF ++   G +       +M+  YC  G P  A  L + +   G+   D S +  + +AY
Sbjct: 698 IFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQAEEKGLLFDDVSIHTGVIEAY 757

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            K  + +  + L+  + Q   + +++ +   +  +++S
Sbjct: 758 GKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAAS 795


>gi|449438016|ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Cucumis sativus]
          Length = 707

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 162/363 (44%), Gaps = 34/363 (9%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH-- 58
           M+ QR Y A   IY+ +I +  +  +   A  LF EM+   C+PD   YNALI AH    
Sbjct: 20  MKNQRNYCARNDIYNMMIRLHARHNRIDQARGLFFEMQKWRCKPDVETYNALINAHGRAG 79

Query: 59  -------------------TRDKAKALAKALGYFQKMK-GMERCK--------PNIVTYN 90
                              +R     L  A G     +  +  CK        P++VT+N
Sbjct: 80  QWRWATNIMEDMLRAAIPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHN 139

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM--K 148
           I+L A        +  + F+ +  + + PD  T N V+    K     +   + S M  K
Sbjct: 140 IVLSAYKSGAQYSKALSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREK 199

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
            ++C+PD++TF  +I  Y  R   +  + VF +++    KP + ++N++I  Y    +  
Sbjct: 200 RSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDK 259

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           +A  VF +M    + P  ++Y  +I+ +G     +RARE+FD + +      + + NA++
Sbjct: 260 EAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALM 319

Query: 269 EAYCMNG-LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +AY  NG LP   D+L E   + G+ P+  +   L  A  +   K  +  +L   E  GI
Sbjct: 320 DAYGSNGYLPQAVDILREMEQD-GIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGI 378

Query: 328 VPN 330
             N
Sbjct: 379 HLN 381



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 145/323 (44%), Gaps = 7/323 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI   G  G  R A+ +  +M ++G  PD   +N +++A+          +KAL YF
Sbjct: 103 FNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAY----KSGAQYSKALSYF 158

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE--SILAPDIYTYNGVMDAY 131
           + MKG    +P+  T NI++    + +   Q   +F  + E  S   PD+ T+  ++  Y
Sbjct: 159 ELMKGTN-IRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLY 217

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
              G I++ ++V S M +   KP+I+++N LI +Y       +   VF  +  S   P +
Sbjct: 218 SVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDV 277

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            ++ S+I  +G+++   +A  VF  M   K  P+ ++Y  ++  YG    + +A +I  E
Sbjct: 278 VSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILRE 337

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G    V ++  +L A    G     D +   +   G+  ++        +Y     
Sbjct: 338 MEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGE 397

Query: 312 KELVQKLLKRMEQNGIVPNKRFF 334
            E    L + ME     P+   F
Sbjct: 398 YEKAINLYRSMENKTTKPDSVTF 420



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 141/303 (46%), Gaps = 14/303 (4%)

Query: 32  WLFSEMRNSGCRPDPSVYNALITAHL-HTR-DKAKALAKALGYFQKMKGMERCKPNIVTY 89
           W+ ++ RN   R D  +YN +I  H  H R D+A+ L     +F+  K   RCKP++ TY
Sbjct: 19  WMKNQ-RNYCARND--IYNMMIRLHARHNRIDQARGL-----FFEMQKW--RCKPDVETY 68

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           N L+ A  +A        + +++  + + P   T+N +++A G  G  +E   V  +M  
Sbjct: 69  NALINAHGRAGQWRWATNIMEDMLRAAIPPSRSTFNNLINACGSCGNWREALRVCKKMTD 128

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
           N   PD++T N+++ +Y     + K    F+ +  +  +P   T N +I    K +  G+
Sbjct: 129 NGVGPDLVTHNIVLSAYKSGAQYSKALSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQ 188

Query: 210 AEYVFQKMTAMKYT--PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
           A  +F  M   +    P  +T+  II +Y     +   + +F  +   G    + + NA+
Sbjct: 189 AIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNAL 248

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           + AY  +G+  EA  +F+     G  PD  +Y  L   + ++      +++   M++N  
Sbjct: 249 ISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKC 308

Query: 328 VPN 330
            PN
Sbjct: 309 KPN 311



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 148/329 (44%), Gaps = 5/329 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI+     G  + A  +F EM+ SG  PD   Y +LI+    T  +++  A+A   F
Sbjct: 245 YNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLIS----TFGRSQQPARAREVF 300

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             MK   +CKPN+V+YN L+ A      + Q   + +E+ +  + P++ +   ++ A G+
Sbjct: 301 DMMK-RNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGR 359

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G    ++SVLS  +      + I  N  I SY     ++K   +++S+ +   KP   T
Sbjct: 360 FGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTKPDSVT 419

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           F  +I    +     +A   F++M  ++   S   Y  +I  Y     + +A  +F+ L 
Sbjct: 420 FTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLK 479

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    + T  AM+ AY  + +  +   L++      +  DS     L KA+ K N   
Sbjct: 480 GSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANNIQLDSIACSALMKAFNKGNQAS 539

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            V  L + M++ GI  N   F E L   S
Sbjct: 540 NVLILAEIMKEKGIPFNDANFFEMLSACS 568



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 135/297 (45%), Gaps = 11/297 (3%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMK-GMERCKPNIVT 88
           A+  F  M+ +  RPD +  N +I    H   K K   +A+  F  M+     C+P++VT
Sbjct: 154 ALSYFELMKGTNIRPDTTTLNIVI----HCLIKVKQYGQAIEIFSSMREKRSECRPDVVT 209

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           +  ++   +    ++   A+F  +    + P+I +YN ++ AY  +GM KE  SV   MK
Sbjct: 210 FTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMK 269

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
            +   PD++++  LI ++G+ Q   +  +VF  +  +K KP L ++N+++  YG      
Sbjct: 270 RSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLP 329

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL---GKDMKVSTLN 265
           +A  + ++M      P+ ++   I T+   C    +   I   LS     G  +     N
Sbjct: 330 QAVDILREMEQDGIHPNVVS---ICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACN 386

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           + + +Y   G   +A  L+ +  N    PDS T+ +L     + +  E      K M
Sbjct: 387 SAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEM 443



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 102/239 (42%), Gaps = 2/239 (0%)

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++  + ++  I +   +   M+  +CKPD+ T+N LI+++G+   +     + + ++
Sbjct: 33  YNMMIRLHARHNRIDQARGLFFEMQKWRCKPDVETYNALINAHGRAGQWRWATNIMEDML 92

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
            +   P+  TFN++I   G      +A  V +KMT     P  +T+  +++ Y      S
Sbjct: 93  RAAIPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYS 152

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN--SHNMGVTPDSSTYKL 301
           +A   F+ +         +TLN ++          +A  +F +         PD  T+  
Sbjct: 153 KALSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTS 212

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRS 360
           +   Y+     E  + +   M   GI PN   +   +  ++S     ++ S   ++ RS
Sbjct: 213 IIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRS 271



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/321 (19%), Positives = 140/321 (43%), Gaps = 11/321 (3%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           L+A  G+ GQ      + S     G   +    N+ I ++++  +      KA+  ++ M
Sbjct: 353 LLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGE----YEKAINLYRSM 408

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +  +  KP+ VT+ IL+  C +    ++    FKE+ +  +      Y+ ++ AY K G 
Sbjct: 409 EN-KTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQ 467

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           + + ES+ + +K + C PD++T+  +I++Y   + ++K+  +++ +  +  +      ++
Sbjct: 468 LVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANNIQLDSIACSA 527

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           ++  + K   Q     +  ++   K  P          M   C  +   R+  D ++ + 
Sbjct: 528 LMKAFNKGN-QASNVLILAEIMKEKGIP--FNDANFFEMLSACSILRDWRKATDLINLME 584

Query: 257 KD---MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
                + + T+N +L+    +G       LF     +G + + +TY +L K    A    
Sbjct: 585 PSFHLVSLGTINHLLQFLGKSGKTEIMIKLFYRFVALGSSVNINTYSILLKNLLSAGKWR 644

Query: 314 LVQKLLKRMEQNGIVPNKRFF 334
              ++L+ M   GI P+   +
Sbjct: 645 KYIEVLQWMNDAGIQPSHAMY 665



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 103/251 (41%), Gaps = 41/251 (16%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-----------LHTRD 61
           IYS +I    K+GQ   A  LF+ ++ SGC PD   Y A+I A+           L+   
Sbjct: 454 IYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEM 513

Query: 62  KAK----------ALAKA------------LGYFQKMKGMERCKPNIVTYNILLRACAQA 99
           +A           AL KA            L    K KG+     N      +L AC+  
Sbjct: 514 EANNIQLDSIACSALMKAFNKGNQASNVLILAEIMKEKGIPFNDANFFE---MLSACSIL 570

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
           R+  +   L   +  S     + T N ++   GK+G  + M  +  R  +     +I T+
Sbjct: 571 RDWRKATDLINLMEPSFHLVSLGTINHLLQFLGKSGKTEIMIKLFYRFVALGSSVNINTY 630

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY--VFQKM 217
           ++L+ +      + K  +V + +  +  +P+   +N+++     A+  G AEY  V ++ 
Sbjct: 631 SILLKNLLSAGKWRKYIEVLQWMNDAGIQPSHAMYNNILF---FAQHCGDAEYAAVIKER 687

Query: 218 TAMKYTPSFIT 228
             M+   S I+
Sbjct: 688 VGMRLCISLIS 698


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 150/319 (47%), Gaps = 5/319 (1%)

Query: 12  GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           G++  L +V+   G    A   FS+M+     P     N L    LH   K         
Sbjct: 64  GVFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGL----LHKFAKLGKTDGVKR 119

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           +F+ M G    KP + TYNI++    +  +++    LF+E+    L PD  TYN ++D Y
Sbjct: 120 FFKDMIGAGS-KPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGY 178

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           GK G + +       MKS  C+PD+IT+N LI+ + K     K  + ++ +  S  KP +
Sbjct: 179 GKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNV 238

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            ++++++  + K  +  +A   +  M  + + P+  TY  ++       N+S A  + +E
Sbjct: 239 VSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANE 298

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + ++G +  V T  A+++  C      EA+ LF      GV P+ ++Y  L   + KA  
Sbjct: 299 MLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKN 358

Query: 312 KELVQKLLKRMEQNGIVPN 330
            +   +LL  ++  GI P+
Sbjct: 359 MDRALELLNELKGRGIQPD 377



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 161/367 (43%), Gaps = 45/367 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K R  I DT  Y+ +I   GK G+    ++ F EM++  C PD   YN+LI        K
Sbjct: 160 KFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFC----K 215

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +  L K L ++++MK     KPN+V+Y+ L+ A  +   + Q    + ++      P+ +
Sbjct: 216 SGKLPKGLEFYREMK-QSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEF 274

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++DA  K G + +   + + M     + +++T+  LID     +   + E++F  +
Sbjct: 275 TYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKM 334

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--- 239
           + +   P L ++N++I  + KA+   +A  +  ++      P  + Y   I  +G C   
Sbjct: 335 VTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFI--WGLCGLE 392

Query: 240 ----------------------------------DNVSRAREIFDELSKLGKDMKVSTLN 265
                                              N +    + +E+ +L  ++ V T  
Sbjct: 393 KIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFC 452

Query: 266 AMLEAYCMNGLPTEA-DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
            +++  C N L ++A D     S++ G+ P+++ Y  +     K N  +    L ++M Q
Sbjct: 453 VLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQ 512

Query: 325 NGIVPNK 331
            G+VP++
Sbjct: 513 EGLVPDR 519



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 102/249 (40%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C P    ++ L         +++    F ++    + P   + NG++  + K G    ++
Sbjct: 59  CVPGFGVFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVK 118

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
                M     KP + T+N++ID   K    +    +F+ +      P   T+NSMI  Y
Sbjct: 119 RFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGY 178

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
           GK        Y F++M +M   P  ITY  +I  +     + +  E + E+ + G    V
Sbjct: 179 GKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNV 238

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            + + +++A+C   +  +A   + +   +G  P+  TY  L  A  K        +L   
Sbjct: 239 VSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANE 298

Query: 322 MEQNGIVPN 330
           M + G+  N
Sbjct: 299 MLEVGVEWN 307



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 107/244 (43%), Gaps = 2/244 (0%)

Query: 90  NILLRACAQARNVDQVNALFKELHES--ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           N +LR    ++   +   +F EL  +  +  P    ++ +       GM++E     S+M
Sbjct: 30  NSILREIVLSKAELEECDVFDELWSTRNVCVPGFGVFDALFSVLIDLGMLEEATQCFSKM 89

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           K  +  P   + N L+  + K    D +++ FK ++ +  KPT+ T+N MI    K    
Sbjct: 90  KRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDI 149

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
             A  +F++M      P  +TY  +I  YG    +      F+E+  +  +  V T N++
Sbjct: 150 EAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSL 209

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +  +C +G   +    +      G+ P+  +Y  L  A+ K +M +   K    M + G 
Sbjct: 210 INCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGH 269

Query: 328 VPNK 331
           VPN+
Sbjct: 270 VPNE 273



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 73/181 (40%), Gaps = 4/181 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           A+T IY+ L+    K G     + L  EM+          +  LI        K K ++K
Sbjct: 411 ANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLC----KNKLVSK 466

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A+ YF +M      +PN   Y  ++    +   V     LF+++ +  L PD   Y  +M
Sbjct: 467 AIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLM 526

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D   K G + E  ++  +M     K D++ +  L+  + +     K     + ++  +  
Sbjct: 527 DGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEIL 586

Query: 189 P 189
           P
Sbjct: 587 P 587



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           +  +Y+ +I  + K+ Q + A  LF +M   G  PD + Y +L+  +L    K   + +A
Sbjct: 483 NAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNL----KQGNMLEA 538

Query: 70  LGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           L    KM   GM   K +++ Y  L+   +Q   + +  +  +E+    + PD     GV
Sbjct: 539 LALRDKMAEIGM---KLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPDEVLCIGV 595

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQ 151
           +  + + G I E   + S +  +Q
Sbjct: 596 LKKHYELGCIDEAVGLQSYLMKHQ 619


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 151/319 (47%), Gaps = 9/319 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +S L+   GK+   +  M L  EM + G RP+  +Y   I   +  RD      K    +
Sbjct: 232 FSALMVASGKRRNIKTVMGLLEEMESMGLRPN--IYTYTICIRVLGRD-----GKIDEAY 284

Query: 74  QKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           + MK M+   C P++VTY +L+ A   AR +D    LF ++  S   PD  TY  ++D +
Sbjct: 285 RIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKF 344

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
              G + ++E + + M+++   PD++TF +L+++  K    ++   +  ++      P L
Sbjct: 345 SDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNL 404

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+N++I    +A     A  +F  M ++   P+  TY  +I  +G   +  +A E F++
Sbjct: 405 HTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEK 464

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G    +   NA L +    G   EA  +F    + G+ PDS TY ++ K Y+K   
Sbjct: 465 MKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQ 524

Query: 312 KELVQKLLKRMEQNGIVPN 330
            +   KLL  M +    P+
Sbjct: 525 VDEAIKLLSEMSKVQCEPD 543



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 147/322 (45%), Gaps = 5/322 (1%)

Query: 13   IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
            +Y+ LI    +     +A  LF EM+++GC PD   YN+LI AH     K+  + +    
Sbjct: 792  VYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAH----GKSGKINELFDL 847

Query: 73   FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            + +M     CKPN +TYN+++    ++  +D+   L+  L     +P   T+  ++D   
Sbjct: 848  YDEML-TRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLL 906

Query: 133  KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
            K+G + +   +   M    C+P+   +N+L++ YGK    D   + FK ++    +P L 
Sbjct: 907  KSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLK 966

Query: 193  TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            ++  ++     A     A + F+K+      P  + Y  +I   G       A  +F E+
Sbjct: 967  SYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEM 1026

Query: 253  SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
               G    + T N+++    + G+  EA  ++E    +G+ P+  TY  L + YT +   
Sbjct: 1027 QNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNS 1086

Query: 313  ELVQKLLKRMEQNGIVPNKRFF 334
            EL   + K+M   G  PN   F
Sbjct: 1087 ELAYGIYKKMMVGGCDPNTGTF 1108



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 144/307 (46%), Gaps = 5/307 (1%)

Query: 24  KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK 83
           +G  R A     +MR +G   +   YN LI    H   ++    +AL  +++M   E  K
Sbjct: 172 RGGLRQAPSALEKMREAGFVLNAYSYNGLI----HFLLQSGFCKEALEVYRRMVS-EGLK 226

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P++ T++ L+ A  + RN+  V  L +E+    L P+IYTY   +   G++G I E   +
Sbjct: 227 PSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRI 286

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           + RM  + C PD++T+ +LID+    +  D    +F  +  S  KP   T+ +++  +  
Sbjct: 287 MKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSD 346

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
                K E ++ +M A  Y P  +T+  ++        ++ A ++ D + K G    + T
Sbjct: 347 CGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHT 406

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N ++          +A  LF N  ++GV P + TY LL   + K+       +  ++M+
Sbjct: 407 YNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMK 466

Query: 324 QNGIVPN 330
             GI PN
Sbjct: 467 ARGIAPN 473



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 123/269 (45%)

Query: 62   KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            K K  + A   F K       KP +  YN+L+    +  NV+    LF+E+  +  APD 
Sbjct: 766  KHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDT 825

Query: 122  YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            +TYN ++DA+GK+G I E+  +   M +  CKP+ IT+N++I +  K    DK   ++ +
Sbjct: 826  FTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYN 885

Query: 182  LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
            L+     PT  TF  +I    K+     A  +F  M      P+   Y  ++  YG   +
Sbjct: 886  LVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGH 945

Query: 242  VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
            V  A E F  + K G    + +   +++  C+ G   +A   FE     G+ PD   Y L
Sbjct: 946  VDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNL 1005

Query: 302  LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +     ++   E    L   M+  GIVP+
Sbjct: 1006 MINGLGRSQRTEEALSLFHEMQNRGIVPD 1034



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 143/313 (45%), Gaps = 7/313 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+KQ   + +   Y+ LI+ + +  +   A+ LFS M + G  P    Y  LI  H    
Sbjct: 395 MRKQ-GVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYH---- 449

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K+    KAL  F+KMK      PNIV  N  L + A+   + +  A+F EL  S LAPD
Sbjct: 450 GKSGHPGKALETFEKMKA-RGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPD 508

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TYN +M  Y K G + E   +LS M   QC+PD+I  N LID+  K    ++  Q+F 
Sbjct: 509 SVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFC 568

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +      PT+ T+N ++   GK     KA  +F+ M     +P+ IT+  ++      D
Sbjct: 569 RMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKND 628

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            V  A ++F +++ +     V T N ++  +        A  LF     + + PD  T  
Sbjct: 629 EVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKL-LRPDHVTLC 687

Query: 301 LLYKAYTKANMKE 313
            L     K+   E
Sbjct: 688 TLLPGVIKSGQIE 700



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 141/318 (44%), Gaps = 9/318 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+  I V+G+ G+   A  +   M + GC PD   Y  LI A       A+ L  A+  F
Sbjct: 267 YTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALC----TARKLDDAMCLF 322

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KMK     KP+ VTY  LL   +   ++D+V  ++ E+     APD+ T+  +++A  K
Sbjct: 323 TKMKSSSH-KPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCK 381

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G I E   +L  M+     P++ T+N LI    +    D    +F ++     +PT  T
Sbjct: 382 AGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYT 441

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDE 251
           +  +I  +GK+   GKA   F+KM A    P+ +   C  ++Y   +   +  A+ +F+E
Sbjct: 442 YILLIDYHGKSGHPGKALETFEKMKARGIAPNIVA--CNASLYSLAEMGRLGEAKAMFNE 499

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           L   G      T N M++ Y   G   EA  L      +   PD      L     KA  
Sbjct: 500 LKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGR 559

Query: 312 KELVQKLLKRMEQNGIVP 329
            E   ++  RME+  + P
Sbjct: 560 VEEAWQMFCRMEEMNLAP 577



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 130/294 (44%), Gaps = 7/294 (2%)

Query: 10   DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
            DT  Y+ LI   GK G+      L+ EM   GC+P+   YN +I+  +    K+  L KA
Sbjct: 824  DTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLV----KSNRLDKA 879

Query: 70   LG-YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
            +  Y+  + G     P   T+  L+    ++  +D  + +F  +      P+   YN ++
Sbjct: 880  MDLYYNLVSG--DFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILV 937

Query: 129  DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            + YGK G +        RM     +PD+ ++ +L+D        D     F+ L  +   
Sbjct: 938  NGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLD 997

Query: 189  PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
            P L  +N MI   G+++   +A  +F +M      P   TY  +I   G    +  A +I
Sbjct: 998  PDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKI 1057

Query: 249  FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            ++EL  +G    V T NA++  Y ++G    A  +++     G  P++ T+  L
Sbjct: 1058 YEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 145/369 (39%), Gaps = 71/369 (19%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI-----TAHLHTRDKAK 64
           D   Y+ LI  +    +   AM LF++M++S  +PD   Y  L+       HL   +K  
Sbjct: 298 DVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIW 357

Query: 65  ALAKALGY-----------------------FQKMKGMER--CKPNIVTYNILLRACAQA 99
              +A GY                       F  +  M +    PN+ TYN L+    +A
Sbjct: 358 TEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRA 417

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM----------------------- 136
             +D    LF  +    + P  YTY  ++D +GK+G                        
Sbjct: 418 NRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVAC 477

Query: 137 ------------IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
                       + E +++ + +KS+   PD +T+N+++  Y K    D+  ++   +  
Sbjct: 478 NASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSK 537

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
            + +P +   NS+I    KA    +A  +F +M  M   P+ +TY  ++   G    + +
Sbjct: 538 VQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQK 597

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL---LFENSHNMGVTPDSSTYKL 301
           A ++F+ ++  G      T N +L+  C N    E DL   +F     M   PD  T+  
Sbjct: 598 AVQLFESMNGHGCSPNTITFNTLLDCLCKN---DEVDLALKMFYKMTTMNCRPDVLTFNT 654

Query: 302 LYKAYTKAN 310
           +   + K N
Sbjct: 655 IIHGFIKQN 663



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 116/270 (42%), Gaps = 13/270 (4%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           N  +YN L+    Q+    +   +++ +    L P + T++ +M A GK   IK +  +L
Sbjct: 193 NAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLL 252

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             M+S   +P+I T+ + I   G+    D+  ++ K +      P + T+  +I     A
Sbjct: 253 EEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTA 312

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
           R    A  +F KM +  + P  +TY  ++  +  C ++ +  +I+ E+   G    V T 
Sbjct: 313 RKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTF 372

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
             ++ A C  G   EA  L +     GV P+  TY  L     +AN  +    L   ME 
Sbjct: 373 TILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMES 432

Query: 325 NGIVPNKRFFL-------------EALETF 341
            G+ P    ++             +ALETF
Sbjct: 433 LGVEPTAYTYILLIDYHGKSGHPGKALETF 462



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 84/392 (21%), Positives = 153/392 (39%), Gaps = 84/392 (21%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+A +GK+GQ + A+ LF  M   GC P+   +N L    L    K   +  AL  F
Sbjct: 582 YNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTL----LDCLCKNDEVDLALKMF 637

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM  M  C+P+++T+N ++    +   +     LF ++ + +L PD  T   ++    K
Sbjct: 638 YKMTTMN-CRPDVLTFNTIIHGFIKQNQIKNAIWLFHQM-KKLLRPDHVTLCTLLPGVIK 695

Query: 134 NGMIKE------------------------MESVLSRMKSNQ-------------CKPDI 156
           +G I++                        M  +L+   + +             CK D 
Sbjct: 696 SGQIEDAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICKDDS 755

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE---KPTLPTFNSMIINYGKARLQGKAEYV 213
           +   + I    K +       VF     +KE   KPTL  +N +I  + +      A  +
Sbjct: 756 VLIPI-IKVLCKHKKTSVARNVFVKF--TKELGVKPTLKVYNLLIDGFLEVHNVEVAWNL 812

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL--------------------- 252
           F++M +    P   TY  +I  +G    ++   +++DE+                     
Sbjct: 813 FEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVK 872

Query: 253 -SKLGKDMKV-------------STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
            ++L K M +              T   +++    +G   +A  +F+   + G  P+S+ 
Sbjct: 873 SNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAI 932

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y +L   Y K    +   +  KRM + GI P+
Sbjct: 933 YNILVNGYGKLGHVDTACEFFKRMVKEGIRPD 964



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 9/124 (7%)

Query: 3    KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI--TAHLHTR 60
            KQ     D   Y+ +I  +G+  +T  A+ LF EM+N G  PD   YN+LI     +   
Sbjct: 992  KQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMI 1051

Query: 61   DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++A  + + L +     G+   KPN+ TYN L+R    + N +    ++K++      P+
Sbjct: 1052 EEAGKIYEELQFI----GL---KPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPN 1104

Query: 121  IYTY 124
              T+
Sbjct: 1105 TGTF 1108


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 144/318 (45%), Gaps = 5/318 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ LI    K G       LF +M       +   Y  LI        K   +      
Sbjct: 188 VYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIE----L 243

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           ++KMK +    PN+ TYN ++  C     ++    LF E+ E  +A ++ TYN ++    
Sbjct: 244 YEKMK-LTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLC 302

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           +   + E E ++ RMK +   P++I++N LID Y      DK   +F  +  S + P+L 
Sbjct: 303 QERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLA 362

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N +I  + +A+       + ++M A   +PS +TY  ++      DN+ +A +I+  +
Sbjct: 363 TYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSM 422

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            K G    +     ++   C+ G   EA  LF++   M + P+   Y  +   Y K    
Sbjct: 423 EKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSS 482

Query: 313 ELVQKLLKRMEQNGIVPN 330
               +LLK M +NG+VPN
Sbjct: 483 YRALRLLKEMGENGMVPN 500



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 137/304 (45%), Gaps = 10/304 (3%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A++  ++M   G  P  + +N L+   +    K+    KA   F + KG    K ++ ++
Sbjct: 101 ALFYXNQMIGRGLVPGSNTFNNLLILLI----KSNFFEKAWRVFNETKG--NVKLDVYSF 154

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
            I+++ C +   +D+   +  ++ E  L+P++  Y  ++D   KNG I+  + +  +M  
Sbjct: 155 GIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGE 214

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
                +  T+ +LI+ + K        ++++ +  +   P + T+NSMI           
Sbjct: 215 LDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNN 274

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAM 267
           A  +F +M       + +TY  +I   G C    V  A  +   + + G    + + N +
Sbjct: 275 AFELFDEMRERGVACNVVTYNTLIG--GLCQERRVLEAERLMCRMKRDGLSPNLISYNTL 332

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           ++ YC  G   +A  LF    + G +P  +TY +L   +++A     V  +++ ME  G+
Sbjct: 333 IDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGL 392

Query: 328 VPNK 331
            P+K
Sbjct: 393 SPSK 396



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 130/307 (42%), Gaps = 48/307 (15%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--LHTR 60
           ++R    +   Y+ LI  + ++ +   A  L   M+  G  P+   YN LI  +  +   
Sbjct: 283 RERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNL 342

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           DKA +L      F +MK   +  P++ TYNIL+   ++A+N   V  + +E+    L+P 
Sbjct: 343 DKASSL------FNQMKSSGQ-SPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPS 395

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TY  +MDA  ++  I++   + S M+      DI  + +LI          +  ++FK
Sbjct: 396 KVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFK 455

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           SL     KP    +N+MI                                     YGYC 
Sbjct: 456 SLDEMHLKPNDVIYNTMI-------------------------------------YGYCK 478

Query: 241 NVS--RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             S  RA  +  E+ + G    V++ N+ +   C +   TEA++L ++   +G+ P  S 
Sbjct: 479 EGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEVLLKDMIELGLKPSISI 538

Query: 299 YKLLYKA 305
           + ++ KA
Sbjct: 539 WNMISKA 545



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 145/335 (43%), Gaps = 19/335 (5%)

Query: 33  LFSEMRNSGCRPDPS---VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           LF E+        P+   ++ A+I AH+    +++   +AL Y  +M G     P   T+
Sbjct: 66  LFHELTQPHLDSFPTHVLIHEAIINAHV----RSQLPEQALFYXNQMIG-RGLVPGSNTF 120

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           N LL    ++   ++   +F E   ++   D+Y++  ++    + G + +   VL +M+ 
Sbjct: 121 NNLLILLIKSNFFEKAWRVFNETKGNV-KLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEE 179

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
               P+++ +  LID   K    ++ +Q+F  +          T+  +I  + K  L+  
Sbjct: 180 MGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKD 239

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
              +++KM      P+  TY  +I        ++ A E+FDE+ + G    V T N ++ 
Sbjct: 240 GIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIG 299

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             C      EA+ L       G++P+  +Y  L   Y      +    L  +M+ +G  P
Sbjct: 300 GLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSP 359

Query: 330 NKRFFLEALETFSSSLAG---SQSGSAKTDLTRSL 361
                  +L T++  +AG   +++ +  TD+ R +
Sbjct: 360 -------SLATYNILIAGFSEAKNSAGVTDMVREM 387


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 149/327 (45%), Gaps = 5/327 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R  + D   Y+ +IA + K      AM + + M  +G  PD   YN++    LH    +
Sbjct: 224 DRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSI----LHGYCSS 279

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
               +A+G+ +KM+  +  +P++VTY++L+    +     +   +F  + +  L P+I T
Sbjct: 280 GQPKEAIGFLKKMRS-DGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITT 338

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++  Y   G + EM  +L  M  N   PD   F++LI +Y K+   D+   VF  + 
Sbjct: 339 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMR 398

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                P   T+ ++I    K+     A   F++M     +P  I Y  +I     C+   
Sbjct: 399 QQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWE 458

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           RA E+  E+   G  +     N++++++C  G   E++ LFE    +GV P+  TY  L 
Sbjct: 459 RAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLI 518

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
             Y  A   +   KLL  M   G+ PN
Sbjct: 519 NGYCLAGKMDEAMKLLSGMVSVGLKPN 545



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 152/321 (47%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  ++S LI    K+G+   AM +FS+MR  G  P+   Y A+I        K+  +  A
Sbjct: 370 DHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILC----KSGRVEDA 425

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           + YF++M   E   P  + YN L+         ++   L  E+ +  +  +   +N ++D
Sbjct: 426 MLYFEQMID-EGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIID 484

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           ++ K G + E E +   M     KP++IT+N LI+ Y      D+  ++   ++    KP
Sbjct: 485 SHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKP 544

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T++++I  Y K      A  +F++M +   +P  ITY  I+         + A+E++
Sbjct: 545 NTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 604

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             +++ G  +++ST N +L   C N L  +A  +F+N   M +  ++ T+ ++  A  K 
Sbjct: 605 VRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKV 664

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +  + L      NG+VPN
Sbjct: 665 GRNDEAKDLFVAFSSNGLVPN 685



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 138/324 (42%), Gaps = 7/324 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  LI    + G+  L       +   G R D   +  L+      +  + A+   
Sbjct: 86  DLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIV 145

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNAL--FKELHESILAPDIYTYNG 126
           L    ++     C PN+ +YNILL+  C + R+ + +  L    +       PD+ +Y  
Sbjct: 146 LRRMTELG----CIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTT 201

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           V++ + K G   +  S    M      PD++T+N +I +  K QA DK  +V  +++ + 
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNG 261

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P   T+NS++  Y  +    +A    +KM +    P  +TY  ++           AR
Sbjct: 262 VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEAR 321

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           +IFD ++K G   +++T   +L+ Y   G   E   L +     G+ PD   + +L  AY
Sbjct: 322 KIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAY 381

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K    +    +  +M Q G+ PN
Sbjct: 382 AKQGKVDQAMLVFSKMRQQGLNPN 405



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 135/299 (45%), Gaps = 17/299 (5%)

Query: 44  PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNV 102
           PD   Y  LI             A ALG   K KG    + + + +  LL+  CA  R  
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFA-ALGNVIK-KGF---RVDAIAFTPLLKGLCADKRTS 139

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ---CKPDIITF 159
           D ++ + + + E    P++++YN ++         +E   +L  M  ++     PD++++
Sbjct: 140 DAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 199

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
             +I+ + K    DK    +  ++     P + T+NS+I    KA+   KA  V   M  
Sbjct: 200 TTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVK 259

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL---GKDMKVSTLNAMLEAYCMNGL 276
               P  +TY  I  ++GYC +  + +E    L K+   G +  V T + +++  C NG 
Sbjct: 260 NGVMPDCMTYNSI--LHGYCSS-GQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGR 316

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKRMEQNGIVPNKRFF 334
             EA  +F++    G+ P+ +TY  L + Y TK  + E+   LL  M +NGI P+   F
Sbjct: 317 CMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEM-HGLLDLMVRNGIHPDHYVF 374



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 143/360 (39%), Gaps = 48/360 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-------------LHTR 60
           Y  +I ++ K G+   AM  F +M + G  P   VYN+LI                L   
Sbjct: 409 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 468

Query: 61  DKAKAL---------------AKALGYFQKMKGMER--CKPNIVTYNILLRACAQARNVD 103
           D+   L                + +   +  + M R   KPN++TYN L+     A  +D
Sbjct: 469 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMD 528

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +   L   +    L P+  TY+ +++ Y K   +++   +   M+S+   PDIIT+N+++
Sbjct: 529 EAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIIL 588

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
               + +     ++++  +  S  +  L T+N ++    K +L   A  +FQ +  M   
Sbjct: 589 QGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLK 648

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
               T+  +I           A+++F   S  G      T   M E     GL  E D L
Sbjct: 649 LEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQL 708

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN------GIVPNKRFFLEA 337
           F +  + G T DS                 +V++LL+R E         ++  K F LEA
Sbjct: 709 FLSMEDNGCTVDSGMLNF------------IVRELLQRGEITRAGTYLSMIDEKHFSLEA 756



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 88/211 (41%), Gaps = 16/211 (7%)

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY-G 202
           ++R  +++  PD+ T+ +LI    +    D       +++    +     F  ++     
Sbjct: 75  MARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 134

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM--- 259
             R     + V ++MT +   P+  +Y   I + G CD  +R++E  + L  +  D    
Sbjct: 135 DKRTSDAMDIVLRRMTELGCIPNVFSYN--ILLKGLCDE-NRSQEALELLHMMADDRGGG 191

Query: 260 ---KVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKAYTKANMKE 313
               V +   ++  +   G   ++D  +   H M   G+ PD  TY  +  A  KA   +
Sbjct: 192 SPPDVVSYTTVINGFFKEG---DSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMD 248

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
              ++L  M +NG++P+   +   L  + SS
Sbjct: 249 KAMEVLNTMVKNGVMPDCMTYNSILHGYCSS 279


>gi|15226907|ref|NP_181058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100538|sp|O82178.1|PP186_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g35130
 gi|3668091|gb|AAC61823.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253974|gb|AEC09068.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 147/319 (46%), Gaps = 6/319 (1%)

Query: 13  IYSKLI-AVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           +Y+  I  +M +KG T  A+ +F  M+   C+P    YN +I  +     KA     +  
Sbjct: 230 VYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLY----GKASKSYMSWK 285

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            + +M+   +CKPNI TY  L+ A A+    ++   +F++L E  L PD+Y YN +M++Y
Sbjct: 286 LYCEMRS-HQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESY 344

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G       + S M+   C+PD  ++N+++D+YG+       E VF+ +      PT+
Sbjct: 345 SRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTM 404

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            +   ++  Y KAR   K E + ++M+     P       ++ +YG     ++  +I  E
Sbjct: 405 KSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAE 464

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +        +ST N ++  Y   G     + LF         PD  T+     AY++  +
Sbjct: 465 MENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKL 524

Query: 312 KELVQKLLKRMEQNGIVPN 330
                ++ + M  +G  P+
Sbjct: 525 YVKCLEVFEEMIDSGCAPD 543



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 138/261 (52%), Gaps = 8/261 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ L+    + G    A  +FS M++ GC PD + YN ++ A+     +A   + A
Sbjct: 333 DVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAY----GRAGLHSDA 388

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F++MK +    P + ++ +LL A ++AR+V +  A+ KE+ E+ + PD +  N +++
Sbjct: 389 EAVFEEMKRL-GIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLN 447

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YG+ G   +ME +L+ M++  C  DI T+N+LI+ YGK    +++E++F  L     +P
Sbjct: 448 LYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRP 507

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ S I  Y + +L  K   VF++M      P   T + +++    C +  +  ++ 
Sbjct: 508 DVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSA---CSSEEQVEQVT 564

Query: 250 DELSKLGKDMKVSTLNAMLEA 270
             L  + K + VS+L   L A
Sbjct: 565 SVLRTMHKGVTVSSLVPKLMA 585



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 134/266 (50%), Gaps = 4/266 (1%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P+++ +N+L+ A  Q     +  +L+ +L ES   P   TY  ++ AY   G+I+  E 
Sbjct: 152 QPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEV 211

Query: 143 VLSRMKSNQCKPDII---TFNLLIDSYGKRQA-FDKMEQVFKSLMHSKEKPTLPTFNSMI 198
           VL  M+++   P  I    +N  I+   KR+   ++   VF+ +   + KPT  T+N MI
Sbjct: 212 VLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMI 271

Query: 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 258
             YGKA     +  ++ +M + +  P+  TY  ++  +       +A EIF++L + G +
Sbjct: 272 NLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLE 331

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
             V   NA++E+Y   G P  A  +F    +MG  PD ++Y ++  AY +A +    + +
Sbjct: 332 PDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAV 391

Query: 319 LKRMEQNGIVPNKRFFLEALETFSSS 344
            + M++ GI P  +  +  L  +S +
Sbjct: 392 FEEMKRLGIAPTMKSHMLLLSAYSKA 417


>gi|334184699|ref|NP_001189682.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330253975|gb|AEC09069.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 613

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 147/319 (46%), Gaps = 6/319 (1%)

Query: 13  IYSKLI-AVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           +Y+  I  +M +KG T  A+ +F  M+   C+P    YN +I  +     KA     +  
Sbjct: 252 VYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLY----GKASKSYMSWK 307

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            + +M+   +CKPNI TY  L+ A A+    ++   +F++L E  L PD+Y YN +M++Y
Sbjct: 308 LYCEMRS-HQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESY 366

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G       + S M+   C+PD  ++N+++D+YG+       E VF+ +      PT+
Sbjct: 367 SRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTM 426

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            +   ++  Y KAR   K E + ++M+     P       ++ +YG     ++  +I  E
Sbjct: 427 KSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAE 486

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +        +ST N ++  Y   G     + LF         PD  T+     AY++  +
Sbjct: 487 MENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKL 546

Query: 312 KELVQKLLKRMEQNGIVPN 330
                ++ + M  +G  P+
Sbjct: 547 YVKCLEVFEEMIDSGCAPD 565



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 138/261 (52%), Gaps = 8/261 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ L+    + G    A  +FS M++ GC PD + YN ++ A+     +A   + A
Sbjct: 355 DVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAY----GRAGLHSDA 410

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F++MK +    P + ++ +LL A ++AR+V +  A+ KE+ E+ + PD +  N +++
Sbjct: 411 EAVFEEMKRL-GIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLN 469

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YG+ G   +ME +L+ M++  C  DI T+N+LI+ YGK    +++E++F  L     +P
Sbjct: 470 LYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRP 529

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ S I  Y + +L  K   VF++M      P   T + +++    C +  +  ++ 
Sbjct: 530 DVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSA---CSSEEQVEQVT 586

Query: 250 DELSKLGKDMKVSTLNAMLEA 270
             L  + K + VS+L   L A
Sbjct: 587 SVLRTMHKGVTVSSLVPKLMA 607



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 134/266 (50%), Gaps = 4/266 (1%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P+++ +N+L+ A  Q     +  +L+ +L ES   P   TY  ++ AY   G+I+  E 
Sbjct: 174 QPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEV 233

Query: 143 VLSRMKSNQCKPDII---TFNLLIDSYGKRQA-FDKMEQVFKSLMHSKEKPTLPTFNSMI 198
           VL  M+++   P  I    +N  I+   KR+   ++   VF+ +   + KPT  T+N MI
Sbjct: 234 VLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMI 293

Query: 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 258
             YGKA     +  ++ +M + +  P+  TY  ++  +       +A EIF++L + G +
Sbjct: 294 NLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLE 353

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
             V   NA++E+Y   G P  A  +F    +MG  PD ++Y ++  AY +A +    + +
Sbjct: 354 PDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAV 413

Query: 319 LKRMEQNGIVPNKRFFLEALETFSSS 344
            + M++ GI P  +  +  L  +S +
Sbjct: 414 FEEMKRLGIAPTMKSHMLLLSAYSKA 439


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Glycine max]
          Length = 1113

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 150/309 (48%), Gaps = 7/309 (2%)

Query: 27   TRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI 86
            T  A+ LF EM+N+GC P+   YN L+ AH     K+K + +    + +M     CKPNI
Sbjct: 804  TEAALKLFVEMKNAGCCPNIFTYNLLLDAH----GKSKRIDELFELYNEML-CRGCKPNI 858

Query: 87   VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 146
            +T+NI++ A  ++ ++++   L+ E+     +P   TY  ++    K G  +E   +   
Sbjct: 859  ITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEE 918

Query: 147  MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI-INYGKAR 205
            M   QCKP+   +N+LI+ +GK    +    +FK ++    +P L ++  ++   +   R
Sbjct: 919  MPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGR 978

Query: 206  LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
            +     Y F+++      P  ++Y  +I   G    +  A  +F E+   G   ++ T N
Sbjct: 979  VDDAVHY-FEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYN 1037

Query: 266  AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            A++  +   G+  +A  +FE    MG+ P+  TY  L + ++K+  K+    + K+M   
Sbjct: 1038 ALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIV 1097

Query: 326  GIVPNKRFF 334
            G  PN   F
Sbjct: 1098 GCSPNAGTF 1106



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 145/317 (45%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  +   +  KG  R A +   +MR +G   +   YN LI   L    +     +AL  +
Sbjct: 160 YLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLL----QPGFCKEALKVY 215

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M   E  KP++ TY+ L+ A  + R+   +  L +E+    L P+IYTY   +   G+
Sbjct: 216 KRMIS-EGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGR 274

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G I +   +L  M+   C PD++T+ +LID+       DK ++++  +  S  KP L T
Sbjct: 275 AGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVT 334

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + +++  +G        +  + +M A  Y P  +TY  ++        V +A ++ D + 
Sbjct: 335 YITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMR 394

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    + T N ++          EA  LF N  ++GV P + +Y L    Y K    E
Sbjct: 395 VRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPE 454

Query: 314 LVQKLLKRMEQNGIVPN 330
                 ++M++ GI+P+
Sbjct: 455 KALDTFEKMKKRGIMPS 471



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 157/367 (42%), Gaps = 38/367 (10%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D   Y+ L+  + K G+   A  +   MR  G  P+   YN LI+  L+ R   +AL
Sbjct: 363 YAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEAL 422

Query: 67  A-------------------------------KALGYFQKMKGMERCKPNIVTYNILLRA 95
                                           KAL  F+KMK      P+I   N  L +
Sbjct: 423 ELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMK-KRGIMPSIAACNASLYS 481

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
            A+   + +   +F ++H   L+PD  TYN +M  Y K G I +   +L+ M S  C+PD
Sbjct: 482 LAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPD 541

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
           II  N LID+  K    D+  Q+F  L   K  PT+ T+N +I   GK     KA  +F 
Sbjct: 542 IIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFG 601

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            M      P+ +T+  ++      D V  A ++F  ++ +     V T N ++      G
Sbjct: 602 SMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEG 661

Query: 276 LPTEADLLFENSHNMG--VTPDSST-YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
               A   F   H M   ++PD  T Y LL        +++ ++ +++ + Q+G+  + +
Sbjct: 662 ---RAGYAFWFYHQMKKFLSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQ 718

Query: 333 FFLEALE 339
            + E +E
Sbjct: 719 VWGELME 725



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 136/313 (43%), Gaps = 5/313 (1%)

Query: 39   NSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
            NS C+ D      LI   +    K K    A   F K        P   +YN L+     
Sbjct: 746  NSICQDD-----NLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLG 800

Query: 99   ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
                +    LF E+  +   P+I+TYN ++DA+GK+  I E+  + + M    CKP+IIT
Sbjct: 801  CNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIIT 860

Query: 159  FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
             N++I +  K  + +K   ++  ++     PT  T+  +I    KA    +A  +F++M 
Sbjct: 861  HNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMP 920

Query: 219  AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
              +  P+   Y  +I  +G   NV+ A ++F  + K G    + +   ++E   M G   
Sbjct: 921  DYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVD 980

Query: 279  EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
            +A   FE     G+ PD+ +Y L+     K+   E    L   M+  GI P    +   +
Sbjct: 981  DAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALI 1040

Query: 339  ETFSSSLAGSQSG 351
              F ++    Q+G
Sbjct: 1041 LHFGNAGMVDQAG 1053



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 120/243 (49%), Gaps = 5/243 (2%)

Query: 14   YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
            ++ +I+ + K      A+ L+ E+ +    P P  Y  LI   L    KA    +A+  F
Sbjct: 861  HNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLL----KAGRSEEAMKIF 916

Query: 74   QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++M   + CKPN   YNIL+    +A NV+    LFK + +  + PD+ +Y  +++    
Sbjct: 917  EEMPDYQ-CKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFM 975

Query: 134  NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
             G + +       +K     PD +++NL+I+  GK +  ++   +F  + +    P L T
Sbjct: 976  TGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYT 1035

Query: 194  FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            +N++I+++G A +  +A  +F+++  M   P+  TY  +I  +    N  RA  +F ++ 
Sbjct: 1036 YNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMM 1095

Query: 254  KLG 256
             +G
Sbjct: 1096 IVG 1098



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 130/325 (40%), Gaps = 40/325 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  L++  G  G        +SEM   G  PD   Y  L+ A      K+  + +A
Sbjct: 331 DLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALC----KSGKVDQA 386

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                 M+ +    PN+ TYN L+      R +D+   LF  +    +AP  Y+Y   +D
Sbjct: 387 FDMLDVMR-VRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFID 445

Query: 130 AYGK-----------------------------------NGMIKEMESVLSRMKSNQCKP 154
            YGK                                    G I+E + + + + +    P
Sbjct: 446 YYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSP 505

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           D +T+N+++  Y K    DK  ++   ++    +P +   NS+I    KA    +A  +F
Sbjct: 506 DSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMF 565

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
            ++  +K  P+ +TY  +IT  G    + +A ++F  + + G      T NA+L+  C N
Sbjct: 566 GRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKN 625

Query: 275 GLPTEADLLFENSHNMGVTPDSSTY 299
                A  +F     M  +PD  TY
Sbjct: 626 DAVDLALKMFCRMTIMNCSPDVLTY 650



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 145/351 (41%), Gaps = 30/351 (8%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA-----------HLHTRDK 62
           Y+  I V+G+ G+   A  +   M + GC PD   Y  LI A            L+T+ +
Sbjct: 265 YTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMR 324

Query: 63  AKA----------LAKALGYFQKMKGMERC---------KPNIVTYNILLRACAQARNVD 103
           A +          L    G +  ++ ++R           P++VTY IL+ A  ++  VD
Sbjct: 325 ASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVD 384

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           Q   +   +    + P+++TYN ++        + E   + + M+S    P   ++ L I
Sbjct: 385 QAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFI 444

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           D YGK    +K    F+ +      P++   N+ + +  +     +A+ +F  +     +
Sbjct: 445 DYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLS 504

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
           P  +TY  ++  Y     + +A ++  E+   G +  +  +N++++     G   EA  +
Sbjct: 505 PDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQM 564

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           F    ++ + P   TY +L     K         L   M+++G  PN   F
Sbjct: 565 FGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTF 615



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 110/264 (41%), Gaps = 9/264 (3%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           PN  TY  + +A +    + Q      ++ ++    + Y+YNG++    + G  KE   V
Sbjct: 157 PN--TYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKV 214

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
             RM S   KP + T++ L+ + G+R+    +  + + +     +P + T+   I   G+
Sbjct: 215 YKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGR 274

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A     A  + + M      P  +TY  +I        + +A+E++ ++        + T
Sbjct: 275 AGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVT 334

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
              ++  +   G        +      G  PD  TY +L +A  K+   +    +L  M 
Sbjct: 335 YITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMR 394

Query: 324 QNGIVPNKRFFLEALETFSSSLAG 347
             GIVPN       L T+++ ++G
Sbjct: 395 VRGIVPN-------LHTYNTLISG 411



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 3    KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
            K R    +   Y+ LI   G  G    A  +F E++  G  P+   YNALI  H  + +K
Sbjct: 1025 KNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNK 1084

Query: 63   AKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 96
             +A +     F+KM  +  C PN  T+  L   C
Sbjct: 1085 DRAFS----VFKKMM-IVGCSPNAGTFAQLPNKC 1113


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 144/318 (45%), Gaps = 5/318 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ LI    K G       LF +M       +   Y  LI        K   +      
Sbjct: 201 VYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIE----L 256

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           ++KMK +    PN+ TYN ++  C     ++    LF E+ E  +A ++ TYN ++    
Sbjct: 257 YEKMK-LTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLC 315

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           +   + E E ++ RMK +   P++I++N LID Y      DK   +F  +  S + P+L 
Sbjct: 316 QERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLA 375

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N +I  + +A+       + ++M A   +PS +TY  ++      DN+ +A +I+  +
Sbjct: 376 TYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSM 435

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            K G    +     ++   C+ G   EA  LF++   M + P+   Y  +   Y K    
Sbjct: 436 EKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSS 495

Query: 313 ELVQKLLKRMEQNGIVPN 330
               +LLK M +NG+VPN
Sbjct: 496 YRALRLLKEMGENGMVPN 513



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 138/304 (45%), Gaps = 10/304 (3%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A++ F++M   G  P  + +N L+   +    K+    KA   F + KG    K ++ ++
Sbjct: 114 ALFYFNQMIGRGLVPGSNTFNNLLILLI----KSNFFEKAWRVFNETKG--NVKLDVYSF 167

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
            I+++ C +   +D+   +  ++ E  L+P++  Y  ++D   KNG I+  + +  +M  
Sbjct: 168 GIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGE 227

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
                +  T+ +LI+ + K        ++++ +  +   P + T+NSMI           
Sbjct: 228 LDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNN 287

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAM 267
           A  +F +M       + +TY  +I   G C    V  A  +   + + G    + + N +
Sbjct: 288 AFELFDEMRERGVACNVVTYNTLIG--GLCQERRVLEAERLMCRMKRDGLSPNLISYNTL 345

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           ++ YC  G   +A  LF    + G +P  +TY +L   +++A     V  +++ ME  G+
Sbjct: 346 IDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGL 405

Query: 328 VPNK 331
            P+K
Sbjct: 406 SPSK 409



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 131/307 (42%), Gaps = 48/307 (15%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--LHTR 60
           ++R    +   Y+ LI  + ++ +   A  L   M+  G  P+   YN LI  +  +   
Sbjct: 296 RERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNL 355

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           DKA +L      F +MK   +  P++ TYNIL+   ++A+N   V  + +E+    L+P 
Sbjct: 356 DKASSL------FNQMKSSGQ-SPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPS 408

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TY  +MDA  ++  I++   + S M+      DI  + +LI          +  ++FK
Sbjct: 409 KVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFK 468

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           SL     KP    +N+MI                                     YGYC 
Sbjct: 469 SLDEMHLKPNDVIYNTMI-------------------------------------YGYCK 491

Query: 241 NVS--RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             S  RA  +  E+ + G    V++ N+ ++  C +   TEA++L ++   +G+ P  S 
Sbjct: 492 EGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVLLKDMIELGLKPSISI 551

Query: 299 YKLLYKA 305
           + ++ KA
Sbjct: 552 WNMISKA 558



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 146/335 (43%), Gaps = 19/335 (5%)

Query: 33  LFSEMRNSGCRPDPS---VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           LF E+        P+   ++ A+I AH+    +++   +AL YF +M G     P   T+
Sbjct: 79  LFHELTQPHLDSFPTHVLIHEAIINAHV----RSQLPEQALFYFNQMIG-RGLVPGSNTF 133

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           N LL    ++   ++   +F E   ++   D+Y++  ++    + G + +   VL +M+ 
Sbjct: 134 NNLLILLIKSNFFEKAWRVFNETKGNV-KLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEE 192

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
               P+++ +  LID   K    ++ +Q+F  +          T+  +I  + K  L+  
Sbjct: 193 MGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKD 252

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
              +++KM      P+  TY  +I        ++ A E+FDE+ + G    V T N ++ 
Sbjct: 253 GIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIG 312

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             C      EA+ L       G++P+  +Y  L   Y      +    L  +M+ +G  P
Sbjct: 313 GLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSP 372

Query: 330 NKRFFLEALETFSSSLAG---SQSGSAKTDLTRSL 361
                  +L T++  +AG   +++ +  TD+ R +
Sbjct: 373 -------SLATYNILIAGFSEAKNSAGVTDMVREM 400


>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g18110, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 1270; Flags: Precursor
 gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1440

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 149/322 (46%), Gaps = 10/322 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ ++ V  + G+   A  L   MR  GC PD   +N LI A L +      LA  L  
Sbjct: 227 VYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLD 286

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +  G+   +P+ +TYN LL AC++  N+D    +F+++      PD++TYN ++  YG
Sbjct: 287 MVRNSGL---RPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYG 343

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + G+  E E +   ++     PD +T+N L+ ++ + +  +K+++V++ +          
Sbjct: 344 RCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEM 403

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMK----YTPSFITYECIITMYGYCDNVSRAREI 248
           T+N++I  YGK   QG+ +   Q    MK      P  ITY  +I   G  +    A  +
Sbjct: 404 TYNTIIHMYGK---QGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAAL 460

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             E+  +G    + T +A++  Y   G   EA+  F      G  PD+  Y ++     +
Sbjct: 461 MSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLR 520

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
            N       L + M  +G  P+
Sbjct: 521 GNETRKAWGLYRDMISDGHTPS 542



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 161/338 (47%), Gaps = 25/338 (7%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSV------YNALITAHL 57
           + W+  +  + + ++ V+G+  Q  LA+ +F+       R +P+V      YNA++  + 
Sbjct: 184 RHWHSPNARMVAAILGVLGRWNQESLAVEIFT-------RAEPTVGDRVQVYNAMMGVYS 236

Query: 58  HTR--DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV--DQVNALFKELH 113
            +    KA+ L  A+    + +G   C P+++++N L+ A  ++  +  +    L   + 
Sbjct: 237 RSGKFSKAQELVDAM----RQRG---CVPDLISFNTLINARLKSGGLTPNLAVELLDMVR 289

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
            S L PD  TYN ++ A  ++  +     V   M++++C+PD+ T+N +I  YG+     
Sbjct: 290 NSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAA 349

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           + E++F  L      P   T+NS++  + + R   K + V+Q+M  M +    +TY  II
Sbjct: 350 EAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTII 409

Query: 234 TMYGYCDNVSRAREIFDELSKL-GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV 292
            MYG    +  A +++ ++  L G++    T   ++++        EA  L     ++G+
Sbjct: 410 HMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGI 469

Query: 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            P   TY  L   Y KA  +E  +     M ++G  P+
Sbjct: 470 KPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPD 507



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 155/326 (47%), Gaps = 7/326 (2%)

Query: 3    KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTRD 61
            +Q     D   ++ L++   + G    A  +F+ M   G  P P+V +  I  H L    
Sbjct: 779  RQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDG--PSPTVESINILLHALCVDG 836

Query: 62   KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            + + L   +   Q M G +  K +I+   ++L A A+A N+ +V  ++  +  +   P I
Sbjct: 837  RLEELYVVVEELQDM-GFKISKSSIL---LMLDAFARAGNIFEVKKIYSSMKAAGYLPTI 892

Query: 122  YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
              Y  +++   K   +++ E ++S M+    K ++  +N ++  Y   + + K  QV++ 
Sbjct: 893  RLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQR 952

Query: 182  LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
            +  +  +P   T+N++II Y + R   +   + Q+M  +   P   TY+ +I+ +G    
Sbjct: 953  IKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKC 1012

Query: 242  VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
            + +A ++F+EL   G  +  S  + M++    +G  ++A+ L +   N G+ P  +T  L
Sbjct: 1013 LEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHL 1072

Query: 302  LYKAYTKANMKELVQKLLKRMEQNGI 327
            L  +Y+ +   +  +K+L  ++   +
Sbjct: 1073 LMVSYSSSGNPQEAEKVLSNLKDTEV 1098



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/361 (19%), Positives = 151/361 (41%), Gaps = 33/361 (9%)

Query: 6    WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI----------TA 55
            W    + +Y  L+           A  +FS++R SGC    SV  +++          TA
Sbjct: 676  WCFGSSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETA 735

Query: 56   H----------------------LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 93
            H                      +    K K   KA      ++   R  P++ T+N L+
Sbjct: 736  HQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGR-TPDLKTWNSLM 794

Query: 94   RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
             A AQ    ++  A+F  +     +P + + N ++ A   +G ++E+  V+  ++    K
Sbjct: 795  SAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFK 854

Query: 154  PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
                +  L++D++ +     ++++++ S+  +   PT+  +  MI    K +    AE +
Sbjct: 855  ISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIM 914

Query: 214  FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
              +M    +      +  ++ MY   ++  +  +++  + + G +   +T N ++  YC 
Sbjct: 915  VSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCR 974

Query: 274  NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
            +  P E  LL +   N+G+ P   TYK L  A+ K    E  ++L + +   G+  ++ F
Sbjct: 975  DRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSF 1034

Query: 334  F 334
            +
Sbjct: 1035 Y 1035



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 150/340 (44%), Gaps = 7/340 (2%)

Query: 6    WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA 65
            ++ A + +Y+ +I   GK+   + A  +   +R SG  PD   +N+L++A+     +   
Sbjct: 747  FHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYA----QCGC 802

Query: 66   LAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTY 124
              +A   F  M   +   P + + NILL A C   R ++++  + +EL +        + 
Sbjct: 803  YERARAIFNTMM-RDGPSPTVESINILLHALCVDGR-LEELYVVVEELQDMGFKISKSSI 860

Query: 125  NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
              ++DA+ + G I E++ + S MK+    P I  + ++I+   K +     E +   +  
Sbjct: 861  LLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEE 920

Query: 185  SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
            +  K  L  +NSM+  Y       K   V+Q++      P   TY  +I MY        
Sbjct: 921  ANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEE 980

Query: 245  AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
               +  ++  LG D K+ T  +++ A+       +A+ LFE   + G+  D S Y  + K
Sbjct: 981  GYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMK 1040

Query: 305  AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
                +      +KLL+ M+  GI P        + ++SSS
Sbjct: 1041 ISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSS 1080



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 132/308 (42%), Gaps = 37/308 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA---- 65
           D   Y+ +I+V G+ G    A  LF E+   G  PD   YN+L+ A    R+  K     
Sbjct: 331 DLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVY 390

Query: 66  ---------------------------LAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
                                      L  AL  ++ MKG+    P+ +TY +L+ +  +
Sbjct: 391 QQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGK 450

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
           A    +  AL  E+ +  + P + TY+ ++  Y K G  +E E   S M  +  KPD + 
Sbjct: 451 ANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLA 510

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +++++D   +     K   +++ ++     P+   +  MI+   K       +   + M 
Sbjct: 511 YSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDME 570

Query: 219 AM-KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
            +    P  I+    + + G C +++ AR++   ++  G +++  TL ++L +Y  +G  
Sbjct: 571 ELCGMNPLEISS---VLVKGECFDLA-ARQLKVAITN-GYELENDTLLSILGSYSSSGRH 625

Query: 278 TEADLLFE 285
           +EA  L E
Sbjct: 626 SEAFELLE 633



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 115/266 (43%), Gaps = 2/266 (0%)

Query: 83   KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
            K  +  +N +L+      +  +   +++ + E+ L PD  TYN ++  Y ++   +E   
Sbjct: 924  KVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYL 983

Query: 143  VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
            ++ +M++    P + T+  LI ++GK++  ++ EQ+F+ L+    K     +++M+    
Sbjct: 984  LMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISR 1043

Query: 203  KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
             +    KAE + Q M      P+  T   ++  Y    N   A ++   L     ++   
Sbjct: 1044 DSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTL 1103

Query: 263  TLNAMLEAYCMN-GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
              +++++AY  +    +  + L E     G+ PD   +    +A + +  K  V  LLK 
Sbjct: 1104 PYSSVIDAYLRSKDYNSGIERLLEMKKE-GLEPDHRIWTCFVRAASFSKEKIEVMLLLKA 1162

Query: 322  MEQNGIVPNKRFFLEALETFSSSLAG 347
            +E  G     R      E   S + G
Sbjct: 1163 LEDIGFDLPIRLLAGRPELLVSEVDG 1188



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/287 (19%), Positives = 128/287 (44%), Gaps = 9/287 (3%)

Query: 7    YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
            Y+    +Y  +I ++ K  + R A  + SEM  +  + + +++N+++  +    D  K +
Sbjct: 888  YLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTV 947

Query: 67   AKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
                  +Q++K  G+E   P+  TYN L+    + R  ++   L +++    L P + TY
Sbjct: 948  Q----VYQRIKETGLE---PDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTY 1000

Query: 125  NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
              ++ A+GK   +++ E +   + S   K D   ++ ++       +  K E++ + + +
Sbjct: 1001 KSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKN 1060

Query: 185  SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
            +  +PTL T + ++++Y  +    +AE V   +   +   + + Y  +I  Y    + + 
Sbjct: 1061 AGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNS 1120

Query: 245  AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
              E   E+ K G +         + A   +    E  LL +   ++G
Sbjct: 1121 GIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVMLLLKALEDIG 1167


>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
          Length = 1429

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 149/322 (46%), Gaps = 10/322 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ ++ V  + G+   A  L   MR  GC PD   +N LI A L +      LA  L  
Sbjct: 227 VYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLD 286

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +  G+   +P+ +TYN LL AC++  N+D    +F+++      PD++TYN ++  YG
Sbjct: 287 MVRNSGL---RPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYG 343

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + G+  E E +   ++     PD +T+N L+ ++ + +  +K+++V++ +          
Sbjct: 344 RCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEM 403

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMK----YTPSFITYECIITMYGYCDNVSRAREI 248
           T+N++I  YGK   QG+ +   Q    MK      P  ITY  +I   G  +    A  +
Sbjct: 404 TYNTIIHMYGK---QGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAAL 460

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             E+  +G    + T +A++  Y   G   EA+  F      G  PD+  Y ++     +
Sbjct: 461 MSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLR 520

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
            N       L + M  +G  P+
Sbjct: 521 GNETRKAWGLYRDMISDGHTPS 542



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 161/338 (47%), Gaps = 25/338 (7%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSV------YNALITAHL 57
           + W+  +  + + ++ V+G+  Q  LA+ +F+       R +P+V      YNA++  + 
Sbjct: 184 RHWHSPNARMVAAILGVLGRWNQESLAVEIFT-------RAEPTVGDRVQVYNAMMGVYS 236

Query: 58  HTR--DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV--DQVNALFKELH 113
            +    KA+ L  A+    + +G   C P+++++N L+ A  ++  +  +    L   + 
Sbjct: 237 RSGKFSKAQELVDAM----RQRG---CVPDLISFNTLINARLKSGGLTPNLAVELLDMVR 289

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
            S L PD  TYN ++ A  ++  +     V   M++++C+PD+ T+N +I  YG+     
Sbjct: 290 NSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAA 349

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           + E++F  L      P   T+NS++  + + R   K + V+Q+M  M +    +TY  II
Sbjct: 350 EAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTII 409

Query: 234 TMYGYCDNVSRAREIFDELSKL-GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV 292
            MYG    +  A +++ ++  L G++    T   ++++        EA  L     ++G+
Sbjct: 410 HMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGI 469

Query: 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            P   TY  L   Y KA  +E  +     M ++G  P+
Sbjct: 470 KPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPD 507



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 155/326 (47%), Gaps = 7/326 (2%)

Query: 3    KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTRD 61
            +Q     D   ++ L++   + G    A  +F+ M   G  P P+V +  I  H L    
Sbjct: 779  RQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDG--PSPTVESINILLHALCVDG 836

Query: 62   KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            + + L   +   Q M G +  K +I+   ++L A A+A N+ +V  ++  +  +   P I
Sbjct: 837  RLEELYVVVEELQDM-GFKISKSSIL---LMLDAFARAGNIFEVKKIYSSMKAAGYLPTI 892

Query: 122  YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
              Y  +++   K   +++ E ++S M+    K ++  +N ++  Y   + + K  QV++ 
Sbjct: 893  RLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQR 952

Query: 182  LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
            +  +  +P   T+N++II Y + R   +   + Q+M  +   P   TY+ +I+ +G    
Sbjct: 953  IKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKC 1012

Query: 242  VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
            + +A ++F+EL   G  +  S  + M++    +G  ++A+ L +   N G+ P  +T  L
Sbjct: 1013 LEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHL 1072

Query: 302  LYKAYTKANMKELVQKLLKRMEQNGI 327
            L  +Y+ +   +  +K+L  ++   +
Sbjct: 1073 LMVSYSSSGNPQEAEKVLSNLKDTEV 1098



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/361 (19%), Positives = 151/361 (41%), Gaps = 33/361 (9%)

Query: 6    WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI----------TA 55
            W    + +Y  L+           A  +FS++R SGC    SV  +++          TA
Sbjct: 676  WCFGSSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETA 735

Query: 56   H----------------------LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 93
            H                      +    K K   KA      ++   R  P++ T+N L+
Sbjct: 736  HQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGR-TPDLKTWNSLM 794

Query: 94   RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
             A AQ    ++  A+F  +     +P + + N ++ A   +G ++E+  V+  ++    K
Sbjct: 795  SAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFK 854

Query: 154  PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
                +  L++D++ +     ++++++ S+  +   PT+  +  MI    K +    AE +
Sbjct: 855  ISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIM 914

Query: 214  FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
              +M    +      +  ++ MY   ++  +  +++  + + G +   +T N ++  YC 
Sbjct: 915  VSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCR 974

Query: 274  NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
            +  P E  LL +   N+G+ P   TYK L  A+ K    E  ++L + +   G+  ++ F
Sbjct: 975  DRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSF 1034

Query: 334  F 334
            +
Sbjct: 1035 Y 1035



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 150/340 (44%), Gaps = 7/340 (2%)

Query: 6    WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA 65
            ++ A + +Y+ +I   GK+   + A  +   +R SG  PD   +N+L++A+     +   
Sbjct: 747  FHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYA----QCGC 802

Query: 66   LAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTY 124
              +A   F  M   +   P + + NILL A C   R ++++  + +EL +        + 
Sbjct: 803  YERARAIFNTMM-RDGPSPTVESINILLHALCVDGR-LEELYVVVEELQDMGFKISKSSI 860

Query: 125  NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
              ++DA+ + G I E++ + S MK+    P I  + ++I+   K +     E +   +  
Sbjct: 861  LLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEE 920

Query: 185  SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
            +  K  L  +NSM+  Y       K   V+Q++      P   TY  +I MY        
Sbjct: 921  ANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEE 980

Query: 245  AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
               +  ++  LG D K+ T  +++ A+       +A+ LFE   + G+  D S Y  + K
Sbjct: 981  GYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMK 1040

Query: 305  AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
                +      +KLL+ M+  GI P        + ++SSS
Sbjct: 1041 ISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSS 1080



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 132/308 (42%), Gaps = 37/308 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA---- 65
           D   Y+ +I+V G+ G    A  LF E+   G  PD   YN+L+ A    R+  K     
Sbjct: 331 DLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVY 390

Query: 66  ---------------------------LAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
                                      L  AL  ++ MKG+    P+ +TY +L+ +  +
Sbjct: 391 QQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGK 450

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
           A    +  AL  E+ +  + P + TY+ ++  Y K G  +E E   S M  +  KPD + 
Sbjct: 451 ANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLA 510

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +++++D   +     K   +++ ++     P+   +  MI+   K       +   + M 
Sbjct: 511 YSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDME 570

Query: 219 AM-KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
            +    P  I+    + + G C +++ AR++   ++  G +++  TL ++L +Y  +G  
Sbjct: 571 ELCGMNPLEISS---VLVKGECFDLA-ARQLKVAITN-GYELENDTLLSILGSYSSSGRH 625

Query: 278 TEADLLFE 285
           +EA  L E
Sbjct: 626 SEAFELLE 633



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 115/266 (43%), Gaps = 2/266 (0%)

Query: 83   KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
            K  +  +N +L+      +  +   +++ + E+ L PD  TYN ++  Y ++   +E   
Sbjct: 924  KVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYL 983

Query: 143  VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
            ++ +M++    P + T+  LI ++GK++  ++ EQ+F+ L+    K     +++M+    
Sbjct: 984  LMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISR 1043

Query: 203  KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
             +    KAE + Q M      P+  T   ++  Y    N   A ++   L     ++   
Sbjct: 1044 DSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTL 1103

Query: 263  TLNAMLEAYCMN-GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
              +++++AY  +    +  + L E     G+ PD   +    +A + +  K  V  LLK 
Sbjct: 1104 PYSSVIDAYLRSKDYNSGIERLLEMKKE-GLEPDHRIWTCFVRAASFSKEKIEVMLLLKA 1162

Query: 322  MEQNGIVPNKRFFLEALETFSSSLAG 347
            +E  G     R      E   S + G
Sbjct: 1163 LEDIGFDLPIRLLAGRPELLVSEVDG 1188



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/287 (19%), Positives = 128/287 (44%), Gaps = 9/287 (3%)

Query: 7    YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
            Y+    +Y  +I ++ K  + R A  + SEM  +  + + +++N+++  +    D  K +
Sbjct: 888  YLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTV 947

Query: 67   AKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
                  +Q++K  G+E   P+  TYN L+    + R  ++   L +++    L P + TY
Sbjct: 948  Q----VYQRIKETGLE---PDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTY 1000

Query: 125  NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
              ++ A+GK   +++ E +   + S   K D   ++ ++       +  K E++ + + +
Sbjct: 1001 KSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKN 1060

Query: 185  SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
            +  +PTL T + ++++Y  +    +AE V   +   +   + + Y  +I  Y    + + 
Sbjct: 1061 AGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNS 1120

Query: 245  AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
              E   E+ K G +         + A   +    E  LL +   ++G
Sbjct: 1121 GIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVMLLLKALEDIG 1167


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 156/327 (47%), Gaps = 9/327 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++  +   GQ   A+ LF +M   GC+PD   YN +I +      K + +  A
Sbjct: 337 DVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLC----KDRLVNDA 392

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           + +  +M  +G+    PN VTY+ +L        +D+   LFKE+    + P+  T++ +
Sbjct: 393 MEFLSEMVDRGI---PPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSIL 449

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D   + GM+ E   V   M     +P+I T+N L++ Y  R   ++  +VF+ ++    
Sbjct: 450 VDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGC 509

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P L ++N +I  Y  +R   KA+ +  +M+  K TP+ +TY  I+    Y   +  A+E
Sbjct: 510 APDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQE 569

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F ++   G    + T + +L   C +G   EA  LF++     + PD   Y +L +   
Sbjct: 570 LFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMF 629

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFF 334
                E+ + L  ++  +GI P  R +
Sbjct: 630 IGGKLEVAKGLFSKLSADGIQPPGRTY 656



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 167/361 (46%), Gaps = 50/361 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ LI  +  +G+ ++A+ L++EM  SG  PD   YN LI    ++ +   A+   
Sbjct: 162 DVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVH-- 219

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F+KM+    CKPN+VTYN ++ +  + R V+       E+    + PD  TYN ++ 
Sbjct: 220 --VFKKME-QNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVH 276

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS-YGKRQAFDKME------------ 176
                G + E   +  RM+ N CKPD++T+N++IDS Y  R   D  +            
Sbjct: 277 GLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPP 336

Query: 177 ----------------------QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
                                 ++FK +     KP +  +N++I +  K RL   A    
Sbjct: 337 DVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFL 396

Query: 215 QKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTL--NAMLEA 270
            +M      P+ +TY  I  ++G+C+   +  A ++F E+  +G+++  +TL  + +++ 
Sbjct: 397 SEMVDRGIPPNAVTYSTI--LHGFCNLGQLDEATQLFKEM--VGRNVMPNTLTFSILVDG 452

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT-KANMKELVQKLLKRMEQNGIVP 329
            C  G+ +EA  +FE     GV P+  TY  L   Y  +  M E  +K+ + M   G  P
Sbjct: 453 LCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNE-ARKVFEIMVGKGCAP 511

Query: 330 N 330
           +
Sbjct: 512 D 512



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 149/327 (45%), Gaps = 9/327 (2%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R    D   Y+ ++  +   GQ   A  LF  M  +GC+PD   YN +I +      K +
Sbjct: 262 RGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLY----KDR 317

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            +  A  +  +M   +   P++VTY  +L        +++   LFK++ +    PD+  Y
Sbjct: 318 LVNDAADFLSEMVD-QGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAY 376

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++D+  K+ ++ +    LS M      P+ +T++ ++  +      D+  Q+FK ++ 
Sbjct: 377 NTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVG 436

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNV 242
               P   TF+ ++    +  +  +A +VF+ MT     P+  TY  +  M GYC    +
Sbjct: 437 RNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNAL--MNGYCLRCKM 494

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           + AR++F+ +   G    + + N ++  YC +    +A  L        +TP++ TY  +
Sbjct: 495 NEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTI 554

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
            K           Q+L K+M  +G++P
Sbjct: 555 MKGLCYVGRLLDAQELFKKMCSSGMLP 581



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 142/320 (44%), Gaps = 9/320 (2%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           LI  + +      A+ ++ +M   G +PD   +  LI   +    K K    A+  + +M
Sbjct: 134 LINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLING-VCNEGKIKV---AVELYNEM 189

Query: 77  --KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
              G E   P++++YN L+     + N +    +FK++ ++   P++ TYN ++D+  K+
Sbjct: 190 VRSGHE---PDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKD 246

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
            ++ +    LS M      PD IT+N ++         ++  ++FK +  +  KP + T+
Sbjct: 247 RLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTY 306

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N +I +  K RL   A     +M      P  +TY  I+    Y   ++ A  +F ++ +
Sbjct: 307 NIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQ 366

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
            G    V   N ++++ C + L  +A        + G+ P++ TY  +   +      + 
Sbjct: 367 KGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDE 426

Query: 315 VQKLLKRMEQNGIVPNKRFF 334
             +L K M    ++PN   F
Sbjct: 427 ATQLFKEMVGRNVMPNTLTF 446



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 106/261 (40%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P+++T+  L+        +     L+ E+  S   PD+ +YN +++    +G       
Sbjct: 160 QPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVH 219

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           V  +M+ N CKP+++T+N +IDS  K +  +        ++     P   T+NS++    
Sbjct: 220 VFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLC 279

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
                 +A  +F++M      P  +TY  II        V+ A +   E+   G    V 
Sbjct: 280 CLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVV 339

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T   +L   C  G   EA  LF+     G  PD   Y  +  +  K  +     + L  M
Sbjct: 340 TYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEM 399

Query: 323 EQNGIVPNKRFFLEALETFSS 343
              GI PN   +   L  F +
Sbjct: 400 VDRGIPPNAVTYSTILHGFCN 420



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 111/247 (44%), Gaps = 4/247 (1%)

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           + + NIL+    +  +VD   +++ ++ +  + PD+ T+  +++     G IK    + +
Sbjct: 128 VYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYN 187

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
            M  +  +PD+I++N LI+        +    VFK +  +  KP + T+N++I +  K R
Sbjct: 188 EMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDR 247

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVST 263
           L   A     +M      P  ITY  I+  +G C    ++ A  +F  + + G    V T
Sbjct: 248 LVNDAMDFLSEMVGRGIPPDAITYNSIV--HGLCCLGQLNEATRLFKRMEQNGCKPDVVT 305

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N ++++   + L  +A        + G+ PD  TY  +              +L K+ME
Sbjct: 306 YNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKME 365

Query: 324 QNGIVPN 330
           Q G  P+
Sbjct: 366 QKGCKPD 372



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 11/193 (5%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALGYFQKMKGMERCKPNIVTYN 90
           +F  M   GC PD   YN LI  + ++R  DKAKAL   +        +++  PN VTYN
Sbjct: 500 VFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMS-------VKKLTPNTVTYN 552

Query: 91  ILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
            +++  C   R +D    LFK++  S + P + TY+ +++   K+G + E   +   MK 
Sbjct: 553 TIMKGLCYVGRLLD-AQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKE 611

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
            + +PDII + +LI+        +  + +F  L     +P   T+N MI    K  L  +
Sbjct: 612 KKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDE 671

Query: 210 AEYVFQKMTAMKY 222
           A  +F+K   MK+
Sbjct: 672 AYELFRKWKMMKH 684



 Score = 44.7 bits (104), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 58/152 (38%)

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           F  +     +P++  F   + +  K +      Y+  +M     T +  +   +I     
Sbjct: 81  FYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCR 140

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
            ++V  A  ++ ++ KLG    V T   ++   C  G    A  L+      G  PD  +
Sbjct: 141 LNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVIS 200

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y  L      +    +   + K+MEQNG  PN
Sbjct: 201 YNTLINGLCNSGNTNMAVHVFKKMEQNGCKPN 232


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 163/343 (47%), Gaps = 9/343 (2%)

Query: 7    YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
            ++ +  IY+ +I  + K      A+ +F  M   G R D   YN LI+  L    +    
Sbjct: 705  FVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISG-LSNSGRWTDA 763

Query: 67   AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            A+ L    K K      PN++ +  L+    +  N+ +   L+KE+    + P+++TYN 
Sbjct: 764  ARLLRDMVKRK----IDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNS 819

Query: 127  VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
            +++ +  +G + + + +   M S  C PD++T+N LI  + K +  +   ++F  + +  
Sbjct: 820  LINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQG 879

Query: 187  EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
                  T+N++I  Y +A     A+ VF +M     +P  +TY   I +   C+N  + +
Sbjct: 880  LVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYN--ILLDCLCNNGKIEK 937

Query: 245  AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
            A  + ++L K   D+ + T N +++  C      EA  LF +    GV PD+  Y  +  
Sbjct: 938  ALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMIS 997

Query: 305  AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
               +  ++    KL +RM+++G +P++R + E L    +SL+ 
Sbjct: 998  GLCRKGLQREADKLCRRMKEDGFMPSERIYDETLRDHYTSLSA 1040



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 166/343 (48%), Gaps = 15/343 (4%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  +  +Y+ LI  + K G+  +A+ L +EM   G   D   YN L+T   ++   + A 
Sbjct: 172 YEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDA- 230

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A+ L    K        P++VT+  L+    +  N+D+   L+KE+ +S + P+  TYN 
Sbjct: 231 ARMLRDMMK----RSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNS 286

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++    +G + + +     M S  C P+++T+N LI  + K +  D+  ++F+ +    
Sbjct: 287 IINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEG 346

Query: 187 EKPTLPTFNSMIINY---GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN-- 241
               + T+N++I  Y   GK R+   A  +F  M + + TP  IT+ CI+ ++G C N  
Sbjct: 347 FNADIFTYNTLIHGYCQVGKLRV---ALDIFCWMVSRRVTPDIITH-CIL-LHGLCVNGE 401

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +  A   FD++ +  K + +   N M+   C      +A  LF      GV PD+ TY +
Sbjct: 402 IESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTI 461

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           +     K   +    +L++RM++ GI+       + LE  SSS
Sbjct: 462 MILGLCKNGPRREADELIRRMKEEGIICQMNAEDDHLEEHSSS 504



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 136/320 (42%), Gaps = 11/320 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR-DKAKALAKALGY 72
           +++++ V+ K  +  + ++L+ +M N G   D  +Y+  I  H   R  +       LG 
Sbjct: 607 FTRVLTVIAKMNKFDIVIYLYHKMENLGISHD--LYSFTILIHCFCRCSRLSLALALLGK 664

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             K+      +P+IVT   LL    Q     +  +L   +      P++  YN V++   
Sbjct: 665 MMKLGF----RPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLC 720

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           KN  +     V   M+    + D +T+N LI        +    ++ + ++  K  P + 
Sbjct: 721 KNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVI 780

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFD 250
            F ++I  + K     +A  ++++M      P+  TY  +I   G+C +  +  A+ +FD
Sbjct: 781 FFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLIN--GFCIHGCLGDAKYMFD 838

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            +   G    V T N ++  +C +    +   LF      G+  D+ TY  L   Y +A 
Sbjct: 839 LMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAG 898

Query: 311 MKELVQKLLKRMEQNGIVPN 330
              + QK+  RM   G+ P+
Sbjct: 899 KLNVAQKVFNRMVDCGVSPD 918



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 115/277 (41%), Gaps = 1/277 (0%)

Query: 54  TAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH 113
           T  +H   +   L+ AL    KM  +   +P+IVT+  LL        +    +L   + 
Sbjct: 110 TILIHCFCRCSRLSFALSVLGKMMKLGY-EPSIVTFGSLLHGFCLVNRIGDAFSLVILMV 168

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
           +S   P++  YN ++D   KNG +     +L+ M+      D++T+N L+        + 
Sbjct: 169 KSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWS 228

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
              ++ + +M     P + TF ++I  + K     +A+ ++++M      P+ +TY  II
Sbjct: 229 DAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSII 288

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
                   +  A++ FD ++  G    V T N ++  +C   +  E   LF+     G  
Sbjct: 289 NGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFN 348

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            D  TY  L   Y +     +   +   M    + P+
Sbjct: 349 ADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPD 385



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/278 (19%), Positives = 108/278 (38%), Gaps = 35/278 (12%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+IV +  LL A A  R  + V    +++    ++ D+Y++  ++  + +   +    SV
Sbjct: 69  PSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSV 128

Query: 144 LSRMKSNQCKPDIITF-----------------------------------NLLIDSYGK 168
           L +M     +P I+TF                                   N LID   K
Sbjct: 129 LGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCK 188

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
               +   ++   +        + T+N+++     +     A  + + M      P  +T
Sbjct: 189 NGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVT 248

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
           +  +I ++    N+  A+E++ E+ +   D    T N+++   CM+G   +A   F+   
Sbjct: 249 FTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMA 308

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           + G  P+  TY  L   + K  M +   KL +RM   G
Sbjct: 309 SKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEG 346



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 66/333 (19%), Positives = 130/333 (39%), Gaps = 44/333 (13%)

Query: 41  GCRPDPSVYNALITA--HLHTRDKAK------ALAKALGYFQKMKGMERCKPNIVTYNIL 92
           G  P+ S+  +   A  H H R++ +          A   F +M    R  P+IV +  +
Sbjct: 552 GNNPETSLSRSFSGASHHHHYRERLRNELHCIKFDDAFSLFCEML-QSRPIPSIVDFTRV 610

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           L   A+    D V  L+ ++    ++ D+Y++  ++  + +   +    ++L +M     
Sbjct: 611 LTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGF 670

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           +P I+T   L++ + +   F +   +  S+      P +  +N++I    K R    A  
Sbjct: 671 RPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALE 730

Query: 213 VF-----------------------------------QKMTAMKYTPSFITYECIITMYG 237
           VF                                   + M   K  P+ I +  +I  + 
Sbjct: 731 VFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFV 790

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
              N+  AR ++ E+ +      V T N+++  +C++G   +A  +F+   + G  PD  
Sbjct: 791 KEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVV 850

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           TY  L   + K+   E   KL   M   G+V +
Sbjct: 851 TYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGD 883



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 78/200 (39%)

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           S+   M  ++  P I+ F  ++    K   FD +  ++  + +      L +F  +I  +
Sbjct: 590 SLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCF 649

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            +      A  +  KM  + + PS +T   ++  +   +    A  + D +   G    V
Sbjct: 650 CRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNV 709

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
              N ++   C N     A  +F      G+  D+ TY  L    + +       +LL+ 
Sbjct: 710 VIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRD 769

Query: 322 MEQNGIVPNKRFFLEALETF 341
           M +  I PN  FF   ++TF
Sbjct: 770 MVKRKIDPNVIFFTALIDTF 789



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 63/156 (40%)

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
           F+    +F  ++HS+  P++  F  ++      R      Y  QKM     +    ++  
Sbjct: 52  FEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTI 111

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           +I  +  C  +S A  +  ++ KLG +  + T  ++L  +C+     +A  L       G
Sbjct: 112 LIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSG 171

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
             P+   Y  L     K     +  +LL  ME+ G+
Sbjct: 172 YEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGL 207



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 78/197 (39%), Gaps = 4/197 (2%)

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           M  +Q  P I+ F  L+ +    + ++ +    + +        L +F  +I  + +   
Sbjct: 62  MVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSR 121

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTL 264
              A  V  KM  + Y PS +T+  +  ++G+C  + +  A  +   + K G +  V   
Sbjct: 122 LSFALSVLGKMMKLGYEPSIVTFGSL--LHGFCLVNRIGDAFSLVILMVKSGYEPNVVVY 179

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N +++  C NG    A  L       G+  D  TY  L      +       ++L+ M +
Sbjct: 180 NTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMK 239

Query: 325 NGIVPNKRFFLEALETF 341
             I P+   F   ++ F
Sbjct: 240 RSINPDVVTFTALIDVF 256


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 145/317 (45%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L+  +GK+      M L  EM   G +P+  VY   I   +  R  A  + +A    
Sbjct: 226 YSSLMVGLGKRRDIDSVMGLLKEMETLGLKPN--VYTFTICIRVLGR--AGKINEAYEIL 281

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M   E C P++VTY +L+ A   AR +D    +F+++      PD  TY  ++D +  
Sbjct: 282 KRMDD-EGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSD 340

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           N  +  ++   S M+ +   PD++TF +L+D+  K   F +       +      P L T
Sbjct: 341 NRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHT 400

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N++I    +      A  +F  M ++   P+  TY   I  YG   +   A E F+++ 
Sbjct: 401 YNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMK 460

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    +   NA L +    G   EA  +F    ++G+ PDS TY ++ K Y+K    +
Sbjct: 461 TKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEID 520

Query: 314 LVQKLLKRMEQNGIVPN 330
              KLL  M +NG  P+
Sbjct: 521 EAIKLLSEMMENGCEPD 537



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 150/330 (45%), Gaps = 5/330 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           + ++R    DT  Y  +   +  KG  + A +   +MR  G   +   YN LI    H  
Sbjct: 143 LMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLI----HLL 198

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K++   +A+  +++M  +E  +P++ TY+ L+    + R++D V  L KE+    L P+
Sbjct: 199 LKSRFCTEAMEVYRRMI-LEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPN 257

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           +YT+   +   G+ G I E   +L RM    C PD++T+ +LID+    +  D  ++VF+
Sbjct: 258 VYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFE 317

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +   + KP   T+ +++  +   R     +  + +M    + P  +T+  ++       
Sbjct: 318 KMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAG 377

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           N   A +  D +   G    + T N ++          +A  LF N  ++GV P + TY 
Sbjct: 378 NFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYI 437

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +    Y K+       +  ++M+  GI PN
Sbjct: 438 VFIDYYGKSGDSVSALETFEKMKTKGIAPN 467



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 153/326 (46%), Gaps = 42/326 (12%)

Query: 14   YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
            Y+ LI  + +     +A  +F +++++GC PD + YN L+ A+     K+  + +    +
Sbjct: 788  YNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAY----GKSGKIDELFELY 843

Query: 74   QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL-HESILAPDIYTYNGVMDAYG 132
            ++M   E C+ N +T+NI++    +A NVD    L+ +L  +   +P   TY  ++D   
Sbjct: 844  KEMSTHE-CEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLS 902

Query: 133  KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
            K+G + E + +   M    C+P+   +N+LI+ +GK    D    +FK ++    +P L 
Sbjct: 903  KSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLK 962

Query: 193  TFN----------------------------------SMIIN-YGKARLQGKAEYVFQKM 217
            T++                                  ++IIN  GK+    +A  +F +M
Sbjct: 963  TYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEM 1022

Query: 218  -TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
             T+   TP   TY  +I   G    V  A +I++E+ + G +  V T NA++  Y ++G 
Sbjct: 1023 KTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGK 1082

Query: 277  PTEADLLFENSHNMGVTPDSSTYKLL 302
            P  A  +++     G +P++ TY+ L
Sbjct: 1083 PEHAYAVYQTMVTGGFSPNTGTYEQL 1108



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 143/325 (44%), Gaps = 6/325 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  + +  +   A+ LF  M + G +P    Y   I  +  + D   AL      F
Sbjct: 401 YNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALET----F 456

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KMK  +   PNIV  N  L + A+A    +   +F  L +  L PD  TYN +M  Y K
Sbjct: 457 EKMK-TKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSK 515

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G I E   +LS M  N C+PD+I  N LI++  K    D+  ++F  +   K KPT+ T
Sbjct: 516 VGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVT 575

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N+++   GK     +A  +F+ M      P+ IT+  +       D V+ A ++  ++ 
Sbjct: 576 YNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMM 635

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
            +G    V T N ++     NG   EA   F     + V PD  T   L     KA++ E
Sbjct: 636 DMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVKASLIE 694

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEAL 338
              K++     N        F E L
Sbjct: 695 DAYKIITNFLYNCADQPANLFWEDL 719



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 135/301 (44%), Gaps = 8/301 (2%)

Query: 34   FSE--MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI 91
            FSE  + N  CR   S+   +I        K   ++ A   F+K       +P + TYN+
Sbjct: 735  FSERLVANGICRDGDSILVPIIRYSC----KHNNVSGARTLFEKFTKDLGVQPKLPTYNL 790

Query: 92   LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151
            L+    +A  ++    +F ++  +   PD+ TYN ++DAYGK+G I E+  +   M +++
Sbjct: 791  LIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHE 850

Query: 152  CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKA 210
            C+ + IT N++I    K    D    ++  LM  ++  PT  T+  +I    K+    +A
Sbjct: 851  CEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEA 910

Query: 211  EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
            + +F+ M      P+   Y  +I  +G       A  +F  + K G    + T + +++ 
Sbjct: 911  KQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDC 970

Query: 271  YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN-GIVP 329
             CM G   E    F+     G+ PD   Y L+     K++  E    L   M+ + GI P
Sbjct: 971  LCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITP 1030

Query: 330  N 330
            +
Sbjct: 1031 D 1031



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 155/343 (45%), Gaps = 26/343 (7%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D+  Y+ ++    K G+   A+ L SEM  +GC PD  V N+LI    +T  KA  + 
Sbjct: 500 VPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLI----NTLYKADRVD 555

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A   F +MK M + KP +VTYN LL    +   + +   LF+ + +    P+  T+N +
Sbjct: 556 EAWKMFMRMKEM-KLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTL 614

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
            D   KN  +     +L +M    C PD+ T+N +I    K     K    F   M    
Sbjct: 615 FDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQV-KEAMCFFHQMKKLV 673

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT----PSFITYE----CIITMYGYC 239
            P   T  +++    KA L    E  ++ +T   Y     P+ + +E     I+   G  
Sbjct: 674 YPDFVTLCTLLPGVVKASL---IEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGID 730

Query: 240 DNVSRA-REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN-SHNMGVTPDSS 297
           + VS + R + + + + G     S L  ++   C +   + A  LFE  + ++GV P   
Sbjct: 731 NAVSFSERLVANGICRDGD----SILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLP 786

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK---RFFLEA 337
           TY LL     +A+M E+ Q +  +++  G +P+     F L+A
Sbjct: 787 TYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDA 829



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 120/298 (40%), Gaps = 5/298 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
            +SEM   G  PD   +  L+ A      KA    +A      M+  +   PN+ TYN L
Sbjct: 350 FWSEMEKDGHVPDVVTFTILVDALC----KAGNFGEAFDTLDVMRD-QGILPNLHTYNTL 404

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +   +D    LF  +    + P  YTY   +D YGK+G          +MK+   
Sbjct: 405 ICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGI 464

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            P+I+  N  + S  K     + +Q+F  L      P   T+N M+  Y K     +A  
Sbjct: 465 APNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIK 524

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +  +M      P  I    +I      D V  A ++F  + ++     V T N +L    
Sbjct: 525 LLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLG 584

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            NG   EA  LFE     G  P++ T+  L+    K +   L  K+L +M   G VP+
Sbjct: 585 KNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPD 642



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 154/369 (41%), Gaps = 51/369 (13%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           Q+    +T  ++ L   + K  +  LA+ +  +M + GC PD   YN +I   +    K 
Sbjct: 601 QKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLV----KN 656

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQV----------------NA 107
             + +A+ +F +MK +    P+ VT   LL    +A  ++                  N 
Sbjct: 657 GQVKEAMCFFHQMKKL--VYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANL 714

Query: 108 LFKELHESILA-PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK------------- 153
            +++L  SILA   I       +    NG+ ++ +S+L  +    CK             
Sbjct: 715 FWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEK 774

Query: 154 --------PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
                   P + T+NLLI    +    +  + VF  +  +   P + T+N ++  YGK+ 
Sbjct: 775 FTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKS- 833

Query: 206 LQGKAEYVFQ---KMTAMKYTPSFITYECIITMYGYCDNVSRAREIF-DELSKLGKDMKV 261
             GK + +F+   +M+  +   + IT+  +I+      NV  A +++ D +S        
Sbjct: 834 --GKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTA 891

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T   +++    +G   EA  LFE   + G  P+ + Y +L   + KA   +    L KR
Sbjct: 892 CTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKR 951

Query: 322 MEQNGIVPN 330
           M + G+ P+
Sbjct: 952 MVKEGVRPD 960



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 113/266 (42%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           +  YF+ + G         T N +L A      ++++  +F  + + I+  D  TY  + 
Sbjct: 101 SFSYFKSVAGNLNLVHTTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIF 160

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            +    G +K+    L +M+      +  ++N LI    K +   +  +V++ ++    +
Sbjct: 161 KSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFR 220

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P+L T++S+++  GK R       + ++M  +   P+  T+   I + G    ++ A EI
Sbjct: 221 PSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEI 280

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
              +   G    V T   +++A C       A  +FE        PD  TY  L   ++ 
Sbjct: 281 LKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSD 340

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
               + V++    ME++G VP+   F
Sbjct: 341 NRDLDSVKQFWSEMEKDGHVPDVVTF 366


>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 158/358 (44%), Gaps = 46/358 (12%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   YS L+   GK  +      L  EM + G  PD + YN L+ AH     ++ ++ 
Sbjct: 42  LPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHA----QSGSIK 97

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A+G F++M+G   C PN  TY+ILL    +    D V  LF E+  S   P+  TYN +
Sbjct: 98  EAMGVFRQMQGA-GCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNIL 156

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++ +G+ G  KE+ ++   M     +P++ T+  LI + GK    +  +++   L+H  E
Sbjct: 157 INVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKI---LLHMNE 213

Query: 188 KPTLPT---FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC----- 239
           K  +P+   +  +I  YG+A L  +A   F  M  +   P+  TY  +I M+        
Sbjct: 214 KGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKE 273

Query: 240 ----------DNVSRAREIFD--------------------ELSKLGKDMKVSTLNAMLE 269
                       V+R R+ F+                    E+ K   D    TL A+L 
Sbjct: 274 SEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLS 333

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
            YC  GL  E++  F     +G+ P    Y ++   Y KA+  +   +LL  M  N +
Sbjct: 334 VYCFAGLVEESEEQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMFTNRV 391



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 157/330 (47%), Gaps = 6/330 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD   Y+ L++   ++G    A  +F  M   G  PD + Y+ L+     T  K   L K
Sbjct: 8   ADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLV----ETFGKLNRLEK 63

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
                ++M+      P+I +YN+LL A AQ+ ++ +   +F+++  +   P+  TY+ ++
Sbjct: 64  VSELLKEMESGGSF-PDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILL 122

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + YG++G   ++  +   MK +  +P+  T+N+LI+ +G+   F ++  +F  ++    +
Sbjct: 123 NLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVE 182

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P + T+  +I   GK  L   A+ +   M      PS   Y  +I  YG       A   
Sbjct: 183 PNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVA 242

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F+ ++++G    V T N++++ +   GL  E++ +       GV  +  T+  + +A+ +
Sbjct: 243 FNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQ 302

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
               E   K    ME+    P+++  LEA+
Sbjct: 303 GGQFEEAIKAYVEMEKARCDPDEQ-TLEAV 331



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 146/307 (47%), Gaps = 9/307 (2%)

Query: 37  MRNSGCRPDPSVYNALITA--HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLR 94
           MR+ G + D   YN L++A       D+A+ + + +     +       P+I TY+ L+ 
Sbjct: 1   MRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGIL-------PDITTYSYLVE 53

Query: 95  ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
              +   +++V+ L KE+      PDI +YN +++A+ ++G IKE   V  +M+   C P
Sbjct: 54  TFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVP 113

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           +  T+++L++ YG+   +D +  +F  +  S  +P   T+N +I  +G+     +   +F
Sbjct: 114 NAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLF 173

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
             M      P+  TYE +I   G       A++I   +++ G          ++EAY   
Sbjct: 174 HDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQA 233

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            L  EA + F   + +G  P   TY  L + + K  + +  + +L +M Q+G+  N+  F
Sbjct: 234 ALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTF 293

Query: 335 LEALETF 341
              +E F
Sbjct: 294 NGVIEAF 300



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 111/232 (47%), Gaps = 1/232 (0%)

Query: 113 HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 172
           HE I A DI TYN ++ A  + G+  E E V   M      PDI T++ L++++GK    
Sbjct: 3   HEGIQA-DIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRL 61

Query: 173 DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 232
           +K+ ++ K +      P + ++N ++  + ++    +A  VF++M      P+  TY  +
Sbjct: 62  EKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSIL 121

Query: 233 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV 292
           + +YG        R++F E+     +   +T N ++  +   G   E   LF +     V
Sbjct: 122 LNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENV 181

Query: 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            P+  TY+ L  A  K  + E  +K+L  M + G+VP+ + +   +E +  +
Sbjct: 182 EPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQA 233



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/365 (20%), Positives = 135/365 (36%), Gaps = 88/365 (24%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + +   YS L+ + G+ G+      LF EM+ S   P+ + YN LI              
Sbjct: 112 VPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEG-------- 163

Query: 68  KALGYFQKMKGM------ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
              GYF+++  +      E  +PN+ TY  L+ AC +    +    +   ++E  + P  
Sbjct: 164 ---GYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSS 220

Query: 122 YTYNGVMDAYG-----------------------------------KNGMIKEMESVLSR 146
             Y GV++AYG                                   K G+ KE E++L +
Sbjct: 221 KAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLK 280

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           M  +    +  TFN +I+++ +   F++  + +  +  ++  P   T  +++  Y  A L
Sbjct: 281 MGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGL 340

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE--------------- 251
             ++E  F ++ A+   PS + Y  ++ +Y   D    A ++ DE               
Sbjct: 341 VEESEEQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMFTNRVSNIHQVIGQ 400

Query: 252 ---------------------LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
                                L   G  + V   N +LEA    G    A  +   +   
Sbjct: 401 MIRGDYDDDSNWQMVEYVFEKLKSEGCSLGVRFYNTLLEALWWLGQKERATRVLNEATKR 460

Query: 291 GVTPD 295
           G+ P+
Sbjct: 461 GLFPE 465


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 153/319 (47%), Gaps = 9/319 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI  +  +G+ + A+ LF+EM   G  P+   YN +I     T + + A+      F
Sbjct: 161 FNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAV----DVF 216

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KM+    CKP++VTYN ++ +  + R V+       E+ +  + P+++TYN ++  +  
Sbjct: 217 KKME-QNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCI 275

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + E   +   M      PD +T  +L+D   K     +   VF+++     +P + T
Sbjct: 276 LGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNIST 335

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDE 251
           +N+++  Y   RL  +A+ VF+ M      P   +Y  +I   G+C +  +  A+ +  E
Sbjct: 336 YNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILIN--GFCKSRRMDEAKSLLAE 393

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +     +    T + +++  C  G P EA  +F+   + G+ P+  TY +L   + K   
Sbjct: 394 MYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGH 453

Query: 312 KELVQKLLKRMEQNGIVPN 330
            +   KLLK M++  + PN
Sbjct: 454 LDEALKLLKSMQEKKLEPN 472



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 157/323 (48%), Gaps = 13/323 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + K G T +A+ +F +M  +GC+PD   YN +I +      K + +  A+ + 
Sbjct: 196 YNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLC----KDRLVNDAMEFL 251

Query: 74  QKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            +M  ++R   PN+ TYN ++        +++   LFKE+    + PD  T   ++D   
Sbjct: 252 SEM--LDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLC 309

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K GM+ E   V   M     +P+I T+N L+D Y  ++  ++ ++VF+ ++     P + 
Sbjct: 310 KEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVH 369

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE---IF 249
           ++N +I  + K+R   +A+ +  +M      P  +TY  +  M G C    R +E   IF
Sbjct: 370 SYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTL--MQGLCQ-FGRPKEALNIF 426

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+   G    + T + +L+ +C +G   EA  L ++     + P+   + +L +    A
Sbjct: 427 KEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIA 486

Query: 310 NMKELVQKLLKRMEQNGIVPNKR 332
              E+ ++L  ++  +GI P  R
Sbjct: 487 GKLEVAKELFSKLFADGIRPTIR 509



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 141/321 (43%), Gaps = 13/321 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLHTRDKAKALAKALG 71
           + K +    KK Q    + L ++M   G   +    N LI     L+  D A ++   LG
Sbjct: 91  FGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVSI---LG 147

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
              K+       P   T+N L+        + +   LF E+      P++ +YN +++  
Sbjct: 148 KMFKLG----IHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGL 203

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G       V  +M+ N CKPD++T+N +IDS  K +  +   +    ++     P +
Sbjct: 204 CKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNV 263

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIF 249
            T+N M+  +       +A  +F++M      P  +T   ++   G C    VS AR +F
Sbjct: 264 FTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVD--GLCKEGMVSEARLVF 321

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           + +++ G +  +ST NA+++ YC+  L  EA  +FE     G  P   +Y +L   + K+
Sbjct: 322 ETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKS 381

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +  + LL  M    + P+
Sbjct: 382 RRMDEAKSLLAEMYHKALNPD 402



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 113/242 (46%), Gaps = 9/242 (3%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALGYFQKMKGMERCKPNIV 87
           A  +F  M   GC P    YN LI     +R  D+AK+L   + Y + +       P+ V
Sbjct: 352 AKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEM-YHKALN------PDTV 404

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           TY+ L++   Q     +   +FKE+    L P++ TY+ ++D + K+G + E   +L  M
Sbjct: 405 TYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSM 464

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           +  + +P+I+   +LI+        +  +++F  L     +PT+ T+  MI    K  L 
Sbjct: 465 QEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLS 524

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            +A  +F+KM    + P+  +Y  +I  +    + S A  + DE+        +ST   +
Sbjct: 525 DEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSANLSTFQML 584

Query: 268 LE 269
           L+
Sbjct: 585 LD 586



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 113/266 (42%), Gaps = 1/266 (0%)

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           ++  AL  F +M  M   +P++  +   L + A+ +    V +L  ++    +  ++Y+ 
Sbjct: 68  SIDDALASFYRMVRMNP-RPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSL 126

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N +++   +   +    S+L +M      P   TFN LI+         +  ++F  ++ 
Sbjct: 127 NVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVR 186

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
              +P + ++N++I    K      A  VF+KM      P  +TY  II        V+ 
Sbjct: 187 RGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVND 246

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A E   E+   G    V T N M+  +C+ G   EA  LF+      V PD+ T  +L  
Sbjct: 247 AMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVD 306

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
              K  M    + + + M + G+ PN
Sbjct: 307 GLCKEGMVSEARLVFETMTEKGVEPN 332


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 163/343 (47%), Gaps = 9/343 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           ++ +  IY+ +I  + K      A+ +F  M   G R D   YN LI+  L    +    
Sbjct: 180 FVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISG-LSNSGRWTDA 238

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A+ L    K K      PN++ +  L+    +  N+ +   L+KE+    + P+++TYN 
Sbjct: 239 ARLLRDMVKRK----IDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNS 294

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++ +  +G + + + +   M S  C PD++T+N LI  + K +  +   ++F  + +  
Sbjct: 295 LINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQG 354

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
                 T+N++I  Y +A     A+ VF +M     +P  +TY   I +   C+N  + +
Sbjct: 355 LVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYN--ILLDCLCNNGKIEK 412

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  + ++L K   D+ + T N +++  C      EA  LF +    GV PD+  Y  +  
Sbjct: 413 ALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMIS 472

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
              +  ++    KL +RM+++G +P++R + E L    +SL+ 
Sbjct: 473 GLCRKGLQREADKLCRRMKEDGFMPSERIYDETLRDHYTSLSA 515



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 136/320 (42%), Gaps = 11/320 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR-DKAKALAKALGY 72
           +++++ V+ K  +  + ++L+ +M N G   D  +Y+  I  H   R  +       LG 
Sbjct: 82  FTRVLTVIAKMNKFDIVIYLYHKMENLGISHD--LYSFTILIHCFCRCSRLSLALALLGK 139

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             K+      +P+IVT   LL    Q     +  +L   +      P++  YN V++   
Sbjct: 140 MMKLGF----RPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLC 195

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           KN  +     V   M+    + D +T+N LI        +    ++ + ++  K  P + 
Sbjct: 196 KNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVI 255

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFD 250
            F ++I  + K     +A  ++++M      P+  TY  +I   G+C +  +  A+ +FD
Sbjct: 256 FFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLIN--GFCIHGCLGDAKYMFD 313

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            +   G    V T N ++  +C +    +   LF      G+  D+ TY  L   Y +A 
Sbjct: 314 LMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAG 373

Query: 311 MKELVQKLLKRMEQNGIVPN 330
              + QK+  RM   G+ P+
Sbjct: 374 KLNVAQKVFNRMVDCGVSPD 393



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/333 (19%), Positives = 130/333 (39%), Gaps = 44/333 (13%)

Query: 41  GCRPDPSVYNALITA--HLHTRDKAK------ALAKALGYFQKMKGMERCKPNIVTYNIL 92
           G  P+ S+  +   A  H H R++ +          A   F +M    R  P+IV +  +
Sbjct: 27  GNNPETSLSRSFSGASHHHHYRERLRNELHCIKFDDAFSLFCEML-QSRPIPSIVDFTRV 85

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           L   A+    D V  L+ ++    ++ D+Y++  ++  + +   +    ++L +M     
Sbjct: 86  LTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGF 145

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           +P I+T   L++ + +   F +   +  S+      P +  +N++I    K R    A  
Sbjct: 146 RPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALE 205

Query: 213 VF-----------------------------------QKMTAMKYTPSFITYECIITMYG 237
           VF                                   + M   K  P+ I +  +I  + 
Sbjct: 206 VFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFV 265

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
              N+  AR ++ E+ +      V T N+++  +C++G   +A  +F+   + G  PD  
Sbjct: 266 KEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVV 325

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           TY  L   + K+   E   KL   M   G+V +
Sbjct: 326 TYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGD 358



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 78/200 (39%)

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           S+   M  ++  P I+ F  ++    K   FD +  ++  + +      L +F  +I  +
Sbjct: 65  SLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCF 124

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            +      A  +  KM  + + PS +T   ++  +   +    A  + D +   G    V
Sbjct: 125 CRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNV 184

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
              N ++   C N     A  +F      G+  D+ TY  L    + +       +LL+ 
Sbjct: 185 VIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRD 244

Query: 322 MEQNGIVPNKRFFLEALETF 341
           M +  I PN  FF   ++TF
Sbjct: 245 MVKRKIDPNVIFFTALIDTF 264


>gi|449455399|ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Cucumis sativus]
          Length = 576

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 144/296 (48%), Gaps = 9/296 (3%)

Query: 37  MRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL--GYFQKMKGMERCKPNIVTYNILLR 94
           M  S  RPD  VYN L+ A+       ++L K +   Y + ++    C P   TY +LL+
Sbjct: 146 MNKSTFRPDVIVYNLLMDAY-----GQRSLYKDVESTYLELLE--SHCIPTEDTYALLLK 198

Query: 95  ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
           A  ++  +++  A+F E+ +  L+P    YN  +D   K G   +   +  RMK + C+P
Sbjct: 199 AYCKSGLLEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQP 258

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
              T+ +LI+ YGK       + +F  +   + KP + TF +++    +  L  KAE +F
Sbjct: 259 TTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIF 318

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           ++M    Y P    Y  ++  Y        A EIF  +  +G +   ++ N M++AY   
Sbjct: 319 EQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRA 378

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           GL  +A  +FE    +G+TP   ++ LL  AY+ A      + ++ +M ++G+ P+
Sbjct: 379 GLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPD 434



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 154/348 (44%), Gaps = 40/348 (11%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+  I  + K G    A+ +F  M+  GC+P    Y  LI  +++ ++    +A+ +  
Sbjct: 227 VYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQPTTDTYTMLI--NVYGKESKSHMAQNI-- 282

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F +M+  +RCKPNI T+  L+ A A+    ++   +F+++ E+   PD+Y YN +M++Y 
Sbjct: 283 FDEMR-TQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYS 341

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL---------- 182
           + G       + S M+   C+PD  ++N+++D+YG+    +  + VF+ +          
Sbjct: 342 RAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMK 401

Query: 183 ------------------------MH-SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
                                   MH S  KP     NSM+  YG+    GK E +F  M
Sbjct: 402 SHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTM 461

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
                     TY  +I +YG    V R  E+F  L     +  V T  + + AY    L 
Sbjct: 462 QKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLY 521

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
                LFE   + G  PD  T K+L  A +     E V  +++ M ++
Sbjct: 522 KRCLELFEKMIDAGCYPDGGTAKVLLSACSSEEQIEQVTNVVRTMHKD 569



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 130/262 (49%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P+++ YN+L+ A  Q      V + + EL ES   P   TY  ++ AY K+G++++ E+
Sbjct: 152 RPDVIVYNLLMDAYGQRSLYKDVESTYLELLESHCIPTEDTYALLLKAYCKSGLLEKAEA 211

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           V + M+     P  I +N  ID   K     K  ++F  +     +PT  T+  +I  YG
Sbjct: 212 VFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQPTTDTYTMLINVYG 271

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           K      A+ +F +M   +  P+  T+  ++          +A EIF+++ + G +  V 
Sbjct: 272 KESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVY 331

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
             NA++E+Y   G P  A  +F    +MG  PD ++Y ++  AY +A + E  Q + + M
Sbjct: 332 AYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEM 391

Query: 323 EQNGIVPNKRFFLEALETFSSS 344
           ++ GI P  +  +  L  +SS+
Sbjct: 392 KRIGITPTMKSHMLLLSAYSSA 413



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 131/254 (51%), Gaps = 8/254 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D   Y+ L+    + G    A  +FS M++ GC PD + YN ++ A+     +A   
Sbjct: 326 YEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAY----GRAGLH 381

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             A   F++MK +    P + ++ +LL A + A NV +   +  ++H+S L PD +  N 
Sbjct: 382 EDAQAVFEEMKRIG-ITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNS 440

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++ YG+ G   +ME + S M+   C+ DI T+N+LI+ YG+    ++ME++F+ L    
Sbjct: 441 MLNLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKN 500

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + T+ S I  Y + +L  +   +F+KM      P   T + +++    C +  +  
Sbjct: 501 LEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAKVLLSA---CSSEEQIE 557

Query: 247 EIFDELSKLGKDMK 260
           ++ + +  + KD+K
Sbjct: 558 QVTNVVRTMHKDLK 571



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 152/358 (42%), Gaps = 44/358 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ L+   G++   +     + E+  S C P    Y  L+ A+     K+  L KA
Sbjct: 154 DVIVYNLLMDAYGQRSLYKDVESTYLELLESHCIPTEDTYALLLKAYC----KSGLLEKA 209

Query: 70  LGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F +M+  G+    P+ + YN  +    +  N  +   +F  +      P   TY  +
Sbjct: 210 EAVFAEMRKYGL---SPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQPTTDTYTML 266

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK------- 180
           ++ YGK       +++   M++ +CKP+I TF  L+++  +    +K E++F+       
Sbjct: 267 INVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGY 326

Query: 181 --------SLMHSKEKPTLP--------------------TFNSMIINYGKARLQGKAEY 212
                   +LM S  +   P                    ++N M+  YG+A L   A+ 
Sbjct: 327 EPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQA 386

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           VF++M  +  TP+  ++  +++ Y    NV++  +I  ++ K G       +N+ML  Y 
Sbjct: 387 VFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYG 446

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             G   + + LF          D STY +L   Y +A   E +++L + +    + P+
Sbjct: 447 RLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPD 504



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 35/220 (15%)

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           M  +  +PD+I +NLL+D+YG+R  +  +E  +  L+ S   PT  T+  ++  Y K+ L
Sbjct: 146 MNKSTFRPDVIVYNLLMDAYGQRSLYKDVESTYLELLESHCIPTEDTYALLLKAYCKSGL 205

Query: 207 QGKAEYVFQKMTAMKYTPSFI-----------------------------------TYEC 231
             KAE VF +M     +PS I                                   TY  
Sbjct: 206 LEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQPTTDTYTM 265

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           +I +YG       A+ IFDE+        + T  A++ A    GL  +A+ +FE     G
Sbjct: 266 LINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAG 325

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             PD   Y  L ++Y++A       ++   M+  G  P++
Sbjct: 326 YEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDR 365


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 155/357 (43%), Gaps = 40/357 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+  I  +   G+   A     EMRN+G  PD + YN +I A    R +    +KA
Sbjct: 571 DAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAA----RCREGKTSKA 626

Query: 70  LGYFQKMKGMERCKPNIVTYNIL-----------------------------------LR 94
           L   ++MK     KPN++TY  L                                   L+
Sbjct: 627 LKLLKEMK-RNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQ 685

Query: 95  ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
           AC+ +R  D +  + + +  + L  DI  YN ++     +GM +    VL  M +    P
Sbjct: 686 ACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAP 745

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           D ITFN LI  + K    D    ++  ++H    P + TFN+++     A   G+A+ V 
Sbjct: 746 DTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVL 805

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
             M  +   P+ +TY+ ++T Y    N   A  ++ E+   G   K ST N+++  +   
Sbjct: 806 SDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKA 865

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           G+  +A  LF      GV   SSTY +L   ++K      V+ LLK M++ G  P+K
Sbjct: 866 GMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGIEVRILLKDMKELGFKPSK 922



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 161/341 (47%), Gaps = 14/341 (4%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKAL 66
           ADT  Y+  +A + ++G  RLA  + SEM   G   D    +  +     T    +A AL
Sbjct: 113 ADTVSYNIFLAALSEQGHGRLAPPVLSEMCKRGVSWDGVTVSTALVGLCRTGLVGEAAAL 172

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A+ L   + + G++     +V +N L+    + +++    A+ + +    +A D+  YN 
Sbjct: 173 AEMLVRGRGIDGLD-----VVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNS 227

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  +  +G       V+ RMK++  +P+++T+  LI  Y K +  D+   +++ ++ S 
Sbjct: 228 LVAGFFHSGDADAALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSG 287

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P + T ++++    +     +A  +F++M  +   P+ +TY  +I         S + 
Sbjct: 288 VLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESL 347

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G  M +    A+++     G   EA  +  ++ +  +TP+  TY +L  A+
Sbjct: 348 GLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAH 407

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
            +A   +  +++L +ME+  ++PN       + TFSS + G
Sbjct: 408 CRAGNIDGAEQVLLQMEEKSVIPN-------VVTFSSIING 441



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 138/313 (44%), Gaps = 6/313 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    K      A  L+  M  SG  PD    +AL+      RD   + A AL  F
Sbjct: 260 YTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGL--CRDGQFSEAYAL--F 315

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M  +    PN VTY  L+ + A+AR   +   L  E+    +  D+  Y  +MD  GK
Sbjct: 316 REMDKIG-VAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGK 374

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G I+E + VL   +S+   P+ +T+ +L+D++ +    D  EQV   +      P + T
Sbjct: 375 EGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVT 434

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           F+S+I    K    GKA    +KM      P+ +TY  +I  +        A +++ ++ 
Sbjct: 435 FSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDML 494

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-ANMK 312
             G +     +++++     NG    A+ LF++    G+  D   Y  L     K  NM 
Sbjct: 495 HEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMP 554

Query: 313 ELVQKLLKRMEQN 325
              +   + ME+N
Sbjct: 555 AAFKVGQELMEKN 567



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/399 (21%), Positives = 167/399 (41%), Gaps = 59/399 (14%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +++  I +   +S +I  + K+G    A     +M++SG  P+   Y  LI        K
Sbjct: 424 EEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFF----K 479

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFK------------ 110
            +    AL  ++ M   E  + N    + L+    +  N++   ALFK            
Sbjct: 480 FQGQEAALDVYRDML-HEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHV 538

Query: 111 -----------------------ELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
                                  EL E  L+PD   YN  ++     G   E +S L  M
Sbjct: 539 NYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEM 598

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           ++   +PD  T+N +I +  +     K  ++ K +  +  KP L T+ ++++   +A + 
Sbjct: 599 RNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVV 658

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL----GKDMKVST 263
            KA+++  +M +  + P+ +T++ ++     C   SR  ++  E+ +L    G    ++ 
Sbjct: 659 KKAKFLLNEMASAGFAPTSLTHQRVLQA---CSG-SRRPDVILEIHELMMGAGLHADITV 714

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N ++   C +G+   A ++ +     G+ PD+ T+  L   + K++  +    +  +M 
Sbjct: 715 YNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQML 774

Query: 324 QNGIVPNKRFFLEALETFSSSLAGSQS----GSAKTDLT 358
             G+ PN       + TF++ L G +S    G A T L+
Sbjct: 775 HQGLSPN-------IATFNTLLGGLESAGRIGEADTVLS 806



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 151/346 (43%), Gaps = 15/346 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R  + D   Y+ L+  + K G    A  +  E+      PD  VYN  I   L T  K 
Sbjct: 530 ERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINC-LCTLGK- 587

Query: 64  KALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
              ++A  + ++M+  G+E   P+  TYN ++ A  +     +   L KE+  + + P++
Sbjct: 588 --FSEAKSFLKEMRNTGLE---PDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNL 642

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TY  ++    + G++K+ + +L+ M S    P  +T   ++ +    +  D + ++ + 
Sbjct: 643 ITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHEL 702

Query: 182 LMHSKEKPTLPTFNSMI---INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           +M +     +  +N+++     +G AR    A  V  +M      P  IT+  +I  +  
Sbjct: 703 MMGAGLHADITVYNTLVHVLCCHGMAR---NATVVLDEMLTRGIAPDTITFNALILGHCK 759

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             ++  A  I+ ++   G    ++T N +L      G   EAD +  +   +G+ P++ T
Sbjct: 760 SSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLT 819

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           Y +L   Y K + K    +L   M   G +P    +   +  F+ +
Sbjct: 820 YDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKA 865



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 123/252 (48%), Gaps = 11/252 (4%)

Query: 37  MRNSGCRPDPSVYNALI---TAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 93
           M  +G   D +VYN L+     H   R+    L + L      +G+    P+ +T+N L+
Sbjct: 703 MMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEML-----TRGI---APDTITFNALI 754

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
               ++ ++D   A++ ++    L+P+I T+N ++      G I E ++VLS MK    +
Sbjct: 755 LGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLE 814

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P+ +T+++L+  Y K+    +  +++  ++     P   T+NS++ ++ KA +  +A+ +
Sbjct: 815 PNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKEL 874

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F +M       +  TY+ ++  +    N    R +  ++ +LG      T+++M  A+  
Sbjct: 875 FSEMKRRGVLHTSSTYDILLNGWSKLRNGIEVRILLKDMKELGFKPSKGTISSMSRAFSR 934

Query: 274 NGLPTEADLLFE 285
            G+  EA  L +
Sbjct: 935 PGMTGEARRLLK 946



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 103/247 (41%), Gaps = 5/247 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD  +Y+ L+ V+   G  R A  +  EM   G  PD   +NALI  H     K+  L  
Sbjct: 710 ADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHC----KSSHLDN 765

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A   + +M   +   PNI T+N LL     A  + + + +  ++ +  L P+  TY+ ++
Sbjct: 766 AFAIYAQML-HQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILV 824

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
             Y K     E   +   M S    P   T+N L+  + K    ++ +++F  +      
Sbjct: 825 TGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGVL 884

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
            T  T++ ++  + K R   +   + + M  + + PS  T   +   +        AR +
Sbjct: 885 HTSSTYDILLNGWSKLRNGIEVRILLKDMKELGFKPSKGTISSMSRAFSRPGMTGEARRL 944

Query: 249 FDELSKL 255
              L K+
Sbjct: 945 LKTLFKV 951



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 94/236 (39%), Gaps = 2/236 (0%)

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           +A D  +YN  + A  + G  +    VLS M       D +T +  +    +     +  
Sbjct: 111 VAADTVSYNIFLAALSEQGHGRLAPPVLSEMCKRGVSWDGVTVSTALVGLCRTGLVGEAA 170

Query: 177 QVFKSLMHSKEKPTLPT--FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
            + + L+  +    L    +N++I  Y K +    A  V ++MT        + Y  ++ 
Sbjct: 171 ALAEMLVRGRGIDGLDVVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVA 230

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
            + +  +   A E+ + +   G +  V T  A++  YC      EA  L+E     GV P
Sbjct: 231 GFFHSGDADAALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLP 290

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
           D  T   L     +         L + M++ G+ PN   +   +++ + +  GS+S
Sbjct: 291 DVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSES 346


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 160/332 (48%), Gaps = 11/332 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEM--RNSGCRPDPSVYNALITAHLHTRD 61
           +R Y  D   +S LI  + K  + + A      M  + S        YN+L    L++  
Sbjct: 402 KRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSL----LNSLC 457

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           KAK + +A   F  M       P++V+Y+IL+    +   + +   L+K++ +    P++
Sbjct: 458 KAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNV 517

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TYN  ++   + G I + + V   M +  C PD+IT++ LI  +   +  D+  ++F++
Sbjct: 518 TTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFET 577

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD- 240
           ++    +P   T+N ++    K     +A  +F+KM      P  +TY  +  +YG+C+ 
Sbjct: 578 MISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTL--LYGFCNV 635

Query: 241 -NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             + +A E+FDE+   G D  V   N +L+ +   G P EA  LF+   +    PD+ ++
Sbjct: 636 GKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSH 695

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQN-GIVPN 330
            ++    +KA   +   ++ +RMEQ+ G  P+
Sbjct: 696 NIMIDGLSKAKRLDDAVEVFERMEQDHGCSPD 727



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 141/306 (46%), Gaps = 6/306 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  +R ++ D   YS LI    K  +   A  L+ +M +  C P+ + YNA +   +   
Sbjct: 472 MVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLM--- 528

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +   +A A G +++M     C P+++TY+ L+   + AR  DQ + LF+ +      P+
Sbjct: 529 -RKGRIADAQGVYEEMVAAG-CSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPN 586

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TYN ++    K     E   +  +M    C PD +T+  L+  +      ++  +VF 
Sbjct: 587 AVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFD 646

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++     P +  +N ++  + +A   G+A+ +FQ M + +  P  +++  +I       
Sbjct: 647 EMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAK 706

Query: 241 NVSRAREIFDELSK-LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            +  A E+F+ + +  G    + T N+++   C     +EA  +F+    + ++PD   +
Sbjct: 707 RLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAF 766

Query: 300 KLLYKA 305
            +L +A
Sbjct: 767 NVLLEA 772



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 147/319 (46%), Gaps = 14/319 (4%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           +G    +I  + K G+   A+ L   M   G  PD + ++ LI        KA  + +A 
Sbjct: 374 SGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELC----KADKIQEAQ 429

Query: 71  GYFQKM-KGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL-HESILAPDIYTYNGVM 128
            + Q M + +     +  +YN LL +  +A+ V Q  A+F  +  E    PD+ +Y+ ++
Sbjct: 430 EFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILI 489

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D + K   +   E +  +M    C P++ T+N  ++   ++      + V++ ++ +   
Sbjct: 490 DGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCS 549

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV--SRAR 246
           P + T++++I  +  AR   +A  +F+ M +    P+ +TY C+  ++G C       A 
Sbjct: 550 PDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCL--LHGLCKESKPDEAH 607

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+F ++ + G D    T   +L  +C  G   +A  +F+   + G  PD   Y  L K +
Sbjct: 608 ELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGF 667

Query: 307 TKAN----MKELVQKLLKR 321
            +A      K+L Q ++ R
Sbjct: 668 FRAGKPGEAKQLFQVMVSR 686



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 135/321 (42%), Gaps = 8/321 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y  LI ++ + G+   A     E+     +P     +++I        KA  +  AL  
Sbjct: 341 VYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELC----KAGRVDSALSL 396

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT--YNGVMDA 130
            + M     C P++ T+++L+    +A  + +     + +   I +       YN ++++
Sbjct: 397 LETMIKRGYC-PDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNS 455

Query: 131 YGKNGMIKEMESVLSRMKSNQC-KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
             K   + +  ++ S M S +   PD++++++LID + K     + E+++K ++     P
Sbjct: 456 LCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVP 515

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+N+ +    +      A+ V+++M A   +P  ITY  +I  +       +A E+F
Sbjct: 516 NVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELF 575

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           + +   G      T N +L   C    P EA  LF      G  PD  TY  L   +   
Sbjct: 576 ETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNV 635

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              E   ++   M   G  P+
Sbjct: 636 GKIEQAVEVFDEMVSKGHDPD 656



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/367 (19%), Positives = 145/367 (39%), Gaps = 68/367 (18%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAH--LHTRDKA-----------KALAKALGYFQKMKGM 79
           LF  M  SGC+PD ++Y+ ++ AH  L   D+A           KA    + +   + G+
Sbjct: 256 LFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTAFLSGL 315

Query: 80  ----------ERCK-------PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
                     E C+        +   Y++L+R   ++  +D+      E+    + P   
Sbjct: 316 CKSGKIEQAFEACRTMQESLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSG 375

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV---- 178
           T + V+    K G +    S+L  M      PD+ T ++LI+   K     + ++     
Sbjct: 376 TCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGM 435

Query: 179 -------------FKSLMHSKEK---------------------PTLPTFNSMIINYGKA 204
                        + SL++S  K                     P + +++ +I  + K 
Sbjct: 436 DRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKI 495

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
              G+AE ++++M  +   P+  TY   +        ++ A+ +++E+   G    V T 
Sbjct: 496 DELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITY 555

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           + ++  + +     +A  LFE   + G  P++ TY  L     K +  +   +L ++M +
Sbjct: 556 STLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVE 615

Query: 325 NGIVPNK 331
            G  P++
Sbjct: 616 RGCDPDR 622



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 5/132 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+    + G+   A  LF  M +  C+PD   +N +I        KAK L  A
Sbjct: 656 DVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDG----LSKAKRLDDA 711

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +  F++M+    C P++VTYN L+      + + +   +FKE+    L+PD + +N +++
Sbjct: 712 VEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLE 771

Query: 130 AYGKNGMIKEME 141
           A  K G++ + E
Sbjct: 772 AI-KCGIVYQFE 782



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 67/330 (20%), Positives = 137/330 (41%), Gaps = 40/330 (12%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+  F  ++    + D   YN L+   +  RD    L +A   F+KM   +   PN  TY
Sbjct: 113 ALTFFRWLQARNFKHDVFTYNCLLDKLIRHRD----LKQAGQVFEKMVA-QGVVPNGFTY 167

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
            +L+++    RN D+    F E+ +    P    Y  V +     G   E   V  R   
Sbjct: 168 AVLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLE 227

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
            +   +++    L+ ++  +    +  ++F++++ S  KP    ++ M++ + K     +
Sbjct: 228 KRVAVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDE 287

Query: 210 AEYVFQKMTAMKYTP-------SFITYEC----IITMYGYC----DNVSRAREIFDELSK 254
           A  +F +M      P       +F++  C    I   +  C    +++S ++ ++D L +
Sbjct: 288 AFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQPVYDMLIR 347

Query: 255 L------------------GKDMKVS--TLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
           L                  G++++ S  T +++++  C  G    A  L E     G  P
Sbjct: 348 LLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCP 407

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           D +T+ +L     KA+  +  Q+ L+ M++
Sbjct: 408 DMATHSMLINELCKADKIQEAQEFLQGMDR 437


>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
          Length = 806

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 153/312 (49%), Gaps = 13/312 (4%)

Query: 22  GKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGM 79
           G K Q  + +W   +  N G   + +  NALI    H   + K + +A    Q M  KG+
Sbjct: 445 GGKHQEAVGIWF--KTLNKGLGVNLATSNALI----HGLCEGKYMKEATKVIQTMLNKGI 498

Query: 80  ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
           E    + +TYNI++R C +   +++   L  ++      PD++T+N ++ AY   G ++E
Sbjct: 499 EL---DSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEE 555

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
              +L +MK+   +PDI+++  +ID + K +   K ++    LM    KP +  +N++I 
Sbjct: 556 TFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIG 615

Query: 200 NYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 258
            YG+   + G  + V + M +    P+ +TY  ++    +   V  A+ IF +  +   D
Sbjct: 616 GYGRNGDISGAIDAV-ETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVD 674

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
           + V     M++ YC  G   EA   FE   + G++P+  TY  L  AY+K+   E   KL
Sbjct: 675 LGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKL 734

Query: 319 LKRMEQNGIVPN 330
              M  +G++P+
Sbjct: 735 FDEMVGSGVIPD 746



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 103/235 (43%), Gaps = 4/235 (1%)

Query: 34  FSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 93
           F  + + G  P     NA + A +    +A  L  A   F +M+       N  +Y  ++
Sbjct: 173 FRVLSSRGAPPSIKTCNAFLEALV----RAGQLDAAREVFDEMRESRNVALNEYSYTAMI 228

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
           +A  +A  VD    +  EL  + L P + TYN +MDA  K+G ++E   +  RM+     
Sbjct: 229 KALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMT 288

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P ++TF +LI+   + + F ++  V + +      P    +N +I  + +     +A  +
Sbjct: 289 PSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRL 348

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           F +M   K  P+ +TY  I         + RA  I +++  +G  +     N ++
Sbjct: 349 FDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVV 403



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 117/251 (46%), Gaps = 6/251 (2%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESI-LAPDIYTYNGVMDAYGKNGMIKEMES 142
           P+I T N  L A  +A  +D    +F E+ ES  +A + Y+Y  ++ A  K G +     
Sbjct: 183 PSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALCKAGKVDAGFE 242

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +L+ +     +P ++T+N+L+D+  K    ++  ++   +      P++ TF  +I    
Sbjct: 243 MLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLA 302

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           +    G+   V Q+M  +  +P+ + Y  +I  +    + S+A  +FDE+  + K MK +
Sbjct: 303 RGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEM--VLKKMKPT 360

Query: 263 --TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK-ELVQKLL 319
             T N + +A C  G    A+ + E+  ++G+T     +  +     +   + E V  + 
Sbjct: 361 AVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSIT 420

Query: 320 KRMEQNGIVPN 330
             M   G+ PN
Sbjct: 421 NEMVTRGMRPN 431



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 138/350 (39%), Gaps = 39/350 (11%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA------- 65
           IY++LI    +KG    A+ LF EM     +P    YN +  A     +  +A       
Sbjct: 328 IYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDM 387

Query: 66  ----LAKALGYF--------QKMKGMERC------------KPNIVTYNILLRA-CAQAR 100
               +    G F        Q+ + +E              +PN       +R  C   +
Sbjct: 388 LSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGK 447

Query: 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
           + + V   FK L++  L  ++ T N ++    +   +KE   V+  M +   + D IT+N
Sbjct: 448 HQEAVGIWFKTLNKG-LGVNLATSNALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYN 506

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
           ++I    K    ++  ++   +     KP L TFN+++  Y      GK E  F  +  M
Sbjct: 507 IMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNL---GKMEETFHLLDQM 563

Query: 221 K---YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
           K     P  ++Y  II  +    ++ +A+E   EL   G    V   NA++  Y  NG  
Sbjct: 564 KTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDI 623

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           + A    E   + G+ P + TY  L      A + E  + +  +  +N +
Sbjct: 624 SGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNV 673



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 7/163 (4%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ LI   G+ G    A+     M+++G +P    Y +L+    H    A  + +A   
Sbjct: 609 IYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCH----AGLVEEAKTI 664

Query: 73  FQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           F + +        ++ Y I+++  C   + V+ V A F+E+    ++P+  TY  +M AY
Sbjct: 665 FSQAR-ENNVDLGVIGYTIMIQGYCKLGKMVEAV-AYFEEMRSRGISPNKLTYTTLMYAY 722

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
            K+G  +E   +   M  +   PD IT+  LI    +  + DK
Sbjct: 723 SKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEVNSLDK 765



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 1/161 (0%)

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP-SFITYECIITMYG 237
           F+ L      P++ T N+ +    +A     A  VF +M   +    +  +Y  +I    
Sbjct: 173 FRVLSSRGAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALC 232

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
               V    E+  EL + G    V T N +++A C +G   EA  L       G+TP   
Sbjct: 233 KAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVV 292

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           T+ +L     +      V  +L+ MEQ G+ PN+  + E +
Sbjct: 293 TFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELI 333



 Score = 45.1 bits (105), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 12/151 (7%)

Query: 192 PTFNSMIINYGKARLQG---KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P+ + +I  +  +  QG   +A   F+ +++    PS  T    +        +  ARE+
Sbjct: 148 PSSDFLIHTFITSPAQGSLCRAADAFRVLSSRGAPPSIKTCNAFLEALVRAGQLDAAREV 207

Query: 249 FDELSKLGKDMKVSTLN-----AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           FDE+    ++ +   LN     AM++A C  G       +       G+ P   TY +L 
Sbjct: 208 FDEM----RESRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLM 263

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            A  K+   E   +L  RMEQ G+ P+   F
Sbjct: 264 DALCKSGRVEEAFRLKGRMEQGGMTPSVVTF 294



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 10  DTGIYSKLIAVMG--KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           D G+    I + G  K G+   A+  F EMR+ G  P+   Y  L+ A+     K+    
Sbjct: 674 DLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAY----SKSGNSE 729

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           +A   F +M G     P+ +TY  L+  C++  ++D+      EL    L  D   YN
Sbjct: 730 EASKLFDEMVG-SGVIPDNITYGTLIARCSEVNSLDKDIGHTAELSSGALTKDDRMYN 786


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 153/309 (49%), Gaps = 13/309 (4%)

Query: 25  GQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP 84
           G    A+ L  EM+++G  PD   +  +ITA  +  D    L  A+ + + M     C P
Sbjct: 4   GDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGD----LDGAMDHLRSMG----CDP 55

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           N+VTY  L+ A A+A+ +++   L +E+ E    P++ TYN ++DA  K  M+   + V+
Sbjct: 56  NVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVV 115

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
            +M      P+++TFN L+D + KR   D   ++   ++    +P + T++++I    K+
Sbjct: 116 KKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKS 175

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVS 262
           +   +A+ V ++M A   TP   TY  +I  +G C  D +  A ++   ++  G    V 
Sbjct: 176 QKFLEAKEVLEEMKASGVTPDAFTYSALI--HGLCKADKIEEAEQMLRRMAGSGCTPDVV 233

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
             ++++ A+C +G   EA    +       +PD  TY  +     K       Q +L +M
Sbjct: 234 VYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQM 293

Query: 323 EQNG-IVPN 330
           +++G ++P+
Sbjct: 294 QESGDVLPD 302



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 155/351 (44%), Gaps = 37/351 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLHTRDKAKALAKAL- 70
           Y+ LIA   +  +   AM L  EMR  GC P+   YN L+ A   L     A+ + K + 
Sbjct: 60  YTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMI 119

Query: 71  ----------------GYFQK--------------MKGMERCKPNIVTYNILLRACAQAR 100
                           G+ ++               KGM   +PN+VTY+ L+    +++
Sbjct: 120 EGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGM---RPNVVTYSALIDGLCKSQ 176

Query: 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
              +   + +E+  S + PD +TY+ ++    K   I+E E +L RM  + C PD++ ++
Sbjct: 177 KFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYS 236

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT-A 219
            +I ++ K     + ++  + +   ++ P + T+N++I    K     +A+ +  +M  +
Sbjct: 237 SIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQES 296

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
               P  +TY  +I      D +  A+++ D + K G +  V T   +++  C  G   E
Sbjct: 297 GDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEE 356

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           A+ L +     G  P+  TY  L     KA   +  +++++ M   G  PN
Sbjct: 357 AEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPN 407



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 152/312 (48%), Gaps = 8/312 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI  + K  +   A  +  EM+ SG  PD   Y+ALI    H   KA  + +A    
Sbjct: 165 YSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALI----HGLCKADKIEEAEQML 220

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M G   C P++V Y+ ++ A  ++  + +     +E+ +   +PD+ TYN V+D   K
Sbjct: 221 RRMAG-SGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCK 279

Query: 134 NGMIKEMESVLSRMK-SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
            G I E + +L +M+ S    PD++T++ +I+   K     + +++   +  +   P + 
Sbjct: 280 LGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVV 339

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+ ++I    K     +AEY+ Q M      P+ +TY  +I+       V  A  + +E+
Sbjct: 340 TYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEM 399

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN--MGVTPDSSTYKLLYKAYTKAN 310
              G    + T N M+   C++G   EA  L +   +     +PD++TY+ +  A   ++
Sbjct: 400 RNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSD 459

Query: 311 MKELVQKLLKRM 322
           + +  ++LL++M
Sbjct: 460 LVQEAEQLLEQM 471



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 120/242 (49%), Gaps = 13/242 (5%)

Query: 108 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
           L +E+  +  APD +T+  ++ A    G   +++  +  ++S  C P+++T+  LI ++ 
Sbjct: 12  LLEEMKSAGFAPDAFTHTPIITAMANAG---DLDGAMDHLRSMGCDPNVVTYTALIAAFA 68

Query: 168 KRQAFDKMEQVFKSLMHSKEK---PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 224
           + +   K+E+  K L   +E+   P L T+N ++    K  + G A+ V +KM    + P
Sbjct: 69  RAK---KLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAP 125

Query: 225 SFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
           + +T+  ++   G+C   NV  AR++   +   G    V T +A+++  C +    EA  
Sbjct: 126 NVMTFNSLVD--GFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKE 183

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           + E     GVTPD+ TY  L     KA+  E  +++L+RM  +G  P+   +   +  F 
Sbjct: 184 VLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFC 243

Query: 343 SS 344
            S
Sbjct: 244 KS 245



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 137/311 (44%), Gaps = 6/311 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L+    K+G    A  L   M   G RP+   Y+ALI        K++   +A    
Sbjct: 130 FNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLC----KSQKFLEAKEVL 185

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++MK      P+  TY+ L+    +A  +++   + + +  S   PD+  Y+ ++ A+ K
Sbjct: 186 EEMKA-SGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCK 244

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLP 192
           +G + E +  L  M+  +  PD++T+N +ID   K     + + +   +  S +  P + 
Sbjct: 245 SGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVV 304

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T++++I    K+ +  +A+ +  +M      P  +TY  II     C  +  A  +   +
Sbjct: 305 TYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGM 364

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            + G    V T   ++   C      EA+ + E   N G  P+  TY  +      +   
Sbjct: 365 KRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRI 424

Query: 313 ELVQKLLKRME 323
           +  Q+L++RM+
Sbjct: 425 KEAQQLVQRMK 435



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 7/184 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ+    + D   YS +I  + K      A  L   M  +GC PD   Y  +I       
Sbjct: 293 MQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLC--- 349

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K   L +A    Q MK    C PN+VTY  L+    +AR VD+   + +E+  +   P+
Sbjct: 350 -KCGRLEEAEYLLQGMK-RAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPN 407

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSN--QCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           + TYN +++    +G IKE + ++ RMK    +C PD  T+  ++++        + EQ+
Sbjct: 408 LVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQL 467

Query: 179 FKSL 182
            + +
Sbjct: 468 LEQM 471


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 154/327 (47%), Gaps = 9/327 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI  M  +G    A+ + S++ + GC+PD   Y  ++ + L   ++ K + + 
Sbjct: 231 DIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKS-LCGSERWKEVEE- 288

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F +M    +C P+ VT+N ++ +  Q   VD+   +   + E    PDI TY+ ++D
Sbjct: 289 --LFAEMAS-NKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILD 345

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
                G + +   +LSR+KS  CKPD I +  ++      + ++  E++   ++ S   P
Sbjct: 346 GLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPP 405

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRARE 247
              TFN++I +  +  L  +A  V ++M+     P  +TY  II   G C+   +  A E
Sbjct: 406 DEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIID--GLCNERCIDDAME 463

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +   L   G    + T N +L+  C      +A+ L  N  +    PD++T+  +  +  
Sbjct: 464 LLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLC 523

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFF 334
           +  +     + LK M +NG +PN+  +
Sbjct: 524 QKGLLLQAIETLKIMAENGCIPNQSTY 550



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 152/343 (44%), Gaps = 25/343 (7%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I D   YS ++  +   G+   A+ L S +++ GC+PD   Y  ++              
Sbjct: 334 IPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVL-------------- 379

Query: 68  KALGYFQKMKGMER---------CKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
           K L   ++ +  E          C P+ VT+N ++ +  Q   VD+   + +++ E+   
Sbjct: 380 KGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCN 439

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PDI TYN ++D       I +   +LS ++S  CKPDI+TFN L+        ++  EQ+
Sbjct: 440 PDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQL 499

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
             ++MHS   P   TFN++I +  +  L  +A    + M      P+  TY  ++     
Sbjct: 500 MVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLK 559

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
                 A ++   ++    D+   T N ++      G   EA  L     + G++PD+ T
Sbjct: 560 AGKTQEALKLLSGMTNGTPDLI--TYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTIT 617

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           Y+ L     + +  +   ++L R++  G+ P+  F+ + L  F
Sbjct: 618 YRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGF 660



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 141/316 (44%), Gaps = 24/316 (7%)

Query: 44  PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNV 102
           PD   +N LI A L  R +   +  AL  F  M  + R C P++VTY+ILL A  +A   
Sbjct: 160 PDTFTFNPLIRA-LCVRGR---VPDALAVFDDM--LHRGCSPSVVTYSILLDATCKASGY 213

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
            Q   L  E+      PDI TYN +++A    G + E  ++LS + S+ CKPD +T+  +
Sbjct: 214 RQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPV 273

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           + S    + + ++E++F  +  +K  P   TFN+++ +  +  L  +A  V   M+    
Sbjct: 274 LKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGC 333

Query: 223 TPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
            P  +TY  I+   G CD   V  A E+   L   G          +L+  C       A
Sbjct: 334 IPDIVTYSSILD--GLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHA 391

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP----------- 329
           + L          PD  T+  +  +  +  + +   K++++M +NG  P           
Sbjct: 392 EELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDG 451

Query: 330 --NKRFFLEALETFSS 343
             N+R   +A+E  S+
Sbjct: 452 LCNERCIDDAMELLSN 467



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 146/324 (45%), Gaps = 17/324 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALA 67
           D   ++ +IA + +KG    A+ +  +M  +GC PD   YN++I    + R  D A  L 
Sbjct: 406 DEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELL 465

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
             L  +        CKP+IVT+N LL+        +    L   +  S   PD  T+N V
Sbjct: 466 SNLQSYG-------CKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTV 518

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH-SK 186
           + +  + G++ +    L  M  N C P+  T+N+++D+  K     K ++  K L   + 
Sbjct: 519 ITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAG---KTQEALKLLSGMTN 575

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSR 244
             P L T+N++I N  KA    +A  + + M +   +P  ITY  +   YG C  D   R
Sbjct: 576 GTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSL--AYGICREDGTDR 633

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  +   L  +G     +  N +L  +C N     A   F +  + G  PD STY +L +
Sbjct: 634 AIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLE 693

Query: 305 AYTKANMKELVQKLLKRMEQNGIV 328
           A     + +  ++LL  +   G++
Sbjct: 694 ALAYECLLDEAKQLLVNLCSLGVL 717



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 142/374 (37%), Gaps = 65/374 (17%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL------- 66
           YS L+    K    R AM L  EMR  GC PD   YN LI A  +  D  +AL       
Sbjct: 200 YSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLP 259

Query: 67  -----AKALGYFQKMK---GMER---------------CKPNIVTYNILLRACAQARNVD 103
                  A+ Y   +K   G ER               C P+ VT+N ++ +  Q   VD
Sbjct: 260 SHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVD 319

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS-------------- 149
           +   +   + E    PDI TY+ ++D     G + +   +LSR+KS              
Sbjct: 320 RAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVL 379

Query: 150 ---------------------NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
                                + C PD +TFN +I S  ++   D+  +V + +  +   
Sbjct: 380 KGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCN 439

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P + T+NS+I      R    A  +   + +    P  +T+  ++      D    A ++
Sbjct: 440 PDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQL 499

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
              +         +T N ++ + C  GL  +A    +     G  P+ STY ++  A  K
Sbjct: 500 MVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLK 559

Query: 309 ANMKELVQKLLKRM 322
           A   +   KLL  M
Sbjct: 560 AGKTQEALKLLSGM 573



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 11/211 (5%)

Query: 140 MESVLSRMKSNQCKP-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 198
           ++S+ S   S +C P  ++  N+LI            E+VF +L  S    T+ T+N+M+
Sbjct: 81  VDSIASGGGSGKCLPLPVVPCNILIKRLCSGGRVADAERVFATLGASA---TVVTYNTMV 137

Query: 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 258
             Y +A   G+ E   + ++ M + P   T+  +I        V  A  +FD++   G  
Sbjct: 138 NGYCRA---GRIEDARRLISGMPFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCS 194

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
             V T + +L+A C      +A +L +     G  PD  TY +L  A       +    +
Sbjct: 195 PSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNI 254

Query: 319 LKRMEQNGIVPNKRFFLEALETFSSSLAGSQ 349
           L  +  +G  P+   +   L+    SL GS+
Sbjct: 255 LSDLPSHGCKPDAVTYTPVLK----SLCGSE 281



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 11/177 (6%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I +   Y+ ++  + K G+T+ A+ L S M N    PD   YN +I+       KA  + 
Sbjct: 544 IPNQSTYNIVVDALLKAGKTQEALKLLSGMTNG--TPDLITYNTVIS----NITKAGKME 597

Query: 68  KALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           +AL   + M   G+    P+ +TY  L     +    D+   +   L +  L+PD   YN
Sbjct: 598 EALDLLRVMVSNGL---SPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYN 654

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            ++  + +N          + M S+ C PD  T+ +L+++       D+ +Q+  +L
Sbjct: 655 DILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLLVNL 711


>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 845

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 153/309 (49%), Gaps = 5/309 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q  +  D   Y+ ++  +G+  Q      L  EM   GC+P+   YN LI    H+ 
Sbjct: 339 LKRQPGFKHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDGCKPNTVTYNRLI----HSY 394

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +A  L +A+  F++M+    C+P+ VTY  L+   A+A  +D    +++ +  + L+PD
Sbjct: 395 GRANYLNEAMNVFKQMQ-EAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPD 453

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            +TY+ +++  GK G +     +   M    C P+++TFN++I  + K + ++   ++++
Sbjct: 454 TFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYR 513

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            + ++  +P   T++ ++   G      +AE VF +M    + P    Y  ++ ++G   
Sbjct: 514 DMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAG 573

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           NV +A + + E+   G    V T N++L  +      +EA  L ++   +G+ P   TY 
Sbjct: 574 NVEKAWQWYQEMLHAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYT 633

Query: 301 LLYKAYTKA 309
           LL    T A
Sbjct: 634 LLLSCCTDA 642



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 121/275 (44%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A ALG+F  +K     K +  TY  ++    +A+    +N L  E+ +    P+  TYN 
Sbjct: 330 ANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDGCKPNTVTYNR 389

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++ +YG+   + E  +V  +M+   C+PD +T+  LID + K    D    +++ +  + 
Sbjct: 390 LIHSYGRANYLNEAMNVFKQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAG 449

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P   T++ +I   GKA     A  +F +M     TP+ +T+  +I ++    N   A 
Sbjct: 450 LSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETAL 509

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           +++ ++   G      T + ++E     G   EA+ +F         PD   Y LL   +
Sbjct: 510 KLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLW 569

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            KA   E   +  + M   G+ PN       L TF
Sbjct: 570 GKAGNVEKAWQWYQEMLHAGLRPNVPTCNSLLSTF 604



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/322 (20%), Positives = 127/322 (39%), Gaps = 45/322 (13%)

Query: 56  HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 115
           ++H+ D    ++   G+ +  + M R  P   T     + C     V+ V+ + +     
Sbjct: 243 NVHSSDDRTIISSVEGFGKPSREMMRVTPG--TAPTPRQYCNPGYVVENVSGILRRFKWG 300

Query: 116 ILAPD-IYTYNGVMDAYGKNGMIKEMES-------------------------------- 142
             A + ++ +   MDAY  N ++K+M++                                
Sbjct: 301 HAAEEALHNFGFRMDAYQANQVLKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLG 360

Query: 143 ----------VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
                     +L  M  + CKP+ +T+N LI SYG+    ++   VFK +  +  +P   
Sbjct: 361 RAKQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGRANYLNEAMNVFKQMQEAGCEPDRV 420

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+ ++I  + KA     A  ++Q+M A   +P   TY  II   G   ++  A  +F E+
Sbjct: 421 TYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEM 480

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G    + T N M+  +        A  L+ +  N G  PD  TY ++ +        
Sbjct: 481 VGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFL 540

Query: 313 ELVQKLLKRMEQNGIVPNKRFF 334
           E  + +   M++   VP++  +
Sbjct: 541 EEAEGVFAEMQRKNWVPDEPVY 562


>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1429

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 162/348 (46%), Gaps = 24/348 (6%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           + WY  +  + + ++AV+GK  Q  LA+ +F     S       VYNA++  +  T    
Sbjct: 169 RHWYSPNARMLATILAVLGKANQEALAVEIFIRA-ESTVDNTVQVYNAMMGVYART---- 223

Query: 64  KALAKALGYFQKMKGM-----ER-CKPNIVTYNIL----LRACAQARNVDQVNALFKELH 113
                  G F K++GM     ER C+P++V++N L    L+A A   NV     L  E+ 
Sbjct: 224 -------GRFNKVQGMLDLMRERGCEPDLVSFNTLINARLKAGAMTPNV--AIELLNEVR 274

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
            S L PDI TYN ++ A  +   ++E   V   M+++ C+PD+ T+N +I  YG+     
Sbjct: 275 RSGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYGRCGFSG 334

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           K EQ+FK L      P   T+NS++  + +     K + +  +M  M +    +TY  II
Sbjct: 335 KAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTII 394

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
            MYG       A +++ ++   G+     T   ++++        EA  +     N+GV 
Sbjct: 395 HMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEMLNIGVK 454

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           P   TY  L   Y +A  +   ++    M ++GI P++  +   L+ F
Sbjct: 455 PTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVF 502



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 140/296 (47%), Gaps = 5/296 (1%)

Query: 29  LAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88
           +A+ L +E+R SG RPD   YN LI+A      +   L +A+  F  M+    C+P++ T
Sbjct: 265 VAIELLNEVRRSGLRPDIITYNTLISAC----SRESNLEEAVKVFDDMEA-HYCQPDLWT 319

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN ++    +     +   LFKEL      PD  TYN ++ A+ + G + +++ + + M 
Sbjct: 320 YNAMISVYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMV 379

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
                 D +T+N +I  YGK+       Q+++ +  S   P   T+  +I + GKA    
Sbjct: 380 QMGFIRDEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMV 439

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           +A  V  +M  +   P+  TY  +I  Y        A E FD + + G        + ML
Sbjct: 440 EAANVMSEMLNIGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVML 499

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           + +      T+A +L+      G+TPD + Y  + +   + N  E +Q++++ ME+
Sbjct: 500 DVFLRFDEATKAMMLYREMVRDGITPDPTVYGAMLRNLGRENKVEDIQRIIRDMEE 555



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 149/325 (45%), Gaps = 5/325 (1%)

Query: 3    KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
            +QR    D  +++ LI      G    A  +F+ M   G  P     N L+ A L    +
Sbjct: 762  RQRCTNVDRKVWNALIQAYAASGCYEQARAVFNTMMRDGPSPTVDSINGLLQA-LIVDGR 820

Query: 63   AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
             + L       Q M G +  K +I+   ++L A A+  N+ +   +++ +  +   P ++
Sbjct: 821  LEELYVVTQEIQDM-GFQISKSSIL---LILDAFARVSNIAEAKKIYQGMKAAGYFPTMH 876

Query: 123  TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
             Y  ++    K   ++++E++++ M+    +PD+  +N ++  Y     F K  Q+++ +
Sbjct: 877  LYRIMIGLLCKGKRVRDVEAMVTEMEEAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRI 936

Query: 183  MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 +P   T+N++I+ Y +     +   +  +M  +   P   TY+ +I  +G    V
Sbjct: 937  KEDGLQPDEDTYNTLIVMYCRDHRPEEGCSLMHEMRRIGLEPKLDTYKSLIAAFGKQQLV 996

Query: 243  SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
              A E+F+EL   G  +  S  + M++ Y  +G  ++A+ L     + GV P  +T  LL
Sbjct: 997  VDAEELFEELLSKGSKLDRSFYHIMMKIYRNSGNHSKAEKLLSMMKDAGVEPTIATMHLL 1056

Query: 303  YKAYTKANMKELVQKLLKRMEQNGI 327
              +Y  +   +  +K+L  +++ G+
Sbjct: 1057 MVSYGSSGQPQEAEKVLTNLKEMGL 1081



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/382 (19%), Positives = 159/382 (41%), Gaps = 37/382 (9%)

Query: 6    WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI----------TA 55
            W+     +Y  LI    +   T  A  +FS+MR +G +P  S+Y +++          TA
Sbjct: 659  WFTGSCTMYESLIQCCEENEFTAEASQIFSDMRFNGVKPSKSLYRSMVLMYCKMGFPETA 718

Query: 56   H----------------------LHTRDKAKALAKALGYFQKMKGMERC-KPNIVTYNIL 92
            H                      + T  K K   KA      ++  +RC   +   +N L
Sbjct: 719  HYLIDLAEIEGMPFDKISIDVAVIETYGKLKLWQKAESLVGNLR--QRCTNVDRKVWNAL 776

Query: 93   LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
            ++A A +   +Q  A+F  +     +P + + NG++ A   +G ++E+  V   ++    
Sbjct: 777  IQAYAASGCYEQARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLEELYVVTQEIQDMGF 836

Query: 153  KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            +    +  L++D++ +     + +++++ +  +   PT+  +  MI    K +     E 
Sbjct: 837  QISKSSILLILDAFARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEA 896

Query: 213  VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
            +  +M    + P    +  ++ +Y   D+  +  +I+  + + G      T N ++  YC
Sbjct: 897  MVTEMEEAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYC 956

Query: 273  MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             +  P E   L      +G+ P   TYK L  A+ K  +    ++L + +   G   ++ 
Sbjct: 957  RDHRPEEGCSLMHEMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRS 1016

Query: 333  FFLEALETFSSSLAGSQSGSAK 354
            F+   ++ + +S  G+ S + K
Sbjct: 1017 FYHIMMKIYRNS--GNHSKAEK 1036



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/254 (20%), Positives = 108/254 (42%)

Query: 83   KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
            +P++  +N +LR      +  +   +++ + E  L PD  TYN ++  Y ++   +E  S
Sbjct: 907  RPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEGCS 966

Query: 143  VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
            ++  M+    +P + T+  LI ++GK+Q     E++F+ L+    K     ++ M+  Y 
Sbjct: 967  LMHEMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKIYR 1026

Query: 203  KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
             +    KAE +   M      P+  T   ++  YG       A ++   L ++G  +   
Sbjct: 1027 NSGNHSKAEKLLSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLTNLKEMGLSLSTL 1086

Query: 263  TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
              +++++AY  N   +            G+ PD   +    +A + +        LL+ +
Sbjct: 1087 PYSSVIDAYLKNKDYSVGIQKLVEMKKEGLEPDHRIWTCFIRAASLSEHTHDAILLLQAL 1146

Query: 323  EQNGIVPNKRFFLE 336
            + +G     R   E
Sbjct: 1147 QDSGFDLPSRLITE 1160


>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
 gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
          Length = 953

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 154/363 (42%), Gaps = 40/363 (11%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R    D  +Y+  I  + + G+   A     EMRN+G  PD + YN +I+A     + +
Sbjct: 567 ERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTS 626

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP---- 119
           KAL        +MK     KPN++TY  L+    +A  V++   L  E+  +   P    
Sbjct: 627 KALK----LLNEMK-WSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLT 681

Query: 120 -------------------------------DIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
                                          DI  YN ++     +GM ++   VL  M 
Sbjct: 682 YRRVLQACSGSRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEML 741

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
                PD ITFN LI  + K    D     +  ++H    P + TFN+++     A   G
Sbjct: 742 GRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIG 801

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           +A+ V  +M  M   P+ +TY+ ++T Y    N   A  ++ E+   G   K ST N+++
Sbjct: 802 EADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLI 861

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             +   G+  +A  LF      GV   SSTY +L   ++K      V+ LLK M++ G  
Sbjct: 862 SDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGTEVRILLKDMKELGFK 921

Query: 329 PNK 331
           P+K
Sbjct: 922 PSK 924



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 141/313 (45%), Gaps = 6/313 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI    K  +   A  L+  M  SG  PD    +AL+      RD   + A AL  F
Sbjct: 262 HTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGL--CRDGRFSEAYAL--F 317

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M  +    PN VTY   + + A+ + V++   L  E+    +A D+  Y  VMD  GK
Sbjct: 318 REMDKIG-VAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGK 376

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G I+E + VL    S+   P+ +T+ +L+D++ +    D  EQ+   +      P + T
Sbjct: 377 EGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVT 436

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           F+S++    K     KA    +KM      P+ +TY  +I  +  C     A +++ ++ 
Sbjct: 437 FSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDML 496

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA-YTKANMK 312
             G +     +++++     NG   EA+ LF++    G+  D   Y  L    +   NM 
Sbjct: 497 HEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMP 556

Query: 313 ELVQKLLKRMEQN 325
             ++   + ME+N
Sbjct: 557 AALKVGQELMERN 569



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 156/346 (45%), Gaps = 14/346 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--D 61
           Q    ADT  Y+  +A + ++G  RLA  + SEM   G   D    +  +     T    
Sbjct: 110 QPQVAADTVSYNIFLAGLSEQGHGRLAPPVLSEMCKRGVPWDGVTMSTALVGLSRTGLVG 169

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           +A ALA+ L   + + G+      +V +N L+    + +++    A+ + +    L+ D+
Sbjct: 170 EAAALAEMLVRGRGIDGL-----GVVGWNALIDGYCKVQDMAAALAVVERMTTQGLSLDV 224

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
             YN ++  +  +G       V  RMK++  +P ++T   LI  Y K +  ++   +++ 
Sbjct: 225 VGYNTLVAGFFYSGDADAAWEVAERMKADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEG 284

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++ S   P + T ++++    +     +A  +F++M  +   P+ +TY   I        
Sbjct: 285 MVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQR 344

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           V+ +  +  E+   G  M +     +++     G   EA  +  ++ +  +TP+  TY +
Sbjct: 345 VNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTV 404

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
           L  A+ +A   +  +++L +ME+  + PN       + TFSS L G
Sbjct: 405 LVDAHCRAGNIDGAEQMLLQMEEKSVSPN-------VVTFSSILNG 443



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 158/376 (42%), Gaps = 55/376 (14%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +S ++  + K+G    A     +M++SG  P+   Y  LI        K +    AL  +
Sbjct: 437 FSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFF----KCQGQEAALDVY 492

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFK----------------------- 110
           + M   E  + N    + L+    +  N+++  ALFK                       
Sbjct: 493 RDML-HEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFK 551

Query: 111 ------------ELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
                       EL E  L+PD   YN  ++   + G   E +S L  M++   +PD  T
Sbjct: 552 TGNMPAALKVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQAT 611

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +N +I +  +     K  ++   +  S  KP L T+ ++++   +A +  KA+Y+  +M 
Sbjct: 612 YNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMA 671

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL----GKDMKVSTLNAMLEAYCMN 274
           +  +TP+ +TY  ++     C   SR+  +  E+ +L    G    ++  N ++   C +
Sbjct: 672 SAGFTPTPLTYRRVLQA---CSG-SRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCH 727

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           G+  +A ++ +     G+ PD+ T+  L   + K++  +       +M   G+ PN    
Sbjct: 728 GMTRKATIVLDEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPN---- 783

Query: 335 LEALETFSSSLAGSQS 350
              + TF++ L G +S
Sbjct: 784 ---IATFNTLLGGLES 796



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 123/252 (48%), Gaps = 11/252 (4%)

Query: 37  MRNSGCRPDPSVYNALI---TAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 93
           M  +G   D +VYN L+     H  TR     L + LG     +G+    P+ +T+N L+
Sbjct: 705 MMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEMLG-----RGI---APDTITFNALI 756

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
               ++ ++D   A + ++    L+P+I T+N ++      G I E ++V+  MK    +
Sbjct: 757 LGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVICEMKKMGLE 816

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P+ +T+++L+  Y K+    +  +++  ++     P   T+NS+I ++ KA +  +A+ +
Sbjct: 817 PNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLISDFAKAGMMNQAKEL 876

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F +M       +  TY+ ++  +    N +  R +  ++ +LG      T+++M  A+  
Sbjct: 877 FSEMKRRGVLHTSSTYDILLNGWSKLRNGTEVRILLKDMKELGFKPSKGTISSMSRAFSK 936

Query: 274 NGLPTEADLLFE 285
            G+  EA  L +
Sbjct: 937 PGMTWEARRLLK 948



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 147/344 (42%), Gaps = 11/344 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLHTRD 61
           +R  + D   Y+ L+  + K G    A+ +  E+      PD  VYN  I     L    
Sbjct: 532 ERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNVFINCLCRLGKFS 591

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           +AK+  K +    +  G+E   P+  TYN ++ A  +  N  +   L  E+  S + P++
Sbjct: 592 EAKSFLKEM----RNTGLE---PDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNL 644

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS-YGKRQAFDKMEQVFK 180
            TY  ++    + G++++ + +L+ M S    P  +T+  ++ +  G R  +  +E V +
Sbjct: 645 ITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVLQACSGSRSPYVILE-VHE 703

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +M +     +  +N+++       +  KA  V  +M      P  IT+  +I  +    
Sbjct: 704 LMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEMLGRGIAPDTITFNALILGHCKSS 763

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           ++  A   + ++   G    ++T N +L      G   EAD +      MG+ P++ TY 
Sbjct: 764 HLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTYD 823

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           +L   Y K + K    +L   M   G +P    +   +  F+ +
Sbjct: 824 ILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLISDFAKA 867



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/309 (19%), Positives = 132/309 (42%), Gaps = 6/309 (1%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ +   M   G   D   YN L+    ++ D   A   A    ++MK  +  +P++VT+
Sbjct: 208 ALAVVERMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVA----ERMKA-DGVEPSVVTH 262

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
             L+    + + +++   L++ +  S + PD+ T + ++D   ++G   E  ++   M  
Sbjct: 263 TTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDK 322

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
               P+ +T+   IDS  K Q  ++   +   ++       L  + +++   GK     +
Sbjct: 323 IGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEE 382

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A+ V +   +   TP+ +TY  ++  +    N+  A ++  ++ +      V T +++L 
Sbjct: 383 AKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILN 442

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
                G   +A        + G+ P+  TY  L   + K   +E    + + M   G+  
Sbjct: 443 GLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEA 502

Query: 330 NKRFFLEAL 338
           N  F +++L
Sbjct: 503 NN-FIVDSL 510


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 153/326 (46%), Gaps = 14/326 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  +I  + K+G+  LA+ L ++M       D  +YN +I        K K +  A
Sbjct: 214 DLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLC----KYKHMDDA 269

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F KM  KG+   KP++ TYN L+            + L  ++ E  + PD+  +N +
Sbjct: 270 FDLFNKMETKGI---KPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNAL 326

Query: 128 MDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +DA+ K G + E E +   M KS  C PD++ +N LI  + K +  ++  +VF+ +    
Sbjct: 327 IDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRG 386

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSR 244
                 T+ ++I  + +AR    A+ VF++M +    P  +TY   I + G C+  NV  
Sbjct: 387 LVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYN--ILLDGLCNNGNVET 444

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  +F+ + K    + + T   M+EA C  G   +   LF +    GV P+  TY  +  
Sbjct: 445 ALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMS 504

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
            + +  +KE    L   M+++G +PN
Sbjct: 505 GFCRKGLKEEADALFVEMKEDGPLPN 530



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 132/325 (40%), Gaps = 39/325 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+ +   G+   A  L S+M      PD   +NALI A +    K   L +A
Sbjct: 284 DVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFV----KEGKLVEA 339

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              + +M   + C P++V YN L++   + + V++   +F+E+ +  L  +  TY  ++ 
Sbjct: 340 EKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIH 399

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            + +       + V  +M S+   PDI+T+N+L+D        +    VF+ +     K 
Sbjct: 400 GFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKL 459

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ +MI    KA   GK E                                   ++F
Sbjct: 460 DIVTYTTMIEALCKA---GKVE--------------------------------DGWDLF 484

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             LS  G    V T   M+  +C  GL  EAD LF      G  P+S TY  L +A  + 
Sbjct: 485 CSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRD 544

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
             +    +L+K M   G   +   F
Sbjct: 545 GDEAASAELIKEMRSCGFAGDASTF 569



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 138/329 (41%), Gaps = 6/329 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +SKL++ + K  +  L + L  +M+N G   +   Y+  I         + ALA  LG  
Sbjct: 78  FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALA-ILGKM 136

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+       P+IVT N LL        + +  AL  ++ E    PD  T+  ++    +
Sbjct: 137 MKLG----YGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQ 192

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +    E  +++ RM    C+PD++T+  +I+   KR   D    +   +   K +  +  
Sbjct: 193 HNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVI 252

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N++I    K +    A  +F KM      P   TY  +I+        S A  +  ++ 
Sbjct: 253 YNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDML 312

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLF-ENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           +   +  +   NA+++A+   G   EA+ L+ E   +    PD   Y  L K + K    
Sbjct: 313 EKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRV 372

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           E   ++ + M Q G+V N   +   +  F
Sbjct: 373 EEGMEVFREMSQRGLVGNTVTYTTLIHGF 401



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 115/278 (41%), Gaps = 5/278 (1%)

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L  A+G F  M    R  P+IV ++ LL A A+    D V +L +++    ++ ++YTY+
Sbjct: 56  LDDAIGLFGDMVK-SRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 114

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
             ++ + +   +    ++L +M      P I+T N L++ +       +   +   ++  
Sbjct: 115 IFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 174

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVS 243
             +P   TF +++    +     +A  + ++M      P  +TY  +I   G C      
Sbjct: 175 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVIN--GLCKRGEPD 232

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  + +++ K   +  V   N +++  C      +A  LF      G+ PD  TY  L 
Sbjct: 233 LALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLI 292

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
                        +LL  M +  I P+  FF   ++ F
Sbjct: 293 SCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAF 330



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/251 (19%), Positives = 97/251 (38%), Gaps = 6/251 (2%)

Query: 80  ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
           + C+ N      L R   Q   +D    LF ++ +S   P I  ++ ++ A  K      
Sbjct: 40  DDCREN------LSRKVLQDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDL 93

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
           + S+  +M++     ++ T+++ I+ + +R        +   +M     P++ T NS++ 
Sbjct: 94  VISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLN 153

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
            +       +A  +  +M  M Y P  +T+  ++      +  S A  + + +   G   
Sbjct: 154 GFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQP 213

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            + T  A++   C  G P  A  L        +  D   Y  +     K    +    L 
Sbjct: 214 DLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLF 273

Query: 320 KRMEQNGIVPN 330
            +ME  GI P+
Sbjct: 274 NKMETKGIKPD 284


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 157/332 (47%), Gaps = 16/332 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L+  + K  +   A  LF EM   G  PD  ++  LI        +A  +  A   F
Sbjct: 118 YSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLC----QAGKVKDASERF 173

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M     C+PN+  YN+LL     +  ++Q N LF E+     +PD+ TYN ++DA  K
Sbjct: 174 KQMP-KHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCK 232

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              ++E   +   M++    P++ITF+ LI    +    +K  +VF S++ +  KP   T
Sbjct: 233 ARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYT 292

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDE 251
           + ++I    +A    +A  +F+KMT     P  + Y  +I   GYC   ++  A +++ E
Sbjct: 293 YTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIA--GYCKRGSMDEAEKLYRE 350

Query: 252 LS-KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           +S   G    + T N +++ +C  G    A+ L       G+  DS TY++L    ++A 
Sbjct: 351 MSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRAT 410

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
             +   ++ K+M +      K+F L+ +   S
Sbjct: 411 KLDEALEVYKQMRE------KKFLLDPVSCVS 436



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 153/347 (44%), Gaps = 41/347 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  ++ +LI  + + G+ + A   F +M   GC+P+  VYN L    LH    +  L +A
Sbjct: 149 DRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVL----LHGLCSSGQLEQA 204

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F +MK    C P++VTYN LL A  +AR V++   LF+ +  +   P++ T++ ++ 
Sbjct: 205 NTLFAEMKS-HSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIH 263

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              + G +++   V   M    CKP+  T+  LI    + +   +  ++F+ +  +   P
Sbjct: 264 GLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPP 323

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTA-MKYTPSFITYECIITMYGYCDNVSRAREI 248
               +NS+I  Y K     +AE ++++M+      P+ +T+  +I  +     + RA E+
Sbjct: 324 DAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANEL 383

Query: 249 FDELSKLGKDM-------------KVSTLNAMLEAY----------------------CM 273
             E+   G                + + L+  LE Y                      C 
Sbjct: 384 VAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCK 443

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
            G   +A  +FE +   G  P+  T+++L ++  K    E  QKL++
Sbjct: 444 TGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLME 490



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 152/337 (45%), Gaps = 41/337 (12%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A  ++  M  SG +PD   Y+ LI    H   K   L ++L    +M  M    P++  Y
Sbjct: 64  AREVYQHMVESGYKPDNVSYHILI----HGLAKIGKLDESLKILSEMV-MRGQTPSMQAY 118

Query: 90  NILLRACAQARNVDQVNALFKEL------------HESILA------------------- 118
           + L+RA A+AR VD  ++LF E+            +E IL                    
Sbjct: 119 SSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPK 178

Query: 119 ----PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
               P++  YN ++     +G +++  ++ + MKS+ C PD++T+N L+D+  K +  ++
Sbjct: 179 HGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEE 238

Query: 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
             ++F+++  +   P + TF+++I    +     KA  VF  M      P+  TY  +I+
Sbjct: 239 GCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIS 298

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF-ENSHNMGVT 293
                + V +ARE+F+++++          N+++  YC  G   EA+ L+ E S   G+ 
Sbjct: 299 GLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQ 358

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           P   T+  L   + K        +L+  M   G+  +
Sbjct: 359 PTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAAD 395



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 126/277 (45%), Gaps = 19/277 (6%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           N+ TY+ ++++  +    ++   + +E+  +   PD++ +NGVM  + ++  +++   V 
Sbjct: 9   NVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVY 68

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             M  +  KPD +++++LI    K    D+  ++   ++   + P++  ++S++    KA
Sbjct: 69  QHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKA 128

Query: 205 RLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKV 261
           R    A  +F +M    + P   + YE I+   G C    V  A E F ++ K G    V
Sbjct: 129 RRVDHASSLFDEMIRGGHHPDRLMFYELIL---GLCQAGKVKDASERFKQMPKHGCQPNV 185

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
              N +L   C +G   +A+ LF    +   +PD  TY  L  A  KA   E   KL + 
Sbjct: 186 PVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEA 245

Query: 322 MEQNGIVPNKRFF------------LE-ALETFSSSL 345
           M   G VPN   F            LE ALE F S L
Sbjct: 246 MRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSML 282



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 107/252 (42%), Gaps = 4/252 (1%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C P++  +N +++  A++ N+++   +++ + ES   PD  +Y+ ++    K G + E  
Sbjct: 41  CNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESL 100

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
            +LS M      P +  ++ L+ +  K +  D    +F  ++     P    F  +I+  
Sbjct: 101 KILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGL 160

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDM 259
            +A     A   F++M      P+   Y   + ++G C +  + +A  +F E+       
Sbjct: 161 CQAGKVKDASERFKQMPKHGCQPNVPVYN--VLLHGLCSSGQLEQANTLFAEMKSHSCSP 218

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            V T N +L+A C      E   LFE     G  P+  T+  L     +    E   ++ 
Sbjct: 219 DVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVF 278

Query: 320 KRMEQNGIVPNK 331
             M + G  PNK
Sbjct: 279 GSMLEAGCKPNK 290



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 35/228 (15%)

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           +A +++TY+ ++ +  K    +E   VL  M +  C PD+  FN ++  + +    +K  
Sbjct: 6   IAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAR 65

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           +V++ ++ S  KP   +++ +I    K     ++  +  +M     TPS   Y  ++   
Sbjct: 66  EVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRAL 125

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                V  A  +FDE+ + G                               H+    PD 
Sbjct: 126 AKARRVDHASSLFDEMIRGG-------------------------------HH----PDR 150

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             +  L     +A   +   +  K+M ++G  PN   +   L    SS
Sbjct: 151 LMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSS 198


>gi|357122825|ref|XP_003563115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Brachypodium distachyon]
          Length = 410

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 150/324 (46%), Gaps = 11/324 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTRDKAKALAK 68
           D    + L+    + G    A  +F  M   G  P+   + ALI  + +H R +     K
Sbjct: 37  DVAACTALVHGYCRSGDVAEAQRVFDVMPRLGLTPNEVTFTALIHGYFIHGRRE-----K 91

Query: 69  ALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            L  F+KM+  G+E   PN+ TYNIL+    +    ++   LF+E+    +  ++ +YN 
Sbjct: 92  GLALFEKMRIGGIE---PNLYTYNILVGEWCRTGEFERARLLFEEMPAKGITRNVVSYNT 148

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++    +   +K+   +L  M+    +P ++TFNLL+D YGK             +  + 
Sbjct: 149 LIAGLCRYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQMRMAG 208

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P+  T+N++I  + +AR   +A   F  M      P+ +TY  +I  +   +++ +A 
Sbjct: 209 YQPSAVTYNALIAGFCRARDMIRANRAFSDMKERGLAPTKVTYTILIDAFARENDMDKAF 268

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+F  + K G ++ V T   ++ A CM G   +A  LF++    G+   +  Y +L   Y
Sbjct: 269 EMFAGMEKAGLEVDVRTYGVLVHALCMEGNMKDARKLFQSIGEKGLQVGNVIYDMLIYGY 328

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            +        KL+  M + G VPN
Sbjct: 329 GREGSSYKAMKLIMEMRKKGFVPN 352



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/319 (21%), Positives = 125/319 (39%), Gaps = 46/319 (14%)

Query: 25  GQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERC 82
           G+    + LF +MR  G  P+   YN L+     T +      +A   F++M  KG+ R 
Sbjct: 87  GRREKGLALFEKMRIGGIEPNLYTYNILVGEWCRTGE----FERARLLFEEMPAKGITR- 141

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG------- 135
             N+V+YN L+    + R +     L + +    + P + T+N ++D YGK G       
Sbjct: 142 --NVVSYNTLIAGLCRYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALH 199

Query: 136 -----------------------------MIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
                                        MI+      S MK     P  +T+ +LID++
Sbjct: 200 FSNQMRMAGYQPSAVTYNALIAGFCRARDMIRA-NRAFSDMKERGLAPTKVTYTILIDAF 258

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
            +    DK  ++F  +  +  +  + T+  ++           A  +FQ +         
Sbjct: 259 ARENDMDKAFEMFAGMEKAGLEVDVRTYGVLVHALCMEGNMKDARKLFQSIGEKGLQVGN 318

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           + Y+ +I  YG   +  +A ++  E+ K G     ++    +   C +G  +EA+ L ++
Sbjct: 319 VIYDMLIYGYGREGSSYKAMKLIMEMRKKGFVPNSASYGLTIRILCNDGKCSEAEALIDD 378

Query: 287 SHNMGVTPDSSTYKLLYKA 305
               GV    S  ++L  A
Sbjct: 379 MVRAGVQTSESVRQVLLNA 397



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 72/177 (40%), Gaps = 1/177 (0%)

Query: 135 GMIKEMESVLSR-MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           G ++   ++L+R  K+     D+     L+  Y +     + ++VF  +      P   T
Sbjct: 16  GEVRSALALLARGAKAGDTTLDVAACTALVHGYCRSGDVAEAQRVFDVMPRLGLTPNEVT 75

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           F ++I  Y     + K   +F+KM      P+  TY  ++  +       RAR +F+E+ 
Sbjct: 76  FTALIHGYFIHGRREKGLALFEKMRIGGIEPNLYTYNILVGEWCRTGEFERARLLFEEMP 135

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
             G    V + N ++   C      +A  L E     G+ P   T+ LL   Y KA 
Sbjct: 136 AKGITRNVVSYNTLIAGLCRYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAG 192


>gi|224090111|ref|XP_002308939.1| predicted protein [Populus trichocarpa]
 gi|222854915|gb|EEE92462.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 149/332 (44%), Gaps = 7/332 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+ QR Y A T IY+ +I +  +   T  A  LF EM+   C+PD    NALI AH  + 
Sbjct: 125 MKNQRNYCARTDIYNMMIRLHARHNWTDQARGLFFEMQKWRCKPDAETCNALINAHGRSG 184

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
               A+       QK        P+  TYN L+ AC  + N  +   L K++ E+ + PD
Sbjct: 185 QWRWAMNIMEDMLQKA-----IPPSRSTYNNLINACGSSGNWREALKLCKKMTENGVGPD 239

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + T+N ++ AY       +  S    MK    +PD  T N++I    K   ++K   +FK
Sbjct: 240 LVTHNIILSAYKTGAQYAKALSYFELMKGTNIRPDTTTLNIIIYCLTKLGQYEKAIGIFK 299

Query: 181 SLMHSKEK--PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           S+   + +  P + TF S+I  Y           VF  M A    P+ ++Y  ++  Y  
Sbjct: 300 SMREKRAECHPDVVTFTSIIHLYSVNGQIENCRAVFSTMVAEGLKPNIVSYNTLMGAYAS 359

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
                 A  +F+ +   G    V +  ++L +Y  +  P +A  +FE      + P+  +
Sbjct: 360 HGMNKEALSVFNAIKNSGLRPDVVSYTSLLNSYGRSQQPKKAREVFEMMKRDKLKPNIVS 419

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y  +  AY    +     ++L+ MEQ+GI PN
Sbjct: 420 YNAMIDAYGSNGLLAEAVEVLREMEQDGIYPN 451



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 152/323 (47%), Gaps = 7/323 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI   G  G  R A+ L  +M  +G  PD   +N +++A+          AKAL YF
Sbjct: 208 YNNLINACGSSGNWREALKLCKKMTENGVGPDLVTHNIILSAY----KTGAQYAKALSYF 263

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE--SILAPDIYTYNGVMDAY 131
           + MKG    +P+  T NI++    +    ++   +FK + E  +   PD+ T+  ++  Y
Sbjct: 264 ELMKGTN-IRPDTTTLNIIIYCLTKLGQYEKAIGIFKSMREKRAECHPDVVTFTSIIHLY 322

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
             NG I+   +V S M +   KP+I+++N L+ +Y       +   VF ++ +S  +P +
Sbjct: 323 SVNGQIENCRAVFSTMVAEGLKPNIVSYNTLMGAYASHGMNKEALSVFNAIKNSGLRPDV 382

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            ++ S++ +YG+++   KA  VF+ M   K  P+ ++Y  +I  YG    ++ A E+  E
Sbjct: 383 VSYTSLLNSYGRSQQPKKAREVFEMMKRDKLKPNIVSYNAMIDAYGSNGLLAEAVEVLRE 442

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G      ++  +L A          D++ + +    +  ++  Y     +Y     
Sbjct: 443 MEQDGIYPNAVSICTLLAACGRCSRKVNIDVVLQAAERRHIKLNTIAYNSAIGSYMNVGE 502

Query: 312 KELVQKLLKRMEQNGIVPNKRFF 334
            E    + + M ++ ++P+   F
Sbjct: 503 FEKATSMYRSMRKSKVIPDAVTF 525



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 151/326 (46%), Gaps = 23/326 (7%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL-HTRDKAKALAK 68
           D   ++ +I +    GQ      +FS M   G +P+   YN L+ A+  H  +K     +
Sbjct: 311 DVVTFTSIIHLYSVNGQIENCRAVFSTMVAEGLKPNIVSYNTLMGAYASHGMNK-----E 365

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL  F  +K     +P++V+Y  LL +  +++   +   +F+ +    L P+I +YN ++
Sbjct: 366 ALSVFNAIKN-SGLRPDVVSYTSLLNSYGRSQQPKKAREVFEMMKRDKLKPNIVSYNAMI 424

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           DAYG NG++ E   VL  M+ +   P+ ++   L+ + G+      ++ V ++      K
Sbjct: 425 DAYGSNGLLAEAVEVLREMEQDGIYPNAVSICTLLAACGRCSRKVNIDVVLQAAERRHIK 484

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT----MYGYCDNVSR 244
                +NS I +Y       KA  +++ M   K  P  +T+  +I+    M  YC+    
Sbjct: 485 LNTIAYNSAIGSYMNVGEFEKATSMYRSMRKSKVIPDAVTFTVLISGCCKMTKYCE---- 540

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A E   E+     D+K+       EAY  +G  TEA+ +F      G +PD  TY ++  
Sbjct: 541 ALEFLSEM----MDLKIPMTK---EAYS-SGKITEAESMFNKMKMAGCSPDVVTYTMMLH 592

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
           AY  A   +    LL+ ME+  I P+
Sbjct: 593 AYNAAEHWKKACALLQEMEEYNIQPD 618



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 123/295 (41%), Gaps = 37/295 (12%)

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F+ MK           YN+++R  A+    DQ   LF E+ +    PD  T N +++A+G
Sbjct: 122 FRWMKNQRNYCARTDIYNMMIRLHARHNWTDQARGLFFEMQKWRCKPDAETCNALINAHG 181

Query: 133 KNGMIKE----MESVLS-------------------------------RMKSNQCKPDII 157
           ++G  +     ME +L                                +M  N   PD++
Sbjct: 182 RSGQWRWAMNIMEDMLQKAIPPSRSTYNNLINACGSSGNWREALKLCKKMTENGVGPDLV 241

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           T N+++ +Y     + K    F+ +  +  +P   T N +I    K     KA  +F+ M
Sbjct: 242 THNIILSAYKTGAQYAKALSYFELMKGTNIRPDTTTLNIIIYCLTKLGQYEKAIGIFKSM 301

Query: 218 TAMKYT--PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
              +    P  +T+  II +Y     +   R +F  +   G    + + N ++ AY  +G
Sbjct: 302 REKRAECHPDVVTFTSIIHLYSVNGQIENCRAVFSTMVAEGLKPNIVSYNTLMGAYASHG 361

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +  EA  +F    N G+ PD  +Y  L  +Y ++   +  +++ + M+++ + PN
Sbjct: 362 MNKEALSVFNAIKNSGLRPDVVSYTSLLNSYGRSQQPKKAREVFEMMKRDKLKPN 416



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 24/149 (16%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL--- 66
           +T  Y+  I      G+   A  ++  MR S   PD   +  LI+         +AL   
Sbjct: 486 NTIAYNSAIGSYMNVGEFEKATSMYRSMRKSKVIPDAVTFTVLISGCCKMTKYCEALEFL 545

Query: 67  --------------------AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVN 106
                                +A   F KMK M  C P++VTY ++L A   A +  +  
Sbjct: 546 SEMMDLKIPMTKEAYSSGKITEAESMFNKMK-MAGCSPDVVTYTMMLHAYNAAEHWKKAC 604

Query: 107 ALFKELHESILAPDIYTYNGVMDAYGKNG 135
           AL +E+ E  + PD    + +M A+ K G
Sbjct: 605 ALLQEMEEYNIQPDTIACSALMRAFNKGG 633


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 160/340 (47%), Gaps = 26/340 (7%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    K G    A  L +EM+  G  PD   +++++ A  +T +    L++A+ YF
Sbjct: 108 YNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGN----LSRAMQYF 163

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++      C P+ V +NIL+    +A  + +   + +E+ E  + PD+ TYN ++D   K
Sbjct: 164 RESV---ECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCK 220

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +  ++E   +L  M   + +P+++T+N LI  Y K        Q+ + ++ S   P + T
Sbjct: 221 SYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVT 280

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDE 251
           FNS+I  + +     KA  V   M      P+ +TY  +I+  G CD    + A E+  E
Sbjct: 281 FNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLIS--GLCDAGRANEACELLSE 338

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEA----DLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +   G    + T N+++  +C N    +A    +L+ E     GV PD  +Y  L  A  
Sbjct: 339 MDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVER----GVIPDGISYCTLAVALL 394

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
           K+   +    LL  M   G +PN       L TF+S + G
Sbjct: 395 KSERFDEAFALLDNMFDAGAIPN-------LFTFNSLMEG 427



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 150/363 (41%), Gaps = 44/363 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+R +  D   +S ++  +   G    AM  F E  +  C PD  ++N L+    H   K
Sbjct: 132 KERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRE--SVECAPDSVLFNILV----HGLCK 185

Query: 63  AKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           A  L++A    ++M   ER   P++VTYN L+    ++  +++   L + + +  + P++
Sbjct: 186 ANQLSEARQMIEEMS--ERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNL 243

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TYN ++  Y K G       ++ RM  +   PD++TFN LI  + ++   DK  +V   
Sbjct: 244 VTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHL 303

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY----- 236
           +      P L T+N +I     A    +A  +  +M      P  ITY  +I ++     
Sbjct: 304 MKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQ 363

Query: 237 ---------------------GYC---------DNVSRAREIFDELSKLGKDMKVSTLNA 266
                                 YC         +    A  + D +   G    + T N+
Sbjct: 364 IEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNS 423

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           ++E  C +    EA  L      +G  P +STY++L     KA   +  +++L  M   G
Sbjct: 424 LMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEG 483

Query: 327 IVP 329
           I P
Sbjct: 484 IQP 486



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 123/279 (44%), Gaps = 12/279 (4%)

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
           L T  KA+   +A   F+     + C  N +TYN L+    +A ++++   L  E+ E  
Sbjct: 76  LRTLVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERG 135

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
            +PD+ T++ ++ A    G +          +S +C PD + FN+L+    K     +  
Sbjct: 136 HSPDVVTHSSIVQALCNTGNLSRAMQYFR--ESVECAPDSVLFNILVHGLCKANQLSEAR 193

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           Q+ + +      P + T+NS+I    K+    +A  + + M   K  P+ +TY  +I  Y
Sbjct: 194 QMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLI--Y 251

Query: 237 GYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG--- 291
           GYC       A ++ + + + G    V T N+++  +C     ++ D   E  H M    
Sbjct: 252 GYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQK---SKIDKACEVLHLMKKGL 308

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             P+  TY +L      A       +LL  M+  GI+P+
Sbjct: 309 CAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPD 347



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 88/206 (42%), Gaps = 5/206 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI+ +   G+   A  L SEM   G  PD   YN+LI          +A        
Sbjct: 316 YNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQ-----I 370

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           Q +       P+ ++Y  L  A  ++   D+  AL   + ++   P+++T+N +M+    
Sbjct: 371 QNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCC 430

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +  + E   +L+ M+   C P   T+ +L+    K    D  ++V   ++    +P + +
Sbjct: 431 SRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSS 490

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTA 219
             +++    +   Q  A + F ++ A
Sbjct: 491 SGTIVHTLAREGKQDLALHYFDQVVA 516



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 6/206 (2%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R  + D   Y+ LI +  +  Q   A  + + M   G  PD   Y  L  A L +    +
Sbjct: 342 RGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDE 401

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           A A     F          PN+ T+N L+     +R +D+   L   +      P   TY
Sbjct: 402 AFALLDNMFDAGA-----IPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTY 456

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
             ++    K G + + + VL  M S   +P + +   ++ +  +    D     F  ++ 
Sbjct: 457 EVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDLALHYFDQVVA 516

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKA 210
           ++ K   P++  + + + K   +GK+
Sbjct: 517 AESKACDPSYQKL-LEFVKVLREGKS 541


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 150/326 (46%), Gaps = 10/326 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++  I D   YS +I  + K G+T+ AM +F +   +G  PD  +YN+LI+      D  
Sbjct: 619 EKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGD-- 676

Query: 64  KALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             + KA   + +M   G+    PNIV YN L+    +   V +   LF E+ E  L PD+
Sbjct: 677 --IEKASQLYDEMLHNGI---NPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDV 731

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TY+ ++D Y K+G + E   +   M S    PD   + +LID  GK    +K   +F  
Sbjct: 732 VTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHE 791

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
               K   +L  FNS+I ++ K     +A  +F  M   K TP+ +TY  +I  YG  + 
Sbjct: 792 -AQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEM 850

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +  A ++F ++          T  ++L +Y   G   +   LF++    G+  D+  Y +
Sbjct: 851 MEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGV 910

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGI 327
           +  AY K        KLL +    GI
Sbjct: 911 MASAYCKEGKSLEALKLLNKSLVEGI 936



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 154/357 (43%), Gaps = 39/357 (10%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ LI  + +  +   A  L  +M   G +P+   Y A I  +     K+  + 
Sbjct: 518 LPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLY----SKSGEIQ 573

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            A  YF+ M       PN V Y IL++      N  +  + FK + E  L PDI  Y+ +
Sbjct: 574 VAERYFKDMLS-SGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAI 632

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           + +  KNG  KE   V  +       PD+  +N LI  + K    +K  Q++  ++H+  
Sbjct: 633 IHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGI 692

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P +  +N++I    K     KA  +F ++      P  +TY  II  Y    N++ A +
Sbjct: 693 NPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFK 752

Query: 248 IFDE----------------LSKLGKDMKV------------------STLNAMLEAYCM 273
           +FDE                +   GK+  +                  S  N++++++C 
Sbjct: 753 LFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCK 812

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +G   EA  LF++  +  +TP+  TY +L  AY KA M E  ++L   ME   I+PN
Sbjct: 813 HGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPN 869



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 143/319 (44%), Gaps = 9/319 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + K G+   AM LF+EM  +G  PD   YN LI  +L + D    +AKA    
Sbjct: 384 YNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHD----MAKACELL 439

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +MK   +  P+  TY++L+     + ++ + N +  ++  + + P+++ Y  ++ AY +
Sbjct: 440 AEMKA-RKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQ 498

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
               +    +L  M +N   PD+  +N LI    + +  ++ + +   +     KP   T
Sbjct: 499 ESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHT 558

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDE 251
           + + I  Y K+     AE  F+ M +    P+ + Y  +I   G+CD  N   A   F  
Sbjct: 559 YGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIK--GHCDVGNTVEALSTFKC 616

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G    +   +A++ +   NG   EA  +F      GV PD   Y  L   + K   
Sbjct: 617 MLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGD 676

Query: 312 KELVQKLLKRMEQNGIVPN 330
            E   +L   M  NGI PN
Sbjct: 677 IEKASQLYDEMLHNGINPN 695



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 133/300 (44%), Gaps = 7/300 (2%)

Query: 32  W-LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90
           W ++  M  +   PD   Y  +I AH    D  K     L   +K      CKPN+ TYN
Sbjct: 227 WKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKG-KMVLSEMEK-----ECKPNLFTYN 280

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
             +    Q   VD+   + K + E  L PD +TY  ++D + K    KE + +   M S+
Sbjct: 281 AFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSS 340

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
              P+  T+  LID + K    ++  ++   ++    K  + T+N+MI    KA    KA
Sbjct: 341 GLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKA 400

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
             +F +M      P   TY  +I  Y    ++++A E+  E+          T + ++  
Sbjct: 401 MSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISG 460

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            C +    +A+ + +     GV P+   Y  L KAY + +  E+  +LLK M  NG++P+
Sbjct: 461 LCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPD 520



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 151/335 (45%), Gaps = 9/335 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+    K+ +++ A  +F  M +SG  P+   Y ALI   +    K   + +A
Sbjct: 310 DGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFI----KEGNIEEA 365

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           L    +M  +G+   K N+VTYN ++   A+A  + +  +LF E+  + L PD +TYN +
Sbjct: 366 LRIKDEMITRGL---KLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLL 422

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D Y K+  + +   +L+ MK+ +  P   T+++LI          K  +V   ++ +  
Sbjct: 423 IDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGV 482

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           KP +  + ++I  Y +      A  + + M A    P    Y C+I        V  A+ 
Sbjct: 483 KPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKM 542

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +  ++ + G      T  A +  Y  +G    A+  F++  + G+ P++  Y +L K + 
Sbjct: 543 LLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHC 602

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
                       K M + G++P+ R +   + + S
Sbjct: 603 DVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLS 637



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 119/247 (48%), Gaps = 1/247 (0%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P ++  N L+R   +A  +     ++  + E+ + PD+YTY  V+ A+ K G + + + V
Sbjct: 205 PTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMV 264

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           LS M+  +CKP++ T+N  I    +  A D+  +V K +M     P   T+  ++  + K
Sbjct: 265 LSEME-KECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCK 323

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
            +   +A+ +F+ M +    P+  TY  +I  +    N+  A  I DE+   G  + V T
Sbjct: 324 QKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVT 383

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            NAM+      G   +A  LF      G+ PD+ TY LL   Y K++      +LL  M+
Sbjct: 384 YNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMK 443

Query: 324 QNGIVPN 330
              + P+
Sbjct: 444 ARKLTPS 450



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 1/187 (0%)

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           ++  F++ ID +      ++   VF + +     PTL   N+++ +  KA + G    V+
Sbjct: 171 NLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVY 230

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
             M   K  P   TY  +I  +    +V + + +  E+ K  K   + T NA +   C  
Sbjct: 231 GSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKP-NLFTYNAFIGGLCQT 289

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           G   EA  + +     G+ PD  TY LL   + K    +  + + + M  +G+ PN+  +
Sbjct: 290 GAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTY 349

Query: 335 LEALETF 341
              ++ F
Sbjct: 350 TALIDGF 356



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 5/224 (2%)

Query: 2    QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
            + Q+  +     ++ LI    K G+   A  LF +M +    P+   Y  LI A+     
Sbjct: 791  EAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAY----G 846

Query: 62   KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            KA+ + +A   F  M+      PN +TY  LL +  Q  N  ++ +LFK++    +A D 
Sbjct: 847  KAEMMEEAEQLFLDME-TRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDA 905

Query: 122  YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
              Y  +  AY K G   E   +L++      K +   F+ LI    K +    + ++   
Sbjct: 906  IAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSE 965

Query: 182  LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
            +   +   +  T N++++ + K+  + +A  V   M  + + P+
Sbjct: 966  MGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVPT 1009


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 145/321 (45%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   +S LI  +  + +   AM  F EM  SG +P+   YN +I        K      A
Sbjct: 153 DAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFC----KIGKTTVA 208

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +G  +KM      +P+IV YN ++    + R V +   +F E+    + PD++TY+ +M 
Sbjct: 209 VGLLKKMDKAGG-RPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMH 267

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
               +   +E  ++ + M S    PD++TFN+L+D   K     + + + K ++    +P
Sbjct: 268 GLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEP 327

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T+NS++  Y       +A  VF  M      P+ ++Y  +I  Y     +  ARE+F
Sbjct: 328 NYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELF 387

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE+S  G        N ++   C  G   EA  LF++    G +PD  T  +L  +  K 
Sbjct: 388 DEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKL 447

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +   +L + M+ + + PN
Sbjct: 448 GYLDNALRLFRAMQDSCLKPN 468



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 147/296 (49%), Gaps = 5/296 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I    K G+T +A+ L  +M  +G RPD  +YN +I        K + +++AL  F
Sbjct: 192 YNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLC----KDRLVSEALDIF 247

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++KG +  +P++ TY+IL+     +   ++ +ALF E+    + PD+ T+N ++D   K
Sbjct: 248 SEIKG-KGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCK 306

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            GM+ E + ++  M     +P+  T+N L++ Y  +    +   VF +++     P + +
Sbjct: 307 EGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVS 366

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N +I  Y KA+   +A  +F +M+     P+   Y  +I+          ARE+F ++ 
Sbjct: 367 YNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQ 426

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             G    + T   +L++ C  G    A  LF    +  + P+  TY +L +A  K+
Sbjct: 427 AQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAMYKS 482



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 114/248 (45%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P+ VT++ L+          +    F E+  S   P+++TYN ++  + K G       
Sbjct: 151 EPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVG 210

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +L +M     +PDI+ +N +ID   K +   +   +F  +     +P + T++ ++    
Sbjct: 211 LLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLC 270

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
            +  + +A  +F +M ++   P  +T+  ++        +S A+ I   + + G +   +
Sbjct: 271 NSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYA 330

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T N+++  YC+     EA ++F+     G  P+  +Y +L   Y KA   +  ++L   M
Sbjct: 331 TYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEM 390

Query: 323 EQNGIVPN 330
              G++PN
Sbjct: 391 SFRGLIPN 398



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 115/249 (46%), Gaps = 4/249 (1%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P IV ++ LL A  + ++   V +L K +    +  D++ +N +++ + +   +    SV
Sbjct: 82  PCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDVFHFNILINCFSRLQRVDFAFSV 141

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L ++     +PD +TF+ LI+       F +  + F  ++ S  +P L T+N++I  + K
Sbjct: 142 LGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCK 201

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKV 261
                 A  + +KM      P  + Y  II   G C +  VS A +IF E+   G    V
Sbjct: 202 IGKTTVAVGLLKKMDKAGGRPDIVIYNTIID--GLCKDRLVSEALDIFSEIKGKGVRPDV 259

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T + ++   C +    EA  LF    ++ + PD  T+ +L     K  M    Q ++K 
Sbjct: 260 FTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKI 319

Query: 322 MEQNGIVPN 330
           M + G+ PN
Sbjct: 320 MIEKGVEPN 328



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/303 (20%), Positives = 129/303 (42%), Gaps = 9/303 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A++ F+ M +    P    ++ L++A +  +     L+       K   + R + ++  +
Sbjct: 68  ALFSFNHMIHKHPLPCIVEFDKLLSALVRIKHYGTVLS-----LSKRIELLRIERDVFHF 122

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           NIL+   ++ + VD   ++  ++ +    PD  T++ +++                 M +
Sbjct: 123 NILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVA 182

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
           +  +P++ T+N +I  + K         + K +  +  +P +  +N++I    K RL  +
Sbjct: 183 SGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSE 242

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAM 267
           A  +F ++      P   TY   I M+G C  D    A  +F+E+  L     V T N +
Sbjct: 243 ALDIFSEIKGKGVRPDVFTYS--ILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNIL 300

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           ++  C  G+ +EA  + +     GV P+ +TY  L   Y   N     + +   M   G 
Sbjct: 301 VDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGC 360

Query: 328 VPN 330
           +PN
Sbjct: 361 MPN 363



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 104/240 (43%), Gaps = 7/240 (2%)

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS---RMKSN 150
           + C+     D + +    +H+  L P I  ++ ++ A  +   IK   +VLS   R++  
Sbjct: 58  KGCSLTNIEDALFSFNHMIHKHPL-PCIVEFDKLLSALVR---IKHYGTVLSLSKRIELL 113

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
           + + D+  FN+LI+ + + Q  D    V   ++    +P   TF+S+I          +A
Sbjct: 114 RIERDVFHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARA 173

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
              F +M A  Y P+  TY  II  +      + A  +  ++ K G    +   N +++ 
Sbjct: 174 MEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDG 233

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            C + L +EA  +F      GV PD  TY +L      ++ KE    L   M    I+P+
Sbjct: 234 LCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPD 293



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 5/124 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    K  +   A  LF EM   G  P+   YN LI+       +A    +A   F
Sbjct: 367 YNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLC----QAGRHCEARELF 422

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M+  + C P++VT  ILL +  +   +D    LF+ + +S L P++ TY+ ++ A  K
Sbjct: 423 KDMQA-QGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAMYK 481

Query: 134 NGMI 137
           +G I
Sbjct: 482 SGKI 485



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 7/92 (7%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R  I +T  Y+ LI+ + + G+   A  LF +M+  GC PD      L    L +  K  
Sbjct: 393 RGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTIL----LDSLCKLG 448

Query: 65  ALAKALGYFQKMKGMERC-KPNIVTYNILLRA 95
            L  AL  F+ M+  + C KPN+VTY+IL+RA
Sbjct: 449 YLDNALRLFRAMQ--DSCLKPNLVTYDILIRA 478



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/177 (18%), Positives = 68/177 (38%), Gaps = 13/177 (7%)

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           F  ++H    P +  F+ ++    + +  G    + +++  ++       +  +I  +  
Sbjct: 72  FNHMIHKHPLPCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDVFHFNILINCFSR 131

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              V  A  +  ++ KLG +    T ++++   C       A   F+     G  P+  T
Sbjct: 132 LQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHT 191

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN-------------KRFFLEALETFS 342
           Y  + K + K     +   LLK+M++ G  P+              R   EAL+ FS
Sbjct: 192 YNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFS 248


>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Brachypodium distachyon]
          Length = 800

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 151/316 (47%), Gaps = 5/316 (1%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S +IA  G+ G    A+  F ++++ G  P    YNAL    L    KA    +AL   +
Sbjct: 262 STVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNAL----LQVFGKAGNYMEALRVLK 317

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M+    CKP+ VTYN L  + A+A   ++       +    + P+ +TYN +M AYG  
Sbjct: 318 EME-ESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNA 376

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G + E  ++   MK N   P + T+NL++   GK+  F+ M ++   +  S   P   T+
Sbjct: 377 GKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTW 436

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N+M+   GK  ++G    V ++M +        T+  +I+ YG C + + A +++DE++ 
Sbjct: 437 NTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTA 496

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
            G    ++T NA+L      G  T A  +     N G  P+  +Y LL + + K      
Sbjct: 497 AGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDMSYSLLLQCHAKGGNAAG 556

Query: 315 VQKLLKRMEQNGIVPN 330
           ++ + K + +  + P+
Sbjct: 557 IEAIEKEVYEGTVFPS 572



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 143/322 (44%), Gaps = 8/322 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++  +  +G+   A+ LF+E++  G  P   +YN ++  +       ++  + 
Sbjct: 186 DVRAYTTVLHALSHEGRYERALELFAELKREGVAPTHVMYNVMLDVYGRM---GRSWPQI 242

Query: 70  LGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +   ++M+  G+E   P+  T + ++ AC +   VD+  A F++L      P + TYN +
Sbjct: 243 VAMLEEMRAAGVE---PDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNAL 299

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  +GK G   E   VL  M+ + CKPD +T+N L  SY +   +++  +   +++    
Sbjct: 300 LQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGI 359

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P   T+N+++  YG A    +A  +F  M    + P   TY  I+ M G     +   E
Sbjct: 360 LPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLE 419

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +  E+S+ G      T N ML      G+      + E   + GV     T+  L  AY 
Sbjct: 420 MLGEMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLISAYG 479

Query: 308 KANMKELVQKLLKRMEQNGIVP 329
           +   +    K+   M   G  P
Sbjct: 480 RCGSRANAFKMYDEMTAAGFTP 501



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 159/330 (48%), Gaps = 11/330 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +I     Y+ ++ ++GKK +  + + +  EM  SGC P+   +N ++ A    R  
Sbjct: 390 KKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTML-AVCGKRGM 448

Query: 63  AKALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
              + + L   ++MK  G+E C+    T+N L+ A  +  +      ++ E+  +   P 
Sbjct: 449 EGYVTRVL---ERMKSCGVELCRD---TFNTLISAYGRCGSRANAFKMYDEMTAAGFTPC 502

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TYN ++    + G     +S++++MK+   KP+ ++++LL+  + K      +E + K
Sbjct: 503 LTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEK 562

Query: 181 SLMHSKEKPTLPTFNSMII-NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
            +      P+     +++I N+   RL+G  E  FQ++ A  + P  + +  +++MY   
Sbjct: 563 EVYEGTVFPSWVILRTLVISNFKCRRLEG-IERAFQEVMARGHKPDLVIFNSMLSMYAKN 621

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
               +A E+FD + + G    + T N+M++ Y  +    EA+ + +      + PD  +Y
Sbjct: 622 GMYRKAGEMFDSIKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQLKPDVVSY 681

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             +   + K  + +  Q++L  M  +G+ P
Sbjct: 682 NTVMNGFCKQGLIKEAQRILSEMIADGVRP 711



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 152/346 (43%), Gaps = 17/346 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT--- 59
           K R ++     Y+ L+ V GK G    A+ +  EM  SGC+PD   YN L  ++      
Sbjct: 285 KSRGHVPCVVTYNALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFY 344

Query: 60  RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
            + AK L   +      KG+    PN  TYN ++ A   A  VD+  ALF  + ++   P
Sbjct: 345 EEAAKCLDTMVS-----KGI---LPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFIP 396

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
            + TYN ++   GK      M  +L  M  + C P+ +T+N ++   GKR     + +V 
Sbjct: 397 YVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVL 456

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           + +     +    TFN++I  YG+   +  A  ++ +MTA  +TP   TY  ++++    
Sbjct: 457 ERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQ 516

Query: 240 DNVSRAREIFDELSKLG---KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
            + + A+ I +++   G    DM  S L   L+ +   G     + + +  +   V P  
Sbjct: 517 GDWTAAQSIINKMKNEGFKPNDMSYSLL---LQCHAKGGNAAGIEAIEKEVYEGTVFPSW 573

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
              + L  +  K    E +++  + +   G  P+   F   L  ++
Sbjct: 574 VILRTLVISNFKCRRLEGIERAFQEVMARGHKPDLVIFNSMLSMYA 619



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 142/290 (48%), Gaps = 33/290 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA--KALAK--- 68
           Y+ L++V+ ++G    A  + ++M+N G +P+   Y+ L+  H    + A  +A+ K   
Sbjct: 506 YNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVY 565

Query: 69  --------------ALGYF--QKMKGMERC---------KPNIVTYNILLRACAQARNVD 103
                          +  F  ++++G+ER          KP++V +N +L   A+     
Sbjct: 566 EGTVFPSWVILRTLVISNFKCRRLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYR 625

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +   +F  + +  L+PD+ TYN +MD Y K+    E E +L R+K++Q KPD++++N ++
Sbjct: 626 KAGEMFDSIKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQLKPDVVSYNTVM 685

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           + + K+    + +++   ++    +P + T+++++  Y    +  +A  V   M     +
Sbjct: 686 NGFCKQGLIKEAQRILSEMIADGVRPCVVTYHTLVGGYASREMFSEAREVVSYMIQRNLS 745

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGK--DMK-VSTLNAMLEA 270
           P  +TY  ++  Y        AR    E+++  +  D K +STL A +E+
Sbjct: 746 PMELTYRRVVDSYCKAKRFDEARGFLYEIAETDRNSDQKLLSTLTARVES 795



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 139/298 (46%), Gaps = 9/298 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI+  G+ G    A  ++ EM  +G  P  + YNAL++      D   A +      
Sbjct: 471 FNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQS----II 526

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KMK  E  KPN ++Y++LL+  A+  N   + A+ KE++E  + P       ++ +  K
Sbjct: 527 NKMKN-EGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYEGTVFPSWVILRTLVISNFK 585

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              ++ +E     + +   KPD++ FN ++  Y K   + K  ++F S+      P L T
Sbjct: 586 CRRLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLIT 645

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDE 251
           +NSM+  Y K+    +AE + +++   +  P  ++Y  +  M G+C    +  A+ I  E
Sbjct: 646 YNSMMDMYAKSNESWEAEKILKRLKTSQLKPDVVSYNTV--MNGFCKQGLIKEAQRILSE 703

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +   G    V T + ++  Y    + +EA  +        ++P   TY+ +  +Y KA
Sbjct: 704 MIADGVRPCVVTYHTLVGGYASREMFSEAREVVSYMIQRNLSPMELTYRRVVDSYCKA 761



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 1/248 (0%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-IKEMESV 143
           ++  Y  +L A +     ++   LF EL    +AP    YN ++D YG+ G    ++ ++
Sbjct: 186 DVRAYTTVLHALSHEGRYERALELFAELKREGVAPTHVMYNVMLDVYGRMGRSWPQIVAM 245

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L  M++   +PD  T + +I + G+    D+    F+ L      P + T+N+++  +GK
Sbjct: 246 LEEMRAAGVEPDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNALLQVFGK 305

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A    +A  V ++M      P  +TY  +   Y        A +  D +   G      T
Sbjct: 306 AGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPNAFT 365

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N ++ AY   G   EA  LF+     G  P  +TY L+     K +   ++ ++L  M 
Sbjct: 366 YNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMS 425

Query: 324 QNGIVPNK 331
           ++G  PN+
Sbjct: 426 RSGCTPNR 433


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 150/314 (47%), Gaps = 4/314 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++  I  + K G+   A  +  +++  G  P+   YN LI  H   +  A  + +A    
Sbjct: 203 FNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCK-KGSAGKMYRADAIL 261

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M   + C PN +T+N L+    +  NV      F+E+    L P+I TYN +++    
Sbjct: 262 KEMLANKIC-PNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSN 320

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           NG + E  ++  +M     KP+I+TFN LI+ + K++   +  ++F  +      P   T
Sbjct: 321 NGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAIT 380

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           FN+MI  + KA +  +   +   M      P+  TY C+I       NV  A+++ +E+ 
Sbjct: 381 FNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEME 440

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT-KANMK 312
                  V T N ++  +C +G P++A+ L     N+GV P+  TY  L   Y  + N+K
Sbjct: 441 NYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLK 500

Query: 313 ELVQKLLKRMEQNG 326
             + K+  +ME+ G
Sbjct: 501 AAL-KVRTQMEKEG 513



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 138/271 (50%), Gaps = 9/271 (3%)

Query: 34  FSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 93
           F EM+  G +P+   YN+LI   L    K   L +A+  + KM G+   KPNIVT+N L+
Sbjct: 296 FEEMQRQGLKPNIVTYNSLING-LSNNGK---LDEAIALWDKMVGL-GLKPNIVTFNALI 350

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
               + + + +   LF ++ E  L P+  T+N ++DA+ K GM++E  ++ + M      
Sbjct: 351 NGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIF 410

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P++ T+N LI    + Q     +++   + + + K  + T+N +I  + K     KAE +
Sbjct: 411 PNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKL 470

Query: 214 FQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
             +M  +   P+ +TY  +  M GYC   N+  A ++  ++ K GK   V T N +++ +
Sbjct: 471 LGEMLNVGVKPNHVTYNTL--MDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGF 528

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           C  G   +A+ L       G+ P+ +TY ++
Sbjct: 529 CKTGKLEDANRLLNEMLEKGLNPNRTTYDVV 559



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 139/309 (44%), Gaps = 23/309 (7%)

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL---RACAQARNVDQV-------- 105
           LH    +K  +K   +  K+   E+   + V +++LL   R CA A   D +        
Sbjct: 85  LHLLANSKKYSKVRSFLDKLVKNEKHTVSSVFHSLLLGGDRPCANALITDMLVLAYVTNL 144

Query: 106 -----NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
                  +F+ + +      + + N ++ A  K     EM+ V   M   + +P++ TFN
Sbjct: 145 EIHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFN 204

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK---AEYVFQKM 217
           + I+   K    +K E V + +      P + T+N++I  + K    GK   A+ + ++M
Sbjct: 205 IFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEM 264

Query: 218 TAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            A K  P+ IT+  +I   G+C  +NV  A+  F+E+ + G    + T N+++     NG
Sbjct: 265 LANKICPNEITFNTLID--GFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNG 322

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335
              EA  L++    +G+ P+  T+  L   + K  M +  +KL   + +  +VPN   F 
Sbjct: 323 KLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFN 382

Query: 336 EALETFSSS 344
             ++ F  +
Sbjct: 383 TMIDAFCKA 391



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 5/141 (3%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD   Y+ LI    K G+   A  L  EM N G +P+   YN L+  +       KA  K
Sbjct: 446 ADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYC-MEGNLKAALK 504

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
                +K    E  + N+VTYN+L++   +   ++  N L  E+ E  L P+  TY+ V 
Sbjct: 505 VRTQMEK----EGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVVR 560

Query: 129 DAYGKNGMIKEMESVLSRMKS 149
               + G I ++E  L  + S
Sbjct: 561 LEMLEKGFIPDIEGHLYNISS 581



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 5/149 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LIA + +    R A  L +EM N   + D   YN LI       + +KA  K LG  
Sbjct: 416 YNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKA-EKLLGEM 474

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             +      KPN VTYN L+       N+     +  ++ +     ++ TYN ++  + K
Sbjct: 475 LNVG----VKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCK 530

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLL 162
            G +++   +L+ M      P+  T++++
Sbjct: 531 TGKLEDANRLLNEMLEKGLNPNRTTYDVV 559


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 153/323 (47%), Gaps = 9/323 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ LI  +  +G+ + A+ LF+EM   G  P+   Y  +I     T + + A+   
Sbjct: 162 DAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAV--- 218

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F+KM+    CKPN+VTY+ ++ +  + R V+       E+ E  + P+++TYN ++ 
Sbjct: 219 -DVFKKME-QNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVH 276

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +   G + E   +   M      P+ +TF +L+D   K     +   VF+++     +P
Sbjct: 277 GFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEP 336

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRARE 247
            + T+N+++  Y   RL  +A+ VF+ M      P   +Y  +I   GYC +  +  A+ 
Sbjct: 337 DISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILIN--GYCKSRRMDEAKS 394

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +  E+     +    T + +++  C  G P EA  LF+   + G  P+  TY +L   + 
Sbjct: 395 LLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFC 454

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           K    +   KLLK M++  + PN
Sbjct: 455 KHGHLDEALKLLKSMKEKKLEPN 477



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 157/323 (48%), Gaps = 13/323 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + K G T +A+ +F +M  +GC+P+   Y+ +I +      K + +  A+ + 
Sbjct: 201 YTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLC----KDRLVNDAMEFL 256

Query: 74  QKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            +M  +ER   PN+ TYN ++        +++   LFKE+    + P+  T+  ++D   
Sbjct: 257 SEM--VERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLC 314

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K GM+ E   V   M     +PDI T+N L+D Y  ++  ++ ++VF+ ++     P   
Sbjct: 315 KEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAH 374

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE---IF 249
           ++N +I  Y K+R   +A+ +  +M      P  +TY  +  M G C  + R +E   +F
Sbjct: 375 SYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTL--MQGLC-QLGRPKEALNLF 431

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+   G    + T   +L+ +C +G   EA  L ++     + P+   Y +L +    A
Sbjct: 432 KEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIA 491

Query: 310 NMKELVQKLLKRMEQNGIVPNKR 332
              E+ ++L  ++  +G  P+ R
Sbjct: 492 GKLEVAKELFSKLFGDGTRPDIR 514



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 145/324 (44%), Gaps = 19/324 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I  + K      AM   SEM   G  P+   YN+++    H       L +A   F
Sbjct: 236 YSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIV----HGFCNLGQLNEATRLF 291

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M G +   PN VT+ IL+    +   V +   +F+ + E  + PDI TYN +MD Y  
Sbjct: 292 KEMVGRD-VMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCL 350

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
             ++ E + V   M    C P   ++N+LI+ Y K +  D+ + +   + H    P   T
Sbjct: 351 QRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVT 410

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +++++    +     +A  +F++M +    P+ +TY  +I + G+C +        DE  
Sbjct: 411 YSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTY--VILLDGFCKHGH-----LDEAL 463

Query: 254 KLGKDMKVSTLNA-------MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           KL K MK   L         ++E   + G    A  LF      G  PD  TY ++ K  
Sbjct: 464 KLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGL 523

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K  + +    L ++ME +G +PN
Sbjct: 524 LKEGLSDEAYDLFRKMEDDGFLPN 547



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 147/329 (44%), Gaps = 13/329 (3%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           LI  + +      ++ +  +M   G  PD   +NALI   L    K K   +A+  F +M
Sbjct: 134 LINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALING-LCNEGKIK---EAVELFNEM 189

Query: 77  --KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
             +G E   PN+++Y  ++    +  N      +FK++ ++   P++ TY+ ++D+  K+
Sbjct: 190 VKRGHE---PNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKD 246

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
            ++ +    LS M      P++ T+N ++  +      ++  ++FK ++     P   TF
Sbjct: 247 RLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTF 306

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDEL 252
             ++    K  +  +A  VF+ MT     P   TY  +  M GYC    ++ A+++F+ +
Sbjct: 307 TILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNAL--MDGYCLQRLMNEAKKVFEIM 364

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            + G      + N ++  YC +    EA  L    ++  + PD+ TY  L +   +    
Sbjct: 365 IRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRP 424

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           +    L K M   G  PN   ++  L+ F
Sbjct: 425 KEALNLFKEMCSYGPHPNLVTYVILLDGF 453



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 130/291 (44%), Gaps = 20/291 (6%)

Query: 55  AHLHTRDKAKALAKALGYFQKMK------------GMERCKPNIVTYNILLRACAQARNV 102
             ++ R       K LG F K K             + R   N+ + NIL+    +  +V
Sbjct: 85  VRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHV 144

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           D   ++  ++ +  + PD  T+N +++     G IKE   + + M     +P++I++  +
Sbjct: 145 DFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTV 204

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           I+   K         VFK +  +  KP + T++++I +  K RL   A     +M     
Sbjct: 205 INGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGI 264

Query: 223 TPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGLPT 278
            P+  TY  I+  +G+C+   ++ A  +F E+  +G+D+     T   +++  C  G+ +
Sbjct: 265 PPNVFTYNSIV--HGFCNLGQLNEATRLFKEM--VGRDVMPNTVTFTILVDGLCKEGMVS 320

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           EA L+FE     GV PD STY  L   Y    +    +K+ + M + G  P
Sbjct: 321 EARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAP 371



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 113/242 (46%), Gaps = 9/242 (3%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALGYFQKMKGMERCKPNIV 87
           A  +F  M   GC P    YN LI  +  +R  D+AK+L   + Y + +       P+ V
Sbjct: 357 AKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEM-YHKALN------PDTV 409

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           TY+ L++   Q     +   LFKE+      P++ TY  ++D + K+G + E   +L  M
Sbjct: 410 TYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSM 469

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           K  + +P+I+ + +LI+        +  +++F  L     +P + T+  MI    K  L 
Sbjct: 470 KEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLS 529

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            +A  +F+KM    + P+  +Y  +I  +    + S A  + DE+      + +ST   +
Sbjct: 530 DEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQML 589

Query: 268 LE 269
           L+
Sbjct: 590 LD 591



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/219 (20%), Positives = 90/219 (41%), Gaps = 6/219 (2%)

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           P +  +   + ++ K      + S+ ++M   +   ++ + N+LI+   +    D    V
Sbjct: 91  PSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFSVSV 150

Query: 179 FKSLMHSKEKPTLPTFNSMI---INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
              +      P   TFN++I    N GK +   +A  +F +M    + P+ I+Y  +I  
Sbjct: 151 LGKMFKLGIHPDAITFNALINGLCNEGKIK---EAVELFNEMVKRGHEPNVISYTTVING 207

Query: 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
                N S A ++F ++ + G    V T + ++++ C + L  +A          G+ P+
Sbjct: 208 LCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPN 267

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
             TY  +   +          +L K M    ++PN   F
Sbjct: 268 VFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTF 306



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 61/152 (40%)

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           F  ++    +P++  F   + ++ K +       +  +M   + T +  +   +I     
Sbjct: 81  FYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCR 140

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
            ++V  +  +  ++ KLG      T NA++   C  G   EA  LF      G  P+  +
Sbjct: 141 LNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVIS 200

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y  +     K     +   + K+MEQNG  PN
Sbjct: 201 YTTVINGLCKTGNTSMAVDVFKKMEQNGCKPN 232


>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
 gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 855

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 153/309 (49%), Gaps = 5/309 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q  +  D   Y+ ++  +G+  Q      L  EM   GC+P+   YN LI    H+ 
Sbjct: 349 LKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLI----HSY 404

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +A  L +A+  F +M+    C+P+ VTY  L+   A+A  +D    +++ + E+ L+PD
Sbjct: 405 GRANYLKEAMNVFNQMQ-EAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPD 463

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            +TY+ +++  GK G +     +   M    C P+++TFN++I  + K + ++   ++++
Sbjct: 464 TFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYR 523

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            + ++  +P   T++ ++   G      +AE VF +M    + P    Y  ++ ++G   
Sbjct: 524 DMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAG 583

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           NV +A + +  + + G    V T N++L  +      +EA  L ++   +G+ P   TY 
Sbjct: 584 NVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYT 643

Query: 301 LLYKAYTKA 309
           LL    T A
Sbjct: 644 LLLSCCTDA 652



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 148/322 (45%), Gaps = 40/322 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  LI +  K G   +AM ++  M+ +G  PD   Y+ +I        KA  L  A
Sbjct: 428 DRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINC----LGKAGHLPAA 483

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F +M G + C PN+VT+NI++   A+ARN +    L++++  +   PD  TY+ VM+
Sbjct: 484 HRLFCEMVG-QGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVME 542

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
             G  G ++E E V + M+     PD   + LL+D +GK    DK  Q +++++ +  +P
Sbjct: 543 VLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRP 602

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM---------YGYCD 240
            +PT NS++  + +     +A  + Q M A+   PS  TY  +++           G+C 
Sbjct: 603 NVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNFDMGFCG 662

Query: 241 NV-------------------SRAREIFDELSKL-------GKDMKVSTLNAMLEAYCMN 274
            +                      +++ D +S          ++ K   ++A+++    +
Sbjct: 663 QLMAVSGHPAHMFLLKMPPAGPDGQKVRDHVSNFLDFMHSEDRESKRGLMDAVVDFLHKS 722

Query: 275 GLPTEADLLFENSHNMGVTPDS 296
           GL  EA  ++E +    V PD+
Sbjct: 723 GLKEEAGSVWEVAAGKNVYPDA 744



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 124/275 (45%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A ALG+F  +K     K +  TY  ++    +A+   ++N L  E+      P+  TYN 
Sbjct: 340 ANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNR 399

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++ +YG+   +KE  +V ++M+   C+PD +T+  LID + K    D    +++ +  + 
Sbjct: 400 LIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAG 459

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P   T++ +I   GKA     A  +F +M     TP+ +T+  +I ++    N   A 
Sbjct: 460 LSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETAL 519

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           +++ ++   G      T + ++E     G   EA+ +F         PD   Y LL   +
Sbjct: 520 KLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLW 579

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            KA   +   +  + M Q G+ PN       L TF
Sbjct: 580 GKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTF 614



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/321 (19%), Positives = 124/321 (38%), Gaps = 45/321 (14%)

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
           +H+ D    ++   G+ +  + M +  P   T     + C     V+ V+++ +      
Sbjct: 254 VHSSDDRTIISSVEGFGKPSREMMKVTPR--TAPTPRQHCNPGYVVENVSSILRRFKWGH 311

Query: 117 LAPD-IYTYNGVMDAYGKNGMIKEMES--------------------------------- 142
            A + ++ +   MDAY  N ++K+M++                                 
Sbjct: 312 AAEEALHNFGFRMDAYQANQVLKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGR 371

Query: 143 ---------VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
                    +L  M  + CKP+ +T+N LI SYG+     +   VF  +  +  +P   T
Sbjct: 372 AKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVT 431

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + ++I  + KA     A  ++Q+M     +P   TY  II   G   ++  A  +F E+ 
Sbjct: 432 YCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMV 491

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    + T N M+  +        A  L+ +  N G  PD  TY ++ +        E
Sbjct: 492 GQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLE 551

Query: 314 LVQKLLKRMEQNGIVPNKRFF 334
             + +   M++   VP++  +
Sbjct: 552 EAEGVFAEMQRKNWVPDEPVY 572


>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 452

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 158/342 (46%), Gaps = 26/342 (7%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G+TR AM +   +     +P+  +Y+ +I    ++  K K +  A   +
Sbjct: 87  YGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTII----YSLCKDKLVIDAFDLY 142

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M  ++R  P+++TYN L+  C     + +   LF ++    + PDIYT+N ++D   K
Sbjct: 143 SQML-LKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNILVDGLCK 201

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +K+  +VL+ M      PD+IT+N L+D Y   +  +K   VF ++      P + +
Sbjct: 202 EGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHS 261

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           ++ MI    K ++  +A  + ++M +    P+ +TY  +I        +  A ++ +E+ 
Sbjct: 262 YSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMH 321

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK------------- 300
             G+   V T N++L+A C N    +A  L     + G+ PD  TY              
Sbjct: 322 NRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVDGLCKNGRLK 381

Query: 301 --------LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
                   LL K Y   ++ +    LL +ME NG  PN   F
Sbjct: 382 DAQEVYQILLIKGYHLDSLFDKALSLLSKMEDNGCTPNPVTF 423



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/321 (20%), Positives = 134/321 (41%), Gaps = 58/321 (18%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ L+  + K+G+ + A  + + M      PD   YN+L+  +   + + KA    
Sbjct: 188 DIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATF-- 245

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F  M       P++ +Y++++    + + VD+   L KE+H   +AP+  TY+ ++D
Sbjct: 246 --VFNTM-ARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLID 302

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K+G I +   +++ M +     D+IT+N L+D+  K    D                
Sbjct: 303 GLHKSGRIFDAWDLVNEMHNRGQPADVITYNSLLDALCKNHQVD---------------- 346

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRARE 247
                              KA  +  K+      P   TY  ++   G C N  +  A+E
Sbjct: 347 -------------------KAITLLTKIKDQGIQPDIYTYTILVD--GLCKNGRLKDAQE 385

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           ++  L              +++ Y ++ L  +A  L     + G TP+  T+++L +A  
Sbjct: 386 VYQIL--------------LIKGYHLDSLFDKALSLLSKMEDNGCTPNPVTFEILIRALF 431

Query: 308 KANMKELVQKLLKRMEQNGIV 328
           + +M +   +LL+ M   G++
Sbjct: 432 ENDMNDKAVELLREMIARGLL 452



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 93/202 (46%), Gaps = 28/202 (13%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R    D   YS +I  + K      A+ L  EM +    P+   Y++LI   LH   K+
Sbjct: 252 RRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDG-LH---KS 307

Query: 64  KALAKALGYFQKMKGMERCKP-NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
             +  A     +M    R +P +++TYN LL A  +   VD+   L  ++ +  + PDIY
Sbjct: 308 GRIFDAWDLVNEMH--NRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIY 365

Query: 123 TYNGVMDAYGKNGMIKEME---------------------SVLSRMKSNQCKPDIITFNL 161
           TY  ++D   KNG +K+ +                     S+LS+M+ N C P+ +TF +
Sbjct: 366 TYTILVDGLCKNGRLKDAQEVYQILLIKGYHLDSLFDKALSLLSKMEDNGCTPNPVTFEI 425

Query: 162 LIDSYGKRQAFDKMEQVFKSLM 183
           LI +  +    DK  ++ + ++
Sbjct: 426 LIRALFENDMNDKAVELLREMI 447



 Score = 44.3 bits (103), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 10/179 (5%)

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           +++  LID   K        QV +++     +P +  ++++I +  K +L   A  ++ +
Sbjct: 85  VSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTIIYSLCKDKLVIDAFDLYSQ 144

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRARE---IFDELSKLGKDMK--VSTLNAMLEAY 271
           M   + +P  ITY  +  MYG C  V R +E   +F+++  L K++K  + T N +++  
Sbjct: 145 MLLKRISPDVITYNTL--MYG-CLIVGRLKEAVGLFNQM--LLKNIKPDIYTFNILVDGL 199

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           C  G   +A  +        V PD  TY  L   Y     +     +   M + G+ P+
Sbjct: 200 CKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPD 258


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 144/316 (45%), Gaps = 5/316 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L+  +GK+      M L  EM + G RP+  +Y   I   +  R  A  + +A G  
Sbjct: 230 YSALMVALGKRRDIETVMGLLQEMESLGLRPN--IYTFTICIRILGR--AGKIDEAYGIL 285

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M     C P++VTY +L+ A   A  ++    LF ++  S   PD  TY  ++D +  
Sbjct: 286 KRMDD-AGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSD 344

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G +  ++   S M+++   PD++TF +LID+  K    D+       +      P L T
Sbjct: 345 HGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHT 404

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N++I    +     +A  +F  M ++    +  TY   I  YG      +A + F+++ 
Sbjct: 405 YNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMK 464

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    +   NA L +    G   EA   F      G+ PD+ TY +L + Y KA   +
Sbjct: 465 TNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVD 524

Query: 314 LVQKLLKRMEQNGIVP 329
              KLL  ME+NG  P
Sbjct: 525 DAIKLLSEMEENGCDP 540



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 150/321 (46%), Gaps = 5/321 (1%)

Query: 14   YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
            Y+ LI  + K   T +A  LF +M+N+GC PD   YN  + A      K+  + +    +
Sbjct: 791  YNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDA----LGKSGKIKELFDLY 846

Query: 74   QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++M     CKPN +T+NI++    ++ ++D+   L+ +L     +P  +TY  ++D   K
Sbjct: 847  EEML-FRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLK 905

Query: 134  NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
             G ++E +     M    C P+   +N+L++ +GK+   +   ++F+ ++    +P L +
Sbjct: 906  LGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKS 965

Query: 194  FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            ++ M+           A + F+++      P  + Y  +I   G    V  A  +FDE+ 
Sbjct: 966  YSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMR 1025

Query: 254  KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
              G    + T NA++    + G+  EA  ++E     G+ P+  TY  L + ++ +   +
Sbjct: 1026 NRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPD 1085

Query: 314  LVQKLLKRMEQNGIVPNKRFF 334
                + K+M   G  PN   F
Sbjct: 1086 RAYAVYKKMMVGGCRPNTGTF 1106



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 145/336 (43%), Gaps = 16/336 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++  I ++G+ G+   A  +   M ++GC PD   Y  LI A  +    A  L  A   F
Sbjct: 265 FTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCN----AGKLNNAKELF 320

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KMK     KP+ VTY  LL   +   ++D +   + E+      PD+ T+  ++DA  K
Sbjct: 321 LKMKASSH-KPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCK 379

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + E    L  MK     P++ T+N LI    +    D+  ++F S+     + T  T
Sbjct: 380 VGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYT 439

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDE 251
           +   I  YGK+   GKA   F+KM      P+ +   C  ++Y   +   +  A+E F+ 
Sbjct: 440 YILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVA--CNASLYSLAEQGRLEEAKEFFNG 497

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           L K G      T N ++  Y   G   +A  L       G  P+      L     KA+ 
Sbjct: 498 LKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADR 557

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
            +   K+ +RM++  + P        + T+++ LAG
Sbjct: 558 VDEAWKMFQRMKEMKLAP-------TVVTYNTLLAG 586



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 113/247 (45%)

Query: 84   PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
            P++  YN L+    +AR  +    LF ++  +   PD++TYN  +DA GK+G IKE+  +
Sbjct: 786  PSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDL 845

Query: 144  LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
               M    CKP+ IT N++I    K  + DK   ++  LM     PT  T+  +I    K
Sbjct: 846  YEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLK 905

Query: 204  ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
                 +A+  F++M      P+   Y  ++  +G   +V  A E+F  + K G    + +
Sbjct: 906  LGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKS 965

Query: 264  LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
             + M++  CM G   +A   FE     G+ PD   Y L+     ++   E    L   M 
Sbjct: 966  YSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMR 1025

Query: 324  QNGIVPN 330
              GI P+
Sbjct: 1026 NRGITPD 1032



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 113/258 (43%), Gaps = 32/258 (12%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y+ D   ++ LI  + K G+   A      M+  G  P+   YN LI   L      +AL
Sbjct: 363 YLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEAL 422

Query: 67  -------------------------------AKALGYFQKMKGMERCKPNIVTYNILLRA 95
                                           KA+  F+KMK      PNIV  N  L +
Sbjct: 423 ELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMK-TNGIVPNIVACNASLYS 481

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
            A+   +++    F  L +  LAPD  TYN +M  YGK G + +   +LS M+ N C P+
Sbjct: 482 LAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPE 541

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
           ++  N LID+  K    D+  ++F+ +   K  PT+ T+N+++   GK     +A  +F+
Sbjct: 542 VVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFK 601

Query: 216 KMTAMKYTPSFITYECII 233
            M A    P+ I++  ++
Sbjct: 602 GMIADDCPPNTISFNTLL 619



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 157/373 (42%), Gaps = 52/373 (13%)

Query: 12  GIYSKLIAV------MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA 65
           GI   ++A       + ++G+   A   F+ ++  G  PD   YN L+  +     KA  
Sbjct: 467 GIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCY----GKAGR 522

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           +  A+    +M+    C P +V  N L+    +A  VD+   +F+ + E  LAP + TYN
Sbjct: 523 VDDAIKLLSEME-ENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYN 581

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++   GK G ++E  ++   M ++ C P+ I+FN L+D   K    D   ++   +   
Sbjct: 582 TLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEM 641

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI---ITMYGYCDNV 242
              P + T+N++I    K      A ++F +M  + Y P ++T   +   +   G  ++ 
Sbjct: 642 NCFPDVLTYNTVIYGLIKENRVNYAFWLFHQMKKVIY-PDYVTLCTLLPGVIKDGRIEDA 700

Query: 243 SR-AREIFDEL-------------------SKLGKDMKV-------------STLNAMLE 269
            R A+E    +                   +++G+ +               S L  +++
Sbjct: 701 FRVAKEFVHHVGDHADGSFWEDLMGGILIEAEIGQSILFAESLVCNTICEDDSVLIPLVK 760

Query: 270 AYCMNGLPTEA-DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             C +G   +A ++  + + +  +TP    Y  L     KA + E+   L  +M+  G  
Sbjct: 761 FLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCT 820

Query: 329 PNK---RFFLEAL 338
           P+      FL+AL
Sbjct: 821 PDVFTYNLFLDAL 833



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 121/298 (40%), Gaps = 5/298 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
            +SEM   G  PD   +  LI A      K   + +A G    MK  +   PN+ TYN L
Sbjct: 354 FWSEMEADGYLPDVVTFTILIDALC----KVGKVDEAFGTLDVMK-KQGVAPNLHTYNTL 408

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +   +D+   LF  +    L    YTY   +D YGK+G   +      +MK+N  
Sbjct: 409 ICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGI 468

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            P+I+  N  + S  ++   ++ ++ F  L      P   T+N ++  YGKA     A  
Sbjct: 469 VPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIK 528

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +  +M      P  +    +I      D V  A ++F  + ++     V T N +L    
Sbjct: 529 LLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLG 588

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             G   EA  LF+        P++ ++  L     K    +L  K+L RM +    P+
Sbjct: 589 KEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPD 646



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 104/258 (40%), Gaps = 35/258 (13%)

Query: 108 LFKELHESILAPDIYTYNGVMDAYGKN-------GMIKEMES------------------ 142
           +++ +    + P + TY+ +M A GK        G+++EMES                  
Sbjct: 214 VYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILG 273

Query: 143 ----------VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
                     +L RM    C PD++T+ +LID+       +  +++F  +  S  KP   
Sbjct: 274 RAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRV 333

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+ +++  +         +  + +M A  Y P  +T+  +I        V  A    D +
Sbjct: 334 TYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVM 393

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            K G    + T N ++          EA  LF +  ++G+   + TY L    Y K+   
Sbjct: 394 KKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGES 453

Query: 313 ELVQKLLKRMEQNGIVPN 330
               K  ++M+ NGIVPN
Sbjct: 454 GKAIKTFEKMKTNGIVPN 471



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 96/226 (42%), Gaps = 7/226 (3%)

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           Y+Y G++    K+G  +E   V  RM S   KP + T++ L+ + GKR+  + +  + + 
Sbjct: 193 YSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQE 252

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           +     +P + TF   I   G+A    +A  + ++M      P  +TY  +I        
Sbjct: 253 MESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGK 312

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           ++ A+E+F ++          T   +L+ +  +G        +      G  PD  T+ +
Sbjct: 313 LNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTI 372

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
           L  A  K    +     L  M++ G+ PN       L T+++ + G
Sbjct: 373 LIDALCKVGKVDEAFGTLDVMKKQGVAPN-------LHTYNTLICG 411


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 151/332 (45%), Gaps = 8/332 (2%)

Query: 3   KQRWYIADTGIYSKLI---AVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT 59
           K R   A+   Y+ LI     MGK G+   A  +  EMR  G  P+   +N LI      
Sbjct: 190 KVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFC-- 247

Query: 60  RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
             K K ++ A+  F +M   +  KPN+VTYN L+        V++  AL  ++  S L P
Sbjct: 248 --KDKNVSAAMKVFAEMN-RQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKP 304

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           +I T+N +++ + KN M+K+   +   M      P++ T+N+LID+Y K +  +    ++
Sbjct: 305 NIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALY 364

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           + ++     P + T+N +I    +      A  +  +M         ITY  +I      
Sbjct: 365 RIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNK 424

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             + +A  + DE+ + G      T N M++ YC  G    A  L      +G   + +TY
Sbjct: 425 GEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATY 484

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
            +L K + K +  E    LL  M + G++PN+
Sbjct: 485 NVLIKGFCKKDKLEDANGLLNEMLEKGLIPNR 516



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 137/294 (46%), Gaps = 15/294 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALG 71
           ++ LI    K      AM +F+EM   G +P+   YN+LI    +    ++A AL   + 
Sbjct: 239 FNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQM- 297

Query: 72  YFQKMKGMERC-KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
                  +  C KPNI+T+N LL    + + V Q   LF ++ +  + P++ TYN ++DA
Sbjct: 298 -------VNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDA 350

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           Y K+  +++  ++   M      PD+ T+N LI    ++   +    +   +     K  
Sbjct: 351 YCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKAD 410

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREI 248
           L T+N +I +        KA  +  +M      PS +TY  +I   GYC   N+  A  +
Sbjct: 411 LITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMID--GYCKEGNLRAALNL 468

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             ++ K+G+   V+T N +++ +C      +A+ L       G+ P+  TY+++
Sbjct: 469 RSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIV 522



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 135/297 (45%), Gaps = 22/297 (7%)

Query: 56  HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 115
           +L TR   +A  +A  Y  K+        ++ + N L+    +   +  +  ++KE+   
Sbjct: 106 NLRTRLGFEAFKRASDYGLKL--------SVTSCNPLMSGLVKVGEIGDMEFVYKEMIRR 157

Query: 116 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 175
            + P + ++N V++   K G + +   ++  MK      ++IT+N LID Y K     KM
Sbjct: 158 RIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKM 217

Query: 176 ---EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 232
              + + K +      P   TFN +I  + K +    A  VF +M      P+ +TY  +
Sbjct: 218 YKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSL 277

Query: 233 ITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
           I   G C+N  V+ A  + D++        + T NA+L  +C N +  +A  LF++    
Sbjct: 278 IN--GLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQ 335

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
           G+TP+ +TY +L  AY K    E    L + M   G+ P+       + T++  +AG
Sbjct: 336 GITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPD-------VSTYNCLIAG 385



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 91/239 (38%), Gaps = 38/239 (15%)

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           AY KN   +       R      K  + + N L+    K      ME V+K ++  + +P
Sbjct: 102 AYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEP 161

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY------------- 236
           TL +FN +I    K     KA  + + M     + + ITY  +I  Y             
Sbjct: 162 TLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKAD 221

Query: 237 -----------------------GYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
                                  G+C   NVS A ++F E+++ G    V T N+++   
Sbjct: 222 AILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGL 281

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           C NG   EA  L +   N  + P+  T+  L   + K  M +   +L   M + GI PN
Sbjct: 282 CNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPN 340



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD   Y+ LI  +  KG+ + A+ L  EM   G +P    YN +I  +     K   L  
Sbjct: 409 ADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYC----KEGNLRA 464

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL    +M+ + R   N+ TYN+L++   +   ++  N L  E+ E  L P+  TY  V 
Sbjct: 465 ALNLRSQMEKVGRL-ANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVT 523

Query: 129 DAYGKNGMIKEMESVLSRM 147
           +   + G + ++E  L ++
Sbjct: 524 EEMMEKGFVPDIEGHLYKV 542



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 77/177 (43%), Gaps = 3/177 (1%)

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           I  ++L+ +Y K        + FK       K ++ + N ++    K    G  E+V+++
Sbjct: 94  IIVDILVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKE 153

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M   +  P+ I++  +I        +++A +I +++   G    V T N +++ YC  G 
Sbjct: 154 MIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGK 213

Query: 277 PT---EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                +AD + +     G+ P+  T+ +L   + K        K+   M + G+ PN
Sbjct: 214 IGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPN 270



 Score = 44.3 bits (103), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LIA + +KG    A  L SEM     + D   YN LI +  +  +    + KA
Sbjct: 375 DVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGE----MKKA 430

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           L    +M  KG+   KP+ +TYN ++    +  N+     L  ++ +     ++ TYN +
Sbjct: 431 LRLLDEMCRKGL---KPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVL 487

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164
           +  + K   +++   +L+ M      P+ +T+ ++ +
Sbjct: 488 IKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTE 524


>gi|255552808|ref|XP_002517447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543458|gb|EEF44989.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 139/270 (51%), Gaps = 9/270 (3%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           ++L     +  + R  P++  YN++LR   +A+  D  + LF E+ +  L+PD YTY+ +
Sbjct: 116 RSLALLDWINEVARYSPSVFAYNVVLRNVLRAKKWDLAHGLFDEMRQRALSPDRYTYSTL 175

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           + ++GK GM  E    L +M+ ++   D++ ++ LI+   K   + K   +F  L  S  
Sbjct: 176 ITSFGKAGMFDESLFWLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGI 235

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P L  +NSMI  +GKARL  +A  +  +M  +   P  ++Y  ++++Y   +    A  
Sbjct: 236 TPDLVAYNSMINVFGKARLFREARMLVHEMREVGVLPDTVSYSTLLSVYVENEKFVEALS 295

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F E+++    + + T N M++ Y    +  EAD LF +   MG+ P+  +Y  L K Y 
Sbjct: 296 VFAEMNEANCSLDLMTCNIMIDVYGQLDMVKEADRLFWSMRKMGIEPNVVSYNTLLKVYG 355

Query: 308 KA-------NMKELVQKLLKRMEQNGIVPN 330
           +A       ++  L+Q+  K +EQN +  N
Sbjct: 356 EAELFGEAIHLFRLMQR--KEIEQNVVTYN 383



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 156/327 (47%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR    D   YS LI   GK G    +++   +M       D  +Y+ LI       D 
Sbjct: 161 RQRALSPDRYTYSTLITSFGKAGMFDESLFWLQQMEQDRVSGDLVLYSNLIELSRKLCDY 220

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +AR   +   L  E+ E  + PD  
Sbjct: 221 SKAIS----IFMRLKR-SGITPDLVAYNSMINVFGKARLFREARMLVHEMREVGVLPDTV 275

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV + M    C  D++T N++ID YG+     + +++F S+
Sbjct: 276 SYSTLLSVYVENEKFVEALSVFAEMNEANCSLDLMTCNIMIDVYGQLDMVKEADRLFWSM 335

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG+A L G+A ++F+ M   +   + +TY  +I +YG     
Sbjct: 336 RKMGIEPNVVSYNTLLKVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEH 395

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+ K G +    T + ++  +   G    A +LF+   + GV  D   Y+ +
Sbjct: 396 EKATNLVQEMQKRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTM 455

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  ++   I+P
Sbjct: 456 IVAYERAGLVAHAKRLLHDLKCPDIIP 482



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 148/298 (49%), Gaps = 7/298 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +F  ++ SG  PD   YN++I        KA+   +
Sbjct: 202 GDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGITPDLVAYNSMINVF----GKARLFRE 257

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +M+ +    P+ V+Y+ LL    +     +  ++F E++E+  + D+ T N ++
Sbjct: 258 ARMLVHEMREVG-VLPDTVSYSTLLSVYVENEKFVEALSVFAEMNEANCSLDLMTCNIMI 316

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE- 187
           D YG+  M+KE + +   M+    +P+++++N L+  YG+ + F +   +F+ LM  KE 
Sbjct: 317 DVYGQLDMVKEADRLFWSMRKMGIEPNVVSYNTLLKVYGEAELFGEAIHLFR-LMQRKEI 375

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +  + T+N+MI  YGK+    KA  + Q+M      P+ ITY  II+++G    + RA  
Sbjct: 376 EQNVVTYNTMIKIYGKSLEHEKATNLVQEMQKRGIEPNAITYSTIISIWGKAGKLDRAAM 435

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           +F +L   G ++       M+ AY   GL   A  L  +     + P  +  K+L +A
Sbjct: 436 LFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHDLKCPDIIPRDTAIKILARA 493



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 149/357 (41%), Gaps = 37/357 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I V GK    R A  L  EMR  G  PD   Y+ L++ ++      +   +A
Sbjct: 238 DLVAYNSMINVFGKARLFREARMLVHEMREVGVLPDTVSYSTLLSVYVEN----EKFVEA 293

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  F +M     C  +++T NI++    Q   V + + LF  + +  + P++ +YN ++ 
Sbjct: 294 LSVFAEMNEAN-CSLDLMTCNIMIDVYGQLDMVKEADRLFWSMRKMGIEPNVVSYNTLLK 352

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YG+  +  E   +   M+  + + +++T+N +I  YGK    +K   + + +     +P
Sbjct: 353 VYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQKRGIEP 412

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T++++I  +GKA    +A  +FQK+ +       + Y+ +I  Y     V+ A+ + 
Sbjct: 413 NAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLL 472

Query: 250 DELS-------------------------------KLGKDMKVSTLNAMLEAYCMNGLPT 278
            +L                                  G+   +S    M+E +  N  P 
Sbjct: 473 HDLKCPDIIPRDTAIKILARAGRIEEATWVFRQAFDAGEVKDISVFRCMIELFSRNKRPA 532

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM-EQNGIVPNKRFF 334
               +FE     G  PDS    L+  AY K    E    + + M E+  + P++  F
Sbjct: 533 NVVEVFEKMRGAGYFPDSDVIALVLNAYGKLREFEKADAVYREMQEEECVFPDEVHF 589



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 118/245 (48%), Gaps = 13/245 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I++ GK G+   A  LF ++R+SG   D  +Y  +I A+    ++A  +A A    
Sbjct: 417 YSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAY----ERAGLVAHAKRLL 472

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             +K    C P+I+  +  ++  A+A  +++   +F++  ++    DI  +  +++ + +
Sbjct: 473 HDLK----C-PDIIPRDTAIKILARAGRIEEATWVFRQAFDAGEVKDISVFRCMIELFSR 527

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP- 192
           N     +  V  +M+     PD     L++++YGK + F+K + V++ +   +E+   P 
Sbjct: 528 NKRPANVVEVFEKMRGAGYFPDSDVIALVLNAYGKLREFEKADAVYREM--QEEECVFPD 585

Query: 193 -TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
                M+  YG  +     E +F+K+ +         +  + ++Y   + ++ A  I + 
Sbjct: 586 EVHFQMLSLYGARKDFIMVESLFEKLDSDPNINKKELHLVVASIYERQNRLNDASRIMNR 645

Query: 252 LSKLG 256
           +SK G
Sbjct: 646 MSKEG 650


>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 151/328 (46%), Gaps = 18/328 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  LI  + K G T  A+ L   M    C+P+   YN +I +      K + + +A
Sbjct: 132 DVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLC----KDRQVTEA 187

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F +M  KG+    P+I TYN L+ A         V  L  E+ +S + PD+ ++N V
Sbjct: 188 FNLFSEMVTKGIS---PDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTV 244

Query: 128 MDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +DA  K G + E   V+ +M +   C P++I++N LI+ Y K Q  DK   +F  +   +
Sbjct: 245 VDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQE 304

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
             P   T++++I           A  +F +M A    P+ +TY   I +   C N  ++ 
Sbjct: 305 LIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYR--ILLDYLCKNRYLAE 362

Query: 245 AREIFD--ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           A  +    E S L  D++V+  N  ++  C  G    A  LF N  + G+ PD  TY ++
Sbjct: 363 AMALLKAIEGSNLDPDIQVN--NIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIM 420

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
                +  + +   KL + M++NG   N
Sbjct: 421 INGLCRRGLLDEASKLFREMDENGCTLN 448



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 118/268 (44%), Gaps = 6/268 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEM-RNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           D   ++ ++  + K+G+   A  +  +M +  GC P+   YN LI  +     K + + K
Sbjct: 237 DVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYC----KIQRIDK 292

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A+  F +M   E   P+ VTY+ L+        +    ALF E+      P++ TY  ++
Sbjct: 293 AMYLFGEMCRQEL-IPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILL 351

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D   KN  + E  ++L  ++ +   PDI   N+ ID   +    +    +F +L     +
Sbjct: 352 DYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQ 411

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P + T++ MI    +  L  +A  +F++M     T +   Y  I   +   +  SRA ++
Sbjct: 412 PDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQL 471

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGL 276
             E+   G     ST+   ++    +GL
Sbjct: 472 LQEMVARGFSADASTMTLFVKMLSDDGL 499



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 136/307 (44%), Gaps = 16/307 (5%)

Query: 37  MRNSGCRPDPSVYNALITAHL---HTRDKAKALA-----KALGYFQKMKGMERCKPNIVT 88
           MR    RP  +   +L+   L   H R  +K+L       A+  F +M  M+   P+ V 
Sbjct: 5   MRRPSSRPSGTQMLSLLAHFLSLSHNRFHSKSLHFNTIDGAISSFNRMLRMQP-PPSTVD 63

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG--KNGMIKEMESVLSR 146
           +N LL + A+ ++   + +L  ++    + P+IYT + +++++     G I E   +  +
Sbjct: 64  FNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRGKIGEALHLFDK 123

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           M     +PD++T+  LI+   K        ++  S++    +P +  +N++I +  K R 
Sbjct: 124 MIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQ 183

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL--SKLGKDMKVSTL 264
             +A  +F +M     +P   TY  +I              + +E+  SK+  D  V + 
Sbjct: 184 VTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPD--VVSF 241

Query: 265 NAMLEAYCMNGLPTEA-DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
           N +++A C  G  TEA D++ +     G  P+  +Y  L   Y K    +    L   M 
Sbjct: 242 NTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMC 301

Query: 324 QNGIVPN 330
           +  ++P+
Sbjct: 302 RQELIPD 308



 Score = 37.7 bits (86), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 13/172 (7%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  L+  + K      AM L   +  S   PD  V N  I        +A  L  A   F
Sbjct: 347 YRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMC----RAGELEAARDLF 402

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             +  KG++   P++ TY+I++    +   +D+ + LF+E+ E+    +   YN +   +
Sbjct: 403 SNLSSKGLQ---PDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGF 459

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
            +N        +L  M +     D  T  L +    K  + D ++Q  K ++
Sbjct: 460 LRNNETSRAIQLLQEMVARGFSADASTMTLFV----KMLSDDGLDQSLKQIL 507


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 148/327 (45%), Gaps = 5/327 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R  + D   Y+ +IA + K      AM + + M  +G  PD   YN++    LH    +
Sbjct: 224 DRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSI----LHGYCSS 279

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
               +A+G+ +KM+  +  +P++VTY++L+    +     +   +F  + +  L P+I T
Sbjct: 280 GQPKEAIGFLKKMRS-DGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITT 338

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++  Y   G + EM  +L  M  N   PD   F++LI +Y  +   D+   VF  + 
Sbjct: 339 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMR 398

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                P   T+ ++I    K+     A   F++M     +P  I Y  +I     C+   
Sbjct: 399 QQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWE 458

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           RA E+  E+   G  +     N++++++C  G   E++ LFE    +GV P+  TY  L 
Sbjct: 459 RAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLI 518

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
             Y  A   +   KLL  M   G+ PN
Sbjct: 519 NGYCLAGKMDEAMKLLSGMVSVGLKPN 545



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 151/321 (47%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  ++S LI     +G+   AM +FS+MR  G  P+   Y A+I        K+  +  A
Sbjct: 370 DHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILC----KSGRVEDA 425

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           + YF++M   E   P  + YN L+         ++   L  E+ +  +  +   +N ++D
Sbjct: 426 MLYFEQMID-EGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIID 484

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           ++ K G + E E +   M     KP++IT+N LI+ Y      D+  ++   ++    KP
Sbjct: 485 SHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKP 544

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T++++I  Y K      A  +F++M +   +P  ITY  I+         + A+E++
Sbjct: 545 NTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 604

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             +++ G  +++ST N +L   C N L  +A  +F+N   M +  ++ T+ ++  A  K 
Sbjct: 605 VRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKV 664

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +  + L      NG+VPN
Sbjct: 665 GRNDEAKDLFVAFSSNGLVPN 685



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 137/324 (42%), Gaps = 7/324 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  LI    + G+  L       +   G R D   +  L+      +  + A+   
Sbjct: 86  DLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIV 145

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNAL--FKELHESILAPDIYTYNG 126
           L    ++     C PN+ +YNILL+  C + R+ + +  L    +       PD+ +Y  
Sbjct: 146 LRRMTELG----CIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTT 201

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           V++ + K G   +  S    M      PD++T+N +I +  K QA DK  +V  +++ + 
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNG 261

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P   T+NS++  Y  +    +A    +KM +    P  +TY  ++           AR
Sbjct: 262 VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEAR 321

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           +IFD ++K G   +++T   +L+ Y   G   E   L +     G+ PD   + +L  AY
Sbjct: 322 KIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAY 381

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
                 +    +  +M Q G+ PN
Sbjct: 382 ANQGKVDQAMLVFSKMRQQGLNPN 405



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 135/299 (45%), Gaps = 17/299 (5%)

Query: 44  PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNV 102
           PD   Y  LI             A ALG   K KG    + + + +  LL+  CA  R  
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFA-ALGNVIK-KGF---RVDAIAFTPLLKGLCADKRTS 139

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ---CKPDIITF 159
           D ++ + + + E    P++++YN ++         +E   +L  M  ++     PD++++
Sbjct: 140 DAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 199

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
             +I+ + K    DK    +  ++     P + T+NS+I    KA+   KA  V   M  
Sbjct: 200 TTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVK 259

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL---GKDMKVSTLNAMLEAYCMNGL 276
               P  +TY  I  ++GYC +  + +E    L K+   G +  V T + +++  C NG 
Sbjct: 260 NGVMPDCMTYNSI--LHGYCSS-GQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGR 316

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKRMEQNGIVPNKRFF 334
             EA  +F++    G+ P+ +TY  L + Y TK  + E+   LL  M +NGI P+   F
Sbjct: 317 CMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEM-HGLLDLMVRNGIHPDHYVF 374



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 143/360 (39%), Gaps = 48/360 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-------------LHTR 60
           Y  +I ++ K G+   AM  F +M + G  P   VYN+LI                L   
Sbjct: 409 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 468

Query: 61  DKAKAL---------------AKALGYFQKMKGMER--CKPNIVTYNILLRACAQARNVD 103
           D+   L                + +   +  + M R   KPN++TYN L+     A  +D
Sbjct: 469 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMD 528

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +   L   +    L P+  TY+ +++ Y K   +++   +   M+S+   PDIIT+N+++
Sbjct: 529 EAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIIL 588

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
               + +     ++++  +  S  +  L T+N ++    K +L   A  +FQ +  M   
Sbjct: 589 QGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLK 648

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
               T+  +I           A+++F   S  G      T   M E     GL  E D L
Sbjct: 649 LEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQL 708

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN------GIVPNKRFFLEA 337
           F +  + G T DS                 +V++LL+R E         ++  K F LEA
Sbjct: 709 FLSMEDNGCTVDSGMLNF------------IVRELLQRGEITRAGTYLSMIDEKHFSLEA 756



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 88/211 (41%), Gaps = 16/211 (7%)

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY-G 202
           ++R  +++  PD+ T+ +LI    +    D       +++    +     F  ++     
Sbjct: 75  MARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 134

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM--- 259
             R     + V ++MT +   P+  +Y   I + G CD  +R++E  + L  +  D    
Sbjct: 135 DKRTSDAMDIVLRRMTELGCIPNVFSYN--ILLKGLCDE-NRSQEALELLHMMADDRGGG 191

Query: 260 ---KVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKAYTKANMKE 313
               V +   ++  +   G   ++D  +   H M   G+ PD  TY  +  A  KA   +
Sbjct: 192 SPPDVVSYTTVINGFFKEG---DSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMD 248

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
              ++L  M +NG++P+   +   L  + SS
Sbjct: 249 KAMEVLNTMVKNGVMPDCMTYNSILHGYCSS 279


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 144/300 (48%), Gaps = 9/300 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA-HLHTR-DKAKA 65
           + +   Y+ LI     KG    A     EM N G       YN LI A  L  R ++A+ 
Sbjct: 319 VPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAED 378

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           + K +    + KG+E   P++VTYNI +    +  N  +  +LF E+ E  + P + TY 
Sbjct: 379 MIKEM----REKGVE---PDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYT 431

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++D +GK   + E E    +       PDII FN LID +      D+  Q+ K + ++
Sbjct: 432 SLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNA 491

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
           K  P   TFN+++  Y + R   +A+ +  +M      P  I+Y  +I+ Y    ++  A
Sbjct: 492 KVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDA 551

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            E+FDE+  LG D  + T NA+++ Y   G    A+ L     + G+TPD STY  + +A
Sbjct: 552 LEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTYLYVIEA 611



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 160/341 (46%), Gaps = 17/341 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+  I+ + K+ +   A  +  ++  SG  P+   YNALI    +  D    L KA
Sbjct: 286 DCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGD----LDKA 341

Query: 70  LGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
             Y  +M  M R    ++ TYN+L+ A    + +++   + KE+ E  + PD+ TYN  +
Sbjct: 342 FAYRDEM--MNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQI 399

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + Y + G  K+  S+   M     +P + T+  LID +GKR    + E+ FK  +     
Sbjct: 400 NGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGML 459

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAM---KYTPSFITYECIITMYGYCDN--VS 243
           P +  FN++I  +    + G  +  FQ +  M   K  P  +T+  +  M GYC    V 
Sbjct: 460 PDIIMFNALIDGHC---VNGNIDRAFQLLKEMDNAKVVPDEVTFNTL--MQGYCRERKVE 514

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A+++ DE+ + G      + N ++  Y   G   +A  +F+   ++G  P   TY  L 
Sbjct: 515 EAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALI 574

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           + Y+K    +  ++LL+ M+  GI P+   +L  +E   ++
Sbjct: 575 QGYSKIGEADHAEELLREMQSKGITPDDSTYLYVIEAMKTN 615



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 150/317 (47%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ +I ++ ++G+ + A      M   G +P+   YN +I  +   R K +A +K    F
Sbjct: 220 FNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYC-LRGKFEAASKI---F 275

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + MK  +  KP+  TYN  +    + R +++ + +  +L ES L P+  TYN ++D    
Sbjct: 276 KTMKD-KNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCN 334

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + +  +    M +      + T+NLLI +    +  ++ E + K +     +P + T
Sbjct: 335 KGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVT 394

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N  I  Y +     KA  +F +M      P+  TY  +I ++G  + +S A E F +  
Sbjct: 395 YNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSI 454

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           K G    +   NA+++ +C+NG    A  L +   N  V PD  T+  L + Y +    E
Sbjct: 455 KEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVE 514

Query: 314 LVQKLLKRMEQNGIVPN 330
             +KLL  M++ GI P+
Sbjct: 515 EAKKLLDEMKERGIKPD 531



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 121/278 (43%), Gaps = 5/278 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R  +A    Y+ LI  +  + +   A  +  EMR  G  PD   YN  I  +    +  
Sbjct: 350 NRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAK 409

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           KAL+     F +M   +  +P + TY  L+    +   + +    FK+  +  + PDI  
Sbjct: 410 KALS----LFDEMVE-KNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIM 464

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           +N ++D +  NG I     +L  M + +  PD +TFN L+  Y + +  ++ +++   + 
Sbjct: 465 FNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMK 524

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
               KP   ++N++I  Y K      A  VF +M ++ + P+ +TY  +I  Y       
Sbjct: 525 ERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEAD 584

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
            A E+  E+   G     ST   ++EA   N    E D
Sbjct: 585 HAEELLREMQSKGITPDDSTYLYVIEAMKTNDDLVEND 622



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 106/236 (44%), Gaps = 4/236 (1%)

Query: 108 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
           +++E+ +  +   I T+N +++   + G  K+ +  +  M+    KP+++T+N +I+ Y 
Sbjct: 204 VYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYC 263

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
            R  F+   ++FK++     KP   T+NS I    K R   +A  V  K+      P+ +
Sbjct: 264 LRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAV 323

Query: 228 TYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
           TY  +I   G C+  ++ +A    DE+   G    V T N ++ A  +     EA+ + +
Sbjct: 324 TYNALID--GCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIK 381

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
                GV PD  TY +    Y +    +    L   M +  I P    +   ++ F
Sbjct: 382 EMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVF 437



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 6/177 (3%)

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP---TFNSMIINYGKARLQGKAEYV 213
           + F+LL+ +Y +   F K ++  + L   KE   +P   T NS++    K      A +V
Sbjct: 148 LVFDLLLSAYCQ---FRKPDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFV 204

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           +++M  M    S +T+  +I +        +A++    +   G    V T N ++  YC+
Sbjct: 205 YEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCL 264

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            G    A  +F+   +  + PD  TY        K    E    +L ++ ++G+VPN
Sbjct: 265 RGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPN 321


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 155/350 (44%), Gaps = 29/350 (8%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI----------TAHLHT 59
           D+  YS LI    K    + A  L  EM   G  P  +VYN +I          +A +H 
Sbjct: 166 DSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHY 225

Query: 60  RDKAK--------------ALAKALGYFQKMKGMER-----CKPNIVTYNILLRACAQAR 100
           RD  +              AL K+         +E      C PN+VTYN L+    +  
Sbjct: 226 RDMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLG 285

Query: 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
           N+D+   LF ++ E+  +PD++TYN ++D Y K    ++   +L  M    C+P+ IT+N
Sbjct: 286 NMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYN 345

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
            L+DS  K   +     + + ++    KP+  TFN MI  + K      A  +FQ MT  
Sbjct: 346 TLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDR 405

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
              P   TY  +I+     + +  AR++ + +++ G    V T N+++   C      EA
Sbjct: 406 GCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEA 465

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             ++E   N G   D  T   L     K+   +  +KLL+ ME+NG  P+
Sbjct: 466 YEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPD 515



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 139/317 (43%), Gaps = 7/317 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + K  +   A  +  +M  +GC P+   YN LI        K   + +A+  F
Sbjct: 239 YTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFC----KLGNMDEAVVLF 294

Query: 74  QKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            +M     C P++ TYNIL+   C Q R  D    L +E+ +    P+  TYN +MD+  
Sbjct: 295 NQMLE-NSCSPDVFTYNILIDGYCKQERPQDGAK-LLQEMVKYGCEPNFITYNTLMDSLV 352

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K+G   +  ++   M    CKP   TFNL+ID + K    D   ++F+ +      P + 
Sbjct: 353 KSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIY 412

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N MI    +A     A  + ++MT     P  +TY  I++       V  A E+++ L
Sbjct: 413 TYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVL 472

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G  + V T + +++  C +    +A+ L       G  PD   Y +L   + KA+  
Sbjct: 473 RNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQL 532

Query: 313 ELVQKLLKRMEQNGIVP 329
           +        M   G VP
Sbjct: 533 DKSLAFFSEMLDKGCVP 549



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 140/316 (44%), Gaps = 5/316 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ +I +  K GQ  LA  LF  M + GC PD   YN +I+       +A  +  A    
Sbjct: 379 FNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGAC----RANRIDDARQLL 434

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M     C P++VTYN ++    +A  VD+   +++ L       D+ T + ++D   K
Sbjct: 435 ERMTE-AGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCK 493

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +  + + E +L  M+ N   PD++ + +LI  + K    DK    F  ++     PT+ T
Sbjct: 494 SRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVIT 553

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           ++ +I    K+        + + M     TP  I Y  +I      D+   A E++  + 
Sbjct: 554 YSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMK 613

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G    V T N +++  C      EA  L E   + G  PD+ TY  ++  + K+   +
Sbjct: 614 QTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHD 673

Query: 314 LVQKLLKRMEQNGIVP 329
              +L + M+  G  P
Sbjct: 674 KAFRLFQAMKSRGCSP 689



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 151/348 (43%), Gaps = 34/348 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL---HTRDKAKALAKAL 70
           Y+ LI    K G    A+ LF++M  + C PD   YN LI  +      +D AK L + +
Sbjct: 274 YNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMV 333

Query: 71  GY-------------------------FQKMKGMER--CKPNIVTYNILLRACAQARNVD 103
            Y                         F   + M R  CKP+  T+N+++    +   +D
Sbjct: 334 KYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLD 393

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
               LF+ + +    PDIYTYN ++    +   I +   +L RM    C PD++T+N ++
Sbjct: 394 LAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIV 453

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
               K    D+  +V++ L +      + T +++I    K+R    AE + ++M      
Sbjct: 454 SGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSA 513

Query: 224 PSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
           P  + Y   I ++G+C  D + ++   F E+   G    V T + +++  C +    +  
Sbjct: 514 PDVVAY--TILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGC 571

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           +L +     GVTPD+  Y  +     K++  +   +L K M+Q G  P
Sbjct: 572 MLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAP 619



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 117/256 (45%), Gaps = 11/256 (4%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D    S LI  + K  +   A  L  EM  +G  PD   Y  LI    H   KA  L
Sbjct: 477 YFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILI----HGFCKADQL 532

Query: 67  AKALGYFQKM--KGMERCKPNIVTYNILL-RACAQARNVDQVNALFKELHESILAPDIYT 123
            K+L +F +M  KG   C P ++TY+I++ + C  AR  D    L K + E  + PD   
Sbjct: 533 DKSLAFFSEMLDKG---CVPTVITYSIVIDKLCKSARVRDGC-MLLKTMLERGVTPDAIV 588

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  V+D   K+    E   +   MK   C P ++T+N+L+D   K    D+   + + + 
Sbjct: 589 YTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVME 648

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                P   T+NS+   + K+    KA  +FQ M +   +P+   Y  ++T     + + 
Sbjct: 649 SDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMD 708

Query: 244 RAREIFDELSKLGKDM 259
           +A EI++E  + G D+
Sbjct: 709 QAMEIWEEALEAGADV 724



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 127/307 (41%), Gaps = 15/307 (4%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +   R  + D   Y+ +I+   +  +   A  L   M  +GC PD   YN++++      
Sbjct: 401 LMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKAS 460

Query: 61  --DKAKALAKAL---GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 115
             D+A  + + L   GYF           ++VT + L+    ++R +D    L +E+  +
Sbjct: 461 QVDEAYEVYEVLRNGGYFL----------DVVTCSTLIDGLCKSRRLDDAEKLLREMERN 510

Query: 116 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 175
             APD+  Y  ++  + K   + +  +  S M    C P +IT++++ID   K       
Sbjct: 511 GSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDG 570

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
             + K+++     P    + S+I    K+    +A  +++ M      P+ +TY  ++  
Sbjct: 571 CMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDK 630

Query: 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
                 +  A  + + +   G      T N++ + +  +    +A  LF+   + G +P 
Sbjct: 631 LCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPT 690

Query: 296 SSTYKLL 302
              Y LL
Sbjct: 691 PFMYSLL 697



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 131/336 (38%), Gaps = 73/336 (21%)

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L KA+ +F    G    K +  T N LL A  + +   +   LFK     + +PD  TY+
Sbjct: 112 LDKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYS 171

Query: 126 GVMDAYGK--------------------------NGMIK------EMESVLSRMKSNQ-- 151
            +++ + K                          N +IK       ++S L   +  Q  
Sbjct: 172 TLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRN 231

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
           C P +IT+ +L+D+  K         + + ++ +   P + T+N++I  + K     +A 
Sbjct: 232 CAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAV 291

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYC------DNVSRARE---------------IFD 250
            +F +M     +P   TY  +I   GYC      D     +E               + D
Sbjct: 292 VLFNQMLENSCSPDVFTYNILID--GYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMD 349

Query: 251 ELSKLGK--------------DMKVS--TLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
            L K GK              D K S  T N M++ +C  G    A  LF+   + G  P
Sbjct: 350 SLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLP 409

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           D  TY ++     +AN  +  ++LL+RM + G  P+
Sbjct: 410 DIYTYNIMISGACRANRIDDARQLLERMTEAGCPPD 445



 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 240 DNVSRAREIFDELS-KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV-TPDSS 297
           D++ +A + FD  + + G      T N +L A+       EA  LF+N H  G+ +PDS 
Sbjct: 110 DDLDKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKN-HRCGLCSPDSI 168

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           TY  L   + KA   +   +LL  ME+ GIVP+   +
Sbjct: 169 TYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVY 205


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 158/357 (44%), Gaps = 30/357 (8%)

Query: 8    IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA-- 65
            + DT +Y+ L+    K+G  R A   F EM +    PD   Y A+I+      D  +A  
Sbjct: 771  LPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGK 830

Query: 66   -----LAKAL------------GY---------FQKMKGMER--CKPNIVTYNILLRACA 97
                 L + L            GY         F+    M +  C PN+VTY  L+    
Sbjct: 831  LFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC 890

Query: 98   QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
            +  ++D  N L  E+ +  L P+I+TYN +++   K+G I+E   ++   ++     D +
Sbjct: 891  KEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTV 950

Query: 158  TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
            T+  L+D+Y K    DK +++   ++    +PT+ TFN ++  +    +    E +   M
Sbjct: 951  TYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 1010

Query: 218  TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
             A    P+  T+ C++  Y   +N+  A  I+ ++   G +    T   +++ +C     
Sbjct: 1011 LAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNM 1070

Query: 278  TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
             EA  LF+     G +   STY +L K + K       +++  +M ++G+  +K  F
Sbjct: 1071 KEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIF 1127



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 149/330 (45%), Gaps = 5/330 (1%)

Query: 3    KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
            KQ+    ++  Y  +I ++ +  +   A   FSEM   G  PD  VY  L+      R  
Sbjct: 731  KQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCK-RGD 789

Query: 63   AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
             +A +K   +F +M   +   P+++TY  ++    Q  ++ +   LF E+    L PDI 
Sbjct: 790  IRAASK---FFYEMHSRD-ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDII 845

Query: 123  TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            T+  +M+ Y K G IK+   V + M    C P+++T+  LID   K    D   ++   +
Sbjct: 846  TFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM 905

Query: 183  MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 +P + T+NS++    K+    +A  +  +  A       +TY  ++  Y     +
Sbjct: 906  WKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEM 965

Query: 243  SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             +A+EI  E+   G    + T N ++  +C++G+  + + L       G+ P+++T+  L
Sbjct: 966  DKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCL 1025

Query: 303  YKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             K Y   N  +    + K M   G+ P+ +
Sbjct: 1026 VKQYCIRNNLKAATAIYKDMCSRGVEPDGK 1055



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 137/342 (40%), Gaps = 46/342 (13%)

Query: 26  QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85
           +T  A+ +F E    G   + + YN +I  H   +      A  L    ++KG     P+
Sbjct: 649 KTATAIIVFREFPEVGVCWNVASYNIVI--HFVCQLGRINEAHHLLLLMELKGY---TPD 703

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           +++Y+ ++    +   +D+V  L +++ +  L P+ YTY  ++    +   + E E   S
Sbjct: 704 VISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFS 763

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE------------------ 187
            M      PD I +  L+D + KR       + F   MHS++                  
Sbjct: 764 EMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYE-MHSRDITPDVLTYTAIISGFCQI 822

Query: 188 ------------------KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
                             +P + TF  ++  Y KA     A  V   M     +P+ +TY
Sbjct: 823 GDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTY 882

Query: 230 ECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
             +I   G C   ++  A E+  E+ K+G    + T N+++   C +G   EA  L    
Sbjct: 883 TTLID--GLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 940

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
              G+  D+ TY  L  AY K+   +  Q++L  M   G+ P
Sbjct: 941 EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQP 982



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 140/322 (43%), Gaps = 4/322 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           +D  ++     V+ + G    A  +F +M N G        N  + A L ++D  K  A 
Sbjct: 596 SDPRVFDVFFQVLVEFGMLPEARKVFEKMLNYGLVLSVDSCNVYL-ARL-SKDCNKT-AT 652

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A+  F++   +  C  N+ +YNI++    Q   +++ + L   +      PD+ +Y+ V+
Sbjct: 653 AIIVFREFPEVGVCW-NVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVI 711

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + Y + G + ++  ++ +MK    KP+  T+  +I    +     + E+ F  ++     
Sbjct: 712 NGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGIL 771

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P    + +++  + K      A   F +M +   TP  +TY  II+ +    ++  A ++
Sbjct: 772 PDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKL 831

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F E+   G +  + T   ++  YC  G   +A  +  +    G +P+  TY  L     K
Sbjct: 832 FHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCK 891

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
               +   +LL  M + G+ PN
Sbjct: 892 EGDLDSANELLHEMWKIGLQPN 913


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 154/329 (46%), Gaps = 9/329 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  +  IY+ +I  + K  Q   A+ L + M   G  PD   YN+LI+  L +  +    
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISG-LCSSGRWSDA 240

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            + +    K        P++ T+N L+ AC +   V +    ++E+    L PDI TY+ 
Sbjct: 241 TRMVSCMTK----REIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSL 296

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++        + E E +   M S  C PD++T+++LI+ Y K +  +   ++F  +    
Sbjct: 297 LIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRG 356

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
                 T+  +I  Y +A     AE +F++M      P+ ITY   + ++G CDN  + +
Sbjct: 357 VVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYN--VLLHGLCDNGKIEK 414

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  I  ++ K G D  + T N ++   C  G   +A  ++ + +  G+ PD  TY  +  
Sbjct: 415 ALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMML 474

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRF 333
              K  ++     L ++M+++GI+PN+ +
Sbjct: 475 GLYKKGLRREADALFRKMKEDGILPNECY 503



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 137/313 (43%), Gaps = 9/313 (2%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           L+    +  Q  LA+    +M   G  P    + +L+        +   +  AL  F +M
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFC----RGDRVYDALYMFDQM 177

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
            GM   KPN+V YN ++    +++ VD    L   + +  + PD+ TYN ++     +G 
Sbjct: 178 VGMGY-KPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGR 236

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
             +   ++S M   +  PD+ TFN LID+  K     + E+ ++ ++     P + T++ 
Sbjct: 237 WSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSL 296

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSK 254
           +I          +AE +F  M +    P  +TY  +I   GYC +  V    ++F E+S+
Sbjct: 297 LIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILIN--GYCKSKKVEHGMKLFCEMSQ 354

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
            G      T   +++ YC  G    A+ +F      GV P+  TY +L          E 
Sbjct: 355 RGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEK 414

Query: 315 VQKLLKRMEQNGI 327
              +L  M++NG+
Sbjct: 415 ALVILADMQKNGM 427



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 146/325 (44%), Gaps = 12/325 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           IAD   +S+L++ + K  +  + ++L+ +M+  G   +    N L+        +   L+
Sbjct: 81  IAD---FSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFC----RCSQLS 133

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            AL +  KM  +   +P+IVT+  LL    +   V     +F ++      P++  YN +
Sbjct: 134 LALSFLGKMIKLGH-EPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTI 192

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D   K+  +     +L+RM+ +   PD++T+N LI        +    ++   +   + 
Sbjct: 193 IDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREI 252

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRA 245
            P + TFN++I    K     +AE  +++M      P  +TY  +I  YG C    +  A
Sbjct: 253 YPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLI--YGLCMYSRLDEA 310

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            E+F  +   G    V T + ++  YC +        LF      GV  ++ TY +L + 
Sbjct: 311 EEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQG 370

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
           Y +A    + +++ +RM   G+ PN
Sbjct: 371 YCRAGKLNVAEEIFRRMVFCGVHPN 395



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 119/291 (40%), Gaps = 41/291 (14%)

Query: 79  MERCKP--NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           M +C+P  +I  ++ LL A ++ +  D V  L++++    +  ++ T N +++ + +   
Sbjct: 72  MVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQ 131

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           +    S L +M     +P I+TF  L++ + +         +F  ++    KP +  +N+
Sbjct: 132 LSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNT 191

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--------------- 241
           +I    K++    A  +  +M      P  +TY  +I+  G C +               
Sbjct: 192 IIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLIS--GLCSSGRWSDATRMVSCMTK 249

Query: 242 ----------------------VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
                                 VS A E ++E+ +   D  + T + ++   CM     E
Sbjct: 250 REIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDE 309

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           A+ +F    + G  PD  TY +L   Y K+   E   KL   M Q G+V N
Sbjct: 310 AEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRN 360



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 10/231 (4%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA-HLHT 59
           M K+  Y  D   ++ LI    K+G+   A   + EM      PD   Y+ LI    +++
Sbjct: 247 MTKREIY-PDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYS 305

Query: 60  R-DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
           R D+A+ +      F   KG   C P++VTY+IL+    +++ V+    LF E+ +  + 
Sbjct: 306 RLDEAEEMFG----FMVSKG---CFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVV 358

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
            +  TY  ++  Y + G +   E +  RM      P+IIT+N+L+         +K   +
Sbjct: 359 RNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVI 418

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
              +  +     + T+N +I    KA     A  ++  +      P   TY
Sbjct: 419 LADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTY 469



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 84/192 (43%), Gaps = 7/192 (3%)

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
            D    +F  ++  +  P++  F+ ++    K +      Y++++M  +    +  T   
Sbjct: 62  LDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           ++  +  C  +S A     ++ KLG +  + T  ++L  +C      +A  +F+    MG
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMG 181

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSG 351
             P+   Y  +     K+   +    LL RME++GI P+       + T++S ++G  S 
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPD-------VVTYNSLISGLCSS 234

Query: 352 SAKTDLTRSLST 363
              +D TR +S 
Sbjct: 235 GRWSDATRMVSC 246


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 154/330 (46%), Gaps = 9/330 (2%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S L+  + K G+  +A  +   + N+G  P   +YN LI  +  T +    L  A   F 
Sbjct: 207 SILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGE----LEGAFSTFG 262

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +MK     KP+ +TYN L+    +A  +     L  E+ ++ + P + T+N ++DAYG+ 
Sbjct: 263 QMKS-RHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRT 321

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G +++   VLS M+ N  KP+++++  +++++ K     +   +   + H    P    +
Sbjct: 322 GQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVY 381

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDEL 252
           N++I  Y +     +A  + +KM +   +PS +TY  +I   G C+   +S A EI + L
Sbjct: 382 NAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIK--GLCNQSQISEAEEIINSL 439

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           S         + N ++ A C  G   +A  L +  H  G+     TY  L      A   
Sbjct: 440 SNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRL 499

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
             ++ L ++M QN +VP+       +E +S
Sbjct: 500 NEMEYLYQKMMQNNVVPSNAIHNIMVEAYS 529



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 149/332 (44%), Gaps = 13/332 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +IA M + G+   A+ +F EM      P+   YN +I  H+   D            
Sbjct: 66  YNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGF------- 118

Query: 74  QKMKGMERC---KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
            +++    C   KPN +TYN+LL    +A  + + +AL  E+    + PD +TY+ + D 
Sbjct: 119 -RLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDG 177

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             +NG  K M S+  +   N       T ++L++   K       E+V +SL+++   PT
Sbjct: 178 LSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPT 237

Query: 191 LPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              +N++I  Y +   L+G A   F +M +    P  ITY  +I      + ++ A+++ 
Sbjct: 238 RVIYNTLINGYCQTGELEG-AFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLL 296

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+   G +  V T N +++AY   G   +  ++       G+ P+  +Y  +  A+ K 
Sbjct: 297 MEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKN 356

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
                   +L  M    ++PN + +   ++ +
Sbjct: 357 GKIPEAVAILDDMFHKDVLPNAQVYNAIIDAY 388



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 144/312 (46%), Gaps = 5/312 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ LI    + G+   A   F +M++   +PD   YNALI        KA+ +  A   
Sbjct: 240 IYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLC----KAERITNAQDL 295

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +M+      P + T+N L+ A  +   +++   +  E+ E+ L P++ +Y  +++A+ 
Sbjct: 296 LMEMQD-NGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFC 354

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           KNG I E  ++L  M      P+   +N +ID+Y +    D+   + + +  +   P++ 
Sbjct: 355 KNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIV 414

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N +I          +AE +   ++  +  P  ++Y  +I+   Y  N+ +A ++   +
Sbjct: 415 TYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRM 474

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            K G    V T + ++      G   E + L++      V P ++ + ++ +AY+K   +
Sbjct: 475 HKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNE 534

Query: 313 ELVQKLLKRMEQ 324
              + L K M Q
Sbjct: 535 IKAEDLRKEMLQ 546



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 138/319 (43%), Gaps = 9/319 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L++ + + G+      L  EM +    PD   Y+ L    L     +KA+    G +
Sbjct: 136 YNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDG-LSRNGDSKAMLSLFGKY 194

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K            T +ILL    +   V     + + L  + L P    YN +++ Y +
Sbjct: 195 LK----NGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQ 250

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++   S   +MKS   KPD IT+N LI+   K +     + +   +  +   PT+ T
Sbjct: 251 TGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVET 310

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           FN++I  YG+     K   V  +M      P+ ++Y  I+  +     +  A  I D++ 
Sbjct: 311 FNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDM- 369

Query: 254 KLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
              KD+       NA+++AY  +G   +A +L E   + G++P   TY LL K     + 
Sbjct: 370 -FHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQ 428

Query: 312 KELVQKLLKRMEQNGIVPN 330
               ++++  +  + ++P+
Sbjct: 429 ISEAEEIINSLSNHRLIPD 447



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 136/329 (41%), Gaps = 17/329 (5%)

Query: 21  MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME 80
           +G+    R A   F  + ++G RPD   +N  + A +   D    L +A+G  ++M    
Sbjct: 5   LGRHADVRRA---FGILASAGARPDTFAWNKAVQACVAAGD----LGEAVGMLRRMGRDG 57

Query: 81  RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140
              PN  +YN+++    +A        +F E+ E  + P+  TYN ++D + K G ++  
Sbjct: 58  APPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAG 117

Query: 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
             +  +M  +  KP+ IT+N+L+    +     +   +   +   K  P    F   I+ 
Sbjct: 118 FRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPD--GFTYSILF 175

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFIT---YECIITMYGYCDN--VSRAREIFDELSKL 255
            G +R  G ++ +       KY  + +T   Y C I + G C +  VS A E+   L   
Sbjct: 176 DGLSR-NGDSKAMLSLFG--KYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNA 232

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
           G        N ++  YC  G    A   F    +  + PD  TY  L     KA      
Sbjct: 233 GLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNA 292

Query: 316 QKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           Q LL  M+ NG+ P    F   ++ +  +
Sbjct: 293 QDLLMEMQDNGVNPTVETFNTLIDAYGRT 321



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 9/176 (5%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKAL 70
           +Y+ +I    + G    A  L  +M+++G  P    YN LI    +     +A+ +  +L
Sbjct: 380 VYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSL 439

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
                     R  P+ V+YN L+ AC    N+D+   L + +H+  +   + TY+ ++  
Sbjct: 440 SN-------HRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISG 492

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
            G  G + EME +  +M  N   P     N+++++Y K     K E + K ++  +
Sbjct: 493 LGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKR 548


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 147/319 (46%), Gaps = 6/319 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ L+A++ K      A+ LF EMR+  CRPD   Y  LI        KA  L +A  +
Sbjct: 263 IYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRG----LGKAGRLDEAYNF 318

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA-Y 131
           F +M+  E C+P+ V  N ++    +A  +D    LF+E+      P + TYN ++ A +
Sbjct: 319 FHEMR-REGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALF 377

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
                + E+ S   RMK +   P   T+++LID + K    +K   + + +      P  
Sbjct: 378 ESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCP 437

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             + S+I   GKA+    A  +FQ++     + S   Y  +I   G    +  A ++FDE
Sbjct: 438 AAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDE 497

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +++LG    V   NA++      G+  EA        + G  PD ++Y ++  A  K   
Sbjct: 498 MNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGG 557

Query: 312 KELVQKLLKRMEQNGIVPN 330
            +    +L  M+Q+ I P+
Sbjct: 558 PDRAMGMLCNMKQSAIKPD 576



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 150/322 (46%), Gaps = 6/322 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  YS LI+   K G+   A+WL +EM+++G +P   +Y  L+ A L   D       A
Sbjct: 225 DTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLM-ALLFKLDNVHG---A 280

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           LG F++M+  + C+P++ TY  L+R   +A  +D+    F E+      PD    N +++
Sbjct: 281 LGLFEEMRH-QYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMIN 339

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS-YGKRQAFDKMEQVFKSLMHSKEK 188
             GK G + +   +   M++ +C P ++T+N +I + +  +    ++   F+ +  S   
Sbjct: 340 FLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGIS 399

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P+  T++ +I  + K     KA  + ++M    + P    Y  +I   G       A E+
Sbjct: 400 PSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANEL 459

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F EL +            M++     G   +A  LF+  + +G TP+   Y  L     +
Sbjct: 460 FQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLAR 519

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
           A M +     ++RM+ +G +P+
Sbjct: 520 AGMLDEALTTMRRMQDHGCIPD 541



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 152/318 (47%), Gaps = 6/318 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y++LI  +GK G+   A   F EMR  GCRPD  + N +I    +   KA  L  A
Sbjct: 295 DVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMI----NFLGKAGRLDDA 350

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARN-VDQVNALFKELHESILAPDIYTYNGVM 128
           +  F++M+ + RC P++VTYN +++A  ++++ V ++++ F+ +  S ++P  +TY+ ++
Sbjct: 351 IKLFEEMETL-RCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILI 409

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D + K    ++   +L  M      P    +  LID+ GK + +D   ++F+ L  +   
Sbjct: 410 DGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKENCGS 469

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
            +   +  MI + GKA     A  +F +M  +  TP+   Y  +++       +  A   
Sbjct: 470 SSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTT 529

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
              +   G    +++ N +L A    G P  A  +  N     + PD+ +Y  +  A + 
Sbjct: 530 MRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGALSH 589

Query: 309 ANMKELVQKLLKRMEQNG 326
           A M E   KL+K M   G
Sbjct: 590 AGMFEEAAKLMKEMNAIG 607



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 132/312 (42%), Gaps = 5/312 (1%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S +I ++G       A+ +F +++   C+P    YN++I   +H  +  K        + 
Sbjct: 159 SDIIRMLGNAKMISKAVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHE----LYN 214

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M    +C P+ VTY+ L+ A  +    D    L  E+ ++ + P    Y  +M    K 
Sbjct: 215 EMSNEGQCFPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKL 274

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
             +     +   M+   C+PD+ T+  LI   GK    D+    F  +     +P     
Sbjct: 275 DNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLM 334

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII-TMYGYCDNVSRAREIFDELS 253
           N+MI   GKA     A  +F++M  ++  PS +TY  II  ++     VS     F+ + 
Sbjct: 335 NNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMK 394

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G      T + +++ +C      +A +L E     G  P  + Y  L  A  KA   +
Sbjct: 395 GSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYD 454

Query: 314 LVQKLLKRMEQN 325
           L  +L + +++N
Sbjct: 455 LANELFQELKEN 466



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 111/228 (48%), Gaps = 7/228 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI    K  +T  AM L  EM   G  P P+ Y +LI A      KAK    A   F
Sbjct: 405 YSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDA----LGKAKRYDLANELF 460

Query: 74  QKMKGMERCKPNIV-TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           Q++K  E C  +    Y ++++   +A  +D    LF E++     P++Y YN +M    
Sbjct: 461 QELK--ENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLA 518

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + GM+ E  + + RM+ + C PDI ++N+++++  K    D+   +  ++  S  KP   
Sbjct: 519 RAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAV 578

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           ++N+++     A +  +A  + ++M A+ +    ITY  I+   G  D
Sbjct: 579 SYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLITYSSILEAIGKVD 626



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 12/250 (4%)

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYT----YNGVMDAYGKNGMIKEMESV 143
           TY  L+R C +   V+Q   ++K + E +  P         + ++   G   MI +  ++
Sbjct: 121 TYMALIR-CLEV--VEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAI 177

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP---TFNSMIIN 200
             ++K+ +C+P    +N +I        ++K+ +++  +  S E    P   T++++I  
Sbjct: 178 FYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEM--SNEGQCFPDTVTYSALISA 235

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
           + K   Q  A ++  +M      P+   Y  ++ +    DNV  A  +F+E+        
Sbjct: 236 FCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPD 295

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           V T   ++      G   EA   F      G  PD+     +     KA   +   KL +
Sbjct: 296 VFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFE 355

Query: 321 RMEQNGIVPN 330
            ME    +P+
Sbjct: 356 EMETLRCIPS 365



 Score = 38.1 bits (87), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 35/181 (19%)

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN-YGKARLQGKAEYV 213
           D  T+  LI      + + +M ++ + ++ +      P   S II   G A++  KA  +
Sbjct: 118 DTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAI 177

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F ++ A K  P+   Y  +I M  +     +  E+++E+S  G+              C 
Sbjct: 178 FYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQ--------------CF 223

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
                               PD+ TY  L  A+ K   ++    LL  M+ NG+ P  + 
Sbjct: 224 --------------------PDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKI 263

Query: 334 F 334
           +
Sbjct: 264 Y 264


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 158/350 (45%), Gaps = 11/350 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           ++ D   Y+ ++  + K G+   A+ LF+EM   GC P+   +N +I   L  + K   +
Sbjct: 111 HVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILG-LCQQSK---I 166

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            +A   F +M+  +   P+  +Y IL+   A+A  +++   LF+ + +S + P   TYN 
Sbjct: 167 DQACQVFHEMEARD-IPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNV 225

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           V+        + E   +   M+S  C+P   TFN+LID++ KR   D+  ++ K +    
Sbjct: 226 VIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDG 285

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSR 244
             P + T++++I           A ++ + M   +  P+ +T   +I  +G C    +  
Sbjct: 286 HVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLI--HGLCKAGRIKE 343

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           ARE+ D +   G+   V T N ++  +C  G    A  L  +    G+ P+  TY  L  
Sbjct: 344 AREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVS 403

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAK 354
              KAN       +  +M+ +G  PN   +   +  F S  AG   G  K
Sbjct: 404 GLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCS--AGQVDGGLK 451



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 142/332 (42%), Gaps = 32/332 (9%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHL-------------------HTRD--------- 61
           A  LF++M   GC P P  YN +I A                     H  D         
Sbjct: 64  ARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMD 123

Query: 62  ---KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
              K+  + +AL  F +M+ +  C PN  ++N ++    Q   +DQ   +F E+    + 
Sbjct: 124 GLCKSGRVEEALLLFNEMERLG-CTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIP 182

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD ++Y  ++D   K G + E   +  RM  +   P  +T+N++I         D+  ++
Sbjct: 183 PDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALEL 242

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           FKS+     +P+  TFN +I  + K     +A  + ++MT   + P  +TY  +I+    
Sbjct: 243 FKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCS 302

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              V  AR + +++ K      V T N ++   C  G   EA  + +   + G +PD  T
Sbjct: 303 IARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVT 362

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y  L   + +A   E  ++LL  M   G+ PN
Sbjct: 363 YNTLVHGHCRAGQTERARELLSDMVARGLAPN 394



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 138/311 (44%), Gaps = 5/311 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D+  Y  LI  + K G+   A  LF  M +SG  P    YN +I    H    A  L +A
Sbjct: 184 DSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVI----HGMCLAYTLDEA 239

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  F+ M+  + C+P+  T+NIL+ A  +   +D+   L K + +    PD+ TY+ ++ 
Sbjct: 240 LELFKSMRS-KGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLIS 298

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
                  + +   +L  M   QCKP ++T N LI    K     +  +V  +++ S + P
Sbjct: 299 GLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSP 358

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+N+++  + +A    +A  +   M A    P+ +TY  +++     + +  A  +F
Sbjct: 359 DVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVF 418

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            ++   G    + T  A++  +C  G       LF      G++PD   Y  L     K+
Sbjct: 419 AQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKS 478

Query: 310 NMKELVQKLLK 320
                  ++L+
Sbjct: 479 GRSARALEILR 489



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 148/331 (44%), Gaps = 13/331 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R    D+  Y  LI  + K G+   A  LF ++ +SG  P    Y +LI    H    A
Sbjct: 3   ERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLI----HGLCMA 58

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            +   A   F  M     C P+ VTYN+++ A  +   +++   L K++ E    PD+ T
Sbjct: 59  NSFDDARELFADMN-RRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVT 117

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN VMD   K+G ++E   + + M+   C P+  + N +I    ++   D+  QVF  + 
Sbjct: 118 YNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEME 177

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--N 241
                P   ++  +I    KA    +A  +F++M     TPS +TY  +I  +G C    
Sbjct: 178 ARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVI--HGMCLAYT 235

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +  A E+F  +   G      T N +++A+C  G   EA  L +   + G  PD  TY  
Sbjct: 236 LDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYST 295

Query: 302 LYKAYTKA----NMKELVQKLLKRMEQNGIV 328
           L           + + L++ ++KR  +  +V
Sbjct: 296 LISGLCSIARVDDARHLLEDMVKRQCKPTVV 326



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 140/320 (43%), Gaps = 17/320 (5%)

Query: 44  PDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARN 101
           PD   Y  LI        KA  L  A   FQK+   G+    P+ V Y  L+     A +
Sbjct: 8   PDSWSYGILIDGLA----KAGKLNDARDLFQKLLHSGV---TPSTVAYTSLIHGLCMANS 60

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
            D    LF +++     P   TYN ++DA  K GM++E   ++ +M  +   PD++T+N 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           ++D   K    ++   +F  +      P   + N++I+   +     +A  VF +M A  
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
             P   +Y  +I        ++ A ++F  +   G      T N ++   C+     EA 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            LF++  + G  P   T+ +L  A+ K    +   +LLKRM  +G VP+       + T+
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPD-------VVTY 293

Query: 342 SSSLAGSQSGSAKTDLTRSL 361
           S+ ++G  S  A+ D  R L
Sbjct: 294 STLISGLCS-IARVDDARHL 312



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 30/252 (11%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAK----------ALGYFQKMK 77
           A+ LF  MR+ GCRP    +N LI AH      D+A  L K           + Y   + 
Sbjct: 239 ALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLIS 298

Query: 78  GM------------------ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
           G+                   +CKP +VT N L+    +A  + +   +   +  S  +P
Sbjct: 299 GLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSP 358

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D+ TYN ++  + + G  +    +LS M +    P+++T+  L+    K     +   VF
Sbjct: 359 DVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVF 418

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             +  S   P L T+ ++I+ +  A        +F +M     +P  + Y  +       
Sbjct: 419 AQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKS 478

Query: 240 DNVSRAREIFDE 251
              +RA EI  E
Sbjct: 479 GRSARALEILRE 490


>gi|42570403|ref|NP_850357.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330254930|gb|AEC10024.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 683

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 164/373 (43%), Gaps = 32/373 (8%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH---- 56
           M+ Q+ Y A   IY+ +I +  +      A  LF EM+   C+PD   Y+ALI AH    
Sbjct: 1   MKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAG 60

Query: 57  -----------------LHTRDKAKALAKALGYFQKMK-GMERCK--------PNIVTYN 90
                              +R     L  A G     +  +E CK        P++VT+N
Sbjct: 61  QWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHN 120

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM--K 148
           I+L A    R   +  + F+ +  + + PD  T+N ++    K G   +   + + M  K
Sbjct: 121 IVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREK 180

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
             +C+PD++TF  ++  Y  +   +    VF++++    KP + ++N+++  Y    + G
Sbjct: 181 RAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSG 240

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A  V   +      P  ++Y C++  YG      +A+E+F  + K  +   V T NA++
Sbjct: 241 TALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALI 300

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           +AY  NG   EA  +F      G+ P+  +   L  A +++  K  V  +L   +  GI 
Sbjct: 301 DAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGIN 360

Query: 329 PNKRFFLEALETF 341
            N   +  A+ ++
Sbjct: 361 LNTAAYNSAIGSY 373



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 165/362 (45%), Gaps = 50/362 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRN--SGCRPDPSVYNALITAHLHTRDKAKALA 67
           DT  ++ +I  + K GQ+  A+ LF+ MR   + CRPD   + +++  HL++        
Sbjct: 150 DTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIM--HLYSVKGEIENC 207

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A+  F+ M   E  KPNIV+YN L+ A A         ++  ++ ++ + PD+ +Y  +
Sbjct: 208 RAV--FEAMVA-EGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCL 264

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-------QAFDKMEQ--- 177
           +++YG++    + + V   M+  + KP+++T+N LID+YG         + F +MEQ   
Sbjct: 265 LNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGI 324

Query: 178 ---------VFKSLMHSKEKPTLPT----------------FNSMIINYGKARLQGKAEY 212
                    +  +   SK+K  + T                +NS I +Y  A    KA  
Sbjct: 325 KPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIA 384

Query: 213 VFQKMTAMKYTPSFITYECIIT----MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           ++Q M   K     +T+  +I+    M  Y + +S  +E+ D    L K++  S L    
Sbjct: 385 LYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLC--- 441

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
            AY   G  TEA+ +F      G  PD   Y  +  AY  +       +L   ME NGI 
Sbjct: 442 -AYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIE 500

Query: 329 PN 330
           P+
Sbjct: 501 PD 502



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 124/275 (45%), Gaps = 6/275 (2%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C  N + YN+++R  A+   VDQ   LF E+ +    PD  TY+ +++A+G+ G  +   
Sbjct: 8   CARNDI-YNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAM 66

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           +++  M      P   T+N LI++ G    + +  +V K +  +   P L T N ++  Y
Sbjct: 67  NLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAY 126

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK- 260
              R   KA   F+ M   K  P   T+  II         S+A ++F+ + +   + + 
Sbjct: 127 KSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRP 186

Query: 261 -VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            V T  +++  Y + G       +FE     G+ P+  +Y  L  AY    M      +L
Sbjct: 187 DVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVL 246

Query: 320 KRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAK 354
             ++QNGI+P+   +   L ++  S    Q G AK
Sbjct: 247 GDIKQNGIIPDVVSYTCLLNSYGRS---RQPGKAK 278



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 125/283 (44%), Gaps = 5/283 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ   I D   Y+ L+   G+  Q   A  +F  MR    +P+   YNALI A+      
Sbjct: 250 KQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAY----GS 305

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              LA+A+  F++M+  +  KPN+V+   LL AC++++    V+ +        +  +  
Sbjct: 306 NGFLAEAVEIFRQME-QDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTA 364

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            YN  + +Y     +++  ++   M+  + K D +TF +LI    +   + +     K +
Sbjct: 365 AYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEM 424

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                  T   ++S++  Y K     +AE +F +M      P  I Y  ++  Y   +  
Sbjct: 425 EDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKW 484

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
            +A E+F E+   G +      +A++ A+   G P+   +L +
Sbjct: 485 GKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMD 527


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 161/331 (48%), Gaps = 7/331 (2%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R Y  D   Y+ +I  + K G+T  A  LF +M  +GC+PD   Y+ +I +      K +
Sbjct: 221 RGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLC----KDR 276

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            + +AL  F  MK  +   PNI TYN L++         + +A+  E+    + P+I T+
Sbjct: 277 RVNEALDIFSYMKA-KGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTF 335

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           + +++ + K G + E   VL  M     +P+++T++ L++ Y  +    +  ++F  ++ 
Sbjct: 336 SLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMIT 395

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
              KP + ++N +I  Y KA+  G+A+ +F +M     TP  ++Y  +I        +  
Sbjct: 396 KGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLRE 455

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A ++F  +   G    + T + +L+ +C  G   +A  LF    +  + P+   Y +L  
Sbjct: 456 AHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILID 515

Query: 305 AYTKA-NMKELVQKLLKRMEQNGIVPNKRFF 334
           A  K+ N+KE  +KL   +   G+ PN + +
Sbjct: 516 AMCKSRNLKE-ARKLFSELFVQGLQPNVQIY 545



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 148/317 (46%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI  + K G+   A+ LF +M   G +PD   Y  +I        K      A G F
Sbjct: 195 FNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLC----KIGETVAAAGLF 250

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KM G   C+P++VTY+ ++ +  + R V++   +F  +    ++P+I+TYN ++     
Sbjct: 251 RKM-GEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCN 309

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
               +E  ++L+ M S    P+I+TF+LLI+ + K     +   V K++     +P + T
Sbjct: 310 FSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVT 369

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           ++S++  Y       +A  +F  M      P   +Y  +I  Y     +  A+++F+E+ 
Sbjct: 370 YSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMI 429

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    + + N +++  C  G   EA  LF+N    G  PD  TY +L   + K     
Sbjct: 430 HQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLA 489

Query: 314 LVQKLLKRMEQNGIVPN 330
              +L + M+   + PN
Sbjct: 490 KAFRLFRAMQSTYLKPN 506



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 147/352 (41%), Gaps = 32/352 (9%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA-- 67
           D   YS +I  + K  +   A+ +FS M+  G  P+   YN+LI    +     +A A  
Sbjct: 261 DVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAML 320

Query: 68  -----------------------------KALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
                                        +A G  + M  M   +PN+VTY+ L+   + 
Sbjct: 321 NEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMG-VEPNVVTYSSLMNGYSL 379

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
              V +   LF  +      PD+++YN +++ Y K   I E + + + M      PDI++
Sbjct: 380 QAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVS 439

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +N LID   +     +   +FK+++ +   P L T++ ++  + K     KA  +F+ M 
Sbjct: 440 YNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQ 499

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           +    P+ + Y  +I       N+  AR++F EL   G    V     ++   C  GL  
Sbjct: 500 STYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLD 559

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           EA   F N    G  P+  +Y ++ + + +   +    +L+  M + G V +
Sbjct: 560 EALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGFVAD 611



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 121/252 (48%), Gaps = 9/252 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L+     + +   A  LF  M   GC+PD   YN LI  +     KAK + +A   F
Sbjct: 370 YSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYC----KAKRIGEAKQLF 425

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  +G+    P+IV+YN L+    Q   + + + LFK +  +   PD+ TY+ ++D +
Sbjct: 426 NEMIHQGL---TPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGF 482

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G + +   +   M+S   KP+++ +N+LID+  K +   +  ++F  L     +P +
Sbjct: 483 CKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNV 542

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             + ++I    K  L  +A   F+ M      P+  +Y  II  +    + SRA ++  E
Sbjct: 543 QIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGE 602

Query: 252 LSKLGKDMKVST 263
           + + G    V+T
Sbjct: 603 MREKGFVADVAT 614



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 134/293 (45%), Gaps = 9/293 (3%)

Query: 56  HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV-DQVNALFKELHE 114
           H +     + +  AL YF  M    + +P I+ +N LL A  + R+  D V +L K++  
Sbjct: 92  HQNDASSFRNIDDALAYFNHML-HRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMEL 150

Query: 115 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
           + L+PD YT + +++ + +   +    SVL+++     +  I+TFN LI+   K   F +
Sbjct: 151 AGLSPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQ 210

Query: 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
             ++F  ++    +P + T+ ++I    K      A  +F+KM      P  +TY  II 
Sbjct: 211 AVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIID 270

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
                  V+ A +IF  +   G    + T N++++  C      EA  +     ++ + P
Sbjct: 271 SLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMP 330

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
           +  T+ LL   + K       + +LK M + G+ PN       + T+SS + G
Sbjct: 331 NIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPN-------VVTYSSLMNG 376


>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
 gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
 gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
          Length = 410

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 142/323 (43%), Gaps = 9/323 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D    + L+ V  + G    A  +F  M   G  P+   Y ALI  +     +    A  
Sbjct: 37  DVAACTALVHVCCQSGDVAEARRVFDVMPRLGVAPNEVTYTALINGYFVRGHREMGFA-- 94

Query: 70  LGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F +M+  G+E   PN+ TYN L+    +         LF E+    +  ++ +YN +
Sbjct: 95  --LFAEMRRDGVE---PNLYTYNCLIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNIL 149

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +    ++  +K+   +   M+    +P I+TFNLLID YGK          F  +  +  
Sbjct: 150 IAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGL 209

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P++ T+N +I  + + R   +A   F  M      P+ +TY  +I  +   + + RA  
Sbjct: 210 PPSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFM 269

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +  E+ K G ++ V +   +L A CM G    A  LF++    GV P+S  Y ++   Y 
Sbjct: 270 MLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVKPNSVLYDMMIYGYG 329

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           +        +L+  M +NG++PN
Sbjct: 330 REGSSYKALRLIMEMRKNGLIPN 352



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 133/332 (40%), Gaps = 44/332 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI     +G   +   LF+EMR  G  P+   YN LI     T +       A   F
Sbjct: 76  YTALINGYFVRGHREMGFALFAEMRRDGVEPNLYTYNCLIGEWCRTGE----FKSARLLF 131

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  KG+     N+V+YNIL+    +   +     LF+ +    + P I T+N ++D Y
Sbjct: 132 DEMPVKGVVH---NVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGY 188

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           GK G +       ++MK+    P ++T+N LI  + + +   +  + F  +      PT 
Sbjct: 189 GKAGKMANALHFFNQMKAAGLPPSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTK 248

Query: 192 PTFNSMIINYGKAR--------------------------------LQGK---AEYVFQK 216
            T+  +I  + K                                  ++GK   A  +FQ 
Sbjct: 249 VTYTILIAAFAKENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQS 308

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M      P+ + Y+ +I  YG   +  +A  +  E+ K G    V++    +   C  G 
Sbjct: 309 MDLKGVKPNSVLYDMMIYGYGREGSSYKALRLIMEMRKNGLIPNVASYCLTIRLLCNEGK 368

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             EA+ L ++  + G+    +  ++L  A  +
Sbjct: 369 CQEAEALIDDMEHAGLQTSETICRILLDAKAR 400



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/258 (19%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           T  ++ R C  A     +  L +       A D+     ++    ++G + E   V   M
Sbjct: 5   TAAVVRRLCVAAEVRSALAVLARGTKSGDAALDVAACTALVHVCCQSGDVAEARRVFDVM 64

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
                 P+ +T+  LI+ Y  R   +    +F  +     +P L T+N +I  + +    
Sbjct: 65  PRLGVAPNEVTYTALINGYFVRGHREMGFALFAEMRRDGVEPNLYTYNCLIGEWCRTGEF 124

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLN 265
             A  +F +M       + ++Y  +I   G C +  +  A ++F+ + + G    + T N
Sbjct: 125 KSARLLFDEMPVKGVVHNVVSYNILIA--GLCRHSKLKDAVQLFEAMRREGIRPSIVTFN 182

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA-NMKELVQKLLKRMEQ 324
            +++ Y   G    A   F      G+ P   TY  L   + +  ++   V+  L  M++
Sbjct: 183 LLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNELICGFCRVRDIARAVRAFLD-MKE 241

Query: 325 NGIVPNKRFFLEALETFS 342
            G+ P K  +   +  F+
Sbjct: 242 RGLAPTKVTYTILIAAFA 259



 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 5/163 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+R        Y+ LIA   K+ +   A  + SEM  +G   D   Y  L    LH    
Sbjct: 240 KERGLAPTKVTYTILIAAFAKENEMDRAFMMLSEMEKAGLEVDVQSYGVL----LHALCM 295

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              +  A   FQ M  ++  KPN V Y++++    +  +  +   L  E+ ++ L P++ 
Sbjct: 296 EGKMMHARKLFQSMD-LKGVKPNSVLYDMMIYGYGREGSSYKALRLIMEMRKNGLIPNVA 354

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
           +Y   +      G  +E E+++  M+    +       +L+D+
Sbjct: 355 SYCLTIRLLCNEGKCQEAEALIDDMEHAGLQTSETICRILLDA 397


>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 642

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 148/318 (46%), Gaps = 6/318 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  YS LI+   K G+   A+ LF EM+++  +P   +Y  L+  +     K   + KA
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYF----KVGKVEKA 287

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  F++MK    C P + TY  L++   +A  V++   L+K +    L PD+   N +M+
Sbjct: 288 LDLFEEMK-RAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMN 346

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS-YGKRQAFDKMEQVFKSLMHSKEK 188
             GK G ++E+ +V + M + +C P ++++N +I + +  +    ++   F  +      
Sbjct: 347 ILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVS 406

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P+  T++ +I  Y K     KA  + ++M    + P    Y  +I   G       A E+
Sbjct: 407 PSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANEL 466

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F EL +   ++       M++ +   G  +EA  LF    N G  PD   Y  L     K
Sbjct: 467 FKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVK 526

Query: 309 ANMKELVQKLLKRMEQNG 326
           A M      LL++ME+NG
Sbjct: 527 AGMVNEANSLLRKMEENG 544



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 136/314 (43%), Gaps = 5/314 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           + S+L+  +G+      A+ +F + +   C+P  S YN++I   +      K        
Sbjct: 164 VLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHE----V 219

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           + +M     C P+ +TY+ L+ +  +    D    LF E+ ++ + P    Y  ++  Y 
Sbjct: 220 YTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYF 279

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G +++   +   MK   C P + T+  LI   GK    ++   ++K+++     P + 
Sbjct: 280 KVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVV 339

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII-TMYGYCDNVSRAREIFDE 251
             N+++   GK     +   VF +M   + TP+ ++Y  +I  ++     VS     FD+
Sbjct: 340 FLNNLMNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDK 399

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G      T + +++ YC      +A LL E     G  P  + Y  L  A  KA  
Sbjct: 400 MKADGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKR 459

Query: 312 KELVQKLLKRMEQN 325
            E   +L K +++N
Sbjct: 460 YEAANELFKELKEN 473



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 109/230 (47%), Gaps = 9/230 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI    K  +   A+ L  EM   G  P P+ Y +LI A      KAK    A   F
Sbjct: 412 YSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINA----LGKAKRYEAANELF 467

Query: 74  QKMKGMERCKPNIVT--YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           +++K       N+ +  Y ++++   +   + +   LF E+      PD+Y YN +M   
Sbjct: 468 KELK---ENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGM 524

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K GM+ E  S+L +M+ N C  DI + N++++ + +     +  ++F+++ H   KP  
Sbjct: 525 VKAGMVNEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDG 584

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
            T+N+++  +  A +  +A  + ++M    +    ITY  I+   G  D+
Sbjct: 585 VTYNTLLGCFAHAGMFEEAARLMREMKDKGFEYDAITYSSILDAVGNMDH 634



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 128/317 (40%), Gaps = 39/317 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D    + L+ ++GK G+      +F+EM    C P    YN +I A   ++     +++ 
Sbjct: 337 DVVFLNNLMNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESK---APVSEV 393

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
             +F KMK  +   P+  TY+IL+    +   V++   L +E+ E    P    Y  +++
Sbjct: 394 SSWFDKMKA-DGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIN 452

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A GK                                  KR  ++   ++FK L  +    
Sbjct: 453 ALGK---------------------------------AKR--YEAANELFKELKENFGNV 477

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           +   +  MI ++GK     +A  +F +M      P    Y  +++       V+ A  + 
Sbjct: 478 SSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANSLL 537

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            ++ + G    +++ N +L  +   G+P  A  +FE   + G+ PD  TY  L   +  A
Sbjct: 538 RKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTLLGCFAHA 597

Query: 310 NMKELVQKLLKRMEQNG 326
            M E   +L++ M+  G
Sbjct: 598 GMFEEAARLMREMKDKG 614



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 5/155 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ +I   GK G+   A+ LF+EM+N G  PD   YNAL++  +    KA  + +A   
Sbjct: 481 VYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMV----KAGMVNEANSL 536

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            +KM+    C  +I ++NI+L   A+     +   +F+ +    + PD  TYN ++  + 
Sbjct: 537 LRKMEE-NGCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTLLGCFA 595

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
             GM +E   ++  MK    + D IT++ ++D+ G
Sbjct: 596 HAGMFEEAARLMREMKDKGFEYDAITYSSILDAVG 630



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 73/182 (40%), Gaps = 7/182 (3%)

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           +  + L+ + G+ +   K   VF      K KPT  T+NS+I+   +   +G+ E V + 
Sbjct: 163 VVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQ---EGQHEKVHEV 219

Query: 217 MTAM----KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
            T M       P  ITY  +I+ Y        A  +FDE+              +L  Y 
Sbjct: 220 YTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYF 279

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             G   +A  LFE     G +P   TY  L K   KA   E    L K M  +G+ P+  
Sbjct: 280 KVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVV 339

Query: 333 FF 334
           F 
Sbjct: 340 FL 341


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 138/316 (43%), Gaps = 5/316 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  + + G+   A+ LF++M    C P    Y  LI A   +  K +AL      F
Sbjct: 267 YTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEAL----NLF 322

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +MK  + C+PN+ TY +L+    +   +D+   +  E+ E  L P + TYN ++D Y K
Sbjct: 323 NEMKE-KGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCK 381

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            GMI +   +L  M+SN C P+  T+N LI    K++   K   +   ++  K  P+L T
Sbjct: 382 EGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLIT 441

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS+I    K      A  +   M      P   TY   I        V  A  +FD + 
Sbjct: 442 YNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVK 501

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G         A+++ YC  G    A  L E   N    P+S TY +L +   K    +
Sbjct: 502 AKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMK 561

Query: 314 LVQKLLKRMEQNGIVP 329
               L+ +M   G+ P
Sbjct: 562 EASSLVAKMLTMGVKP 577



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 144/324 (44%), Gaps = 11/324 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  Y+ LI    +      A  +F  M   GC+ +   Y  LI    H   +A  + +A
Sbjct: 228 DTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLI----HGLCEAGRINEA 283

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACA-QARNVDQVNALFKELHESILAPDIYTYNGVM 128
           L  F  M   + C P + TY +L+ A +   R V+ +N LF E+ E    P+++TY  ++
Sbjct: 284 LKLFADMTE-DNCCPTVRTYTVLIYALSGSGRKVEALN-LFNEMKEKGCEPNVHTYTVLI 341

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D   K   + E   +LS M      P ++T+N LID Y K    D   ++   +  +   
Sbjct: 342 DGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCG 401

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAR 246
           P   T+N +I    K R   KA  +  KM   K +PS ITY  +I  +G C  +++  A 
Sbjct: 402 PNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLI--HGQCKVNDLESAY 459

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +   +++ G      T +  ++  C  G   EA  LF++    GV  +   Y  L   Y
Sbjct: 460 RLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGY 519

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K    ++   LL+RM  +  +PN
Sbjct: 520 CKVGKIDVAYSLLERMLNDACLPN 543



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 143/328 (43%), Gaps = 7/328 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++  I     Y+ LI    K+G    A  +   M ++ C P+   YN LI        K 
Sbjct: 362 EKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLC----KK 417

Query: 64  KALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           + + KA+    KM  +ER   P+++TYN L+    +  +++    L   ++E+ L PD +
Sbjct: 418 RKVHKAMALLNKM--LERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQW 475

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY+  +D   K G ++E  ++   +K+   K + + +  LID Y K    D    + + +
Sbjct: 476 TYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERM 535

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           ++    P   T+N +I    K +   +A  +  KM  M   P+ +TY  +I         
Sbjct: 536 LNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAF 595

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A ++F+ +  LG    V T  A L AY   G+  E D +    +  G+ PD  TY +L
Sbjct: 596 DHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVL 655

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
              Y +  +       LK M   G  P+
Sbjct: 656 IDGYARLGLTHRAFDFLKCMVDTGCKPS 683



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 152/389 (39%), Gaps = 65/389 (16%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           A+  IY+ LI    K G+  +A  L   M N  C P+   YN LI        K K + +
Sbjct: 507 ANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLC----KEKKMKE 562

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     KM  M   KP +VTY IL+    +    D    +F  +      PD+ TY   +
Sbjct: 563 ASSLVAKMLTM-GVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFL 621

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            AY   GM++E++ V+++M      PD++T+ +LID Y +     +     K ++ +  K
Sbjct: 622 HAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCK 681

Query: 189 PTLPTFNSMIINY-------------GKARLQGKAEY-----VFQKMTAMKYTPSFITYE 230
           P+L   + +I N              G   +    EY     +F+KM     T     Y 
Sbjct: 682 PSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYG 741

Query: 231 CIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
            +I   G+C  + +  A+ +   + + G        N++L+  C  G+  EA  L +   
Sbjct: 742 ALIA--GFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMV 799

Query: 289 NMGVTPDSSTYKLLYKA-----------------------YTKANMKELVQKLLKR---- 321
             G+ P   +YKLL                          Y +   K L+  LLKR    
Sbjct: 800 ENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVD 859

Query: 322 --------MEQNGIVPNK---RFFLEALE 339
                   ME+ G  PN       +E LE
Sbjct: 860 ECSELIDIMEEKGCQPNPLTYSLLIEGLE 888



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 121/272 (44%), Gaps = 2/272 (0%)

Query: 69  ALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            L  F+KM   G  + KP +  YN +L + ++   +D++  ++ EL  + ++P+IYT+N 
Sbjct: 140 VLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNA 199

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++ Y K G + E E   S++      PD  T+  LI  + + +  D   +VF  +    
Sbjct: 200 MVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKG 259

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +    ++ ++I    +A    +A  +F  MT     P+  TY  +I           A 
Sbjct: 260 CQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEAL 319

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +F+E+ + G +  V T   +++  C      EA  +       G+ P   TY  L   Y
Sbjct: 320 NLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGY 379

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
            K  M +   ++L  ME N   PN R + E +
Sbjct: 380 CKEGMIDDAFEILDLMESNSCGPNTRTYNELI 411



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/364 (21%), Positives = 145/364 (39%), Gaps = 57/364 (15%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +  +   + D   YS  I  + K+G+   A  LF  ++  G + +  +Y ALI  +    
Sbjct: 464 LMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYC--- 520

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL-------- 112
            K   +  A    ++M   + C PN  TYN+L+    + + + + ++L  ++        
Sbjct: 521 -KVGKIDVAYSLLERMLN-DACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPT 578

Query: 113 -------------------------HESILA--PDIYTYNGVMDAYGKNGMIKEMESVLS 145
                                    H   L   PD+ TY   + AY   GM++E++ V++
Sbjct: 579 VVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIA 638

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
           +M      PD++T+ +LID Y +     +     K ++ +  KP+L   + +I N     
Sbjct: 639 KMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKN----- 693

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
                         MK T S I  + +     Y      A ++F+++ + G  + VS   
Sbjct: 694 --------LSHENRMKETRSEIGIDSVSNTLEY----EIALKLFEKMVEHGCTIDVSIYG 741

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
           A++  +C      EA  L  +    G++P    Y  L     K  +     +L+  M +N
Sbjct: 742 ALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVEN 801

Query: 326 GIVP 329
           G++P
Sbjct: 802 GLLP 805



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 135/330 (40%), Gaps = 40/330 (12%)

Query: 23  KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82
           K G    A    S++  +G  PD   Y +LI  H   R+K    A  +      KG   C
Sbjct: 206 KIGNVVEAELYASKIVQAGLHPDTFTYTSLILGH--CRNKGVDNAYEVFLIMPQKG---C 260

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           + N V+Y  L+    +A  +++   LF ++ E    P + TY  ++ A   +G   E  +
Sbjct: 261 QRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALN 320

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           + + MK   C+P++ T+ +LID   K    D+  ++   +      P++ T+N++I  Y 
Sbjct: 321 LFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYC 380

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           K  +   A  +   M +    P+  TY  +I   G C              K+ K M + 
Sbjct: 381 KEGMIDDAFEILDLMESNSCGPNTRTYNELIC--GLCKK-----------RKVHKAMAL- 426

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
            LN MLE                      ++P   TY  L     K N  E   +LL  M
Sbjct: 427 -LNKMLER--------------------KLSPSLITYNSLIHGQCKVNDLESAYRLLSLM 465

Query: 323 EQNGIVPNKRFFLEALETFSSSLAGSQSGS 352
            +NG+VP++  +   ++T        ++G+
Sbjct: 466 NENGLVPDQWTYSVFIDTLCKEGRVEEAGT 495



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 116/244 (47%), Gaps = 7/244 (2%)

Query: 92  LLRACAQARNVDQVNALFKELH---ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           ++++C    +V  V  +F++++   E    P +  YN ++ +  K  +I EM++V   + 
Sbjct: 127 MIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELL 186

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           +NQ  P+I TFN +++ Y K     + E     ++ +   P   T+ S+I+ + + +   
Sbjct: 187 NNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVD 246

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNA 266
            A  VF  M       + ++Y  +I  +G C+   ++ A ++F ++++      V T   
Sbjct: 247 NAYEVFLIMPQKGCQRNEVSYTNLI--HGLCEAGRINEALKLFADMTEDNCCPTVRTYTV 304

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           ++ A   +G   EA  LF      G  P+  TY +L     K N  +  +K+L  M + G
Sbjct: 305 LIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKG 364

Query: 327 IVPN 330
           ++P+
Sbjct: 365 LIPS 368



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 93/239 (38%), Gaps = 13/239 (5%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH------TRD 61
           + D   Y+ LI    + G T  A      M ++GC+P   + + LI    H      TR 
Sbjct: 646 LPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRS 705

Query: 62  KA--KALAKALGYFQKMKGMER-----CKPNIVTYNILLRACAQARNVDQVNALFKELHE 114
           +    +++  L Y   +K  E+     C  ++  Y  L+    Q   +++   L   + E
Sbjct: 706 EIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKE 765

Query: 115 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
             ++P    YN ++D   K G+  E   ++  M  N   P + ++ LL+       + +K
Sbjct: 766 RGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEK 825

Query: 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
            + VF  L+          +  +I    K  L  +   +   M      P+ +TY  +I
Sbjct: 826 AKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLI 884


>gi|297739653|emb|CBI29835.3| unnamed protein product [Vitis vinifera]
          Length = 852

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 148/332 (44%), Gaps = 7/332 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+ Q+ Y A   IY+ +I +  +      A  LF EM+   C+PD   YNALI AH    
Sbjct: 152 MKNQKNYCARNDIYNMMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAH---- 207

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +A     A+     M       P+  TYN L+ AC  + N  +   + K++ E+ + PD
Sbjct: 208 GRAGQWRWAMNIMDDML-RAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPD 266

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + T+N V+ AY +     ++ S    MK    +PD  T N++I    K     K   +F 
Sbjct: 267 LVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFN 326

Query: 181 SLMHSKEK--PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           S+   + +  P + TF ++I  Y         +  F  M A    P+ ++Y  +I  Y  
Sbjct: 327 SMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYAS 386

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
                 A  +F+E+ K G    V +  ++L AY  +G P +A  +FE        P+  +
Sbjct: 387 HGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVS 446

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y  L  AY    +     ++L  ME+NG+ PN
Sbjct: 447 YNALIDAYGSKGLLTEAVEILHEMERNGVQPN 478



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 146/373 (39%), Gaps = 68/373 (18%)

Query: 4   QRWYI-ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           Q+W    D   Y+ LI   G+ GQ R AM +  +M  +   P  S YN LI A   + + 
Sbjct: 189 QKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNW 248

Query: 63  AKAL-------------------------------AKALGYFQKMKGM------------ 79
            +AL                               +K L YF+ MKG             
Sbjct: 249 KEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIV 308

Query: 80  ------------------------ERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 115
                                     C P++VT+  ++   +    ++     F  +   
Sbjct: 309 IYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAE 368

Query: 116 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 175
            L P+I +YN ++ AY  +GM KE  SV + +K N   PD++++  L+++YGK    +K 
Sbjct: 369 GLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKA 428

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
            +VF+ +  +  KP L ++N++I  YG   L  +A  +  +M      P+ ++   ++  
Sbjct: 429 MKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAA 488

Query: 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
            G C    + + +       G  +  +  N+ + +Y   G   +A  L+       V PD
Sbjct: 489 CGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPD 548

Query: 296 SSTYKLLYKAYTK 308
             TY +L     K
Sbjct: 549 PVTYNVLISGCCK 561



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 144/322 (44%), Gaps = 7/322 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL-HTRDKAKALAK 68
           D   ++ +I +    GQ       F+ M   G +P+   YNALI A+  H  DK     +
Sbjct: 338 DVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDK-----E 392

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A   F ++K      P++V+Y  LL A  ++   ++   +F+ +  +   P++ +YN ++
Sbjct: 393 AFSVFNEIKK-NGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALI 451

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           DAYG  G++ E   +L  M+ N  +P+I++   L+ + G+     K++ V  +      K
Sbjct: 452 DAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIK 511

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
                +NS I +Y       KA  +++ M   K  P  +TY  +I+          A   
Sbjct: 512 LNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGF 571

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            DE+  L   +     ++++ AY   G  TEA+ +F     +G  PD  TY  +  AY  
Sbjct: 572 LDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDV 631

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
           A   E    L   ME + + P+
Sbjct: 632 AENWEKASALFLEMETDDVQPD 653



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 146/329 (44%), Gaps = 5/329 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI      G  + A  +F+E++ +G  PD   Y +L+ A+     K+    KA+  F
Sbjct: 377 YNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAY----GKSGKPEKAMKVF 432

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M+    CKPN+V+YN L+ A      + +   +  E+  + + P+I +   ++ A G+
Sbjct: 433 ELMR-RNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGR 491

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G   +++SVLS  +    K +   +N  I SY     +DK   +++++   K KP   T
Sbjct: 492 CGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVT 551

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N +I    K    G+A     +M  +K   S   Y  +I  Y     V+ A  +F ++ 
Sbjct: 552 YNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMK 611

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
            +G    V T  AM+ AY +     +A  LF       V PDS     L +A+ K     
Sbjct: 612 MVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPA 671

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            V  L + M +  I  N   F E +   S
Sbjct: 672 KVLVLAEFMREKKIPFNNSSFFEMVSACS 700



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 131/304 (43%), Gaps = 39/304 (12%)

Query: 65  ALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           +L  ++  F+ MK  +  C  N + YN+++R  A+   VDQ   LF E+ +    PD  T
Sbjct: 141 SLEHSVQVFRWMKNQKNYCARNDI-YNMMIRLHARHNIVDQARGLFFEMQKWRCKPDAET 199

Query: 124 YNGVMDAYGK-----------------------------------NGMIKEMESVLSRMK 148
           YN +++A+G+                                   +G  KE  +V  +M 
Sbjct: 200 YNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMT 259

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
            N   PD++T N+++ +Y +   + K+   F+ +  +  +P   T N +I    K    G
Sbjct: 260 ENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNG 319

Query: 209 KAEYVFQKMTAMKYT--PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
           KA  +F  M   +    P  +T+  II +Y  C  +   +  F+ +   G    + + NA
Sbjct: 320 KAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNA 379

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           ++ AY  +G+  EA  +F      G  PD  +Y  L  AY K+   E   K+ + M +N 
Sbjct: 380 LIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNH 439

Query: 327 IVPN 330
             PN
Sbjct: 440 CKPN 443



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 154/352 (43%), Gaps = 20/352 (5%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           L+A  G+ GQ      + S     G + + + YN+ I ++L   +  KAL+     ++ M
Sbjct: 485 LLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALS----LYRAM 540

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +  ++ KP+ VTYN+L+  C +     +      E+ +  +      Y+ V+ AY K G 
Sbjct: 541 R-TKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQ 599

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           + E ES+ ++MK   C+PD+IT+  +I +Y   + ++K   +F  +     +P     +S
Sbjct: 600 VTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSS 659

Query: 197 MIINYGKARLQGK----AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           ++  + K     K    AE++ +K      +  F        M   C  +   REI   +
Sbjct: 660 LMRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFF-------EMVSACSLLREWREIIGLI 712

Query: 253 SKLGKDMKVST---LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             +   + V +   LN +L     +G       LF      G   +  TY +L K    A
Sbjct: 713 KLMEPSISVVSIGLLNQLLHFLGKSGKIETMMKLFYKIVASGAEINFYTYSILLKNLLAA 772

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRSL 361
                  ++L+ ME+ G+ P+   +  ++ +F+ + +G++  +   +   SL
Sbjct: 773 GNWRKYIEVLQWMEEAGLQPSVGMY-RSISSFAQNRSGAEYAAVIQERIESL 823



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 94/220 (42%), Gaps = 40/220 (18%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +YS +I    K+GQ   A  +F++M+  GCRPD   Y A+I    H  D A+   KA   
Sbjct: 586 VYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMI----HAYDVAENWEKASAL 641

Query: 73  FQKMKGMERCKPNIVTYNILLRA-----------------------------------CA 97
           F +M+  +  +P+ +  + L+RA                                   C+
Sbjct: 642 FLEME-TDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFFEMVSACS 700

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
             R   ++  L K +  SI    I   N ++   GK+G I+ M  +  ++ ++  + +  
Sbjct: 701 LLREWREIIGLIKLMEPSISVVSIGLLNQLLHFLGKSGKIETMMKLFYKIVASGAEINFY 760

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 197
           T+++L+ +      + K  +V + +  +  +P++  + S+
Sbjct: 761 TYSILLKNLLAAGNWRKYIEVLQWMEEAGLQPSVGMYRSI 800


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 154/330 (46%), Gaps = 9/330 (2%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S L+  + K G+  +A  +   + N+G  P   +YN LI  +  T +    L  A   F 
Sbjct: 159 SILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGE----LEGAFSTFG 214

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +MK     KP+ +TYN L+    +A  +     L  E+ ++ + P + T+N ++DAYG+ 
Sbjct: 215 QMKS-RHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRT 273

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G +++   VLS M+ N  KP+++++  +++++ K     +   +   + H    P    +
Sbjct: 274 GQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVY 333

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDEL 252
           N++I  Y +     +A  + +KM +   +PS +TY  +I   G C+   +S A EI + L
Sbjct: 334 NAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIK--GLCNQSQISEAEEIINSL 391

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           S         + N ++ A C  G   +A  L +  H  G+     TY  L      A   
Sbjct: 392 SNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRL 451

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
             ++ L ++M QN +VP+       +E +S
Sbjct: 452 NEMEYLYQKMMQNNVVPSNAIHNIMVEAYS 481



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 149/332 (44%), Gaps = 13/332 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +IA M + G+   A+ +F EM      P+   YN +I  H+   D            
Sbjct: 18  YNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGF------- 70

Query: 74  QKMKGMERC---KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
            +++    C   KPN +TYN+LL    +A  + + +AL  E+    + PD +TY+ + D 
Sbjct: 71  -RLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDG 129

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             +NG  K M S+  +   N       T ++L++   K       E+V +SL+++   PT
Sbjct: 130 LSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPT 189

Query: 191 LPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              +N++I  Y +   L+G A   F +M +    P  ITY  +I      + ++ A+++ 
Sbjct: 190 RVIYNTLINGYCQTGELEG-AFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLL 248

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+   G +  V T N +++AY   G   +  ++       G+ P+  +Y  +  A+ K 
Sbjct: 249 MEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKN 308

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
                   +L  M    ++PN + +   ++ +
Sbjct: 309 GKIPEAVAILDDMFHKDVLPNAQVYNAIIDAY 340



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 144/312 (46%), Gaps = 5/312 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ LI    + G+   A   F +M++   +PD   YNALI        KA+ +  A   
Sbjct: 192 IYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLC----KAERITNAQDL 247

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +M+      P + T+N L+ A  +   +++   +  E+ E+ L P++ +Y  +++A+ 
Sbjct: 248 LMEMQD-NGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFC 306

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           KNG I E  ++L  M      P+   +N +ID+Y +    D+   + + +  +   P++ 
Sbjct: 307 KNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIV 366

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N +I          +AE +   ++  +  P  ++Y  +I+   Y  N+ +A ++   +
Sbjct: 367 TYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRM 426

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            K G    V T + ++      G   E + L++      V P ++ + ++ +AY+K   +
Sbjct: 427 HKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNE 486

Query: 313 ELVQKLLKRMEQ 324
              + L K M Q
Sbjct: 487 IKAEDLRKEMLQ 498



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 138/319 (43%), Gaps = 9/319 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L++ + + G+      L  EM +    PD   Y+ L    L     +KA+    G +
Sbjct: 88  YNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDG-LSRNGDSKAMLSLFGKY 146

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K            T +ILL    +   V     + + L  + L P    YN +++ Y +
Sbjct: 147 LK----NGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQ 202

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++   S   +MKS   KPD IT+N LI+   K +     + +   +  +   PT+ T
Sbjct: 203 TGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVET 262

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           FN++I  YG+     K   V  +M      P+ ++Y  I+  +     +  A  I D++ 
Sbjct: 263 FNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDM- 321

Query: 254 KLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
              KD+       NA+++AY  +G   +A +L E   + G++P   TY LL K     + 
Sbjct: 322 -FHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQ 380

Query: 312 KELVQKLLKRMEQNGIVPN 330
               ++++  +  + ++P+
Sbjct: 381 ISEAEEIINSLSNHRLIPD 399



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 109/266 (40%), Gaps = 10/266 (3%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           PN  +YN+++    +A        +F E+ E  + P+  TYN ++D + K G ++    +
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 72

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
             +M  +  KP+ IT+N+L+    +     +   +   +   K  P    F   I+  G 
Sbjct: 73  RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPD--GFTYSILFDGL 130

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFIT---YECIITMYGYCDN--VSRAREIFDELSKLGKD 258
           +R  G ++ +       KY  + +T   Y C I + G C +  VS A E+   L   G  
Sbjct: 131 SR-NGDSKAMLSLFG--KYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLV 187

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
                 N ++  YC  G    A   F    +  + PD  TY  L     KA      Q L
Sbjct: 188 PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDL 247

Query: 319 LKRMEQNGIVPNKRFFLEALETFSSS 344
           L  M+ NG+ P    F   ++ +  +
Sbjct: 248 LMEMQDNGVNPTVETFNTLIDAYGRT 273



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 9/176 (5%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKAL 70
           +Y+ +I    + G    A  L  +M+++G  P    YN LI    +     +A+ +  +L
Sbjct: 332 VYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSL 391

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
                     R  P+ V+YN L+ AC    N+D+   L + +H+  +   + TY+ ++  
Sbjct: 392 SN-------HRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISG 444

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
            G  G + EME +  +M  N   P     N+++++Y K     K E + K ++  +
Sbjct: 445 LGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKR 500


>gi|242054943|ref|XP_002456617.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
 gi|241928592|gb|EES01737.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
          Length = 410

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 145/321 (45%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D    + L+    + G    A  +F  M   G  P+   Y ALI  H +     + +  A
Sbjct: 37  DVAACTALVHGCCQSGDVAEARRVFDVMPRLGVTPNEVTYTALI--HGYFVRGQREMGFA 94

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L    +  G+E   PN+ TYN L+    +         LF E+    +  ++ +YN ++ 
Sbjct: 95  LVGEMRRGGVE---PNLYTYNCLVGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNILIA 151

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              ++G +K+   +   M+     P ++TFNLLID YGK          F  +  +  +P
Sbjct: 152 GLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQP 211

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           ++ T+N +I  + +AR    A   F  M   +  P+ +TY  +I  +   + + RA E+ 
Sbjct: 212 SVVTYNELIGGFCRARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKENEMDRAFEML 271

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+ K G ++ V +   +L A CM G    A  LF++  + GV P++  Y ++   Y + 
Sbjct: 272 SEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDSKGVKPNNVLYDMMIYGYGRE 331

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
                  +L+  M ++G++PN
Sbjct: 332 GSSYKALRLIMEMRKSGLIPN 352



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 135/330 (40%), Gaps = 40/330 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI     +GQ  +   L  EMR  G  P+   YN L+     T +   A  + L   
Sbjct: 76  YTALIHGYFVRGQREMGFALVGEMRRGGVEPNLYTYNCLVGEWCRTGEFKSA--RLLFDE 133

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             +KG+ R   N+V+YNIL+    +   +     LF+ +    + P + T+N ++D YGK
Sbjct: 134 MPLKGVVR---NVVSYNILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGK 190

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +       ++MK+   +P ++T+N LI  + + +      + F  +   +  PT  T
Sbjct: 191 AGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRARDIAHAIRAFSDMKERRLAPTKVT 250

Query: 194 FNSMIINYGKAR--------------------------------LQGK---AEYVFQKMT 218
           +  +I  + K                                  ++GK   A  +FQ M 
Sbjct: 251 YTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMD 310

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           +    P+ + Y+ +I  YG   +  +A  +  E+ K G    V++    +   C  G   
Sbjct: 311 SKGVKPNNVLYDMMIYGYGREGSSYKALRLIMEMRKSGLIPNVASYCLTIRLLCNEGKCQ 370

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           EA+ L  +  + G+    S  ++L+ A  +
Sbjct: 371 EAEALIGDMEDAGLQTSESICRVLFDAKAR 400



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 90/214 (42%), Gaps = 11/214 (5%)

Query: 137 IKEMESVLSR-MKSNQCKPDIITFNLLIDSYGKRQAFDKME--QVFKSLMHSKEKPTLPT 193
           ++   +VL+R  KS     D+     L+  +G  Q+ D  E  +VF  +      P   T
Sbjct: 18  VRSALAVLARGTKSGDAALDVAACTALV--HGCCQSGDVAEARRVFDVMPRLGVTPNEVT 75

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVSRAREIFD 250
           + ++I  Y    ++G+ E  F  +  M+     P+  TY C++  +        AR +FD
Sbjct: 76  YTALIHGY---FVRGQREMGFALVGEMRRGGVEPNLYTYNCLVGEWCRTGEFKSARLLFD 132

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+   G    V + N ++   C +G   +A  LFE     G+ P   T+ LL   Y KA 
Sbjct: 133 EMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKAG 192

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
                     +M+  G+ P+   + E +  F  +
Sbjct: 193 KMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRA 226



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/269 (20%), Positives = 97/269 (36%), Gaps = 35/269 (13%)

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
           R CA A     +  L +       A D+     ++    ++G + E   V   M      
Sbjct: 11  RLCAAAEVRSALAVLARGTKSGDAALDVAACTALVHGCCQSGDVAEARRVFDVMPRLGVT 70

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK------ARL- 206
           P+ +T+  LI  Y  R   +    +   +     +P L T+N ++  + +      ARL 
Sbjct: 71  PNEVTYTALIHGYFVRGQREMGFALVGEMRRGGVEPNLYTYNCLVGEWCRTGEFKSARLL 130

Query: 207 -------------------------QGK---AEYVFQKMTAMKYTPSFITYECIITMYGY 238
                                     GK   A  +F+ M      PS +T+  +I  YG 
Sbjct: 131 FDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGK 190

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              +S A   F+++   G    V T N ++  +C       A   F +     + P   T
Sbjct: 191 AGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRARDIAHAIRAFSDMKERRLAPTKVT 250

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           Y +L  A+ K N  +   ++L  ME+ G+
Sbjct: 251 YTILIGAFAKENEMDRAFEMLSEMEKAGL 279


>gi|227202654|dbj|BAH56800.1| AT2G41720 [Arabidopsis thaliana]
          Length = 815

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 164/373 (43%), Gaps = 32/373 (8%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH---- 56
           M+ Q+ Y A   IY+ +I +  +      A  LF EM+   C+PD   Y+ALI AH    
Sbjct: 133 MKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAG 192

Query: 57  -----------------LHTRDKAKALAKALGYFQKMK-GMERCK--------PNIVTYN 90
                              +R     L  A G     +  +E CK        P++VT+N
Sbjct: 193 QWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHN 252

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM--K 148
           I+L A    R   +  + F+ +  + + PD  T+N ++    K G   +   + + M  K
Sbjct: 253 IVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREK 312

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
             +C+PD++TF  ++  Y  +   +    VF++++    KP + ++N+++  Y    + G
Sbjct: 313 RAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSG 372

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A  V   +      P  ++Y C++  YG      +A+E+F  + K  +   V T NA++
Sbjct: 373 TALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALI 432

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           +AY  NG   EA  +F      G+ P+  +   L  A +++  K  V  +L   +  GI 
Sbjct: 433 DAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGIN 492

Query: 329 PNKRFFLEALETF 341
            N   +  A+ ++
Sbjct: 493 LNTAAYNSAIGSY 505



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 166/362 (45%), Gaps = 50/362 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRN--SGCRPDPSVYNALITAHLHTRDKAKALA 67
           DT  ++ +I  + K GQ+  A+ LF+ MR   + CRPD   + +++  HL++        
Sbjct: 282 DTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIM--HLYSVKGEIENC 339

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A+  F+ M   E  KPNIV+YN L+ A A         ++  ++ ++ + PD+ +Y  +
Sbjct: 340 RAV--FEAMVA-EGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCL 396

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-------QAFDKMEQ--- 177
           +++YG++    + + V   M+  + KP+++T+N LID+YG         + F +MEQ   
Sbjct: 397 LNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGI 456

Query: 178 ---------VFKSLMHSKEKPTLPT----------------FNSMIINYGKARLQGKAEY 212
                    +  +   SK+K  + T                +NS I +Y  A    KA  
Sbjct: 457 KPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIA 516

Query: 213 VFQKMTAMKYTPSFITYECIIT----MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           ++Q M   K     +T+  +I+    M  Y + +S  +E+ D    L K++  S L    
Sbjct: 517 LYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLC--- 573

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
            AY   G  TEA+ +F      G  PD   Y  +  AY  +       +LL  ME NGI 
Sbjct: 574 -AYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELLLEMEANGIE 632

Query: 329 PN 330
           P+
Sbjct: 633 PD 634



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 124/275 (45%), Gaps = 6/275 (2%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C  N + YN+++R  A+   VDQ   LF E+ +    PD  TY+ +++A+G+ G  +   
Sbjct: 140 CARNDI-YNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAM 198

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           +++  M      P   T+N LI++ G    + +  +V K +  +   P L T N ++  Y
Sbjct: 199 NLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAY 258

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK- 260
              R   KA   F+ M   K  P   T+  II         S+A ++F+ + +   + + 
Sbjct: 259 KSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRP 318

Query: 261 -VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            V T  +++  Y + G       +FE     G+ P+  +Y  L  AY    M      +L
Sbjct: 319 DVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVL 378

Query: 320 KRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAK 354
             ++QNGI+P+   +   L ++  S    Q G AK
Sbjct: 379 GDIKQNGIIPDVVSYTCLLNSYGRS---RQPGKAK 410



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 124/283 (43%), Gaps = 5/283 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ   I D   Y+ L+   G+  Q   A  +F  MR    +P+   YNALI A+      
Sbjct: 382 KQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAY----GS 437

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              LA+A+  F++M+  +  KPN+V+   LL AC++++    V+ +        +  +  
Sbjct: 438 NGFLAEAVEIFRQME-QDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTA 496

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            YN  + +Y     +++  ++   M+  + K D +TF +LI    +   + +     K +
Sbjct: 497 AYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEM 556

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                  T   ++S++  Y K     +AE +F +M      P  I Y  ++  Y   +  
Sbjct: 557 EDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKW 616

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
            +A E+  E+   G +      +A++ A+   G P+   +L +
Sbjct: 617 GKACELLLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMD 659



 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 51/256 (19%), Positives = 105/256 (41%), Gaps = 21/256 (8%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD+  ++ LI+   +  +   A+    EM +        VY++++ A+     K   + +
Sbjct: 528 ADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAY----SKQGQVTE 583

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A   F +MK M  C+P+++ Y  +L A   +    +   L  E+  + + PD    + +M
Sbjct: 584 AESIFNQMK-MAGCEPDVIAYTSMLHAYNASEKWGKACELLLEMEANGIEPDSIACSALM 642

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            A+ K G    +  ++  M+  +       F  +  +    Q + +   + + +      
Sbjct: 643 RAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQMM-----D 697

Query: 189 PTLPTF-----NSMIINYGKARLQGKAEY---VFQKMTAMKYTPSFITYECIITMYGYCD 240
           P LP+      N M+  +GK+   GK E    +F K+ A     +  TY  ++       
Sbjct: 698 PYLPSLSIGLTNQMLHLFGKS---GKVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVG 754

Query: 241 NVSRAREIFDELSKLG 256
           N  +  E+ + +S  G
Sbjct: 755 NWRKYIEVLEWMSGAG 770


>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
           [Vitis vinifera]
 gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 149/329 (45%), Gaps = 12/329 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D+  ++ +I    + G  + AM +F +M++ GC+P  S +N LI  +      A    + 
Sbjct: 140 DSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGY----GNAGMPEEC 195

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           L     M   E  KPN  T+N L+RA C + R  +  N ++K +  S L PD+ TYN + 
Sbjct: 196 LKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYK-MAASGLQPDVVTYNTLA 254

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE- 187
            AY +NG     E ++  M++N+  P+  T  ++I+ Y K     KM+   + L   +  
Sbjct: 255 RAYAQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCKE---GKMKDALRFLYRMRNY 311

Query: 188 --KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P L  FNS+I  +         +     M      P  +T+  I+  +     + + 
Sbjct: 312 GVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFSTIMNAWSSVGLMDKC 371

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           +EIFD++ K G +  +   + + + Y   G P +A+ L       GV P+   +  +   
Sbjct: 372 QEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQPNVVIFTTIISG 431

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           +  A   E   ++ ++M + GI PN + F
Sbjct: 432 WCSAGKMEYASRVYEKMCEMGICPNLKTF 460



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 151/332 (45%), Gaps = 6/332 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+A + ++ + +    L S++  +G +PD   +NA+I A   + +    + +A+  F
Sbjct: 109 YTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFFNAMINAFSESGN----VKEAMKIF 164

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL-HESILAPDIYTYNGVMDAYG 132
           +KMK    CKP   T+N L++    A   ++   L   +  E  + P+  T+N ++ A+ 
Sbjct: 165 RKMKD-RGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWC 223

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
               I E  +V+ +M ++  +PD++T+N L  +Y +     + E +   + +++  P   
Sbjct: 224 NKKRITEAWNVVYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNRVMPNER 283

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T   +I  Y K      A     +M      P+ + +  +I  +    +     E    +
Sbjct: 284 TCGIIINGYCKEGKMKDALRFLYRMRNYGVHPNLVIFNSLIKGFLDITDTDGVDEALTLM 343

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            + G    V T + ++ A+   GL  +   +F++    G+ PD   + +L K Y +A   
Sbjct: 344 EEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEP 403

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           E  + LL  M ++G+ PN   F   +  + S+
Sbjct: 404 EKAESLLTAMGKSGVQPNVVIFTTIISGWCSA 435



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 117/263 (44%), Gaps = 3/263 (1%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P ++TY  LL A  + +    + +L  +L ++ L PD   +N +++A+ ++G +KE   
Sbjct: 103 RPTLITYTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFFNAMINAFSESGNVKEAMK 162

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE--KPTLPTFNSMIIN 200
           +  +MK   CKP   TFN LI  YG     ++  ++   LM  +E  KP   TFNS+I  
Sbjct: 163 IFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKLL-DLMSQEENVKPNDRTFNSLIRA 221

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
           +   +   +A  V  KM A    P  +TY  +   Y      SRA  +  E+        
Sbjct: 222 WCNKKRITEAWNVVYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNRVMPN 281

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
             T   ++  YC  G   +A        N GV P+   +  L K +      + V + L 
Sbjct: 282 ERTCGIIINGYCKEGKMKDALRFLYRMRNYGVHPNLVIFNSLIKGFLDITDTDGVDEALT 341

Query: 321 RMEQNGIVPNKRFFLEALETFSS 343
            ME+ G+ P+   F   +  +SS
Sbjct: 342 LMEEFGVKPDVVTFSTIMNAWSS 364



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 137/311 (44%), Gaps = 16/311 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L     + G+T  A  +  EM+N+   P+      +I  +     K   +  A
Sbjct: 246 DVVTYNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYC----KEGKMKDA 301

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L +  +M+      PN+V +N L++      + D V+     + E  + PD+ T++ +M+
Sbjct: 302 LRFLYRMRNY-GVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFSTIMN 360

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A+   G++ + + +   M     +PDI  F++L   Y +    +K E +  ++  S  +P
Sbjct: 361 AWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQP 420

Query: 190 TLPTFNSMIINYGKARLQGKAEY---VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +  F ++I  +  A   GK EY   V++KM  M   P+  T+E +I  YG      +A 
Sbjct: 421 NVVIFTTIISGWCSA---GKMEYASRVYEKMCEMGICPNLKTFETLIWGYGEAKEPQKAE 477

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN-----MGVTPDSSTYKL 301
           E+   + + G     ST+  + +A+   GL  EA  +  +        +    D    + 
Sbjct: 478 ELLQIMEQKGVAPVKSTIQLVADAWHALGLANEAKRIKNDVEEAPKVMISTKEDDVAAES 537

Query: 302 LYKAYTKANMK 312
           L + Y K N+K
Sbjct: 538 LERIYQKQNLK 548



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 107/235 (45%), Gaps = 1/235 (0%)

Query: 108 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
           +F  L E    P + TY  ++ A  +    K + S++S+++ N  KPD + FN +I+++ 
Sbjct: 93  IFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFFNAMINAFS 152

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSF 226
           +     +  ++F+ +     KPT  TFN++I  YG A +  +   +   M+  +   P+ 
Sbjct: 153 ESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQEENVKPND 212

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
            T+  +I  +     ++ A  +  +++  G    V T N +  AY  NG  + A+ +   
Sbjct: 213 RTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMILE 272

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
             N  V P+  T  ++   Y K    +   + L RM   G+ PN   F   ++ F
Sbjct: 273 MQNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRMRNYGVHPNLVIFNSLIKGF 327



 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 35/70 (50%)

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           G P EA L+F +    G  P   TY  L  A T+    + +  L+ ++E+NG+ P+  FF
Sbjct: 85  GKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFF 144

Query: 335 LEALETFSSS 344
              +  FS S
Sbjct: 145 NAMINAFSES 154


>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
 gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
 gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
 gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 149/312 (47%), Gaps = 5/312 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q  +  D   Y+ ++  +G+  Q      L  EM   GC+P+   YN LI    H+ 
Sbjct: 354 LKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLI----HSY 409

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +A  L +A+  F +M+    CKP+ VTY  L+   A+A  +D    +++ +    L+PD
Sbjct: 410 GRANYLNEAMNVFNQMQ-EAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPD 468

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            +TY+ +++  GK G +     +   M    C P+++T+N+++D + K + +    ++++
Sbjct: 469 TFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYR 528

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            + ++  +P   T++ ++   G      +AE VF +M    + P    Y  ++ ++G   
Sbjct: 529 DMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAG 588

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           NV +A + +  +   G    V T N++L  +       EA  L +N   +G+ P   TY 
Sbjct: 589 NVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYT 648

Query: 301 LLYKAYTKANMK 312
           LL    T    K
Sbjct: 649 LLLSCCTDGRSK 660



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 120/275 (43%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             ALG+F  +K     K +  TY  ++    +A+    +N L  E+      P+  TYN 
Sbjct: 345 GNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNR 404

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++ +YG+   + E  +V ++M+   CKPD +T+  LID + K    D    +++ +    
Sbjct: 405 LIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGG 464

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P   T++ +I   GKA     A  +F +M     TP+ +TY  ++ ++    N   A 
Sbjct: 465 LSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNAL 524

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           +++ ++   G +    T + ++E     G   EA+ +F         PD   Y LL   +
Sbjct: 525 KLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLW 584

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            KA   E   +  + M   G+ PN       L TF
Sbjct: 585 GKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTF 619


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 154/330 (46%), Gaps = 9/330 (2%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S L+  + K G+  +A  +   + N+G  P   +YN LI  +  T +    L  A   F 
Sbjct: 344 SILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGE----LEGAFSTFG 399

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +MK     KP+ +TYN L+    +A  +     L  E+ ++ + P + T+N ++DAYG+ 
Sbjct: 400 QMKS-RHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRT 458

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G +++   VLS M+ N  KP+++++  +++++ K     +   +   + H    P    +
Sbjct: 459 GQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVY 518

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDEL 252
           N++I  Y +     +A  + +KM +   +PS +TY  +I   G C+   +S A EI + L
Sbjct: 519 NAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIK--GLCNQSQISEAEEIINSL 576

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           S         + N ++ A C  G   +A  L +  H  G+     TY  L      A   
Sbjct: 577 SNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRL 636

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
             ++ L ++M QN +VP+       +E +S
Sbjct: 637 NEMEYLYQKMMQNNVVPSNAIHNIMVEAYS 666



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 149/332 (44%), Gaps = 13/332 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +IA M + G+   A+ +F EM      P+   YN +I  H+   D            
Sbjct: 203 YNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGF------- 255

Query: 74  QKMKGMERC---KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
            +++    C   KPN +TYN+LL    +A  + + +AL  E+    + PD +TY+ + D 
Sbjct: 256 -RLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDG 314

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             +NG  K M S+  +   N       T ++L++   K       E+V +SL+++   PT
Sbjct: 315 LSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPT 374

Query: 191 LPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              +N++I  Y +   L+G A   F +M +    P  ITY  +I      + ++ A+++ 
Sbjct: 375 RVIYNTLINGYCQTGELEG-AFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLL 433

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+   G +  V T N +++AY   G   +  ++       G+ P+  +Y  +  A+ K 
Sbjct: 434 MEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKN 493

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
                   +L  M    ++PN + +   ++ +
Sbjct: 494 GKIPEAVAILDDMFHKDVLPNAQVYNAIIDAY 525



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 144/312 (46%), Gaps = 5/312 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ LI    + G+   A   F +M++   +PD   YNALI        KA+ +  A   
Sbjct: 377 IYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLC----KAERITNAQDL 432

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +M+      P + T+N L+ A  +   +++   +  E+ E+ L P++ +Y  +++A+ 
Sbjct: 433 LMEMQD-NGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFC 491

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           KNG I E  ++L  M      P+   +N +ID+Y +    D+   + + +  +   P++ 
Sbjct: 492 KNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIV 551

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N +I          +AE +   ++  +  P  ++Y  +I+   Y  N+ +A ++   +
Sbjct: 552 TYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRM 611

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            K G    V T + ++      G   E + L++      V P ++ + ++ +AY+K   +
Sbjct: 612 HKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNE 671

Query: 313 ELVQKLLKRMEQ 324
              + L K M Q
Sbjct: 672 IKAEDLRKEMLQ 683



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 138/319 (43%), Gaps = 9/319 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L++ + + G+      L  EM +    PD   Y+ L    L     +KA+    G +
Sbjct: 273 YNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDG-LSRNGDSKAMLSLFGKY 331

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K            T +ILL    +   V     + + L  + L P    YN +++ Y +
Sbjct: 332 LK----NGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQ 387

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++   S   +MKS   KPD IT+N LI+   K +     + +   +  +   PT+ T
Sbjct: 388 TGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVET 447

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           FN++I  YG+     K   V  +M      P+ ++Y  I+  +     +  A  I D++ 
Sbjct: 448 FNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDM- 506

Query: 254 KLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
              KD+       NA+++AY  +G   +A +L E   + G++P   TY LL K     + 
Sbjct: 507 -FHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQ 565

Query: 312 KELVQKLLKRMEQNGIVPN 330
               ++++  +  + ++P+
Sbjct: 566 ISEAEEIINSLSNHRLIPD 584



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 135/328 (41%), Gaps = 17/328 (5%)

Query: 22  GKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER 81
           G+    R A   F  + ++G RPD   +N  + A +   D    L +A+G  ++M     
Sbjct: 143 GRHADVRRA---FGILASAGARPDTFAWNKAVQACVAAGD----LGEAVGMLRRMGRDGA 195

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
             PN  +YN+++    +A        +F E+ E  + P+  TYN ++D + K G ++   
Sbjct: 196 PPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGF 255

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
            +  +M  +  KP+ IT+N+L+    +     +   +   +   K  P    F   I+  
Sbjct: 256 RLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPD--GFTYSILFD 313

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFIT---YECIITMYGYCDN--VSRAREIFDELSKLG 256
           G +R  G ++ +       KY  + +T   Y C I + G C +  VS A E+   L   G
Sbjct: 314 GLSR-NGDSKAMLSLFG--KYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAG 370

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
                   N ++  YC  G    A   F    +  + PD  TY  L     KA      Q
Sbjct: 371 LVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQ 430

Query: 317 KLLKRMEQNGIVPNKRFFLEALETFSSS 344
            LL  M+ NG+ P    F   ++ +  +
Sbjct: 431 DLLMEMQDNGVNPTVETFNTLIDAYGRT 458



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 9/176 (5%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKAL 70
           +Y+ +I    + G    A  L  +M+++G  P    YN LI    +     +A+ +  +L
Sbjct: 517 VYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSL 576

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
                     R  P+ V+YN L+ AC    N+D+   L + +H+  +   + TY+ ++  
Sbjct: 577 SN-------HRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISG 629

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
            G  G + EME +  +M  N   P     N+++++Y K     K E + K ++  +
Sbjct: 630 LGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKR 685


>gi|2335106|gb|AAC02776.1| putative salt-inducible protein [Arabidopsis thaliana]
          Length = 810

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 164/373 (43%), Gaps = 32/373 (8%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH---- 56
           M+ Q+ Y A   IY+ +I +  +      A  LF EM+   C+PD   Y+ALI AH    
Sbjct: 133 MKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAG 192

Query: 57  -----------------LHTRDKAKALAKALGYFQKMK-GMERCK--------PNIVTYN 90
                              +R     L  A G     +  +E CK        P++VT+N
Sbjct: 193 QWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHN 252

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM--K 148
           I+L A    R   +  + F+ +  + + PD  T+N ++    K G   +   + + M  K
Sbjct: 253 IVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREK 312

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
             +C+PD++TF  ++  Y  +   +    VF++++    KP + ++N+++  Y    + G
Sbjct: 313 RAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSG 372

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A  V   +      P  ++Y C++  YG      +A+E+F  + K  +   V T NA++
Sbjct: 373 TALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALI 432

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           +AY  NG   EA  +F      G+ P+  +   L  A +++  K  V  +L   +  GI 
Sbjct: 433 DAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGIN 492

Query: 329 PNKRFFLEALETF 341
            N   +  A+ ++
Sbjct: 493 LNTAAYNSAIGSY 505



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 153/346 (44%), Gaps = 25/346 (7%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMR---NSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           +  LI  + ++G   L + +F  M+   N   R D  +YN +I   LH R      A+ L
Sbjct: 110 FPVLIRELSRRGCIELCVNVFKWMKIQKNYCARND--IYNMMI--RLHARHNWVDQARGL 165

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
            +F+  K    CKP+  TY+ L+ A  +A        L  ++  + +AP   TYN +++A
Sbjct: 166 -FFEMQKW--SCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINA 222

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
            G +G  +E   V  +M  N   PD++T N+++ +Y   + + K    F+ +  +K +P 
Sbjct: 223 CGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPD 282

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT--PSFITYECIITMYGYCDNVSRAREI 248
             TFN +I    K     +A  +F  M   +    P  +T+  I+ +Y     +   R +
Sbjct: 283 TTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAV 342

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F+ +   G    + + NA++ AY ++G+   A  +  +    G+ PD  +Y  L  +Y +
Sbjct: 343 FEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGR 402

Query: 309 ANMKELVQKLLKRMEQNGIVPN-------------KRFFLEALETF 341
           +      +++   M +    PN               F  EA+E F
Sbjct: 403 SRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIF 448



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 161/362 (44%), Gaps = 62/362 (17%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRN--SGCRPDPSVYNALITAHLHTRDKAKALA 67
           DT  ++ +I  + K GQ+  A+ LF+ MR   + CRPD   + +++  HL++        
Sbjct: 282 DTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIM--HLYSVKGEIENC 339

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A+  F+ M   E  KPNIV+YN L+ A A         ++  ++ ++ + PD+ +Y  +
Sbjct: 340 RAV--FEAMVA-EGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCL 396

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-------QAFDKMEQ--- 177
           +++YG++    + + V   M+  + KP+++T+N LID+YG         + F +MEQ   
Sbjct: 397 LNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGI 456

Query: 178 ---------VFKSLMHSKEKPTLPT----------------FNSMIINYGKARLQGKAEY 212
                    +  +   SK+K  + T                +NS I +Y  A    KA  
Sbjct: 457 KPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIA 516

Query: 213 VFQKMTAMKYTPSFITYECIIT----MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           ++Q M   K     +T+  +I+    M  Y + +S  +E+ D    L K+ +V       
Sbjct: 517 LYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEGQV------- 569

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
                    TEA+ +F      G  PD   Y  +  AY  +       +L   ME NGI 
Sbjct: 570 ---------TEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIE 620

Query: 329 PN 330
           P+
Sbjct: 621 PD 622



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 124/275 (45%), Gaps = 6/275 (2%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C  N + YN+++R  A+   VDQ   LF E+ +    PD  TY+ +++A+G+ G  +   
Sbjct: 140 CARNDI-YNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAM 198

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           +++  M      P   T+N LI++ G    + +  +V K +  +   P L T N ++  Y
Sbjct: 199 NLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAY 258

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK- 260
              R   KA   F+ M   K  P   T+  II         S+A ++F+ + +   + + 
Sbjct: 259 KSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRP 318

Query: 261 -VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            V T  +++  Y + G       +FE     G+ P+  +Y  L  AY    M      +L
Sbjct: 319 DVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVL 378

Query: 320 KRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAK 354
             ++QNGI+P+   +   L ++  S    Q G AK
Sbjct: 379 GDIKQNGIIPDVVSYTCLLNSYGRS---RQPGKAK 410


>gi|359481811|ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Vitis vinifera]
          Length = 848

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 150/334 (44%), Gaps = 11/334 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+ Q+ Y A   IY+ +I +  +      A  LF EM+   C+PD   YNALI AH    
Sbjct: 152 MKNQKNYCARNDIYNMMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAH---- 207

Query: 61  DKAKALAKALGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
            +A     A+     M  M R    P+  TYN L+ AC  + N  +   + K++ E+ + 
Sbjct: 208 GRAGQWRWAMNI---MDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVG 264

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD+ T+N V+ AY +     ++ S    MK    +PD  T N++I    K     K   +
Sbjct: 265 PDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDI 324

Query: 179 FKSLMHSKEK--PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           F S+   + +  P + TF ++I  Y         +  F  M A    P+ ++Y  +I  Y
Sbjct: 325 FNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAY 384

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                   A  +F+E+ K G    V +  ++L AY  +G P +A  +FE        P+ 
Sbjct: 385 ASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNL 444

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +Y  L  AY    +     ++L  ME+NG+ PN
Sbjct: 445 VSYNALIDAYGSKGLLTEAVEILHEMERNGVQPN 478



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 146/373 (39%), Gaps = 68/373 (18%)

Query: 4   QRWYI-ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           Q+W    D   Y+ LI   G+ GQ R AM +  +M  +   P  S YN LI A   + + 
Sbjct: 189 QKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNW 248

Query: 63  AKAL-------------------------------AKALGYFQKMKGM------------ 79
            +AL                               +K L YF+ MKG             
Sbjct: 249 KEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIV 308

Query: 80  ------------------------ERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 115
                                     C P++VT+  ++   +    ++     F  +   
Sbjct: 309 IYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAE 368

Query: 116 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 175
            L P+I +YN ++ AY  +GM KE  SV + +K N   PD++++  L+++YGK    +K 
Sbjct: 369 GLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKA 428

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
            +VF+ +  +  KP L ++N++I  YG   L  +A  +  +M      P+ ++   ++  
Sbjct: 429 MKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAA 488

Query: 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
            G C    + + +       G  +  +  N+ + +Y   G   +A  L+       V PD
Sbjct: 489 CGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPD 548

Query: 296 SSTYKLLYKAYTK 308
             TY +L     K
Sbjct: 549 PVTYNVLISGCCK 561



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 144/322 (44%), Gaps = 7/322 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL-HTRDKAKALAK 68
           D   ++ +I +    GQ       F+ M   G +P+   YNALI A+  H  DK     +
Sbjct: 338 DVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDK-----E 392

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A   F ++K      P++V+Y  LL A  ++   ++   +F+ +  +   P++ +YN ++
Sbjct: 393 AFSVFNEIKK-NGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALI 451

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           DAYG  G++ E   +L  M+ N  +P+I++   L+ + G+     K++ V  +      K
Sbjct: 452 DAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIK 511

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
                +NS I +Y       KA  +++ M   K  P  +TY  +I+          A   
Sbjct: 512 LNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGF 571

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            DE+  L   +     ++++ AY   G  TEA+ +F     +G  PD  TY  +  AY  
Sbjct: 572 LDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDV 631

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
           A   E    L   ME + + P+
Sbjct: 632 AENWEKASALFLEMETDDVQPD 653



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 146/329 (44%), Gaps = 5/329 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI      G  + A  +F+E++ +G  PD   Y +L+ A+     K+    KA+  F
Sbjct: 377 YNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAY----GKSGKPEKAMKVF 432

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M+    CKPN+V+YN L+ A      + +   +  E+  + + P+I +   ++ A G+
Sbjct: 433 ELMR-RNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGR 491

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G   +++SVLS  +    K +   +N  I SY     +DK   +++++   K KP   T
Sbjct: 492 CGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVT 551

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N +I    K    G+A     +M  +K   S   Y  +I  Y     V+ A  +F ++ 
Sbjct: 552 YNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMK 611

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
            +G    V T  AM+ AY +     +A  LF       V PDS     L +A+ K     
Sbjct: 612 MVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPA 671

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            V  L + M +  I  N   F E +   S
Sbjct: 672 KVLVLAEFMREKKIPFNNSSFFEMVSACS 700



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 131/304 (43%), Gaps = 39/304 (12%)

Query: 65  ALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           +L  ++  F+ MK  +  C  N + YN+++R  A+   VDQ   LF E+ +    PD  T
Sbjct: 141 SLEHSVQVFRWMKNQKNYCARNDI-YNMMIRLHARHNIVDQARGLFFEMQKWRCKPDAET 199

Query: 124 YNGVMDAYGK-----------------------------------NGMIKEMESVLSRMK 148
           YN +++A+G+                                   +G  KE  +V  +M 
Sbjct: 200 YNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMT 259

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
            N   PD++T N+++ +Y +   + K+   F+ +  +  +P   T N +I    K    G
Sbjct: 260 ENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNG 319

Query: 209 KAEYVFQKMTAMKYT--PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
           KA  +F  M   +    P  +T+  II +Y  C  +   +  F+ +   G    + + NA
Sbjct: 320 KAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNA 379

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           ++ AY  +G+  EA  +F      G  PD  +Y  L  AY K+   E   K+ + M +N 
Sbjct: 380 LIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNH 439

Query: 327 IVPN 330
             PN
Sbjct: 440 CKPN 443



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 150/340 (44%), Gaps = 20/340 (5%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           L+A  G+ GQ      + S     G + + + YN+ I ++L   +  KAL+     ++ M
Sbjct: 485 LLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALS----LYRAM 540

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +  ++ KP+ VTYN+L+  C +     +      E+ +  +      Y+ V+ AY K G 
Sbjct: 541 R-TKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQ 599

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           + E ES+ ++MK   C+PD+IT+  +I +Y   + ++K   +F  +     +P     +S
Sbjct: 600 VTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSS 659

Query: 197 MIINYGKARLQGK----AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           ++  + K     K    AE++ +K      +  F        M   C  +   REI   +
Sbjct: 660 LMRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFF-------EMVSACSLLREWREIIGLI 712

Query: 253 SKLGKDMKVST---LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             +   + V +   LN +L     +G       LF      G   +  TY +L K    A
Sbjct: 713 KLMEPSISVVSIGLLNQLLHFLGKSGKIETMMKLFYKIVASGAEINFYTYSILLKNLLAA 772

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQ 349
                  ++L+ ME+ G+ P+   +  ++ +F+ + +G++
Sbjct: 773 GNWRKYIEVLQWMEEAGLQPSVGMY-RSISSFAQNRSGAE 811



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 103/243 (42%), Gaps = 41/243 (16%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +YS +I    K+GQ   A  +F++M+  GCRPD   Y A+I    H  D A+   KA   
Sbjct: 586 VYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMI----HAYDVAENWEKASAL 641

Query: 73  FQKMKGMERCKPNIVTYNILLRA-----------------------------------CA 97
           F +M+  +  +P+ +  + L+RA                                   C+
Sbjct: 642 FLEME-TDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFFEMVSACS 700

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
             R   ++  L K +  SI    I   N ++   GK+G I+ M  +  ++ ++  + +  
Sbjct: 701 LLREWREIIGLIKLMEPSISVVSIGLLNQLLHFLGKSGKIETMMKLFYKIVASGAEINFY 760

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           T+++L+ +      + K  +V + +  +  +P++  + S I ++ + R   +   V Q+ 
Sbjct: 761 TYSILLKNLLAAGNWRKYIEVLQWMEEAGLQPSVGMYRS-ISSFAQNRSGAEYAAVIQER 819

Query: 218 TAM 220
             M
Sbjct: 820 IGM 822


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 138/316 (43%), Gaps = 5/316 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  + + G+   A+ LF++M    C P    Y  LI A   +  K +AL      F
Sbjct: 267 YTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEAL----NLF 322

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +MK  + C+PN+ TY +L+    +   +D+   +  E+ E  L P + TYN ++D Y K
Sbjct: 323 NEMKE-KGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCK 381

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            GMI +   +L  M+SN C P+  T+N LI    K++   K   +   ++  K  P+L T
Sbjct: 382 EGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLIT 441

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS+I    K      A  +   M      P   TY   I        V  A  +FD + 
Sbjct: 442 YNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVK 501

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G         A+++ YC  G    A  L E   N    P+S TY +L +   K    +
Sbjct: 502 AKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMK 561

Query: 314 LVQKLLKRMEQNGIVP 329
               L+ +M   G+ P
Sbjct: 562 EASSLVAKMLTMGVKP 577



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 144/324 (44%), Gaps = 11/324 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  Y+ LI    +      A  +F  M   GC+ +   Y  LI    H   +A  + +A
Sbjct: 228 DTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLI----HGLCEAGRINEA 283

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACA-QARNVDQVNALFKELHESILAPDIYTYNGVM 128
           L  F  M   + C P + TY +L+ A +   R V+ +N LF E+ E    P+++TY  ++
Sbjct: 284 LKLFADMTE-DNCCPTVRTYTVLIYALSGSGRKVEALN-LFNEMKEKGCEPNVHTYTVLI 341

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D   K   + E   +LS M      P ++T+N LID Y K    D   ++   +  +   
Sbjct: 342 DGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCG 401

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAR 246
           P   T+N +I    K R   KA  +  KM   K +PS ITY  +I  +G C  +++  A 
Sbjct: 402 PNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLI--HGQCKVNDLESAY 459

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +   +++ G      T +  ++  C  G   EA  LF++    GV  +   Y  L   Y
Sbjct: 460 RLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGY 519

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K    ++   LL+RM  +  +PN
Sbjct: 520 CKVGKIDVAYSLLERMLNDACLPN 543



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 146/382 (38%), Gaps = 65/382 (17%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL--HTRDKAKALAKAL- 70
           Y+ LI  +   G+   A+ LF+EM+  GC P+   Y  LI      +  D+A+ +   + 
Sbjct: 302 YTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMS 361

Query: 71  ----------------GY---------FQKMKGMER--CKPNIVTYNILLRACAQARNVD 103
                           GY         F+ +  ME   C PN  TYN L+    + R V 
Sbjct: 362 EKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVH 421

Query: 104 QVNALFKELHESILAPDIYTYNGV-----------------------------------M 128
           +  AL  ++ E  L+P + TYN +                                   +
Sbjct: 422 KAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFI 481

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D   K G ++E  ++   +K+   K + + +  LID Y K    D    + + +++    
Sbjct: 482 DTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACL 541

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   T+N +I    K +   +A  +  KM  M   P+ +TY  +I           A ++
Sbjct: 542 PNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKV 601

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F+ +  LG    V T  A L AY   G+  E D +    +  G+ PD  TY +L   Y +
Sbjct: 602 FNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYAR 661

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
             +       LK M   G  P+
Sbjct: 662 LGLTHRAFDFLKCMVDTGCKPS 683



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 121/272 (44%), Gaps = 2/272 (0%)

Query: 69  ALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            L  F+KM   G  + KP +  YN +L + ++   +D++  ++ EL  + ++P+IYT+N 
Sbjct: 140 VLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNA 199

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++ Y K G + E E   S++      PD  T+  LI  + + +  D   +VF  +    
Sbjct: 200 MVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKG 259

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +    ++ ++I    +A    +A  +F  MT     P+  TY  +I           A 
Sbjct: 260 CQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEAL 319

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +F+E+ + G +  V T   +++  C      EA  +       G+ P   TY  L   Y
Sbjct: 320 NLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGY 379

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
            K  M +   ++L  ME N   PN R + E +
Sbjct: 380 CKEGMIDDAFEILDLMESNSCGPNTRTYNELI 411



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 142/335 (42%), Gaps = 13/335 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +  +   + D   YS  I  + K+G+   A  LF  ++  G + +  +Y ALI  +    
Sbjct: 464 LMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYC--- 520

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K   +  A    ++M   + C PN  TYN+L+    + + + + ++L  ++    + P 
Sbjct: 521 -KVGKIDVAYSLLERMLN-DACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPT 578

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TY  ++    K+G       V + M S   +PD+ T+   + +Y  +   ++++ V  
Sbjct: 579 VVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIA 638

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +      P L T+  +I  Y +  L  +A    + M      PS      +I       
Sbjct: 639 KMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIK------ 692

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL-LFENSHNMGVTPDSSTY 299
           N+S    + +  S++G D  VS +N++  A     L  E  L LFE     G T D S Y
Sbjct: 693 NLSHENRMKETRSEIGID-SVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIY 751

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
             L   + +    E  Q L+  M++ G+ P++  +
Sbjct: 752 GALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIY 786



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 135/330 (40%), Gaps = 40/330 (12%)

Query: 23  KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82
           K G    A    S++  +G  PD   Y +LI  H   R+K    A  +      KG   C
Sbjct: 206 KIGNVVEAELYASKIVQAGLHPDTFTYTSLILGH--CRNKGVDNAYEVFLIMPQKG---C 260

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           + N V+Y  L+    +A  +++   LF ++ E    P + TY  ++ A   +G   E  +
Sbjct: 261 QRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALN 320

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           + + MK   C+P++ T+ +LID   K    D+  ++   +      P++ T+N++I  Y 
Sbjct: 321 LFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYC 380

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           K  +   A  +   M +    P+  TY  +I   G C              K+ K M  +
Sbjct: 381 KEGMIDDAFEILDLMESNSCGPNTRTYNELIC--GLCKK-----------RKVHKAM--A 425

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
            LN MLE                      ++P   TY  L     K N  E   +LL  M
Sbjct: 426 LLNKMLER--------------------KLSPSLITYNSLIHGQCKVNDLESAYRLLSLM 465

Query: 323 EQNGIVPNKRFFLEALETFSSSLAGSQSGS 352
            +NG+VP++  +   ++T        ++G+
Sbjct: 466 NENGLVPDQWTYSVFIDTLCKEGRVEEAGT 495



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 116/244 (47%), Gaps = 7/244 (2%)

Query: 92  LLRACAQARNVDQVNALFKELH---ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           ++++C    +V  V  +F++++   E    P +  YN ++ +  K  +I EM++V   + 
Sbjct: 127 MIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELL 186

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           +NQ  P+I TFN +++ Y K     + E     ++ +   P   T+ S+I+ + + +   
Sbjct: 187 NNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVD 246

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNA 266
            A  VF  M       + ++Y  +I  +G C+   ++ A ++F ++++      V T   
Sbjct: 247 NAYEVFLIMPQKGCQRNEVSYTNLI--HGLCEAGRINEALKLFADMTEDNCCPTVRTYTV 304

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           ++ A   +G   EA  LF      G  P+  TY +L     K N  +  +K+L  M + G
Sbjct: 305 LIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKG 364

Query: 327 IVPN 330
           ++P+
Sbjct: 365 LIPS 368



 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 80/201 (39%), Gaps = 26/201 (12%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI-------------- 53
           + D   Y+ LI    + G T  A      M ++GC+P   + + LI              
Sbjct: 646 LPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRS 705

Query: 54  ------TAHLHTRDKAKALAKALGYFQKMKGMER-----CKPNIVTYNILLRACAQARNV 102
                  +++++ D A  + K L Y   +K  E+     C  ++  Y  L+    Q   +
Sbjct: 706 EIGIDSVSNVNSVDIAD-VWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERL 764

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           ++   L   + E  ++P    YN ++D   K G+  E   ++  M  N   P + ++ LL
Sbjct: 765 EEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLL 824

Query: 163 IDSYGKRQAFDKMEQVFKSLM 183
           +       + +K + VF  L+
Sbjct: 825 VCGLYIEGSNEKAKAVFHGLL 845


>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
 gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
          Length = 1429

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 149/326 (45%), Gaps = 10/326 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ ++ V  + G+   A  L   MR  GC PD   +N LI A L +      L   L  
Sbjct: 227 VYNAMMGVYSRSGKFSKAQELLDAMRQRGCVPDLISFNTLINARLKSGGLTPNLVVELLD 286

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +  G+   +P+ +TYN LL AC++  N++    +F+++      PD++TYN ++  YG
Sbjct: 287 MVRNSGL---RPDAITYNTLLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNAMISVYG 343

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + G+  E E +   ++     PD +T+N L+ ++ + +  +K+++V++ +          
Sbjct: 344 RCGLAAEAERLFIELELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEM 403

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMK----YTPSFITYECIITMYGYCDNVSRAREI 248
           T+N++I  YGK   QG+ +   Q    MK      P  ITY  +I   G  +    A  +
Sbjct: 404 TYNTIIHMYGK---QGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAAL 460

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             E+  +G    + T +A++  Y   G   EA+  F      G  PD+  Y ++     +
Sbjct: 461 MSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLR 520

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
            N       L + M  +G  P+   +
Sbjct: 521 GNETRKAWVLYRDMISDGHTPSHSLY 546



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 163/336 (48%), Gaps = 21/336 (6%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSV------YNALITAHL 57
           + W+  +  + + ++ V+G+  Q  LA+ +F+       R +P+V      YNA++   +
Sbjct: 184 RHWHSPNARMVAAILGVLGRWNQESLAVEIFT-------RAEPTVGDRVQVYNAMMG--V 234

Query: 58  HTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV--DQVNALFKELHES 115
           ++R    + A+ L    + +G   C P+++++N L+ A  ++  +  + V  L   +  S
Sbjct: 235 YSRSGKFSKAQELLDAMRQRG---CVPDLISFNTLINARLKSGGLTPNLVVELLDMVRNS 291

Query: 116 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 175
            L PD  TYN ++ A  ++  ++    V   M++++C+PD+ T+N +I  YG+     + 
Sbjct: 292 GLRPDAITYNTLLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEA 351

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
           E++F  L      P   T+NS++  + + R   K + V+Q+M  M +    +TY  II M
Sbjct: 352 ERLFIELELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHM 411

Query: 236 YGYCDNVSRAREIFDELSKL-GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
           YG    +  A +++ ++  L G++    T   ++++        EA  L     ++G+ P
Sbjct: 412 YGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAALMSEMLDVGIKP 471

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              TY  L   Y KA  +E  +     M ++G  P+
Sbjct: 472 TLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPD 507



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 154/325 (47%), Gaps = 5/325 (1%)

Query: 3    KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
            +Q     D   ++ L++   + G    A  +F+ M   G  P     N L+ A L    +
Sbjct: 779  RQSGRTPDLKTWNSLMSAYAECGCYERARAIFNTMMRDGPSPTVESINKLLHA-LCVDGR 837

Query: 63   AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
             + L   +   Q M G +  K +I+   ++L A A+A N+ +VN ++  +  +   P I 
Sbjct: 838  LEELYVVVEELQDM-GFKISKSSIL---LMLDAFARAGNIFEVNKIYSSMKAAGYLPTIR 893

Query: 123  TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
             Y  +++   K   +++ E ++S M+    K ++  +N ++  Y   + + K  QV++ +
Sbjct: 894  LYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTVIEDYKKTVQVYQRI 953

Query: 183  MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
              S  +P   T+N++II Y + R   +   + Q+M  +   P   TY+ +I+ +G    +
Sbjct: 954  KESGLEPDETTYNTLIIMYCRDRRPEEGYSLMQQMRNLGLDPKLDTYKSLISAFGKQKCL 1013

Query: 243  SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             +A ++F+EL   G  +  S  + M++    +G  ++A+ L +   N G+ P  +T  LL
Sbjct: 1014 EQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLL 1073

Query: 303  YKAYTKANMKELVQKLLKRMEQNGI 327
              +Y+ +   +  +K+L  ++   +
Sbjct: 1074 MVSYSSSGNPQEAEKVLSNLKNTEV 1098



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/360 (18%), Positives = 153/360 (42%), Gaps = 31/360 (8%)

Query: 6    WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL-----HTR 60
            W    + +Y  L+           A  +FSE+R SGC P  SV  +++  +       T 
Sbjct: 676  WCFGGSTMYETLLHCCVANEHYAEASQVFSELRLSGCEPSESVCKSMVVVYCKLGFPETA 735

Query: 61   DKAKALAKALGY--------------FQKMKGMERCK------------PNIVTYNILLR 94
             +    A+  G+              + K+K  ++ +            P++ T+N L+ 
Sbjct: 736  YQVVNQAETKGFHFACSPMYTDIIEAYGKLKLWQKAESVVGNLRQSGRTPDLKTWNSLMS 795

Query: 95   ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
            A A+    ++  A+F  +     +P + + N ++ A   +G ++E+  V+  ++    K 
Sbjct: 796  AYAECGCYERARAIFNTMMRDGPSPTVESINKLLHALCVDGRLEELYVVVEELQDMGFKI 855

Query: 155  DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
               +  L++D++ +     ++ +++ S+  +   PT+  +  MI    K +    AE + 
Sbjct: 856  SKSSILLMLDAFARAGNIFEVNKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMV 915

Query: 215  QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
             +M    +      +  ++ MY   ++  +  +++  + + G +   +T N ++  YC +
Sbjct: 916  SEMEEANFKVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLIIMYCRD 975

Query: 275  GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
              P E   L +   N+G+ P   TYK L  A+ K    E  ++L + +   G+  ++ F+
Sbjct: 976  RRPEEGYSLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFY 1035



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 141/325 (43%), Gaps = 7/325 (2%)

Query: 6    WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA 65
            ++ A + +Y+ +I   GK    + A  +   +R SG  PD   +N+L++A+     +   
Sbjct: 747  FHFACSPMYTDIIEAYGKLKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYA----ECGC 802

Query: 66   LAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTY 124
              +A   F  M   +   P + + N LL A C   R ++++  + +EL +        + 
Sbjct: 803  YERARAIFNTMM-RDGPSPTVESINKLLHALCVDGR-LEELYVVVEELQDMGFKISKSSI 860

Query: 125  NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
              ++DA+ + G I E+  + S MK+    P I  + ++I+   K +     E +   +  
Sbjct: 861  LLMLDAFARAGNIFEVNKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEE 920

Query: 185  SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
            +  K  L  +NSM+  Y       K   V+Q++      P   TY  +I MY        
Sbjct: 921  ANFKVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLIIMYCRDRRPEE 980

Query: 245  AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
               +  ++  LG D K+ T  +++ A+       +A+ LFE   + G+  D S Y  + K
Sbjct: 981  GYSLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMK 1040

Query: 305  AYTKANMKELVQKLLKRMEQNGIVP 329
                +      +KLL+ M+  GI P
Sbjct: 1041 ISRDSGSDSKAEKLLQMMKNAGIEP 1065



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 132/308 (42%), Gaps = 37/308 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA---- 65
           D   Y+ +I+V G+ G    A  LF E+   G  PD   YN+L+ A    R+  K     
Sbjct: 331 DLWTYNAMISVYGRCGLAAEAERLFIELELKGFSPDAVTYNSLLYAFARERNTEKVKEVY 390

Query: 66  ---------------------------LAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
                                      L  AL  ++ MKG+    P+ +TY +L+ +  +
Sbjct: 391 QQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGK 450

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
           A    +  AL  E+ +  + P + TY+ ++  Y K G  +E E   S M  +  KPD + 
Sbjct: 451 ANRSVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLA 510

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +++++D   +     K   +++ ++     P+   +  MI+   K       +   + M 
Sbjct: 511 YSVMLDVLLRGNETRKAWVLYRDMISDGHTPSHSLYELMILGLMKENRSDDVQKTIRDME 570

Query: 219 AM-KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
            +    P  I+    + + G C +++ AR++   ++  G +++  TL ++L +Y  +G  
Sbjct: 571 ELCGMNPLEISS---VLVKGECFDLA-ARQLKVAITN-GYELENDTLLSILGSYSSSGRH 625

Query: 278 TEADLLFE 285
           +EA  L E
Sbjct: 626 SEAFELLE 633



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 111/245 (45%), Gaps = 2/245 (0%)

Query: 83   KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
            K  +  +N +L+      +  +   +++ + ES L PD  TYN ++  Y ++   +E  S
Sbjct: 924  KVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLIIMYCRDRRPEEGYS 983

Query: 143  VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
            ++ +M++    P + T+  LI ++GK++  ++ EQ+F+ L+    K     +++M+    
Sbjct: 984  LMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISR 1043

Query: 203  KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
             +    KAE + Q M      P+  T   ++  Y    N   A ++   L     ++   
Sbjct: 1044 DSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKNTEVELTTL 1103

Query: 263  TLNAMLEAYCMN-GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
              +++++AY  +    +  + L E     G+ PD   +    +A + +  K  V  LLK 
Sbjct: 1104 PYSSVIDAYLRSKDYKSGIERLLEMKKE-GLEPDHRIWTCFVRAASFSKEKSEVMLLLKA 1162

Query: 322  MEQNG 326
            ++  G
Sbjct: 1163 LQDIG 1167



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/287 (19%), Positives = 129/287 (44%), Gaps = 9/287 (3%)

Query: 7    YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
            Y+    +Y  +I ++ K  + R A  + SEM  +  + + +++N+++  +    D  K +
Sbjct: 888  YLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTVIEDYKKTV 947

Query: 67   AKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
                  +Q++K  G+E   P+  TYN L+    + R  ++  +L +++    L P + TY
Sbjct: 948  Q----VYQRIKESGLE---PDETTYNTLIIMYCRDRRPEEGYSLMQQMRNLGLDPKLDTY 1000

Query: 125  NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
              ++ A+GK   +++ E +   + S   K D   ++ ++       +  K E++ + + +
Sbjct: 1001 KSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKN 1060

Query: 185  SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
            +  +PTL T + ++++Y  +    +AE V   +   +   + + Y  +I  Y    +   
Sbjct: 1061 AGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKNTEVELTTLPYSSVIDAYLRSKDYKS 1120

Query: 245  AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
              E   E+ K G +         + A   +   +E  LL +   ++G
Sbjct: 1121 GIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKSEVMLLLKALQDIG 1167


>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
          Length = 977

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 149/312 (47%), Gaps = 5/312 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q  +  D   Y+ ++  +G+  Q      L  EM   GC+P+   YN LI    H+ 
Sbjct: 471 LKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLI----HSY 526

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +A  L +A+  F +M+    CKP+ VTY  L+   A+A  +D    +++ +    L+PD
Sbjct: 527 GRANYLNEAMNVFNQMQ-EAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPD 585

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            +TY+ +++  GK G +     +   M    C P+++T+N+++D + K + +    ++++
Sbjct: 586 TFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYR 645

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            + ++  +P   T++ ++   G      +AE VF +M    + P    Y  ++ ++G   
Sbjct: 646 DMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAG 705

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           NV +A + +  +   G    V T N++L  +       EA  L +N   +G+ P   TY 
Sbjct: 706 NVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYT 765

Query: 301 LLYKAYTKANMK 312
           LL    T    K
Sbjct: 766 LLLSCCTDGRSK 777



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 120/275 (43%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             ALG+F  +K     K +  TY  ++    +A+    +N L  E+      P+  TYN 
Sbjct: 462 GNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNR 521

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++ +YG+   + E  +V ++M+   CKPD +T+  LID + K    D    +++ +    
Sbjct: 522 LIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGG 581

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P   T++ +I   GKA     A  +F +M     TP+ +TY  ++ ++    N   A 
Sbjct: 582 LSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNAL 641

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           +++ ++   G +    T + ++E     G   EA+ +F         PD   Y LL   +
Sbjct: 642 KLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLW 701

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            KA   E   +  + M   G+ PN       L TF
Sbjct: 702 GKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTF 736


>gi|30688764|ref|NP_850356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75158748|sp|Q8RWS8.1|PP199_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g41720; AltName: Full=Protein EMBRYO DEFECTIVE 2654
 gi|20268762|gb|AAM14084.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|21436141|gb|AAM51317.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330254931|gb|AEC10025.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 164/373 (43%), Gaps = 32/373 (8%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH---- 56
           M+ Q+ Y A   IY+ +I +  +      A  LF EM+   C+PD   Y+ALI AH    
Sbjct: 133 MKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAG 192

Query: 57  -----------------LHTRDKAKALAKALGYFQKMK-GMERCK--------PNIVTYN 90
                              +R     L  A G     +  +E CK        P++VT+N
Sbjct: 193 QWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHN 252

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM--K 148
           I+L A    R   +  + F+ +  + + PD  T+N ++    K G   +   + + M  K
Sbjct: 253 IVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREK 312

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
             +C+PD++TF  ++  Y  +   +    VF++++    KP + ++N+++  Y    + G
Sbjct: 313 RAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSG 372

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A  V   +      P  ++Y C++  YG      +A+E+F  + K  +   V T NA++
Sbjct: 373 TALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALI 432

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           +AY  NG   EA  +F      G+ P+  +   L  A +++  K  V  +L   +  GI 
Sbjct: 433 DAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGIN 492

Query: 329 PNKRFFLEALETF 341
            N   +  A+ ++
Sbjct: 493 LNTAAYNSAIGSY 505



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 165/362 (45%), Gaps = 50/362 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRN--SGCRPDPSVYNALITAHLHTRDKAKALA 67
           DT  ++ +I  + K GQ+  A+ LF+ MR   + CRPD   + +++  HL++        
Sbjct: 282 DTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIM--HLYSVKGEIENC 339

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A+  F+ M   E  KPNIV+YN L+ A A         ++  ++ ++ + PD+ +Y  +
Sbjct: 340 RAV--FEAMVA-EGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCL 396

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-------QAFDKMEQ--- 177
           +++YG++    + + V   M+  + KP+++T+N LID+YG         + F +MEQ   
Sbjct: 397 LNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGI 456

Query: 178 ---------VFKSLMHSKEKPTLPT----------------FNSMIINYGKARLQGKAEY 212
                    +  +   SK+K  + T                +NS I +Y  A    KA  
Sbjct: 457 KPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIA 516

Query: 213 VFQKMTAMKYTPSFITYECIIT----MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           ++Q M   K     +T+  +I+    M  Y + +S  +E+ D    L K++  S L    
Sbjct: 517 LYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLC--- 573

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
            AY   G  TEA+ +F      G  PD   Y  +  AY  +       +L   ME NGI 
Sbjct: 574 -AYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIE 632

Query: 329 PN 330
           P+
Sbjct: 633 PD 634



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 124/275 (45%), Gaps = 6/275 (2%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C  N + YN+++R  A+   VDQ   LF E+ +    PD  TY+ +++A+G+ G  +   
Sbjct: 140 CARNDI-YNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAM 198

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           +++  M      P   T+N LI++ G    + +  +V K +  +   P L T N ++  Y
Sbjct: 199 NLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAY 258

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK- 260
              R   KA   F+ M   K  P   T+  II         S+A ++F+ + +   + + 
Sbjct: 259 KSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRP 318

Query: 261 -VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            V T  +++  Y + G       +FE     G+ P+  +Y  L  AY    M      +L
Sbjct: 319 DVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVL 378

Query: 320 KRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAK 354
             ++QNGI+P+   +   L ++  S    Q G AK
Sbjct: 379 GDIKQNGIIPDVVSYTCLLNSYGRS---RQPGKAK 410



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 125/283 (44%), Gaps = 5/283 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ   I D   Y+ L+   G+  Q   A  +F  MR    +P+   YNALI A+      
Sbjct: 382 KQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAY----GS 437

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              LA+A+  F++M+  +  KPN+V+   LL AC++++    V+ +        +  +  
Sbjct: 438 NGFLAEAVEIFRQME-QDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTA 496

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            YN  + +Y     +++  ++   M+  + K D +TF +LI    +   + +     K +
Sbjct: 497 AYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEM 556

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                  T   ++S++  Y K     +AE +F +M      P  I Y  ++  Y   +  
Sbjct: 557 EDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKW 616

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
            +A E+F E+   G +      +A++ A+   G P+   +L +
Sbjct: 617 GKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMD 659


>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 886

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 149/312 (47%), Gaps = 5/312 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q  +  D   Y+ ++  +G+  Q      L  EM   GC+P+   YN LI    H+ 
Sbjct: 354 LKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLI----HSY 409

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +A  L +A+  F +M+    CKP+ VTY  L+   A+A  +D    +++ +    L+PD
Sbjct: 410 GRANYLNEAMNVFNQMQ-EAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPD 468

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            +TY+ +++  GK G +     +   M    C P+++T+N+++D + K + +    ++++
Sbjct: 469 TFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYR 528

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            + ++  +P   T++ ++   G      +AE VF +M    + P    Y  ++ ++G   
Sbjct: 529 DMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAG 588

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           NV +A + +  +   G    V T N++L  +       EA  L +N   +G+ P   TY 
Sbjct: 589 NVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYT 648

Query: 301 LLYKAYTKANMK 312
           LL    T    K
Sbjct: 649 LLLSCCTDGRSK 660



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 120/275 (43%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             ALG+F  +K     K +  TY  ++    +A+    +N L  E+      P+  TYN 
Sbjct: 345 GNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNR 404

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++ +YG+   + E  +V ++M+   CKPD +T+  LID + K    D    +++ +    
Sbjct: 405 LIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGG 464

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P   T++ +I   GKA     A  +F +M     TP+ +TY  ++ ++    N   A 
Sbjct: 465 LSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNAL 524

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           +++ ++   G +    T + ++E     G   EA+ +F         PD   Y LL   +
Sbjct: 525 KLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLW 584

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            KA   E   +  + M   G+ PN       L TF
Sbjct: 585 GKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTF 619


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 152/325 (46%), Gaps = 12/325 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R   A+   YS L+  + K  +   A+ L   M   GC P    YN++IT       +A
Sbjct: 102 HRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFC----RA 157

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           + + +A G+ ++M   E C P+I+TY  L+    ++R+V +   L  E+      PDI T
Sbjct: 158 RRVDEAHGFMEQMVA-EGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVT 216

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ V+D   K G +++   +   M    C P  IT+N LI  Y +    D+  ++   ++
Sbjct: 217 YSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMV 273

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN-- 241
             K  P + T+ +++  + K      A  +FQ+M A K +P  +T+  ++   G C    
Sbjct: 274 DDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVD--GLCGEGR 331

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +  A E+ +E+++ G    + T N +++ YC      +A+ L  +  + G  P++ TY +
Sbjct: 332 MEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNI 391

Query: 302 LYKAYTKANMKELVQKLLKRMEQNG 326
           L     +A   +   + L ++   G
Sbjct: 392 LVAGCCRAGRTDQALQYLDQLNSEG 416



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 143/323 (44%), Gaps = 10/323 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI    K       + L  E+   G  PD   Y+ +I        KA  L  A
Sbjct: 178 DIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLC----KAGRLRDA 233

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +  F++M     C P  +TYN L+    +A ++D+   L  ++ +   APD+ TY  +M 
Sbjct: 234 VDIFEEMS----CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMS 289

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A+ K G + +   +  +M +N+  PD++TF  L+D        +   ++ + +      P
Sbjct: 290 AFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPP 349

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           T+ T+N ++  Y KA    KAE +     +  + P+ +TY  ++          +A +  
Sbjct: 350 TIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYL 409

Query: 250 DELSKLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           D+L+  G      V+    +L+A C +G   +A   +E     G  P ++T+  +  A  
Sbjct: 410 DQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALC 469

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           KA+  +   +LL+ M + G  P 
Sbjct: 470 KAHQPQQAHELLEEMIKYGHTPG 492



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 136/304 (44%), Gaps = 14/304 (4%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CKPNIVT 88
           A  L  EM + G   +   Y+AL+        K + L +A+   + M   ER C P +VT
Sbjct: 93  ARELVEEMLHRGMAANAITYSALVDGLC----KCERLDEAVALVETMA--ERGCAPTVVT 146

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN ++    +AR VD+ +   +++      PDI TY  ++  + K+  +     +L  + 
Sbjct: 147 YNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVT 206

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
                PDI+T++ +ID   K         +F+ +  +   PT  T+NS+I  Y +A    
Sbjct: 207 RRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCA---PTAITYNSLIGGYCRAGDMD 263

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL--SKLGKDMKVSTLNA 266
           +A  +  KM   K  P  +TY  +++ +     +  A E+F ++  +KL  D  V T  +
Sbjct: 264 EAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPD--VVTFTS 321

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           +++  C  G   +A  L E     G  P   TY  +   Y KAN     ++L+      G
Sbjct: 322 LVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRG 381

Query: 327 IVPN 330
            VPN
Sbjct: 382 FVPN 385



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 144/322 (44%), Gaps = 12/322 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R +  D   YS +I  + K G+ R A+ +F EM    C P    YN+LI  +    D  
Sbjct: 207 RRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMD 263

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           +A+ + LG   KM   ++C P++VTY  L+ A  +   +D    LF+++  + L+PD+ T
Sbjct: 264 EAI-RLLG---KMVD-DKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVT 318

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           +  ++D     G +++   +L  +    C P I T+N ++D Y K     K E++     
Sbjct: 319 FTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFR 378

Query: 184 HSKEKPTLPTFNSMIINYGKA-RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN- 241
                P   T+N ++    +A R     +Y+ Q  +     P+ +    II +   C + 
Sbjct: 379 SRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAII-LDALCRDG 437

Query: 242 -VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
               A + ++E+ + G     +T   ++ A C    P +A  L E     G TP   T  
Sbjct: 438 RTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCD 497

Query: 301 LLYKAYTKANMKELVQKLLKRM 322
            +  AY +A M +   +L   +
Sbjct: 498 AVVSAYCRAGMIQKADELASEL 519



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 151/337 (44%), Gaps = 16/337 (4%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T +++ +I  + + G+ R A+ ++ +M N    PD   Y  L+    H   KA+ L  A+
Sbjct: 5   TLLHNVVIGGLCRAGRLRHALGVYRQM-NDAHPPDFLTYTKLV----HGLSKARRLRDAV 59

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
              Q+M    R  P+  T  +++++      VD    L +E+    +A +  TY+ ++D 
Sbjct: 60  QVLQEMVS-ARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDG 118

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             K   + E  +++  M    C P ++T+N +I  + + +  D+     + ++     P 
Sbjct: 119 LCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPD 178

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           + T+ ++I  + K+R  G+   +  ++T   +TP  +TY  +I   G C    R R+  D
Sbjct: 179 IITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVID--GLC-KAGRLRDAVD 235

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
              ++       T N+++  YC  G   EA  L     +    PD  TY  L  A+ K  
Sbjct: 236 IFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMG 295

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
             +   +L ++M  N + P+       + TF+S + G
Sbjct: 296 RLDDAYELFQQMVANKLSPD-------VVTFTSLVDG 325


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 149/323 (46%), Gaps = 9/323 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ LI  +  +G+ + A+ LF+EM  SG  P+   YN +I        K      A
Sbjct: 165 DAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLC----KNGNTIMA 220

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +  F+KM+   R KPN+VTYN ++ +  + R V++      E+ +  + PD+ TYN ++ 
Sbjct: 221 VRVFRKME-QNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILH 279

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +   G + E   +   M      PD +TFN+L+D   K     +   V +++     +P
Sbjct: 280 GFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEP 339

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRARE 247
              T+N+++  Y       +A  V   M      P+  +Y  +I   GYC +  ++ A+ 
Sbjct: 340 NAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILIN--GYCKSKRMNEAKR 397

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +  E+S+        T + +++  C  G P EA  LF+   + G+ PD   Y +L   + 
Sbjct: 398 LLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFC 457

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           K    +   KLLK M +  I PN
Sbjct: 458 KHGHLDEALKLLKEMHERRIKPN 480



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 155/322 (48%), Gaps = 15/322 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + K G T +A+ +F +M  +  +P+   YN +I +      K + + +A+ + 
Sbjct: 204 YNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLC----KDRLVNEAVEFL 259

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  +G+    P++VTYN +L        +++   LFKE+    + PD  T+N ++D  
Sbjct: 260 SEMVDRGI---PPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGL 316

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K GM+ E   V   M     +P+  T+N L+D Y      D+  +V   ++     P L
Sbjct: 317 CKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNL 376

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE---I 248
            ++N +I  Y K++   +A+ +  +M+    TP  +TY  +  M G C  V R RE   +
Sbjct: 377 SSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTL--MQGLC-QVGRPREALNL 433

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F E+   G    +   + +L+ +C +G   EA  L +  H   + P+   Y +L +    
Sbjct: 434 FKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFI 493

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
           A   E+ ++L  ++  +GI P+
Sbjct: 494 AGKLEVAKELFSKLSADGIRPD 515



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 148/329 (44%), Gaps = 13/329 (3%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           LI  + +      A+ +  +M   G +PD   +N LI   L    K K   +A+G F +M
Sbjct: 137 LINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLING-LCNEGKIK---EAVGLFNEM 192

Query: 77  --KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
              G E   PN+++YN ++    +  N      +F+++ ++   P++ TYN ++D+  K+
Sbjct: 193 VWSGHE---PNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKD 249

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
            ++ E    LS M      PD++T+N ++  +      ++  ++FK ++     P   TF
Sbjct: 250 RLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTF 309

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDEL 252
           N ++    K  +  +A  V + MT     P+  TY  +  M GYC  + +  A ++   +
Sbjct: 310 NILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNAL--MDGYCLHNQMDEAIKVLGIM 367

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G    +S+ N ++  YC +    EA  L        +TPD+ TY  L +   +    
Sbjct: 368 IGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRP 427

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETF 341
                L K M  +G++P+   +   L+ F
Sbjct: 428 REALNLFKEMCSSGLLPDLMAYSILLDGF 456



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 144/324 (44%), Gaps = 19/324 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + K      A+   SEM + G  PD   YN +    LH       L +A   F
Sbjct: 239 YNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTI----LHGFCSLGQLNEATRLF 294

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M G     P+ VT+NIL+    +   V +   + + + E    P+ YTYN +MD Y  
Sbjct: 295 KEMVG-RNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCL 353

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +  + E   VL  M    C P++ ++N+LI+ Y K +  ++ +++   +      P   T
Sbjct: 354 HNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVT 413

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +++++    +     +A  +F++M +    P  + Y   I + G+C +        DE  
Sbjct: 414 YSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYS--ILLDGFCKHGH-----LDEAL 466

Query: 254 KLGKDMKVSTL--NAMLEAYCMNGLPTEADL-----LFENSHNMGVTPDSSTYKLLYKAY 306
           KL K+M    +  N +L    + G+     L     LF      G+ PD  TY ++ K  
Sbjct: 467 KLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGL 526

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K  + +   +  ++ME +G +P+
Sbjct: 527 LKEGLSDEAYEFFRKMEDDGFLPD 550



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 121/250 (48%), Gaps = 8/250 (3%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           N+ + N+L+    +  +VD   ++  ++ +  + PD  T+N +++     G IKE   + 
Sbjct: 130 NVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLF 189

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
           + M  +  +P++I++N +I+   K        +VF+ +  ++ KP + T+N++I +  K 
Sbjct: 190 NEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKD 249

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDM--K 260
           RL  +A     +M      P  +TY  I  ++G+C    ++ A  +F E+  +G+++   
Sbjct: 250 RLVNEAVEFLSEMVDRGIPPDVVTYNTI--LHGFCSLGQLNEATRLFKEM--VGRNVMPD 305

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
             T N +++  C  G+ +EA  + E     G  P++ TY  L   Y   N  +   K+L 
Sbjct: 306 TVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLG 365

Query: 321 RMEQNGIVPN 330
            M   G  PN
Sbjct: 366 IMIGKGCAPN 375



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 5/223 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ +   M   GC P+ S YN LI  +     K+K + +A     +M   +   P+ VTY
Sbjct: 360 AIKVLGIMIGKGCAPNLSSYNILINGYC----KSKRMNEAKRLLSEMSE-KNLTPDTVTY 414

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           + L++   Q     +   LFKE+  S L PD+  Y+ ++D + K+G + E   +L  M  
Sbjct: 415 STLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHE 474

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
            + KP+II + +LI         +  +++F  L     +P + T+N MI    K  L  +
Sbjct: 475 RRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDE 534

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           A   F+KM    + P   +Y  II  +    + S A ++ DE+
Sbjct: 535 AYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEM 577



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 117/266 (43%), Gaps = 1/266 (0%)

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           ++  AL  F +M  M   +P++V +   L + A+ +      +L  ++    +  ++Y+ 
Sbjct: 76  SIDDALTSFYRMVRMNP-RPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSL 134

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N +++   +   +    SV+ +M     +PD ITFN LI+         +   +F  ++ 
Sbjct: 135 NVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVW 194

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
           S  +P + ++N++I    K      A  VF+KM   +  P+ +TY  II        V+ 
Sbjct: 195 SGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNE 254

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A E   E+   G    V T N +L  +C  G   EA  LF+      V PD+ T+ +L  
Sbjct: 255 AVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVD 314

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
              K  M    + + + M + G  PN
Sbjct: 315 GLCKEGMVSEARCVSETMTEKGAEPN 340



 Score = 41.2 bits (95), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 4/200 (2%)

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
           RM     +P ++ F   + S  K++ +     +   +        + + N +I    +  
Sbjct: 86  RMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLS 145

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVST 263
               A  V  KM  +   P  IT+  +I   G C+   +  A  +F+E+   G +  V +
Sbjct: 146 HVDFAVSVMGKMFKLGIQPDAITFNTLIN--GLCNEGKIKEAVGLFNEMVWSGHEPNVIS 203

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N ++   C NG    A  +F         P+  TY  +  +  K  +     + L  M 
Sbjct: 204 YNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMV 263

Query: 324 QNGIVPNKRFFLEALETFSS 343
             GI P+   +   L  F S
Sbjct: 264 DRGIPPDVVTYNTILHGFCS 283


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 157/366 (42%), Gaps = 42/366 (11%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R  + D   +S LI V+ + G    A+  F EM  SG  PD  +Y  LI        + 
Sbjct: 390 RRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFC----RN 445

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            AL+ AL    +M     C  ++VTYN  L    + +     + LF E+ E  + PD YT
Sbjct: 446 GALSDALKMRDEMLA-RGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYT 504

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-------RQAFDKME 176
           +  ++  Y K+G + +  ++   M     KPD +T+N LID + K       ++ +D M 
Sbjct: 505 FTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMI 564

Query: 177 Q----------------------------VFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           +                            +   ++    +P L T N++I  Y ++    
Sbjct: 565 RKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMP 624

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           KA     KM +    P   +Y  +I  Y    N+ +A  + +E+ K G    + T N +L
Sbjct: 625 KAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLIL 684

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKRMEQNGI 327
             +C  G   EA+ +      +G+ PD +TY  L   + ++ NMKE   +    M Q G+
Sbjct: 685 NGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAF-RFHDEMLQRGL 743

Query: 328 VPNKRF 333
           VP+ RF
Sbjct: 744 VPDDRF 749



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 144/342 (42%), Gaps = 12/342 (3%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           +KL+  + + G   LA  ++ E+   G   +    N ++ A      K +     + +  
Sbjct: 226 NKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALC----KDRKFENVMFFLS 281

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
            M+G +    +IVTYN L+ A  +   V++   L        + P + TYN ++    K 
Sbjct: 282 DMEG-KGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKI 340

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G     + VL  M      P+  T+N L+    +R    + +++F  +      P L +F
Sbjct: 341 GKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSF 400

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDEL 252
           +S+I    +     +A   F++M      P  + Y  +I   G+C N  +S A ++ DE+
Sbjct: 401 SSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILID--GFCRNGALSDALKMRDEM 458

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G  M V T N  L   C   +  +AD+LF      G+ PD  T+  L + Y K    
Sbjct: 459 LARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNM 518

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAK 354
           +    L + M +  + P+K  +   ++ F  +    + G AK
Sbjct: 519 DKALNLFEAMVRTNLKPDKVTYNTLIDGFCKA---GEMGRAK 557



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 124/261 (47%), Gaps = 5/261 (1%)

Query: 48  VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNA 107
           +Y+ L+  ++    +AK L +    FQ ++  +    +I   N LL    +   VD    
Sbjct: 189 IYDLLVRTYV----QAKKLREGSEAFQILR-RKGVSVSINACNKLLGGLVRTGWVDLAWE 243

Query: 108 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
           ++ E+    +  ++YT N +++A  K+   + +   LS M+      DI+T+N LI++Y 
Sbjct: 244 IYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYC 303

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
           +    ++  Q+  S      +P L T+N+++    K     +A+ V  +M  +  TP+  
Sbjct: 304 REGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAA 363

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           TY  ++      DN+  A+EIFDE+S+ G    + + ++++     NG   +A + F   
Sbjct: 364 TYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREM 423

Query: 288 HNMGVTPDSSTYKLLYKAYTK 308
              G+ PD+  Y +L   + +
Sbjct: 424 ERSGIVPDNVIYTILIDGFCR 444



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 131/323 (40%), Gaps = 21/323 (6%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
            M+  S+M   G   D   YN LI A+       +A  + L  F   +GME   P ++TY
Sbjct: 276 VMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAF-QLLNSFSS-RGME---PGLLTY 330

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           N +L    +    D+   +  E+ +  L P+  TYN ++    +   I E + +   M  
Sbjct: 331 NAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSR 390

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK------PTLPTFNSMIINYGK 203
               PD+++F+ LI    +         ++++LMH +E       P    +  +I  + +
Sbjct: 391 RGVLPDLVSFSSLIGVLARNG------HLYQALMHFREMERSGIVPDNVIYTILIDGFCR 444

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKV 261
                 A  +  +M A       +TY   +   G C     + A  +F+E+ + G     
Sbjct: 445 NGALSDALKMRDEMLARGCFMDVVTYNTFLN--GLCKKKMFADADMLFNEMVERGMVPDF 502

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T   ++  YC +G   +A  LFE      + PD  TY  L   + KA      ++L   
Sbjct: 503 YTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDD 562

Query: 322 MEQNGIVPNKRFFLEALETFSSS 344
           M +  I+P+   +   L  F SS
Sbjct: 563 MIRKDIIPDHISYGTVLNGFCSS 585



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/247 (20%), Positives = 106/247 (42%), Gaps = 41/247 (16%)

Query: 87  VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 146
           + Y++L+R   QA+ + + +  F+ L    ++  I   N ++    + G +     +   
Sbjct: 188 LIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGE 247

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTFNSMIINYGKAR 205
           +     + ++ T N+++++  K + F+ +   F S M  K     + T+N++I  Y +  
Sbjct: 248 VVRGGIELNVYTLNIMVNALCKDRKFENV-MFFLSDMEGKGVFADIVTYNTLINAYCREG 306

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK-DMKVSTL 264
           L  +A  +    ++    P  +TY  I  +YG C              K+GK D     L
Sbjct: 307 LVEEAFQLLNSFSSRGMEPGLLTYNAI--LYGLC--------------KIGKYDRAKDVL 350

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK-LLYKAYTKANMKELVQKLLKRME 323
             ML+                    +G+TP+++TY  LL +   + N+ E  Q++   M 
Sbjct: 351 IEMLQ--------------------LGLTPNAATYNTLLVEICRRDNILE-AQEIFDEMS 389

Query: 324 QNGIVPN 330
           + G++P+
Sbjct: 390 RRGVLPD 396


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 156/350 (44%), Gaps = 29/350 (8%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI----------TAHLHT 59
           D+  YS LI    K    + A  L  EM   G  P  +VYN +I          +A +H 
Sbjct: 32  DSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHY 91

Query: 60  RDKAKALAKA-LGYFQKMKGMER------------------CKPNIVTYNILLRACAQAR 100
           RD  +  A + + Y   +  + +                  C PN+VTYN L+    +  
Sbjct: 92  RDMQRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLG 151

Query: 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
           N+D+   LF ++ E+  +PD++TYN ++D Y K    ++   +L  M    C+P+ IT+N
Sbjct: 152 NMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYN 211

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
            L+DS  K   +     + + ++    KP+  TFN MI  + K      A  +FQ MT  
Sbjct: 212 TLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDR 271

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
              P   TY  +I+     + +  AR++ + +++ G    V T N+++   C      EA
Sbjct: 272 GCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEA 331

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             ++E   N G   D  T   L     K+   +  +KLL+ ME+NG  P+
Sbjct: 332 YEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPD 381



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 141/327 (43%), Gaps = 7/327 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR        Y+ L+  + K  +   A  +  +M  +GC P+   YN LI        K 
Sbjct: 95  QRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFC----KL 150

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIY 122
             + +A+  F +M     C P++ TYNIL+   C Q R  D    L +E+ +    P+  
Sbjct: 151 GNMDEAVVLFNQMLE-NSCSPDVFTYNILIDGYCKQERPQDGAK-LLQEMVKYGCEPNFI 208

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN +MD+  K+G   +  ++   M    CKP   TFNL+ID + K    D   ++F+ +
Sbjct: 209 TYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLM 268

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 P + T+N MI    +A     A  + ++MT     P  +TY  I++       V
Sbjct: 269 TDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQV 328

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A E+++ L   G  + V T + +++  C +    +A+ L       G  PD   Y +L
Sbjct: 329 DEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTIL 388

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
              + KA+  +        M   G VP
Sbjct: 389 IHGFCKADQLDKSLAFFSEMLDKGCVP 415



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 137/320 (42%), Gaps = 17/320 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL---HTRDKAKALAKAL 70
           Y+ LI    K G    A+ LF++M  + C PD   YN LI  +      +D AK L + +
Sbjct: 140 YNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMV 199

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQA-RNVDQVNALFKELHESILAPDIYTYNGVMD 129
            Y         C+PN +TYN L+ +  ++ + +D  N L + +      P  +T+N ++D
Sbjct: 200 KY--------GCEPNFITYNTLMDSLVKSGKYIDAFN-LAQMMLRRDCKPSHFTFNLMID 250

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            + K G +     +   M    C PDI T+N++I    +    D   Q+ + +  +   P
Sbjct: 251 MFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPP 310

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRARE 247
            + T+NS++    KA    +A  V++ +    Y    +T  C   + G C +  +  A +
Sbjct: 311 DVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVT--CSTLIDGLCKSRRLDDAEK 368

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +  E+ + G    V     ++  +C      ++   F    + G  P   TY ++     
Sbjct: 369 LLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLC 428

Query: 308 KANMKELVQKLLKRMEQNGI 327
           K+        LLK M + G+
Sbjct: 429 KSARVRDGCMLLKTMLERGV 448



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 121/312 (38%), Gaps = 73/312 (23%)

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK---------------- 133
           N LL A  + +   +   LFK     + +PD  TY+ +++ + K                
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 134 ----------NGMIK------EMESVLSRMKSNQ--CKPDIITFNLLIDSYGKRQAFDKM 175
                     N +IK       ++S L   +  Q  C P +IT+ +L+D+  K       
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARISDA 121

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
             + + ++ +   P + T+N++I  + K     +A  +F +M     +P   TY  +I  
Sbjct: 122 SLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILID- 180

Query: 236 YGYC------DNVSRARE---------------IFDELSKLGK--------------DMK 260
            GYC      D     +E               + D L K GK              D K
Sbjct: 181 -GYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCK 239

Query: 261 VS--TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
            S  T N M++ +C  G    A  LF+   + G  PD  TY ++     +AN  +  ++L
Sbjct: 240 PSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQL 299

Query: 319 LKRMEQNGIVPN 330
           L+RM + G  P+
Sbjct: 300 LERMTEAGCPPD 311



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 15/173 (8%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +   R  + D   Y+ +I+   +  +   A  L   M  +GC PD   YN++++      
Sbjct: 267 LMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKAS 326

Query: 61  --DKAKALAKAL---GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 115
             D+A  + + L   GYF           ++VT + L+    ++R +D    L +E+  +
Sbjct: 327 QVDEAYEVYEVLRNGGYFL----------DVVTCSTLIDGLCKSRRLDDAEKLLREMERN 376

Query: 116 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
             APD+  Y  ++  + K   + +  +  S M    C P +IT++++ID   K
Sbjct: 377 GSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCK 429



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 34/70 (48%)

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N +L A+       EA  LF+N      +PDS TY  L   + KA   +   +LL  ME+
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 325 NGIVPNKRFF 334
            GIVP+   +
Sbjct: 62  RGIVPHNAVY 71


>gi|297734042|emb|CBI15289.3| unnamed protein product [Vitis vinifera]
          Length = 793

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 155/309 (50%), Gaps = 5/309 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q  +  D   Y+ ++ ++G+  Q      L +EM   GC+P+   YN LI    H+ 
Sbjct: 378 LKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLI----HSY 433

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +A  L +A+  F +M+    C+P+ VTY  L+   A+A  +D    +++++ E+ L+PD
Sbjct: 434 GRANYLNEAVSVFDRMQ-EAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPD 492

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            +TY+ +++  GK G +     +   M    C P+++T+N++I    K + +    ++++
Sbjct: 493 TFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYR 552

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            + ++  +P   T++ ++   G      +AE +F +M    + P    Y  ++ ++G   
Sbjct: 553 DMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVG 612

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           NV ++ E +  +   G    V T N++L A+      ++A  L ++   +G+ P   TY 
Sbjct: 613 NVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQTYT 672

Query: 301 LLYKAYTKA 309
           LL    T+A
Sbjct: 673 LLLSCCTEA 681



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 114/262 (43%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           ALG+F  +K     K +  TY  ++    +AR    +N L  E+      P++ TYN ++
Sbjct: 371 ALGFFYWLKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLI 430

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            +YG+   + E  SV  RM+   C+PD +T+  LID + K    D    +++ +  +   
Sbjct: 431 HSYGRANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLS 490

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   T++ +I   GKA     A  +F +M      P+ +TY  +I +     N   A E+
Sbjct: 491 PDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALEL 550

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           + ++   G      T + ++E     G   EA+ +F         PD   Y LL   + K
Sbjct: 551 YRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGK 610

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
               E   +  + M   G+ PN
Sbjct: 611 VGNVEKSWEWYQAMLNAGLCPN 632



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 103/217 (47%), Gaps = 4/217 (1%)

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D +TY  ++   G+      +  +L+ M  + C+P+++T+N LI SYG+    ++   VF
Sbjct: 387 DGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVF 446

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             +  +  +P   T+ ++I  + KA     A +++QKM     +P   TY  II   G  
Sbjct: 447 DRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKA 506

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAM--LEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
            +++ A ++F E+   G    + T N M  L+A   N  PT  +L + +  N G  PD  
Sbjct: 507 GHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARN-YPTALEL-YRDMQNAGFQPDKV 564

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           TY ++ +        E  + +   M++   VP++  +
Sbjct: 565 TYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVY 601



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 96/197 (48%), Gaps = 7/197 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  YS +I  +GK G    A  LF EM + GC P+   YN +I      + KA+    A
Sbjct: 492 DTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIA----LQAKARNYPTA 547

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  ++ M+     +P+ VTY+I++       ++++  A+F E+      PD   Y  ++D
Sbjct: 548 LELYRDMQNAG-FQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVD 606

Query: 130 AYGKNGMI-KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            +GK G + K  E   + + +  C P++ T N L+ ++ +         + +S++    +
Sbjct: 607 LWGKVGNVEKSWEWYQAMLNAGLC-PNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQ 665

Query: 189 PTLPTFNSMIINYGKAR 205
           P+L T+  ++    +AR
Sbjct: 666 PSLQTYTLLLSCCTEAR 682



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/248 (20%), Positives = 106/248 (42%), Gaps = 8/248 (3%)

Query: 102 VDQVNALFKELHESILAPD-IYTYNGVMDAYGKNGMIKEMESVLSRM-------KSNQCK 153
           V+ V+ + ++L     A + +   N +MDAY  N ++K+++     +       +    K
Sbjct: 326 VENVSRILRQLSWGPAAEEALRNLNCLMDAYQANQVLKQIQDHPVALGFFYWLKRQTGFK 385

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
            D  T+  ++   G+ + F  + ++   ++    +P + T+N +I +YG+A    +A  V
Sbjct: 386 HDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSV 445

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F +M      P  +TY  +I ++     +  A  ++ ++ +        T + ++     
Sbjct: 446 FDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGK 505

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
            G  T A  LF    + G  P+  TY ++     KA       +L + M+  G  P+K  
Sbjct: 506 AGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVT 565

Query: 334 FLEALETF 341
           +   +E  
Sbjct: 566 YSIVMEVL 573



 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+++ W + D  +Y  L+ + GK G    +   +  M N+G  P+    N+L++A L   
Sbjct: 589 MKRKNW-VPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFL--- 644

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN 101
            +   L+ A    Q M  +   +P++ TY +LL  C +AR+
Sbjct: 645 -RVHRLSDAYNLLQSMLRLG-LQPSLQTYTLLLSCCTEARS 683


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 142/319 (44%), Gaps = 6/319 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ LIA+  K      A+ LF EMR+  CRPD   Y  LI        KA    +A  +
Sbjct: 263 IYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRG----LGKAGRFDEAYNF 318

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA-Y 131
           F +M+  E C+P+ V  N ++    +A  +D    LF+E+      P + TYN ++ A +
Sbjct: 319 FHEMR-REGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALF 377

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
                I E+ S   RMK +   P   T+++LID + K    +K   + + +      P  
Sbjct: 378 ESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCP 437

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             + S+I   GKA+    A  +FQ++     + S   Y  +I   G    +  A  +FDE
Sbjct: 438 AAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDE 497

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           ++KLG    V   NA++      G+  EA          G  PD ++Y ++     K   
Sbjct: 498 MNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGG 557

Query: 312 KELVQKLLKRMEQNGIVPN 330
                ++L  M+Q+ I P+
Sbjct: 558 PHRAMEMLSNMKQSAIKPD 576



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 151/318 (47%), Gaps = 6/318 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y++LI  +GK G+   A   F EMR  GCRPD  V N +I    +   KA  L  A
Sbjct: 295 DVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMI----NFLGKAGRLDDA 350

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARN-VDQVNALFKELHESILAPDIYTYNGVM 128
           +  F++M G  +C P++VTYN +++A  ++++ + ++++ F+ +  S ++P  +TY+ ++
Sbjct: 351 VKLFEEM-GTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILI 409

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D + K    ++   +L  M      P    +  LID+ GK + +D   ++F+ L  +   
Sbjct: 410 DGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGS 469

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
            +   +  MI + GKA     A  +F +M  +  TP+   Y  +++       +  A   
Sbjct: 470 SSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTT 529

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
              + + G    +++ N +L      G P  A  +  N     + PD+ +Y  +  A + 
Sbjct: 530 MRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSH 589

Query: 309 ANMKELVQKLLKRMEQNG 326
           A + E   KL+K M   G
Sbjct: 590 AGLFEEAAKLMKEMNVLG 607



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 150/350 (42%), Gaps = 34/350 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSG-CRPDPSVYNALITAH--LHTRDKAKALAK-- 68
           Y+ +I ++  +GQ      L++EM N G C PD   Y+ALI+A   L  +D A  L    
Sbjct: 193 YNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEM 252

Query: 69  ---------------------------ALGYFQKMKGMERCKPNIVTYNILLRACAQARN 101
                                      ALG F++M+  + C+P++ TY  L+R   +A  
Sbjct: 253 KDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRH-QYCRPDVFTYTELIRGLGKAGR 311

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
            D+    F E+      PD    N +++  GK G + +   +   M + QC P ++T+N 
Sbjct: 312 FDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNT 371

Query: 162 LIDS-YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
           +I + +  +    ++   F+ +  S   P+  T++ +I  + K     KA  + ++M   
Sbjct: 372 IIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEK 431

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
            + P    Y  +I   G       A E+F EL +            M++     G   +A
Sbjct: 432 GFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDA 491

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             LF+  + +G TP+   Y  L     +A M +     ++RM+++G +P+
Sbjct: 492 VNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPD 541



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 132/312 (42%), Gaps = 5/312 (1%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S +I ++G       A+ +F +++   C+P    YN++I   +H     K        + 
Sbjct: 159 SDIIRMLGNAKMISKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHE----LYN 214

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M     C P+ VTY+ L+ A  +    D    L  E+ ++ + P    Y  ++  + K 
Sbjct: 215 EMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKL 274

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
             +     +   M+   C+PD+ T+  LI   GK   FD+    F  +     +P     
Sbjct: 275 NNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVI 334

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII-TMYGYCDNVSRAREIFDELS 253
           N+MI   GKA     A  +F++M  ++  PS +TY  II  ++     +S     F+ + 
Sbjct: 335 NNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMK 394

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G      T + +++ +C      +A +L E     G  P  + Y  L  A  KA   +
Sbjct: 395 GSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYD 454

Query: 314 LVQKLLKRMEQN 325
           +  +L + +++N
Sbjct: 455 IAHELFQELKEN 466



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 111/229 (48%), Gaps = 7/229 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI    K  +T  AM L  EM   G  P P+ Y +LI A      KAK    A   F
Sbjct: 405 YSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDA----LGKAKRYDIAHELF 460

Query: 74  QKMKGMERCKPNIV-TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           Q++K  E C  +    Y ++++   +A  +D    LF E+++    P++Y YN +M    
Sbjct: 461 QELK--ENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLA 518

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + GM+ E  + + RM+ + C PDI ++N++++   K     +  ++  ++  S  KP   
Sbjct: 519 RAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAV 578

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++N+++     A L  +A  + ++M  + +    ITY  I+   G  D+
Sbjct: 579 SYNTVLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEAIGKVDH 627



 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 51/250 (20%), Positives = 100/250 (40%), Gaps = 12/250 (4%)

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYT----YNGVMDAYGKNGMIKEMESV 143
           TY  L+R C +   V+Q   ++K + E +  P         + ++   G   MI +  ++
Sbjct: 121 TYMALIR-CLEV--VEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAI 177

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP---TFNSMIIN 200
             ++K  +C+P    +N +I        ++K+ +++  +  S E    P   T++++I  
Sbjct: 178 FYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEM--SNEGHCFPDTVTYSALISA 235

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
           + K   Q  A  +  +M      P+   Y  +I ++   +NV  A  +F+E+        
Sbjct: 236 FCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPD 295

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           V T   ++      G   EA   F      G  PD+     +     KA   +   KL +
Sbjct: 296 VFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFE 355

Query: 321 RMEQNGIVPN 330
            M     +P+
Sbjct: 356 EMGTLQCIPS 365



 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 35/188 (18%)

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN-YGKARLQGKAEYV 213
           D  T+  LI      + + +M ++ + ++ +      P   S II   G A++  KA  +
Sbjct: 118 DTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAI 177

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F ++   K  P+   Y  +I M  +     +  E+++E+S               E +C 
Sbjct: 178 FYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSN--------------EGHCF 223

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
                               PD+ TY  L  A+ K   ++   +LL  M+ NG+ P  + 
Sbjct: 224 --------------------PDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKI 263

Query: 334 FLEALETF 341
           +   +  F
Sbjct: 264 YTMLIALF 271


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 157/366 (42%), Gaps = 42/366 (11%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R  + D   +S LI V+ + G    A+  F EM  SG  PD  +Y  LI        + 
Sbjct: 390 RRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFC----RN 445

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            AL+ AL    +M     C  ++VTYN  L    + +     + LF E+ E  + PD YT
Sbjct: 446 GALSDALKMRDEMLA-RGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYT 504

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-------RQAFDKME 176
           +  ++  Y K+G + +  ++   M     KPD +T+N LID + K       ++ +D M 
Sbjct: 505 FTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMI 564

Query: 177 Q----------------------------VFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           +                            +   ++    +P L T N++I  Y ++    
Sbjct: 565 RKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMP 624

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           KA     KM +    P   +Y  +I  Y    N+ +A  + +E+ K G    + T N +L
Sbjct: 625 KAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLIL 684

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKRMEQNGI 327
             +C  G   EA+ +      +G+ PD +TY  L   + ++ NMKE   +    M Q G+
Sbjct: 685 NGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAF-RFHDEMLQRGL 743

Query: 328 VPNKRF 333
           VP+ RF
Sbjct: 744 VPDDRF 749



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 144/342 (42%), Gaps = 12/342 (3%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           +KL+  + + G   LA  ++ E+   G   +    N ++ A      K +     + +  
Sbjct: 226 NKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALC----KDRKFENVMFFLS 281

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
            M+G +    +IVTYN L+ A  +   V++   L        + P + TYN ++    K 
Sbjct: 282 DMEG-KGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKI 340

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G     + VL  M      P+  T+N L+    +R    + +++F  +      P L +F
Sbjct: 341 GKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSF 400

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDEL 252
           +S+I    +     +A   F++M      P  + Y  +I   G+C N  +S A ++ DE+
Sbjct: 401 SSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILID--GFCRNGALSDALKMRDEM 458

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G  M V T N  L   C   +  +AD+LF      G+ PD  T+  L + Y K    
Sbjct: 459 LARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNM 518

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAK 354
           +    L + M +  + P+K  +   ++ F  +    + G AK
Sbjct: 519 DKALNLFEAMVRTNLKPDKVTYNTLIDGFCKA---GEMGRAK 557



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 124/261 (47%), Gaps = 5/261 (1%)

Query: 48  VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNA 107
           +Y+ L+  ++    +AK L +    FQ ++  +    +I   N LL    +   VD    
Sbjct: 189 IYDLLVRTYV----QAKKLREGSEAFQILR-RKGVSVSINACNKLLGGLVRTGWVDLAWE 243

Query: 108 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
           ++ E+    +  ++YT N +++A  K+   + +   LS M+      DI+T+N LI++Y 
Sbjct: 244 IYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYC 303

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
           +    ++  Q+  S      +P L T+N+++    K     +A+ V  +M  +  TP+  
Sbjct: 304 REGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAA 363

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           TY  ++      DN+  A+EIFDE+S+ G    + + ++++     NG   +A + F   
Sbjct: 364 TYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREM 423

Query: 288 HNMGVTPDSSTYKLLYKAYTK 308
              G+ PD+  Y +L   + +
Sbjct: 424 ERSGIVPDNVIYTILIDGFCR 444



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 131/323 (40%), Gaps = 21/323 (6%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
            M+  S+M   G   D   YN LI A+       +A  + L  F   +GME   P ++TY
Sbjct: 276 VMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAF-QLLNSFSS-RGME---PGLLTY 330

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           N +L    +    D+   +  E+ +  L P+  TYN ++    +   I E + +   M  
Sbjct: 331 NAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSR 390

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK------PTLPTFNSMIINYGK 203
               PD+++F+ LI    +         ++++LMH +E       P    +  +I  + +
Sbjct: 391 RGVLPDLVSFSSLIGVLARNG------HLYQALMHFREMERSGIVPDNVIYTILIDGFCR 444

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKV 261
                 A  +  +M A       +TY   +   G C     + A  +F+E+ + G     
Sbjct: 445 NGALSDALKMRDEMLARGCFMDVVTYNTFLN--GLCKKKMFADADMLFNEMVERGMVPDF 502

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T   ++  YC +G   +A  LFE      + PD  TY  L   + KA      ++L   
Sbjct: 503 YTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDD 562

Query: 322 MEQNGIVPNKRFFLEALETFSSS 344
           M +  I+P+   +   L  F SS
Sbjct: 563 MIRKDIIPDHISYGTVLNGFCSS 585



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/247 (20%), Positives = 106/247 (42%), Gaps = 41/247 (16%)

Query: 87  VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 146
           + Y++L+R   QA+ + + +  F+ L    ++  I   N ++    + G +     +   
Sbjct: 188 LIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGE 247

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTFNSMIINYGKAR 205
           +     + ++ T N+++++  K + F+ +   F S M  K     + T+N++I  Y +  
Sbjct: 248 VVRGGIELNVYTLNIMVNALCKDRKFENV-MFFLSDMEGKGVFADIVTYNTLINAYCREG 306

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK-DMKVSTL 264
           L  +A  +    ++    P  +TY  I  +YG C              K+GK D     L
Sbjct: 307 LVEEAFQLLNSFSSRGMEPGLLTYNAI--LYGLC--------------KIGKYDRAKDVL 350

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK-LLYKAYTKANMKELVQKLLKRME 323
             ML+                    +G+TP+++TY  LL +   + N+ E  Q++   M 
Sbjct: 351 IEMLQ--------------------LGLTPNAATYNTLLVEICRRDNILE-AQEIFDEMS 389

Query: 324 QNGIVPN 330
           + G++P+
Sbjct: 390 RRGVLPD 396


>gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
           [Vitis vinifera]
          Length = 875

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 155/309 (50%), Gaps = 5/309 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q  +  D   Y+ ++ ++G+  Q      L +EM   GC+P+   YN LI    H+ 
Sbjct: 369 LKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLI----HSY 424

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +A  L +A+  F +M+    C+P+ VTY  L+   A+A  +D    +++++ E+ L+PD
Sbjct: 425 GRANYLNEAVSVFDRMQ-EAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPD 483

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            +TY+ +++  GK G +     +   M    C P+++T+N++I    K + +    ++++
Sbjct: 484 TFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYR 543

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            + ++  +P   T++ ++   G      +AE +F +M    + P    Y  ++ ++G   
Sbjct: 544 DMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVG 603

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           NV ++ E +  +   G    V T N++L A+      ++A  L ++   +G+ P   TY 
Sbjct: 604 NVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQTYT 663

Query: 301 LLYKAYTKA 309
           LL    T+A
Sbjct: 664 LLLSCCTEA 672



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 114/262 (43%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           ALG+F  +K     K +  TY  ++    +AR    +N L  E+      P++ TYN ++
Sbjct: 362 ALGFFYWLKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLI 421

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            +YG+   + E  SV  RM+   C+PD +T+  LID + K    D    +++ +  +   
Sbjct: 422 HSYGRANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLS 481

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   T++ +I   GKA     A  +F +M      P+ +TY  +I +     N   A E+
Sbjct: 482 PDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALEL 541

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           + ++   G      T + ++E     G   EA+ +F         PD   Y LL   + K
Sbjct: 542 YRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGK 601

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
               E   +  + M   G+ PN
Sbjct: 602 VGNVEKSWEWYQAMLNAGLCPN 623



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 103/217 (47%), Gaps = 4/217 (1%)

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D +TY  ++   G+      +  +L+ M  + C+P+++T+N LI SYG+    ++   VF
Sbjct: 378 DGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVF 437

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             +  +  +P   T+ ++I  + KA     A +++QKM     +P   TY  II   G  
Sbjct: 438 DRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKA 497

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAM--LEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
            +++ A ++F E+   G    + T N M  L+A   N  PT  +L + +  N G  PD  
Sbjct: 498 GHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARN-YPTALEL-YRDMQNAGFQPDKV 555

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           TY ++ +        E  + +   M++   VP++  +
Sbjct: 556 TYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVY 592



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 135/303 (44%), Gaps = 20/303 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  YS +I  +GK G    A  LF EM + GC P+   YN +I      + KA+    A
Sbjct: 483 DTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIA----LQAKARNYPTA 538

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  ++ M+     +P+ VTY+I++       ++++  A+F E+      PD   Y  ++D
Sbjct: 539 LELYRDMQNAG-FQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVD 597

Query: 130 AYGKNGMI-KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            +GK G + K  E   + + +  C P++ T N L+ ++ +         + +S++    +
Sbjct: 598 LWGKVGNVEKSWEWYQAMLNAGLC-PNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQ 656

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE- 247
           P+L T+  ++    +AR      +  + M    +         +++M     +    R+ 
Sbjct: 657 PSLQTYTLLLSCCTEARSSFDMGFCGELMAVTGHPAHMF----LLSMPAAGPDGQNVRDH 712

Query: 248 ---IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD-----SSTY 299
                D +    ++ K   ++A+++    +GL  EA  ++E +    V PD     SS Y
Sbjct: 713 VSKFLDLMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVREKSSCY 772

Query: 300 KLL 302
            L+
Sbjct: 773 WLI 775



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/248 (20%), Positives = 106/248 (42%), Gaps = 8/248 (3%)

Query: 102 VDQVNALFKELHESILAPD-IYTYNGVMDAYGKNGMIKEMESVLSRM-------KSNQCK 153
           V+ V+ + ++L     A + +   N +MDAY  N ++K+++     +       +    K
Sbjct: 317 VENVSRILRQLSWGPAAEEALRNLNCLMDAYQANQVLKQIQDHPVALGFFYWLKRQTGFK 376

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
            D  T+  ++   G+ + F  + ++   ++    +P + T+N +I +YG+A    +A  V
Sbjct: 377 HDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSV 436

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F +M      P  +TY  +I ++     +  A  ++ ++ +        T + ++     
Sbjct: 437 FDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGK 496

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
            G  T A  LF    + G  P+  TY ++     KA       +L + M+  G  P+K  
Sbjct: 497 AGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVT 556

Query: 334 FLEALETF 341
           +   +E  
Sbjct: 557 YSIVMEVL 564


>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Brachypodium distachyon]
          Length = 858

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 154/330 (46%), Gaps = 4/330 (1%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S LI+   + G    AM +   M+ +G RP    YNA+I A          L   LGYF+
Sbjct: 237 SALISAYARSGLVNEAMGVLESMKGAGLRPTTVTYNAVIDA---CGKGGVDLRFTLGYFR 293

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M   +R  P+  T+N LL AC++A +++   ALF E+    +  DIYTYN  +DA  K 
Sbjct: 294 QML-RDRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKC 352

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G I+    VL  M++   KP+++T++ LID Y K + +D+  ++++ +     +     +
Sbjct: 353 GNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCY 412

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N+++  Y KA   G+   V  +M         +TY  +I  YG    +     +  ++ +
Sbjct: 413 NTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRR 472

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
            G    V T + +++ Y   G+  +A  ++ +    G+ PD   +        K  + E 
Sbjct: 473 RGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLVEW 532

Query: 315 VQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
              LL  M + GI PN   +   ++ F  S
Sbjct: 533 ALSLLNDMTEMGIKPNVVTYNTIIDAFGKS 562



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 141/327 (43%), Gaps = 8/327 (2%)

Query: 18  IAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMK 77
           I  +GK  +  LA   F      G        +ALI+A+     ++  + +A+G  + MK
Sbjct: 205 IGALGKMSRPDLARRAFDAGIAGGYGNTVFANSALISAYA----RSGLVNEAMGVLESMK 260

Query: 78  GMERCKPNIVTYNILLRACAQARNVDQVNAL--FKELHESILAPDIYTYNGVMDAYGKNG 135
           G    +P  VTYN ++ AC +   VD    L  F+++    L PD  T+N ++ A  + G
Sbjct: 261 GAG-LRPTTVTYNAVIDACGKG-GVDLRFTLGYFRQMLRDRLCPDRKTFNSLLSACSRAG 318

Query: 136 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195
            +++  ++   M       DI T+N  ID+  K    +   QV   +     KP + T++
Sbjct: 319 HLEDARALFDEMIHLGIGRDIYTYNTFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTYS 378

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
           ++I  Y K     +A  +++KM ++      + Y  ++ +Y           + DE+   
Sbjct: 379 TLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDS 438

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
           G +    T N+++  Y   G       L ++    GV P   TY  L   Y+KA M    
Sbjct: 439 GIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDA 498

Query: 316 QKLLKRMEQNGIVPNKRFFLEALETFS 342
             +    +++G+ P+   F   ++T +
Sbjct: 499 FNVYLDFKESGLKPDVVLFSSFIDTLA 525



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 146/345 (42%), Gaps = 20/345 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ L++   + G    A  LF EM + G   D   YN  I A      K   +  A
Sbjct: 303 DRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAIC----KCGNIELA 358

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +     M+  +  KPN+VTY+ L+   ++    D+   L++++    +  D   YN V+ 
Sbjct: 359 MQVLLDMEA-KNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYNTVLA 417

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y K G   E+  V   M+ +  + D +T+N LI+ YGK+   D +  + + +      P
Sbjct: 418 IYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRRRGVAP 477

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           ++ T++++I  Y KA + G A  V+         P  + +   I        V  A  + 
Sbjct: 478 SVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLVEWALSLL 537

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT------------PDSS 297
           ++++++G    V T N +++A+  + + +E D     +  MG+             P + 
Sbjct: 538 NDMTEMGIKPNVVTYNTIIDAFGKSKVLSEED---PEAGEMGIVGVYNGQIIRAANPVTR 594

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
               +     ++     + +L ++M Q G+ PN   F   L   S
Sbjct: 595 GRSAIDVRMRRSQELYFILELFQKMVQQGVRPNVVTFSAILNACS 639



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 132/313 (42%), Gaps = 33/313 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++A+  K G+      +  EM +SG   D   YN+LI  +     K   L   
Sbjct: 408 DRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGY----GKQGRLDIV 463

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               Q M+      P+++TY+ L+   ++A        ++ +  ES L PD+  ++  +D
Sbjct: 464 SFLVQDMR-RRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFID 522

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              KNG+++   S+L+ M     KP+++T+N +ID++GK +   + +        + E  
Sbjct: 523 TLAKNGLVEWALSLLNDMTEMGIKPNVVTYNTIIDAFGKSKVLSEEDP------EAGEMG 576

Query: 190 TLPTFNSMIINYGKARLQGKAEY---------------VFQKMTAMKYTPSFITYECIIT 234
            +  +N  II       +G++                 +FQKM      P+ +T+  I+ 
Sbjct: 577 IVGVYNGQIIRAANPVTRGRSAIDVRMRRSQELYFILELFQKMVQQGVRPNVVTFSAILN 636

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
               C+N   A  + ++L +L  +        +L  Y    + ++A  LF     M    
Sbjct: 637 ACSRCNNFEDAALLLEQL-RLFDNFVYGVAYGLLMGY--QEIWSQAQSLFNQLGRM---- 689

Query: 295 DSSTYKLLYKAYT 307
           DS T    Y A T
Sbjct: 690 DSPTSSAFYNALT 702


>gi|452825793|gb|EME32788.1| mitochondrial protein translocase, MPT family [Galdieria
           sulphuraria]
          Length = 821

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 162/356 (45%), Gaps = 39/356 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEM-RNSGCRPDPSVYNALI-TAHLHTRDKAKALAKALG 71
           YS LI  +GK G    A+  F  M R     P+   YNA+I       R+    + +A+ 
Sbjct: 350 YSALIETLGKGGLCVRALSQFRRMSRIDNIAPNTVTYNAVIKIVSRCKRNDCGGITRAMS 409

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             ++M   + C P++VTY  L+ A ++    ++   LF+E+ E+ + P+ Y Y+ ++ A+
Sbjct: 410 LLREM-ATKGCIPDVVTYATLIDAFSKRMEPERALKLFQEMKEANVKPNNYCYSSLISAF 468

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G ++   ++   M   +  PD+  FN LID +GK +  DK  +++  +   + +P  
Sbjct: 469 CRAGYVERALAIFEEMTHERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMRKLQIQPDR 528

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAM-KYTPSFITYECIITMYGYCDNVSRAREIFD 250
            TFN++I   GKA+   +A      MT +   TP   +Y  +I   G   + ++A E+F+
Sbjct: 529 ITFNALISASGKAKNSIRALEAMGDMTEIYGLTPDRHSYNALIDACGKSGDFTKAYEVFE 588

Query: 251 ELSKLGKDMKVSTLNAML--------------------------EAYCMNGLPT----EA 280
           E+   G      T NA++                          +AY MN L +      
Sbjct: 589 EMRTKGIRPCTVTFNALIYGASRSHDLAASFKIVDLMLQEGLNPDAYTMNTLISACNRRQ 648

Query: 281 DL-----LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           DL     + E    +GV PD+ T+     A  K +  E + +LL  ME  GI P+K
Sbjct: 649 DLSTAFEVLEKFKQLGVHPDNVTFNTFIDAVGKLDSSEKMFELLSEMESRGISPSK 704



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 135/301 (44%), Gaps = 10/301 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI+   + G    A+ +F EM +    PD   +NALI        K + + KA   +
Sbjct: 461 YSSLISAFCRAGYVERALAIFEEMTHERIVPDVFAFNALIDGF----GKLRQVDKAFEIY 516

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI-LAPDIYTYNGVMDAYG 132
            +M+ ++  +P+ +T+N L+ A  +A+N  +      ++ E   L PD ++YN ++DA G
Sbjct: 517 DRMRKLQ-IQPDRITFNALISASGKAKNSIRALEAMGDMTEIYGLTPDRHSYNALIDACG 575

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME--QVFKSLMHSKEKPT 190
           K+G   +   V   M++   +P  +TFN LI  YG  ++ D     ++   ++     P 
Sbjct: 576 KSGDFTKAYEVFEEMRTKGIRPCTVTFNALI--YGASRSHDLAASFKIVDLMLQEGLNPD 633

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             T N++I    + +    A  V +K   +   P  +T+   I   G  D+  +  E+  
Sbjct: 634 AYTMNTLISACNRRQDLSTAFEVLEKFKQLGVHPDNVTFNTFIDAVGKLDSSEKMFELLS 693

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+   G      TLN ++      G     +  F   H   + PDS T+ LL + Y   +
Sbjct: 694 EMESRGISPSKVTLNTIVGCCGRRGKIDLMERGFHMFHEKRLEPDSVTFSLLIENYVSHH 753

Query: 311 M 311
           +
Sbjct: 754 L 754



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 91/201 (45%), Gaps = 5/201 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI   GK G    A  +F EMR  G RP    +NALI     + D A +    
Sbjct: 563 DRHSYNALIDACGKSGDFTKAYEVFEEMRTKGIRPCTVTFNALIYGASRSHDLAASFKIV 622

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               Q     E   P+  T N L+ AC + +++     + ++  +  + PD  T+N  +D
Sbjct: 623 DLMLQ-----EGLNPDAYTMNTLISACNRRQDLSTAFEVLEKFKQLGVHPDNVTFNTFID 677

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A GK    ++M  +LS M+S    P  +T N ++   G+R   D ME+ F      + +P
Sbjct: 678 AVGKLDSSEKMFELLSEMESRGISPSKVTLNTIVGCCGRRGKIDLMERGFHMFHEKRLEP 737

Query: 190 TLPTFNSMIINYGKARLQGKA 210
              TF+ +I NY    L  KA
Sbjct: 738 DSVTFSLLIENYVSHHLLDKA 758



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 126/307 (41%), Gaps = 49/307 (15%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           + L  F  M   E  K ++ +++I + A  +     +       + E  + P+IYTY+ +
Sbjct: 295 ECLDMFLSMPSNE-VKRDVASWSIYITALGRLERYSEAERSLIWMREEHIQPNIYTYSAL 353

Query: 128 MDAYGKNGM-----------------------------------------IKEMESVLSR 146
           ++  GK G+                                         I    S+L  
Sbjct: 354 IETLGKGGLCVRALSQFRRMSRIDNIAPNTVTYNAVIKIVSRCKRNDCGGITRAMSLLRE 413

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           M +  C PD++T+  LID++ KR   ++  ++F+ +  +  KP    ++S+I  + +A  
Sbjct: 414 MATKGCIPDVVTYATLIDAFSKRMEPERALKLFQEMKEANVKPNNYCYSSLISAFCRAGY 473

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
             +A  +F++MT  +  P    +  +I  +G    V +A EI+D + KL       T NA
Sbjct: 474 VERALAIFEEMTHERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNA 533

Query: 267 MLEAYCMNGLPTEADLLFENSHNM----GVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           ++ A   +G    +    E   +M    G+TPD  +Y  L  A  K+       ++ + M
Sbjct: 534 LISA---SGKAKNSIRALEAMGDMTEIYGLTPDRHSYNALIDACGKSGDFTKAYEVFEEM 590

Query: 323 EQNGIVP 329
              GI P
Sbjct: 591 RTKGIRP 597



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 103/224 (45%), Gaps = 6/224 (2%)

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           +N  MDA  K G  +E   +   M SN+ K D+ ++++ I + G+ + + + E+    + 
Sbjct: 280 WNYTMDALLKGGKARECLDMFLSMPSNEVKRDVASWSIYITALGRLERYSEAERSLIWMR 339

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM-KYTPSFITYECIITMYGY---- 238
               +P + T++++I   GK  L  +A   F++M+ +    P+ +TY  +I +       
Sbjct: 340 EEHIQPNIYTYSALIETLGKGGLCVRALSQFRRMSRIDNIAPNTVTYNAVIKIVSRCKRN 399

Query: 239 -CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
            C  ++RA  +  E++  G    V T   +++A+     P  A  LF+      V P++ 
Sbjct: 400 DCGGITRAMSLLREMATKGCIPDVVTYATLIDAFSKRMEPERALKLFQEMKEANVKPNNY 459

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            Y  L  A+ +A   E    + + M    IVP+   F   ++ F
Sbjct: 460 CYSSLISAFCRAGYVERALAIFEEMTHERIVPDVFAFNALIDGF 503


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 160/329 (48%), Gaps = 7/329 (2%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R Y  D   Y+ +I  + K G+T  A  LF +M  +GC+PD   Y+ +I +      K +
Sbjct: 4   RGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLC----KDR 59

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            + +AL  F  MK  +   PNI TYN L++         + +A+  E+    + P+I T+
Sbjct: 60  RVNEALDIFSYMKA-KGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTF 118

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           + +++ + K G + E   VL  M     +P+++T++ L++ Y  +    +  ++F  ++ 
Sbjct: 119 SLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMIT 178

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
              KP + ++N +I  Y KA+  G+A+ +F +M     TP  ++Y  +I        +  
Sbjct: 179 KGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLRE 238

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A ++F  +   G    + T + +L+ +C  G   +A  LF    +  + P+   Y +L  
Sbjct: 239 AHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILID 298

Query: 305 AYTKA-NMKELVQKLLKRMEQNGIVPNKR 332
           A  K+ N+KE  +KL   +   G+ PN +
Sbjct: 299 AMCKSRNLKE-ARKLFSELFVQGLQPNMK 326


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 162/362 (44%), Gaps = 21/362 (5%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+   +AD   Y+ ++    K G    A   F+EMR  GC P+   Y ALI A+L    K
Sbjct: 510 KRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYL----K 565

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILL----------RAC------AQARNVDQVN 106
           AK ++ A   F+ M   E C PNIVTY+ L+          +AC        +++V  V+
Sbjct: 566 AKKVSYANELFETMLS-EGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVD 624

Query: 107 ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
             FK+  ++   P++ TY  ++D + K+  ++E   +L  M    C+P+ I ++ LID  
Sbjct: 625 MYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGL 684

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
            K    D+ ++V   +       TL T++S+I  Y K + Q  A  V  KM      P+ 
Sbjct: 685 CKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNV 744

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           + Y  +I           A ++   + + G    V T  AM++ + M G       L E 
Sbjct: 745 VIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLER 804

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLA 346
             + GV P+  TY++L     K    ++   LL+ M+Q     +   + + +E F+    
Sbjct: 805 MGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFI 864

Query: 347 GS 348
            S
Sbjct: 865 ES 866



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 131/288 (45%), Gaps = 17/288 (5%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           KA    ++M G +   P+  TY+ +L     A  ++    LF+E+    L  D+YTY  +
Sbjct: 466 KAFSVIREMIG-QGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIM 524

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D++ K G+I++     + M+   C P+++T+  LI +Y K +      ++F++++    
Sbjct: 525 VDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGC 584

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT----------------PSFITYEC 231
            P + T++++I  + KA    KA  +F++M   K                  P+ +TY  
Sbjct: 585 LPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGA 644

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           ++  +     V  AR++ D +S  G +      +A+++  C  G   EA  +       G
Sbjct: 645 LLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHG 704

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
                 TY  L   Y K   ++L  K+L +M +N   PN   + E ++
Sbjct: 705 FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMID 752



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 141/351 (40%), Gaps = 29/351 (8%)

Query: 2   QKQRWY--IADTGI------YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI 53
           Q ++W+  + + G       Y+ LI    K  +   A  LF  M + GC P+   Y+ALI
Sbjct: 536 QARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALI 595

Query: 54  TAHLHTRDKAKALAKALGYFQKMKGMERC---------------KPNIVTYNILLRACAQ 98
             H     KA  + KA   F++M G +                 +PN+VTY  LL    +
Sbjct: 596 DGHC----KAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCK 651

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
           +  V++   L   +      P+   Y+ ++D   K G + E + V + M  +     + T
Sbjct: 652 SHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYT 711

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           ++ LID Y K +  D   +V   ++ +   P +  +  MI    K     +A  + Q M 
Sbjct: 712 YSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMME 771

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
                P+ +TY  +I  +G    +    E+ + +   G      T   +++  C NG   
Sbjct: 772 EKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALD 831

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
            A  L E          ++ Y+ + + + K  ++ L   LL  + Q+   P
Sbjct: 832 VAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESL--GLLDEIGQDDTAP 880



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 68/377 (18%), Positives = 153/377 (40%), Gaps = 43/377 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +Q  Y     +Y+ L+ ++ +    ++      ++R+     D  V+   +   +    +
Sbjct: 157 RQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDD----DKEVFGEFLNVLVRKHCR 212

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL----- 117
             + + AL    ++K   R +P+  TYN L++A  +A  +D  + + +E+  + L     
Sbjct: 213 NGSFSIALEELGRLKDF-RFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGF 271

Query: 118 ---------------------------APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
                                       PD   Y  ++    +  + +E    L+RM++ 
Sbjct: 272 TLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRAT 331

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
            C P+++T++ L+     ++   + ++V   +M     P+   FNS++  Y  +     A
Sbjct: 332 SCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYA 391

Query: 211 EYVFQKMTAMKYTPSFITYECII-TMYG-----YCDNVSRAREIFDELSKLGKDMKVSTL 264
             + +KM    + P ++ Y  +I ++ G      CD +  A + + E+   G  +    +
Sbjct: 392 YKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINV 451

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           ++     C  G   +A  +       G  PD+STY  +      A+  EL   L + M++
Sbjct: 452 SSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKR 511

Query: 325 NGIVPNKRFFLEALETF 341
            G+V +   +   +++F
Sbjct: 512 GGLVADVYTYTIMVDSF 528



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 144/337 (42%), Gaps = 25/337 (7%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           ++ DT  Y+KLI+ + +      AM   + MR + C P+   Y+ L+   L+        
Sbjct: 298 FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNK------- 350

Query: 67  AKALGYFQK---MKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            K LG  ++   M  ME C P+   +N L+ A   + +      L K++ +    P    
Sbjct: 351 -KQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVV 409

Query: 124 YNGVMDAYGKN------GMIKEMESVLSRMKSNQC---KPDIITFNLLIDSYGKRQAFDK 174
           YN ++ +   +       ++   E   S M +      K ++ +F   + S GK   ++K
Sbjct: 410 YNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGK---YEK 466

Query: 175 MEQVFKSLMHSKEKPTLPTFNSMIINY-GKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
              V + ++     P   T+ S ++NY   A     A  +F++M          TY  ++
Sbjct: 467 AFSVIREMIGQGFIPDTSTY-SKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMV 525

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
             +     + +AR+ F+E+ ++G    V T  A++ AY      + A+ LFE   + G  
Sbjct: 526 DSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCL 585

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           P+  TY  L   + KA   E   ++ +RM  +  VP+
Sbjct: 586 PNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPD 622



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 129/321 (40%), Gaps = 52/321 (16%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK---AKALAKA 69
           +Y  LI  + K G+   A  + +EM   G       Y++LI  +   + +   +K L+K 
Sbjct: 676 VYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKM 735

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L           C PN+V Y  ++    +    D+   L + + E    P++ TY  ++D
Sbjct: 736 LE--------NSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 787

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD-------KMEQ----- 177
            +G  G I+    +L RM S    P+ +T+ +LID   K  A D       +M+Q     
Sbjct: 788 GFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPT 847

Query: 178 ---------------------VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
                                +   +      P L  +  +I N  KA+    A  + ++
Sbjct: 848 HTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEE 907

Query: 217 M-----TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
           +     T + Y+    TY  +I      + V  A ++F E++K G   ++ +  ++++  
Sbjct: 908 VATFSATLVDYSS---TYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGL 964

Query: 272 CMNGLPTEADLLFENSHNMGV 292
             N   +EA LL +   +M +
Sbjct: 965 FRNSKISEALLLLDFISHMEI 985


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 158/347 (45%), Gaps = 15/347 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + K G+   A     EM +SGC PD   Y +L+ A      +A     AL   
Sbjct: 640 YNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALC----RASRTDDALQLV 695

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++K      P+ VTYNIL+    ++   +Q   + +E+      PD+ TYN ++D+  K
Sbjct: 696 SELKSFGW-DPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCK 754

Query: 134 NGMIKE---MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-- 188
            G ++E   +   +S   S  C P+++T+++LI+   K    D+  ++ + +M       
Sbjct: 755 AGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVL 814

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKM--TAMKYTPSFITYECIITMYGYCDNVSRAR 246
           P + T+NS +    K  +  +A  + + +   +++ +P  +T+  +I     C     A 
Sbjct: 815 PNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEAC 874

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +FD++   G    V T N ++   C       A  + E+  + GVTPD  TY +L  A+
Sbjct: 875 NVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAF 934

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSA 353
            KA+  +   +LL  M   G  PN   F   ++    S    QSG A
Sbjct: 935 CKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKS---DQSGEA 978



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 161/374 (43%), Gaps = 37/374 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH----------------- 56
           ++K + ++ K G    A+ LF       CRP+   Y+ L+ A                  
Sbjct: 114 FNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAGGDVERTLGFFRRI 173

Query: 57  -------------LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD 103
                        L +  +A   A+AL  F+     +   P IVTYN ++    ++  + 
Sbjct: 174 RSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELG 233

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
               LF+EL E    PD+ TYN ++D+  K G ++E   +   M S  C P+++T+++LI
Sbjct: 234 AGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLI 293

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEK--PTLPTFNSMIINYGKARLQGKAEYVFQKM--TA 219
           +   K    D+  ++ + +        P + T+NS +    K  +  +A  + + +   +
Sbjct: 294 NGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGS 353

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
           ++ +P  +T+  +I     C  +  A  +FD++   G    V T NA++   C       
Sbjct: 354 LRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMER 413

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
           A  + E+  + GVTPD  TY +L  A+ KA+  +   +LL  M   G  PN   F   ++
Sbjct: 414 AHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIID 473

Query: 340 TFSSSLAGSQSGSA 353
               S    +SG A
Sbjct: 474 GLCKS---DRSGEA 484



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 151/355 (42%), Gaps = 41/355 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  +S LI  + K GQ   A  +F +M   G  P+   YNAL+        KA  + +A
Sbjct: 359 DTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLC----KADKMERA 414

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
               + M  KG+    P+++TY++L+ A  +A  VD+   L   +      P++ T+N +
Sbjct: 415 HAMIESMVDKGV---TPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSI 471

Query: 128 MDAYG-----------------KNGMIKE-------MESVLSRMKSNQCK--------PD 155
           +D                    K+G++ +       ++ +    ++ Q +        PD
Sbjct: 472 IDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPD 531

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
              FN  I+   K     +  QV+  ++  +  P   TFN +I    KA    +A  +F+
Sbjct: 532 TYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFE 591

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
           +M A    P  +T+  +I        V  AR+I D +  LG    V T NA++   C +G
Sbjct: 592 EMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSG 651

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              EA    E   + G  PDS TY  L  A  +A+  +   +L+  ++  G  P+
Sbjct: 652 RIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPD 706



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 147/351 (41%), Gaps = 39/351 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCR--PDPSVYNALITAHLHTRDKAKALAKALG 71
           Y+  +  + K+  T  A  L   +R+   R  PD   ++ LI        K   + +A  
Sbjct: 326 YNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLC----KCGQIDEACS 381

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            F  M       PN++TYN L+    +A  +++ +A+ + + +  + PD+ TY+ ++DA+
Sbjct: 382 VFDDMIAGGY-VPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAF 440

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-------QAFDKM--------- 175
            K   + E   +L  M S  C P+++TFN +ID   K        Q FD M         
Sbjct: 441 CKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPD 500

Query: 176 --------EQVFKS--------LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
                   + +F++        L+ +   P    FN  I    K     +A  V+ +M  
Sbjct: 501 KITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLE 560

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
           ++  P  +T+  +I       N  +A  +F+E+        V T  A+++  C  G    
Sbjct: 561 LELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEA 620

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           A  + +   N+GV P+  TY  L     K+   E   + L+ M  +G VP+
Sbjct: 621 ARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPD 671



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 148/337 (43%), Gaps = 18/337 (5%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  +   + D   Y  LI  + + G+   A  L   M      PDP  Y       ++  
Sbjct: 491 MALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAM------PDPDTYA--FNCCINGL 542

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K   +++AL  + +M  +E   P+ VT+NIL+    +A N +Q +ALF+E+    L PD
Sbjct: 543 SKLGDVSRALQVYNRMLELEL-VPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPD 601

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + T+  ++D   K G ++    +L  M +    P+++T+N L+    K    ++  Q  +
Sbjct: 602 VMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLE 661

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++ S   P   T+ S++    +A     A  +  ++ +  + P  +TY  ++       
Sbjct: 662 EMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSG 721

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL---FENSHNMGVTPDSS 297
              +A  + +E+   G    V T N ++++ C  G   EA  L     +  +    P+  
Sbjct: 722 QTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVV 781

Query: 298 TYKLLYKAYTKAN----MKELVQKLLKRMEQNGIVPN 330
           TY +L     K       +EL+Q+++++     ++PN
Sbjct: 782 TYSVLINGLCKVGRIDEARELIQEMMRK--SCDVLPN 816



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 141/337 (41%), Gaps = 21/337 (6%)

Query: 5    RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSV--YNALITAHLHTRDK 62
            R  + +   YS LI  + K G+   A  L  EM    C   P++  YN+ +        K
Sbjct: 774  RCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLC----K 829

Query: 63   AKALAKALGYFQKMK-GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
               +A+A    + ++ G  R  P+ VT++ L+    +    D+   +F ++      P++
Sbjct: 830  QSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNV 889

Query: 122  YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
             TYN +M+   K   ++   +++  M      PD+IT+++L+D++ K    D+  ++   
Sbjct: 890  VTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHG 949

Query: 182  LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY--TPSFITYECIITMYGYC 239
            +      P + TFNS+I    K+   G+A  +F  MT +K+   P  ITY  +I      
Sbjct: 950  MASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMT-LKHGLAPDKITYCTLIDGLFRT 1008

Query: 240  DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL--LFENSHNMGVTPDSS 297
                +A  + D +     D      N      C+NGL    D+         + + PD  
Sbjct: 1009 GWAGQAEVLLDAM----PDPDTYAFNC-----CINGLSKLGDVSRALHRMLELELVPDKV 1059

Query: 298  TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            T+ +L     KA   E    L + M    + P+   F
Sbjct: 1060 TFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTF 1096



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 131/316 (41%), Gaps = 15/316 (4%)

Query: 1    MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCR--PDPSVYNALITAHLH 58
            M+K    + +   Y+  +  + K+     A  L   +R+   R  PD   ++ LI     
Sbjct: 807  MRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLC- 865

Query: 59   TRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
               K     +A   F  M       PN+VTYN+L+    +   +++ +A+ + + +  + 
Sbjct: 866  ---KCGQTDEACNVFDDMIAGGY-VPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVT 921

Query: 119  PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
            PD+ TY+ ++DA+ K   + E   +L  M S  C P+++TFN +ID   K     +  Q+
Sbjct: 922  PDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQM 981

Query: 179  FKSL-MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
            F  + +     P   T+ ++I    +    G+AE +   M      P    + C I    
Sbjct: 982  FDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMP----DPDTYAFNCCINGLS 1037

Query: 238  YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
               +VSRA     EL  +   +   T N ++   C  G   +A  LFE      + PD  
Sbjct: 1038 KLGDVSRALHRMLELELVPDKV---TFNILIAGACKAGNFEQASALFEEMVAKNLQPDVM 1094

Query: 298  TYKLLYKAYTKANMKE 313
            T+  L     KA   E
Sbjct: 1095 TFGALIDGLCKAGQVE 1110


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 153/331 (46%), Gaps = 17/331 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  LI  + K G T  A+     M    CRP   VY+ +I +      K + L +A
Sbjct: 158 DVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLC----KDRQLTEA 213

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNG 126
           L  F  M  KG+    PN  TY+ L+   C      + +   +  +H  I+ PD  T+N 
Sbjct: 214 LSLFSDMLAKGIS---PNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIM-PDQLTFNT 269

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++DA  K GM+ +   V+  M  +  KPD++T+N L+D +  R    K   VF +++   
Sbjct: 270 LVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKG 329

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P++ ++ ++I  Y K ++  KA  +F++M+     P  +TY  +I  +G C +V R R
Sbjct: 330 CVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLI--HGLC-HVGRLR 386

Query: 247 E---IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           +   +F E+   G+   + T   + +  C N    EA +L +      + PD   Y ++ 
Sbjct: 387 DAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVM 446

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
               +A   E  + L  ++   G+ P+ R +
Sbjct: 447 DGMCRAGELEAARDLFSKLSSKGLHPDVRTY 477



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 148/330 (44%), Gaps = 9/330 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y   T  ++ LI  +  +G+   A+ LF +M   G +PD   Y  LI       + + A+
Sbjct: 120 YQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAI 179

Query: 67  AKALGYFQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
                  + ++ ME+  C+P +V Y+ ++ +  + R + +  +LF ++    ++P+ +TY
Sbjct: 180 -------RFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTY 232

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           + ++      G  KE   +   M   +  PD +TFN L+D+  K     K   V   ++ 
Sbjct: 233 SSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQ 292

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
           S  KP + T+NS++  +      GK   VF  M      PS I+Y  +I  Y     + +
Sbjct: 293 SDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDK 352

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  +F+E+S+ G      T N ++   C  G   +A  LF      G  PD  TY++L+ 
Sbjct: 353 AMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFD 412

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
              K +       LLK +E   + P+   +
Sbjct: 413 YLCKNHRLAEAMVLLKVIEGTNLDPDIHIY 442



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 132/326 (40%), Gaps = 52/326 (15%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R  + D   ++ L+  + K+G    A ++   M  S  +PD   YN+L+  H    +  
Sbjct: 257 HRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSE-- 314

Query: 64  KALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             + K +  F  M  KG   C P++++Y  L+    + + +D+   LF+E+ +  L PD 
Sbjct: 315 --MGKTVNVFDTMVRKG---CVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDT 369

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TYN ++      G +++  ++   M      PD++T+ +L D   K     +   + K 
Sbjct: 370 VTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKV 429

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC-- 239
           +  +   P +  ++                                     I M G C  
Sbjct: 430 IEGTNLDPDIHIYS-------------------------------------IVMDGMCRA 452

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             +  AR++F +LS  G    V T   M+   C  GL  EA  LF      G +P++ TY
Sbjct: 453 GELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTY 512

Query: 300 KLLYKAYTKANMK----ELVQKLLKR 321
            L+ + + + N      +L Q++L R
Sbjct: 513 NLITRGFLRNNETLRAIQLFQEMLSR 538



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 115/280 (41%), Gaps = 2/280 (0%)

Query: 52  LITAHLHTRD-KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFK 110
           +I+   H++      +  AL  F +M  M R  P+IV ++ LL +  + ++   V +L+K
Sbjct: 20  MISHAFHSKSLNVNTIDDALSLFNRMLRM-RPPPSIVDFSKLLTSITRMKHYSTVLSLYK 78

Query: 111 ELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170
           ++    +  + YT N +++++     +    SVL  +     +P   TF  LI       
Sbjct: 79  QMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEG 138

Query: 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
              +  Q+F  +     +P + T+ ++I    K      A    + M      P+ + Y 
Sbjct: 139 KIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYS 198

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
            II        ++ A  +F ++   G      T ++++   C+ G   EA  LF    + 
Sbjct: 199 TIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHR 258

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            + PD  T+  L  A  K  M      ++  M Q+ + P+
Sbjct: 259 KIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPD 298


>gi|225452658|ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic [Vitis vinifera]
 gi|296087770|emb|CBI35026.3| unnamed protein product [Vitis vinifera]
          Length = 675

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 128/247 (51%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P++  YN+++R   +A+  +  + LF+E+ +  LAPD YTY+ ++  +GK GM     S 
Sbjct: 153 PSVFAYNVVIRNVLRAKQWELAHGLFEEMRQRALAPDRYTYSTLITHFGKEGMFDSALSW 212

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L +M+ ++   D++ ++ LI+   K   + K   +F  L  S   P L  +NSMI  +GK
Sbjct: 213 LQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGISPDLVAYNSMINVFGK 272

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A+L  +A  +  +M A    P  ++Y  +++MY        A  +F E++++   + ++T
Sbjct: 273 AKLFREARLLLPEMRAGGVMPDTVSYSTLLSMYVENGKYVEALSVFSEMNEVRCPLDLTT 332

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N M++ Y    +  EAD LF +   MG+ P   +Y  L + Y +A +      L + M+
Sbjct: 333 CNVMIDVYGQLDMAKEADRLFWSMRKMGIEPGIVSYNTLLRVYGEAELFGEAIHLFRLMQ 392

Query: 324 QNGIVPN 330
           +  I  N
Sbjct: 393 RKDIEQN 399



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 148/314 (47%), Gaps = 5/314 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + +  Q  LA  LF EMR     PD   Y+ LIT H     K      AL + 
Sbjct: 158 YNVVIRNVLRAKQWELAHGLFEEMRQRALAPDRYTYSTLIT-HF---GKEGMFDSALSWL 213

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           QKM+  +R   ++V Y+ L+    +  +  +  ++F  L  S ++PD+  YN +++ +GK
Sbjct: 214 QKME-QDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGISPDLVAYNSMINVFGK 272

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
             + +E   +L  M++    PD ++++ L+  Y +   + +   VF  +   +    L T
Sbjct: 273 AKLFREARLLLPEMRAGGVMPDTVSYSTLLSMYVENGKYVEALSVFSEMNEVRCPLDLTT 332

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            N MI  YG+  +  +A+ +F  M  M   P  ++Y  ++ +YG  +    A  +F  + 
Sbjct: 333 CNVMIDVYGQLDMAKEADRLFWSMRKMGIEPGIVSYNTLLRVYGEAELFGEAIHLFRLMQ 392

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           +   +  V T N M++ Y  +    +A  L +   N G+ P++ TY  +   + KA   +
Sbjct: 393 RKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQNRGIEPNAITYSTIISIWDKAGKLD 452

Query: 314 LVQKLLKRMEQNGI 327
               L +++  +GI
Sbjct: 453 RAAMLFQKLRSSGI 466



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 161/346 (46%), Gaps = 13/346 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 182 RQRALAPDRYTYSTLITHFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRKLCDY 241

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +   L  E+    + PD  
Sbjct: 242 SKAIS----IFSRLK-RSGISPDLVAYNSMINVFGKAKLFREARLLLPEMRAGGVMPDTV 296

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +NG   E  SV S M   +C  D+ T N++ID YG+     + +++F S+
Sbjct: 297 SYSTLLSMYVENGKYVEALSVFSEMNEVRCPLDLTTCNVMIDVYGQLDMAKEADRLFWSM 356

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG+A L G+A ++F+ M       + +TY  +I +YG     
Sbjct: 357 RKMGIEPGIVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEH 416

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + G+  D   Y+ +
Sbjct: 417 EKATNLVQEMQNRGIEPNAITYSTIISIWDKAGKLDRAAMLFQKLRSSGIEIDQVLYQTM 476

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 348
             AY +A +    ++LL  +++   +P         ET  + LAG+
Sbjct: 477 IVAYERAGLVAHAKRLLHELKRPDNIPR--------ETAITILAGA 514



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 150/334 (44%), Gaps = 9/334 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  YS L+++  + G+   A+ +FSEM    C  D +  N +I  +    D AK   + 
Sbjct: 294 DTVSYSTLLSMYVENGKYVEALSVFSEMNEVRCPLDLTTCNVMIDVYGQL-DMAKEADRL 352

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               +KM G+E   P IV+YN LLR   +A    +   LF+ +    +  ++ TYN ++ 
Sbjct: 353 FWSMRKM-GIE---PGIVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIK 408

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK+   ++  +++  M++   +P+ IT++ +I  + K    D+   +F+ L  S  + 
Sbjct: 409 IYGKSLEHEKATNLVQEMQNRGIEPNAITYSTIISIWDKAGKLDRAAMLFQKLRSSGIEI 468

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               + +MI+ Y +A L   A+ +  ++      P  I  E  IT+      +  A  +F
Sbjct: 469 DQVLYQTMIVAYERAGLVAHAKRLLHELK----RPDNIPRETAITILAGAGRIEEATWVF 524

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            +    G+   ++    M++ +  N   T    +F+     G  PDS+   L+  A  K 
Sbjct: 525 RQAFDAGEVKDITVFGCMIDLFSRNRKHTNVIEVFDKMRGAGYFPDSNVIALVLNACGKL 584

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
              E    + K ME+ G V +     + L  + +
Sbjct: 585 REFEKADAIYKEMEEEGCVFSDEVHFQMLSLYGA 618


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 162/362 (44%), Gaps = 21/362 (5%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+   +AD   Y+ ++    K G    A   F+EMR  GC P+   Y ALI A+L    K
Sbjct: 469 KRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYL----K 524

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILL----------RAC------AQARNVDQVN 106
           AK ++ A   F+ M   E C PNIVTY+ L+          +AC        +++V  V+
Sbjct: 525 AKKVSYANELFETMLS-EGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVD 583

Query: 107 ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
             FK+  ++   P++ TY  ++D + K+  ++E   +L  M    C+P+ I ++ LID  
Sbjct: 584 MYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGL 643

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
            K    D+ ++V   +       TL T++S+I  Y K + Q  A  V  KM      P+ 
Sbjct: 644 CKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNV 703

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           + Y  +I           A ++   + + G    V T  AM++ + M G       L E 
Sbjct: 704 VIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLER 763

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLA 346
             + GV P+  TY++L     K    ++   LL+ M+Q     +   + + +E F+    
Sbjct: 764 MGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFI 823

Query: 347 GS 348
            S
Sbjct: 824 ES 825



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 131/288 (45%), Gaps = 17/288 (5%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           KA    ++M G +   P+  TY+ +L     A  ++    LF+E+    L  D+YTY  +
Sbjct: 425 KAFSVIREMIG-QGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIM 483

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D++ K G+I++     + M+   C P+++T+  LI +Y K +      ++F++++    
Sbjct: 484 VDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGC 543

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT----------------PSFITYEC 231
            P + T++++I  + KA    KA  +F++M   K                  P+ +TY  
Sbjct: 544 LPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGA 603

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           ++  +     V  AR++ D +S  G +      +A+++  C  G   EA  +       G
Sbjct: 604 LLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHG 663

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
                 TY  L   Y K   ++L  K+L +M +N   PN   + E ++
Sbjct: 664 FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMID 711



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 139/351 (39%), Gaps = 29/351 (8%)

Query: 2   QKQRWY--------IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI 53
           Q ++W+          +   Y+ LI    K  +   A  LF  M + GC P+   Y+ALI
Sbjct: 495 QARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALI 554

Query: 54  TAHLHTRDKAKALAKALGYFQKMKGMERC---------------KPNIVTYNILLRACAQ 98
             H     KA  + KA   F++M G +                 +PN+VTY  LL    +
Sbjct: 555 DGHC----KAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCK 610

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
           +  V++   L   +      P+   Y+ ++D   K G + E + V + M  +     + T
Sbjct: 611 SHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYT 670

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           ++ LID Y K +  D   +V   ++ +   P +  +  MI    K     +A  + Q M 
Sbjct: 671 YSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMME 730

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
                P+ +TY  +I  +G    +    E+ + +   G      T   +++  C NG   
Sbjct: 731 EKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALD 790

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
            A  L E          ++ Y+ + + + K  ++ L   LL  + Q+   P
Sbjct: 791 VAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESL--GLLDEIGQDDTAP 839



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 149/377 (39%), Gaps = 66/377 (17%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD--------------PSV--YNALITAHL 57
           YS LI    K GQ   A  +F  M  S   PD              P+V  Y AL+    
Sbjct: 550 YSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFC 609

Query: 58  --HTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 115
             H  ++A+ L  A+        ME C+PN + Y+ L+    +   +D+   +  E+ E 
Sbjct: 610 KSHRVEEARKLLDAMS-------MEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEH 662

Query: 116 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 175
                +YTY+ ++D Y K         VLS+M  N C P+++ +  +ID   K    D+ 
Sbjct: 663 GFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEA 722

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY---VFQKMTAMKYTPSFITYECI 232
            ++ + +     +P + T+ +MI  +G   + GK E    + ++M +    P+++TY  +
Sbjct: 723 YKLMQMMEEKGCQPNVVTYTAMIDGFG---MIGKIETCLELLERMGSKGVAPNYVTYRVL 779

Query: 233 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN-----GLPTEAD------ 281
           I        +  A  + +E+ +       +    ++E +        GL  E        
Sbjct: 780 IDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAP 839

Query: 282 ------LLFEN------------------SHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
                 LL +N                  + +  +   SSTY  L ++   AN  E   +
Sbjct: 840 FLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQ 899

Query: 318 LLKRMEQNGIVPNKRFF 334
           L   M + G++P  + F
Sbjct: 900 LFSEMTKKGVIPEMQSF 916



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/380 (17%), Positives = 155/380 (40%), Gaps = 43/380 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +Q  Y     +Y+ L+ ++ +    ++      ++R+     D  V+   +   +    +
Sbjct: 116 RQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDD----DKEVFGQFLNVLVRKHCR 171

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL----- 117
             + + AL    ++K   R +P+  TYN L++A  +A  +D  + + +E+  + L     
Sbjct: 172 NGSFSIALEELGRLKDF-RFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGF 230

Query: 118 ---------------------------APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
                                       PD   Y  ++    +  + +E    L+RM++ 
Sbjct: 231 TLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRAT 290

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
            C P+++T++ L+     ++   + ++V   +M     P+   FNS++  Y  +     A
Sbjct: 291 SCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYA 350

Query: 211 EYVFQKMTAMKYTPSFITYECII-TMYGYCDNVS-----RAREIFDELSKLGKDMKVSTL 264
             + +KM    + P ++ Y  +I ++ G  D+++      A + + E+   G  +    +
Sbjct: 351 YKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINV 410

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           ++     C  G   +A  +       G  PD+STY  +      A+  EL   L + M++
Sbjct: 411 SSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKR 470

Query: 325 NGIVPNKRFFLEALETFSSS 344
            G+V +   +   +++F  +
Sbjct: 471 GGLVADVYTYTIMVDSFCKA 490



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 144/337 (42%), Gaps = 25/337 (7%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           ++ DT  Y+KLI+ + +      AM   + MR + C P+   Y+ L+   L+        
Sbjct: 257 FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNK------- 309

Query: 67  AKALGYFQK---MKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            K LG  ++   M  ME C P+   +N L+ A   + +      L K++ +    P    
Sbjct: 310 -KQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVV 368

Query: 124 YNGVMDAYGKN------GMIKEMESVLSRMKSNQC---KPDIITFNLLIDSYGKRQAFDK 174
           YN ++ +   +       ++   E   S M +      K ++ +F   + S GK   ++K
Sbjct: 369 YNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGK---YEK 425

Query: 175 MEQVFKSLMHSKEKPTLPTFNSMIINY-GKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
              V + ++     P   T+ S ++NY   A     A  +F++M          TY  ++
Sbjct: 426 AFSVIREMIGQGFIPDTSTY-SKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMV 484

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
             +     + +AR+ F+E+ ++G    V T  A++ AY      + A+ LFE   + G  
Sbjct: 485 DSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCL 544

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           P+  TY  L   + KA   E   ++ +RM  +  VP+
Sbjct: 545 PNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPD 581



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 130/323 (40%), Gaps = 53/323 (16%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK---AKALAKA 69
           +Y  LI  + K G+   A  + +EM   G       Y++LI  +   + +   +K L+K 
Sbjct: 635 VYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKM 694

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L           C PN+V Y  ++    +    D+   L + + E    P++ TY  ++D
Sbjct: 695 LE--------NSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 746

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD-------KMEQ----- 177
            +G  G I+    +L RM S    P+ +T+ +LID   K  A D       +M+Q     
Sbjct: 747 GFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPT 806

Query: 178 ---------------------VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
                                +   +      P L  +  +I N  KA+    A  + ++
Sbjct: 807 HTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEE 866

Query: 217 M-----TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
           +     T + Y+    TY  +I      + V  A ++F E++K G   ++ +  ++++  
Sbjct: 867 VATFSATLVDYSS---TYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGL 923

Query: 272 CMNGLPTEADLLFENSHNMGVTP 294
             N   +EA LL +   +M V P
Sbjct: 924 FRNSKISEALLLLDFISHM-VCP 945


>gi|297827821|ref|XP_002881793.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
 gi|297327632|gb|EFH58052.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
          Length = 822

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 163/373 (43%), Gaps = 32/373 (8%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH---- 56
           M+ Q+ Y A   IY+ +I +  +      A  LF EM+   C+PD   Y+ALI AH    
Sbjct: 133 MKSQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAG 192

Query: 57  -----------------LHTRDKAKALAKALGYFQKMK-GMERCK--------PNIVTYN 90
                              +R     L  A G     +  +E CK        P++VT+N
Sbjct: 193 QWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWRQALEVCKKMTDNGVGPDLVTHN 252

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM--K 148
           I+L A    R   +  + F+ +  + + PD  T+N ++    K G   +   V + M  K
Sbjct: 253 IVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDVFNSMRDK 312

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
             +C+PD++TF  ++  Y  R   +    VF++++    KP + ++N+++  Y    +  
Sbjct: 313 RAECRPDVVTFTSIMHLYSVRGEIENCRAVFEAMLAEGLKPNIVSYNALMGAYAVHGMSE 372

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A  VF  +      P  ++Y  ++  YG      +A+E+F  + K  +   V T NA++
Sbjct: 373 NALSVFGDIKRNGIVPDVVSYTSLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALI 432

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           +AY  NG   EA  +F      G  P+  +   L  A +++  K  V+ +L   +  GI 
Sbjct: 433 DAYGSNGFLAEAVEIFRQMEQDGTKPNVVSVCTLLAACSRSKKKVNVETVLSAAQSRGIN 492

Query: 329 PNKRFFLEALETF 341
            N   +  A+ ++
Sbjct: 493 LNTAAYNSAIGSY 505



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 159/368 (43%), Gaps = 46/368 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI   G  G  R A+ +  +M ++G  PD   +N +++A+   R  +KAL+    YF
Sbjct: 216 YNNLINACGSSGNWRQALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALS----YF 271

Query: 74  QKMKGME------------------------------------RCKPNIVTYNILLRACA 97
           + MKG +                                     C+P++VT+  ++   +
Sbjct: 272 ELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDVFNSMRDKRAECRPDVVTFTSIMHLYS 331

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
               ++   A+F+ +    L P+I +YN +M AY  +GM +   SV   +K N   PD++
Sbjct: 332 VRGEIENCRAVFEAMLAEGLKPNIVSYNALMGAYAVHGMSENALSVFGDIKRNGIVPDVV 391

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           ++  L++SYG+ +   K ++VF  +   + KP + T+N++I  YG      +A  +F++M
Sbjct: 392 SYTSLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQM 451

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL---GKDMKVSTLNAMLEAYCMN 274
                 P+ ++   + T+   C    +   +   LS     G ++  +  N+ + +Y   
Sbjct: 452 EQDGTKPNVVS---VCTLLAACSRSKKKVNVETVLSAAQSRGINLNTAAYNSAIGSYINA 508

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
               +A  L++      V  DS T+ +L     + +        LK ME   I   K  +
Sbjct: 509 AELEKAIALYQTMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVY 568

Query: 335 LEALETFS 342
              L  +S
Sbjct: 569 SSVLCAYS 576



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 163/362 (45%), Gaps = 50/362 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRN--SGCRPDPSVYNALITAHLHTRDKAKALA 67
           DT  ++ +I  + K GQ+  A+ +F+ MR+  + CRPD   + +++  HL++        
Sbjct: 282 DTTTFNIIIYCLSKLGQSSQALDVFNSMRDKRAECRPDVVTFTSIM--HLYSVRGEIENC 339

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A+  F+ M   E  KPNIV+YN L+ A A     +   ++F ++  + + PD+ +Y  +
Sbjct: 340 RAV--FEAMLA-EGLKPNIVSYNALMGAYAVHGMSENALSVFGDIKRNGIVPDVVSYTSL 396

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +++YG++    + + V   M+  + KP+++T+N LID+YG      +  ++F+ +     
Sbjct: 397 LNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGT 456

Query: 188 KPTLPT-----------------------------------FNSMIINYGKARLQGKAEY 212
           KP + +                                   +NS I +Y  A    KA  
Sbjct: 457 KPNVVSVCTLLAACSRSKKKVNVETVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIA 516

Query: 213 VFQKMTAMKYTPSFITYECIIT----MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           ++Q M   K     +T+  +I+    M  Y + +S  +E+ D    L K++  S L    
Sbjct: 517 LYQTMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLC--- 573

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
            AY   G  TEA+ +F      G  PD   Y  +  AY  +       +L   ME NGI 
Sbjct: 574 -AYSKQGQVTEAESIFNQMKMAGCKPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIE 632

Query: 329 PN 330
           P+
Sbjct: 633 PD 634



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 128/285 (44%), Gaps = 7/285 (2%)

Query: 73  FQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           F+ MK  +  C  N + YN+++R  A+   VDQ   LF E+ +    PD  TY+ +++A+
Sbjct: 130 FKWMKSQKNYCARNDI-YNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAH 188

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           G+ G  +   +++  M      P   T+N LI++ G    + +  +V K +  +   P L
Sbjct: 189 GRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWRQALEVCKKMTDNGVGPDL 248

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T N ++  Y   R   KA   F+ M   K  P   T+  II         S+A ++F+ 
Sbjct: 249 VTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDVFNS 308

Query: 252 LSKLGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +     + +  V T  +++  Y + G       +FE     G+ P+  +Y  L  AY   
Sbjct: 309 MRDKRAECRPDVVTFTSIMHLYSVRGEIENCRAVFEAMLAEGLKPNIVSYNALMGAYAVH 368

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAK 354
            M E    +   +++NGIVP+   +   L ++  S    Q G AK
Sbjct: 369 GMSENALSVFGDIKRNGIVPDVVSYTSLLNSYGRS---RQPGKAK 410



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 122/278 (43%), Gaps = 5/278 (1%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ L+   G+  Q   A  +F  MR    +P+   YNALI A+         LA
Sbjct: 387 VPDVVSYTSLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAY----GSNGFLA 442

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A+  F++M+  +  KPN+V+   LL AC++++    V  +        +  +   YN  
Sbjct: 443 EAVEIFRQME-QDGTKPNVVSVCTLLAACSRSKKKVNVETVLSAAQSRGINLNTAAYNSA 501

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           + +Y     +++  ++   M+  + K D +TF +LI    +   + +     K +     
Sbjct: 502 IGSYINAAELEKAIALYQTMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSI 561

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
             T   ++S++  Y K     +AE +F +M      P  I Y  ++  Y   +   +A E
Sbjct: 562 PLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCKPDVIAYTSMLHAYNASEKWGKACE 621

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
           +F E+   G +      +A++ A+   G P+   +L +
Sbjct: 622 LFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMD 659


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 162/362 (44%), Gaps = 21/362 (5%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+   +AD   Y+ ++    K G    A   F+EMR  GC P+   Y ALI A+L    K
Sbjct: 510 KRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYL----K 565

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILL----------RAC------AQARNVDQVN 106
           AK ++ A   F+ M   E C PNIVTY+ L+          +AC        +++V  V+
Sbjct: 566 AKKVSYANELFETMLS-EGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVD 624

Query: 107 ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
             FK+  ++   P++ TY  ++D + K+  ++E   +L  M    C+P+ I ++ LID  
Sbjct: 625 MYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGL 684

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
            K    D+ ++V   +       TL T++S+I  Y K + Q  A  V  KM      P+ 
Sbjct: 685 CKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNV 744

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           + Y  +I           A ++   + + G    V T  AM++ + M G       L E 
Sbjct: 745 VIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLER 804

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLA 346
             + GV P+  TY++L     K    ++   LL+ M+Q     +   + + +E F+    
Sbjct: 805 MGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFI 864

Query: 347 GS 348
            S
Sbjct: 865 ES 866



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 131/288 (45%), Gaps = 17/288 (5%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           KA    ++M G +   P+  TY+ +L     A  ++    LF+E+    L  D+YTY  +
Sbjct: 466 KAFSVIREMIG-QGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIM 524

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D++ K G+I++     + M+   C P+++T+  LI +Y K +      ++F++++    
Sbjct: 525 VDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGC 584

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT----------------PSFITYEC 231
            P + T++++I  + KA    KA  +F++M   K                  P+ +TY  
Sbjct: 585 LPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGA 644

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           ++  +     V  AR++ D +S  G +      +A+++  C  G   EA  +       G
Sbjct: 645 LLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHG 704

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
                 TY  L   Y K   ++L  K+L +M +N   PN   + E ++
Sbjct: 705 FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMID 752



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 141/351 (40%), Gaps = 29/351 (8%)

Query: 2   QKQRWY--IADTGI------YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI 53
           Q ++W+  + + G       Y+ LI    K  +   A  LF  M + GC P+   Y+ALI
Sbjct: 536 QARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALI 595

Query: 54  TAHLHTRDKAKALAKALGYFQKMKGMERC---------------KPNIVTYNILLRACAQ 98
             H     KA  + KA   F++M G +                 +PN+VTY  LL    +
Sbjct: 596 DGHC----KAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCK 651

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
           +  V++   L   +      P+   Y+ ++D   K G + E + V + M  +     + T
Sbjct: 652 SHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYT 711

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           ++ LID Y K +  D   +V   ++ +   P +  +  MI    K     +A  + Q M 
Sbjct: 712 YSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMME 771

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
                P+ +TY  +I  +G    +    E+ + +   G      T   +++  C NG   
Sbjct: 772 EKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALD 831

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
            A  L E          ++ Y+ + + + K  ++ L   LL  + Q+   P
Sbjct: 832 VAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESL--GLLDEIGQDDTAP 880



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/380 (17%), Positives = 155/380 (40%), Gaps = 43/380 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +Q  Y     +Y+ L+ ++ +    ++      ++R+     D  V+   +   +    +
Sbjct: 157 RQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDD----DKEVFGEFLNVLVRKHCR 212

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL---------- 112
             + + AL    ++K   R +P+  TYN L++A  +A  +D  + + +E+          
Sbjct: 213 NGSFSIALEELGRLKDF-RFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGF 271

Query: 113 ---------------HESI-------LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
                           E++         PD   Y  ++    +  + +E    L+RM++ 
Sbjct: 272 TLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRAT 331

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
            C P+++T++ L+     ++   + ++V   +M     P+   FNS++  Y  +     A
Sbjct: 332 SCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYA 391

Query: 211 EYVFQKMTAMKYTPSFITYECII-TMYG-----YCDNVSRAREIFDELSKLGKDMKVSTL 264
             + +KM    + P ++ Y  +I ++ G      CD +  A + + E+   G  +    +
Sbjct: 392 YKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINV 451

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           ++     C  G   +A  +       G  PD+STY  +      A+  EL   L + M++
Sbjct: 452 SSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKR 511

Query: 325 NGIVPNKRFFLEALETFSSS 344
            G+V +   +   +++F  +
Sbjct: 512 GGLVADVYTYTIMVDSFCKA 531



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 144/337 (42%), Gaps = 25/337 (7%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           ++ DT  Y+KLI+ + +      AM   + MR + C P+   Y+ L+   L+        
Sbjct: 298 FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNK------- 350

Query: 67  AKALGYFQK---MKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            K LG  ++   M  ME C P+   +N L+ A   + +      L K++ +    P    
Sbjct: 351 -KQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVV 409

Query: 124 YNGVMDAYGKN------GMIKEMESVLSRMKSNQC---KPDIITFNLLIDSYGKRQAFDK 174
           YN ++ +   +       ++   E   S M +      K ++ +F   + S GK   ++K
Sbjct: 410 YNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGK---YEK 466

Query: 175 MEQVFKSLMHSKEKPTLPTFNSMIINY-GKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
              V + ++     P   T+ S ++NY   A     A  +F++M          TY  ++
Sbjct: 467 AFSVIREMIGQGFIPDTSTY-SKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMV 525

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
             +     + +AR+ F+E+ ++G    V T  A++ AY      + A+ LFE   + G  
Sbjct: 526 DSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCL 585

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           P+  TY  L   + KA   E   ++ +RM  +  VP+
Sbjct: 586 PNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPD 622



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 130/323 (40%), Gaps = 53/323 (16%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK---AKALAKA 69
           +Y  LI  + K G+   A  + +EM   G       Y++LI  +   + +   +K L+K 
Sbjct: 676 VYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKM 735

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L           C PN+V Y  ++    +    D+   L + + E    P++ TY  ++D
Sbjct: 736 LE--------NSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 787

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD-------KMEQ----- 177
            +G  G I+    +L RM S    P+ +T+ +LID   K  A D       +M+Q     
Sbjct: 788 GFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPT 847

Query: 178 ---------------------VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
                                +   +      P L  +  +I N  KA+    A  + ++
Sbjct: 848 HTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEE 907

Query: 217 M-----TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
           +     T + Y+    TY  +I      + V  A ++F E++K G   ++ +  ++++  
Sbjct: 908 VATFSATLVDYSS---TYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGL 964

Query: 272 CMNGLPTEADLLFENSHNMGVTP 294
             N   +EA LL +   +M V P
Sbjct: 965 FRNSKISEALLLLDFISHM-VCP 986


>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 860

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 149/312 (47%), Gaps = 5/312 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q  +  D   Y+ ++  +G+  Q      L  EM   GC+P+   YN LI    H+ 
Sbjct: 354 LKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLI----HSY 409

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +A  L +A+  F +M+    CKP+ VTY  L+   A+A  +D    +++ +    L+PD
Sbjct: 410 GRANYLNEAMNVFNQMQ-EAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPD 468

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            +TY+ +++  GK G +     +   M    C P+++T+N+++D + K + +    ++++
Sbjct: 469 TFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYR 528

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            + ++  +P   T++ ++   G      +AE VF +M    + P    Y  ++ ++G   
Sbjct: 529 DMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAG 588

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           NV +A + +  +   G    V T N++L  +       EA  L +N   +G+ P   TY 
Sbjct: 589 NVEKAWQWYQAMLHAGLLPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYT 648

Query: 301 LLYKAYTKANMK 312
           LL    T    K
Sbjct: 649 LLLSCCTDGRSK 660



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 121/275 (44%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             ALG+F  +K     K +  TY  ++    +A+    +N L  E+      P+  TYN 
Sbjct: 345 GNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNR 404

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++ +YG+   + E  +V ++M+   CKPD +T+  LID + K    D    +++ +    
Sbjct: 405 LIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGG 464

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P   T++ +I   GKA     A  +F +M     TP+ +TY  ++ ++    N   A 
Sbjct: 465 LSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSAL 524

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           +++ ++   G +    T + ++E     G   EA+ +F         PD   Y LL   +
Sbjct: 525 KLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLW 584

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            KA   E   +  + M   G++PN       L TF
Sbjct: 585 GKAGNVEKAWQWYQAMLHAGLLPNVPTCNSLLSTF 619


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 156/323 (48%), Gaps = 15/323 (4%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---HLHTRDKAKALAKA 69
           IY+ +I  +        A+ LF+EM N G RP+   YN+LI     +    D ++ L+  
Sbjct: 258 IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +          +  PN+VT++ L+ A  +   + +   L+ E+ +  + PDI+TY+ +++
Sbjct: 318 IE--------RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 369

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +  +  + E + +   M S  C P+++T+N LI  + K +  D+  ++F+ +       
Sbjct: 370 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVG 429

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRARE 247
              T+ ++I  + +AR    A+ VF++M +    P  +TY   I + G C+N  V  A  
Sbjct: 430 NTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYS--ILLDGLCNNGKVETALV 487

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F+ L +   +  + T N M+E  C  G   +   LF +    GV P+  TY  +   + 
Sbjct: 488 VFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFC 547

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           +  +KE    L + M++ G +P+
Sbjct: 548 RKGLKEEADALFREMKEEGPLPD 570



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 136/311 (43%), Gaps = 44/311 (14%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKALAKALG 71
           +S LI    K+G+   A  L+ EM      PD   Y++LI    +H R D+AK +     
Sbjct: 329 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM----- 383

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            F+ M   + C PN+VTYN L++   +A+ VD+   LF+E+ +  L  +  TY  ++  +
Sbjct: 384 -FELMISKD-CFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGF 441

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            +       + V  +M S+   PDI+T+++L+D        +    VF+ L  SK +P +
Sbjct: 442 FQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDI 501

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+N MI    KA   GK E                                   ++F  
Sbjct: 502 YTYNIMIEGMCKA---GKVE--------------------------------DGWDLFCS 526

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           LS  G    V T   M+  +C  GL  EAD LF      G  PDS TY  L +A+ +   
Sbjct: 527 LSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGD 586

Query: 312 KELVQKLLKRM 322
           K    +L++ M
Sbjct: 587 KAASAELIREM 597



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 147/324 (45%), Gaps = 5/324 (1%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D+  ++ LI  + +  +   A+ L   M   GC+PD   Y  ++       D    +
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGD----I 237

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             AL   +KM+   + +P +V YN ++ A    +NV+    LF E+    + P++ TYN 
Sbjct: 238 DLALSLLKKME-QGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 296

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++      G   +   +LS M   +  P+++TF+ LID++ K     + E+++  ++   
Sbjct: 297 LIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 356

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P + T++S+I  +       +A+++F+ M +    P+ +TY  +I  +     V    
Sbjct: 357 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGM 416

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+F E+S+ G      T   ++  +        A ++F+   + GV PD  TY +L    
Sbjct: 417 ELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGL 476

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
                 E    + + ++++ + P+
Sbjct: 477 CNNGKVETALVVFEYLQRSKMEPD 500



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 157/366 (42%), Gaps = 46/366 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +SKL++ + K  +  L + L  +M+N G   +   Y+ LI        +   L+ AL   
Sbjct: 84  FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFC----RRSQLSLALAVL 139

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM  +   +P+IVT N LL        +    +L  ++ E    PD +T+N ++    +
Sbjct: 140 AKMMKLGY-EPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFR 198

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD-------KMEQ--------- 177
           +    E  +++ RM    C+PD++T+ ++++   KR   D       KMEQ         
Sbjct: 199 HNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVI 258

Query: 178 -------------------VFKSLMHSKEKPTLPTFNSMI---INYGKARLQGKAEYVFQ 215
                              +F  + +   +P + T+NS+I    NYG+      A  +  
Sbjct: 259 YNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGR---WSDASRLLS 315

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            M   K  P+ +T+  +I  +     +  A +++DE+ K   D  + T ++++  +CM+ 
Sbjct: 316 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 375

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335
              EA  +FE   +    P+  TY  L K + KA   +   +L + M Q G+V N   + 
Sbjct: 376 RLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYT 435

Query: 336 EALETF 341
             +  F
Sbjct: 436 TLIHGF 441



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 142/303 (46%), Gaps = 9/303 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ L  +M   G +PD   +N LI  H   R    + A AL     +KG   C+P++VTY
Sbjct: 170 AVSLVGQMVEMGYQPDSFTFNTLI--HGLFRHNRASEAVALVDRMVVKG---CQPDLVTY 224

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
            I++    +  ++D   +L K++ +  + P +  YN ++DA      + +  ++ + M +
Sbjct: 225 GIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDN 284

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
              +P+++T+N LI        +    ++   ++  K  P + TF+++I  + K     +
Sbjct: 285 KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE 344

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAM 267
           AE ++ +M      P   TY  +I  +   D +  A+ +F+ +  + KD    V T N +
Sbjct: 345 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM--ISKDCFPNVVTYNTL 402

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           ++ +C      E   LF      G+  ++ TY  L   + +A   +  Q + K+M  +G+
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGV 462

Query: 328 VPN 330
           +P+
Sbjct: 463 LPD 465



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 114/260 (43%), Gaps = 4/260 (1%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+IV ++ LL A A+    D V +L +++    ++ ++YTY+ +++ + +   +    +V
Sbjct: 79  PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAV 138

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L++M     +PDI+T N L++ +           +   ++    +P   TFN++I    +
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFR 198

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKV 261
                +A  +  +M      P  +TY  ++   G C   ++  A  +  ++ +   +  V
Sbjct: 199 HNRASEAVALVDRMVVKGCQPDLVTYGIVVN--GLCKRGDIDLALSLLKKMEQGKIEPGV 256

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
              N +++A C      +A  LF    N G+ P+  TY  L +            +LL  
Sbjct: 257 VIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSD 316

Query: 322 MEQNGIVPNKRFFLEALETF 341
           M +  I PN   F   ++ F
Sbjct: 317 MIERKINPNVVTFSALIDAF 336



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 12/142 (8%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   YS L+  +   G+   A+ +F  ++ S   PD   YN +I        KA  + 
Sbjct: 463 LPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMC----KAGKVE 518

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
                F  +  ++  KPN+VTY  ++    +    ++ +ALF+E+ E    PD  TYN +
Sbjct: 519 DGWDLFCSLS-LKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTL 577

Query: 128 MDAYGKNG-------MIKEMES 142
           + A+ ++G       +I+EM S
Sbjct: 578 IRAHLRDGDKAASAELIREMRS 599



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/228 (20%), Positives = 87/228 (38%), Gaps = 1/228 (0%)

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           D VN LF ++ +S   P I  ++ ++ A  K      + S+  +M++     ++ T+++L
Sbjct: 64  DAVN-LFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIL 122

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           I+ + +R        V   +M    +P + T NS++  +        A  +  +M  M Y
Sbjct: 123 INCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGY 182

Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
            P   T+  +I      +  S A  + D +   G    + T   ++   C  G    A  
Sbjct: 183 QPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALS 242

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           L +      + P    Y  +  A            L   M+  GI PN
Sbjct: 243 LLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPN 290


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 157/344 (45%), Gaps = 12/344 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G+   A  L  EMR+ G  P  +V+N +I        KA     ALGYF
Sbjct: 33  YGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLC----KAGRFGDALGYF 88

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH-ESILAPDIYTYNGVMDAYG 132
           + + G  +C P+I+T+NIL+ A  ++  V++   +F+ +H  S   P++ TY  V++   
Sbjct: 89  KTVAGT-KCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLC 147

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K+G +     +L  M    C P++IT+++L++   K    DK   + + +     +P + 
Sbjct: 148 KDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVI 207

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            +N+++    K+R   +A  + Q M      P+ +TY  ++ ++     V RA  +   +
Sbjct: 208 MYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVM 267

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK---- 308
           S+ G    V   N ++   C +    +A  L +        PD  TY  +     K    
Sbjct: 268 SERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRV 327

Query: 309 -ANMK-ELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
            A+ K E   ++L+ M+Q G  PN   +   +E    +    Q+
Sbjct: 328 DADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQA 371



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 159/346 (45%), Gaps = 26/346 (7%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R       +++ +I  + K G+   A+  F  +  + C PD   +N L+ A +    K
Sbjct: 57  RDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALV----K 112

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +  + +A   F+ M    +C PN+VTY  ++    +   +D+   L   ++E+   P++ 
Sbjct: 113 SGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVI 172

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY+ +++   K G   +  ++L  M     +PD+I +N L++   K +  D+  ++ + +
Sbjct: 173 TYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLM 232

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           + S   PT+ T+NS++  + +++   +A  + Q M+     P  I Y  +I   G C + 
Sbjct: 233 IRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIA--GLCRD- 289

Query: 243 SRAREIFDELSKLGKDM-------KVSTLNAMLEAYCMNGLPTEADLLFENSHNM----- 290
             AR   D+   L K M        V T + +++  C +    +AD   E +  +     
Sbjct: 290 --AR--LDDAQALLKQMVAARCVPDVITYSTIIDGLCKD-WRVDADWKLEAACEILEMMK 344

Query: 291 --GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
             G  P++ TY ++ +   +A   +    LL+RM  + +VP+   F
Sbjct: 345 QTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSF 390



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 154/330 (46%), Gaps = 14/330 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R +  D  +Y+ L+  + K  +   A+ L   M  SGC P    YN+L+   L  R  +
Sbjct: 199 RRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLM--ELFCR--S 254

Query: 64  KALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           K + +A    Q M   ER C P+++ YN ++    +   +D   AL K++  +   PD+ 
Sbjct: 255 KQVDRAFRLIQVMS--ERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVI 312

Query: 123 TYNGVMDAYGKNGMIK---EMES---VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           TY+ ++D   K+  +    ++E+   +L  MK   C P+  T+ ++I+   + +   +  
Sbjct: 313 TYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQAL 372

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
            + + ++ S+  P L +F+ +I +  K+     A  +F  M+  +  P+ + Y  +I   
Sbjct: 373 ALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGL 432

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                V +A  +F+ + +  +   V+T N++L+  C  G   EA  + E   +    PD 
Sbjct: 433 SKGGEVDKAVRVFELMVESFRP-GVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDG 491

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           ++Y  L +   + +  E   +L + +E  G
Sbjct: 492 ASYGALIRGLCRVSCVEEAYELFQAVEAKG 521



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 111/253 (43%), Gaps = 3/253 (1%)

Query: 80  ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
           ERC PN  TY  L+    +A  +DQ   L  E+ +  + P +  +NGV+    K G   +
Sbjct: 24  ERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGD 83

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK--PTLPTFNSM 197
                  +   +C PDIITFN+L+D+  K    ++  Q+F+S MH+  +  P + T+ ++
Sbjct: 84  ALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFES-MHTSSQCLPNVVTYTTV 142

Query: 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK 257
           I    K     +A  +   M      P+ ITY  ++          +   +  E+++ G 
Sbjct: 143 INGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGF 202

Query: 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
              V   N +L   C +    EA  L +     G  P   TY  L + + ++   +   +
Sbjct: 203 QPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFR 262

Query: 318 LLKRMEQNGIVPN 330
           L++ M + G  P+
Sbjct: 263 LIQVMSERGCPPD 275



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 119/271 (43%), Gaps = 4/271 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT-RDK 62
           +R    D   Y+ +IA + +  +   A  L  +M  + C PD   Y+ +I       R  
Sbjct: 269 ERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVD 328

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A    +A     +M     C PN  TY +++    +AR   Q  AL + + +S + PD+ 
Sbjct: 329 ADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLS 388

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +++ V+ +  K+  +     +   M   +CKP+ + +  LID   K    DK  +VF+ L
Sbjct: 389 SFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFE-L 447

Query: 183 MHSKEKPTLPTFNSMIINY-GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           M    +P + T+NS++    G  R++ +A  + + M   +  P   +Y  +I        
Sbjct: 448 MVESFRPGVATYNSVLDGLCGVGRIE-EAVRMVEGMIHKECFPDGASYGALIRGLCRVSC 506

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           V  A E+F  +   G  M+V   N ++   C
Sbjct: 507 VEEAYELFQAVEAKGFAMEVGVYNVLVNELC 537



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 111/258 (43%), Gaps = 12/258 (4%)

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           N+L+RA    + V     LF+E       P+ +TY  ++    K G + +   +L  M+ 
Sbjct: 6   NLLVRAGQHGQAVQ----LFREER---CVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRD 58

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
               P +   N +I    K   F      FK++  +K  P + TFN ++    K+    +
Sbjct: 59  RGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEE 118

Query: 210 AEYVFQKM-TAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNA 266
           A  +F+ M T+ +  P+ +TY  +I   G C +  + RA E+ D +++ G    V T + 
Sbjct: 119 AFQIFESMHTSSQCLPNVVTYTTVIN--GLCKDGKLDRAIELLDLMNETGCCPNVITYSV 176

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           ++E  C  G   +   L +     G  PD   Y  L     K+   +   +L++ M ++G
Sbjct: 177 LVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSG 236

Query: 327 IVPNKRFFLEALETFSSS 344
             P    +   +E F  S
Sbjct: 237 CYPTVVTYNSLMELFCRS 254



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M KQ     + G Y+ +I  + +  +++ A+ L   M +S   PD S ++ +I +   + 
Sbjct: 342 MMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSH 401

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           D    L  A   F  M   E CKPN V Y  L+   ++   VD+   +F+ + ES   P 
Sbjct: 402 D----LDAAYKIFGMMSERE-CKPNPVAYAALIDGLSKGGEVDKAVRVFELMVES-FRPG 455

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TYN V+D     G I+E   ++  M   +C PD  ++  LI    +    ++  ++F+
Sbjct: 456 VATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQ 515

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           ++        +  +N ++    K +    A  V  K+    Y
Sbjct: 516 AVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGY 557



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 8/182 (4%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   +S +I  + K      A  +F  M    C+P+P  Y ALI        K   + 
Sbjct: 384 VPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGL----SKGGEVD 439

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNG 126
           KA+  F+ M  +E  +P + TYN +L   C   R  + V  +   +H+    PD  +Y  
Sbjct: 440 KAVRVFELM--VESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECF-PDGASYGA 496

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++    +   ++E   +   +++     ++  +N+L++   K++       V   L+ + 
Sbjct: 497 LIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556

Query: 187 EK 188
            K
Sbjct: 557 YK 558


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 152/326 (46%), Gaps = 44/326 (13%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D   YS +I  + K G T +A+ L  +M   GC+P+  VY+ +I +      K K +
Sbjct: 78  YEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLC----KDKLI 133

Query: 67  AKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            +A+ +  +M  +G+    PN+VTY+ +L         ++  +LFK++ E  + PD  T+
Sbjct: 134 TEAMEFLSEMVNRGI---SPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTF 190

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++D   K GMI E + V   M     +P++ T+N L+D Y  +   D+ +++F  ++ 
Sbjct: 191 NILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVR 250

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P++ ++N +I  + K+    +A+ +  +M+    TP  +TY               
Sbjct: 251 KGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTY--------------- 295

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
                               + +++ +C +G P +A  L E   + G+ PD  TY ++  
Sbjct: 296 --------------------STLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLD 335

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
              K    +   +LLK M+++ I PN
Sbjct: 336 GLCKQGHLDEAFELLKAMQESKIEPN 361



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 151/308 (49%), Gaps = 23/308 (7%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--D 61
           +R  + DT  ++ L+  + K+G    A  +F  M   G  P+ + YNAL+  +      D
Sbjct: 180 ERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMD 239

Query: 62  KAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
           +A+ L      F  M  KG   C P++ +YNIL++   ++  +D+   L  E+    L P
Sbjct: 240 EAQKL------FNIMVRKG---CAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTP 290

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D  TY+ +M  + ++G  ++ + +L  M+S    PD++T+++++D   K+   D+  ++ 
Sbjct: 291 DTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELL 350

Query: 180 KSLMHSKEKPTLPTFNSMI---INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT-- 234
           K++  SK +P +  +  +I    N+GK      A  +F  +      P  +TY  +I+  
Sbjct: 351 KAMQESKIEPNIFIYTILIQGMCNFGKLE---AARELFSNLFVKGIQPDVVTYTVMISGL 407

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
           + G   N   A E+F +++  G      T N +++ +  NG  + A  L E     G + 
Sbjct: 408 LKGGLSN--EACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSA 465

Query: 295 DSSTYKLL 302
           DSST+++L
Sbjct: 466 DSSTFQML 473



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 136/296 (45%), Gaps = 7/296 (2%)

Query: 37  MRNSGCRPDPSVYNALITAHLHT-RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95
           M  S  RPD      LI    H+  D        LG   K+ G++   PN VT++ LL  
Sbjct: 1   MDLSNIRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKL-GLQ---PNHVTFSTLLNG 56

Query: 96  -CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
             ++A+ +D V  LF E+ +    PD+ TY+ +++   K G       +L +M+   CKP
Sbjct: 57  LSSKAKIIDAVK-LFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKP 115

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           +++ ++ +IDS  K +   +  +    +++    P + T++S++  +       +A  +F
Sbjct: 116 NVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLF 175

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           ++M      P  +T+  ++        +  A+ +F+ + + G +  V+T NA+++ YC  
Sbjct: 176 KQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQ 235

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
               EA  LF      G  P   +Y +L K + K+   +  + LL  M    + P+
Sbjct: 236 SQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPD 291



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 114/256 (44%), Gaps = 10/256 (3%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESI---LAPDIYTYNGVMDAYGKNGMIKE 139
           +P++ T  IL+  C    N D  +  F  L       L P+  T++ +++       I +
Sbjct: 7   RPDVYTLTILIN-CFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIID 65

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
              +   M     +PD+IT++ +I+   K  +     Q+ K +     KP +  ++++I 
Sbjct: 66  AVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIID 125

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE---IFDELSKLG 256
           +  K +L  +A     +M     +P+ +TY  I  ++G+C N+ R+ E   +F ++ +  
Sbjct: 126 SLCKDKLITEAMEFLSEMVNRGISPNVVTYSSI--LHGFC-NLGRSNEATSLFKQMVERN 182

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
                 T N +++     G+  EA  +FE     GV P+ +TY  L   Y   +  +  Q
Sbjct: 183 VMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQ 242

Query: 317 KLLKRMEQNGIVPNKR 332
           KL   M + G  P+ R
Sbjct: 243 KLFNIMVRKGCAPSVR 258


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 157/327 (48%), Gaps = 15/327 (4%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---HLHTRDKAKA 65
           A+  IY+ +I  + K      A  LF++M   G +PD   YN+LI+    +    D ++ 
Sbjct: 254 ANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRL 313

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L+  +          +  PN+VT+N L+ A A+   + +   LF E+ +  + P+I TYN
Sbjct: 314 LSDMIE--------RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYN 365

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++ +  +  + E + + + M S  C PD++T+N LI  + K +  ++  ++F+ +   
Sbjct: 366 SLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQR 425

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVS 243
                  T+N++I    +A     A+ +F+KM +    P  ITY   I + G C    + 
Sbjct: 426 GLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS--ILLDGLCKYGKLE 483

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           +A  +F+ L K   +  + T N M+E  C  G   +   LF +    GV P+   Y  + 
Sbjct: 484 KALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMI 543

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
             + +  +KE    L + M+++G +P+
Sbjct: 544 SGFCRKGLKEEADALFREMKEDGTLPD 570



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 147/325 (45%), Gaps = 7/325 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  DT  ++ LI  +    +   A+ L   M   GC+PD   Y  ++       D    +
Sbjct: 182 YKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGD----I 237

Query: 67  AKALGYFQKM-KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
             AL   +KM KG  + + N+V YN ++    + +++D    LF ++    + PD++TYN
Sbjct: 238 DLALSLLKKMEKG--KIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYN 295

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++      G   +   +LS M   +  P+++TFN LID++ K     + E++F  ++  
Sbjct: 296 SLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR 355

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P + T+NS+I  +       +A+ +F  M +    P  +TY  +I  +     V   
Sbjct: 356 SIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEG 415

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            E+F E+S+ G      T N +++     G    A  +F+   + GV PD  TY +L   
Sbjct: 416 MELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDG 475

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
             K    E    + + ++++ + PN
Sbjct: 476 LCKYGKLEKALVVFEYLQKSKMEPN 500



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 136/318 (42%), Gaps = 42/318 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTRDKAKALAKALGY 72
           ++ LI    K+G+   A  LF EM      P+   YN+LI    +H R     L +A   
Sbjct: 329 FNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDR-----LDEAQQI 383

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F  M   + C P++VTYN L++   +A+ V++   LF+E+ +  L  +  TYN ++    
Sbjct: 384 FTLMVSKD-CLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLF 442

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + G     + +  +M S+   PDIIT+++L+D   K    +K   VF+ L  SK +P + 
Sbjct: 443 QAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIY 502

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N MI    KA   GK E                                   ++F  L
Sbjct: 503 TYNIMIEGMCKA---GKVE--------------------------------DGWDLFCSL 527

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           S  G    V     M+  +C  GL  EAD LF      G  PDS  Y  L +A  +   K
Sbjct: 528 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDK 587

Query: 313 ELVQKLLKRMEQNGIVPN 330
               +L+K M   G V +
Sbjct: 588 AASAELIKEMRSCGFVGD 605



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 151/355 (42%), Gaps = 46/355 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +SKL++ + K  +  + + L  +M+N G   +   Y+ L+           ALA  LG  
Sbjct: 84  FSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCRRSQLPLALA-VLGKM 142

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+ G E   P+IVT + LL      + + +  AL  ++ E    PD  T+N ++     
Sbjct: 143 MKL-GYE---PDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFL 198

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD-------KMEQ--------- 177
           +    E  +++ RM +  C+PD+ T+  +++   KR   D       KME+         
Sbjct: 199 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVI 258

Query: 178 -------------------VFKSLMHSKEKPTLPTFNSMI---INYGKARLQGKAEYVFQ 215
                              +F  +     KP + T+NS+I    NYG+      A  +  
Sbjct: 259 YNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGR---WSDASRLLS 315

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            M   K  P+ +T+  +I  +     +  A ++FDE+ +   D  + T N+++  +CM+ 
Sbjct: 316 DMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHD 375

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              EA  +F    +    PD  TY  L K + KA   E   +L + M Q G+V N
Sbjct: 376 RLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGN 430



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 125/267 (46%), Gaps = 9/267 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR    +   Y+ LI       +   A  +F+ M +  C PD   YN LI        KA
Sbjct: 354 QRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFC----KA 409

Query: 64  KALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           K + + +  F++M  +G+     N VTYN L++   QA + D    +FK++    + PDI
Sbjct: 410 KRVEEGMELFREMSQRGL---VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDI 466

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TY+ ++D   K G +++   V   ++ ++ +P+I T+N++I+   K    +    +F S
Sbjct: 467 ITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCS 526

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           L     KP +  + +MI  + +  L+ +A+ +F++M      P    Y  +I       +
Sbjct: 527 LSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGD 586

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAML 268
            + + E+  E+   G     ST++ ++
Sbjct: 587 KAASAELIKEMRSCGFVGDASTISMVI 613



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 117/279 (41%), Gaps = 5/279 (1%)

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L  A+  F +M    R  P+I+ ++ LL A A+    D V +L +++    +  + YTY+
Sbjct: 62  LDDAVALFGEMVK-SRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++ + +   +    +VL +M     +PDI+T + L++ Y   +   +   +   ++  
Sbjct: 121 ILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEM 180

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVS 243
             KP   TFN++I          +A  +  +M A    P   TY  ++   G C   ++ 
Sbjct: 181 GYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVN--GLCKRGDID 238

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  +  ++ K   +  V   N +++  C      +A  LF      G+ PD  TY  L 
Sbjct: 239 LALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLI 298

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
                        +LL  M +  I PN   F   ++ F+
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFA 337


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 157/344 (45%), Gaps = 12/344 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G+   A  L  EMR+ G  P  +V+N +I        KA     ALGYF
Sbjct: 33  YGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLC----KAGRFGDALGYF 88

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH-ESILAPDIYTYNGVMDAYG 132
           + + G  +C P+I+T+NIL+ A  ++  V++   +F+ +H  S   P++ TY  V++   
Sbjct: 89  KTVAGT-KCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLC 147

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K+G +     +L  M    C P++IT+++L++   K    DK   + + +     +P + 
Sbjct: 148 KDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVI 207

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            +N+++    K+R   +A  + Q M      P+ +TY  ++ ++     V RA  +   +
Sbjct: 208 MYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVM 267

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK---- 308
           S+ G    V   N ++   C +    +A  L +        PD  TY  +     K    
Sbjct: 268 SERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRV 327

Query: 309 -ANMK-ELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
            A+ K E   ++L+ M+Q G  PN   +   +E    +    Q+
Sbjct: 328 DADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQA 371



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 159/346 (45%), Gaps = 26/346 (7%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R       +++ +I  + K G+   A+  F  +  + C PD   +N L+ A +    K
Sbjct: 57  RDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALV----K 112

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +  + +A   F+ M    +C PN+VTY  ++    +   +D+   L   ++E+   P++ 
Sbjct: 113 SGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVI 172

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY+ +++   K G   +  ++L  M     +PD+I +N L++   K +  D+  ++ + +
Sbjct: 173 TYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLM 232

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           + S   PT+ T+NS++  + +++   +A  + Q M+     P  I Y  +I   G C + 
Sbjct: 233 IRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIA--GLCRD- 289

Query: 243 SRAREIFDELSKLGKDM-------KVSTLNAMLEAYCMNGLPTEADLLFENSHNM----- 290
             AR   D+   L K M        V T + +++  C +    +AD   E +  +     
Sbjct: 290 --AR--LDDAQALLKQMVAARCVPDVITYSTIIDGLCKD-WRVDADWKLEAACEILEMMK 344

Query: 291 --GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
             G  P++ TY ++ +   +A   +    LL+RM  + +VP+   F
Sbjct: 345 QTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSF 390



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 154/330 (46%), Gaps = 14/330 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R +  D  +Y+ L+  + K  +   A+ L   M  SGC P    YN+L+   L  R  +
Sbjct: 199 RRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLM--ELFCR--S 254

Query: 64  KALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           K + +A    Q M   ER C P+++ YN ++    +   +D   AL K++  +   PD+ 
Sbjct: 255 KQVDRAFRLIQVMS--ERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVI 312

Query: 123 TYNGVMDAYGKNGMIK---EMES---VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           TY+ ++D   K+  +    ++E+   +L  MK   C P+  T+ ++I+   + +   +  
Sbjct: 313 TYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQAL 372

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
            + + ++ S+  P L +F+ +I +  K+     A  +F  M+  +  P+ + Y  +I   
Sbjct: 373 ALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGL 432

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                V +A  +F+ + +  +   V+T N++L+  C  G   EA  + E   +    PD 
Sbjct: 433 SKGGEVDKAVRVFELMVESFRP-GVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDG 491

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           ++Y  L +   + +  E   +L + +E  G
Sbjct: 492 ASYGALIRGLCRVSCVEEAYELFQAVEAKG 521



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 111/253 (43%), Gaps = 3/253 (1%)

Query: 80  ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
           ERC PN  TY  L+    +A  +DQ   L  E+ +  + P +  +NGV+    K G   +
Sbjct: 24  ERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGD 83

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK--PTLPTFNSM 197
                  +   +C PDIITFN+L+D+  K    ++  Q+F+S MH+  +  P + T+ ++
Sbjct: 84  ALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFES-MHTSSQCLPNVVTYTTV 142

Query: 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK 257
           I    K     +A  +   M      P+ ITY  ++          +   +  E+++ G 
Sbjct: 143 INGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGF 202

Query: 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
              V   N +L   C +    EA  L +     G  P   TY  L + + ++   +   +
Sbjct: 203 QPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFR 262

Query: 318 LLKRMEQNGIVPN 330
           L++ M + G  P+
Sbjct: 263 LIQVMSERGCPPD 275



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 119/271 (43%), Gaps = 4/271 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT-RDK 62
           +R    D   Y+ +IA + +  +   A  L  +M  + C PD   Y+ +I       R  
Sbjct: 269 ERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVD 328

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A    +A     +M     C PN  TY +++    +AR   Q  AL + + +S + PD+ 
Sbjct: 329 ADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLS 388

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +++ V+ +  K+  +     +   M   +CKP+ + +  LID   K    DK  +VF+ L
Sbjct: 389 SFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFE-L 447

Query: 183 MHSKEKPTLPTFNSMIINY-GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           M    +P + T+NS++    G  R++ +A  + + M   +  P   +Y  +I        
Sbjct: 448 MVESFRPGVATYNSVLDGLCGVGRIE-EAVRMVEGMIHKECFPDGASYGALIRGLCRVSC 506

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           V  A E+F  +   G  M+V   N ++   C
Sbjct: 507 VEEAYELFQAVEAKGFAMEVGVYNVLVNELC 537



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 111/258 (43%), Gaps = 12/258 (4%)

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           N+L+RA    + V     LF+E       P+ +TY  ++    K G + +   +L  M+ 
Sbjct: 6   NLLVRAGQHGQAVQ----LFREER---CVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRD 58

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
               P +   N +I    K   F      FK++  +K  P + TFN ++    K+    +
Sbjct: 59  RGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEE 118

Query: 210 AEYVFQKM-TAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNA 266
           A  +F+ M T+ +  P+ +TY  +I   G C +  + RA E+ D +++ G    V T + 
Sbjct: 119 AFQIFESMHTSSQCLPNVVTYTTVIN--GLCKDGKLDRAIELLDLMNETGCCPNVITYSV 176

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           ++E  C  G   +   L +     G  PD   Y  L     K+   +   +L++ M ++G
Sbjct: 177 LVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSG 236

Query: 327 IVPNKRFFLEALETFSSS 344
             P    +   +E F  S
Sbjct: 237 CYPTVVTYNSLMELFCRS 254



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M KQ     + G Y+ +I  + +  +++ A+ L   M +S   PD S ++ +I +   + 
Sbjct: 342 MMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSH 401

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           D    L  A   F  M   E CKPN V Y  L+   ++   VD+   +F+ + ES   P 
Sbjct: 402 D----LDAAYKIFGMMSERE-CKPNPVAYAALIDGLSKGGEVDKAVRVFELMVES-FRPG 455

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TYN V+D     G I+E   ++  M   +C PD  ++  LI    +    ++  ++F+
Sbjct: 456 VATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQ 515

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           ++        +  +N ++    K +    A  V  K+    Y
Sbjct: 516 AVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGY 557



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 8/182 (4%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   +S +I  + K      A  +F  M    C+P+P  Y ALI        K   + 
Sbjct: 384 VPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGL----SKGGEVD 439

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNG 126
           KA+  F+ M  +E  +P + TYN +L   C   R  + V  +   +H+    PD  +Y  
Sbjct: 440 KAVRVFELM--VESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECF-PDGASYGA 496

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++    +   ++E   +   +++     ++  +N+L++   K++       V   L+ + 
Sbjct: 497 LIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556

Query: 187 EK 188
            K
Sbjct: 557 YK 558


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 154/330 (46%), Gaps = 9/330 (2%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S L+  + K G+  +A  +   + N+G  P   +YN LI  +  T +    L  A   F 
Sbjct: 340 SILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGE----LEGAFSTFG 395

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +MK     KP+ +TYN L+    +A  +     L  E+ ++ + P + T+N ++DAYG+ 
Sbjct: 396 QMKS-RHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRT 454

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G +++   VLS M+ N  KP+++++  +++++ K     +   +   + H    P    +
Sbjct: 455 GQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVY 514

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDEL 252
           N++I  Y +     +A  + +KM +   +PS +TY  +I   G C+   +S A EI + L
Sbjct: 515 NAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIK--GLCNQSQISEAEEIINSL 572

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           S         + N ++ A C  G   +A  L +  H  G+     TY  L      A   
Sbjct: 573 SNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRL 632

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
             ++ L ++M QN +VP+       +E +S
Sbjct: 633 IEMEYLYQKMMQNNVVPSNAIHNIMVEAYS 662



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 148/329 (44%), Gaps = 7/329 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +IA M + G+   A+ +F EM      P+   YN +I  H+    K   L       
Sbjct: 199 YNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHI----KGGDLEAGFSLR 254

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M      KPN +TYN+LL    +A  + + +AL  E+    + PD +TY+ + D   +
Sbjct: 255 DQMV-CHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 313

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           NG  K M S+  +   N       T ++L++   K       E+V +SL+++   PT   
Sbjct: 314 NGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVI 373

Query: 194 FNSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           +N++I  Y +   L+G A   F +M +    P  ITY  +I      + ++ A+++  E+
Sbjct: 374 YNTLINGYCQTGELEG-AFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEM 432

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G +  V T N +++AY   G   +  ++       G+ P+  +Y  +  A+ K    
Sbjct: 433 QDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKI 492

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETF 341
                +L  M    ++PN + +   ++ +
Sbjct: 493 PEAVAILDDMFHKDVLPNAQVYNAIIDAY 521



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 144/312 (46%), Gaps = 5/312 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ LI    + G+   A   F +M++   +PD   YNALI        KA+ +  A   
Sbjct: 373 IYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLC----KAERITNAQDL 428

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +M+      P + T+N L+ A  +   +++   +  E+ E+ L P++ +Y  +++A+ 
Sbjct: 429 LMEMQD-NGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFC 487

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           KNG I E  ++L  M      P+   +N +ID+Y +    D+   + + +  +   P++ 
Sbjct: 488 KNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIV 547

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N +I          +AE +   ++  +  P  ++Y  +I+   Y  N+ +A ++   +
Sbjct: 548 TYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRM 607

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            K G    V T + ++      G   E + L++      V P ++ + ++ +AY+K   +
Sbjct: 608 HKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNE 667

Query: 313 ELVQKLLKRMEQ 324
              + L K M Q
Sbjct: 668 IKAEDLRKEMLQ 679



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 137/319 (42%), Gaps = 9/319 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L++ + + G+      L  EM +    PD   Y+ L    L     +KA+    G  
Sbjct: 269 YNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDG-LSRNGDSKAMLSLFGKS 327

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K            T +ILL    +   V     + + L  + L P    YN +++ Y +
Sbjct: 328 LK----NGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQ 383

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++   S   +MKS   KPD IT+N LI+   K +     + +   +  +   PT+ T
Sbjct: 384 TGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVET 443

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           FN++I  YG+     K   V  +M      P+ ++Y  I+  +     +  A  I D++ 
Sbjct: 444 FNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDM- 502

Query: 254 KLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
              KD+       NA+++AY  +G   +A +L E   + G++P   TY LL K     + 
Sbjct: 503 -FHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQ 561

Query: 312 KELVQKLLKRMEQNGIVPN 330
               ++++  +  + ++P+
Sbjct: 562 ISEAEEIINSLSNHRLIPD 580



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 132/323 (40%), Gaps = 11/323 (3%)

Query: 22  GKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER 81
           G+    R A   F  + ++G RPD   +N  + A +   D    L +A+G  ++M     
Sbjct: 139 GRHADVRRA---FGILASAGARPDTFAWNKAVQACVAAGD----LGEAVGMLRRMGRDGA 191

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
             PN  +YN+++    +A        +F E+ E  + P+  TYN ++D + K G ++   
Sbjct: 192 PPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGF 251

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           S+  +M  +  KP+ IT+N+L+    +     +   +   +   K  P   T++ +    
Sbjct: 252 SLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGL 311

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDM 259
            +         +F K  ++K   +   Y C I + G C +  VS A E+   L   G   
Sbjct: 312 SRNGDSKAMLSLFGK--SLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 369

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
                N ++  YC  G    A   F    +  + PD  TY  L     KA      Q LL
Sbjct: 370 TRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLL 429

Query: 320 KRMEQNGIVPNKRFFLEALETFS 342
             M+ NG+ P    F   ++ + 
Sbjct: 430 MEMQDNGVNPTVETFNTLIDAYG 452



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 9/176 (5%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKAL 70
           +Y+ +I    + G    A  L  +M+++G  P    YN LI    +     +A+ +  +L
Sbjct: 513 VYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSL 572

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
                     R  P+ V+YN L+ AC    N+D+   L + +H+  +   + TY+ ++  
Sbjct: 573 SN-------HRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISG 625

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
            G  G + EME +  +M  N   P     N+++++Y K     K E + K ++  +
Sbjct: 626 LGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKR 681


>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Brachypodium distachyon]
          Length = 821

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 154/359 (42%), Gaps = 32/359 (8%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH-- 58
           M+ Q  Y A   IY  +I +  +  Q   A  LF EM+   C+PD  +YN+LI AH    
Sbjct: 145 MKNQENYCARNDIYGMMIRLHARHSQIDQARGLFFEMQEWRCKPDADIYNSLIHAHARAG 204

Query: 59  -------------------TRDKAKALAKALGYFQKM-KGMERCK--------PNIVTYN 90
                              +R     +  A G      K +E CK        P++VT+N
Sbjct: 205 QWRWAINIMDDMLRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTRNGVGPDLVTHN 264

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM--K 148
           I+L A        +  A F+ +  + +APD +T N V+    K+G   E   +L+ M  K
Sbjct: 265 IVLSAFKNGSQYSKAIAYFEMMKGANIAPDTFTLNIVIHCLVKDGQYGEAIELLNSMREK 324

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
             QC PD++T+  ++ SY      +  + VF  ++    KP + ++N+++  Y    +  
Sbjct: 325 RTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMHA 384

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A  +F+ +      P  ++Y  ++  YG      +ARE F E+ K      + + NA++
Sbjct: 385 DALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALI 444

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +AY   G+  EA  L       G+ PD  +   L  A  +      +  +L+  +  GI
Sbjct: 445 DAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKIDTILEAAKSRGI 503



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 146/299 (48%), Gaps = 7/299 (2%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL-AKALGYFQKMKGMERCKPNIVTYNI 91
           +F  M   G +P+   YNAL+ A+      ++ + A ALG F+ +K     +P++V+Y  
Sbjct: 354 VFDMMVAEGVKPNIVSYNALLGAY-----ASRGMHADALGIFKLLK-QNGLRPDVVSYTT 407

Query: 92  LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151
           LL A  ++   ++    FKE+ ++   P+I +YN ++DAYG  GM KE  S+L  M+ + 
Sbjct: 408 LLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDG 467

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
             PD+++ + L+ + G+ +   K++ + ++      K  +  +NS I +Y      GKA 
Sbjct: 468 IPPDVVSISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKAL 527

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
            ++  M A    P  +TY  +I+        + + + F+++  L   +     ++++ +Y
Sbjct: 528 ELYAVMMASNVNPDAVTYNILISGLCKVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSY 587

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              G  TEA+  F +    G  PD  TY  + +AY           L K ME N + P+
Sbjct: 588 VKQGKLTEAESTFSSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPD 646



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 154/329 (46%), Gaps = 5/329 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+     +G    A+ +F  ++ +G RPD   Y  L+ A+     ++    KA   F
Sbjct: 370 YNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAY----GRSGQPEKAREAF 425

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M+    C+PNIV+YN L+ A   A    +  +L  E+ +  + PD+ + + ++ A G+
Sbjct: 426 KEMRK-NSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGR 484

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              I +++++L   KS   K +I+ +N  I SY     + K  +++  +M S   P   T
Sbjct: 485 CRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMASNVNPDAVT 544

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N +I    K     ++   F+ M  ++   +   Y  +I  Y     ++ A   F  + 
Sbjct: 545 YNILISGLCKVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMK 604

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G    V T  AM+EAY  +G    A  LF+      V PD+     L +A  + +  E
Sbjct: 605 ESGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAIICSSLMEALNRGSQHE 664

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            V +L++ M++  I  N++ + E + + S
Sbjct: 665 RVLQLMELMKEKCIPLNQKAYFEIIASCS 693



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 145/325 (44%), Gaps = 12/325 (3%)

Query: 25  GQTRLAMWLFSEMRNS---GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER 81
           G  + A+ +F  M+N      R D  +Y  +I   LH R     + +A G F +M+   R
Sbjct: 133 GSLQHAVHVFRWMKNQENYCARND--IYGMMI--RLHARHSQ--IDQARGLFFEMQEW-R 185

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           CKP+   YN L+ A A+A        +  ++  + + P   TYN V++A G  G  K+  
Sbjct: 186 CKPDADIYNSLIHAHARAGQWRWAINIMDDMLRAAIPPSRTTYNNVINACGAAGNWKKAL 245

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
            +  +M  N   PD++T N+++ ++     + K    F+ +  +   P   T N +I   
Sbjct: 246 ELCKKMTRNGVGPDLVTHNIVLSAFKNGSQYSKAIAYFEMMKGANIAPDTFTLNIVIHCL 305

Query: 202 GKARLQGKAEYVFQKMTAMKYT--PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
            K    G+A  +   M   +    P  +TY  I+  Y  C  V   + +FD +   G   
Sbjct: 306 VKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKP 365

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            + + NA+L AY   G+  +A  +F+     G+ PD  +Y  L  AY ++   E  ++  
Sbjct: 366 NIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAF 425

Query: 320 KRMEQNGIVPNKRFFLEALETFSSS 344
           K M +N   PN   +   ++ + S+
Sbjct: 426 KEMRKNSCRPNIVSYNALIDAYGSA 450



 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 86/192 (44%), Gaps = 7/192 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ +I      G  R A  LF EM  +  +PD  + ++L+ A     ++     
Sbjct: 609 LPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAIICSSLMEA----LNRGSQHE 664

Query: 68  KALGYFQKMKGMERCKP-NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           + L   + MK  E+C P N   Y  ++ +C+  R+    + + + L  S+ +  + T N 
Sbjct: 665 RVLQLMELMK--EKCIPLNQKAYFEIIASCSMLRDWKTASEIIEHLDSSLSSISVGTLNH 722

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++   GK G  + M  +  +M S+     + T+ +L+ +      + K  +V + +  + 
Sbjct: 723 LLTFLGKCGKTECMMKLFYKMMSSCSTVGVSTYTVLLRNLLAVGKWRKYIEVLQWMEDAG 782

Query: 187 EKPTLPTFNSMI 198
             PTL  + +++
Sbjct: 783 VSPTLYMYQNVL 794


>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 592

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 153/327 (46%), Gaps = 13/327 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLHTRDKAKALA 67
           +T IYS +I    K G    A  L +EM+     PD   Y+ LI A   L   +  + L 
Sbjct: 212 NTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTL- 270

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
                F +M  +    PN+ T+N ++    +   V+    + + + E  + PD+ TYN +
Sbjct: 271 -----FLEMIHLN-IYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMI 324

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D YG  G +     +   M +   +P+II++N+LI+ Y +++  D+  QV + +     
Sbjct: 325 IDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGL 384

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRA 245
           KP++ T N ++    +      A+  F +M +  + P   T+ C + + GY  N  V  A
Sbjct: 385 KPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTH-CTL-LGGYFKNGLVEEA 442

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
              F +L +  +D  +    A+++  C NG   +A   FE    +G+ PD  TY  +   
Sbjct: 443 MSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISG 502

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKR 332
           Y +  + +  + +L++ME NG + + R
Sbjct: 503 YCQEGLLDEAKDMLRKMEDNGCLADNR 529



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 150/368 (40%), Gaps = 75/368 (20%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y  ++  + KKG T+ A  L   M     +P+  +Y+ +I A      K   L  A   
Sbjct: 180 MYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFC----KDGMLDGATSL 235

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +MK  +   P+I TY+ L+ A  +    + V  LF E+    + P++ T+N V+D   
Sbjct: 236 LNEMK-QKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLC 294

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G +++ E ++  M      PD+IT+N++ID YG R   D+  ++F S+++   +P + 
Sbjct: 295 KEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNII 354

Query: 193 TFNSMIINYGKAR---------------------------LQG--------KAEYVFQKM 217
           ++N +I  Y + +                           L G         A+  F +M
Sbjct: 355 SYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEM 414

Query: 218 TAMKYTPSFITYECIITMY---------------------------------GYCDN--V 242
            +  + P   T+  ++  Y                                 G C N  +
Sbjct: 415 LSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKL 474

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A   F++L  +G    V T  AM+  YC  GL  EA  +     + G   D+ TY ++
Sbjct: 475 DKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVI 534

Query: 303 YKAYTKAN 310
            + + ++N
Sbjct: 535 VRGFLRSN 542



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 124/283 (43%), Gaps = 4/283 (1%)

Query: 48  VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNA 107
           ++N L+   L   +K K    A+  F+K+     C+PN V Y  ++    +  +  +   
Sbjct: 144 IFNTLLRG-LFAENKVK---DAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFD 199

Query: 108 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
           L + + +    P+   Y+ V+DA+ K+GM+    S+L+ MK     PDI T++ LID+  
Sbjct: 200 LLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALC 259

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
           K   ++ +  +F  ++H    P + TFNS+I    K      AE + + M      P  I
Sbjct: 260 KLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVI 319

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           TY  II  YG    V RAREIFD +     +  + + N ++  Y       EA  +    
Sbjct: 320 TYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREI 379

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              G+ P   T  +L     +    +  Q     M   G +P+
Sbjct: 380 SQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPD 422



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/308 (18%), Positives = 117/308 (37%), Gaps = 41/308 (13%)

Query: 61  DKAKALAKALGYFQKMKGMERCKP--NIVTYNILLRACAQARNVDQVNALFKELHE---- 114
           +  K L  A   F++M    R KP  ++V+++ LL+A    ++   V +LF+E+H+    
Sbjct: 48  ENVKCLDDAFSLFRQMV---RTKPLPSVVSFSKLLKALVHMKHYSSVVSLFREIHKLRIP 104

Query: 115 -----------------------SILAPDI--------YTYNGVMDAYGKNGMIKEMESV 143
                                  S+LA             +N ++        +K+   +
Sbjct: 105 VHEFILSIVVNSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHL 164

Query: 144 LSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
             ++ + N C+P+ + +  +++   K+    K   + + +     KP    ++ +I  + 
Sbjct: 165 FKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFC 224

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           K  +   A  +  +M      P   TY  +I            R +F E+  L     V 
Sbjct: 225 KDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVC 284

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T N++++  C  G   +A+ +       GV PD  TY ++   Y      +  +++   M
Sbjct: 285 TFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSM 344

Query: 323 EQNGIVPN 330
               I PN
Sbjct: 345 INKSIEPN 352



 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 68/158 (43%), Gaps = 5/158 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           +I D   +  L+    K G    AM  F ++       +  +Y A+I        K   L
Sbjct: 419 HIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLC----KNGKL 474

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            KA   F+K+  +    P+++TY  ++    Q   +D+   + +++ ++    D  TYN 
Sbjct: 475 DKAHATFEKLP-LIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNV 533

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164
           ++  + ++  + EM++ L  +       +  T  LL+D
Sbjct: 534 IVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMD 571


>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
 gi|224029903|gb|ACN34027.1| unknown [Zea mays]
 gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
          Length = 819

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 154/333 (46%), Gaps = 12/333 (3%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNS---GCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           LI  +   G  + A+ +F  M+N      R D  +Y  +I   LH R     + +A G F
Sbjct: 123 LIREIAISGSLKHAVHVFRWMKNQENYCARND--IYGMMI--RLHARHNK--VDQARGLF 176

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+   RCKPN  TYN L+ A A+A        +  ++  + + P   TYN V++A G 
Sbjct: 177 FEMQEW-RCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRTTYNNVINACGA 235

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G  K+   +  +M  N   PD+IT N+++ ++     + K    F+ +  SK  P   T
Sbjct: 236 AGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCT 295

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYT--PSFITYECIITMYGYCDNVSRAREIFDE 251
            N +I    K  L G+A  +F  M   + T  P  +TY  I+  Y  C      + +FD 
Sbjct: 296 MNIVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDI 355

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G    + + NA+L AY  +G+ TEA   F+     G+ PD  +Y  L  AY ++  
Sbjct: 356 MVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQ 415

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            E  +++   M +N   PNK  +   ++ + S+
Sbjct: 416 PEKAREVFNEMRKNACKPNKVSYNALIDAYGSA 448



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 149/334 (44%), Gaps = 11/334 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+ Q  Y A   IY  +I +  +  +   A  LF EM+   C+P+   YN+LI AH    
Sbjct: 143 MKNQENYCARNDIYGMMIRLHARHNKVDQARGLFFEMQEWRCKPNTDTYNSLIHAHARAG 202

Query: 61  DKAKALAKALGYFQKMKGMERCK--PNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
               A+         M  M+R    P+  TYN ++ AC  A N  +   L K++ E+ + 
Sbjct: 203 QWCWAI-------NIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTENGVG 255

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD+ T+N V+ A+       +  +    MKS++  PD  T N++I    K   + +  ++
Sbjct: 256 PDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKIGLYGEAIEL 315

Query: 179 FKSLMHSKE--KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           F S+   +    P + T+ S++ +Y         + VF  M A    P+ ++Y  ++  Y
Sbjct: 316 FNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVAEGVRPNIVSYNALLGAY 375

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                 + A E F  L + G    + +  ++L AY  +  P +A  +F         P+ 
Sbjct: 376 ASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRKNACKPNK 435

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +Y  L  AY  A M +    LL  MEQ+GI P+
Sbjct: 436 VSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPD 469



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 128/281 (45%), Gaps = 15/281 (5%)

Query: 34  FSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER---CKPNIVTYN 90
           F  M++S   PD    N +I    H   K     +A+  F  M+  ER   C P++VTY 
Sbjct: 281 FEIMKSSKVAPDTCTMNIVI----HCLVKIGLYGEAIELFNSMR--ERRTTCHPDVVTYT 334

Query: 91  ILL---RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
            ++     C QA N     A+F  +    + P+I +YN ++ AY  +GM  E       +
Sbjct: 335 SIMYSYSVCGQAEN---CKAVFDIMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLL 391

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           K N  +PDI+++  L+++YG+    +K  +VF  +  +  KP   ++N++I  YG A + 
Sbjct: 392 KQNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGML 451

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            +A  +  +M      P  I+   ++T  G C  +++   I       G  +     N+ 
Sbjct: 452 KEAISLLHEMEQDGIQPDVISISTLLTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSG 511

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           + +Y   G   +A +L+ +     V PD+ TY +L     K
Sbjct: 512 IGSYLSLGDYKKALVLYTSMRAGNVKPDAVTYNILISGSCK 552



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 153/360 (42%), Gaps = 46/360 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRN--SGCRPDPSVYNALITAH--LHTRDKAKA 65
           DT   + +I  + K G    A+ LF+ MR   + C PD   Y +++ ++      +  KA
Sbjct: 292 DTCTMNIVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKA 351

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           +      F  M   E  +PNIV+YN LL A A      +    FK L ++ L PDI +Y 
Sbjct: 352 V------FDIMVA-EGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYT 404

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++AYG++   ++   V + M+ N CKP+ +++N LID+YG      +   +   +   
Sbjct: 405 SLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQD 464

Query: 186 KEKPTLPTFNSMIINYGK-------------ARLQG----------------------KA 210
             +P + + ++++   G+             A+ +G                      KA
Sbjct: 465 GIQPDVISISTLLTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKA 524

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
             ++  M A    P  +TY  +I+          + + F+++  L   +     ++++ +
Sbjct: 525 LVLYTSMRAGNVKPDAVTYNILISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSSVICS 584

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y   G  TEA   F +    G  PD  TY  L KAY+          L K ME NG  P+
Sbjct: 585 YVKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNGTQPD 644



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 150/329 (45%), Gaps = 9/329 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+      G    A+  F  ++ +G RPD   Y +L+ A+     ++    KA   F
Sbjct: 368 YNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAY----GRSAQPEKAREVF 423

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+    CKPN V+YN L+ A   A  + +  +L  E+ +  + PD+ + + ++ A G+
Sbjct: 424 NEMRK-NACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGR 482

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              + +++ +L+  KS   + + + +N  I SY     + K   ++ S+     KP   T
Sbjct: 483 CKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKPDAVT 542

Query: 194 FNSMIINYGKARLQGKAEYV--FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
           +N +I   G  +L    E +  F+ M  +    +   Y  +I  Y     ++ A   F+ 
Sbjct: 543 YNILI--SGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSSVICSYVKQGKLTEAASTFNS 600

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G    V T   +++AY  +G    A  LF+   N G  PD+     L +A  K   
Sbjct: 601 MKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNGTQPDAIVCSSLMEALNKGGQ 660

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALET 340
            E V +L++ M+Q  I  N++ + E + +
Sbjct: 661 PERVLQLIEFMKQKKIQLNQKAYFEIISS 689



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 126/276 (45%), Gaps = 5/276 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+   G+  Q   A  +F+EMR + C+P+   YNALI A+      A  L +A
Sbjct: 399 DIVSYTSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAY----GSAGMLKEA 454

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +    +M+  +  +P++++ + LL AC + + + +++ +        +  +   YN  + 
Sbjct: 455 ISLLHEME-QDGIQPDVISISTLLTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIG 513

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           +Y   G  K+   + + M++   KPD +T+N+LI    K   + +  + F+ ++      
Sbjct: 514 SYLSLGDYKKALVLYTSMRAGNVKPDAVTYNILISGSCKLGRYVESLKFFEDMLDLNIHL 573

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           T   ++S+I +Y K     +A   F  M      P  +TY  +I  Y    +  RA ++F
Sbjct: 574 TKEVYSSVICSYVKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLF 633

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
            E+   G        ++++EA    G P     L E
Sbjct: 634 KEMENNGTQPDAIVCSSLMEALNKGGQPERVLQLIE 669



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/276 (19%), Positives = 115/276 (41%), Gaps = 5/276 (1%)

Query: 25  GQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP 84
           G  + A+ L++ MR    +PD   YN LI+       K     ++L +F+ M  +     
Sbjct: 519 GDYKKALVLYTSMRAGNVKPDAVTYNILISGSC----KLGRYVESLKFFEDMLDLNIHLT 574

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
             V  +++     Q + + +  + F  + E+   PD+ TY  ++ AY  +G  +    + 
Sbjct: 575 KEVYSSVICSYVKQGK-LTEAASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLF 633

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             M++N  +PD I  + L+++  K    +++ Q+ + +   K +     +  +I +    
Sbjct: 634 KEMENNGTQPDAIVCSSLMEALNKGGQPERVLQLIEFMKQKKIQLNQKAYFEIISSCTML 693

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
           R    A  + + + +   + SF T   I+   G C       ++F ++      + +ST 
Sbjct: 694 RDWKTASQIIEHLDSSLSSISFGTLNHILNFLGKCGRTESMMKLFYKMVTSCSTVGLSTY 753

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
             +L    + G   +   + +   + GV P    Y+
Sbjct: 754 TILLRNLLIVGKWRKYVEVLQWMEDAGVCPTLYMYQ 789


>gi|326487476|dbj|BAJ89722.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 805

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 146/316 (46%), Gaps = 5/316 (1%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S +IA  G+ G    A+  F +++  G  P    YNAL    L    KA    +AL   +
Sbjct: 258 STVIAAAGRDGLVDEAVAFFEDLKARGHAPCVVTYNAL----LQVFGKAGNYTEALRVLR 313

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M+    CKP+ VTYN L  + A+A    +       +    L P+ +TYN +M AYG  
Sbjct: 314 EMEDAG-CKPDAVTYNELAGSYARAGFYQEAAKCIDTMIGKGLLPNTFTYNTIMTAYGNA 372

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G + E  ++  RMK N   P   T+NL++   GK+  F  M ++   +  S   P   T+
Sbjct: 373 GKVDEALALFDRMKKNGFIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTW 432

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N+++   GK  ++     V + M + K      TY  +I  YG C + + A +++DE++ 
Sbjct: 433 NTLLAVCGKRGMESYVTRVLEGMKSCKVELCRDTYNTLICAYGRCGSRANAFKMYDEMTA 492

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
            G    ++T NA+L      G  T A  +     + G  P+  +Y LL + + K      
Sbjct: 493 AGFAPCLTTYNALLNVLSRQGDWTAARSIVSKMKSEGFKPNDMSYSLLLQCHAKGGNAAG 552

Query: 315 VQKLLKRMEQNGIVPN 330
           ++ + K + Q  I P+
Sbjct: 553 IEAIEKEVYQGNIFPS 568



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 162/341 (47%), Gaps = 24/341 (7%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +I  T  Y+ ++ ++GKK +    + +  EM  SGC P+   +N L+ A    R  
Sbjct: 386 KKNGFIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLL-AVCGKRGM 444

Query: 63  AKALAKALGYFQKMKGMERCKPNIV--TYNILLRACAQARNVDQVNA--LFKELHESILA 118
              + + L      +GM+ CK  +   TYN L+  CA  R   + NA  ++ E+  +  A
Sbjct: 445 ESYVTRVL------EGMKSCKVELCRDTYNTLI--CAYGRCGSRANAFKMYDEMTAAGFA 496

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           P + TYN +++   + G      S++S+MKS   KP+ ++++LL+  + K      +E +
Sbjct: 497 PCLTTYNALLNVLSRQGDWTAARSIVSKMKSEGFKPNDMSYSLLLQCHAKGGNAAGIEAI 556

Query: 179 FKSLMHSKEKPTLPTFNSMII-NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
            K +      P+     +++I N+   RL+G  E  FQ++ A  + P  +    ++++Y 
Sbjct: 557 EKEVYQGNIFPSWVILRTLVIANFKCRRLEG-IERAFQEVKARGHKPDLVILNSMLSIYA 615

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN---------SH 288
                S+A E+F+ + +LG    + T N++++ Y  +  P EA+ +              
Sbjct: 616 KNGLYSKAMEMFESIEQLGLSPDLITYNSLMDMYAKSNEPWEAEKILNRLRSSQSQQQQQ 675

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
              + PD  +Y  +   + K  + +  Q++L  M  +G+ P
Sbjct: 676 QQQLKPDVVSYNTVINGFCKEGLIKEAQRVLSEMIADGVAP 716



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 148/334 (44%), Gaps = 17/334 (5%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT--- 59
           K R +      Y+ L+ V GK G    A+ +  EM ++GC+PD   YN L  ++      
Sbjct: 281 KARGHAPCVVTYNALLQVFGKAGNYTEALRVLREMEDAGCKPDAVTYNELAGSYARAGFY 340

Query: 60  RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
           ++ AK +   +G     KG+    PN  TYN ++ A   A  VD+  ALF  + ++   P
Sbjct: 341 QEAAKCIDTMIG-----KGL---LPNTFTYNTIMTAYGNAGKVDEALALFDRMKKNGFIP 392

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
              TYN V+   GK      M  +L  M  + C P+ +T+N L+   GKR     + +V 
Sbjct: 393 YTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLLAVCGKRGMESYVTRVL 452

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           + +   K +    T+N++I  YG+   +  A  ++ +MTA  + P   TY  ++ +    
Sbjct: 453 EGMKSCKVELCRDTYNTLICAYGRCGSRANAFKMYDEMTAAGFAPCLTTYNALLNVLSRQ 512

Query: 240 DNVSRAREIFDELSKLG---KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
            + + AR I  ++   G    DM  S L   L+ +   G     + + +  +   + P  
Sbjct: 513 GDWTAARSIVSKMKSEGFKPNDMSYSLL---LQCHAKGGNAAGIEAIEKEVYQGNIFPSW 569

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              + L  A  K    E +++  + ++  G  P+
Sbjct: 570 VILRTLVIANFKCRRLEGIERAFQEVKARGHKPD 603



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 139/322 (43%), Gaps = 8/322 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++  + ++G+   A+ LF E+R  G  P    YN ++  +       ++  + 
Sbjct: 182 DVRAYTTVLHALSREGRYERALRLFDELRREGVAPTRVTYNVVLDVYGRM---GRSWPRV 238

Query: 70  LGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +     M+  G+E   P+  T + ++ A  +   VD+  A F++L     AP + TYN +
Sbjct: 239 VALLADMRAAGVE---PDGFTASTVIAAAGRDGLVDEAVAFFEDLKARGHAPCVVTYNAL 295

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  +GK G   E   VL  M+   CKPD +T+N L  SY +   + +  +   +++    
Sbjct: 296 LQVFGKAGNYTEALRVLREMEDAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTMIGKGL 355

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P   T+N+++  YG A    +A  +F +M    + P   TY  ++ M G     +   E
Sbjct: 356 LPNTFTYNTIMTAYGNAGKVDEALALFDRMKKNGFIPYTNTYNLVLGMLGKKSRFAAMLE 415

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +  E+S+ G      T N +L      G+ +    + E   +  V     TY  L  AY 
Sbjct: 416 MLGEMSRSGCTPNRVTWNTLLAVCGKRGMESYVTRVLEGMKSCKVELCRDTYNTLICAYG 475

Query: 308 KANMKELVQKLLKRMEQNGIVP 329
           +   +    K+   M   G  P
Sbjct: 476 RCGSRANAFKMYDEMTAAGFAP 497



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 148/351 (42%), Gaps = 12/351 (3%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           L+  +   G    A+ L    R  G    P+ +  ++ A L    +  A+   L      
Sbjct: 118 LLKALELSGHWEWALALLRWARAEGAADGPAPFEMVVRA-LGREGRHDAVCALLDEMPLP 176

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
            G    + ++  Y  +L A ++    ++   LF EL    +AP   TYN V+D YG+ G 
Sbjct: 177 PG---ARLDVRAYTTVLHALSREGRYERALRLFDELRREGVAPTRVTYNVVLDVYGRMGR 233

Query: 137 -IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195
               + ++L+ M++   +PD  T + +I + G+    D+    F+ L      P + T+N
Sbjct: 234 SWPRVVALLADMRAAGVEPDGFTASTVIAAAGRDGLVDEAVAFFEDLKARGHAPCVVTYN 293

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
           +++  +GKA    +A  V ++M      P  +TY  +   Y        A +  D +   
Sbjct: 294 ALLQVFGKAGNYTEALRVLREMEDAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTMIGK 353

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
           G      T N ++ AY   G   EA  LF+     G  P ++TY L+     K +    +
Sbjct: 354 GLLPNTFTYNTIMTAYGNAGKVDEALALFDRMKKNGFIPYTNTYNLVLGMLGKKSRFAAM 413

Query: 316 QKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRSLSTAKS 366
            ++L  M ++G  PN+        T+++ LA       ++ +TR L   KS
Sbjct: 414 LEMLGEMSRSGCTPNR-------VTWNTLLAVCGKRGMESYVTRVLEGMKS 457



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 123/275 (44%), Gaps = 39/275 (14%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA---------- 63
           Y+ L+ V+ ++G    A  + S+M++ G +P+   Y+ L+  H    + A          
Sbjct: 502 YNALLNVLSRQGDWTAARSIVSKMKSEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVY 561

Query: 64  -----------KALAKALGYFQKMKGMERC---------KPNIVTYNILLRACAQARNVD 103
                      + L  A    ++++G+ER          KP++V  N +L   A+     
Sbjct: 562 QGNIFPSWVILRTLVIANFKCRRLEGIERAFQEVKARGHKPDLVILNSMLSIYAKNGLYS 621

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ---------CKP 154
           +   +F+ + +  L+PD+ TYN +MD Y K+    E E +L+R++S+Q          KP
Sbjct: 622 KAMEMFESIEQLGLSPDLITYNSLMDMYAKSNEPWEAEKILNRLRSSQSQQQQQQQQLKP 681

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           D++++N +I+ + K     + ++V   ++     P + T+++++  Y    +  +A  V 
Sbjct: 682 DVVSYNTVINGFCKEGLIKEAQRVLSEMIADGVAPCVITYHTLVGGYASREMFAEAREVV 741

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
             M   K  P  +TY  ++  Y        AR+  
Sbjct: 742 GYMIQRKLKPMELTYRRVVDSYCRAKRYEDARDFL 776



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 90/208 (43%), Gaps = 41/208 (19%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K R +  D  I + ++++  K G    AM +F  +   G  PD   YN+L+  +  + + 
Sbjct: 596 KARGHKPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPDLITYNSLMDMYAKSNEP 655

Query: 63  AKALAKALGYFQKMKGMER-----CKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
            +A  K L   +  +  ++      KP++V+YN +            +N   KE      
Sbjct: 656 WEA-EKILNRLRSSQSQQQQQQQQLKPDVVSYNTV------------INGFCKE------ 696

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
                            G+IKE + VLS M ++   P +IT++ L+  Y  R+ F +  +
Sbjct: 697 -----------------GLIKEAQRVLSEMIADGVAPCVITYHTLVGGYASREMFAEARE 739

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKAR 205
           V   ++  K KP   T+  ++ +Y +A+
Sbjct: 740 VVGYMIQRKLKPMELTYRRVVDSYCRAK 767


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 155/357 (43%), Gaps = 30/357 (8%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA-- 65
           + DT +Y+ LI    K+G  R A   F EM +    PD   Y A+I+      D  +A  
Sbjct: 348 LPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGK 407

Query: 66  -----LAKAL------------GYFQ--KMKGMER---------CKPNIVTYNILLRACA 97
                  K L            GY +   MK   R         C PN+VTY  L+    
Sbjct: 408 LFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC 467

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           +  ++D  N L  E+ +  L P+I+TYN +++   K+G I+E   ++   ++     D +
Sbjct: 468 KEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTV 527

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           T+  L+D+Y K    DK +++ K ++    +PT+ TFN ++  +    +    E +   M
Sbjct: 528 TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 587

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
            A    P+  T+  ++  Y   +N+  A  I+ ++   G      T   +++ +C     
Sbjct: 588 LAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNM 647

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            EA  LF+     G +   STY +L K + K       +++  +M + G+  +K  F
Sbjct: 648 KEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF 704



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 144/320 (45%), Gaps = 5/320 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY  +I ++ +  +   A   FSEM   G  PD  VY  LI      R   +A +K   +
Sbjct: 318 IYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCK-RGDIRAASK---F 373

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F +M   +   P+++TY  ++    Q  ++ +   LF E+    L PD  T+  +++ Y 
Sbjct: 374 FYEMHSRD-ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYC 432

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G +K+   V + M    C P+++T+  LID   K    D   ++   +     +P + 
Sbjct: 433 KAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIF 492

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+NS++    K+    +A  +  +  A       +TY  ++  Y     + +A+EI  E+
Sbjct: 493 TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEM 552

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G    + T N ++  +C++G+  + + L       G+ P+++T+  L K Y   N  
Sbjct: 553 LGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNL 612

Query: 313 ELVQKLLKRMEQNGIVPNKR 332
           +    + K M   G+ P+ +
Sbjct: 613 KAATAIYKDMCSRGVGPDGK 632



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 134/342 (39%), Gaps = 46/342 (13%)

Query: 26  QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85
           +T  A+ +F E    G   + + YN +I  H   +      A  L    ++KG     P+
Sbjct: 226 KTATAIIVFREFPEVGVCWNVASYNIVI--HFVCQLGRIKEAHHLLLLMELKGY---TPD 280

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           +++Y+ ++    +   +D+V  L + +    L P+ Y Y  ++    +   + E E   S
Sbjct: 281 VISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFS 340

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE------------------ 187
            M      PD + +  LID + KR       + F   MHS++                  
Sbjct: 341 EMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYE-MHSRDITPDVLTYTAIISGFCQI 399

Query: 188 ------------------KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
                             +P   TF  +I  Y KA     A  V   M     +P+ +TY
Sbjct: 400 GDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTY 459

Query: 230 ECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
             +I   G C   ++  A E+  E+ K+G    + T N+++   C +G   EA  L    
Sbjct: 460 TTLID--GLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 517

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
              G+  D+ TY  L  AY K+   +  Q++LK M   G+ P
Sbjct: 518 EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQP 559



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 135/322 (41%), Gaps = 4/322 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           +D  ++     V+   G  R A  +F +M N G        N  +T    ++D  K  A 
Sbjct: 173 SDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRL--SKDCYKT-AT 229

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A+  F++   +  C  N+ +YNI++    Q   + + + L   +      PD+ +Y+ V+
Sbjct: 230 AIIVFREFPEVGVCW-NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVV 288

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + Y + G + ++  ++  MK    KP+   +  +I    +     + E+ F  ++     
Sbjct: 289 NGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGIL 348

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P    + ++I  + K      A   F +M +   TP  +TY  II+ +    ++  A ++
Sbjct: 349 PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKL 408

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F E+   G +    T   ++  YC  G   +A  +  +    G +P+  TY  L     K
Sbjct: 409 FHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCK 468

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
               +   +LL  M + G+ PN
Sbjct: 469 EGDLDSANELLHEMWKIGLQPN 490



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 12/178 (6%)

Query: 162 LIDSYGKRQAF---DKMEQVFKSLMHS-----KEKPTLPTFNSMIINYGKARLQGKAEYV 213
           LI S+ +R      D   Q F  L+++      +      F  +++++G  R   +A  V
Sbjct: 141 LISSFWERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLR---EARRV 197

Query: 214 FQKMTAMKYTPSFITYECIIT-MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           F+KM       S  +    +T +   C   + A  +F E  ++G    V++ N ++   C
Sbjct: 198 FEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVC 257

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             G   EA  L       G TPD  +Y  +   Y +    + V KL++ M++ G+ PN
Sbjct: 258 QLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPN 315


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 156/339 (46%), Gaps = 22/339 (6%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  +I  + K G       LF EM+  G  PD   Y+++I    HT         A G F
Sbjct: 241 YCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHT----GRWEGAKGLF 296

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   E   PN+VT+N+L+ A  +A  +++ N L K + +   +PD +TYN ++D +  
Sbjct: 297 NEMVD-EGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCL 355

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G I +   +   M+S   + D +++N+LI+ Y K     + +++++ +M  +  PT+ T
Sbjct: 356 EGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVIT 415

Query: 194 FNSMIINY---GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREI 248
           +N+++      GK R    A  +F +M     TP   TY   I + G C N  +S A E+
Sbjct: 416 YNTLLTGLFREGKVR---DAWNLFGEMKVHDLTPESCTYN--ILLDGLCKNNHLSEAMEL 470

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F  L        +   N +++  C       A  LF    + G+ P+  TY ++     K
Sbjct: 471 FHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCK 530

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
           +   E  + L   ME+ G  PN       L TF++ + G
Sbjct: 531 SGQLENAKDLFLGMEEKGCAPN-------LVTFNTLMRG 562



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 140/299 (46%), Gaps = 13/299 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKALAKALG 71
           ++ LI  + K G+   A  L   M   G  PD   YN LI    L  R D A+ L  ++ 
Sbjct: 311 FNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSM- 369

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
              + KG+E    + V+YN+L+    ++  + +   L++E+    + P + TYN ++   
Sbjct: 370 ---ESKGIET---DAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGL 423

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G +++  ++   MK +   P+  T+N+L+D   K     +  ++F  L +   +P++
Sbjct: 424 FREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSI 483

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIF 249
             FN +I    KAR    A  +F +++     P+ ITY  +I  +G C +  +  A+++F
Sbjct: 484 QIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMI--HGLCKSGQLENAKDLF 541

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             + + G    + T N ++  +C N    +   L +       +PD+ST  ++    +K
Sbjct: 542 LGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSK 600



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 130/314 (41%), Gaps = 25/314 (7%)

Query: 29  LAMWLFSEMRNSGCRPDPSVYNALITA-HLHTRDKAKALAKALGYFQKMKGMERCKPNIV 87
             + +  EM   G  P+   + +L+    L +R     +++A G  +KM  M   +PN+V
Sbjct: 145 FGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSR-----ISEATGLLRKMVRMGY-RPNVV 198

Query: 88  TYNILLRACAQARNVDQVNALFKELHESIL----------APDIYTYNGVMDAYGKNGMI 137
           TY  LL       N      L  +LHE +L           P++  Y  ++D+  K+G+I
Sbjct: 199 TYGTLLNGLCMTGNT----MLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLI 254

Query: 138 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 197
            + + +   MK     PD++ ++ +I        ++  + +F  ++     P + TFN +
Sbjct: 255 DKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVL 314

Query: 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKL 255
           I    KA    +A ++ + M     +P   TY  +I   G+C    +  AR++F  +   
Sbjct: 315 IDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLID--GFCLEGRIDDARDLFVSMESK 372

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
           G +    + N ++  YC +G   EA  L+       + P   TY  L     +       
Sbjct: 373 GIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDA 432

Query: 316 QKLLKRMEQNGIVP 329
             L   M+ + + P
Sbjct: 433 WNLFGEMKVHDLTP 446



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 111/276 (40%), Gaps = 19/276 (6%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           ++A   F  +  M+   P I ++N LL A A+ +    V +L+K +    LAPD  T N 
Sbjct: 74  SEAFSVFNHLIDMQPTPP-ISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNI 132

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++ Y     +    +VL  M      P+ +TF  L+          +   + + ++   
Sbjct: 133 LINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMG 192

Query: 187 EKPTLPTFNSMI------------INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
            +P + T+ +++            +   +  L G   +       +   P+ + Y  II 
Sbjct: 193 YRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGF------GVTIKPNLVCYCTIID 246

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
                  + + +E+F E+   G    V   ++++   C  G    A  LF    + GV P
Sbjct: 247 SLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHP 306

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +  T+ +L  A  KA   E    LLK M Q G  P+
Sbjct: 307 NVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPD 342



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 84/181 (46%), Gaps = 17/181 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + K      AM LF  + N   +P   ++N LI        KA+ +  A   F
Sbjct: 451 YNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLC----KARKIEIARELF 506

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++   E  +PN++TY +++    ++  ++    LF  + E   AP++ T+N +M  + +
Sbjct: 507 NRLS-HEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQ 565

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           N  ++++  +L  M      PD  T ++++D   K       ++ ++  +H      LPT
Sbjct: 566 NDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSK-------DEKYREYLH-----LLPT 613

Query: 194 F 194
           F
Sbjct: 614 F 614


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 151/323 (46%), Gaps = 12/323 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +  +I  + K G+ + A  +  +M+  G  P    YN +I  +     KA  + KA    
Sbjct: 232 FDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYC----KAGKMFKADALL 287

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M   +R  PN +T+NIL+    +  NV     +F+E+    L P++ TYN +++    
Sbjct: 288 KEMVA-KRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCS 346

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           NG + E   +  +M     KP+++T+N LI+ + K++   +  ++   +      P + T
Sbjct: 347 NGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVIT 406

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDE 251
           FN++I  YGKA     A  +   M      P+  TY C+I   G+C   NV  AR++  E
Sbjct: 407 FNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIV--GFCREGNVKEARKLAKE 464

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKAYTK 308
           +   G    + T N +++A C  G   +A  L +    M   G   +  TY +L K +  
Sbjct: 465 MEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCN 524

Query: 309 ANMKELVQKLLKRMEQNGIVPNK 331
               E   +LL  M + G++PN+
Sbjct: 525 KGKLEEANRLLNEMLEKGLIPNR 547



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 157/325 (48%), Gaps = 11/325 (3%)

Query: 6   WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA 65
           W  A++ I   L+    K G+  LA+  F    + G R      N ++ + +    K   
Sbjct: 154 WGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLV----KEGR 209

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           +      +++M    R   N+VT+++++    +     +   + +++     +P + TYN
Sbjct: 210 IGVVESVYKEMI-RRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYN 268

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++D Y K G + + +++L  M + +  P+ ITFN+LID + + +     ++VF+ +   
Sbjct: 269 TIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQ 328

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VS 243
             +P + T+NS+I          +A  +  KM+ M   P+ +TY  +I   G+C    + 
Sbjct: 329 GLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALIN--GFCKKKMLK 386

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            ARE+ D++ K G    V T N +++AY   G   +A LL     + GV P+ STY  L 
Sbjct: 387 EAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLI 446

Query: 304 KAYTK-ANMKELVQKLLKRMEQNGI 327
             + +  N+KE  +KL K ME NG+
Sbjct: 447 VGFCREGNVKE-ARKLAKEMEGNGL 470



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 110/214 (51%), Gaps = 4/214 (1%)

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G I  +ESV   M   +   +++TF+++I+   K   F K   V + +      P++ 
Sbjct: 206 KEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVI 265

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFD 250
           T+N++I  Y KA    KA+ + ++M A +  P+ IT+  +I   G+C  +NV+ A+++F+
Sbjct: 266 TYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILID--GFCRDENVTAAKKVFE 323

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+ + G    V T N+++   C NG   EA  L +    MG+ P+  TY  L   + K  
Sbjct: 324 EMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKK 383

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           M +  +++L  + + G+ PN   F   ++ +  +
Sbjct: 384 MLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKA 417



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 117/246 (47%), Gaps = 4/246 (1%)

Query: 87  VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 146
           ++ N +L +  +   +  V +++KE+    +  ++ T++ V++   K G  ++   V+  
Sbjct: 195 LSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVED 254

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           MK+    P +IT+N +ID Y K     K + + K ++  +  P   TFN +I  + +   
Sbjct: 255 MKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDEN 314

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTL 264
              A+ VF++M      P+ +TY  +I   G C N  +  A  + D++S +G    V T 
Sbjct: 315 VTAAKKVFEEMQRQGLQPNVVTYNSLIN--GLCSNGKLDEALGLQDKMSGMGLKPNVVTY 372

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           NA++  +C   +  EA  + ++    G+ P+  T+  L  AY KA   +    L   M  
Sbjct: 373 NALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLD 432

Query: 325 NGIVPN 330
            G+ PN
Sbjct: 433 TGVCPN 438



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 12/148 (8%)

Query: 5   RWYIADTGI------YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH 58
           R  + DTG+      Y+ LI    ++G  + A  L  EM  +G + D   YN L+ A   
Sbjct: 427 RSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALC- 485

Query: 59  TRDKAKALAKALGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
              K     KA+    +M  ME+   + NIVTYN+L++       +++ N L  E+ E  
Sbjct: 486 ---KKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKG 542

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           L P+  TY+ + D   + G I +++  L
Sbjct: 543 LIPNRTTYDILRDEMMEKGFIPDIDGHL 570


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 152/324 (46%), Gaps = 5/324 (1%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D      L+    ++ +   A+ L  +M   G RPD   YNA+I +   TR     +
Sbjct: 151 YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTR----RV 206

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             AL +F+++ G +  +PN+VTY  L+     +   +    L +++ +  + P++ TY+ 
Sbjct: 207 NDALDFFKEI-GRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSA 265

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++DA+ KNG + E + +   M      PDI+T++ LI+        D+  Q+F  ++   
Sbjct: 266 LLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG 325

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P + ++N++I  + KA+       +F+KM+      + +TY  +I  +    +V +A+
Sbjct: 326 CFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQ 385

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E F ++   G    + T N +L   C NGL  +A ++FE+     +  D  TY  + +  
Sbjct: 386 EFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGM 445

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K    E    L   +   G+ P+
Sbjct: 446 CKTGKVEDAWGLFCSLSLKGLKPD 469



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 127/279 (45%), Gaps = 15/279 (5%)

Query: 59  TRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
           TR +   L  A+  F++M    R  P+IV +N LL A  + +  D V +L K++    + 
Sbjct: 59  TRLRDIKLHDAINLFREMVK-TRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIR 117

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
            D+YT+N V++ +     +    SVL +M     +PD +T   L++ + +R        +
Sbjct: 118 NDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSL 177

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
              ++    +P +  +N++I +  K R    A   F+++      P+ +TY  ++   G 
Sbjct: 178 VDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVN--GL 235

Query: 239 CDNVSRAREIFDELSKLGKDM-------KVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           C N  R    +++ ++L +DM        V T +A+L+A+  NG   EA  +FE    M 
Sbjct: 236 C-NSGR----WNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMS 290

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + PD  TY  L       +  +   ++   M   G  P+
Sbjct: 291 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPD 329



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 129/306 (42%), Gaps = 7/306 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  +   G+   A  L  +M      P+   Y+AL+ A +    K   + +A   F
Sbjct: 228 YTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFV----KNGKVLEAKEIF 283

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M  M    P+IVTY+ L+        +D+ N +F  +      PD+ +YN +++ + K
Sbjct: 284 EEMVRMS-IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCK 342

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              +++   +  +M       + +T+N LI  + +    DK ++ F  +      P + T
Sbjct: 343 AKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWT 402

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N ++       L  KA  +F+ M   +     +TY  +I        V  A  +F  LS
Sbjct: 403 YNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLS 462

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    + T   M+   C  GL  E + L+      G+  + S   L     T +   E
Sbjct: 463 LKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEGLMKNDSMLCLGDGDITIS--AE 520

Query: 314 LVQKLL 319
           L++K+L
Sbjct: 521 LIKKML 526



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 5/145 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR  + +T  Y+ LI    + G    A   FS+M + G  PD   YN L+          
Sbjct: 358 QRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDN---- 413

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L KAL  F+ M+  E    +IVTY  +++   +   V+    LF  L    L PDI T
Sbjct: 414 GLLEKALVIFEDMQKSEM-DLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVT 472

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMK 148
           Y  +M      G+  E+E++ ++MK
Sbjct: 473 YTTMMSGLCTKGLQHEVEALYTKMK 497



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 4/190 (2%)

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P I+ FN L+ +  K + +D +  + K +     +  L TFN +I  +        A  V
Sbjct: 83  PSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSV 142

Query: 214 FQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
             KM  + Y P  +T   ++   G+C  + VS A  + D++ ++G    +   NA++++ 
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVN--GFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSL 200

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           C      +A   F+     G+ P+  TY  L      +       +LL+ M +  I PN 
Sbjct: 201 CKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNV 260

Query: 332 RFFLEALETF 341
             +   L+ F
Sbjct: 261 ITYSALLDAF 270


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 162/372 (43%), Gaps = 38/372 (10%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-------- 56
           R  I D    + LI    + G+T+ A W+   +  SG  PD   YN LI+ +        
Sbjct: 86  RGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDN 145

Query: 57  -LHTRDKAKALAKALGYF-------------QKMKGMER-----CKPNIVTYNILLRACA 97
            L   D+       + Y              Q M+ ++R     C P+++TY IL+ A  
Sbjct: 146 ALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATC 205

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           +   V Q   L  E+      PD+ TYN +++   K G + E    L+ M S  C+P++I
Sbjct: 206 KESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVI 265

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           T N+++ S      +   E++   ++     P++ TFN +I    +  L G+A  + +KM
Sbjct: 266 THNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKM 325

Query: 218 TAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
                TP+ ++Y  +  ++G+C    + RA E  D +   G    + T N +L A C +G
Sbjct: 326 PMHGCTPNSLSYNPL--LHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDG 383

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335
               A  +     + G +P   TY  +    +K    E   KLL  M + G+ P+     
Sbjct: 384 KVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPD----- 438

Query: 336 EALETFSSSLAG 347
             + T+SS ++G
Sbjct: 439 --IITYSSLVSG 448



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 139/299 (46%), Gaps = 7/299 (2%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           Q Q+    D   Y+ LI    K+     AM L  EMRN G +PD   YN LI        
Sbjct: 185 QLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGIC---- 240

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPD 120
           K   L +A+ +   M     C+PN++T+NI+LR+ C+  R +D    L  ++     +P 
Sbjct: 241 KEGRLDEAIKFLNNMPSYG-CQPNVITHNIILRSMCSTGRWMD-AEKLLSDMLRKGCSPS 298

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + T+N +++   + G++     +L +M  + C P+ +++N L+  + K +  D+  +   
Sbjct: 299 VVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLD 358

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++     P + T+N+++    K      A  +  ++++   +P  ITY  +I       
Sbjct: 359 IMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVG 418

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
              RA ++ DE+ + G    + T ++++      G   EA   F +   +G+ P++ TY
Sbjct: 419 KTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITY 477



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 133/321 (41%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++  +   G+ + AM +        C PD   Y  LI A      K   + +A
Sbjct: 158 DVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATC----KESGVGQA 213

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +    +M+  +  KP++VTYN+L+    +   +D+       +      P++ T+N ++ 
Sbjct: 214 MKLLDEMRN-KGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILR 272

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           +    G   + E +LS M    C P ++TFN+LI+   ++    +   + + +      P
Sbjct: 273 SMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTP 332

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              ++N ++  + K +   +A      M +    P  +TY  ++T       V  A EI 
Sbjct: 333 NSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 392

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           ++LS  G    + T N +++     G    A  L +     G+ PD  TY  L    ++ 
Sbjct: 393 NQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSRE 452

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +   K    +E  GI PN
Sbjct: 453 GKVDEAIKFFHDLEGLGIRPN 473



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 5/243 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI  + ++G    A+ +  +M   GC P+   YN L    LH   K K + +A+ Y 
Sbjct: 302 FNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPL----LHGFCKEKKMDRAIEYL 357

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             M     C P+IVTYN LL A  +   VD    +  +L     +P + TYN V+D   K
Sbjct: 358 DIMVS-RGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSK 416

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G  +    +L  M+    KPDIIT++ L+    +    D+  + F  L     +P   T
Sbjct: 417 VGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAIT 476

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS+++   K+R   +A      M + +  P+  TY  +I    Y      A ++ +EL 
Sbjct: 477 YNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELC 536

Query: 254 KLG 256
             G
Sbjct: 537 SRG 539



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 80/200 (40%), Gaps = 7/200 (3%)

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           +NG +++    L  M      PDII    LI  + +     K   V + L  S   P + 
Sbjct: 69  RNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVI 128

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N +I  Y K+   G+ +   Q +  M   P  +TY  I+        + +A E+ D  
Sbjct: 129 TYNVLISGYCKS---GEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDR- 184

Query: 253 SKLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            +L K+    V T   ++EA C      +A  L +   N G  PD  TY +L     K  
Sbjct: 185 -QLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEG 243

Query: 311 MKELVQKLLKRMEQNGIVPN 330
             +   K L  M   G  PN
Sbjct: 244 RLDEAIKFLNNMPSYGCQPN 263


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 149/328 (45%), Gaps = 9/328 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D  IY+ +I    + G    A+ +  EM   GC PD   YN L+        K + L 
Sbjct: 13  VPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLC----KERRLL 68

Query: 68  KALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            A G   +M+  ER   P++ T+  L+        +D+   LF  +    L PDI TYN 
Sbjct: 69  DAEGLLNEMR--ERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNT 126

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++D   + G + +   +   M S +  P+ +T+++LIDS+ ++   +        +++  
Sbjct: 127 LIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKG 186

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P + T+NS+I  Y ++    K +   QKM   K +P  ITY  +I  Y   D +  A 
Sbjct: 187 ILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAF 246

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           ++ + + K      V T N ++  + ++G   EA  +FE     G+ PD  TY  +   +
Sbjct: 247 KLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGH 306

Query: 307 -TKANMKELVQKLLKRMEQNGIVPNKRF 333
            T  N KE  Q L   M Q G  P+ +F
Sbjct: 307 VTAGNSKEAFQ-LHDEMLQRGFAPDDKF 333



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 120/257 (46%), Gaps = 11/257 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   ++ LI     +G+   A+ LF  M N   RPD   YN LI       D 
Sbjct: 78  RERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGD- 136

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L KA   +  M   E   PN VTY+IL+ +  +   V+       E+    + P+I 
Sbjct: 137 ---LDKANDLWDDMHSRE-IFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIM 192

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++  Y ++G + + +  L +M  N+  PD+IT+N LI  Y K    DKM   FK L
Sbjct: 193 TYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKE---DKMHDAFKLL 249

Query: 183 -MHSKEK--PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
            M  KEK  P + T+N +I  +       +A ++F+KM A    P   TY  +I  +   
Sbjct: 250 NMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTA 309

Query: 240 DNVSRAREIFDELSKLG 256
            N   A ++ DE+ + G
Sbjct: 310 GNSKEAFQLHDEMLQRG 326



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 142/314 (45%), Gaps = 17/314 (5%)

Query: 31  MWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90
           M    EMR  G  PD  +Y  +I        +A  ++ AL    +M G   C P++VTYN
Sbjct: 1   MAYLREMRCFGLVPDGVIYTMVIGGFC----RAGLMSDALRVRDEMVGCG-CLPDVVTYN 55

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
            LL    + R +     L  E+ E  + PD+ T+  ++  Y   G + +   +   M + 
Sbjct: 56  TLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQ 115

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTFNSMIINYGKARLQGK 209
           + +PDI+T+N LID   ++   DK   ++   MHS+E  P   T++ +I ++ +   +G+
Sbjct: 116 RLRPDIVTYNTLIDGMCRQGDLDKANDLWDD-MHSREIFPNHVTYSILIDSHCE---KGQ 171

Query: 210 AEYVF---QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL--SKLGKDMKVSTL 264
            E  F    +M      P+ +TY  II  Y    NVS+ ++   ++  +K+  D+   T 
Sbjct: 172 VEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDL--ITY 229

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N ++  Y       +A  L        V PD  TY +L   ++     +    + ++M  
Sbjct: 230 NTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCA 289

Query: 325 NGIVPNKRFFLEAL 338
            GI P++  ++  +
Sbjct: 290 KGIEPDRYTYMSMI 303


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 160/338 (47%), Gaps = 17/338 (5%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+   I D  IY+ LI    +KG   +AM L +EM   GC  D   YN +    LH   K
Sbjct: 402 KEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTI----LHGLCK 457

Query: 63  AKALAKALGYFQKMKGMERCK-PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            K L +A   F +M   ER   P+  T  IL+    +  N+     LF+++ E  +  D+
Sbjct: 458 RKMLGEADKLFNEMT--ERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDV 515

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TYN ++D +GK G I   + + + M S +  P  I++++L+++   +    +  +V+  
Sbjct: 516 VTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDE 575

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC-- 239
           ++    KPT+   NSMI  Y ++      E   +KM +  + P  I+Y  +I  YG+   
Sbjct: 576 MISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLI--YGFVRE 633

Query: 240 DNVSRA----REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           +N+S+A    +++ +E   L  D  V T N++L  +C      EA+++       GV PD
Sbjct: 634 ENMSKAFGLVKKMEEEQGGLVPD--VFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPD 691

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
            STY  +   +   +      ++   M Q G  P+ +F
Sbjct: 692 RSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDDKF 729



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 156/327 (47%), Gaps = 15/327 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D+  Y  L+    KKG       +FS+MR+    PD   ++++++  L TR  +  L KA
Sbjct: 339 DSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMS--LFTR--SGNLDKA 394

Query: 70  LGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           L YF  +K  G+    P+ V Y IL++   +   +     L  E+ +   A D+ TYN +
Sbjct: 395 LMYFNSVKEAGL---IPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTI 451

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +    K  M+ E + + + M      PD  T  +LID + K        ++F+ +   + 
Sbjct: 452 LHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRI 511

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +  + T+N+++  +GK      A+ ++  M + +  P+ I+Y  ++       +++ A  
Sbjct: 512 RLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFR 571

Query: 248 IFDELSKLGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           ++DE+  + K++K  V   N+M++ YC +G  ++ +   E   + G  PD  +Y  L   
Sbjct: 572 VWDEM--ISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYG 629

Query: 306 YTKANMKELVQKLLKRM--EQNGIVPN 330
           + +         L+K+M  EQ G+VP+
Sbjct: 630 FVREENMSKAFGLVKKMEEEQGGLVPD 656



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 136/308 (44%), Gaps = 13/308 (4%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           LI  + + G   LA  ++ E+  SG   +    N ++ A L    K + +   L   Q+ 
Sbjct: 206 LIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNA-LCKDGKMEKVGTFLSQVQE- 263

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           KG+    P+IVTYN L+ A +    +++   L   +     +P +YTYN V++   K+G 
Sbjct: 264 KGV---YPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGK 320

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
            +  + V + M  +   PD  T+  L+    K+    + E+VF  +      P L  F+S
Sbjct: 321 YERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSS 380

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSK 254
           M+  + ++    KA   F  +      P  + Y  +I   GYC    +S A  + +E+ +
Sbjct: 381 MMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQ--GYCRKGMISVAMNLRNEMLQ 438

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK----AN 310
            G  M V T N +L   C   +  EAD LF       + PDS T  +L   + K     N
Sbjct: 439 QGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQN 498

Query: 311 MKELVQKL 318
             EL QK+
Sbjct: 499 AMELFQKM 506



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 146/312 (46%), Gaps = 5/312 (1%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S L+ ++ + G +RL +    +   S C  + SV++ LI  ++  R K +   +A    +
Sbjct: 134 SCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQAR-KLREAHEAFTLLR 192

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
             KG      +I   N L+ +  +   V+    +++E+  S +  ++YT N +++A  K+
Sbjct: 193 S-KGF---TVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKD 248

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G ++++ + LS+++     PDI+T+N LI +Y  +   ++  ++  ++      P + T+
Sbjct: 249 GKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTY 308

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N++I    K     +A+ VF +M     +P   TY  ++       +V    ++F ++  
Sbjct: 309 NTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRS 368

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
                 +   ++M+  +  +G   +A + F +    G+ PD+  Y +L + Y +  M  +
Sbjct: 369 RDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISV 428

Query: 315 VQKLLKRMEQNG 326
              L   M Q G
Sbjct: 429 AMNLRNEMLQQG 440



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 113/258 (43%), Gaps = 10/258 (3%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C  N   +++L+R   QAR + + +  F  L        I   N ++ +  + G ++   
Sbjct: 161 CGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAW 220

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK---PTLPTFNSMI 198
            V   +  +    ++ T N+++++  K     KME+V   L   +EK   P + T+N++I
Sbjct: 221 GVYQEISRSGVGINVYTLNIMVNALCKD---GKMEKVGTFLSQVQEKGVYPDIVTYNTLI 277

Query: 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLG 256
             Y    L  +A  +   M    ++P   TY  +I   G C +    RA+E+F E+ + G
Sbjct: 278 SAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVIN--GLCKHGKYERAKEVFAEMLRSG 335

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
                +T  ++L   C  G   E + +F +  +  V PD   +  +   +T++   +   
Sbjct: 336 LSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKAL 395

Query: 317 KLLKRMEQNGIVPNKRFF 334
                +++ G++P+   +
Sbjct: 396 MYFNSVKEAGLIPDNVIY 413


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 162/372 (43%), Gaps = 38/372 (10%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-------- 56
           R  I D    + LI    + G+T+ A W+   +  SG  PD   YN LI+ +        
Sbjct: 143 RGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDN 202

Query: 57  -LHTRDKAKALAKALGYF-------------QKMKGMER-----CKPNIVTYNILLRACA 97
            L   D+       + Y              Q M+ ++R     C P+++TY IL+ A  
Sbjct: 203 ALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATC 262

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           +   V Q   L  E+      PD+ TYN +++   K G + E    L+ M S  C+P++I
Sbjct: 263 KESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVI 322

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           T N+++ S      +   E++   ++     P++ TFN +I    +  L G+A  + +KM
Sbjct: 323 THNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKM 382

Query: 218 TAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
                TP+ ++Y  +  ++G+C    + RA E  D +   G    + T N +L A C +G
Sbjct: 383 PMHGCTPNSLSYNPL--LHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDG 440

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335
               A  +     + G +P   TY  +    +K    E   KLL  M + G+ P+     
Sbjct: 441 KVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPD----- 495

Query: 336 EALETFSSSLAG 347
             + T+SS ++G
Sbjct: 496 --IITYSSLVSG 505



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 139/299 (46%), Gaps = 7/299 (2%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           Q Q+    D   Y+ LI    K+     AM L  EMRN G +PD   YN LI        
Sbjct: 242 QLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGIC---- 297

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPD 120
           K   L +A+ +   M     C+PN++T+NI+LR+ C+  R +D    L  ++     +P 
Sbjct: 298 KEGRLDEAIKFLNNMPSYG-CQPNVITHNIILRSMCSTGRWMD-AEKLLSDMLRKGCSPS 355

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + T+N +++   + G++     +L +M  + C P+ +++N L+  + K +  D+  +   
Sbjct: 356 VVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLD 415

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++     P + T+N+++    K      A  +  ++++   +P  ITY  +I       
Sbjct: 416 IMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVG 475

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
              RA ++ DE+ + G    + T ++++      G   EA   F +   +G+ P++ TY
Sbjct: 476 KTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITY 534



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 133/321 (41%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++  +   G+ + AM +        C PD   Y  LI A      K   + +A
Sbjct: 215 DVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATC----KESGVGQA 270

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +    +M+  +  KP++VTYN+L+    +   +D+       +      P++ T+N ++ 
Sbjct: 271 MKLLDEMRN-KGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILR 329

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           +    G   + E +LS M    C P ++TFN+LI+   ++    +   + + +      P
Sbjct: 330 SMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTP 389

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              ++N ++  + K +   +A      M +    P  +TY  ++T       V  A EI 
Sbjct: 390 NSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 449

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           ++LS  G    + T N +++     G    A  L +     G+ PD  TY  L    ++ 
Sbjct: 450 NQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSRE 509

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +   K    +E  GI PN
Sbjct: 510 GKVDEAIKFFHDLEGLGIRPN 530



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 5/243 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI  + ++G    A+ +  +M   GC P+   YN L    LH   K K + +A+ Y 
Sbjct: 359 FNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPL----LHGFCKEKKMDRAIEYL 414

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             M     C P+IVTYN LL A  +   VD    +  +L     +P + TYN V+D   K
Sbjct: 415 DIMVS-RGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSK 473

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G  +    +L  M+    KPDIIT++ L+    +    D+  + F  L     +P   T
Sbjct: 474 VGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAIT 533

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS+++   K+R   +A      M + +  P+  TY  +I    Y      A ++ +EL 
Sbjct: 534 YNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELC 593

Query: 254 KLG 256
             G
Sbjct: 594 SRG 596



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 80/200 (40%), Gaps = 7/200 (3%)

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           +NG +++    L  M      PDII    LI  + +     K   V + L  S   P + 
Sbjct: 126 RNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVI 185

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N +I  Y K+   G+ +   Q +  M   P  +TY  I+        + +A E+ D  
Sbjct: 186 TYNVLISGYCKS---GEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDR- 241

Query: 253 SKLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            +L K+    V T   ++EA C      +A  L +   N G  PD  TY +L     K  
Sbjct: 242 -QLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEG 300

Query: 311 MKELVQKLLKRMEQNGIVPN 330
             +   K L  M   G  PN
Sbjct: 301 RLDEAIKFLNNMPSYGCQPN 320


>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
          Length = 592

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 160/358 (44%), Gaps = 40/358 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y  ++  + KKG T+ A  L   M     +PD  +YN +I A      K   L  A
Sbjct: 177 DEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVIDAFC----KDGMLDGA 232

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                +MK  +   P+I+TY  L+    +    ++V  LF E+    + PD+ T+N V+D
Sbjct: 233 TSLLNEMK-QKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVID 291

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K G +++ E +++ M     +P+ IT+N+++D Y  R    +  ++F S++    +P
Sbjct: 292 GLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEP 351

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT-------------YEC----- 231
            + ++ ++I  Y + +   KA  +F++++     PS +T              EC     
Sbjct: 352 DIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFF 411

Query: 232 --------IITMYGYC---------DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
                   I  +Y +C           V  A   F +L +  +D  +    A++   C N
Sbjct: 412 DEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKN 471

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
           G   +A   FE    +G+ PD  TY  +   Y +  + +  + +L++ME NG +P+ R
Sbjct: 472 GKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLPDNR 529



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 121/264 (45%), Gaps = 4/264 (1%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A+  F+K+     C+P+ V Y  ++    +  +  +   L + + + I  PD   YN V+
Sbjct: 161 AVHLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVI 220

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           DA+ K+GM+    S+L+ MK     PDIIT+  LID  GK   ++K+  +F  ++H    
Sbjct: 221 DAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIY 280

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAR 246
           P + TFNS+I    K      AE +   M      P+ ITY   + M GYC    + RAR
Sbjct: 281 PDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYN--VVMDGYCLRGQMGRAR 338

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            IFD +   G +  + +  A++  Y       +A  LF      G+ P   T  +L +  
Sbjct: 339 RIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGL 398

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            +    E  +     M+  G +PN
Sbjct: 399 FEVGRTECAKIFFDEMQAAGHIPN 422



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 139/321 (43%), Gaps = 14/321 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEM-RNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           ++ LI  +  + + + A+ LF ++ R + C PD  +Y  ++          KA       
Sbjct: 145 FTTLIRGLFAENKVKDAVHLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKA------- 197

Query: 73  FQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           F  ++ ME+   KP+   YNI++ A  +   +D   +L  E+ +  + PDI TY  ++D 
Sbjct: 198 FDLLRLMEQGITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDG 257

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
            GK    +++ ++   M      PD+ TFN +ID   K    +  E++   ++    +P 
Sbjct: 258 LGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPN 317

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             T+N ++  Y      G+A  +F  M      P  I+Y  +I  Y     + +A ++F 
Sbjct: 318 EITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFR 377

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+S+ G    + T + +L      G    A + F+     G  P+  T+  L   Y K  
Sbjct: 378 EISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNG 437

Query: 311 MKE----LVQKLLKRMEQNGI 327
           + E       KL +R E   I
Sbjct: 438 LVEEAMSHFHKLERRREDTNI 458



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 113/246 (45%), Gaps = 5/246 (2%)

Query: 24  KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK 83
           +GQ   A  +F  M + G  PD   Y ALI  ++    + K + KA+  F+++      K
Sbjct: 331 RGQMGRARRIFDSMIDKGIEPDIISYTALINGYV----EKKKMDKAMQLFREI-SQNGLK 385

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+IVT ++LLR   +    +     F E+  +   P++YT+  ++  Y KNG+++E  S 
Sbjct: 386 PSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSH 445

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
             +++  +   +I  +  +I+   K    DK    F+ L      P + T+ +MI  Y +
Sbjct: 446 FHKLERRREDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQ 505

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
             L  +A+ + +KM      P   TY  I+  +     VS  +    E++      + +T
Sbjct: 506 EGLLDEAKDMLRKMEDNGCLPDNRTYNVIVRGFFRSSKVSEMKAFLKEIAGKSFSFEAAT 565

Query: 264 LNAMLE 269
           +  +++
Sbjct: 566 VELLMD 571



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 67/330 (20%), Positives = 129/330 (39%), Gaps = 50/330 (15%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ +I  + K+G+   A  + + M   G  P+   YN ++  +         + +A
Sbjct: 282 DVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYC----LRGQMGRA 337

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F  M  KG+E   P+I++Y  L+    + + +D+   LF+E+ ++ L P I T + +
Sbjct: 338 RRIFDSMIDKGIE---PDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVL 394

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +    + G  +  +     M++    P++ T   L+  Y K    ++    F  L   +E
Sbjct: 395 LRGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRRE 454

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
              +  + ++I    K     KA   F+K+  +   P  ITY                  
Sbjct: 455 DTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITY------------------ 496

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
                             AM+  YC  GL  EA  +     + G  PD+ TY ++ + + 
Sbjct: 497 -----------------TAMISGYCQEGLLDEAKDMLRKMEDNGCLPDNRTYNVIVRGFF 539

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEA 337
           +++    ++  LK       +  K F  EA
Sbjct: 540 RSSKVSEMKAFLKE------IAGKSFSFEA 563



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 65/343 (18%), Positives = 132/343 (38%), Gaps = 76/343 (22%)

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           +  K L  A   F++M    +  P+ V+++ LL+A    ++   V ++F+E+H+  +  D
Sbjct: 48  ENVKCLDDAFSLFRQMV-TTKPLPSAVSFSKLLKALVHMKHYSSVVSIFREIHKLRIPVD 106

Query: 121 IYTYNGVMDA----------------YGKNGM-------------------IKEMESVLS 145
            +  + V+++                + K G+                   +K+   +  
Sbjct: 107 AFALSTVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFK 166

Query: 146 RM-KSNQCKPDIITF-----------------------------------NLLIDSYGKR 169
           ++ + N C+PD + +                                   N++ID++ K 
Sbjct: 167 KLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKD 226

Query: 170 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
              D    +   +      P + T+ S+I   GK     K   +F +M  +   P   T+
Sbjct: 227 GMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTF 286

Query: 230 ECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
             +I   G C    V  A EI   + + G +    T N +++ YC+ G    A  +F++ 
Sbjct: 287 NSVID--GLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSM 344

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            + G+ PD  +Y  L   Y +    +   +L + + QNG+ P+
Sbjct: 345 IDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPS 387



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ +I  + K G+   A   F ++   G  PD   Y A+I+ +     +   L +A   
Sbjct: 460 IYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYC----QEGLLDEAKDM 515

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            +KM+    C P+  TYN+++R   ++  V ++ A  KE+     + +  T   +MD   
Sbjct: 516 LRKMED-NGCLPDNRTYNVIVRGFFRSSKVSEMKAFLKEIAGKSFSFEAATVELLMDIIA 574

Query: 133 KN 134
           ++
Sbjct: 575 ED 576


>gi|218200855|gb|EEC83282.1| hypothetical protein OsI_28637 [Oryza sativa Indica Group]
          Length = 662

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 149/312 (47%), Gaps = 20/312 (6%)

Query: 35  SEMRNSGCRPDPSVYNAL-------------ITAHLHTRDKAKALAKALGYFQKM--KGM 79
           +EM   G RP+  +  A              +     T +K K + +A    Q M  KG+
Sbjct: 211 NEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGKYMKEATKVIQTMLNKGI 270

Query: 80  ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
           E    + +TYNI++R C +   +++   L  ++      PD++T+N ++ AY   G ++E
Sbjct: 271 EL---DSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEE 327

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
              +L +MK+   +PDI+++  +ID + K +   K ++    LM    KP +  +N++I 
Sbjct: 328 TFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIG 387

Query: 200 NYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 258
            YG+   + G  + V + M +    P+ +TY  ++    +   V  A+ IF +  +   D
Sbjct: 388 GYGRNGDISGAIDAV-ETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVD 446

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
           + V     M++ YC  G   EA   FE   + G++P+  TY  L  AY+K+   E   KL
Sbjct: 447 LGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKL 506

Query: 319 LKRMEQNGIVPN 330
              M  +G++P+
Sbjct: 507 FDEMVGSGVIPD 518



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 85/184 (46%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           N  +Y  +++A  +A  VD    +  EL  + L P + TYN +MDA  K+G ++E   + 
Sbjct: 10  NEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLK 69

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
            RM+     P ++TF +LI+   + + F ++  V + +      P    +N +I  + + 
Sbjct: 70  GRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRK 129

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
               +A  +F +M   K  P+ +TY  I         + RA  I +++  +G  +     
Sbjct: 130 GHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLF 189

Query: 265 NAML 268
           N ++
Sbjct: 190 NTVV 193



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 118/287 (41%), Gaps = 28/287 (9%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R +  D   ++ L+      G+      L  +M+  G +PD   Y  +I  H     KA
Sbjct: 302 RRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHC----KA 357

Query: 64  KALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           K + KA  Y  ++  M+R  KPN+  YN L+    +  ++       + +  + + P   
Sbjct: 358 KDIRKAKEYLTEL--MDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNV 415

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  +M      G+++E +++ S+ + N     +I + ++I  Y K     +    F+ +
Sbjct: 416 TYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEM 475

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII--------- 233
                 P   T+ +++  Y K+    +A  +F +M      P  ITY  +I         
Sbjct: 476 RSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEKGGK 535

Query: 234 -TMYG---YCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
            T YG   +CD   +  A  I D     G  +K       LE+ CM+
Sbjct: 536 TTQYGQELHCDLSKLLSADWIMDTQVHFGHQLK------HLESQCMD 576



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/266 (19%), Positives = 108/266 (40%), Gaps = 18/266 (6%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P +VTYN+L+ A  ++  V++   L   + +  + P + T+  +++   +     E+  
Sbjct: 43  QPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGI 102

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           VL  M+     P+ + +N LI  + ++    +  ++F  ++  K KPT  T+N +     
Sbjct: 103 VLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALC 162

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIIT-MYGYCDNVSRAREIFDELSKLGKDMKV 261
           K     +AE + + M ++  T     +  ++  +      +     I +E+   G     
Sbjct: 163 KEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPND 222

Query: 262 STLNAMLEAYCMNGLPTEADLLF-----------------ENSHNMGVTPDSSTYKLLYK 304
             + A +   C  G   EA  ++                 +   N G+  DS TY ++ +
Sbjct: 223 PLMTACMRELCKGGKHQEAVGIWFKTLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIR 282

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
              K +  E   KL   M + G  P+
Sbjct: 283 GCCKDSKMEEAIKLHGDMTRRGFKPD 308



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 100/217 (46%), Gaps = 5/217 (2%)

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           +A + Y+Y  ++ A  K G +     +L+ +     +P ++T+N+L+D+  K    ++  
Sbjct: 7   VALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAF 66

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           ++   +      P++ TF  +I    +    G+   V Q+M  +  +P+ + Y  +I  +
Sbjct: 67  RLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWH 126

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVS--TLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
               + S+A  +FDE+  + K MK +  T N + +A C  G    A+ + E+  ++G+T 
Sbjct: 127 CRKGHCSQALRLFDEM--VLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTV 184

Query: 295 DSSTYKLLYKAYTKANMK-ELVQKLLKRMEQNGIVPN 330
               +  +     +   + E V  +   M   G+ PN
Sbjct: 185 HCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPN 221



 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 44/97 (45%)

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           V    E+  EL + G    V T N +++A C +G   EA  L       G+TP   T+ +
Sbjct: 27  VDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGI 86

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           L     +      V  +L+ MEQ G+ PN+  + E +
Sbjct: 87  LINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELI 123


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 155/357 (43%), Gaps = 30/357 (8%)

Query: 8    IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA-- 65
            + DT +Y+ LI    K+G  R A   F EM +    PD   Y A+I+      D  +A  
Sbjct: 791  LPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGK 850

Query: 66   -----LAKAL------------GYFQ--KMKGMER---------CKPNIVTYNILLRACA 97
                   K L            GY +   MK   R         C PN+VTY  L+    
Sbjct: 851  LFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC 910

Query: 98   QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
            +  ++D  N L  E+ +  L P+I+TYN +++   K+G I+E   ++   ++     D +
Sbjct: 911  KEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTV 970

Query: 158  TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
            T+  L+D+Y K    DK +++ K ++    +PT+ TFN ++  +    +    E +   M
Sbjct: 971  TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 1030

Query: 218  TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
             A    P+  T+  ++  Y   +N+  A  I+ ++   G      T   +++ +C     
Sbjct: 1031 LAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNM 1090

Query: 278  TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
             EA  LF+     G +   STY +L K + K       +++  +M + G+  +K  F
Sbjct: 1091 KEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF 1147



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 144/320 (45%), Gaps = 5/320 (1%)

Query: 13   IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
            IY  +I ++ +  +   A   FSEM   G  PD  VY  LI      R   +A +K   +
Sbjct: 761  IYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCK-RGDIRAASK---F 816

Query: 73   FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            F +M   +   P+++TY  ++    Q  ++ +   LF E+    L PD  T+  +++ Y 
Sbjct: 817  FYEMHSRD-ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYC 875

Query: 133  KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
            K G +K+   V + M    C P+++T+  LID   K    D   ++   +     +P + 
Sbjct: 876  KAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIF 935

Query: 193  TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            T+NS++    K+    +A  +  +  A       +TY  ++  Y     + +A+EI  E+
Sbjct: 936  TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEM 995

Query: 253  SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
               G    + T N ++  +C++G+  + + L       G+ P+++T+  L K Y   N  
Sbjct: 996  LGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNL 1055

Query: 313  ELVQKLLKRMEQNGIVPNKR 332
            +    + K M   G+ P+ +
Sbjct: 1056 KAATAIYKDMCSRGVGPDGK 1075



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 134/343 (39%), Gaps = 46/343 (13%)

Query: 26   QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85
            +T  A+ +F E    G   + + YN +I  H   +      A  L    ++KG     P+
Sbjct: 669  KTATAIIVFREFPEVGVCWNVASYNIVI--HFVCQLGRIKEAHHLLLLMELKGY---TPD 723

Query: 86   IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
            +++Y+ ++    +   +D+V  L + +    L P+ Y Y  ++    +   + E E   S
Sbjct: 724  VISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFS 783

Query: 146  RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE------------------ 187
             M      PD + +  LID + KR       + F   MHS++                  
Sbjct: 784  EMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYE-MHSRDITPDVLTYTAIISGFCQI 842

Query: 188  ------------------KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
                              +P   TF  +I  Y KA     A  V   M     +P+ +TY
Sbjct: 843  GDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTY 902

Query: 230  ECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
              +I   G C   ++  A E+  E+ K+G    + T N+++   C +G   EA  L    
Sbjct: 903  TTLID--GLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 960

Query: 288  HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
               G+  D+ TY  L  AY K+   +  Q++LK M   G+ P 
Sbjct: 961  EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPT 1003



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 135/322 (41%), Gaps = 4/322 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           +D  ++     V+   G  R A  +F +M N G        N  +T    ++D  K  A 
Sbjct: 616 SDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRL--SKDCYKT-AT 672

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A+  F++   +  C  N+ +YNI++    Q   + + + L   +      PD+ +Y+ V+
Sbjct: 673 AIIVFREFPEVGVCW-NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVV 731

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + Y + G + ++  ++  MK    KP+   +  +I    +     + E+ F  ++     
Sbjct: 732 NGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGIL 791

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P    + ++I  + K      A   F +M +   TP  +TY  II+ +    ++  A ++
Sbjct: 792 PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKL 851

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F E+   G +    T   ++  YC  G   +A  +  +    G +P+  TY  L     K
Sbjct: 852 FHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCK 911

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
               +   +LL  M + G+ PN
Sbjct: 912 EGDLDSANELLHEMWKIGLQPN 933



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 12/178 (6%)

Query: 162 LIDSYGKRQAF---DKMEQVFKSLMHS-----KEKPTLPTFNSMIINYGKARLQGKAEYV 213
           LI S+ +R      D   Q F  L+++      +      F  +++++G  R   +A  V
Sbjct: 584 LISSFWERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLR---EARRV 640

Query: 214 FQKMTAMKYTPSFITYECIIT-MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           F+KM       S  +    +T +   C   + A  +F E  ++G    V++ N ++   C
Sbjct: 641 FEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVC 700

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             G   EA  L       G TPD  +Y  +   Y +    + V KL++ M++ G+ PN
Sbjct: 701 QLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPN 758


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 149/328 (45%), Gaps = 9/328 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D  IY+ +I    + G    A+ +  EM   GC PD   YN L+        K + L 
Sbjct: 328 VPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLC----KERRLL 383

Query: 68  KALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            A G   +M+  ER   P++ T+  L+        +D+   LF  +    L PDI TYN 
Sbjct: 384 DAEGLLNEMR--ERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNT 441

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++D   + G + +   +   M S +  P+ +T+++LIDS+ ++   +        +++  
Sbjct: 442 LIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKG 501

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P + T+NS+I  Y ++    K +   QKM   K +P  ITY  +I  Y   D +  A 
Sbjct: 502 ILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAF 561

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           ++ + + K      V T N ++  + ++G   EA  +FE     G+ PD  TY  +   +
Sbjct: 562 KLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGH 621

Query: 307 -TKANMKELVQKLLKRMEQNGIVPNKRF 333
            T  N KE  Q L   M Q G  P+ +F
Sbjct: 622 VTAGNSKEAFQ-LHDEMLQRGFAPDDKF 648



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 152/335 (45%), Gaps = 17/335 (5%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R    D   +S LI +  ++G+   AM    EMR  G  PD  +Y  +I        +
Sbjct: 288 RHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFC----R 343

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A  ++ AL    +M G   C P++VTYN LL    + R +     L  E+ E  + PD+ 
Sbjct: 344 AGLMSDALRVRDEMVGCG-CLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLC 402

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           T+  ++  Y   G + +   +   M + + +PDI+T+N LID   ++   DK   ++   
Sbjct: 403 TFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDD- 461

Query: 183 MHSKEK-PTLPTFNSMIINYGKARLQGKAEYVF---QKMTAMKYTPSFITYECIITMYGY 238
           MHS+E  P   T++ +I ++ +   +G+ E  F    +M      P+ +TY  II  Y  
Sbjct: 462 MHSREIFPNHVTYSILIDSHCE---KGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCR 518

Query: 239 CDNVSRAREIFDEL--SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
             NVS+ ++   ++  +K+  D+   T N ++  Y       +A  L        V PD 
Sbjct: 519 SGNVSKGQKFLQKMMVNKVSPDL--ITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDV 576

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
            TY +L   ++     +    + ++M   GI P++
Sbjct: 577 VTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDR 611



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 140/314 (44%), Gaps = 14/314 (4%)

Query: 24  KGQTRLAMW-----LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKG 78
           KG  R  MW     +F EM + G  PD   +  LI        +   + +AL  +++M+ 
Sbjct: 234 KGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFC----RVGEIEEALKIYKEMR- 288

Query: 79  MERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIK 138
               KP++V+++ L+   A+   +D   A  +E+    L PD   Y  V+  + + G++ 
Sbjct: 289 HRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMS 348

Query: 139 EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 198
           +   V   M    C PD++T+N L++   K +     E +   +      P L TF ++I
Sbjct: 349 DALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLI 408

Query: 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLG 256
             Y       KA  +F  M   +  P  +TY  +I   G C   ++ +A +++D++    
Sbjct: 409 HGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLID--GMCRQGDLDKANDLWDDMHSRE 466

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
                 T + +++++C  G   +A    +   N G+ P+  TY  + K Y ++      Q
Sbjct: 467 IFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQ 526

Query: 317 KLLKRMEQNGIVPN 330
           K L++M  N + P+
Sbjct: 527 KFLQKMMVNKVSPD 540



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 120/257 (46%), Gaps = 11/257 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   ++ LI     +G+   A+ LF  M N   RPD   YN LI       D 
Sbjct: 393 RERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGD- 451

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L KA   +  M   E   PN VTY+IL+ +  +   V+       E+    + P+I 
Sbjct: 452 ---LDKANDLWDDMHSRE-IFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIM 507

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++  Y ++G + + +  L +M  N+  PD+IT+N LI  Y K    DKM   FK L
Sbjct: 508 TYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKE---DKMHDAFKLL 564

Query: 183 -MHSKEK--PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
            M  KEK  P + T+N +I  +       +A ++F+KM A    P   TY  +I  +   
Sbjct: 565 NMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTA 624

Query: 240 DNVSRAREIFDELSKLG 256
            N   A ++ DE+ + G
Sbjct: 625 GNSKEAFQLHDEMLQRG 641



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 108/251 (43%), Gaps = 3/251 (1%)

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCK-PNIVTYNILLRACAQARNVDQVNALFKELHES 115
           +H   KA    K      +M+  +RC  P++VT+N+++ A  +A + +   AL   +   
Sbjct: 163 VHNYCKALEFDKVDAVISEME--KRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSK 220

Query: 116 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 175
            L P I TYN V+    ++GM  +   V   M      PD+ +F +LI  + +    ++ 
Sbjct: 221 GLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEA 280

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
            +++K + H   KP L +F+ +I  + +      A    ++M      P  + Y  +I  
Sbjct: 281 LKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGG 340

Query: 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           +     +S A  + DE+   G    V T N +L   C      +A+ L       GV PD
Sbjct: 341 FCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPD 400

Query: 296 SSTYKLLYKAY 306
             T+  L   Y
Sbjct: 401 LCTFTTLIHGY 411



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/209 (19%), Positives = 92/209 (44%)

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           YT N ++  Y K     ++++V+S M+     PD++T N+++D+  +    +    +  S
Sbjct: 157 YTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDS 216

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++    KP + T+NS++    ++ +  KA  VF++M      P   ++  +I  +     
Sbjct: 217 MVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGE 276

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +  A +I+ E+   G    + + + ++  +   G    A          G+ PD   Y +
Sbjct: 277 IEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTM 336

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +   + +A +     ++   M   G +P+
Sbjct: 337 VIGGFCRAGLMSDALRVRDEMVGCGCLPD 365



 Score = 37.7 bits (86), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 89/224 (39%), Gaps = 33/224 (14%)

Query: 135 GMIKEMESVLSRM--KSNQCKPDIIT-------------FNLLIDSYGK----RQAFDKM 175
           G   E +S+L RM  +   C+ +I++             F+LLI +Y +    R+AF+  
Sbjct: 50  GRASECQSLLLRMSRRRGACRREIVSSLLGSSPTPQPRVFDLLIRTYTQSRKPREAFEAF 109

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINY--GKARLQGKA-EYVFQKMTAMKYTPSFITYECI 232
             +   L H    P   +   +      G   L   A   VF   + +       TY   
Sbjct: 110 RLI---LDHRVPIPAAASNALLAALSRAGWPHLAADAYRLVFSSNSEVN------TYTLN 160

Query: 233 ITMYGYCDNV--SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
           I ++ YC  +   +   +  E+ K      V T N M++A    G    A  L ++  + 
Sbjct: 161 IMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSK 220

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           G+ P   TY  + K   ++ M +   ++ K M+  G+ P+ R F
Sbjct: 221 GLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSF 264


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 150/320 (46%), Gaps = 11/320 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G T  A+ L   M    C+PD  VY ++I +      K + + +A   F
Sbjct: 176 YGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLC----KDRQVTQAFNLF 231

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   +   P+I TYN L+ A         V AL  E+  S + P++  ++ V+DA  K
Sbjct: 232 SEMIH-QGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCK 290

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + E   V+  M     +P+++T+N L+D +  R   D+  +VF +++     P + +
Sbjct: 291 EGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVS 350

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE---IFD 250
           ++++I  Y K +   KA Y+F++M   +  P+ +TY  +  M+G C +V R ++   +F 
Sbjct: 351 YSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTL--MHGLC-HVGRLQDAIALFH 407

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+   G+     +   +L+  C N    EA  L +      + PD   Y ++     +A 
Sbjct: 408 EMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAG 467

Query: 311 MKELVQKLLKRMEQNGIVPN 330
             E  + L   +   G+ PN
Sbjct: 468 ELEAARDLFSNLSSKGLHPN 487



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 139/323 (43%), Gaps = 8/323 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           IAD   ++KL+  + K       + L  +M + G  P+    N LI +  H     + L 
Sbjct: 68  IAD---FTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCH----LQRLG 120

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            A     K+  +   +PNI T+N L+R       + +V  LF ++      P++ TY  +
Sbjct: 121 FAFSVLAKILKLGH-QPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTL 179

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++   K G       +L  M+   C+PD++ +  +IDS  K +   +   +F  ++H   
Sbjct: 180 INGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGI 239

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P++ T+NS+I              +  +M   K  P+ + +  ++        V  A +
Sbjct: 240 SPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHD 299

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + D + K G +  V T NA+++ +C+     EA  +F+     G  PD  +Y  L   Y 
Sbjct: 300 VVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYC 359

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           K    E    L + M +  ++PN
Sbjct: 360 KIQRIEKAMYLFEEMCRKELIPN 382



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 148/353 (41%), Gaps = 48/353 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ +I  + K  Q   A  LFSEM + G  P    YN+LI A L    + K +   
Sbjct: 207 DVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHA-LCNLCEWKHVTAL 265

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L      K M    PN+V ++ ++ A  +   V + + +   + +  + P++ TYN +MD
Sbjct: 266 LNEMVNSKIM----PNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMD 321

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +     + E   V   M      PD+++++ LI+ Y K Q  +K   +F+ +   +  P
Sbjct: 322 GHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIP 381

Query: 190 TLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMY------------ 236
              T+++++       RLQ  A  +F +M      P F++Y CI+  Y            
Sbjct: 382 NTVTYSTLMHGLCHVGRLQ-DAIALFHEMVTRGQIPDFVSY-CILLDYLCKNRRLDEAIA 439

Query: 237 ----------------------GYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
                                 G C    +  AR++F  LS  G    V T   M+   C
Sbjct: 440 LLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLC 499

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK----ELVQKLLKR 321
             GL  EA  LF      G +P+  TY L+ + + + N      +L+Q++L R
Sbjct: 500 QQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLAR 552



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 99/231 (42%), Gaps = 5/231 (2%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           + +  D   YS LI    K  +   AM+LF EM      P+   Y+ L+    H      
Sbjct: 342 KGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCH----VG 397

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            L  A+  F +M    +  P+ V+Y ILL    + R +D+  AL K +  S + PDI  Y
Sbjct: 398 RLQDAIALFHEMVTRGQI-PDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIY 456

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
             V+D   + G ++    + S + S    P++ T+ ++I+   ++    +  ++F  +  
Sbjct: 457 TIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKR 516

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
               P   T+N +   + +     +   + Q+M A  ++    T   ++ M
Sbjct: 517 KGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEM 567



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 3/201 (1%)

Query: 137 IKEMESVLS---RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +K   +VLS   +M S    P+I T N+LI+S+   Q       V   ++    +P + T
Sbjct: 81  MKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIAT 140

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           FN++I         G+  ++F KM    + P+ +TY  +I       + S A  +   + 
Sbjct: 141 FNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSME 200

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           +      V    +++++ C +   T+A  LF    + G++P   TY  L  A       +
Sbjct: 201 QGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWK 260

Query: 314 LVQKLLKRMEQNGIVPNKRFF 334
            V  LL  M  + I+PN   F
Sbjct: 261 HVTALLNEMVNSKIMPNVVIF 281



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 66/163 (40%)

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           F  ++H    P++  F  ++I+  K +       +  +M +    P+  T   +I  + +
Sbjct: 56  FNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCH 115

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              +  A  +  ++ KLG    ++T N ++   C+ G   E   LF+     G  P+  T
Sbjct: 116 LQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVT 175

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           Y  L     K        +LL+ MEQ    P+   +   +++ 
Sbjct: 176 YGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSL 218



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 69/191 (36%), Gaps = 4/191 (2%)

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           S  +RM      P I  F  L+ S  K + +  +  +   +      P + T N +I ++
Sbjct: 54  SSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSF 113

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDM 259
              +  G A  V  K+  + + P+  T+  +I   G C    +     +FD++   G   
Sbjct: 114 CHLQRLGFAFSVLAKILKLGHQPNIATFNTLIR--GLCVEGKIGEVLHLFDKMIGEGFQP 171

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            V T   ++   C  G  + A  L  +       PD   Y  +  +  K         L 
Sbjct: 172 NVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLF 231

Query: 320 KRMEQNGIVPN 330
             M   GI P+
Sbjct: 232 SEMIHQGISPS 242


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 150/320 (46%), Gaps = 11/320 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G T  A+ L   M    C+PD  VY ++I +      K + + +A   F
Sbjct: 167 YGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLC----KDRQVTQAFNLF 222

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   +   P+I TYN L+ A         V AL  E+  S + P++  ++ V+DA  K
Sbjct: 223 SEMIH-QGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCK 281

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + E   V+  M     +P+++T+N L+D +  R   D+  +VF +++     P + +
Sbjct: 282 EGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVS 341

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE---IFD 250
           ++++I  Y K +   KA Y+F++M   +  P+ +TY  +  M+G C +V R ++   +F 
Sbjct: 342 YSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTL--MHGLC-HVGRLQDAIALFH 398

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+   G+     +   +L+  C N    EA  L +      + PD   Y ++     +A 
Sbjct: 399 EMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAG 458

Query: 311 MKELVQKLLKRMEQNGIVPN 330
             E  + L   +   G+ PN
Sbjct: 459 ELEAARDLFSNLSSKGLHPN 478



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 139/323 (43%), Gaps = 8/323 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           IAD   ++KL+  + K       + L  +M + G  P+    N LI +  H     + L 
Sbjct: 59  IAD---FTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHL----QRLG 111

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            A     K+  +   +PNI T+N L+R       + +V  LF ++      P++ TY  +
Sbjct: 112 FAFSVLAKILKLGH-QPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTL 170

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++   K G       +L  M+   C+PD++ +  +IDS  K +   +   +F  ++H   
Sbjct: 171 INGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGI 230

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P++ T+NS+I              +  +M   K  P+ + +  ++        V  A +
Sbjct: 231 SPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHD 290

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + D + K G +  V T NA+++ +C+     EA  +F+     G  PD  +Y  L   Y 
Sbjct: 291 VVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYC 350

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           K    E    L + M +  ++PN
Sbjct: 351 KIQRIEKAMYLFEEMCRKELIPN 373



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 148/353 (41%), Gaps = 48/353 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ +I  + K  Q   A  LFSEM + G  P    YN+LI A L    + K +   
Sbjct: 198 DVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHA-LCNLCEWKHVTAL 256

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L      K M    PN+V ++ ++ A  +   V + + +   + +  + P++ TYN +MD
Sbjct: 257 LNEMVNSKIM----PNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMD 312

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +     + E   V   M      PD+++++ LI+ Y K Q  +K   +F+ +   +  P
Sbjct: 313 GHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIP 372

Query: 190 TLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMY------------ 236
              T+++++       RLQ  A  +F +M      P F++Y CI+  Y            
Sbjct: 373 NTVTYSTLMHGLCHVGRLQ-DAIALFHEMVTRGQIPDFVSY-CILLDYLCKNRRLDEAIA 430

Query: 237 ----------------------GYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
                                 G C    +  AR++F  LS  G    V T   M+   C
Sbjct: 431 LLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLC 490

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK----ELVQKLLKR 321
             GL  EA  LF      G +P+  TY L+ + + + N      +L+Q++L R
Sbjct: 491 QQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLAR 543



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 99/231 (42%), Gaps = 5/231 (2%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           + +  D   YS LI    K  +   AM+LF EM      P+   Y+ L+    H      
Sbjct: 333 KGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCH----VG 388

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            L  A+  F +M    +  P+ V+Y ILL    + R +D+  AL K +  S + PDI  Y
Sbjct: 389 RLQDAIALFHEMVTRGQI-PDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIY 447

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
             V+D   + G ++    + S + S    P++ T+ ++I+   ++    +  ++F  +  
Sbjct: 448 TIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKR 507

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
               P   T+N +   + +     +   + Q+M A  ++    T   ++ M
Sbjct: 508 KGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEM 558



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 3/201 (1%)

Query: 137 IKEMESVLS---RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +K   +VLS   +M S    P+I T N+LI+S+   Q       V   ++    +P + T
Sbjct: 72  MKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIAT 131

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           FN++I         G+  ++F KM    + P+ +TY  +I       + S A  +   + 
Sbjct: 132 FNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSME 191

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           +      V    +++++ C +   T+A  LF    + G++P   TY  L  A       +
Sbjct: 192 QGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWK 251

Query: 314 LVQKLLKRMEQNGIVPNKRFF 334
            V  LL  M  + I+PN   F
Sbjct: 252 HVTALLNEMVNSKIMPNVVIF 272



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 66/163 (40%)

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           F  ++H    P++  F  ++I+  K +       +  +M +    P+  T   +I  + +
Sbjct: 47  FNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCH 106

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              +  A  +  ++ KLG    ++T N ++   C+ G   E   LF+     G  P+  T
Sbjct: 107 LQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVT 166

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           Y  L     K        +LL+ MEQ    P+   +   +++ 
Sbjct: 167 YGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSL 209



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 69/191 (36%), Gaps = 4/191 (2%)

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           S  +RM      P I  F  L+ S  K + +  +  +   +      P + T N +I ++
Sbjct: 45  SSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSF 104

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDM 259
              +  G A  V  K+  + + P+  T+  +I   G C    +     +FD++   G   
Sbjct: 105 CHLQRLGFAFSVLAKILKLGHQPNIATFNTLIR--GLCVEGKIGEVLHLFDKMIGEGFQP 162

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            V T   ++   C  G  + A  L  +       PD   Y  +  +  K         L 
Sbjct: 163 NVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLF 222

Query: 320 KRMEQNGIVPN 330
             M   GI P+
Sbjct: 223 SEMIHQGISPS 233


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 155/334 (46%), Gaps = 12/334 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L++ +  K +   A+ LF EM   G  PD   Y+ +I       +   AL       
Sbjct: 13  FNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMAL------- 65

Query: 74  QKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           Q +K ME   CKPN+V YN ++ +  + R V +    F E+ +  + PD++TY+ ++  +
Sbjct: 66  QLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGF 125

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
              G + E  S+  +M      P+ +TF +LID   K++   +   VF+++     +P +
Sbjct: 126 CNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDV 185

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+N+++  Y       +A+ +F  M      P+  +Y  +I  +     +  A+ +  E
Sbjct: 186 YTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAE 245

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +S       + T + ++  +C  G P EA  L +   + G+ P+  TY ++     K   
Sbjct: 246 MSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGH 305

Query: 312 KELVQKLLKRMEQNGIVPNKRFF---LEALETFS 342
            +   +LLK M+++ I PN   +   +E + TF 
Sbjct: 306 LDEAFELLKAMQESKIEPNIFIYTILIEGMCTFG 339



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 156/357 (43%), Gaps = 42/357 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS +I  + K G T +A+ L  +M   GC+P+   YN +I +      K + + +A
Sbjct: 44  DVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLC----KDRLVTEA 99

Query: 70  LGYFQKM---------------------------------KGMER-CKPNIVTYNILLRA 95
           + +F +M                                 + +ER   PN VT+ IL+  
Sbjct: 100 MDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDG 159

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
             + R + +   +F+ + E  L PD+YTYN ++D Y     + E + + + M    C P+
Sbjct: 160 LCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPN 219

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
           + ++N+LI+ + K    D+ + +   + H    P + T+++++  + +     +A+ + +
Sbjct: 220 VRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLK 279

Query: 216 KMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           +M +    P+ ITY   I + G C   ++  A E+   + +   +  +     ++E  C 
Sbjct: 280 EMCSYGLLPNLITYS--IVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCT 337

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            G    A  LF N    G+ P   TY ++     K  +     +L + M  NG +PN
Sbjct: 338 FGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPN 394



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 143/304 (47%), Gaps = 15/304 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R  I +   ++ LI  + KK     A  +F  M   G  PD   YNAL+  +  +R + 
Sbjct: 143 ERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYC-SRSQM 201

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
               K      + KG   C PN+ +YNIL+    ++  +D+   L  E+    L PDI+T
Sbjct: 202 DEAQKLFNIMDR-KG---CAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFT 257

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ +M  + + G  +E + +L  M S    P++IT+++++D   K    D+  ++ K++ 
Sbjct: 258 YSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQ 317

Query: 184 HSKEKPTLPTFNSMI---INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT--MYGY 238
            SK +P +  +  +I     +GK      A  +F  +      P+ +TY  +I+  + G 
Sbjct: 318 ESKIEPNIFIYTILIEGMCTFGKLE---AARELFSNLFVKGIQPTVVTYTVMISGLLKGG 374

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             N   A E+F E++  G      T N +++ +  NG    A  L E     G + DSST
Sbjct: 375 LSN--EACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSST 432

Query: 299 YKLL 302
           +++L
Sbjct: 433 FRML 436



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 135/287 (47%), Gaps = 43/287 (14%)

Query: 83  KPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           +P +VT+N LL   C++A+ +D V  LF E+ +    PD+ TY+ +++   K G      
Sbjct: 7   QPTLVTFNTLLSGLCSKAKIMDAVK-LFDEMVKMGHEPDVITYSTIINGLCKMGNTTMAL 65

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQVFK-----------SLMHS- 185
            +L +M+   CKP+++ +N +IDS  K     +A D   ++ K           S++H  
Sbjct: 66  QLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGF 125

Query: 186 ----------------KEKPTLP---TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
                            E+  +P   TF  +I    K R+  +A  VF+ MT     P  
Sbjct: 126 CNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDV 185

Query: 227 ITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA-DLL 283
            TY  ++   GYC    +  A+++F+ + + G    V + N ++  +C +G   EA  LL
Sbjct: 186 YTYNALVD--GYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLL 243

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            E SH   +TPD  TY  L + + +    +  Q+LLK M   G++PN
Sbjct: 244 AEMSHK-SLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPN 289



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 151/357 (42%), Gaps = 17/357 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS ++      G+   A  LF +M      P+   +  LI        K + +++A
Sbjct: 114 DVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLC----KKRMISEA 169

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F+ M  KG+E   P++ TYN L+        +D+   LF  +     AP++ +YN +
Sbjct: 170 WLVFETMTEKGLE---PDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNIL 226

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++ + K+G I E + +L+ M      PDI T++ L+  + +     + +++ K +     
Sbjct: 227 INGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGL 286

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM---KYTPSFITYECIITMYGYCDNVSR 244
            P L T++ ++    K    G  +  F+ + AM   K  P+   Y  +I        +  
Sbjct: 287 LPNLITYSIVLDGLCK---HGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEA 343

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           ARE+F  L   G    V T   M+      GL  EA  LF      G  P+S TY ++ +
Sbjct: 344 ARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQ 403

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFF--LEALETFSSSLAGSQSGSAKTDLTR 359
            + +        +L++ M   G   +   F  L  LE+    ++    GS++   T+
Sbjct: 404 GFLRNGDTPNAVRLIEEMVGKGFSADSSTFRMLSDLESSDEIISQFMRGSSQDRKTK 460



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 4/218 (1%)

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           L P + T+N ++        I +   +   M     +PD+IT++ +I+   K        
Sbjct: 6   LQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMAL 65

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           Q+ K +     KP +  +N++I +  K RL  +A   F +M      P   TY  I  ++
Sbjct: 66  QLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSI--LH 123

Query: 237 GYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
           G+C+   V+ A  +F ++ +        T   +++  C   + +EA L+FE     G+ P
Sbjct: 124 GFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEP 183

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
           D  TY  L   Y   +  +  QKL   M++ G  PN R
Sbjct: 184 DVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVR 221



 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 13/102 (12%)

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           KLG    + T N +L   C      +A  LF+    MG  PD  TY  +     K     
Sbjct: 3   KLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTT 62

Query: 314 LVQKLLKRMEQNGIVPN-------------KRFFLEALETFS 342
           +  +LLK+ME+ G  PN              R   EA++ FS
Sbjct: 63  MALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFS 104



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 11/133 (8%)

Query: 217 MTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           M  +   P+ +T+  +++  G C    +  A ++FDE+ K+G +  V T + ++   C  
Sbjct: 1   MFKLGLQPTLVTFNTLLS--GLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKM 58

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           G  T A  L +     G  P+   Y  +  +  K  +          M + GI P+    
Sbjct: 59  GNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPD---- 114

Query: 335 LEALETFSSSLAG 347
              + T+SS L G
Sbjct: 115 ---VFTYSSILHG 124


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 153/332 (46%), Gaps = 7/332 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M K+R +  +   ++  I  + + G+   A     +M+  G  P+   YN L+  +   R
Sbjct: 191 MIKRRIH-TNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCK-R 248

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
             A  + KA  + ++M   + C PN VT+N L+    +  NV      F+E+ +  L P+
Sbjct: 249 GSAGKMYKAEAFMKEMLANKIC-PNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPN 307

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           I TYN +++    NG ++E   +  +M     KP+I+T+N LI+ + K++   +  +VF 
Sbjct: 308 IVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFD 367

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC- 239
            +   +  P + TFN+MI  Y K  +  +   +   M      P+  TY C+I   G C 
Sbjct: 368 DVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIA--GLCR 425

Query: 240 -DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             ++  A+E+ +E+   G    V T N +++  C N     A+ L     N+G+ P+  T
Sbjct: 426 KQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVT 485

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y  L   Y      +    +  RME+    PN
Sbjct: 486 YNTLMDGYCMEGKLKAALNVRTRMEKERKQPN 517



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 166/355 (46%), Gaps = 33/355 (9%)

Query: 7   YIADTGIYSKLIAVMGK--KGQTRLAMWLFSEMRNSGCRPDPS--VYNALITAH-----L 57
           ++A++  YSK+ + +    K +      +F  +   G RP  +  + + L+ A+     L
Sbjct: 87  FLANSKRYSKVRSFLDSFVKNEKHTVSSVFHSLLLDGGRPGATALIIDMLVLAYVKNLEL 146

Query: 58  HTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
           H   +A   AK  G+          K ++ + N LL A  +   +  V  ++KE+ +  +
Sbjct: 147 HCAYEAFTRAKDYGF----------KLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRI 196

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM-- 175
             ++ T+N  ++   + G + + E  +  MK+    P+++T+N L+D Y KR +  KM  
Sbjct: 197 HTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYK 256

Query: 176 -EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
            E   K ++ +K  P   TFN++I  + K      A+  F++M      P+ +TY  +I 
Sbjct: 257 AEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLIN 316

Query: 235 MYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV 292
             G C+N  +  A +++D++  LG    + T NA++  +C   +  EA  +F++     +
Sbjct: 317 --GLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQEL 374

Query: 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
            P+  T+  +  AY K  M E    L   M   GI+PN       + T++  +AG
Sbjct: 375 VPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPN-------VSTYNCLIAG 422



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 139/292 (47%), Gaps = 11/292 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI    K      A   F EM+  G +P+   YN+LI    +       L +A+  +
Sbjct: 276 FNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNN----GKLEEAIDLW 331

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM G+   KPNIVTYN L+    + + + +   +F ++ +  L P++ T+N ++DAY K
Sbjct: 332 DKMVGL-GLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCK 390

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            GM++E  S+ S M      P++ T+N LI    ++Q     +++   + +   K  + T
Sbjct: 391 EGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVT 450

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDE 251
           +N +I    K      AE +  +M  +   P+ +TY  +  M GYC    +  A  +   
Sbjct: 451 YNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTL--MDGYCMEGKLKAALNVRTR 508

Query: 252 LSKLGKDMKVSTLNAMLEAYC-MNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           + K  K   V T N +++ YC +N L     LL E     G+ P+ +TY ++
Sbjct: 509 MEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEK-GLNPNRTTYDIV 559



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 5/141 (3%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D   Y+ LI  + K  ++R A  L +EM N G +P+   YN L+  +     K KA   
Sbjct: 446 GDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYC-MEGKLKA--- 501

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL    +M+  ER +PN+VTYN+L++   +   ++  N L  E+ E  L P+  TY+ V 
Sbjct: 502 ALNVRTRMEK-ERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIVR 560

Query: 129 DAYGKNGMIKEMESVLSRMKS 149
               + G   ++E  L  + S
Sbjct: 561 LEMLEKGFSPDIEGHLYNISS 581


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 157/354 (44%), Gaps = 40/354 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G+   A+ L   +     +P+  +YN +I        KAK +  A   +
Sbjct: 169 YGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIID----NMCKAKLVNDAFDLY 224

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M     C P++ TYN L+   +    ++    LF ++ +  + P++YT+N ++D + K
Sbjct: 225 SQMVAKRIC-PDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCK 283

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + + + VL+ M  +  KPD++T+N L+D Y      +K + +F S+        +  
Sbjct: 284 EGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQI 343

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + +M+  + K ++  +A  +F++M   K  P+ +TY  +I        +  A ++ DE+ 
Sbjct: 344 YTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMH 403

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G+   + T +++L+A C N    +A  L  N  + G+ PD  TY +L K   ++   E
Sbjct: 404 DRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLE 463

Query: 314 LVQK-----------------------------------LLKRMEQNGIVPNKR 332
             Q                                    LL +ME NG +PN +
Sbjct: 464 DAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAK 517



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 134/329 (40%), Gaps = 19/329 (5%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA-----HLHTRDKA 63
           +D   ++ LI    + G   L+  +F+++   G  P    +N LI       H+H     
Sbjct: 94  SDFFTFNILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIH----- 148

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
               +AL +  K+   +    + V+Y  L+    +   +     L K +   ++ P+   
Sbjct: 149 ----QALHFHDKVVA-QGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVM 203

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++D   K  ++ +   + S+M + +  PD+ T+N LI  +      +    +F  + 
Sbjct: 204 YNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMK 263

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DN 241
                P + TFN ++  + K      A+ V   M      P  +TY  +  M GYC  + 
Sbjct: 264 KENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSL--MDGYCSINK 321

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           V++A++IFD ++  G    V     M+  +C   +  EA  LFE      + P+  TY  
Sbjct: 322 VNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSS 381

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           L     K        KL+  M   G  PN
Sbjct: 382 LIDGLCKLGRIFYALKLVDEMHDRGQPPN 410



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 151/359 (42%), Gaps = 56/359 (15%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ +I  M K      A  L+S+M      PD   YNALI+           L  A+  
Sbjct: 203 MYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGF----SAVSKLNYAIDL 258

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F KMK  E   PN+ T+NIL+    +   V+    +   + +  + PD+ TYN +MD Y 
Sbjct: 259 FNKMKK-ENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYC 317

Query: 133 K------------------------------NG-----MIKEMESVLSRMKSNQCKPDII 157
                                          NG     M+ E  ++   M+  +  P+++
Sbjct: 318 SINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVV 377

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSL-----MHSK-EKPTLPTFNSMIINYGKARLQGKAE 211
           T++ LID         K+ ++F +L     MH + + P + T++S++    K     KA 
Sbjct: 378 TYSSLID------GLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAI 431

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLE 269
            +   +      P   TY  +I   G C +  +  A+ +F++L   G ++ V     M++
Sbjct: 432 ALLTNLKDQGIRPDMYTYTILIK--GLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQ 489

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
            +C  G   +A  L     + G  P++ TY+L+  +  + +  +  +KLL+ M   G++
Sbjct: 490 GFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLREMIVRGLL 548



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/280 (20%), Positives = 119/280 (42%), Gaps = 1/280 (0%)

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           KAK  + AL   Q+M+ +   + +  T+NIL+   +Q        ++F ++ +    P  
Sbjct: 73  KAKHHSTALSLHQQME-LNGIESDFFTFNILINCFSQLGLNSLSFSIFAKILKKGYHPTA 131

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            T+N ++      G I +      ++ +     D +++  LI+   K        Q+ K 
Sbjct: 132 ITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKR 191

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           +     +P    +N +I N  KA+L   A  ++ +M A +  P   TY  +I+ +     
Sbjct: 192 VDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSK 251

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           ++ A ++F+++ K   +  V T N +++ +C  G   +A ++        + PD  TY  
Sbjct: 252 LNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNS 311

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           L   Y   N     + +   M   G++ N + +   +  F
Sbjct: 312 LMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGF 351



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 91/181 (50%), Gaps = 9/181 (4%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL--HTRDK 62
           R  I +   YS LI  + K G+   A+ L  EM + G  P+   Y++++ A    H  DK
Sbjct: 370 RKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDK 429

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A AL   L    K +G+   +P++ TY IL++   Q+  ++    +F++L       D+Y
Sbjct: 430 AIALLTNL----KDQGI---RPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVY 482

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            Y  ++  +   G   +  ++LS+M+ N C P+  T+ L+I S  ++   D  E++ + +
Sbjct: 483 AYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLREM 542

Query: 183 M 183
           +
Sbjct: 543 I 543



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 96/212 (45%), Gaps = 5/212 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           IA+  IY+ ++    K      A+ LF EMR     P+   Y++LI        K   + 
Sbjct: 338 IANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLC----KLGRIF 393

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            AL    +M    +  PNIVTY+ +L A  +  +VD+  AL   L +  + PD+YTY  +
Sbjct: 394 YALKLVDEMHDRGQ-PPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTIL 452

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +    ++G +++ ++V   +       D+  + ++I  +  +  FDK   +   +  +  
Sbjct: 453 IKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGC 512

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
            P   T+  +I++  +      AE + ++M  
Sbjct: 513 IPNAKTYELVILSLFEKDENDTAEKLLREMIV 544



 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 96/235 (40%), Gaps = 10/235 (4%)

Query: 103 DQVNALFKELHESIL----APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
           D+ N L    +  +L     P  + +N ++ +  K        S+  +M+ N  + D  T
Sbjct: 39  DEENNLISSFNHLLLHKNPTPPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFT 98

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           FN+LI+ + +         +F  ++     PT  TFN++I          +A +   K+ 
Sbjct: 99  FNILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVV 158

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL-GKDMKVSTL--NAMLEAYCMNG 275
           A  +    ++Y  +I   G C  V R       L ++ GK ++ + +  N +++  C   
Sbjct: 159 AQGFHLDQVSYGTLIN--GLC-KVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAK 215

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           L  +A  L+       + PD  TY  L   ++  +       L  +M++  I PN
Sbjct: 216 LVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPN 270


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 156/354 (44%), Gaps = 44/354 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  ++ VM K GQT LAM L  +M     + D   Y+ +I        K  +L  A   F
Sbjct: 329 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLC----KHGSLDNAFNLF 384

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+ M+    NI+TYNIL+     A   D    L +++ +  + P++ T++ ++D++ K
Sbjct: 385 NEME-MKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK 443

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++E E +   M      PD IT+  LID + K    DK  Q+   ++     P + T
Sbjct: 444 EGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRT 503

Query: 194 FNSMIINYGKAR---------------------------LQGKAEY--------VFQKMT 218
           FN +I  Y KA                            +QG  E         +FQ+M 
Sbjct: 504 FNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMV 563

Query: 219 AMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           + K  P+ +TY+  I + G CDN    +A EIF+++ K   ++ +   N ++   C    
Sbjct: 564 SRKVPPNIVTYK--ILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASK 621

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +A  LF +    GV P   TY ++     K       + L ++ME++G  P+
Sbjct: 622 VDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPD 675



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 146/326 (44%), Gaps = 9/326 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  +T  +S LI  +  +G+   A+ L   M   G +PD    N L+     +  +A+A+
Sbjct: 252 YEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAM 311

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
                   KM     C+PN VTY  +L    ++        L +++ E  +  D   Y+ 
Sbjct: 312 L----LIDKMVEYG-CQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSI 366

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++D   K+G +    ++ + M+      +IIT+N+LI  +     +D   ++ + ++  K
Sbjct: 367 IIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRK 426

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSR 244
             P + TF+ +I ++ K     +AE + ++M      P  ITY  +I   G+C  +++ +
Sbjct: 427 INPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLID--GFCKENHLDK 484

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A ++ D +   G D  + T N ++  YC      +   LF      GV  D+ TY  L +
Sbjct: 485 ANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQ 544

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
            + +     + ++L + M    + PN
Sbjct: 545 GFCELGKLNVAKELFQEMVSRKVPPN 570



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 121/266 (45%), Gaps = 5/266 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R    DT  Y+ LI    K+     A  +   M + GC P+   +N LI  +     KA
Sbjct: 459 HRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYC----KA 514

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             +   L  F+KM  +     + VTYN L++   +   ++    LF+E+    + P+I T
Sbjct: 515 NRIDDGLELFRKMS-LRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVT 573

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++D    NG  ++   +  +++ ++ + DI  +N++I         D    +F SL 
Sbjct: 574 YKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLP 633

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
               KP + T+N MI    K     +AE +F+KM    + P   TY  +I  +    + +
Sbjct: 634 LKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDAT 693

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLE 269
           ++ ++ +EL + G  +  ST+  +++
Sbjct: 694 KSVKLIEELKRCGFSVDASTIKMVID 719



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 121/273 (44%), Gaps = 1/273 (0%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A+  F+ M    R  P ++ ++ L  A A+ +  D V AL K++    +A ++YT + ++
Sbjct: 170 AIDLFRDMI-HSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMI 228

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + + +   +    S + ++     +P+ ITF+ LI+         +  ++   ++    K
Sbjct: 229 NCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHK 288

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P L T N+++     +  + +A  +  KM      P+ +TY  ++ +       + A E+
Sbjct: 289 PDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMEL 348

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             ++ +    +     + +++  C +G    A  LF      G+T +  TY +L   +  
Sbjct: 349 LRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCN 408

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           A   +   KLL+ M +  I PN   F   +++F
Sbjct: 409 AGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSF 441



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/318 (20%), Positives = 135/318 (42%), Gaps = 17/318 (5%)

Query: 30  AMWLFSEMRNSGCRPDPSV--YNALITAHLHTR--DKAKALAKALGYFQKMKGMERCKPN 85
           A+ LF +M +S  RP P+V  ++ L +A   T+  D   AL K +    ++KG+     N
Sbjct: 170 AIDLFRDMIHS--RPLPTVIDFSRLFSAIAKTKQYDLVLALCKQM----ELKGIAH---N 220

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           + T +I++    + R +    +   ++ +    P+  T++ +++     G + E   ++ 
Sbjct: 221 LYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVD 280

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
           RM     KPD+IT N L++         +   +   ++    +P   T+  ++    K+ 
Sbjct: 281 RMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSG 340

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVST 263
               A  + +KM         + Y  II   G C +  +  A  +F+E+   G    + T
Sbjct: 341 QTALAMELLRKMEERNIKLDAVKYSIIID--GLCKHGSLDNAFNLFNEMEMKGITTNIIT 398

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N ++  +C  G   +   L  +     + P+  T+ +L  ++ K       ++L K M 
Sbjct: 399 YNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMI 458

Query: 324 QNGIVPNKRFFLEALETF 341
             GI P+   +   ++ F
Sbjct: 459 HRGIAPDTITYTSLIDGF 476


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 162/356 (45%), Gaps = 44/356 (12%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ +I  M K      A  LFSEM + G  PD   Y+ALI+           L  A+  
Sbjct: 227 MYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFC----ILGKLNDAIDL 282

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F KM  +E  KP++ T+NIL+ A  +   + +   +F  + +  + P+  TYN +MD Y 
Sbjct: 283 FNKMI-LENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYC 341

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL---------- 182
               + + +S+ + M      PDI +++++I+ + K + FD+   +FK +          
Sbjct: 342 LVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVV 401

Query: 183 ------------------------MHSKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
                                   MH +   PT+ T+NS++    K     KA  +  K+
Sbjct: 402 TYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKL 461

Query: 218 TAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
                 P+  TY  +I   G C +  +  AR++F+ L   G ++ V T   M++ +C+ G
Sbjct: 462 KDKGIQPNMYTYSILIK--GLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEG 519

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           L  EA  L     + G  PD+ TY+++  +  K +  ++ +KLL+ M   G+ P +
Sbjct: 520 LFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRPRQ 575



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 148/324 (45%), Gaps = 5/324 (1%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y+ DT  ++ LI  +  KGQ + A     ++   G   D   Y  LI    H   K    
Sbjct: 151 YVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLI----HGLCKVGET 206

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             AL   Q++ G    +PN+V YN ++ +  + + V++   LF E+    ++PD+ TY+ 
Sbjct: 207 RAALDLLQRVDG-NLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSA 265

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  +   G + +   + ++M     KPD+ TFN+L++++ K     + + VF  +M   
Sbjct: 266 LISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQG 325

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            KP   T+NS++  Y   +   KA+ +F  M      P   +Y  +I  +        A 
Sbjct: 326 IKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAM 385

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +F E+ +      V T +++++    +G  + A  L +  H+ GV P   TY  +  A 
Sbjct: 386 NLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDAL 445

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K +  +    LL +++  GI PN
Sbjct: 446 CKIHQVDKAIALLTKLKDKGIQPN 469



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 157/316 (49%), Gaps = 11/316 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G+TR A+ L   +  +  +P+  +YN +I +      K K + +A   F
Sbjct: 193 YGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMC----KVKLVNEAFDLF 248

Query: 74  QKM--KGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
            +M  KG+    P++VTY+ L+   C   +  D ++   K + E+I  PD+YT+N +++A
Sbjct: 249 SEMISKGIS---PDVVTYSALISGFCILGKLNDAIDLFNKMILENI-KPDVYTFNILVNA 304

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K+G +KE ++V   M     KP+ +T+N L+D Y   +  +K + +F ++      P 
Sbjct: 305 FCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPD 364

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           + +++ MI  + K +   +A  +F++M      P  +TY  +I        +S A ++ D
Sbjct: 365 IQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVD 424

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           ++   G    + T N++L+A C      +A  L     + G+ P+  TY +L K   ++ 
Sbjct: 425 QMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSG 484

Query: 311 MKELVQKLLKRMEQNG 326
             E  +K+ + +   G
Sbjct: 485 KLEDARKVFEGLLVKG 500



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 139/329 (42%), Gaps = 17/329 (5%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL-----AKALG 71
           LI    + G    A  +F+++   G  PD   +  LI          +A        ALG
Sbjct: 126 LINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALG 185

Query: 72  Y-FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           + F +           ++Y  L+    +         L + +  +++ P++  YN ++D+
Sbjct: 186 FHFDQ-----------ISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDS 234

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             K  ++ E   + S M S    PD++T++ LI  +      +    +F  ++    KP 
Sbjct: 235 MCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPD 294

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           + TFN ++  + K     + + VF  M      P+F+TY  ++  Y     V++A+ IF+
Sbjct: 295 VYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFN 354

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            +++ G +  + + + M+  +C      EA  LF+  H   + PD  TY  L    +K+ 
Sbjct: 355 TMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSG 414

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALE 339
                 +L+ +M   G+ P  R +   L+
Sbjct: 415 RISYALQLVDQMHDRGVPPTIRTYNSILD 443



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 146/343 (42%), Gaps = 21/343 (6%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++K++  + K       ++L  +M   G +P+    N LI        +   +  A   F
Sbjct: 88  FNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFC----QLGLIPFAFSVF 143

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP----DIYTYNGVMD 129
            K+  M    P+ +T+  L++       + Q   LF   H+ ++A     D  +Y  ++ 
Sbjct: 144 AKILKMGYV-PDTITFTTLIKGLCLKGQIQQA-FLF---HDKVVALGFHFDQISYGTLIH 198

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K G  +    +L R+  N  +P+++ +N +IDS  K +  ++   +F  ++     P
Sbjct: 199 GLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISP 258

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T++++I  +        A  +F KM      P   T+  ++  +     +   + +F
Sbjct: 259 DVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVF 318

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D + K G      T N++++ YC+     +A  +F      GV PD  +Y ++   + K 
Sbjct: 319 DMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKI 378

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG-SQSG 351
              +    L K M +  I+P+       + T+SS + G S+SG
Sbjct: 379 KKFDEAMNLFKEMHRKNIIPD-------VVTYSSLIDGLSKSG 414



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 98/230 (42%), Gaps = 12/230 (5%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           K N ++Y+          +VD   +LF  L      P  + +N ++ +  K+     +  
Sbjct: 47  KINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLY 106

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +  +M+    KP+++  N+LI+ + +         VF  ++     P   TF ++I    
Sbjct: 107 LSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLI---K 163

Query: 203 KARLQGKAEYVF---QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
              L+G+ +  F    K+ A+ +    I+Y  +I  +G C  V   R   D L ++  ++
Sbjct: 164 GLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLI--HGLC-KVGETRAALDLLQRVDGNL 220

Query: 260 ---KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
               V   N ++++ C   L  EA  LF    + G++PD  TY  L   +
Sbjct: 221 VQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGF 270



 Score = 45.4 bits (106), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 35/178 (19%), Positives = 70/178 (39%)

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           K + I+++    ++      D    +F  L+     P    FN ++ +  K++      Y
Sbjct: 47  KINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLY 106

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           + QKM      P+ +    +I  +     +  A  +F ++ K+G      T   +++  C
Sbjct: 107 LSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLC 166

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + G   +A L  +    +G   D  +Y  L     K         LL+R++ N + PN
Sbjct: 167 LKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPN 224



 Score = 45.4 bits (106), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 13/228 (5%)

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+     +  N  + +  S+ +R+      P    FN ++ S  K + +  +  + + +
Sbjct: 52  SYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKM 111

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--D 240
                KP L   N +I  + +  L   A  VF K+  M Y P  IT+  +I   G C   
Sbjct: 112 EFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIK--GLCLKG 169

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA-DLLFENSHNMGVTPDSSTY 299
            + +A    D++  LG      +   ++   C  G    A DLL     N+ V P+   Y
Sbjct: 170 QIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNL-VQPNVVMY 228

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
             +  +  K  +      L   M   GI P+       + T+S+ ++G
Sbjct: 229 NTIIDSMCKVKLVNEAFDLFSEMISKGISPD-------VVTYSALISG 269


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 155/336 (46%), Gaps = 13/336 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+   I D  IY+ LI    +KG    AM L +EM   GC  D   YN +    LH   K
Sbjct: 392 KEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTI----LHGLCK 447

Query: 63  AKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            K L +A   F +M   ER   P+  T  IL+    +  N+     LFK++ E  +  D+
Sbjct: 448 RKMLGEADKLFNEMT--ERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDV 505

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TYN ++D +GK G I   + + + M S +  P  I+F++L+++   +    +  +V+  
Sbjct: 506 VTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDE 565

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC-- 239
           ++    KPT+   NSMI  Y ++      E   +KM +  + P  I+Y  +I  YG+   
Sbjct: 566 MISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLI--YGFVKE 623

Query: 240 DNVSRAREIFDELSKL--GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
           +N+S+A  +  ++ +   G    V T N++L  +C      EA+ +       GV PD S
Sbjct: 624 ENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRS 683

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
           TY  L   +   +      +    M Q G  P+ +F
Sbjct: 684 TYTSLINGFVSQDNLTEAFRFHDEMLQRGFSPDDKF 719



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 153/325 (47%), Gaps = 11/325 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D+  Y  L+    KKG       +FS+MR+    PD   ++++++  L TR  +  L KA
Sbjct: 329 DSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMS--LFTR--SGNLDKA 384

Query: 70  LGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           L YF  +K  G+    P+ V Y IL++   +   + +   L  E+ +   A D+ TYN +
Sbjct: 385 LMYFNSVKEAGL---IPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTI 441

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +    K  M+ E + + + M      PD  T  +LID + K        ++FK +   + 
Sbjct: 442 LHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRI 501

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           K  + T+N+++  +GK      A+ ++  M + +  P+ I++  ++       ++S A  
Sbjct: 502 KLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFR 561

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           ++DE+        V   N+M++ YC +G  ++ ++  E   + G  PD  +Y  L   + 
Sbjct: 562 VWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFV 621

Query: 308 KANMKELVQKLLKRME--QNGIVPN 330
           K         L+K+ME  Q G+VP+
Sbjct: 622 KEENMSKAFGLVKKMEEKQGGLVPD 646



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 143/327 (43%), Gaps = 9/327 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + + Y       + LI  + + G   LA  ++ E+  SG   +    N ++ A L    K
Sbjct: 182 RSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNA-LCKDGK 240

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            + +   L   Q+ KG+    P+IVTYN L+ A +    +++   L   +     +P +Y
Sbjct: 241 MEKVGTFLSEVQE-KGV---YPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVY 296

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN V++   K+G  +  + V + M  +   PD  T+  L+    K+    + E +F  +
Sbjct: 297 TYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDM 356

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN- 241
                 P L  F+SM+  + ++    KA   F  +      P  + Y  +I   GYC   
Sbjct: 357 RSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQ--GYCRKG 414

Query: 242 -VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            +S A  + +E+ + G  M V T N +L   C   +  EAD LF      G+ PDS T  
Sbjct: 415 MISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLT 474

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGI 327
           +L   + K    +   +L K+M++  I
Sbjct: 475 ILIDGHCKLGNLQNAMELFKKMKEKRI 501



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 142/340 (41%), Gaps = 55/340 (16%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           ++  + K G+        SE++  G  PD   YN LI+A+      ++ L +    F+ M
Sbjct: 231 MVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAY-----SSQGLMEEA--FELM 283

Query: 77  KGM--ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
             M  +   P + TYN ++    +    ++   +F E+  S L+PD  TY  ++    K 
Sbjct: 284 HAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKK 343

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP-- 192
           G   E E++ S M+S    PD++ F+ ++  + +    DK    F S+   KE   +P  
Sbjct: 344 GDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSV---KEAGLIPDN 400

Query: 193 ------------------------------------TFNSMIINYGKARLQGKAEYVFQK 216
                                               T+N+++    K ++ G+A+ +F +
Sbjct: 401 VIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNE 460

Query: 217 MTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           MT     P   +Y   I + G+C   N+  A E+F ++ +    + V T N +L+ +   
Sbjct: 461 MTERGLFPD--SYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKV 518

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKE 313
           G    A  ++ +  +  + P   ++ +L  A  +K ++ E
Sbjct: 519 GDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSE 558



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 114/257 (44%), Gaps = 16/257 (6%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C  N   +++L+R   QAR + +    F  L        I   N ++ +  + G ++   
Sbjct: 151 CGSNDSVFDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAW 210

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK---PTLPTFNSMI 198
            +   +  +    ++ T N+++++  K     KME+V   L   +EK   P + T+N++I
Sbjct: 211 RIYQEISRSGVGVNVYTLNIMVNALCKD---GKMEKVGTFLSEVQEKGVYPDIVTYNTLI 267

Query: 199 INYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDN--VSRAREIFDELS 253
             Y     QG  E  F+ M AM    ++P   TY  +I   G C +    RA+E+F E+ 
Sbjct: 268 SAYSS---QGLMEEAFELMHAMPSKGFSPGVYTYNTVIN--GLCKHGKYERAKEVFAEML 322

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G     +T  ++L   C  G   E + +F +  +  V PD   +  +   +T++   +
Sbjct: 323 RSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLD 382

Query: 314 LVQKLLKRMEQNGIVPN 330
                   +++ G++P+
Sbjct: 383 KALMYFNSVKEAGLIPD 399


>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 162/357 (45%), Gaps = 41/357 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  YS LI+  GK  +   A  LF EM+ +G  P   +Y  ++  +     K   +  A
Sbjct: 229 DTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYF----KLNKVEAA 284

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L   ++MKG + C P + TY  L++   +   VD   +LF  + +    PD+   N +++
Sbjct: 285 LRLVEEMKG-KGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLIN 343

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA--------FDKME----- 176
             G+ G +++   +  +M S QC P+++T+N +I +  + +A        F+KM+     
Sbjct: 344 ILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIA 403

Query: 177 -----------------QVFKSL-----MHSKEKPTLP-TFNSMIINYGKARLQGKAEYV 213
                            +V K+L     M  K  P  P  + S+I + G+A+    A  +
Sbjct: 404 PSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANEL 463

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           FQ++       S   Y  +I  +G C  +S A ++F E+ KLG    V T NA++     
Sbjct: 464 FQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIR 523

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            G+  EA  L  N    G TPD  ++ ++     K    +   ++  +M+++ I+P+
Sbjct: 524 AGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPD 580



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 147/314 (46%), Gaps = 6/314 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y++LI  +GK G+   A  LF  M   GC+PD  + N LI    +   +A  L  AL  F
Sbjct: 303 YTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLI----NILGRAGRLEDALKLF 358

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL-FKELHESILAPDIYTYNGVMDAYG 132
            KM  ++ C PN+VTYN +++A  +++      AL F+++  + +AP  +TY  ++D + 
Sbjct: 359 GKMDSLQ-CAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFC 417

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K   +++   +L  M      P    +  LIDS G+ + ++   ++F+ L  +  + +  
Sbjct: 418 KTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSAR 477

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            +  MI ++G       A  +F +M  +  +P   TY  +++       +  A  +   +
Sbjct: 478 VYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNM 537

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            + G    + + N +L      G P  A  +F       + PD+ +Y  +    ++A M 
Sbjct: 538 RENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMF 597

Query: 313 ELVQKLLKRMEQNG 326
           E+  KL++ M+  G
Sbjct: 598 EMAAKLMREMKLKG 611



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 132/316 (41%), Gaps = 38/316 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +S+++ ++GK      A+ +F +++   C P  +VYN LI   +H     K        +
Sbjct: 162 WSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHE----LY 217

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++     C P+ +TY+ L+ A  +    D    LF E+ E+ L P    Y  ++  Y K
Sbjct: 218 NEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFK 277

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              ++    ++  MK   C P + T+  LI   GK    D    +F +++    KP +  
Sbjct: 278 LNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVL 337

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            N++I   G+A     A  +F KM +++  P+ +TY  +I            + IF+  +
Sbjct: 338 INNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVI------------KAIFESKA 385

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
                                   +EA L FE     G+ P S TY +L   + K N  E
Sbjct: 386 P----------------------ASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVE 423

Query: 314 LVQKLLKRMEQNGIVP 329
               LL+ M++ G  P
Sbjct: 424 KALLLLEEMDEKGFPP 439



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 106/228 (46%), Gaps = 7/228 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    K  +   A+ L  EM   G  P P+ Y +LI     +  +AK    A   F
Sbjct: 409 YAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLI----DSLGRAKRYEAANELF 464

Query: 74  QKMKGMERC-KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           Q++K  E C + +   Y ++++       +     LF E+ +   +PD+YTYN +M    
Sbjct: 465 QELK--ENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMI 522

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + GMI E  S++  M+ N C PDI + N++++   K     +  ++F  +  S+  P   
Sbjct: 523 RAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAV 582

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           ++N+++    +A +   A  + ++M    +    ITY  I+   G  D
Sbjct: 583 SYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDSITYSSILEAVGKVD 630



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 131/302 (43%), Gaps = 51/302 (16%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  + + LI ++G+ G+   A+ LF +M +  C P+   YN +I A   +  KA A   A
Sbjct: 334 DVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFES--KAPASEAA 391

Query: 70  LGYFQKMK--GMER------------CKPNIV--------------------TYNILLRA 95
           L +F+KMK  G+              CK N V                     Y  L+ +
Sbjct: 392 L-WFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDS 450

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
             +A+  +  N LF+EL E+        Y  ++  +G  G + +   +   MK   C PD
Sbjct: 451 LGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPD 510

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
           + T+N L+    +    D+   + +++  +   P + + N ++    K     +A  +F 
Sbjct: 511 VYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFT 570

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS-------TLNAML 268
           KM   +  P  ++Y  I++       +SRA  +F+  +KL ++MK+        T +++L
Sbjct: 571 KMKESEIMPDAVSYNTILSC------LSRA-GMFEMAAKLMREMKLKGFEYDSITYSSIL 623

Query: 269 EA 270
           EA
Sbjct: 624 EA 625



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 99/244 (40%), Gaps = 1/244 (0%)

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           TY  L+R   ++  VD++    +++  S  +     ++ ++   GK  M+ +  SV  ++
Sbjct: 126 TYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVFYQI 185

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARL 206
           K  +C P    +N LI         +K+ +++  +       P   T++++I  +GK   
Sbjct: 186 KGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGKLER 245

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
              A  +F +M      P+   Y  I+ MY   + V  A  + +E+   G    V T   
Sbjct: 246 YDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTE 305

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           +++     G   +A  LF N    G  PD      L     +A   E   KL  +M+   
Sbjct: 306 LIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQ 365

Query: 327 IVPN 330
             PN
Sbjct: 366 CAPN 369


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 155/360 (43%), Gaps = 48/360 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  LI  + K G T  A+ L   M    C+P+   YN +I +      K + + +A
Sbjct: 165 DVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLC----KDRQVTEA 220

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F +M  KG+    P+I TYN L+ A         V  L  E+ +S + PD+ ++N V
Sbjct: 221 FNLFSEMVTKGI---SPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTV 277

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +DA  K G + E   V+ +M     +P+++T+  L+D +      D+  +VF +++    
Sbjct: 278 VDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGC 337

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P + ++N++I  Y K +   KA Y+F +M   +  P  +TY  +I    + + +  A  
Sbjct: 338 MPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIA 397

Query: 248 IFDEL-------------------------------------SKLGKDMKVSTLNAMLEA 270
           +F E+                                     S L  D++V+  N  ++ 
Sbjct: 398 LFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVN--NIAIDG 455

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            C  G    A  LF N  + G+ PD  TY ++     +  + +   KL + M++NG   N
Sbjct: 456 MCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLN 515



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 130/304 (42%), Gaps = 9/304 (2%)

Query: 29  LAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88
            A  + +++   G +PD + +  LI   ++   K   + +AL  F KM G E  +P++VT
Sbjct: 114 FAFSVLAKILKLGHQPDTATFTTLIRG-IYVEGK---IGEALHLFDKMIG-EGFRPDVVT 168

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y  L+    +  N      L   + +    P+++ YN ++D+  K+  + E  ++ S M 
Sbjct: 169 YGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMV 228

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           +    PDI T+N LI +      +  +  +   ++ SK  P + +FN+++    K     
Sbjct: 229 TKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVT 288

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNA 266
           +A  V  KM      P+ +TY  +  M G+C    +  A ++FD +   G    V + N 
Sbjct: 289 EAHDVVDKMIQRGVEPNVVTYTAL--MDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNT 346

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           ++  YC      +A  LF       + PD+ TY  L          +    L   M    
Sbjct: 347 LINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACS 406

Query: 327 IVPN 330
            +PN
Sbjct: 407 QIPN 410



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 133/348 (38%), Gaps = 40/348 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--------HLHT------ 59
           Y+ +I  + K  Q   A  LFSEM   G  PD   YN+LI A        H+ T      
Sbjct: 204 YNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMV 263

Query: 60  -----------RDKAKALAK------ALGYFQKM--KGMERCKPNIVTYNILLRACAQAR 100
                           AL K      A     KM  +G+E   PN+VTY  L+       
Sbjct: 264 DSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVE---PNVVTYTALMDGHCLLS 320

Query: 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
            +D+   +F  +      P++ +YN +++ Y K   I +   +   M   +  PD +T++
Sbjct: 321 EMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYS 380

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
            LI      +       +F  ++   + P L T+  ++    K R   +A  + + +   
Sbjct: 381 TLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGS 440

Query: 221 KYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
              P        I + G C    +  AR++F  LS  G    V T + M+   C  GL  
Sbjct: 441 NLDPDIQVNN--IAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLD 498

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           EA  LF      G T +   Y  + + + + N      +LL+ M   G
Sbjct: 499 EASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARG 546



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 108/247 (43%), Gaps = 5/247 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ +F  M   GC P+   YN LI  +     K + + KA+  F +M   E   P+ VTY
Sbjct: 325 AVKVFDTMVCKGCMPNVISYNTLINGYC----KIQRIDKAMYLFGEMCRQELI-PDTVTY 379

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           + L+        +    ALF E+      P++ TY  ++D   KN  + E  ++L  ++ 
Sbjct: 380 STLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEG 439

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
           +   PDI   N+ ID   +    +    +F +L     +P + T++ MI    +  L  +
Sbjct: 440 SNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDE 499

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  +F++M     T +   Y  I   +   +  SRA ++  E+   G     ST+   ++
Sbjct: 500 ASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVK 559

Query: 270 AYCMNGL 276
               +GL
Sbjct: 560 MLSDDGL 566



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 122/302 (40%), Gaps = 9/302 (2%)

Query: 37  MRNSGCRPDPSVYNALITAHL---HTRDKAKALA-----KALGYFQKMKGMERCKPNIVT 88
           MR    RP  +   +L+   L   H R  +K+L       A+  F +M  M+   P+ V 
Sbjct: 5   MRRPSSRPSGTQMLSLLAHFLSLSHNRFHSKSLHFNTIDGAISSFNRMLRMQP-PPSTVD 63

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           +N LL + A+ ++   + +L  ++    + P+IYT + +++++     +    SVL+++ 
Sbjct: 64  FNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKIL 123

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
               +PD  TF  LI          +   +F  ++    +P + T+ ++I    K     
Sbjct: 124 KLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTS 183

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A  +   M      P+   Y  II        V+ A  +F E+   G    + T N+++
Sbjct: 184 AAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLI 243

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
            A C          L     +  + PD  ++  +  A  K         ++ +M Q G+ 
Sbjct: 244 HALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVE 303

Query: 329 PN 330
           PN
Sbjct: 304 PN 305



 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 13/156 (8%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERCKPNIV 87
           AM L   +  S   PD  V N  I        +A  L  A   F  +  KG++   P++ 
Sbjct: 430 AMALLKAIEGSNLDPDIQVNNIAIDGMC----RAGELEAARDLFSNLSSKGLQ---PDVW 482

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           TY+I++    +   +D+ + LF+E+ E+    +   YN +   + +N        +L  M
Sbjct: 483 TYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEM 542

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
            +     D  T  L +    K  + D ++Q  K ++
Sbjct: 543 VARGFSADASTMTLFV----KMLSDDGLDQSLKQIL 574


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 152/327 (46%), Gaps = 13/327 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLHTRDKAKALA 67
           +T  Y+ +I    K G    A  L +EM+     PD   Y+ LI A   L   +  + L 
Sbjct: 212 NTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTL- 270

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
                F +M  +    PN+ T+N ++    +   V+    + + + E  + PD+ TYN +
Sbjct: 271 -----FLEMIHLN-IYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMI 324

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D YG  G +     +   M +   +PDII++N+LI+ Y +++  D+  QV + +     
Sbjct: 325 IDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGL 384

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRA 245
           KP++ T N ++    +      A+  F +M +  + P   T+ C + + GY  N  V  A
Sbjct: 385 KPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTH-CTL-LGGYFKNGLVEEA 442

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
              F +L +  +D  +    A+++  C NG   +A   FE    +G+ PD  TY  +   
Sbjct: 443 MSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISG 502

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKR 332
           Y +  + +  + +L++ME NG + + R
Sbjct: 503 YCQEGLLDEAKDMLRKMEDNGCLADNR 529



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 148/368 (40%), Gaps = 75/368 (20%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y  ++  + KKG T+ A  L   M     +P+   Y  +I A      K   L  A   
Sbjct: 180 MYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFC----KDGMLDGATSL 235

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +MK  +   P+I TY+ L+ A  +    + V  LF E+    + P++ T+N V+D   
Sbjct: 236 LNEMK-QKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLC 294

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G +++ E ++  M      PD+IT+N++ID YG R   D+  ++F S+++   +P + 
Sbjct: 295 KEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDII 354

Query: 193 TFNSMIINYGKAR---------------------------LQG--------KAEYVFQKM 217
           ++N +I  Y + +                           L G         A+  F +M
Sbjct: 355 SYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEM 414

Query: 218 TAMKYTPSFITYECIITMY---------------------------------GYCDN--V 242
            +  + P   T+  ++  Y                                 G C N  +
Sbjct: 415 LSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKL 474

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A   F++L  +G    V T  AM+  YC  GL  EA  +     + G   D+ TY ++
Sbjct: 475 DKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVI 534

Query: 303 YKAYTKAN 310
            + + ++N
Sbjct: 535 VRGFLRSN 542



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 115/262 (43%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A+  F+K+     C+PN V Y  ++    +  +  +   L + + +    P+  TY  V+
Sbjct: 161 AVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVI 220

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           DA+ K+GM+    S+L+ MK     PDI T++ LID+  K   ++ +  +F  ++H    
Sbjct: 221 DAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIY 280

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P + TFNS+I    K      AE + + M      P  ITY  II  YG    V RAREI
Sbjct: 281 PNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREI 340

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           FD +     +  + + N ++  Y       EA  +       G+ P   T  +L     +
Sbjct: 341 FDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFE 400

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
               +  Q     M   G +P+
Sbjct: 401 LGRTKSAQNFFDEMLSAGHIPD 422



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 109/249 (43%), Gaps = 5/249 (2%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKEL-HESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           N VT+  L+R       V     LFK+L  E+I  P+   Y  VM+   K G  ++   +
Sbjct: 141 NEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDL 200

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L  M+    KP+  T+ ++ID++ K    D    +   +      P + T++++I    K
Sbjct: 201 LRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCK 260

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKV 261
                    +F +M  +   P+  T+  +I   G C    V  A EI   + + G D  V
Sbjct: 261 LSQWENVRTLFLEMIHLNIYPNVCTFNSVID--GLCKEGKVEDAEEIMRYMIEKGVDPDV 318

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T N +++ Y + G    A  +F++  N  + PD  +Y +L   Y +    +   ++ + 
Sbjct: 319 ITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCRE 378

Query: 322 MEQNGIVPN 330
           + Q G+ P+
Sbjct: 379 ISQKGLKPS 387



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/306 (18%), Positives = 115/306 (37%), Gaps = 41/306 (13%)

Query: 63  AKALAKALGYFQKMKGMERCKP--NIVTYNILLRACAQARNVDQVNALFKELHE------ 114
            K L  A   F++M    R KP  ++ +++ LL+A    ++   V +LF+E+H+      
Sbjct: 50  VKCLDDAFSLFRQMV---RTKPLPSVASFSKLLKAMVHMKHYSSVVSLFREIHKLRIPVH 106

Query: 115 ---------------------SILAPDI--------YTYNGVMDAYGKNGMIKEMESVLS 145
                                S+LA            T+  ++        +K+   +  
Sbjct: 107 EFILSIVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFK 166

Query: 146 RM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
           ++ + N C+P+ + +  +++   K+    K   + + +     KP   T+  +I  + K 
Sbjct: 167 KLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKD 226

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
            +   A  +  +M      P   TY  +I            R +F E+  L     V T 
Sbjct: 227 GMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTF 286

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N++++  C  G   +A+ +       GV PD  TY ++   Y      +  +++   M  
Sbjct: 287 NSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMIN 346

Query: 325 NGIVPN 330
             I P+
Sbjct: 347 KSIEPD 352



 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 68/158 (43%), Gaps = 5/158 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           +I D   +  L+    K G    AM  F ++       +  +Y A+I        K   L
Sbjct: 419 HIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLC----KNGKL 474

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            KA   F+K+  +    P+++TY  ++    Q   +D+   + +++ ++    D  TYN 
Sbjct: 475 DKAHATFEKLP-LIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNV 533

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164
           ++  + ++  + EM++ L  +       +  T  LL+D
Sbjct: 534 IVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMD 571


>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74750-like [Glycine max]
          Length = 873

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 157/310 (50%), Gaps = 7/310 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q  +  D   Y+ ++ ++G+  +      L  +M   GC+P+   YN LI    H  
Sbjct: 367 LRRQPGFRHDGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLI----HCY 422

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
             A  L +AL  F +M+ +  C+P+ VTY  L+   A+A  +D   +++K + E+ L+PD
Sbjct: 423 GCANYLKEALNVFNEMQEVG-CEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPD 481

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            +TY+ +++  GK G +     +   M  + C P+++T+N++I    K + ++   +++ 
Sbjct: 482 TFTYSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMALKLYH 541

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            + ++  +P   T++ ++   G      +AE VF +M    + P    Y  ++ ++G   
Sbjct: 542 DMQNAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQKNWVPDEPVYGLLVDLWGKAG 601

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYC-MNGLPTEADLLFENSHNMGVTPDSSTY 299
           NV +A E +  +   G    V T N++L A+  ++ LP +A  L ++   +G+ P   TY
Sbjct: 602 NVEKASEWYQAMLNAGLLPNVPTCNSLLSAFLRLHRLP-DAYNLVQSMVALGLRPSLQTY 660

Query: 300 KLLYKAYTKA 309
            LL    T+A
Sbjct: 661 TLLLSCCTEA 670



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 120/262 (45%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           ALG+F  ++     + +  TY  ++    +AR  D ++ L +++ +    P++ TYN ++
Sbjct: 360 ALGFFDWLRRQPGFRHDGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLI 419

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
             YG    +KE  +V + M+   C+PD +T+  LID + K    D    ++K +  +   
Sbjct: 420 HCYGCANYLKEALNVFNEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLS 479

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   T++ +I   GKA     A ++F +M      P+ +TY  +I +     N   A ++
Sbjct: 480 PDTFTYSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMALKL 539

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           + ++   G      T + ++EA    G   EA+ +F         PD   Y LL   + K
Sbjct: 540 YHDMQNAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQKNWVPDEPVYGLLVDLWGK 599

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
           A   E   +  + M   G++PN
Sbjct: 600 AGNVEKASEWYQAMLNAGLLPN 621



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 107/250 (42%), Gaps = 11/250 (4%)

Query: 100 RNVDQVNALFKELHESILAPD-IYTYNGVMDAYGKNGMIKEMESVLSRM-------KSNQ 151
           R V+ V+ + ++L     A   +Y  N  MDAY  N ++K+++     +       +   
Sbjct: 313 RIVEVVSDILRQLRWGPTAEKALYNLNFSMDAYQANQILKQLQDPSVALGFFDWLRRQPG 372

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
            + D  T+  ++   G+ + FD + ++ + ++    +P + T+N +I  YG A    +A 
Sbjct: 373 FRHDGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLKEAL 432

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
            VF +M  +   P  +TY  +I ++     +  A  ++  + + G      T + ++   
Sbjct: 433 NVFNEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCL 492

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
              G    A  LF      G  P+  TY ++     KA   E+  KL   M+  G  P+K
Sbjct: 493 GKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMALKLYHDMQNAGFQPDK 552

Query: 332 ---RFFLEAL 338
                 +EAL
Sbjct: 553 VTYSIVMEAL 562



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 8/135 (5%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ++ W + D  +Y  L+ + GK G    A   +  M N+G  P+    N+L++A L   
Sbjct: 578 MQQKNW-VPDEPVYGLLVDLWGKAGNVEKASEWYQAMLNAGLLPNVPTCNSLLSAFL--- 633

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +   L  A    Q M  +   +P++ TY +LL  C +A+    +   F EL  ++    
Sbjct: 634 -RLHRLPDAYNLVQSMVALG-LRPSLQTYTLLLSCCTEAQPAHDM-GFFCEL-MAVTGHP 689

Query: 121 IYTYNGVMDAYGKNG 135
            + +   M A G +G
Sbjct: 690 AHAFLLSMPAAGPDG 704


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 146/328 (44%), Gaps = 9/328 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ LI    K G   LA  LF +M   G  P+P  Y+ L+        + +        
Sbjct: 195 IYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREG------- 247

Query: 73  FQKMKGMERCK--PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           FQ  + M+R    PN   YN L+        VD+   +F E+ E  +A  + TYN ++  
Sbjct: 248 FQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGG 307

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             +     E   ++ ++      P+I+T+N+LI+ +   +  D   ++F  L  S   PT
Sbjct: 308 LCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPT 367

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           L T+N++I  Y K      A  + ++M      PS +TY  +I  +   ++  +A E+  
Sbjct: 368 LVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHS 427

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            + K G    V T + +L   C++G   EA  LF++   M + P+S  Y  +   Y K  
Sbjct: 428 LMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEG 487

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEAL 338
                 +LL  M Q+G+VPN   F   +
Sbjct: 488 SSYRALRLLNEMVQSGMVPNVASFCSTI 515



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 137/305 (44%), Gaps = 9/305 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+   + +   Y+ LI+     G    A  +F+EMR  G       YN LI        +
Sbjct: 255 KRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGG----LCR 310

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   +A+    K+  +    PNIVTYNIL+      R +D    LF +L  S L+P + 
Sbjct: 311 GKKFGEAVKLVHKVNKVGL-SPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLV 369

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++  Y K   +     ++  M+     P  +T+ +LID++ +    +K  ++   +
Sbjct: 370 TYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLM 429

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
             S   P + T++ ++          +A  +F+ +  M   P+ + Y  +I  +GYC   
Sbjct: 430 EKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMI--HGYCKEG 487

Query: 243 S--RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           S  RA  + +E+ + G    V++  + +   C +    EA+LL     N G+ P  S YK
Sbjct: 488 SSYRALRLLNEMVQSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYK 547

Query: 301 LLYKA 305
           +++K 
Sbjct: 548 MVHKV 552



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 151/333 (45%), Gaps = 24/333 (7%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           ++  +  ++ L+ ++ +      A W+F+E++ S    D   +  +I          K  
Sbjct: 120 HVPLSNTFNNLLCLLIRSNYFDKAWWIFNELK-SKVVLDAYSFGIMI----------KGC 168

Query: 67  AKALGYFQK----MKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +A GYF K    +  +E     PN+V Y  L+  C +  NV     LF +++   L P+
Sbjct: 169 CEA-GYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPN 227

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            +TY+ +M+ + K G+ +E   +   MK +   P+   +N LI  Y      DK  +VF 
Sbjct: 228 PHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFA 287

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +        + T+N +I    + +  G+A  +  K+  +  +P+ +TY  +I   G+CD
Sbjct: 288 EMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILIN--GFCD 345

Query: 241 --NVSRAREIFDELSKLGKDMKVSTLNAMLEAYC-MNGLPTEADLLFENSHNMGVTPDSS 297
              +  A  +F++L   G    + T N ++  Y  +  L    DL+ E      + P   
Sbjct: 346 VRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERC-IAPSKV 404

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           TY +L  A+ + N  E   ++   ME++G+VP+
Sbjct: 405 TYTILIDAFARLNHTEKACEMHSLMEKSGLVPD 437



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/334 (20%), Positives = 144/334 (43%), Gaps = 10/334 (2%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T +Y  ++        T  A+     M + G  P  + +N L+   +    ++    KA 
Sbjct: 89  TPLYDTVVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLLCLLI----RSNYFDKAW 144

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
             F ++K   +   +  ++ I+++ C +A    +   L   L E  L+P++  Y  ++D 
Sbjct: 145 WIFNELK--SKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDG 202

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             K+G +   +++  +M      P+  T+++L++ + K+    +  Q+++++  S   P 
Sbjct: 203 CCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPN 262

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREI 248
              +N +I  Y    +  KA  VF +M         +TY  +I   G C       A ++
Sbjct: 263 AYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIG--GLCRGKKFGEAVKL 320

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             +++K+G    + T N ++  +C       A  LF    + G++P   TY  L   Y+K
Sbjct: 321 VHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSK 380

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
                    L+K ME+  I P+K  +   ++ F+
Sbjct: 381 VENLAGALDLVKEMEERCIAPSKVTYTILIDAFA 414



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/222 (18%), Positives = 94/222 (42%), Gaps = 21/222 (9%)

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQ----------------CKPDIITFNLLIDSYGKRQ 170
           +++    +GM+ + +S++ R+ S +                C      ++ ++++Y    
Sbjct: 44  ILNHLLSSGMLPQAQSLILRLISGRIPSSLMLQLTQAHFTPCSTYTPLYDTVVNAYVHSH 103

Query: 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
           + D+       ++H    P   TFN+++    ++    KA ++F +   +K       Y 
Sbjct: 104 STDQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAWWIFNE---LKSKVVLDAYS 160

Query: 231 CIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
             I + G C+     +   +   L + G    V     +++  C +G    A  LF   +
Sbjct: 161 FGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMN 220

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +G+ P+  TY +L   + K  ++    ++ + M+++GIVPN
Sbjct: 221 RLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPN 262


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 151/334 (45%), Gaps = 20/334 (5%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           + +I D   YS LI  +   G    AM +F E    G +    +YN L+          K
Sbjct: 350 KGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLV----------K 399

Query: 65  ALAK---ALGYFQKMKGM--ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
            L+K    L   Q MK M    C P+I TYN+++    +   +   N +  +       P
Sbjct: 400 GLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIP 459

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           DI+T+N ++D Y K   + +   +L  M S+   PD+IT+N L++   K +  D +   F
Sbjct: 460 DIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTF 519

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           K+++     P + T+N +I ++ K R   +A  +F++M     TP  +T   +I   G C
Sbjct: 520 KAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLIC--GLC 577

Query: 240 DN--VSRAREIFDELSKLGK-DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
            N  + +A E+F  + K  K     +  N M+ A+C     + A+ LF         PD+
Sbjct: 578 SNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDN 637

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            TY+++  +Y K    +L    L      G+VP+
Sbjct: 638 YTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPS 671



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 136/308 (44%), Gaps = 9/308 (2%)

Query: 25  GQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP 84
           G+   A+ L + M   GC  +   Y A+I+       K     +A   F +M     C P
Sbjct: 160 GRPTAALRLLNNMPGQGCEFNAVSYCAVISGFY----KENCQIEAYHLFDEMLKQGIC-P 214

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           +I+T+N L+    +  NV +   LF ++ +  + P+++T+N  +    + G I E   +L
Sbjct: 215 DILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLL 274

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             + S    PD+I++N LI  + K     + E     +++S  +P   T+N++I  + KA
Sbjct: 275 ESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKA 334

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVS 262
            +   A+ + +      + P   TY  +I   G C+  +++RA  +F E  + G    + 
Sbjct: 335 GMMQNADKILRDAMFKGFIPDEFTYSSLIN--GLCNDGDMNRAMAVFYEAMEKGFKHSII 392

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
             N +++     GL  +A  L ++    G +PD  TY L+     K         +L   
Sbjct: 393 LYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDA 452

Query: 323 EQNGIVPN 330
              G +P+
Sbjct: 453 IAKGCIPD 460



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 138/317 (43%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  +I+   K+     A  LF EM   G  PD   +N LI    H   K   + ++   F
Sbjct: 184 YCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLI----HVLCKKGNVQESEKLF 239

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+     C PN+ T+NI ++   +   +D+   L + +    L PD+ +YN ++  + K
Sbjct: 240 SKVMKRGVC-PNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCK 298

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +  + E E  L +M ++  +P+  T+N +I+ + K       +++ +  M     P   T
Sbjct: 299 HSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFT 358

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           ++S+I          +A  VF +     +  S I Y  ++        V +A ++  ++ 
Sbjct: 359 YSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMM 418

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G    + T N ++   C  G  ++A+ +  ++   G  PD  T+  L   Y K    +
Sbjct: 419 EHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMD 478

Query: 314 LVQKLLKRMEQNGIVPN 330
              ++L  M  +GI P+
Sbjct: 479 KAIEILDTMLSHGITPD 495



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 146/341 (42%), Gaps = 5/341 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++KLI V+ KKG  + +  LFS++   G  P+   +N  I        +  A+ +A
Sbjct: 215 DILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLC----RKGAIDEA 270

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               + +   E   P++++YN L+    +   + +      ++  S + P+ +TYN +++
Sbjct: 271 ARLLESIVS-EGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIIN 329

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            + K GM++  + +L         PD  T++ LI+        ++   VF   M    K 
Sbjct: 330 GFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKH 389

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           ++  +N+++    K  L  +A  + + M     +P   TY  ++        +S A  I 
Sbjct: 390 SIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGIL 449

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           ++    G    + T N +++ YC      +A  + +   + G+TPD  TY  L     KA
Sbjct: 450 NDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKA 509

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
              + V    K M + G  PN   +   +E+F      S++
Sbjct: 510 RKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEA 550



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 128/313 (40%), Gaps = 6/313 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++  + K G    A  + ++    GC PD   +N LI  +   R+    + KA
Sbjct: 425 DIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRN----MDKA 480

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +     M       P+++TYN LL    +AR +D V   FK + E    P+I TYN +++
Sbjct: 481 IEILDTMLS-HGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIE 539

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS-KEK 188
           ++ K+  + E   +   MK+    PDI+T   LI         DK  ++F ++    K  
Sbjct: 540 SFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFS 599

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
            +   FN MI  +        AE +F KM      P   TY  +I  Y    N+  A   
Sbjct: 600 YSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTF 659

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             E    G     +T   +L   C+    +EA ++       G+ P+             
Sbjct: 660 LLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPEEVNSIFEADKKEV 719

Query: 309 ANMKELVQKLLKR 321
           A  K +V+ LLK+
Sbjct: 720 AAPKIVVEYLLKK 732



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 145/350 (41%), Gaps = 32/350 (9%)

Query: 12  GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT----------------- 54
           G+Y  ++   G+KG+ + A+ +F  M    C P    YNA++                  
Sbjct: 77  GVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMR 136

Query: 55  ---------AHLHT-RDKAKAL----AKALGYFQKMKGMERCKPNIVTYNILLRACAQAR 100
                     + HT R K+  +      AL     M G + C+ N V+Y  ++    +  
Sbjct: 137 MKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPG-QGCEFNAVSYCAVISGFYKEN 195

Query: 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
              +   LF E+ +  + PDI T+N ++    K G ++E E + S++      P++ TFN
Sbjct: 196 CQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFN 255

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
           + I    ++ A D+  ++ +S++     P + ++N++I  + K     +AE    KM   
Sbjct: 256 IFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNS 315

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
              P+  TY  II  +     +  A +I  +    G      T ++++   C +G    A
Sbjct: 316 GVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRA 375

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +F  +   G       Y  L K  +K  +     +L+K M ++G  P+
Sbjct: 376 MAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPD 425



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/284 (21%), Positives = 121/284 (42%), Gaps = 10/284 (3%)

Query: 58  HTRDKAKALAKALGYFQKMKGMERC----KPNIVT------YNILLRACAQARNVDQVNA 107
           HT +  K + + LG   K + ME      + N+ +      Y  ++R   +   V +   
Sbjct: 38  HTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVN 97

Query: 108 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
           +F+ +      P + +YN +M+   + G   +   V  RMK     PD+ T  + + S+ 
Sbjct: 98  VFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFC 157

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
                    ++  ++     +    ++ ++I  + K   Q +A ++F +M      P  +
Sbjct: 158 ITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDIL 217

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           T+  +I +     NV  + ++F ++ K G    + T N  ++  C  G   EA  L E+ 
Sbjct: 218 TFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESI 277

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
            + G+TPD  +Y  L   + K +     +  L +M  +G+ PN+
Sbjct: 278 VSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNE 321


>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
 gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
          Length = 480

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 146/301 (48%), Gaps = 8/301 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           +  D   +  LI    K G  +        M  +G  P+  +YN LI+       KA  L
Sbjct: 25  FSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCLC----KAGML 80

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A+A  Y ++M   + C PN+V+YNI++    +ARN+++  A  +E+ E    P  + Y+ 
Sbjct: 81  AEAESYLKRMP--QHCAPNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSS 138

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++ ++ K G + +   V + M +  C+PDI+ FN+L+    + +   +  ++F+S+    
Sbjct: 139 IVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRG 198

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            KP + T+N+MI    K +   +A ++ ++M     +P+F+TY  +I        + +A 
Sbjct: 199 CKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAY 258

Query: 247 EIFDELSK--LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           E+F+++++          ++  ++   C    P EA  +F+     G++P   TY  L +
Sbjct: 259 EVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLE 318

Query: 305 A 305
            
Sbjct: 319 G 319



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/350 (20%), Positives = 150/350 (42%), Gaps = 42/350 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS ++    K G    AM +F+EM   GC PD   +N L++       +A+ + +A   F
Sbjct: 136 YSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLW----RARKIHEARELF 191

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M     CKP++VTYN ++    + + +D+   L + + +  ++P   TY  ++D   K
Sbjct: 192 RSMNS-RGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCK 250

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFN--LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
              +++   V  +M    C      ++  +LI+   K +   + +++F+ +      PT+
Sbjct: 251 FARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTV 310

Query: 192 PTFNSMIINY-GKARLQG-------------------------------KAEYVFQKMTA 219
            T+N+++      A+LQ                                + E  F+ ++A
Sbjct: 311 VTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSA 370

Query: 220 MK---YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M+   + PS   +E +++       +  A E++ E+S++     V + N +L+     G 
Sbjct: 371 MRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGS 430

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
             EA    +   + G+ PD  TY  L          +  +KL++ + ++G
Sbjct: 431 VDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVRDG 480



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 113/249 (45%), Gaps = 6/249 (2%)

Query: 62  KAKALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
           +A  +A+A    ++MK  G     P++ ++ +L+R   ++ +  +  +    + E+ L P
Sbjct: 6   EADLVAQAEAIVEEMKYAGF---SPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFP 62

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           +   YN ++    K GM+ E ES L RM    C P+++++N++ID Y K +  +K     
Sbjct: 63  NAILYNNLISCLCKAGMLAEAESYLKRM-PQHCAPNVVSYNIIIDGYCKARNIEKALAFL 121

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           + +      PT   ++S++ ++ K     KA  VF +M A    P  + +  +++     
Sbjct: 122 REMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRA 181

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             +  ARE+F  ++  G    V T N M+   C      EA  L E      V+P   TY
Sbjct: 182 RKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTY 241

Query: 300 KLLYKAYTK 308
             L     K
Sbjct: 242 TTLIDHLCK 250



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 105/238 (44%), Gaps = 1/238 (0%)

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +R   +A  V Q  A+ +E+  +  +PD+ ++  ++  + K+G  +   S L RM     
Sbjct: 1   IRKLVEADLVAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGL 60

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            P+ I +N LI    K     + E   K  M     P + ++N +I  Y KAR   KA  
Sbjct: 61  FPNAILYNNLISCLCKAGMLAEAESYLKR-MPQHCAPNVVSYNIIIDGYCKARNIEKALA 119

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
             ++M  + + P+   Y  I+  +    NVS+A ++F E+   G +  +   N +L    
Sbjct: 120 FLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLW 179

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                 EA  LF + ++ G  PD  TY  +     K    +    LL+RM+Q  + P 
Sbjct: 180 RARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPT 237



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 94/212 (44%), Gaps = 8/212 (3%)

Query: 136 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195
           ++ + E+++  MK     PD+ +  LLI  + K  +F +       ++ +   P    +N
Sbjct: 9   LVAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYN 68

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
           ++I    KA +  +AE   ++M      P+ ++Y  II  Y    N+ +A     E+ +L
Sbjct: 69  NLISCLCKAGMLAEAESYLKRM-PQHCAPNVVSYNIIIDGYCKARNIEKALAFLREMEEL 127

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
           G        +++++++C  G  ++A  +F      G  PD   + +L     +A      
Sbjct: 128 GHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEA 187

Query: 316 QKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
           ++L + M   G  P+       + T+++ +AG
Sbjct: 188 RELFRSMNSRGCKPD-------VVTYNTMIAG 212


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 151/325 (46%), Gaps = 13/325 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G+T+    L  ++     +PD  +YN +I    H+  K K L  A   +
Sbjct: 171 YRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTII----HSLCKNKLLGDACDLY 226

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  KG+    PN+VTYN L+       ++ +  +L  E+    + PD+ T+N ++DA 
Sbjct: 227 SEMIVKGIS---PNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDAL 283

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           GK G +K  + VL+ M     KPD++T+N LID Y         + VF S+  S   P +
Sbjct: 284 GKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNV 343

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIF 249
            T+ +MI    K ++  +A  +F++M      P  +TY  +I   G C N  + RA  + 
Sbjct: 344 RTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLID--GLCKNHHLERAIALC 401

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            ++ + G    V +   +L+A C  G    A   F+     G   +  TY ++     KA
Sbjct: 402 KKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKA 461

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
           ++      L  +ME  G +P+   F
Sbjct: 462 DLFGEAMDLKSKMEGKGCMPDAITF 486



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 136/318 (42%), Gaps = 5/318 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ +I  + K      A  L+SEM   G  P+   YNAL+            L +A
Sbjct: 202 DVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFC----IMGHLKEA 257

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                +MK ++   P++ T+N L+ A  +   +     +   + ++ + PD+ TYN ++D
Sbjct: 258 FSLLNEMK-LKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLID 316

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y     +K  + V   M  +   P++ T+  +ID   K +  D+   +F+ + +    P
Sbjct: 317 GYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIP 376

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ S+I    K     +A  + +KM      P   +Y  ++        +  A+E F
Sbjct: 377 DIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFF 436

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             L   G  + V T N M+   C   L  EA  L       G  PD+ T+K +  A  + 
Sbjct: 437 QRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEK 496

Query: 310 NMKELVQKLLKRMEQNGI 327
           +  +  +K+L+ M   G+
Sbjct: 497 DENDKAEKILREMIARGL 514



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 127/305 (41%), Gaps = 11/305 (3%)

Query: 29  LAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88
            A  + + +   G  P+    N LI       +  KAL     YF      +  + N V+
Sbjct: 116 FAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKAL-----YFHDQVVAQGFQLNQVS 170

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y  L+    +      V  L ++L    + PD+  YN ++ +  KN ++ +   + S M 
Sbjct: 171 YRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMI 230

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK---PTLPTFNSMIINYGKAR 205
                P+++T+N L+  +        +++ F  L   K K   P + TFN++I   GK  
Sbjct: 231 VKGISPNVVTYNALVYGFC---IMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEG 287

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
               A+ V   M      P  +TY  +I  Y + + V  A+ +F  +++ G    V T  
Sbjct: 288 KMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYT 347

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            M++  C   +  EA  LFE      + PD  TY  L     K +  E    L K+M++ 
Sbjct: 348 TMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQ 407

Query: 326 GIVPN 330
           GI P+
Sbjct: 408 GIQPD 412



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 151/382 (39%), Gaps = 59/382 (15%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA------- 55
           K +  I D   Y+ LI  + K      A+ L  +M+  G +PD   Y  L+ A       
Sbjct: 370 KYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRL 429

Query: 56  ---------------HLHTRD---------KAKALAKALGYFQKMKGMERCKPNIVTYNI 91
                          HL+ +          KA    +A+    KM+G + C P+ +T+  
Sbjct: 430 ENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEG-KGCMPDAITFKT 488

Query: 92  LLRACAQARNVDQVNALFKEL-----------------------HESILAPDIYTYNGVM 128
           ++ A  +    D+   + +E+                        ++ + PD+ TY  +M
Sbjct: 489 IICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLM 548

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D Y     +K  + V   M      P++  + ++ID   K++  D+   +F+ + H    
Sbjct: 549 DGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMF 608

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAR 246
           P + T+ S+I    K     +A  + ++M      P   +Y   I + G C +  +  A+
Sbjct: 609 PNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYT--ILLDGLCKSGRLEGAK 666

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           EIF  L   G  + V    AM+   C  GL  EA  L     + G  PD+ T+ ++  A 
Sbjct: 667 EIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWAL 726

Query: 307 TKANMKELVQKLLKRMEQNGIV 328
            + +  +  +K+L  M   G++
Sbjct: 727 FEKDENDKAEKILXEMIARGLM 748



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 131/326 (40%), Gaps = 45/326 (13%)

Query: 49  YNALITAHLHTRDKAK-----ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD 103
           Y  + TA LH +  ++         A+  F +M  M R  P    +N +L +    ++  
Sbjct: 22  YPPIATATLHYQSHSQPHYHHHHHHAVASFDRMLLM-RPPPPTFHFNYILSSLVNNKHYP 80

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
            V +LFK+   +   PD+ T N +M+ +     I    SVL+ +      P+ IT N LI
Sbjct: 81  TVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSVLANILKRGYHPNAITLNTLI 140

Query: 164 DSYGKR---------------QAFDKMEQVFKSLMHS--------------------KEK 188
                R               Q F   +  +++L++                       K
Sbjct: 141 KGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVK 200

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAR 246
           P +  +N++I +  K +L G A  ++ +M     +P+ +TY  ++  YG+C   ++  A 
Sbjct: 201 PDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALV--YGFCIMGHLKEAF 258

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            + +E+     +  V T N +++A    G    A ++        + PD  TY  L   Y
Sbjct: 259 SLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGY 318

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKR 332
              N  +  + +   M Q+G+ PN R
Sbjct: 319 FFLNKVKNAKYVFYSMAQSGVTPNVR 344


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 156/327 (47%), Gaps = 15/327 (4%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---HLHTRDKAKA 65
           AD  IY+ +I  +        A+ LF+EM N G RP+   YN+LI     +    D ++ 
Sbjct: 237 ADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRL 296

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L+  +          +  PN+VT++ L+ A  +   + +   L+ E+ +  + PDI+TY+
Sbjct: 297 LSDMIE--------RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 348

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++ +  +  + E + +   M S  C P+++T+N LI  + K +  ++  ++F+ +   
Sbjct: 349 SLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQR 408

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVS 243
                  T+N++I    +A     A+ +F+KM +    P  ITY   I + G C    + 
Sbjct: 409 GLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS--ILLDGLCKYGKLE 466

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           +A  +F+ L K   +  + T N M+E  C  G   +   LF +    GV P+   Y  + 
Sbjct: 467 KALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMI 526

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
             + +  +KE    L + M+++G +PN
Sbjct: 527 SGFCRKGLKEEADALFREMKEDGTLPN 553



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 140/319 (43%), Gaps = 44/319 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKALAKALG 71
           +S LI    K+G+   A  L+ EM      PD   Y++LI    +H R D+AK +     
Sbjct: 312 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM----- 366

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            F+ M   + C PN+VTYN L++   +A+ V++   LF+E+ +  L  +  TYN ++   
Sbjct: 367 -FELMISKD-CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 424

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G     + +  +M S+   PDIIT+++L+D   K    +K   VF+ L  SK +P +
Sbjct: 425 FQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDI 484

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+N MI    KA   GK E                                   ++F  
Sbjct: 485 YTYNIMIEGMCKA---GKVE--------------------------------DGWDLFCS 509

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           LS  G    V     M+  +C  GL  EAD LF      G  P+S TY  L +A  +   
Sbjct: 510 LSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGD 569

Query: 312 KELVQKLLKRMEQNGIVPN 330
           K    +L+K M   G V +
Sbjct: 570 KAASAELIKEMRSCGFVGD 588



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 152/355 (42%), Gaps = 46/355 (12%)

Query: 14  YSKLIAVMGK-----------------------------------KGQTRLAMWLFSEMR 38
           ++KL++ + K                                   + Q  LA+ +  +M 
Sbjct: 67  FNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMM 126

Query: 39  NSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
             G  PD    ++L+  + H     K +++A+    +M  ME  +PN VT+N L+     
Sbjct: 127 KLGYEPDIVTLSSLLNGYCH----GKRISEAVALVDQMFVMEY-QPNTVTFNTLIHGLFL 181

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
                +  AL   +      PD++TY  V++   K G I    S+L +M+  + + D++ 
Sbjct: 182 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 241

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI---INYGKARLQGKAEYVFQ 215
           +  +ID+    +  +    +F  + +   +P + T+NS+I    NYG+      A  +  
Sbjct: 242 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGR---WSDASRLLS 298

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            M   K  P+ +T+  +I  +     +  A +++DE+ K   D  + T ++++  +CM+ 
Sbjct: 299 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 358

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              EA  +FE   +    P+  TY  L K + KA   E   +L + M Q G+V N
Sbjct: 359 RLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGN 413



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 153/356 (42%), Gaps = 48/356 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    ++ Q  LA+ +  +M   G  PD    ++L+  + H     K +++A+   
Sbjct: 102 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCH----GKRISEAVALV 157

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M  ME  +PN VT+N L+          +  AL   +      PD++TY  V++   K
Sbjct: 158 DQMFVMEY-QPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCK 216

Query: 134 NG-------MIKEME----------------------------SVLSRMKSNQCKPDIIT 158
            G       ++K+ME                            ++ + M +   +P+++T
Sbjct: 217 RGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 276

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +N LI        +    ++   ++  K  P + TF+++I  + K     +AE ++ +M 
Sbjct: 277 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 336

Query: 219 AMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMN 274
                P   TY  +I   G+C  D +  A+ +F+ +  + KD    V T N +++ +C  
Sbjct: 337 KRSIDPDIFTYSSLIN--GFCMHDRLDEAKHMFELM--ISKDCFPNVVTYNTLIKGFCKA 392

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
               E   LF      G+  ++ TY  L +   +A   ++ QK+ K+M  +G+ P+
Sbjct: 393 KRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD 448



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 110/226 (48%), Gaps = 9/226 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI       +   A  +F  M +  C P+   YN LI        KAK + + 
Sbjct: 343 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC----KAKRVEEG 398

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +  F++M  +G+     N VTYN L++   QA + D    +FK++    + PDI TY+ +
Sbjct: 399 MELFREMSQRGL---VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSIL 455

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D   K G +++   V   ++ ++ +PDI T+N++I+   K    +    +F SL     
Sbjct: 456 LDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 515

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           KP +  + +MI  + +  L+ +A+ +F++M      P+  TY  +I
Sbjct: 516 KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLI 561



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 125/282 (44%), Gaps = 13/282 (4%)

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L  A+  F +M    R  P+IV +N LL A A+    D V +L + +    ++ D+Y+YN
Sbjct: 45  LDDAVDLFGEMV-QSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 103

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY--GKR--QAFDKMEQVFKS 181
            +++ + +   +    +VL +M     +PDI+T + L++ Y  GKR  +A   ++Q+F  
Sbjct: 104 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFV- 162

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC-- 239
               + +P   TFN++I          +A  +  +M A    P   TY  ++   G C  
Sbjct: 163 ---MEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVN--GLCKR 217

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            ++  A  +  ++ K   +  V     +++A C      +A  LF    N G+ P+  TY
Sbjct: 218 GDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 277

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
             L +            +LL  M +  I PN   F   ++ F
Sbjct: 278 NSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAF 319



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 141/320 (44%), Gaps = 16/320 (5%)

Query: 30  AMWLFSEMRNSGCRPDPSV--YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 87
           A+ LF EM  S  RP PS+  +N L++A +   +K   L  +LG  ++M+ + R   ++ 
Sbjct: 48  AVDLFGEMVQS--RPLPSIVEFNKLLSA-IAKMNKFD-LVISLG--ERMQNL-RISYDLY 100

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           +YNIL+    +   +    A+  ++ +    PDI T + +++ Y     I E  +++ +M
Sbjct: 101 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 160

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
              + +P+ +TFN LI          +   +   ++    +P L T+ +++    K    
Sbjct: 161 FVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDI 220

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
             A  + +KM   K     + Y  II       NV+ A  +F E+   G    V T N++
Sbjct: 221 DLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 280

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +   C  G  ++A  L  +     + P+  T+  L  A+ K       +KL   M +  I
Sbjct: 281 IRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 340

Query: 328 VPNKRFFLEALETFSSSLAG 347
            P+       + T+SS + G
Sbjct: 341 DPD-------IFTYSSLING 353



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 5/160 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR  + +T  Y+ LI  + + G   +A  +F +M + G  PD   Y+ L+          
Sbjct: 407 QRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLE 466

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           KAL     Y QK K ME   P+I TYNI++    +A  V+    LF  L    + P++  
Sbjct: 467 KALV-VFEYLQKSK-ME---PDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVII 521

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           Y  ++  + + G+ +E +++   MK +   P+  T+N LI
Sbjct: 522 YTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLI 561



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 12/140 (8%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS L+  + K G+   A+ +F  ++ S   PD   YN +I        KA  +   
Sbjct: 448 DIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMC----KAGKVEDG 503

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F  +  ++  KPN++ Y  ++    +    ++ +ALF+E+ E    P+  TYN ++ 
Sbjct: 504 WDLFCSL-SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIR 562

Query: 130 AYGKNG-------MIKEMES 142
           A  ++G       +IKEM S
Sbjct: 563 ARLRDGDKAASAELIKEMRS 582


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 81/320 (25%), Positives = 147/320 (45%), Gaps = 11/320 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G T  A+ L   M    C+PD  +Y ++I +      K + + +A   F
Sbjct: 173 YGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLC----KDRQVTEAFNLF 228

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M G +   P+I TY  L+ A         V  L  ++  S + PD+  ++ V+DA  K
Sbjct: 229 SQMVG-QGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCK 287

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + E   ++  M     +PD++T+  L+D +  +   D+  +VF  ++     P + +
Sbjct: 288 EGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVIS 347

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE---IFD 250
           + ++I  Y K     KA Y+F++M   ++ P   TY  +  MYG C +V R ++   +F 
Sbjct: 348 YTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTL--MYGLC-HVGRLQDAIALFH 404

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+   G+   + T + +L++ C N    EA  L +      + PD   Y ++     +A 
Sbjct: 405 EMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAG 464

Query: 311 MKELVQKLLKRMEQNGIVPN 330
             E  + L   +   G+ P+
Sbjct: 465 ELEAARDLFSNLSSKGLHPS 484



 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 89/364 (24%), Positives = 146/364 (40%), Gaps = 46/364 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  IY+ +I  + K  Q   A  LFS+M   G  PD   Y +L+ A L    + K +   
Sbjct: 204 DVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHA-LCNLCEWKHVTTL 262

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L      K +    P++V ++ ++ A  +   V + + +   + +  + PD+ TY  +MD
Sbjct: 263 LNQMVNSKIL----PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMD 318

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +     + E   V   M      PD+I++  LI+ Y K    DK   +F+ +   +  P
Sbjct: 319 GHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIP 378

Query: 190 TLPTFNSMIINYG---KARLQGKAEYVFQKMTAMKYTPSFITYECI-------------- 232
              T+N+++  YG     RLQ  A  +F +M A    P  +TY  +              
Sbjct: 379 DTKTYNTLM--YGLCHVGRLQ-DAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAM 435

Query: 233 -------------------ITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
                              I + G C    +  AR++F  LS  G    V T N M+   
Sbjct: 436 ALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGL 495

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           C  GL  EA+ LF        +PD  TY  + + + + N      +LL+ M   G   + 
Sbjct: 496 CKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADS 555

Query: 332 RFFL 335
            F +
Sbjct: 556 CFLM 559



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 143/341 (41%), Gaps = 40/341 (11%)

Query: 29  LAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88
            A  + +++   G +PDP+ +  LI   L    K   + +AL  F KM   E  +PN+VT
Sbjct: 118 FAFSVLAKILKLGHQPDPTTFTTLIRG-LCVEGK---IGEALHLFDKMID-EGFQPNVVT 172

Query: 89  YNI----------------LLRACAQA-------------------RNVDQVNALFKELH 113
           Y                  LLR+  Q                    R V +   LF ++ 
Sbjct: 173 YGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMV 232

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
              ++PDI+TY  ++ A       K + ++L++M +++  PD++ F+ ++D+  K     
Sbjct: 233 GQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVT 292

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           +  ++   ++    +P + T+ +++  +       +A  VF  M    + P  I+Y  +I
Sbjct: 293 EAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLI 352

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
             Y     + +A  +F+E+ +        T N ++   C  G   +A  LF      G  
Sbjct: 353 NGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQM 412

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           PD  TY +L  +  K    E    LLK +E + + P+ + +
Sbjct: 413 PDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVY 453



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 105/223 (47%), Gaps = 5/223 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  ++ +  D   Y+ LI    K  +   AM+LF EM      PD   YN L+    H  
Sbjct: 335 MMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHV- 393

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
                L  A+  F +M    +  P++VTY+ILL +  + R++++  AL K +  S L PD
Sbjct: 394 ---GRLQDAIALFHEMVARGQ-MPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPD 449

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           I  YN ++D   + G ++    + S + S    P + T+N++I    KR   ++  ++F 
Sbjct: 450 IQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFM 509

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
            +  +   P   T+N++   + +     +A  + ++M A  ++
Sbjct: 510 EMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFS 552



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 114/258 (44%), Gaps = 9/258 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--LH 58
           M  QR    D   Y+ L+     + +   A+ +F  M   G  PD   Y  LI  +  +H
Sbjct: 300 MMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIH 359

Query: 59  TRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
             DKA  L      F++M   E   P+  TYN L+        +    ALF E+      
Sbjct: 360 KIDKAMYL------FEEMCRKEWI-PDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQM 412

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD+ TY+ ++D+  KN  ++E  ++L  ++++   PDI  +N++ID   +    +    +
Sbjct: 413 PDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDL 472

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           F +L      P++ T+N MI    K  L  +A  +F +M     +P   TY  I   +  
Sbjct: 473 FSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQ 532

Query: 239 CDNVSRAREIFDELSKLG 256
            +   RA ++ +E+   G
Sbjct: 533 NNETLRAIQLLEEMLARG 550



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 91/216 (42%)

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           P I  +  ++ +  K      + S+ ++M S    P++ T N+LI+S+           V
Sbjct: 63  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 122

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
              ++    +P   TF ++I         G+A ++F KM    + P+ +TY  +I     
Sbjct: 123 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCK 182

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             N S A  +   + +      V    +++++ C +   TEA  LF      G++PD  T
Sbjct: 183 VGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFT 242

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           Y  L  A       + V  LL +M  + I+P+   F
Sbjct: 243 YTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIF 278



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 106/265 (40%), Gaps = 1/265 (0%)

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L  AL  F ++  M    P+IV +  LL + A+ ++   V +L  ++    + P++YT N
Sbjct: 46  LDDALSSFNRLLHMHP-PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLN 104

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++++     +    SVL+++     +PD  TF  LI          +   +F  ++  
Sbjct: 105 ILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDE 164

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
             +P + T+ ++I    K      A  + + M      P  + Y  II        V+ A
Sbjct: 165 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEA 224

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             +F ++   G    + T  +++ A C          L     N  + PD   +  +  A
Sbjct: 225 FNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDA 284

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
             K        +++  M Q G+ P+
Sbjct: 285 LCKEGKVTEAHEIVDMMIQRGVEPD 309



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 66/163 (40%)

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           F  L+H    P++  F  ++ +  K +       +  +M +    P+  T   +I  + +
Sbjct: 53  FNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCH 112

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
            + V  A  +  ++ KLG     +T   ++   C+ G   EA  LF+   + G  P+  T
Sbjct: 113 LNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVT 172

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           Y  L     K        +LL+ MEQ    P+   +   +++ 
Sbjct: 173 YGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSL 215


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 156/354 (44%), Gaps = 44/354 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  ++ VM K GQT LAM L  +M     + D   Y+ +I        K  +L  A   F
Sbjct: 231 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLC----KHGSLDNAFNLF 286

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+ M+    NI+TYNIL+     A   D    L +++ +  + P++ T++ ++D++ K
Sbjct: 287 NEME-MKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK 345

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++E E +   M      PD IT+  LID + K    DK  Q+   ++     P + T
Sbjct: 346 EGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRT 405

Query: 194 FNSMIINYGKAR---------------------------LQGKAEY--------VFQKMT 218
           FN +I  Y KA                            +QG  E         +FQ+M 
Sbjct: 406 FNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMV 465

Query: 219 AMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           + K  P+ +TY+  I + G CDN    +A EIF+++ K   ++ +   N ++   C    
Sbjct: 466 SRKVPPNIVTYK--ILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASK 523

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +A  LF +    GV P   TY ++     K       + L ++ME++G  P+
Sbjct: 524 VDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPD 577



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 146/326 (44%), Gaps = 9/326 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  +T  +S LI  +  +G+   A+ L   M   G +PD    N L+     +  +A+A+
Sbjct: 154 YEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAM 213

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
                   KM     C+PN VTY  +L    ++        L +++ E  +  D   Y+ 
Sbjct: 214 L----LIDKMVEYG-CQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSI 268

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++D   K+G +    ++ + M+      +IIT+N+LI  +     +D   ++ + ++  K
Sbjct: 269 IIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRK 328

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSR 244
             P + TF+ +I ++ K     +AE + ++M      P  ITY  +I   G+C  +++ +
Sbjct: 329 INPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLID--GFCKENHLDK 386

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A ++ D +   G D  + T N ++  YC      +   LF      GV  D+ TY  L +
Sbjct: 387 ANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQ 446

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
            + +     + ++L + M    + PN
Sbjct: 447 GFCELGKLNVAKELFQEMVSRKVPPN 472



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 121/266 (45%), Gaps = 5/266 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R    DT  Y+ LI    K+     A  +   M + GC P+   +N LI  +     KA
Sbjct: 361 HRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYC----KA 416

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             +   L  F+KM  +     + VTYN L++   +   ++    LF+E+    + P+I T
Sbjct: 417 NRIDDGLELFRKMS-LRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVT 475

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++D    NG  ++   +  +++ ++ + DI  +N++I         D    +F SL 
Sbjct: 476 YKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLP 535

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
               KP + T+N MI    K     +AE +F+KM    + P   TY  +I  +    + +
Sbjct: 536 LKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDAT 595

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLE 269
           ++ ++ +EL + G  +  ST+  +++
Sbjct: 596 KSVKLIEELKRCGFSVDASTIKMVID 621



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 4/176 (2%)

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P +I F+ L  +  K + +D +  + K +        L T + MI  + + R    A   
Sbjct: 86  PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145

Query: 214 FQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
             K+  + Y P+ IT+  +I   G C    VS A E+ D + ++G    + T+N ++   
Sbjct: 146 MGKIIKLGYEPNTITFSTLIN--GLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGL 203

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           C++G   EA LL +     G  P++ TY  +     K+    L  +LL++ME+  I
Sbjct: 204 CLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNI 259



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/258 (20%), Positives = 115/258 (44%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P ++ ++ L  A A+ +  D V AL K++    +A ++YT + +++ + +   +    S 
Sbjct: 86  PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           + ++     +P+ ITF+ LI+         +  ++   ++    KP L T N+++     
Sbjct: 146 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 205

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           +  + +A  +  KM      P+ +TY  ++ +       + A E+  ++ +    +    
Sbjct: 206 SGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            + +++  C +G    A  LF      G+T +  TY +L   +  A   +   KLL+ M 
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 325

Query: 324 QNGIVPNKRFFLEALETF 341
           +  I PN   F   +++F
Sbjct: 326 KRKINPNVVTFSVLIDSF 343



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/318 (20%), Positives = 135/318 (42%), Gaps = 17/318 (5%)

Query: 30  AMWLFSEMRNSGCRPDPSV--YNALITAHLHTR--DKAKALAKALGYFQKMKGMERCKPN 85
           A+ LF +M +S  RP P+V  ++ L +A   T+  D   AL K +    ++KG+     N
Sbjct: 72  AIDLFRDMIHS--RPLPTVIDFSRLFSAIAKTKQYDLVLALCKQM----ELKGIAH---N 122

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           + T +I++    + R +    +   ++ +    P+  T++ +++     G + E   ++ 
Sbjct: 123 LYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVD 182

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
           RM     KPD+IT N L++         +   +   ++    +P   T+  ++    K+ 
Sbjct: 183 RMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSG 242

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVST 263
               A  + +KM         + Y  II   G C +  +  A  +F+E+   G    + T
Sbjct: 243 QTALAMELLRKMEERNIKLDAVKYSIIID--GLCKHGSLDNAFNLFNEMEMKGITTNIIT 300

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N ++  +C  G   +   L  +     + P+  T+ +L  ++ K       ++L K M 
Sbjct: 301 YNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMI 360

Query: 324 QNGIVPNKRFFLEALETF 341
             GI P+   +   ++ F
Sbjct: 361 HRGIAPDTITYTSLIDGF 378


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 162/369 (43%), Gaps = 38/369 (10%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I D    + LI    + G+T+ A  +   + NSG  PD   YN LI  +  + +  KAL 
Sbjct: 138 IPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALE 197

Query: 68  ------------------KALGYFQKMK-GME--------RCKPNIVTYNILLRACAQAR 100
                             ++L    K+K  ME         C P+++TY IL+ A     
Sbjct: 198 VLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDS 257

Query: 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
            V Q   L  E+ +    PD+ TYN +++   K G + E    L+ M S  CKP++IT N
Sbjct: 258 GVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHN 317

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
           +++ S      +   E++   ++     P++ TFN +I    + RL G+A  V +KM   
Sbjct: 318 IILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKH 377

Query: 221 KYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
              P+ ++Y  +  ++G+C    + RA E  + +   G    + T N +L A C +G   
Sbjct: 378 GCVPNSLSYNPL--LHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVD 435

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
            A  +     + G +P   TY  +    TK    E   +LL+ M + G+ P+       +
Sbjct: 436 AAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPD-------I 488

Query: 339 ETFSSSLAG 347
            T+S+ L G
Sbjct: 489 ITYSTLLRG 497



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 147/342 (42%), Gaps = 7/342 (2%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           Q QR    D   Y+ LI           AM L  EMR  GC+PD   YN LI        
Sbjct: 234 QLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGIC---- 289

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPD 120
           K   L +A+ +   M     CKPN++T+NI+LR+ C+  R +D    L  ++     +P 
Sbjct: 290 KEGRLDEAIKFLNNMPSYG-CKPNVITHNIILRSMCSTGRWMD-AERLLSDMLRKGCSPS 347

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + T+N +++   +  ++     VL +M  + C P+ +++N L+  + + +  D+  +  +
Sbjct: 348 VVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLE 407

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++     P + T+N+++    K      A  +  ++++   +P  ITY  +I       
Sbjct: 408 IMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVG 467

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
               A E+ +E+ + G    + T + +L      G   EA  +F +   + + P + TY 
Sbjct: 468 KTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYN 527

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            +     KA         L  M + G  P +  +   +E  +
Sbjct: 528 AIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEGIA 569



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 141/328 (42%), Gaps = 6/328 (1%)

Query: 4   QRWYIA-DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +R  +A D   Y+ ++  +   G+ + AM +        C PD   Y  LI A  +    
Sbjct: 200 ERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGV 259

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +A+ K L   +K KG   CKP++VTYN+L+    +   +D+       +      P++ 
Sbjct: 260 GQAM-KLLDEMRK-KG---CKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVI 314

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           T+N ++ +    G   + E +LS M    C P ++TFN+LI+   +++   +   V + +
Sbjct: 315 THNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKM 374

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 P   ++N ++  + + +   +A    + M +    P  +TY  ++T       V
Sbjct: 375 PKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKV 434

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A EI ++LS  G    + T N +++     G    A  L E     G+ PD  TY  L
Sbjct: 435 DAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTL 494

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +   +    +   K+   ME   I P+
Sbjct: 495 LRGLGREGKVDEAIKIFHDMEGLSIKPS 522



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 7/200 (3%)

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           +NG ++E    L RM      PD+I    LI  + +     K  ++ + L +S   P + 
Sbjct: 118 RNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVI 177

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFD 250
           T+N +I  Y K+    KA  V ++M+     P  +TY  I  +   CD+  +  A E+ D
Sbjct: 178 TYNVLIGGYCKSGEIDKALEVLERMSV---APDVVTYNTI--LRSLCDSGKLKEAMEVLD 232

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
              +      V T   ++EA C +    +A  L +     G  PD  TY +L     K  
Sbjct: 233 RQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEG 292

Query: 311 MKELVQKLLKRMEQNGIVPN 330
             +   K L  M   G  PN
Sbjct: 293 RLDEAIKFLNNMPSYGCKPN 312


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 156/327 (47%), Gaps = 15/327 (4%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---HLHTRDKAKA 65
           AD  IY+ +I  +        A+ LF+EM N G RP+   YN+LI     +    D ++ 
Sbjct: 253 ADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRL 312

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L+  +          +  PN+VT++ L+ A  +   + +   L+ E+ +  + PDI+TY+
Sbjct: 313 LSDMIE--------RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 364

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++ +  +  + E + +   M S  C P+++T+N LI  + K +  ++  ++F+ +   
Sbjct: 365 SLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQR 424

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVS 243
                  T+N++I    +A     A+ +F+KM +    P  ITY   I + G C    + 
Sbjct: 425 GLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS--ILLDGLCKYGKLE 482

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           +A  +F+ L K   +  + T N M+E  C  G   +   LF +    GV P+   Y  + 
Sbjct: 483 KALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMI 542

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
             + +  +KE    L + M+++G +PN
Sbjct: 543 SGFCRKGLKEEADALFREMKEDGTLPN 569



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 140/319 (43%), Gaps = 44/319 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKALAKALG 71
           +S LI    K+G+   A  L+ EM      PD   Y++LI    +H R D+AK +     
Sbjct: 328 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM----- 382

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            F+ M   + C PN+VTYN L++   +A+ V++   LF+E+ +  L  +  TYN ++   
Sbjct: 383 -FELMISKD-CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 440

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G     + +  +M S+   PDIIT+++L+D   K    +K   VF+ L  SK +P +
Sbjct: 441 FQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDI 500

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+N MI    KA   GK E                                   ++F  
Sbjct: 501 YTYNIMIEGMCKA---GKVE--------------------------------DGWDLFCS 525

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           LS  G    V     M+  +C  GL  EAD LF      G  P+S TY  L +A  +   
Sbjct: 526 LSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGD 585

Query: 312 KELVQKLLKRMEQNGIVPN 330
           K    +L+K M   G V +
Sbjct: 586 KAASAELIKEMRSCGFVGD 604



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 152/355 (42%), Gaps = 46/355 (12%)

Query: 14  YSKLIAVMGK-----------------------------------KGQTRLAMWLFSEMR 38
           ++KL++ + K                                   + Q  LA+ +  +M 
Sbjct: 83  FNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMM 142

Query: 39  NSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
             G  PD    ++L+  + H     K +++A+    +M  ME  +PN VT+N L+     
Sbjct: 143 KLGYEPDIVTLSSLLNGYCH----GKRISEAVALVDQMFVMEY-QPNTVTFNTLIHGLFL 197

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
                +  AL   +      PD++TY  V++   K G I    S+L +M+  + + D++ 
Sbjct: 198 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 257

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI---INYGKARLQGKAEYVFQ 215
           +  +ID+    +  +    +F  + +   +P + T+NS+I    NYG+      A  +  
Sbjct: 258 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGR---WSDASRLLS 314

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            M   K  P+ +T+  +I  +     +  A +++DE+ K   D  + T ++++  +CM+ 
Sbjct: 315 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 374

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              EA  +FE   +    P+  TY  L K + KA   E   +L + M Q G+V N
Sbjct: 375 RLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGN 429



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 153/356 (42%), Gaps = 48/356 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    ++ Q  LA+ +  +M   G  PD    ++L+  + H     K +++A+   
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCH----GKRISEAVALV 173

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M  ME  +PN VT+N L+          +  AL   +      PD++TY  V++   K
Sbjct: 174 DQMFVMEY-QPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCK 232

Query: 134 NG-------MIKEME----------------------------SVLSRMKSNQCKPDIIT 158
            G       ++K+ME                            ++ + M +   +P+++T
Sbjct: 233 RGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 292

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +N LI        +    ++   ++  K  P + TF+++I  + K     +AE ++ +M 
Sbjct: 293 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 352

Query: 219 AMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMN 274
                P   TY  +I   G+C  D +  A+ +F+ +  + KD    V T N +++ +C  
Sbjct: 353 KRSIDPDIFTYSSLIN--GFCMHDRLDEAKHMFELM--ISKDCFPNVVTYNTLIKGFCKA 408

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
               E   LF      G+  ++ TY  L +   +A   ++ QK+ K+M  +G+ P+
Sbjct: 409 KRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD 464



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 110/226 (48%), Gaps = 9/226 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI       +   A  +F  M +  C P+   YN LI        KAK + + 
Sbjct: 359 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC----KAKRVEEG 414

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +  F++M  +G+     N VTYN L++   QA + D    +FK++    + PDI TY+ +
Sbjct: 415 MELFREMSQRGL---VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSIL 471

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D   K G +++   V   ++ ++ +PDI T+N++I+   K    +    +F SL     
Sbjct: 472 LDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 531

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           KP +  + +MI  + +  L+ +A+ +F++M      P+  TY  +I
Sbjct: 532 KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLI 577



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 125/282 (44%), Gaps = 13/282 (4%)

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L  A+  F +M    R  P+IV +N LL A A+    D V +L + +    ++ D+Y+YN
Sbjct: 61  LDDAVDLFGEMV-QSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 119

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY--GKR--QAFDKMEQVFKS 181
            +++ + +   +    +VL +M     +PDI+T + L++ Y  GKR  +A   ++Q+F  
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFV- 178

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC-- 239
               + +P   TFN++I          +A  +  +M A    P   TY  ++   G C  
Sbjct: 179 ---MEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVN--GLCKR 233

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            ++  A  +  ++ K   +  V     +++A C      +A  LF    N G+ P+  TY
Sbjct: 234 GDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 293

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
             L +            +LL  M +  I PN   F   ++ F
Sbjct: 294 NSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAF 335



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 141/320 (44%), Gaps = 16/320 (5%)

Query: 30  AMWLFSEMRNSGCRPDPSV--YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 87
           A+ LF EM  S  RP PS+  +N L++A +   +K   L  +LG  ++M+ + R   ++ 
Sbjct: 64  AVDLFGEMVQS--RPLPSIVEFNKLLSA-IAKMNKFD-LVISLG--ERMQNL-RISYDLY 116

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           +YNIL+    +   +    A+  ++ +    PDI T + +++ Y     I E  +++ +M
Sbjct: 117 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 176

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
              + +P+ +TFN LI          +   +   ++    +P L T+ +++    K    
Sbjct: 177 FVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDI 236

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
             A  + +KM   K     + Y  II       NV+ A  +F E+   G    V T N++
Sbjct: 237 DLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 296

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +   C  G  ++A  L  +     + P+  T+  L  A+ K       +KL   M +  I
Sbjct: 297 IRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 356

Query: 328 VPNKRFFLEALETFSSSLAG 347
            P+       + T+SS + G
Sbjct: 357 DPD-------IFTYSSLING 369



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 5/160 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR  + +T  Y+ LI  + + G   +A  +F +M + G  PD   Y+ L+          
Sbjct: 423 QRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLE 482

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           KAL     Y QK K ME   P+I TYNI++    +A  V+    LF  L    + P++  
Sbjct: 483 KALV-VFEYLQKSK-ME---PDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVII 537

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           Y  ++  + + G+ +E +++   MK +   P+  T+N LI
Sbjct: 538 YTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLI 577



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 12/140 (8%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS L+  + K G+   A+ +F  ++ S   PD   YN +I        KA  +   
Sbjct: 464 DIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMC----KAGKVEDG 519

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F  +  ++  KPN++ Y  ++    +    ++ +ALF+E+ E    P+  TYN ++ 
Sbjct: 520 WDLFCSL-SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIR 578

Query: 130 AYGKNG-------MIKEMES 142
           A  ++G       +IKEM S
Sbjct: 579 ARLRDGDKAASAELIKEMRS 598


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score =  124 bits (311), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 143/321 (44%), Gaps = 6/321 (1%)

Query: 11   TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
            T IY+ LIA+  K      A+ LF EMR+  CRPD   Y  LI        KA  + +A 
Sbjct: 1255 TKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRG----LGKAGRIDEAY 1310

Query: 71   GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
             +F +M+  E C+P+ V  N ++    +A  +D    LF+E+      P + TYN ++ A
Sbjct: 1311 HFFCEMQ-REGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKA 1369

Query: 131  -YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
             +       E+ S   RMK +   P   T+++LID + K    +K   + + +      P
Sbjct: 1370 LFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPP 1429

Query: 190  TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
                + S+I   GKA+    A  +FQ++     + S   Y  +I   G    +  A  +F
Sbjct: 1430 CPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMF 1489

Query: 250  DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            DE++KLG    V   NA++      G+  EA          G  PD ++Y ++     K 
Sbjct: 1490 DEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKT 1549

Query: 310  NMKELVQKLLKRMEQNGIVPN 330
                   ++L  M+Q+ + P+
Sbjct: 1550 GGPHRAMEMLSNMKQSTVRPD 1570



 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 90/337 (26%), Positives = 155/337 (45%), Gaps = 13/337 (3%)

Query: 10   DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
            D   Y++LI  +GK G+   A   F EM+  GCRPD    N +I    +   KA  L  A
Sbjct: 1289 DVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMI----NFLGKAGRLDDA 1344

Query: 70   LGYFQKMKGMERCKPNIVTYNILLRACAQARN-VDQVNALFKELHESILAPDIYTYNGVM 128
            +  FQ+M+ + RC P++VTYN +++A  ++++   +V + F+ + ES ++P  +TY+ ++
Sbjct: 1345 MKLFQEMETL-RCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILI 1403

Query: 129  DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            D + K   +++   +L  M      P    +  LID+ GK + +D   ++F+ L  +   
Sbjct: 1404 DGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGS 1463

Query: 189  PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             +   +  MI + GKA     A  +F +M  +   P    Y  +++       +  A   
Sbjct: 1464 SSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALST 1523

Query: 249  FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
               + + G    +++ N +L      G P  A  +  N     V PD  +Y  +  A + 
Sbjct: 1524 MRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSH 1583

Query: 309  ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 345
            A M E   KL+K M   G       F   L T+SS L
Sbjct: 1584 AGMFEEASKLMKEMNTLG-------FEYDLITYSSIL 1613



 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 77/314 (24%), Positives = 135/314 (42%), Gaps = 9/314 (2%)

Query: 15   SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
            S ++ ++G     R A+ +F +++   C+P    YN++I   +H         K    + 
Sbjct: 1153 SDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHE----GQYEKVHQLYN 1208

Query: 75   KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
            +M     C P+ VTY+ L+ A  +    D    L  E+ E  + P    Y  ++  + K 
Sbjct: 1209 EMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKF 1268

Query: 135  GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
                   S+   M+   C+PD+ T+  LI   GK    D+    F  +     +P     
Sbjct: 1269 NDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFM 1328

Query: 195  NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI---FDE 251
            N+MI   GKA     A  +FQ+M  ++  PS +TY  II      ++ SRA E+   F+ 
Sbjct: 1329 NNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIK--ALFESKSRASEVPSWFER 1386

Query: 252  LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
            + + G      T + +++ +C      +A +L E     G  P  + Y  L  A  KA  
Sbjct: 1387 MKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKR 1446

Query: 312  KELVQKLLKRMEQN 325
             +L  +L + +++N
Sbjct: 1447 YDLACELFQELKEN 1460



 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 112/229 (48%), Gaps = 7/229 (3%)

Query: 14   YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
            YS LI    K  +   AM L  EM   G  P P+ Y +LI A      KAK    A   F
Sbjct: 1399 YSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDA----LGKAKRYDLACELF 1454

Query: 74   QKMKGMERC-KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            Q++K  E C   +   Y ++++   +A  +D    +F E+++   APD+Y YN +M    
Sbjct: 1455 QELK--ENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLA 1512

Query: 133  KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
            + GM+ E  S + RM+ + C PDI ++N++++   K     +  ++  ++  S  +P + 
Sbjct: 1513 RTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVV 1572

Query: 193  TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
            ++N+++     A +  +A  + ++M  + +    ITY  I+   G  D+
Sbjct: 1573 SYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGKVDH 1621



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 121/301 (40%), Gaps = 4/301 (1%)

Query: 10   DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
            DT   + +I  +GK G+   AM LF EM    C P    YN +I A   ++ +A  +   
Sbjct: 1324 DTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPS- 1382

Query: 70   LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              +F++MK      P+  TY+IL+    +   +++   L +E+ E    P    Y  ++D
Sbjct: 1383 --WFERMK-ESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLID 1439

Query: 130  AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            A GK         +   +K N        + ++I   GK    D    +F  +      P
Sbjct: 1440 ALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAP 1499

Query: 190  TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
             +  +N+++    +  +  +A    ++M      P   +Y  I+          RA E+ 
Sbjct: 1500 DVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEML 1559

Query: 250  DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
              + +      V + N +L A    G+  EA  L +  + +G   D  TY  + +A  K 
Sbjct: 1560 SNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGKV 1619

Query: 310  N 310
            +
Sbjct: 1620 D 1620



 Score = 47.4 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 96/236 (40%), Gaps = 9/236 (3%)

Query: 102  VDQVNALFKELHESILAPDIYT----YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
            V+Q   ++K + E +  P         + V+   G   M+++  ++  ++K+ +C+P   
Sbjct: 1126 VEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQ 1185

Query: 158  TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP---TFNSMIINYGKARLQGKAEYVF 214
             +N +I        ++K+ Q++  +  S E    P   T++++I  + K   +  A  + 
Sbjct: 1186 AYNSMIIMLMHEGQYEKVHQLYNEM--STEGHCFPDTVTYSALISAFCKLGRRDSAIQLL 1243

Query: 215  QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
             +M  +   P+   Y  +I ++   ++   A  +F+E+        V T   ++      
Sbjct: 1244 NEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKA 1303

Query: 275  GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            G   EA   F      G  PD+     +     KA   +   KL + ME    +P+
Sbjct: 1304 GRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPS 1359


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 157/350 (44%), Gaps = 11/350 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           ++ D   Y+ ++  + K  +   A+ LF+EM   GC P+   +N +I   L  + K   +
Sbjct: 111 HVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILG-LCQQSK---I 166

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            +A   F +M+  +   P+  +Y IL+   A+A  +++   LF+ + +S + P   TYN 
Sbjct: 167 DQACQVFHEMEAKD-IPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNV 225

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           V+        + E   +   M+S  C+P   TFN+LID++ KR   D+  ++ K +    
Sbjct: 226 VIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDG 285

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSR 244
             P + T++++I           A ++ + M   +  P+ +T   +I  +G C    +  
Sbjct: 286 HVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLI--HGLCKAGRIKE 343

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           ARE+ D +   G+   V T N ++  +C  G    A  L  +    G+ P+  TY  L  
Sbjct: 344 AREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVS 403

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAK 354
              KAN       +  +M+ +G  PN   +   +  F S  AG   G  K
Sbjct: 404 GLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCS--AGQVDGGLK 451



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 142/332 (42%), Gaps = 32/332 (9%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHL-------------------HTRD--------- 61
           A  LF++M   GC P P  YN +I A                     H  D         
Sbjct: 64  ARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMD 123

Query: 62  ---KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
              K+  + +AL  F +M+ +  C PN  ++N ++    Q   +DQ   +F E+    + 
Sbjct: 124 GLCKSSRVEEALLLFNEMERLG-CTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIP 182

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD ++Y  ++D   K G + E   +  RM  +   P  +T+N++I         D+  ++
Sbjct: 183 PDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALEL 242

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           FKS+     +P+  TFN +I  + K     +A  + ++MT   + P  +TY  +I+    
Sbjct: 243 FKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCS 302

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              V  AR + +++ K      V T N ++   C  G   EA  + +   + G +PD  T
Sbjct: 303 IARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVT 362

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y  L   + +A   E  ++LL  M   G+ PN
Sbjct: 363 YNTLVHGHCRAGQTERARELLSDMVARGLAPN 394



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 138/311 (44%), Gaps = 5/311 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D+  Y  LI  + K G+   A  LF  M +SG  P    YN +I    H    A  L +A
Sbjct: 184 DSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVI----HGMCLAYTLDEA 239

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  F+ M+  + C+P+  T+NIL+ A  +   +D+   L K + +    PD+ TY+ ++ 
Sbjct: 240 LELFKSMRS-KGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLIS 298

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
                  + +   +L  M   QCKP ++T N LI    K     +  +V  +++ S + P
Sbjct: 299 GLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSP 358

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+N+++  + +A    +A  +   M A    P+ +TY  +++     + +  A  +F
Sbjct: 359 DVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVF 418

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            ++   G    + T  A++  +C  G       LF      G++PD   Y  L     K+
Sbjct: 419 AQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKS 478

Query: 310 NMKELVQKLLK 320
                  ++L+
Sbjct: 479 GRSARALEILR 489



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 147/331 (44%), Gaps = 13/331 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R    D+  Y  LI  + K G+   A  LF ++ +SG  P    Y +LI    H    A
Sbjct: 3   ERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLI----HGLCMA 58

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            +   A   F  M     C P+ VTYN+++ A  +   +++   L K++ E    PD+ T
Sbjct: 59  NSFDDARELFADMN-RRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVT 117

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN VMD   K+  ++E   + + M+   C P+  + N +I    ++   D+  QVF  + 
Sbjct: 118 YNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEME 177

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--N 241
                P   ++  +I    KA    +A  +FQ+M     TPS +TY  +I  +G C    
Sbjct: 178 AKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVI--HGMCLAYT 235

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +  A E+F  +   G      T N +++A+C  G   EA  L +   + G  PD  TY  
Sbjct: 236 LDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYST 295

Query: 302 LYKAYTKA----NMKELVQKLLKRMEQNGIV 328
           L           + + L++ ++KR  +  +V
Sbjct: 296 LISGLCSIARVDDARHLLEDMVKRQCKPTVV 326



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 140/320 (43%), Gaps = 17/320 (5%)

Query: 44  PDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARN 101
           PD   Y  LI        KA  L  A   FQK+   G+    P+ V Y  L+     A +
Sbjct: 8   PDSWSYGILIDGLA----KAGKLNDARNLFQKLLHSGV---TPSTVAYTSLIHGLCMANS 60

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
            D    LF +++     P   TYN ++DA  K GM++E   ++ +M  +   PD++T+N 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           ++D   K    ++   +F  +      P   + N++I+   +     +A  VF +M A  
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
             P   +Y  +I        ++ A ++F  +   G      T N ++   C+     EA 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            LF++  + G  P   T+ +L  A+ K    +   +LLKRM  +G VP+       + T+
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPD-------VVTY 293

Query: 342 SSSLAGSQSGSAKTDLTRSL 361
           S+ ++G  S  A+ D  R L
Sbjct: 294 STLISGLCS-IARVDDARHL 312



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 30/252 (11%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAK----------ALGYFQKMK 77
           A+ LF  MR+ GCRP    +N LI AH      D+A  L K           + Y   + 
Sbjct: 239 ALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLIS 298

Query: 78  GM------------------ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
           G+                   +CKP +VT N L+    +A  + +   +   +  S  +P
Sbjct: 299 GLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSP 358

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D+ TYN ++  + + G  +    +LS M +    P+++T+  L+    K     +   VF
Sbjct: 359 DVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVF 418

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             +  S   P L T+ ++I+ +  A        +F +M     +P  + Y  +       
Sbjct: 419 AQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKS 478

Query: 240 DNVSRAREIFDE 251
              +RA EI  E
Sbjct: 479 GRSARALEILRE 490


>gi|356540087|ref|XP_003538522.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 130/263 (49%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +AL     +      +P++  YN+LLR   +A+     + LF E+ +  L+PD YTY+ +
Sbjct: 126 RALALLDWINDKALYRPSLFAYNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTL 185

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  +GK+G+       L +M+ +    D++ ++ LID   K   + K   +F  L  S  
Sbjct: 186 ITCFGKHGLFDSSLFWLQQMEQDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKASTI 245

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P L  +NSMI  +GKA+L  +A  + Q+M      P  ++Y  ++ +Y        A  
Sbjct: 246 TPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALS 305

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F E+++    + ++T N M++ Y    +P EAD LF +   MG+ P+  +Y  L + Y 
Sbjct: 306 LFSEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVISYNTLLRVYG 365

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           +A++      L + M+   +  N
Sbjct: 366 EADLFGEAIHLFRLMQSKDVQQN 388



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 159/330 (48%), Gaps = 11/330 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +Q+    D   YS LI   GK G    +++   +M       D  +Y+ LI       D 
Sbjct: 171 RQKGLSPDRYTYSTLITCFGKHGLFDSSLFWLQQMEQDNVSGDLVLYSNLI-------DL 223

Query: 63  AKALA---KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
           A+ L+   KA+  F ++K      P+++ YN ++    +A+   +   L +E+ ++ + P
Sbjct: 224 ARKLSDYSKAISIFSRLKA-STITPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQP 282

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D  +Y+ ++  Y  N    E  S+ S M   +C  D+ T N++ID YG+     + +++F
Sbjct: 283 DTVSYSTLLAIYVDNQKFVEALSLFSEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLF 342

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
            S+     +P + ++N+++  YG+A L G+A ++F+ M +     + +TY  +I +YG  
Sbjct: 343 WSMRKMGIQPNVISYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKT 402

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
               +A  +  E++K G +    T + ++  +   G    A +LF+   + GV  D   Y
Sbjct: 403 LEHEKATNLIQEMNKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLY 462

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           + +  AY +  +    ++LL  +++   +P
Sbjct: 463 QTMIVAYERTGLVAHAKRLLHELKRPDNIP 492



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 145/314 (46%), Gaps = 5/314 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + +  Q  LA  LF EMR  G  PD   Y+ LIT       K      +L + 
Sbjct: 147 YNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITCF----GKHGLFDSSLFWL 202

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           Q+M+  +    ++V Y+ L+    +  +  +  ++F  L  S + PD+  YN +++ +GK
Sbjct: 203 QQME-QDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKASTITPDLIAYNSMINVFGK 261

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
             + +E   +L  M+ N  +PD ++++ L+  Y   Q F +   +F  +  +K    L T
Sbjct: 262 AKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFSEMNEAKCPLDLTT 321

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            N MI  YG+  +  +A+ +F  M  M   P+ I+Y  ++ +YG  D    A  +F  + 
Sbjct: 322 CNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVISYNTLLRVYGEADLFGEAIHLFRLMQ 381

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
                  V T N M+  Y       +A  L +  +  G+ P++ TY  +   + KA   +
Sbjct: 382 SKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMNKRGIEPNAITYSTIISIWEKAGKLD 441

Query: 314 LVQKLLKRMEQNGI 327
               L +++  +G+
Sbjct: 442 RAAILFQKLRSSGV 455



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 141/298 (47%), Gaps = 7/298 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ S   PD   YN++I        KAK   +
Sbjct: 212 GDLVLYSNLIDLARKLSDYSKAISIFSRLKASTITPDLIAYNSMINVF----GKAKLFRE 267

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A    Q+M+     +P+ V+Y+ LL      +   +  +LF E++E+    D+ T N ++
Sbjct: 268 ARLLLQEMRD-NAVQPDTVSYSTLLAIYVDNQKFVEALSLFSEMNEAKCPLDLTTCNIMI 326

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE- 187
           D YG+  M KE + +   M+    +P++I++N L+  YG+   F +   +F+ LM SK+ 
Sbjct: 327 DVYGQLHMPKEADRLFWSMRKMGIQPNVISYNTLLRVYGEADLFGEAIHLFR-LMQSKDV 385

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +  + T+N+MI  YGK     KA  + Q+M      P+ ITY  II+++     + RA  
Sbjct: 386 QQNVVTYNTMINIYGKTLEHEKATNLIQEMNKRGIEPNAITYSTIISIWEKAGKLDRAAI 445

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           +F +L   G  +       M+ AY   GL   A  L          P  +   +L +A
Sbjct: 446 LFQKLRSSGVRIDEVLYQTMIVAYERTGLVAHAKRLLHELKRPDNIPRDTAIAILARA 503



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 151/357 (42%), Gaps = 37/357 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I V GK    R A  L  EMR++  +PD   Y+ L+  ++      +   +A
Sbjct: 248 DLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDN----QKFVEA 303

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  F +M    +C  ++ T NI++    Q     + + LF  + +  + P++ +YN ++ 
Sbjct: 304 LSLFSEMNE-AKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVISYNTLLR 362

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YG+  +  E   +   M+S   + +++T+N +I+ YGK    +K   + + +     +P
Sbjct: 363 VYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMNKRGIEP 422

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T++++I  + KA    +A  +FQK+ +       + Y+ +I  Y     V+ A+ + 
Sbjct: 423 NAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERTGLVAHAKRLL 482

Query: 250 DELSK---LGKDM----------------------------KVSTLNAMLEAYCMNGLPT 278
            EL +   + +D                              +S    M+  +  N    
Sbjct: 483 HELKRPDNIPRDTAIAILARAGRIEEATWVFRQAFDAREVKDISVFGCMINLFSKNKKYA 542

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV-PNKRFF 334
               +FE    +G  PDS    L+  A+ K    +    L ++M + G V P++  F
Sbjct: 543 NVVEVFEKMREVGYFPDSDVIALVLNAFGKLREFDKADALYRQMHEEGCVFPDEVHF 599



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 113/259 (43%), Gaps = 19/259 (7%)

Query: 6   WYIADTGI------YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT 59
           W +   GI      Y+ L+ V G+      A+ LF  M++   + +   YN +I  +  T
Sbjct: 343 WSMRKMGIQPNVISYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKT 402

Query: 60  RDKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
            +  KA        Q+M  +G+E   PN +TY+ ++    +A  +D+   LF++L  S +
Sbjct: 403 LEHEKAT----NLIQEMNKRGIE---PNAITYSTIISIWEKAGKLDRAAILFQKLRSSGV 455

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
             D   Y  ++ AY + G++   + +L  +K    +PD I  +  I    +    ++   
Sbjct: 456 RIDEVLYQTMIVAYERTGLVAHAKRLLHELK----RPDNIPRDTAIAILARAGRIEEATW 511

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           VF+    ++E   +  F  MI  + K +       VF+KM  + Y P       ++  +G
Sbjct: 512 VFRQAFDAREVKDISVFGCMINLFSKNKKYANVVEVFEKMREVGYFPDSDVIALVLNAFG 571

Query: 238 YCDNVSRAREIFDELSKLG 256
                 +A  ++ ++ + G
Sbjct: 572 KLREFDKADALYRQMHEEG 590



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 115/243 (47%), Gaps = 13/243 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I++  K G+   A  LF ++R+SG R D  +Y  +I A+    ++   +A A    
Sbjct: 427 YSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAY----ERTGLVAHAKRLL 482

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++K     +P+ +  +  +   A+A  +++   +F++  ++    DI  +  +++ + K
Sbjct: 483 HELK-----RPDNIPRDTAIAILARAGRIEEATWVFRQAFDAREVKDISVFGCMINLFSK 537

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP- 192
           N     +  V  +M+     PD     L+++++GK + FDK + +++  MH +E    P 
Sbjct: 538 NKKYANVVEVFEKMREVGYFPDSDVIALVLNAFGKLREFDKADALYRQ-MH-EEGCVFPD 595

Query: 193 -TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
                M+  YG  +     E +F+K+ +         +  + ++Y   D ++ A  I + 
Sbjct: 596 EVHFQMLSLYGARKDFVMVESLFEKLDSNPNINKKELHLVVASIYERADRLNDASRIMNR 655

Query: 252 LSK 254
           ++K
Sbjct: 656 MNK 658


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 163/360 (45%), Gaps = 48/360 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G TR A+ L  ++     +P+  +YN +I A      K + +++A G F
Sbjct: 167 YGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALC----KYQLVSEAYGLF 222

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  KG+     ++VTY  L+     A  + +   L  E+    + P++YTYN ++DA 
Sbjct: 223 SEMTAKGIS---ADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDAL 279

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G +KE ++VL+ M     KPD+IT++ L+D Y       K + VF ++      P +
Sbjct: 280 CKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDV 339

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIF 249
            ++  +I  + K ++  +A  +F++M      P  +TY  +I   G C +  +S   ++ 
Sbjct: 340 HSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLID--GLCKSGRISYVWDLI 397

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL------- 302
           DE+   G    V T N++++  C NG    A  LF    + G+ P S T+ +L       
Sbjct: 398 DEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKG 457

Query: 303 ----------------------YK------AYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
                                 YK       + K  + E    +L +ME+NG VPN   F
Sbjct: 458 GRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAVTF 517



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 150/356 (42%), Gaps = 50/356 (14%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ +I  + K      A  LFSEM   G   D   Y  LI         A  L +A+G 
Sbjct: 201 MYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFC----IASKLKEAIGL 256

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +M  ++   PN+ TYNIL+ A  +   V +   +   + ++ + PD+ TY+ +MD Y 
Sbjct: 257 LNEMV-LKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYF 315

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
               +K+ + V + M      PD+ ++ +LI+ + K +  D+   +FK +      P + 
Sbjct: 316 LVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIV 375

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDN-------- 241
           T++S+I    K+   G+  YV+  +  M+      + ITY  +I   G C N        
Sbjct: 376 TYSSLIDGLCKS---GRISYVWDLIDEMRDRGIPANVITYNSLID--GLCKNGHLDRAIA 430

Query: 242 -----------------------------VSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
                                        +  A+E F +L   G  + V   N M+  +C
Sbjct: 431 LFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHC 490

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             GL  EA  +       G  P++ T+ ++  A  K +  +  +KLL++M   G++
Sbjct: 491 KQGLLEEALTMLSKMEENGCVPNAVTFDIIINALFKKDENDKAEKLLRQMICRGLL 546



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 145/328 (44%), Gaps = 9/328 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R Y   T  ++ LI  +  KGQ   A+    ++   G + D   Y  LI       D  
Sbjct: 122 KRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTR 181

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            A+       +K+ G    KPN+  YN ++ A  + + V +   LF E+    ++ D+ T
Sbjct: 182 GAIK----LVRKIDG-RLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVT 236

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++  +     +KE   +L+ M      P++ T+N+L+D+  K     + + V   ++
Sbjct: 237 YTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVML 296

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN-- 241
            +  KP + T+++++  Y       KA++VF  M+ M  TP   +Y  +I   G+C N  
Sbjct: 297 KACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILIN--GFCKNKM 354

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           V  A  +F E+ +      + T +++++  C +G  +    L +   + G+  +  TY  
Sbjct: 355 VDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNS 414

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVP 329
           L     K    +    L  +M+  GI P
Sbjct: 415 LIDGLCKNGHLDRAIALFNKMKDQGIRP 442



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 145/366 (39%), Gaps = 83/366 (22%)

Query: 55  AHLHTRDKA-KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH 113
           +H H++  + + +  A+  F +M  M R  P I+ +N +L + A+ ++     +L   L 
Sbjct: 28  SHFHSQPPSIQNVDDAVSQFNRMLCM-RHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLE 86

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
              + PD+ T N +++ +   G I    SVL+++     +P  ITF  LI     +   +
Sbjct: 87  LKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVN 146

Query: 174 --------------KMEQV-FKSLMHSK--------------------EKPTLPTFNSMI 198
                         K +QV + +L++                       KP +  +N++I
Sbjct: 147 KALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTII 206

Query: 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLG 256
               K +L  +A  +F +MTA   +   +TY  +I  YG+C    +  A  + +E+    
Sbjct: 207 DALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLI--YGFCIASKLKEAIGLLNEMVLKT 264

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEA--------------DLL------------------- 283
            +  V T N +++A C  G   EA              D++                   
Sbjct: 265 INPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQ 324

Query: 284 --FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
             F     MGVTPD  +Y +L   + K  M +    L K M Q  +VP        + T+
Sbjct: 325 HVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVP-------GIVTY 377

Query: 342 SSSLAG 347
           SS + G
Sbjct: 378 SSLIDG 383


>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 147/326 (45%), Gaps = 10/326 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + DT  YS LIA  GK G+   A+ LF EM+ +G  P   +Y  ++  +     K   + 
Sbjct: 227 LPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYF----KLGRVE 282

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           KALG  Q+MK  + C   + TY  L++   +A  V++  ++F  + +    PD+   N +
Sbjct: 283 KALGLVQEMKE-KGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNL 341

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++  GK G + +   +   M+S QC P+++T+N +I +  + +A  +  + F      KE
Sbjct: 342 INLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKA--RASEAFLWYEKMKE 399

Query: 188 KPTLP---TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
              +P   T++ +I  + K     KA  + ++M    + P    Y  +I   G       
Sbjct: 400 NGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEA 459

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A E+F EL +            M++     G  +EA  LF     +G  PD   Y  L  
Sbjct: 460 ANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMS 519

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
              +  M +    LL+ ME+NG  P+
Sbjct: 520 GMVRVGMTDEAHSLLRTMEENGCTPD 545



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 144/314 (45%), Gaps = 9/314 (2%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S+++ V+GK      A+ +F +++   C+P  + YN++I   +      K        + 
Sbjct: 163 SEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHE----LYN 218

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M     C P+ VTY+ L+ A  +    D   +LF E+ E+ L P    Y  ++  Y K 
Sbjct: 219 EMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKL 278

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G +++   ++  MK   C   + T+  LI   GK    ++   +F +++    KP +   
Sbjct: 279 GRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLI 338

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N++I   GKA     A  +F++M +++ TP+ +TY  +I      ++ +RA E F    K
Sbjct: 339 NNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIK--ALFESKARASEAFLWYEK 396

Query: 255 LGKDMKVS---TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + ++  V    T + +++ +C      +A LL E     G  P  + Y  L  A  KA  
Sbjct: 397 MKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKR 456

Query: 312 KELVQKLLKRMEQN 325
            E   +L + + +N
Sbjct: 457 YEAANELFQELREN 470



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 113/239 (47%), Gaps = 7/239 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+   +  +  YS LI    K  +   A+ L  EM   G  P P+ Y +LI A      K
Sbjct: 398 KENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINA----LGK 453

Query: 63  AKALAKALGYFQKMKGMERCK-PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           AK    A   FQ+++  E C   +   Y ++++   +   + +   LF E+ +    PD+
Sbjct: 454 AKRYEAANELFQELR--ENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDV 511

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           Y YN +M    + GM  E  S+L  M+ N C PD+ + N++++ + +        ++F  
Sbjct: 512 YAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTR 571

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           + +SK KP + ++N+++    +A +  +A  + ++M +  +    ITY  I+   G  D
Sbjct: 572 MKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEAVGKID 630



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 126/298 (42%), Gaps = 43/298 (14%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  + + LI ++GK G+   A+ LF EM +  C P+   YN +I A   ++ +A   ++A
Sbjct: 334 DVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARA---SEA 390

Query: 70  LGYFQKMKGMERCKPNIVTYNI-----------------------------------LLR 94
             +++KMK      P+  TY+I                                   L+ 
Sbjct: 391 FLWYEKMKE-NGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLIN 449

Query: 95  ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
           A  +A+  +  N LF+EL E+        Y  ++   GK G + E   + + MK   C P
Sbjct: 450 ALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNP 509

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK--AEY 212
           D+  +N L+    +    D+   + +++  +   P L + N  II  G AR  G   A  
Sbjct: 510 DVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHN--IILNGFARTGGPKGAIE 567

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
           +F +M   K  P  ++Y  ++           A ++  E++  G +  + T +++LEA
Sbjct: 568 MFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEA 625



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 100/244 (40%), Gaps = 1/244 (0%)

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           TY  L+    +A  + ++    +E+  S         + ++   GK  M+ +  S+  ++
Sbjct: 126 TYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIFYQI 185

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARL 206
           K  +CKP   T+N +I    +    +K+ +++  + +  +  P   T++++I  +GK   
Sbjct: 186 KGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGR 245

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
              A  +F +M      P+   Y  I+ +Y     V +A  +  E+ + G  + V T   
Sbjct: 246 DDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTE 305

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           +++     G   EA  +F N    G  PD      L     KA       KL + ME   
Sbjct: 306 LIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQ 365

Query: 327 IVPN 330
             PN
Sbjct: 366 CTPN 369



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 81/212 (38%), Gaps = 1/212 (0%)

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D  TY  ++    + GM+ EM   +  M  + C       + ++   GK +  +K   +F
Sbjct: 123 DSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIF 182

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM-TAMKYTPSFITYECIITMYGY 238
             +   K KPT  T+NSMI+   +     K   ++ +M       P  +TY  +I  +G 
Sbjct: 183 YQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGK 242

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
                 A  +FDE+ + G          +L  Y   G   +A  L +     G      T
Sbjct: 243 LGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYT 302

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y  L K   KA   E    +   M + G  P+
Sbjct: 303 YTELIKGVGKAGKVEEAYSIFMNMLKEGCKPD 334


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 154/338 (45%), Gaps = 7/338 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +IA + + G+   A+ +F EM + G  P+   YN +I  H+   D            
Sbjct: 198 YNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQML 257

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           Q  +     KPN+VTYN+LL    +A  +D+  AL  E+    + PD +TY+ + D   +
Sbjct: 258 QDGR-----KPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTR 312

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G  + M S+              T ++L++   K     K EQV + L+H+   PT   
Sbjct: 313 TGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAI 372

Query: 194 FNSMIINYGKAR-LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           +N++I  Y + R LQG A  +F++M +    P  ITY  +I      + ++ A ++  E+
Sbjct: 373 YNTLINGYCQVRDLQG-AFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEM 431

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            K G D  V T N +++AY   G   +   +  +  + G+  +  ++  + KA+ K    
Sbjct: 432 EKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKI 491

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
                +L  M    +VPN + +   ++ +  S    Q+
Sbjct: 492 PEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQA 529



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 148/327 (45%), Gaps = 11/327 (3%)

Query: 12  GIYSKLIAVMG--KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           G Y+  I + G  K G+   A  +   + ++G  P  ++YN LI  +   RD    L  A
Sbjct: 334 GAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRD----LQGA 389

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F++MK     +P+ +TYN L+    +   + +   L  E+ +S + P + T+N ++D
Sbjct: 390 FSIFEQMKS-RHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLID 448

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           AYG+ G +++  +VLS M+    K ++I+F  ++ ++ K     +   +   ++H    P
Sbjct: 449 AYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVP 508

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRARE 247
               +NS+I  Y ++    +A  + +KM +   + S  TY  ++   G C N  +  A E
Sbjct: 509 NAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLK--GLCKNSQIDEAEE 566

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +   L+  G    V + N ++ A C  G    A  L +  H   + P   TY  L  A  
Sbjct: 567 LIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSALG 626

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFF 334
            A     ++ L + M    + P+   +
Sbjct: 627 SAGRVHDMECLYQHMVHKNVEPSSSIY 653



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 138/337 (40%), Gaps = 5/337 (1%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   YS L   + + G +R  + LF E    G       Y   I  +   +D   A A
Sbjct: 297 LPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVII--GAYTCSILLNGLCKDGKVAKA 354

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           + +       G+    P    YN L+    Q R++    ++F+++    + PD  TYN +
Sbjct: 355 EQVLEMLVHTGL---VPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNAL 411

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++   K  MI E E ++  M+ +   P + TFN LID+YG+    +K   V   +     
Sbjct: 412 INGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGI 471

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           K  + +F S++  + K     +A  +   M      P+   Y  II  Y       +A  
Sbjct: 472 KSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFL 531

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + +++   G    + T N +L+  C N    EA+ L  N  N G+ PD  +Y  +  A  
Sbjct: 532 LVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACC 591

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
                +   +LL+ M +  I P  R +   L    S+
Sbjct: 592 NKGDTDRALELLQEMHKYDIRPTLRTYHPLLSALGSA 628



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 133/317 (41%), Gaps = 12/317 (3%)

Query: 21  MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME 80
           +G+    R A   F  +  +G RPD   +N  + A +   D    L +AL   ++M   E
Sbjct: 136 VGRHADVRAA---FGLLVAAGARPDTFAWNKAVQACVAAGD----LDEALAMLRRMGRSE 188

Query: 81  RCKP-NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
              P +  +YN+++    ++        +F E+ +  +AP+  TYN ++D + K G ++ 
Sbjct: 189 GAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEA 248

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
              +  +M  +  KP+++T+N+L+    +    D+   +   +      P    F   I+
Sbjct: 249 GFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPD--GFTYSIL 306

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGK 257
             G  R       +     ++K       Y C I + G C +  V++A ++ + L   G 
Sbjct: 307 FDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGL 366

Query: 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
               +  N ++  YC       A  +FE   +  + PD  TY  L     K  M    + 
Sbjct: 367 VPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAED 426

Query: 318 LLKRMEQNGIVPNKRFF 334
           L+  ME++G+ P+   F
Sbjct: 427 LVMEMEKSGVDPSVETF 443



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 89/200 (44%), Gaps = 11/200 (5%)

Query: 10  DTGIYSKLIA------VMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           D GI S +I+         K G+   A+ +  +M +    P+  VYN++I A++    ++
Sbjct: 468 DKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYI----ES 523

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
               +A    +KMK       +I TYN+LL+   +   +D+   L   L    L PD+ +
Sbjct: 524 GGTEQAFLLVEKMKS-SGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVS 582

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++ A    G       +L  M     +P + T++ L+ + G       ME +++ ++
Sbjct: 583 YNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMV 642

Query: 184 HSKEKPTLPTFNSMIINYGK 203
           H   +P+   + +   N  K
Sbjct: 643 HKNVEPSSSIYGTRCENESK 662



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 5/147 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + +  +Y+ +I    + G T  A  L  +M++SG       YN L+      ++     A
Sbjct: 507 VPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGL--CKNSQIDEA 564

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           + L Y    +G+   +P++V+YN ++ AC    + D+   L +E+H+  + P + TY+ +
Sbjct: 565 EELIYNLTNQGL---RPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPL 621

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKP 154
           + A G  G + +ME +   M     +P
Sbjct: 622 LSALGSAGRVHDMECLYQHMVHKNVEP 648



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/245 (19%), Positives = 89/245 (36%), Gaps = 33/245 (13%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P++ + N+LL +         V A F  L  +   PD + +N  + A    G + E  ++
Sbjct: 121 PSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALAM 180

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L RM  ++  P                                  P   ++N +I    +
Sbjct: 181 LRRMGRSEGAP---------------------------------PPDAFSYNVVIAGLWR 207

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           +     A  VF +M      P+ ITY  +I  +    ++     + D++ + G+   V T
Sbjct: 208 SGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVT 267

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N +L   C  G   E   L +   +  + PD  TY +L+   T+      +  L     
Sbjct: 268 YNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESL 327

Query: 324 QNGIV 328
           + G++
Sbjct: 328 KKGVI 332


>gi|224141335|ref|XP_002324029.1| predicted protein [Populus trichocarpa]
 gi|222867031|gb|EEF04162.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 139/278 (50%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           ++L     +  + R  P++  YN++LR   +A+  D  + LF E+    LAPD YTY+ +
Sbjct: 89  RSLALLDWINDIARYSPSVFAYNVVLRNVLRAKQWDHAHGLFDEMRNRALAPDRYTYSTL 148

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  +GK GM       L +M+ ++   D++ ++ LI+   K   + K   +F  L  S  
Sbjct: 149 ITHFGKAGMFDASLFWLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGI 208

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P L  +NSMI  +GKA+L  +A+ + ++M  +   P  ++Y  ++++Y   +    A  
Sbjct: 209 MPDLVAYNSMINVFGKAKLFREAKLLMKEMREVGVMPDTVSYSTLLSVYVENEKFVEALS 268

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F E+++    + ++T N M++ Y    +  EAD LF +   MG+ P+  +Y  L + Y 
Sbjct: 269 VFAEMNEAKCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYG 328

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 345
           +  +      L + M++  I  N   +   ++ +  SL
Sbjct: 329 ETELFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYGKSL 366



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 144/297 (48%), Gaps = 5/297 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +F  ++ SG  PD   YN++I        KAK   +
Sbjct: 175 GDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGIMPDLVAYNSMINVF----GKAKLFRE 230

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A    ++M+ +    P+ V+Y+ LL    +     +  ++F E++E+    D+ T N ++
Sbjct: 231 AKLLMKEMREVG-VMPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAKCPLDLTTCNVMI 289

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+  M KE + +   M+    +P+++++N L+  YG+ + F +   +F+ +     +
Sbjct: 290 DVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGETELFGEAIHLFRLMQKKDIE 349

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+N+MI  YGK+    KA  + Q+M      P+ ITY  II+++G    + RA  +
Sbjct: 350 QNVVTYNTMIKVYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIISIWGKAGKLDRAAML 409

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           F +L   G ++       M+ AY  +GL   A  L     +    P  +  K+L +A
Sbjct: 410 FQKLRSSGVEIDQVLYQTMIVAYERSGLVAHAKRLLHELKHPDSIPRETAIKILARA 466



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 143/295 (48%), Gaps = 5/295 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF EMRN    PD   Y+ LIT H     KA     +L + Q+M+  +R   ++V Y+ L
Sbjct: 129 LFDEMRNRALAPDRYTYSTLIT-HF---GKAGMFDASLFWLQQME-QDRVSGDLVLYSNL 183

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +  +  +  ++F  L  S + PD+  YN +++ +GK  + +E + ++  M+    
Sbjct: 184 IELSRKLCDYSKAISIFMRLKRSGIMPDLVAYNSMINVFGKAKLFREAKLLMKEMREVGV 243

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            PD ++++ L+  Y + + F +   VF  +  +K    L T N MI  YG+  +  +A+ 
Sbjct: 244 MPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAKCPLDLTTCNVMIDVYGQLDMAKEADR 303

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + K   +  V T N M++ Y 
Sbjct: 304 LFWSMRKMGIEPNVVSYNTLLRVYGETELFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYG 363

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
            +    +A  L +   N G+ P++ TY  +   + KA   +    L +++  +G+
Sbjct: 364 KSLEHEKATNLMQEMQNRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGV 418



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 153/329 (46%), Gaps = 5/329 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R    D   YS LI   GK G    +++   +M       D  +Y+ LI       D 
Sbjct: 134 RNRALAPDRYTYSTLITHFGKAGMFDASLFWLQQMEQDRVSGDLVLYSNLIELSRKLCDY 193

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +   L KE+ E  + PD  
Sbjct: 194 SKAIS----IFMRLKR-SGIMPDLVAYNSMINVFGKAKLFREAKLLMKEMREVGVMPDTV 248

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV + M   +C  D+ T N++ID YG+     + +++F S+
Sbjct: 249 SYSTLLSVYVENEKFVEALSVFAEMNEAKCPLDLTTCNVMIDVYGQLDMAKEADRLFWSM 308

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG+  L G+A ++F+ M       + +TY  +I +YG     
Sbjct: 309 RKMGIEPNVVSYNTLLRVYGETELFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYGKSLEH 368

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + GV  D   Y+ +
Sbjct: 369 EKATNLMQEMQNRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTM 428

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             AY ++ +    ++LL  ++    +P +
Sbjct: 429 IVAYERSGLVAHAKRLLHELKHPDSIPRE 457



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 152/328 (46%), Gaps = 10/328 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + DT  YS L++V  +  +   A+ +F+EM  + C  D +  N +I  +    D AK   
Sbjct: 244 MPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAKCPLDLTTCNVMIDVYGQL-DMAKEAD 302

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +     +KM G+E   PN+V+YN LLR   +     +   LF+ + +  +  ++ TYN +
Sbjct: 303 RLFWSMRKM-GIE---PNVVSYNTLLRVYGETELFGEAIHLFRLMQKKDIEQNVVTYNTM 358

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  YGK+   ++  +++  M++   +P+ IT++ +I  +GK    D+   +F+ L  S  
Sbjct: 359 IKVYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGV 418

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +     + +MI+ Y ++ L   A+ +  ++      P  I  E  I +      +  A  
Sbjct: 419 EIDQVLYQTMIVAYERSGLVAHAKRLLHELK----HPDSIPRETAIKILARAGRIEEATW 474

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F +    G+   +S    M++ +  N  P     +FE     G  PDS+   L+  AY 
Sbjct: 475 VFRQAFDAGEVKDISVFGCMVDLFSRNRKPANVIEVFEKMRGAGYFPDSNVIALVLNAYG 534

Query: 308 KANMKELVQKLLKRM-EQNGIVPNKRFF 334
           K +  E    L K M E+  + P++  F
Sbjct: 535 KLHEFEKADALYKEMQEEECVFPDEVHF 562


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 153/314 (48%), Gaps = 13/314 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  + K G TR A+    ++     +PD  +YN +I A      K + +++A G F
Sbjct: 167 YATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMC----KYQLVSEAYGLF 222

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M  ++    ++VTYN L+        + +   L  E+    + P++YTYN ++DA  K
Sbjct: 223 SEM-AVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCK 281

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +KE +SVL+ M     KPD+IT++ L+D Y       K + VF ++      P + T
Sbjct: 282 EGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHT 341

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDE 251
           +  +I  + K ++  +A  +F++M      P  +TY  +I   G C +  +S   ++ DE
Sbjct: 342 YTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLID--GLCKSGRISYVWDLIDE 399

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA-- 309
           +   G+   V T +++++  C NG    A  LF    +  + P+  T+ +L     K   
Sbjct: 400 MRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGR 459

Query: 310 --NMKELVQKLLKR 321
             + +E+ Q LL +
Sbjct: 460 LKDAQEVFQDLLTK 473



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 157/355 (44%), Gaps = 16/355 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R Y  DT   + LI  +  KGQ + A+    ++   G + +   Y  LI       D  
Sbjct: 122 KRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTR 181

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            A+     + +K+ G    KP++V YN ++ A  + + V +   LF E+    ++ D+ T
Sbjct: 182 AAIK----FLRKIDG-RLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVT 236

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++  +   G +KE   +L+ M      P++ T+N+L+D+  K     + + V   ++
Sbjct: 237 YNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVML 296

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN-- 241
            +  KP + T+++++  Y       KA++VF  M+ M  TP   TY  +I   G+C N  
Sbjct: 297 KACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILIN--GFCKNKM 354

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           V  A  +F E+ +      + T +++++  C +G  +    L +   + G   D  TY  
Sbjct: 355 VDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSS 414

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTD 356
           L     K    +    L  +M+   I PN       + TF+  L G   G    D
Sbjct: 415 LIDGLCKNGHLDRAIALFNKMKDQEIRPN-------IFTFTILLDGLCKGGRLKD 462



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 143/322 (44%), Gaps = 9/322 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD   Y+ LI      G+ + A+ L +EM      P+   YN L+ A L    K K    
Sbjct: 232 ADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDA-LCKEGKVKEAKS 290

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
            L    K       KP+++TY+ L+        V +   +F  +    + PD++TY  ++
Sbjct: 291 VLAVMLK----ACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILI 346

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + + KN M+ E  ++   M      P I+T++ LID   K      +  +   +    + 
Sbjct: 347 NGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQP 406

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAR 246
             + T++S+I    K     +A  +F KM   +  P+  T+   I + G C    +  A+
Sbjct: 407 ADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFT--ILLDGLCKGGRLKDAQ 464

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+F +L   G  + V T N M+  +C  GL  EA  +     + G  P++ T++ +  A 
Sbjct: 465 EVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIAL 524

Query: 307 TKANMKELVQKLLKRMEQNGIV 328
            K +  +  +KLL++M   G++
Sbjct: 525 FKKDENDKAEKLLRQMIARGLL 546



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 141/366 (38%), Gaps = 83/366 (22%)

Query: 55  AHLHTRDKA-KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH 113
           +H H++  + + +  A+  F +M  M R  P I+ +N +L + A+ ++     +L   L 
Sbjct: 28  SHFHSQPPSIQNVDDAVSQFNRMLCM-RHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLE 86

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR---- 169
              + PD+ T N +++ +   G I    SVL+++      PD +T N LI     +    
Sbjct: 87  LKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVK 146

Query: 170 -----------QAFDKMEQVFKSLMHSK--------------------EKPTLPTFNSMI 198
                      Q F   +  + +L++                       KP +  +N++I
Sbjct: 147 KALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTII 206

Query: 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLG 256
               K +L  +A  +F +M     +   +TY  +I  YG+C    +  A  + +E+    
Sbjct: 207 DAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLI--YGFCIVGKLKEAIGLLNEMVLKT 264

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEA--------------DLL------------------- 283
            +  V T N +++A C  G   EA              D++                   
Sbjct: 265 INPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQ 324

Query: 284 --FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
             F     MGVTPD  TY +L   + K  M +    L K M Q  +VP        + T+
Sbjct: 325 HVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVP-------GIVTY 377

Query: 342 SSSLAG 347
           SS + G
Sbjct: 378 SSLIDG 383



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 40/181 (22%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R   AD   YS LI  + K G    A+ LF++M++   R                   
Sbjct: 401 RDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIR------------------- 441

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
                                PNI T+ ILL    +   +     +F++L       ++Y
Sbjct: 442 ---------------------PNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVY 480

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN +++ + K G+++E  ++LS+M+ N C P+  TF  +I +  K+   DK E++ + +
Sbjct: 481 TYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQM 540

Query: 183 M 183
           +
Sbjct: 541 I 541


>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 147/326 (45%), Gaps = 10/326 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + DT  YS LIA  GK G+   A+ LF EM+ +G  P   +Y  ++  +     K   + 
Sbjct: 227 LPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYF----KLGRVE 282

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           KALG  Q+MK  + C   + TY  L++   +A  V++  ++F  + +    PD+   N +
Sbjct: 283 KALGLVQEMKE-KGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNL 341

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++  GK G + +   +   M+S QC P+++T+N +I +  + +A  +  + F      KE
Sbjct: 342 INLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKA--RASEAFLWYEKMKE 399

Query: 188 KPTLP---TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
              +P   T++ +I  + K     KA  + ++M    + P    Y  +I   G       
Sbjct: 400 NGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEA 459

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A E+F EL +            M++     G  +EA  LF     +G  PD   Y  L  
Sbjct: 460 ANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMS 519

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
              +  M +    LL+ ME+NG  P+
Sbjct: 520 GMVRVGMTDEAHSLLRTMEENGCTPD 545



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 144/314 (45%), Gaps = 9/314 (2%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S+++ V+GK      A+ +F +++   C+P  + YN++I   +      K        + 
Sbjct: 163 SEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHE----LYN 218

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M     C P+ VTY+ L+ A  +    D   +LF E+ E+ L P    Y  ++  Y K 
Sbjct: 219 EMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKL 278

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G +++   ++  MK   C   + T+  LI   GK    ++   +F +++    KP +   
Sbjct: 279 GRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLI 338

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N++I   GKA     A  +F++M +++ TP+ +TY  +I      ++ +RA E F    K
Sbjct: 339 NNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIK--ALFESKARASEAFLWYEK 396

Query: 255 LGKDMKVS---TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + ++  V    T + +++ +C      +A LL E     G  P  + Y  L  A  KA  
Sbjct: 397 MKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKR 456

Query: 312 KELVQKLLKRMEQN 325
            E   +L + + +N
Sbjct: 457 YEAANELFQELREN 470



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 113/239 (47%), Gaps = 7/239 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+   +  +  YS LI    K  +   A+ L  EM   G  P P+ Y +LI A      K
Sbjct: 398 KENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINA----LGK 453

Query: 63  AKALAKALGYFQKMKGMERCK-PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           AK    A   FQ+++  E C   +   Y ++++   +   + +   LF E+ +    PD+
Sbjct: 454 AKRYEAANELFQELR--ENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDV 511

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           Y YN +M    + GM  E  S+L  M+ N C PD+ + N++++ + +        ++F  
Sbjct: 512 YAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTR 571

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           + +SK KP + ++N+++    +A +  +A  + ++M +  +    ITY  I+   G  D
Sbjct: 572 MKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEAVGKID 630



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 126/298 (42%), Gaps = 43/298 (14%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  + + LI ++GK G+   A+ LF EM +  C P+   YN +I A   ++ +A   ++A
Sbjct: 334 DVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARA---SEA 390

Query: 70  LGYFQKMKGMERCKPNIVTYNI-----------------------------------LLR 94
             +++KMK      P+  TY+I                                   L+ 
Sbjct: 391 FLWYEKMKE-NGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLIN 449

Query: 95  ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
           A  +A+  +  N LF+EL E+        Y  ++   GK G + E   + + MK   C P
Sbjct: 450 ALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNP 509

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK--AEY 212
           D+  +N L+    +    D+   + +++  +   P L + N  II  G AR  G   A  
Sbjct: 510 DVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHN--IILNGFARTGGPKGAIE 567

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
           +F +M   K  P  ++Y  ++           A ++  E++  G +  + T +++LEA
Sbjct: 568 MFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEA 625



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 100/244 (40%), Gaps = 1/244 (0%)

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           TY  L+    +A  + ++    +E+  S         + ++   GK  M+ +  S+  ++
Sbjct: 126 TYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIFYQI 185

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARL 206
           K  +CKP   T+N +I    +    +K+ +++  + +  +  P   T++++I  +GK   
Sbjct: 186 KGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGR 245

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
              A  +F +M      P+   Y  I+ +Y     V +A  +  E+ + G  + V T   
Sbjct: 246 DDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTE 305

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           +++     G   EA  +F N    G  PD      L     KA       KL + ME   
Sbjct: 306 LIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQ 365

Query: 327 IVPN 330
             PN
Sbjct: 366 CTPN 369



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 81/212 (38%), Gaps = 1/212 (0%)

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D  TY  ++    + GM+ EM   +  M  + C       + ++   GK +  +K   +F
Sbjct: 123 DSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIF 182

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM-TAMKYTPSFITYECIITMYGY 238
             +   K KPT  T+NSMI+   +     K   ++ +M       P  +TY  +I  +G 
Sbjct: 183 YQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGK 242

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
                 A  +FDE+ + G          +L  Y   G   +A  L +     G      T
Sbjct: 243 LGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYT 302

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y  L K   KA   E    +   M + G  P+
Sbjct: 303 YTELIKGVGKAGKVEEAYSIFMNMLKEGCKPD 334


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 157/316 (49%), Gaps = 11/316 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G+TR A+ L   +  +  +P+  +YN +I +      K K + +A   F
Sbjct: 193 YGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMC----KVKLVNEAFDLF 248

Query: 74  QKM--KGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
            +M  KG+    P++VTY+ L+   C   +  D ++   K + E+I  PD+YT+N +++A
Sbjct: 249 SEMVSKGIS---PDVVTYSALISGFCILGKLKDAIDLFNKMILENI-KPDVYTFNILVNA 304

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K+G +KE ++V   M     KP+ +T+N L+D Y   +  +K + +F ++      P 
Sbjct: 305 FCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPD 364

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           + +++ MI  + K +   +A  +F++M      P  +TY  +I        +S A ++ D
Sbjct: 365 IQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVD 424

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           ++   G    + T N++L+A C      +A  L     + G  PD STY +L K   ++ 
Sbjct: 425 QMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSG 484

Query: 311 MKELVQKLLKRMEQNG 326
             E  +K+ + +   G
Sbjct: 485 KLEDARKVFEDLLVKG 500



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 160/356 (44%), Gaps = 46/356 (12%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ +I  M K      A  LFSEM + G  PD   Y+ALI+           L  A+  
Sbjct: 227 MYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFC----ILGKLKDAIDL 282

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F KM  +E  KP++ T+NIL+ A  +   + +   +F  + +  + P+  TYN +MD Y 
Sbjct: 283 FNKMI-LENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYC 341

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
               + + +S+ + M      PDI +++++I+ + K + FD+   +FK +      P + 
Sbjct: 342 LVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVV 401

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECI----------------- 232
           T++S+I    K+   G+  Y  Q +  M      P+  TY  I                 
Sbjct: 402 TYSSLIDGLSKS---GRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALL 458

Query: 233 ----------------ITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
                           I + G C +  +  AR++F++L   G ++ V     M++ +C+ 
Sbjct: 459 TKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVE 518

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           GL  EA  L     + G  PD+ TY+++  +  K +  ++ +KLL+ M   G+  N
Sbjct: 519 GLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLPLN 574



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 156/346 (45%), Gaps = 13/346 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y+ DT  ++ L   +  KGQ + A     ++   G   D   Y  LI    H   K    
Sbjct: 151 YVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLI----HGLCKVGET 206

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             AL   Q++ G    +PN+V YN ++ +  + + V++   LF E+    ++PD+ TY+ 
Sbjct: 207 RAALDLLQRVDG-NLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSA 265

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  +   G +K+   + ++M     KPD+ TFN+L++++ K     + + VF  +M   
Sbjct: 266 LISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQG 325

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            KP   T+NS++  Y   +   KA+ +F  M      P   +Y  +I  +        A 
Sbjct: 326 IKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAM 385

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +F E+ +      V T +++++    +G  + A  L +  H+ GV P+  TY  +  A 
Sbjct: 386 NLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDAL 445

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG-SQSG 351
            K +  +    LL + +  G  P+       + T+S  + G  QSG
Sbjct: 446 CKTHQVDKAIALLTKFKDKGFQPD-------ISTYSILIKGLCQSG 484



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/358 (20%), Positives = 147/358 (41%), Gaps = 48/358 (13%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ LF+ +      P    +N ++ + +    K+K     L   QKM+     KPN+V  
Sbjct: 69  AVSLFNRLLRRNTTPPAFEFNKILGSLV----KSKHYHTVLYLSQKME-FRGIKPNLVNC 123

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD-------------------- 129
           NIL+    Q   +    ++F ++ +    PD  T+  +                      
Sbjct: 124 NILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVA 183

Query: 130 --------AYGK--NGMIKEMES-----VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
                   +YG   +G+ K  E+     +L R+  N  +P+++ +N +IDS  K +  ++
Sbjct: 184 LGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNE 243

Query: 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
              +F  ++     P + T++++I  +        A  +F KM      P   T+  ++ 
Sbjct: 244 AFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVN 303

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
            +     +   + +FD + K G      T N++++ YC+     +A  +F      GV P
Sbjct: 304 AFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNP 363

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG-SQSG 351
           D  +Y ++   + K    +    L K M +  I+P+       + T+SS + G S+SG
Sbjct: 364 DIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPD-------VVTYSSLIDGLSKSG 414



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 106/254 (41%), Gaps = 12/254 (4%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           K N ++Y+          +VD   +LF  L      P  + +N ++ +  K+     +  
Sbjct: 47  KINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLY 106

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +  +M+    KP+++  N+LI+ + +         VF  ++     P   TF ++  + G
Sbjct: 107 LSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTL--SKG 164

Query: 203 KARLQGKAEYVF---QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
              L+G+ +  F    K+ A+ +    I+Y  +I  +G C  V   R   D L ++  ++
Sbjct: 165 LC-LKGQIQQAFLFHDKVVALGFHFDQISYGTLI--HGLC-KVGETRAALDLLQRVDGNL 220

Query: 260 ---KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
               V   N ++++ C   L  EA  LF    + G++PD  TY  L   +      +   
Sbjct: 221 VQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAI 280

Query: 317 KLLKRMEQNGIVPN 330
            L  +M    I P+
Sbjct: 281 DLFNKMILENIKPD 294



 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 13/228 (5%)

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+     +  N  + +  S+ +R+      P    FN ++ S  K + +  +  + + +
Sbjct: 52  SYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKM 111

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--D 240
                KP L   N +I  + +  L   A  VF K+  M Y P  IT+  +    G C   
Sbjct: 112 EFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSK--GLCLKG 169

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA-DLLFENSHNMGVTPDSSTY 299
            + +A    D++  LG      +   ++   C  G    A DLL     N+ V P+   Y
Sbjct: 170 QIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNL-VQPNVVMY 228

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
             +  +  K  +      L   M   GI P+       + T+S+ ++G
Sbjct: 229 NTIIDSMCKVKLVNEAFDLFSEMVSKGISPD-------VVTYSALISG 269


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 151/334 (45%), Gaps = 20/334 (5%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           + +I D   YS LI  +   G    AM +F E    G +    +YN L+          K
Sbjct: 350 KGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLV----------K 399

Query: 65  ALAK---ALGYFQKMKGM--ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
            L+K    L   Q MK M    C P+I TYN+++    +   +   N +  +       P
Sbjct: 400 GLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIP 459

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           DI+T+N ++D Y K   + +   +L  M S+   PD+IT+N L++   K +  D +   F
Sbjct: 460 DIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTF 519

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           K+++     P + T+N +I ++ K R   +A  +F++M     TP  +T   +I   G C
Sbjct: 520 KAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLIC--GLC 577

Query: 240 DN--VSRAREIFDELSKLGK-DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
            N  + +A E+F  + K  K     +  N M+ A+C     + A+ LF         PD+
Sbjct: 578 SNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDN 637

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            TY+++  +Y K    +L    L      G+VP+
Sbjct: 638 YTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPS 671



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 136/308 (44%), Gaps = 9/308 (2%)

Query: 25  GQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP 84
           G+   A+ L + M   GC  +   Y A+I+       K     +A   F +M     C P
Sbjct: 160 GRPTAALRLLNNMPGQGCEFNAVSYCAVISGFY----KENCQIEAYHLFDEMLKQGIC-P 214

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           +I+T+N L+    +  NV +   LF ++ +  + P+++T+N  +    + G I E   +L
Sbjct: 215 DILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLL 274

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             + S    PD+I++N LI  + K     + E     +++S  +P   T+N++I  + KA
Sbjct: 275 ESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKA 334

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVS 262
            +   A+ + +      + P   TY  +I   G C+  +++RA  +F E  + G    + 
Sbjct: 335 GMMQNADKILRDAMFKGFIPDEFTYSSLIN--GLCNDGDMNRAMAVFYEAMEKGFKHSII 392

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
             N +++     GL  +A  L ++    G +PD  TY L+     K         +L   
Sbjct: 393 LYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDA 452

Query: 323 EQNGIVPN 330
              G +P+
Sbjct: 453 IAKGCIPD 460



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 138/317 (43%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  +I+   K+     A  LF EM   G  PD   +N LI    H   K   + ++   F
Sbjct: 184 YCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLI----HVLCKKGNVQESEKLF 239

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+     C PN+ T+NI ++   +   +D+   L + +    L PD+ +YN ++  + K
Sbjct: 240 SKVMKRGVC-PNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCK 298

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +  + E E  L +M ++  +P+  T+N +I+ + K       +++ +  M     P   T
Sbjct: 299 HSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFT 358

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           ++S+I          +A  VF +     +  S I Y  ++        V +A ++  ++ 
Sbjct: 359 YSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMM 418

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G    + T N ++   C  G  ++A+ +  ++   G  PD  T+  L   Y K    +
Sbjct: 419 EHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMD 478

Query: 314 LVQKLLKRMEQNGIVPN 330
              ++L  M  +GI P+
Sbjct: 479 KAIEILDTMLSHGITPD 495



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 146/341 (42%), Gaps = 5/341 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++KLI V+ KKG  + +  LFS++   G  P+   +N  I        +  A+ +A
Sbjct: 215 DILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLC----RKGAIDEA 270

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               + +   E   P++++YN L+    +   + +      ++  S + P+ +TYN +++
Sbjct: 271 ARLLESIVS-EGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIIN 329

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            + K GM++  + +L         PD  T++ LI+        ++   VF   M    K 
Sbjct: 330 GFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKH 389

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           ++  +N+++    K  L  +A  + + M     +P   TY  ++        +S A  I 
Sbjct: 390 SIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGIL 449

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           ++    G    + T N +++ YC      +A  + +   + G+TPD  TY  L     KA
Sbjct: 450 NDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKA 509

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
              + V    K M + G  PN   +   +E+F      S++
Sbjct: 510 RKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEA 550



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 129/313 (41%), Gaps = 6/313 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++  + K G    A  + ++    GC PD   +N LI  +   R+    + KA
Sbjct: 425 DIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRN----MDKA 480

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +     M       P+++TYN LL    +AR +D V   FK + E    P+I TYN +++
Sbjct: 481 IEILDTMLS-HGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIE 539

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS-KEK 188
           ++ K+  + E   +   MK+    PDI+T   LI         DK  ++F ++    K  
Sbjct: 540 SFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFS 599

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
            +   FN MI  + +      AE +F KM      P   TY  +I  Y    N+  A   
Sbjct: 600 YSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTF 659

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             E    G     +T   +L   C+    +EA ++       G+ P+             
Sbjct: 660 LLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPEEVNSIFEADKKEV 719

Query: 309 ANMKELVQKLLKR 321
           A  K +V+ LLK+
Sbjct: 720 AAPKIVVEYLLKK 732



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 145/350 (41%), Gaps = 32/350 (9%)

Query: 12  GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT----------------- 54
           G+Y  ++   G+KG+ + A+ +F  M    C P    YNA++                  
Sbjct: 77  GVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMR 136

Query: 55  ---------AHLHT-RDKAKAL----AKALGYFQKMKGMERCKPNIVTYNILLRACAQAR 100
                     + HT R K+  +      AL     M G + C+ N V+Y  ++    +  
Sbjct: 137 MKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPG-QGCEFNAVSYCAVISGFYKEN 195

Query: 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
              +   LF E+ +  + PDI T+N ++    K G ++E E + S++      P++ TFN
Sbjct: 196 CQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFN 255

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
           + I    ++ A D+  ++ +S++     P + ++N++I  + K     +AE    KM   
Sbjct: 256 IFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNS 315

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
              P+  TY  II  +     +  A +I  +    G      T ++++   C +G    A
Sbjct: 316 GVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRA 375

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +F  +   G       Y  L K  +K  +     +L+K M ++G  P+
Sbjct: 376 MAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPD 425



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/284 (21%), Positives = 121/284 (42%), Gaps = 10/284 (3%)

Query: 58  HTRDKAKALAKALGYFQKMKGMERC----KPNIVT------YNILLRACAQARNVDQVNA 107
           HT +  K + + LG   K + ME      + N+ +      Y  ++R   +   V +   
Sbjct: 38  HTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVN 97

Query: 108 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
           +F+ +      P + +YN +M+   + G   +   V  RMK     PD+ T  + + S+ 
Sbjct: 98  VFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFC 157

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
                    ++  ++     +    ++ ++I  + K   Q +A ++F +M      P  +
Sbjct: 158 ITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDIL 217

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           T+  +I +     NV  + ++F ++ K G    + T N  ++  C  G   EA  L E+ 
Sbjct: 218 TFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESI 277

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
            + G+TPD  +Y  L   + K +     +  L +M  +G+ PN+
Sbjct: 278 VSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNE 321


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 151/317 (47%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I  + K      A+ LF  MR+ G  P    YN+LI    ++    +A       F
Sbjct: 247 YSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASI----LF 302

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M      KP++VT++IL+ A  +   V +  ++F ++ +  + PDI TY+ ++    K
Sbjct: 303 KEMLEWNM-KPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCK 361

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           + + KE  ++L+ M S   +PD++TF++ +D + K+    + + +   ++    +P + T
Sbjct: 362 SSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVT 421

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS++  Y       +A  VF  M      P  ++Y  +I  Y   + +  A+++FDE+S
Sbjct: 422 YNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMS 481

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G      T   ++   C  G P  A  LF+   + G  PD  TY  L   + K    +
Sbjct: 482 HKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLD 541

Query: 314 LVQKLLKRMEQNGIVPN 330
               L + ++++ + PN
Sbjct: 542 EALALFEALKKSQLKPN 558



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 153/317 (48%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  M   GQ + A  LF EM     +PD   ++ L+ A      K   + +AL  F
Sbjct: 282 YNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALC----KEGVVLEALSVF 337

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM  +   +P+IVTY+ L+    ++    + + L  E+    + PD+ T++  +D + K
Sbjct: 338 GKMIQIAM-EPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCK 396

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            GM+ E +S+++ M     +P+++T+N L+D Y      D+  +VF  +++    P + +
Sbjct: 397 KGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLS 456

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N +I  Y K+    +A+ +F +M+    TP+ IT+  +I+          A+E+F ++ 
Sbjct: 457 YNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMG 516

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    + T + +L  +C +G   EA  LFE      + P+    K+L     KA   E
Sbjct: 517 SHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLE 576

Query: 314 LVQKLLKRMEQNGIVPN 330
             ++L   +    + P+
Sbjct: 577 DAKELFSSLSIEELQPD 593



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 143/286 (50%), Gaps = 5/286 (1%)

Query: 46  PSVY-NALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQ 104
           P+VY + +I   L    K  A   A+ + +KM  ++ C+P +V+Y+I++ +  + R V++
Sbjct: 207 PTVYTHTMIVNGLCKIGKTSA---AIVWMKKMVELD-CEPEVVSYSIIIDSLCKNRLVNE 262

Query: 105 VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164
              LF  +    ++P + TYN ++     +G  K+   +   M     KPD++TF++L+D
Sbjct: 263 AVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVD 322

Query: 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 224
           +  K     +   VF  ++    +P + T++S+I    K+ L  ++  +  +M +    P
Sbjct: 323 ALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRP 382

Query: 225 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 284
             +T+   + ++     VS A+ I + + + G    V T N++++ YC++    EA  +F
Sbjct: 383 DVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVF 442

Query: 285 ENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +   N G  PD  +Y +L K Y K+   +  ++L   M   G+ PN
Sbjct: 443 DIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPN 488



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 130/288 (45%), Gaps = 9/288 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   +S L+  + K+G    A+ +F +M      PD   Y++LI    H   K+    ++
Sbjct: 313 DVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLI----HGVCKSSLWKES 368

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                +M      +P++VT++I +    +   V +  ++   + E  L P++ TYN +MD
Sbjct: 369 STLLNEMLS-RNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMD 427

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y  +  + E   V   M +  C PD++++N+LI  Y K +  D+ +Q+F  + H    P
Sbjct: 428 GYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTP 487

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRARE 247
              T  ++I    +A     A+ +F+KM +    P  ITY  +++  G+C   ++  A  
Sbjct: 488 NSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLS--GFCKHGHLDEALA 545

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           +F+ L K            +L   C  G   +A  LF +     + PD
Sbjct: 546 LFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEELQPD 593



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/347 (19%), Positives = 134/347 (38%), Gaps = 76/347 (21%)

Query: 59  TRDKAKA-----LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE-- 111
            RDK K         AL YF +M  M    P I  +N LL A  + ++ D V +++++  
Sbjct: 73  VRDKCKGGSFSNFDDALAYFNQMVHMNP-FPCITQFNQLLAALVRMKHYDSVVSIYRKME 131

Query: 112 -------------------------LHESILA--------PDIYTYNGVMDAYGKNGMIK 138
                                    L  S+L         P I T+N +++     G I 
Sbjct: 132 FFGVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIV 191

Query: 139 E----MESVLSR-------------------------------MKSNQCKPDIITFNLLI 163
           E    ++ ++SR                               M    C+P++++++++I
Sbjct: 192 EAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIII 251

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           DS  K +  ++   +F  +      PT+ T+NS+I     +    +A  +F++M      
Sbjct: 252 DSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMK 311

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
           P  +T+  ++        V  A  +F ++ ++  +  + T ++++   C + L  E+  L
Sbjct: 312 PDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTL 371

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                +  + PD  T+ +    + K  M    Q ++  M + G+ PN
Sbjct: 372 LNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPN 418



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 32/155 (20%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALGY------------------ 72
           +F  M N GC PD   YN LI  +  +   D+AK L   + +                  
Sbjct: 441 VFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLC 500

Query: 73  -----------FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
                      F+KM G   C P+++TY+ LL    +  ++D+  ALF+ L +S L P+ 
Sbjct: 501 QAGRPYAAKELFKKM-GSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNH 559

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
                ++    K G +++ + + S +   + +PD+
Sbjct: 560 VICKILLGGMCKAGKLEDAKELFSSLSIEELQPDV 594


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 166/343 (48%), Gaps = 15/343 (4%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  +  +Y+ LI  + K G+  +A+ L +EM   G   D   YN L+T   ++   + A 
Sbjct: 172 YEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDA- 230

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A+ L    K        P++VT+  L+    +  N+D+   L+KE+ +S + P+  TYN 
Sbjct: 231 ARMLRDMMK----RSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNS 286

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++    +G + + +     M S  C P+++T+N LI  + K +  D+  ++F+ +    
Sbjct: 287 IINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEG 346

Query: 187 EKPTLPTFNSMIINY---GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN-- 241
               + T+N++I  Y   GK R+   A  +F  M + + TP  IT+ CI+ ++G C N  
Sbjct: 347 FNADIFTYNTLIHGYCQVGKLRV---ALDIFCWMVSRRVTPDIITH-CIL-LHGLCVNGE 401

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +  A   FD++ +  K + +   N M+   C      +A  LF      GV PD+ TY +
Sbjct: 402 IESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTI 461

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           +     K   +    +L++RM++ GI+       + LE  SSS
Sbjct: 462 MILGLCKNGPRREADELIRRMKEEGIICQMNAEDDHLEEHSSS 504



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 115/277 (41%), Gaps = 1/277 (0%)

Query: 54  TAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH 113
           T  +H   +   L+ AL    KM  +   +P+IVT+  LL        +    +L   + 
Sbjct: 110 TILIHCFCRCSRLSFALSVLGKMMKLGY-EPSIVTFGSLLHGFCLVNRIGDAFSLVILMV 168

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
           +S   P++  YN ++D   KNG +     +L+ M+      D++T+N L+        + 
Sbjct: 169 KSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWS 228

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
              ++ + +M     P + TF ++I  + K     +A+ ++++M      P+ +TY  II
Sbjct: 229 DAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSII 288

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
                   +  A++ FD ++  G    V T N ++  +C   +  E   LF+     G  
Sbjct: 289 NGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFN 348

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            D  TY  L   Y +     +   +   M    + P+
Sbjct: 349 ADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPD 385



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/278 (19%), Positives = 108/278 (38%), Gaps = 35/278 (12%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+IV +  LL A A  R  + V    +++    ++ D+Y++  ++  + +   +    SV
Sbjct: 69  PSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSV 128

Query: 144 LSRMKSNQCKPDIITF-----------------------------------NLLIDSYGK 168
           L +M     +P I+TF                                   N LID   K
Sbjct: 129 LGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCK 188

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
               +   ++   +        + T+N+++     +     A  + + M      P  +T
Sbjct: 189 NGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVT 248

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
           +  +I ++    N+  A+E++ E+ +   D    T N+++   CM+G   +A   F+   
Sbjct: 249 FTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMA 308

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           + G  P+  TY  L   + K  M +   KL +RM   G
Sbjct: 309 SKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEG 346



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 63/156 (40%)

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
           F+    +F  ++HS+  P++  F  ++      R      Y  QKM     +    ++  
Sbjct: 52  FEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTI 111

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           +I  +  C  +S A  +  ++ KLG +  + T  ++L  +C+     +A  L       G
Sbjct: 112 LIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSG 171

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
             P+   Y  L     K     +  +LL  ME+ G+
Sbjct: 172 YEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGL 207



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 78/197 (39%), Gaps = 4/197 (2%)

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           M  +Q  P I+ F  L+ +    + ++ +    + +        L +F  +I  + +   
Sbjct: 62  MVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSR 121

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTL 264
              A  V  KM  + Y PS +T+  +  ++G+C  + +  A  +   + K G +  V   
Sbjct: 122 LSFALSVLGKMMKLGYEPSIVTFGSL--LHGFCLVNRIGDAFSLVILMVKSGYEPNVVVY 179

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N +++  C NG    A  L       G+  D  TY  L      +       ++L+ M +
Sbjct: 180 NTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMK 239

Query: 325 NGIVPNKRFFLEALETF 341
             I P+   F   ++ F
Sbjct: 240 RSINPDVVTFTALIDVF 256


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 153/327 (46%), Gaps = 17/327 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS +I  + K      A+ L +EM+     P+   YN+LI            L K 
Sbjct: 202 DVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLI----------DGLCK- 250

Query: 70  LGYFQKMKGME------RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           LG ++K+K +          PN+ T++IL+    +   V+  + + + + E  + PDI T
Sbjct: 251 LGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIIT 310

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ +MD Y   G +     V + ++    KP+I ++++LI+ Y K++   K  Q+F  + 
Sbjct: 311 YSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEIS 370

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
               KP   T+++++    +    G A+ +F +M  +  TP    +  ++  Y     V 
Sbjct: 371 QKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVE 430

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  +F +L +  +D  +S    ++   C N    EA  +FE   ++G+ PD  TY ++ 
Sbjct: 431 EAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMI 490

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
             + +  + + V+ +L++ME NG   N
Sbjct: 491 TGFCREGLFDEVKGILRKMEDNGCPAN 517



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 153/315 (48%), Gaps = 10/315 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEM-RNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           ++ L+  +  + +   A+ LF ++ R   C P+  +Y  ++   L  R   +   K L  
Sbjct: 135 FNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNG-LSKRGHTE---KTLSL 190

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            + M+     KP++ TY+I++ A  +  N+D    L  E+ +  + P+I+TYN ++D   
Sbjct: 191 LRIME-QGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLC 249

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G  ++++++LS M +    P++ TF++LID   K    +  ++V + ++    +P + 
Sbjct: 250 KLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDII 309

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFD 250
           T+++++  Y       +A  VF  +      P+  +Y  +I   GYC   N+++A ++F 
Sbjct: 310 TYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILIN--GYCKKKNLAKAMQLFG 367

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+S+ G      T + +L      G   +A  +F+    +G TPD   +  L   Y K  
Sbjct: 368 EISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYG 427

Query: 311 MKELVQKLLKRMEQN 325
           + E    L  ++E+N
Sbjct: 428 LVEEAMLLFSKLERN 442



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 136/320 (42%), Gaps = 10/320 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +SKL   M         + LF EMR  G     S+ N ++T     R +       L  +
Sbjct: 65  FSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILN-IVTNSYCLRHRIDCAFSVLPIY 123

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL-HESILAPDIYTYNGVMDAYG 132
            K  G+     N+VT+N LL        V     LFK+L  E I  P+   Y  VM+   
Sbjct: 124 LK-TGIPF---NVVTFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLS 179

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G  ++  S+L  M+    KPD+ T++++ID+  K    D    +   +      P + 
Sbjct: 180 KRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIF 239

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFD 250
           T+NS+I    K     K + +  +M  +   P+  T+  +I   G C    V  A E+  
Sbjct: 240 TYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILID--GLCKEGKVEDADEVMR 297

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            + + G +  + T +A+++ YC+ G    A  +F    + G+ P+  +Y +L   Y K  
Sbjct: 298 HMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKK 357

Query: 311 MKELVQKLLKRMEQNGIVPN 330
                 +L   + Q G+ P+
Sbjct: 358 NLAKAMQLFGEISQKGLKPD 377



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 144/326 (44%), Gaps = 9/326 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ+    +   Y+ LI  + K GQ      L SEM N    P+   ++ LI   L    K
Sbjct: 230 KQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDG-LCKEGK 288

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +   + + +  + KG+E   P+I+TY+ ++        VD+   +F  L +  + P+I+
Sbjct: 289 VEDADEVMRHMIE-KGVE---PDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIF 344

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ +++ Y K   + +   +   +     KPD +T++ ++    +       +++F  +
Sbjct: 345 SYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEM 404

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--D 240
           +     P +   ++++  Y K  L  +A  +F K+   +   +   Y  +I   G C  D
Sbjct: 405 LRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVIN--GLCKND 462

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            V  A  IF++L  +G    V T N M+  +C  GL  E   +     + G   ++ TY 
Sbjct: 463 RVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYN 522

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNG 326
           ++ + + ++N    +   +K M   G
Sbjct: 523 VIMQGFFRSNKISEIVSFMKEMAGRG 548



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 129/280 (46%), Gaps = 11/280 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS ++     +GQ   A  +F+ +R+ G +P+   Y+ LI  +     K K LAKA
Sbjct: 307 DIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYC----KKKNLAKA 362

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +  F ++  KG+   KP+ VTY+ +L    +   +     +F E+      PDI  ++ +
Sbjct: 363 MQLFGEISQKGL---KPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTL 419

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  Y K G+++E   + S+++ N+   +I  + ++I+   K     +   +F+ L     
Sbjct: 420 LFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGL 479

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P + T+N MI  + +  L  + + + +KM       + ITY  I+  +   + +S    
Sbjct: 480 IPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISEIVS 539

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
              E++  G     +T   ++     N  P+  D++ ++S
Sbjct: 540 FMKEMAGRGFSFDATTTGVLINVLKEN--PSIVDMIPDHS 577


>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 732

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 158/347 (45%), Gaps = 14/347 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS  I+   KKGQ   A+ L  EM   G  P+   Y  +I+A    R + +   +A
Sbjct: 360 DVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISA-CAKRGRWR---EA 415

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +   Q+M+      P+++ Y+  + ACAQA   +Q   L +E+  + L P++ +YN  +D
Sbjct: 416 IDLLQEMQA-HGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAID 474

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A  K G  K    +L  M ++   PD+IT++ +I S    + +++   +F+ +      P
Sbjct: 475 ACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGITP 534

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + + N+ I    +     +A  V  +M  M   P  I+Y   I     C    R +EI 
Sbjct: 535 DVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDA---CAKGDRWKEII 591

Query: 250 D---ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           D   E+S +G      +    + A  ++GL  EA +L  +   +G++PD  TY     A 
Sbjct: 592 DLLREMSTVGLTPDAISYRFAMSACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINAC 651

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSA 353
            K    +    LL++M   G+ P+   F  A++   +   G Q G+A
Sbjct: 652 AKGGRWKEATVLLRQMPTFGLAPDVNSFNAAIDACGN---GDQWGTA 695



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 153/353 (43%), Gaps = 13/353 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +YS  I+   K GQ   A+ L  EM   G  PD   Y+ +I A      K      A   
Sbjct: 258 VYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVITYSTVIDACA----KRGQWEPAFRL 313

Query: 73  FQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
             +M  KG+     NI+TY+I++ ACA+    ++  AL +E+ E+ +APD+ TY+  + A
Sbjct: 314 LMEMPTKGV---VANIITYSIVIGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISA 370

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             K G  +E   +L  M      P+ I++ ++I +  KR  + +   + + +      P 
Sbjct: 371 CAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPD 430

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           +  +++ I    +A    +A ++ ++M A   TP+ I+Y   I           A E+  
Sbjct: 431 VINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLR 490

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+   G    V T +A++ +  M     EA  LF      G+TPD  +      A  +  
Sbjct: 491 EMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGG 550

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRSLST 363
             E    +L  M   G+VP+   +  A++    + A         DL R +ST
Sbjct: 551 WWEEALDVLGEMPTMGLVPDAISYRTAID----ACAKGDRWKEIIDLLREMST 599



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 152/348 (43%), Gaps = 24/348 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D+  YS  IA  G   Q   A+ L + M   G  PD   Y++ I A      K     +A
Sbjct: 185 DSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTYSSAIAACA----KVSRWKEA 240

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +G  + MKG +  KPN++ Y+  + AC +    +    L KE+    LAPD+ TY+ V+D
Sbjct: 241 VGLLRSMKG-QGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVITYSTVID 299

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A  K G  +    +L  M +     +IIT++++I +  K   +++   + + +  +   P
Sbjct: 300 ACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQENGVAP 359

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T++S I    K     +A  + ++M     TP+ I+Y  +I+    C    R RE  
Sbjct: 360 DVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISA---CAKRGRWREAI 416

Query: 250 D---ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           D   E+   G    V   +A ++A        +A  L       G+TP+  +Y     A 
Sbjct: 417 DLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDAC 476

Query: 307 TKANMKELVQKLLKRMEQNGIVPN-------------KRFFLEALETF 341
            K    ++  +LL+ M  +G+ P+              R + EAL+ F
Sbjct: 477 AKTGRSKIAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLF 524



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 118/280 (42%), Gaps = 7/280 (2%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           KAL    +M+  +  KP+   Y+  + AC  AR  ++   L   +      PD+ TY+  
Sbjct: 169 KALDVLDRMQ-EQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTYSSA 227

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           + A  K    KE   +L  MK    KP++I ++  I +  K   ++    + K +     
Sbjct: 228 IAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGL 287

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQ---KMTAMKYTPSFITYECIITMYGYCDNVSR 244
            P + T++++I    K   +G+ E  F+   +M       + ITY  +I           
Sbjct: 288 APDVITYSTVIDACAK---RGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEE 344

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  +  E+ + G    V T ++ + A    G   EA  L       GVTP++ +Y ++  
Sbjct: 345 AVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVIS 404

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           A  K         LL+ M+ +G+ P+   +  A++  + +
Sbjct: 405 ACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQA 444



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 98/227 (43%), Gaps = 7/227 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS +IA      Q   A+ LF EM+  G  PD    N  I A        +AL   
Sbjct: 500 DVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEAL-DV 558

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           LG    M  +    P+ ++Y   + ACA+     ++  L +E+    L PD  +Y   M 
Sbjct: 559 LGEMPTMGLV----PDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMS 614

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A   +G+ KE   +L  M +    PD++T+N  I++  K   + +   + + +      P
Sbjct: 615 ACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAP 674

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
            + +FN+ I   G     G A  V  +M A+  +P+  TY  +  MY
Sbjct: 675 DVNSFNAAIDACGNGDQWGTAVEVLFEMRALGVSPNEATY--LTAMY 719


>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 161/357 (45%), Gaps = 41/357 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  YS LI+  GK  +   A  LF EM+ +G  P   +Y  ++  +     K   +  A
Sbjct: 229 DTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYF----KLNKVEAA 284

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L   ++MKG + C P + TY  L++   +   VD   +LF  + +    PD+   N +++
Sbjct: 285 LRLVEEMKG-KGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLIN 343

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA--------FDKME----- 176
             G+ G +++   +  +M S QC P+++T+N +I +  + +A        F+KM+     
Sbjct: 344 ILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIA 403

Query: 177 -----------------QVFKSL-----MHSKEKPTLP-TFNSMIINYGKARLQGKAEYV 213
                            +V K+L     M  K  P  P  + S+I + G+A+    A  +
Sbjct: 404 PSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANEL 463

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           FQ++       S   Y  +I  +G C  +S A ++F E  KLG    V T NA++     
Sbjct: 464 FQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIR 523

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            G+  EA  L  N    G TPD  ++ ++     K    +   ++  +M+++ I+P+
Sbjct: 524 AGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPD 580



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 146/314 (46%), Gaps = 6/314 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y++LI  +GK G+   A  LF  M   GC+PD  + N LI    +   +A  L  AL  F
Sbjct: 303 YTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLI----NILGRAGRLEDALKLF 358

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL-FKELHESILAPDIYTYNGVMDAYG 132
            KM  ++ C PN+VTYN +++A  +++      AL F+++  + +AP  +TY  ++D + 
Sbjct: 359 GKMDSLQ-CAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFC 417

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K   +++   +L  M      P    +  LIDS G+ + ++   ++F+ L  +  + +  
Sbjct: 418 KTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSAR 477

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            +  MI ++G       A  +F +   +  +P   TY  +++       +  A  +   +
Sbjct: 478 VYAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNM 537

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            + G    + + N +L      G P  A  +F       + PD+ +Y  +    ++A M 
Sbjct: 538 RENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMF 597

Query: 313 ELVQKLLKRMEQNG 326
           E+  KL++ M+  G
Sbjct: 598 EMAAKLMREMKLKG 611



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 132/316 (41%), Gaps = 38/316 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +S+++ ++GK      A+ +F +++   C P  +VYN LI   +H     K        +
Sbjct: 162 WSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHE----LY 217

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++     C P+ +TY+ L+ A  +    D    LF E+ E+ L P    Y  ++  Y K
Sbjct: 218 NEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFK 277

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              ++    ++  MK   C P + T+  LI   GK    D    +F +++    KP +  
Sbjct: 278 LNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVL 337

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            N++I   G+A     A  +F KM +++  P+ +TY  +I            + IF+  +
Sbjct: 338 INNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVI------------KAIFESKA 385

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
                                   +EA L FE     G+ P S TY +L   + K N  E
Sbjct: 386 P----------------------ASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVE 423

Query: 314 LVQKLLKRMEQNGIVP 329
               LL+ M++ G  P
Sbjct: 424 KALLLLEEMDEKGFPP 439



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 7/228 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    K  +   A+ L  EM   G  P P+ Y +LI     +  +AK    A   F
Sbjct: 409 YAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLI----DSLGRAKRYEAANELF 464

Query: 74  QKMKGMERC-KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           Q++K  E C + +   Y ++++       +     LF E  +   +PD+YTYN +M    
Sbjct: 465 QELK--ENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMI 522

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + GMI E  S++  M+ N C PDI + N++++   K     +  ++F  +  S+  P   
Sbjct: 523 RAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAV 582

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           ++N+++    +A +   A  + ++M    +    ITY  I+   G  D
Sbjct: 583 SYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDSITYSSILEAVGKVD 630



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 127/303 (41%), Gaps = 53/303 (17%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  + + LI ++G+ G+   A+ LF +M +  C P+   YN +I A   +  KA A   A
Sbjct: 334 DVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFES--KAPASEAA 391

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L +F+KMK      P+  TY IL+    +   V++   L +E+ E    P    Y  ++D
Sbjct: 392 L-WFEKMKA-NGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLID 449

Query: 130 AYGKNGMIKEMESVLSRMKSN-----------------------------------QCKP 154
           + G+    +    +   +K N                                    C P
Sbjct: 450 SLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEXEKLGCSP 509

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           D+ T+N L+    +    D+   + +++  +   P + + N ++    K     +A  +F
Sbjct: 510 DVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMF 569

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS-------TLNAM 267
            KM   +  P  ++Y  I++       +SRA  +F+  +KL ++MK+        T +++
Sbjct: 570 TKMKESEIMPDAVSYNTILSC------LSRA-GMFEMAAKLMREMKLKGFEYDSITYSSI 622

Query: 268 LEA 270
           LEA
Sbjct: 623 LEA 625



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 99/244 (40%), Gaps = 1/244 (0%)

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           TY  L+R   ++  VD++    +++  S  +     ++ ++   GK  M+ +  SV  ++
Sbjct: 126 TYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVFYQI 185

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARL 206
           K  +C P    +N LI         +K+ +++  +       P   T++++I  +GK   
Sbjct: 186 KGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGKLER 245

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
              A  +F +M      P+   Y  I+ MY   + V  A  + +E+   G    V T   
Sbjct: 246 YDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTE 305

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           +++     G   +A  LF N    G  PD      L     +A   E   KL  +M+   
Sbjct: 306 LIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQ 365

Query: 327 IVPN 330
             PN
Sbjct: 366 CAPN 369


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 147/320 (45%), Gaps = 11/320 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G T  A+ L   M    C+PD  +Y ++I +      K + + +A   F
Sbjct: 164 YGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLC----KDRQVTEAFNLF 219

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M G +   P+I TY  L+ A         V  L  ++  S + PD+  ++ V+DA  K
Sbjct: 220 SQMVG-QGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCK 278

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + E   ++  M     +PD++T+  L+D +  +   D+  +VF  ++     P + +
Sbjct: 279 EGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVIS 338

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE---IFD 250
           + ++I  Y K     KA Y+F++M   ++ P   TY  +  M+G C +V R ++   +F 
Sbjct: 339 YTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTL--MHGLC-HVGRLQDAIALFH 395

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+   G+   + T + +L++ C N    EA  L +      + PD   Y ++     +A 
Sbjct: 396 EMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAG 455

Query: 311 MKELVQKLLKRMEQNGIVPN 330
             E  + L   +   G+ P+
Sbjct: 456 ELEAARDLFSNLSSKGLHPS 475



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 138/329 (41%), Gaps = 40/329 (12%)

Query: 41  GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI--------- 91
           G +PDP+ +  LI   L    K   + +AL  F KM   E  +PN+VTY           
Sbjct: 121 GHQPDPTTFTTLIRG-LCVEGK---IGEALHLFDKMID-EGFQPNVVTYGTLINGLCKVG 175

Query: 92  -------LLRACAQA-------------------RNVDQVNALFKELHESILAPDIYTYN 125
                  LLR+  Q                    R V +   LF ++    ++PDI+TY 
Sbjct: 176 NTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYT 235

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++ A       K + ++L++M +++  PD++ F+ ++D+  K     +  ++   ++  
Sbjct: 236 SLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQR 295

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
             +P + T+ +++  +       +A  VF  M    + P  I+Y  +I  Y     + +A
Sbjct: 296 GVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKA 355

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             +F+E+ +        T N ++   C  G   +A  LF      G  PD  TY +L  +
Sbjct: 356 MYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDS 415

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFF 334
             K    E    LLK +E + + P+ + +
Sbjct: 416 LCKNCHLEEAMALLKAIEASNLNPDIQVY 444



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 122/276 (44%), Gaps = 5/276 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  QR    D   Y+ L+     + +   A+ +F  M   G  PD   Y  LI  +    
Sbjct: 291 MMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYC--- 347

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K   + KA+  F++M   E   P+  TYN L+        +    ALF E+      PD
Sbjct: 348 -KIHKIDKAMYLFEEMCRKEWI-PDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPD 405

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TY+ ++D+  KN  ++E  ++L  ++++   PDI  +N++ID   +    +    +F 
Sbjct: 406 LVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFS 465

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           +L      P++ T+N MI    K  L  +A  +F +M     +P   TY  I   +   +
Sbjct: 466 NLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNN 525

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
              RA ++ +E+   G    VST   ++E    +GL
Sbjct: 526 ETLRAIQLLEEMLARGFSADVSTTTLLVEMLSDDGL 561



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 128/321 (39%), Gaps = 44/321 (13%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D  I+S ++  + K+G+   A  +   M   G  PD   Y  L+  H    +    + 
Sbjct: 263 LPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSE----MD 318

Query: 68  KALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           +A+  F  M  KG     P++++Y  L+    +   +D+   LF+E+      PD  TYN
Sbjct: 319 EAVKVFDMMVRKGF---APDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYN 375

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +M      G +++  ++   M +    PD++T+++L+DS  K    ++   + K++  S
Sbjct: 376 TLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEAS 435

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P +  +N +I    +A     A  +F  +++    PS  TY                
Sbjct: 436 NLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTY---------------- 479

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
                              N M+   C  GL  EA+ LF        +PD  TY  + + 
Sbjct: 480 -------------------NIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARG 520

Query: 306 YTKANMKELVQKLLKRMEQNG 326
           + + N      +LL+ M   G
Sbjct: 521 FLQNNETLRAIQLLEEMLARG 541



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/321 (19%), Positives = 131/321 (40%), Gaps = 5/321 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++KL+  + K       + L ++M + G  P+    N LI +  H      A +  L   
Sbjct: 59  FAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFS-VLAKI 117

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+      +P+  T+  L+R       + +   LF ++ +    P++ TY  +++   K
Sbjct: 118 LKLGH----QPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCK 173

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G       +L  M+   C+PD++ +  +IDS  K +   +   +F  ++     P + T
Sbjct: 174 VGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFT 233

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + S++              +  +M   K  P  + +  ++        V+ A EI D + 
Sbjct: 234 YTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMI 293

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G +  V T   +++ +C+     EA  +F+     G  PD  +Y  L   Y K +  +
Sbjct: 294 QRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKID 353

Query: 314 LVQKLLKRMEQNGIVPNKRFF 334
               L + M +   +P+ + +
Sbjct: 354 KAMYLFEEMCRKEWIPDTKTY 374



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 91/216 (42%)

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           P I  +  ++ +  K      + S+ ++M S    P++ T N+LI+S+           V
Sbjct: 54  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 113

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
              ++    +P   TF ++I         G+A ++F KM    + P+ +TY  +I     
Sbjct: 114 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCK 173

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             N S A  +   + +      V    +++++ C +   TEA  LF      G++PD  T
Sbjct: 174 VGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFT 233

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           Y  L  A       + V  LL +M  + I+P+   F
Sbjct: 234 YTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIF 269



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 106/265 (40%), Gaps = 1/265 (0%)

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L  AL  F ++  M    P+IV +  LL + A+ ++   V +L  ++    + P++YT N
Sbjct: 37  LDDALSSFNRLLHMHP-PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLN 95

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++++     +    SVL+++     +PD  TF  LI          +   +F  ++  
Sbjct: 96  ILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDE 155

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
             +P + T+ ++I    K      A  + + M      P  + Y  II        V+ A
Sbjct: 156 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEA 215

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             +F ++   G    + T  +++ A C          L     N  + PD   +  +  A
Sbjct: 216 FNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDA 275

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
             K        +++  M Q G+ P+
Sbjct: 276 LCKEGKVTEAHEIVDMMIQRGVEPD 300



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 66/163 (40%)

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           F  L+H    P++  F  ++ +  K +       +  +M +    P+  T   +I  + +
Sbjct: 44  FNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCH 103

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
            + V  A  +  ++ KLG     +T   ++   C+ G   EA  LF+   + G  P+  T
Sbjct: 104 LNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVT 163

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           Y  L     K        +LL+ MEQ    P+   +   +++ 
Sbjct: 164 YGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSL 206


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 148/319 (46%), Gaps = 5/319 (1%)

Query: 12  GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           G++  L +V+   G    A+  FS+M+     P     N L    LH   K         
Sbjct: 61  GVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGL----LHRFAKLGKTDDVKR 116

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           +F+ M G    +P + TYNI++    +  +V+    LF+E+    L PD  TYN ++D +
Sbjct: 117 FFKDMIGA-GARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGF 175

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           GK G + +       MK   C+PD+IT+N LI+ + K        + ++ +  +  KP +
Sbjct: 176 GKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNV 235

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            ++++++  + K  +  +A   +  M  +   P+  TY  +I       N+S A  + +E
Sbjct: 236 VSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNE 295

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + ++G +  V T  A+++  C      EA+ LF      GV P+ ++Y  L   + KA  
Sbjct: 296 MLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKN 355

Query: 312 KELVQKLLKRMEQNGIVPN 330
            +   +LL  ++  GI P+
Sbjct: 356 MDRALELLNELKGRGIKPD 374



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 158/367 (43%), Gaps = 45/367 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K R  + DT  Y+ +I   GK G+    +  F EM++  C PD   YNALI        K
Sbjct: 157 KFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFC----K 212

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L   L ++++MKG    KPN+V+Y+ L+ A  +   + Q    + ++    L P+ Y
Sbjct: 213 FGKLPIGLEFYREMKG-NGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEY 271

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++DA  K G + +   + + M     + +++T+  LID     +   + E++F  +
Sbjct: 272 TYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKM 331

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD-- 240
             +   P L ++N++I  + KA+   +A  +  ++      P  + Y   I  +G C   
Sbjct: 332 DTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFI--WGLCSLE 389

Query: 241 -----------------------------------NVSRAREIFDELSKLGKDMKVSTLN 265
                                              N +    + DE+ +L  ++ V T  
Sbjct: 390 KIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFC 449

Query: 266 AMLEAYCMNGLPTEA-DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
            +++  C N L ++A D     S++ G+  +++ +  +     K N  E    L ++M Q
Sbjct: 450 VLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQ 509

Query: 325 NGIVPNK 331
            G+VP++
Sbjct: 510 KGLVPDR 516



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 136/311 (43%), Gaps = 5/311 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  M K+G    A  LF EM+  G  PD   YN++I        K   L   + +F
Sbjct: 133 YNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGF----GKVGRLDDTVCFF 188

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++MK M  C+P+++TYN L+    +   +      ++E+  + L P++ +Y+ ++DA+ K
Sbjct: 189 EEMKDM-CCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCK 247

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            GM+++       M+     P+  T+  LID+  K        ++   ++    +  + T
Sbjct: 248 EGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVT 307

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + ++I     A    +AE +F KM      P+  +Y  +I  +    N+ RA E+ +EL 
Sbjct: 308 YTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELK 367

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    +      +   C       A ++       G+  +S  Y  L  AY K+    
Sbjct: 368 GRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPT 427

Query: 314 LVQKLLKRMEQ 324
               LL  M++
Sbjct: 428 EGLHLLDEMKE 438



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 98/218 (44%), Gaps = 2/218 (0%)

Query: 115 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
           ++  P    ++ +       GM++E     S+MK  +  P   + N L+  + K    D 
Sbjct: 54  NVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDD 113

Query: 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
           +++ FK ++ +  +PT+ T+N MI    K      A  +F++M      P  +TY  +I 
Sbjct: 114 VKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMID 173

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTEADLLFENSHNMGVT 293
            +G    +      F+E+  +  +  V T NA++  +C  G LP   +   E   N G+ 
Sbjct: 174 GFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGN-GLK 232

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           P+  +Y  L  A+ K  M +   K    M + G+VPN+
Sbjct: 233 PNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNE 270



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 101/249 (40%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C P    ++ L         +++    F ++    + P   + NG++  + K G   +++
Sbjct: 56  CVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVK 115

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
                M     +P + T+N++ID   K    +    +F+ +      P   T+NSMI  +
Sbjct: 116 RFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGF 175

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
           GK          F++M  M   P  ITY  +I  +     +    E + E+   G    V
Sbjct: 176 GKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNV 235

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            + + +++A+C  G+  +A   + +   +G+ P+  TY  L  A  K        +L   
Sbjct: 236 VSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNE 295

Query: 322 MEQNGIVPN 330
           M Q G+  N
Sbjct: 296 MLQVGVEWN 304



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 115/301 (38%), Gaps = 45/301 (14%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  +    + + A  LF +M  +G  P+ + YNALI    H   KAK + +AL   
Sbjct: 308 YTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALI----HGFVKAKNMDRALELL 363

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++KG    KP+++ Y   +        ++    +  E+ E  +  +   Y  +MDAY K
Sbjct: 364 NELKG-RGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFK 422

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS-KEKPTLP 192
           +G   E   +L  MK    +  ++TF +LID   K +   K    F  + +    +    
Sbjct: 423 SGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAA 482

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS--------------------------- 225
            F +MI    K      A  +F++M      P                            
Sbjct: 483 IFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKM 542

Query: 226 --------FITYECIITMYGYCDNVSRAREIFDELSKLG----KDMKVSTLNAMLEAYCM 273
                    + Y  ++    +C+ + +AR   +E+   G    + + +S L    E  C+
Sbjct: 543 AEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCI 602

Query: 274 N 274
           +
Sbjct: 603 D 603



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 80/210 (38%), Gaps = 12/210 (5%)

Query: 131 YGKNGMIKEMESVLSRMKS----------NQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           Y  N ++KEM  VLS+             N C P    F+ L          ++  Q F 
Sbjct: 27  YDANSVLKEM--VLSKADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFS 84

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +   +  P   + N ++  + K       +  F+ M      P+  TY  +I       
Sbjct: 85  KMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEG 144

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           +V  AR +F+E+   G      T N+M++ +   G   +    FE   +M   PD  TY 
Sbjct: 145 DVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYN 204

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            L   + K     +  +  + M+ NG+ PN
Sbjct: 205 ALINCFCKFGKLPIGLEFYREMKGNGLKPN 234



 Score = 45.8 bits (107), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 4/155 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           A++ IY+ L+    K G     + L  EM+          +  LI        K K ++K
Sbjct: 408 ANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLC----KNKLVSK 463

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A+ YF ++      + N   +  ++    +   V+    LF+++ +  L PD   Y  +M
Sbjct: 464 AVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLM 523

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           D   K G + E  ++  +M     K D++ +  L+
Sbjct: 524 DGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLV 558


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 153/322 (47%), Gaps = 5/322 (1%)

Query: 9    ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
             D   Y  +I  + K G T  A+ +FSEM  +G  PD  VY++L+        +   L +
Sbjct: 1083 GDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLC----RFGRLKE 1138

Query: 69   ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
            AL +F++M+G      ++ TYN L+   ++A    +V      + +   +PD +T+  ++
Sbjct: 1139 ALEFFKEMEG-RGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILI 1197

Query: 129  DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            D   K G + E + +L  M+    +PDI+T+N L++        +   ++F+SL     K
Sbjct: 1198 DGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIK 1257

Query: 189  PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
              + ++N +I  Y K +   +A   F++M      PS +TY  +I        V  A+++
Sbjct: 1258 LNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKL 1317

Query: 249  FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            F E+   G+ +K+ST   +L+  C NG   EA  LF++       P+   + +L     +
Sbjct: 1318 FVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCR 1377

Query: 309  ANMKELVQKLLKRMEQNGIVPN 330
            A   E   K    + +NG+ P+
Sbjct: 1378 AGKLEEAWKQFDEISKNGLEPD 1399



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 124/297 (41%), Gaps = 6/297 (2%)

Query: 30   AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
            A+ LF EM   G   D   Y  LI        KA+    A+   +KMKG   CK ++ TY
Sbjct: 1035 AVQLFDEMTKKGLLGDAKTYGILINGLC----KARKTGLAIKLHEKMKG--NCKGDVFTY 1088

Query: 90   NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
             +++ A  +     +   +F E+  + + PD+  Y+ +MD   + G +KE       M+ 
Sbjct: 1089 GMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEG 1148

Query: 150  NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
                 D+ T+N LI    +   + ++      ++     P   TF  +I    K    G+
Sbjct: 1149 RGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGE 1208

Query: 210  AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
            A+ + + M      P  +TY  ++        +  A ++F+ L+  G  + V + N ++ 
Sbjct: 1209 AQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILIN 1268

Query: 270  AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
             YC +    EA   FE     G+ P + TY  L  A  ++      QKL   M+  G
Sbjct: 1269 GYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCG 1325



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 137/323 (42%), Gaps = 5/323 (1%)

Query: 9    ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            AD   Y+ LI  + + G  +   W  + M + G  PD   +  LI      ++     A+
Sbjct: 1153 ADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGL--CKEGKVGEAQ 1210

Query: 69   ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
             +    + KG E   P+I+TYN L+        ++    LF+ L +  +  ++++YN ++
Sbjct: 1211 QILELMRHKGKE---PDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILI 1267

Query: 129  DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            + Y K+  I E       M+    KP  +T+N LI +  +       +++F  +    + 
Sbjct: 1268 NGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQF 1327

Query: 189  PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
              L T+  ++    K     +A  +FQ +   ++ P+   +  ++        +  A + 
Sbjct: 1328 LKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQ 1387

Query: 249  FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            FDE+SK G +      N ++   C  G+ +EA  L       G  PDS T+ ++ +   K
Sbjct: 1388 FDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLK 1447

Query: 309  ANMKELVQKLLKRMEQNGIVPNK 331
             N      +LL+ M      P++
Sbjct: 1448 ENEIHEAIQLLEEMRNRNFSPDE 1470



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 132/339 (38%), Gaps = 81/339 (23%)

Query: 70   LGYFQKMKGMER------CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD--- 120
            LGY+  +  M R       +P++ T NIL+  C   R V     +F    +    PD   
Sbjct: 959  LGYYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVT 1018

Query: 121  -------IYTYNGVMDA------------------YG--KNGMIKEMESVLS-----RMK 148
                   ++  NG+ DA                  YG   NG+ K  ++ L+     +MK
Sbjct: 1019 VTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMK 1078

Query: 149  SNQCKPDIITFNLLIDSYGK----RQAFDKMEQ-----------VFKSLMH-----SKEK 188
             N CK D+ T+ ++ID+  K     +A D   +           V+ SLM       + K
Sbjct: 1079 GN-CKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLK 1137

Query: 189  PTLP---------------TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
              L                T+NS+I    +A L  +  +    M    ++P   T+  +I
Sbjct: 1138 EALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILI 1197

Query: 234  TMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
               G C    V  A++I + +   GK+  + T N ++   C+ G   +A  LFE+  + G
Sbjct: 1198 D--GLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRG 1255

Query: 292  VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +  +  +Y +L   Y K    +   +  + M   G+ P+
Sbjct: 1256 IKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPS 1294



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 96/251 (38%), Gaps = 1/251 (0%)

Query: 84   PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
            P   T+N LL + A+      V  +++++++  + PD+YT N ++        +     V
Sbjct: 944  PCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGV 1003

Query: 144  LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
                     +PD +T   L+             Q+F  +          T+  +I    K
Sbjct: 1004 FGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCK 1063

Query: 204  ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
            AR  G A  + +KM        F TY  II         + A ++F E+   G    V  
Sbjct: 1064 ARKTGLAIKLHEKMKGNCKGDVF-TYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVV 1122

Query: 264  LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
             +++++  C  G   EA   F+     G++ D  TY  L    ++A + + V   L  M 
Sbjct: 1123 YSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMV 1182

Query: 324  QNGIVPNKRFF 334
              G  P+   F
Sbjct: 1183 DRGFSPDAFTF 1193



 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)

Query: 14   YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
            Y  L+  + K G    AM LF  ++ +  +P+  V++ L+        +A  L +A   F
Sbjct: 1333 YCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMC----RAGKLEEAWKQF 1388

Query: 74   QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             ++   G+E   P+ + YNIL+        + +   L  ++ E    PD  T+N ++   
Sbjct: 1389 DEISKNGLE---PDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNL 1445

Query: 132  GKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
             K   I E   +L  M++    PD    ++L+
Sbjct: 1446 LKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 1477



 Score = 38.9 bits (89), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 88/230 (38%), Gaps = 38/230 (16%)

Query: 135  GMIKEMESV--LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
            G+IK  +++    R   ++  P   TFN L+ S  K   +  +  +++ +     +P L 
Sbjct: 923  GIIKLNDAIKLFDRSLCSEPMPCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLY 982

Query: 193  TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            T N +I      R  G    VF       + P  +T   ++      + +  A ++FDE+
Sbjct: 983  TLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEM 1042

Query: 253  SKLG----------------------------KDMK------VSTLNAMLEAYCMNGLPT 278
            +K G                            + MK      V T   +++A C +G+ T
Sbjct: 1043 TKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDALCKDGMTT 1102

Query: 279  EADLLFENSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKLLKRMEQNGI 327
            EA  +F      G+ PD   Y  L     +   +KE ++   K ME  GI
Sbjct: 1103 EALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALE-FFKEMEGRGI 1151


>gi|449477323|ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g18900-like [Cucumis sativus]
          Length = 874

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 149/305 (48%), Gaps = 5/305 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I ++G+  Q      L  +M   GC+P+   YN +I    H+  +A  L  A
Sbjct: 378 DGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRII----HSYGRANYLQDA 433

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +  F++M+    C+P+ VTY  L+   A++  +D    +++++ ++ L PD +TY+ +++
Sbjct: 434 VNVFKQMQ-EAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMIN 492

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
             GK G +     +  RM    C P+++T+N++I    K + ++   ++++ +  S  +P
Sbjct: 493 CLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEP 552

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T+  ++   G      +AE +F +M    + P    Y  ++ ++G   NV +A E +
Sbjct: 553 DKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWY 612

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             + K G    V T N++L A+      ++A  L ++    G+ P   TY LL    T A
Sbjct: 613 HAMLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDA 672

Query: 310 NMKEL 314
              ++
Sbjct: 673 QTNDM 677



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 147/332 (44%), Gaps = 44/332 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  LI +  K G   +AM ++ +M+++G  PD   Y+ +I        KA  L  A
Sbjct: 448 DRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINC----LGKAGHLNAA 503

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F +M   E C PN+VTYNI++   A+ARN +    L++++ +S   PD  TY  VM+
Sbjct: 504 HRLFCRMVD-EGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVME 562

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
             G  G ++E E +   M+     PD   + LL+D +GK     K  + + +++ +  KP
Sbjct: 563 VLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKP 622

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM--------YGYCDN 241
            +PT NS++  + +      A  + Q M      PS  TY  +++          G+C  
Sbjct: 623 NVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDAQTNDMGFCCE 682

Query: 242 V-------------------SRAREIFDELSKL-------GKDMKVSTLNAMLEAYCMNG 275
           +                      + + D +SK         ++ K   ++A+++    +G
Sbjct: 683 LMQVTGHPAHTFLVSLPSAGPNGQNVRDHMSKFLDLMHSEDRESKRGLVDAVVDFLHKSG 742

Query: 276 LPTEADLLFENSHNMGVTPD-----SSTYKLL 302
           L  EA  ++E +    V PD     SS Y L+
Sbjct: 743 LKEEAGCVWEAAMQKNVYPDAVKEKSSCYWLI 774



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 121/264 (45%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A ALG+F  +K + R + +  TY  ++    +A+    +N L  ++ +    P++ TYN 
Sbjct: 360 AVALGFFYWLKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNR 419

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++ +YG+   +++  +V  +M+   C+PD +T+  LID + K    D    +++ +  + 
Sbjct: 420 IIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAG 479

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P   T++ MI   GKA     A  +F +M      P+ +TY  +I +     N   A 
Sbjct: 480 LTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIAL 539

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           +++ ++ + G +    T   ++E     G   EA+ +F         PD   Y LL   +
Sbjct: 540 KLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLW 599

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K+   +   +    M + G+ PN
Sbjct: 600 GKSGNVQKAWEWYHAMLKAGLKPN 623



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 110/250 (44%), Gaps = 12/250 (4%)

Query: 102 VDQVNALFKELHESILAPD-IYTYNGVMDAYGKNGMIKEMES---------VLSRMKSNQ 151
           V+ V+ + ++L     A + I   N  +DAY  N ++K ++           L R+   +
Sbjct: 317 VESVSCILQQLKWGPAAEEAIGKLNCSIDAYQANQILKRVDDHAVALGFFYWLKRLP--R 374

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
            + D  T+  +I   G+ + F  + ++   ++    +P + T+N +I +YG+A     A 
Sbjct: 375 FRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAV 434

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
            VF++M      P  +TY  +I ++     +  A  +++++   G      T + M+   
Sbjct: 435 NVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCL 494

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
              G    A  LF    + G  P+  TY ++     KA   E+  KL + M+Q+G  P+K
Sbjct: 495 GKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDK 554

Query: 332 RFFLEALETF 341
             +   +E  
Sbjct: 555 VTYCIVMEVL 564



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 6/103 (5%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQK+ W + D  +Y  L+ + GK G  + A   +  M  +G +P+    N+L++A L   
Sbjct: 580 MQKKNW-VPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFL--- 635

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD 103
            +   L+ A    Q M      KP++ TY +LL  C  A+  D
Sbjct: 636 -RVHQLSDAYQLLQSMLTFG-LKPSLQTYTLLLSCCTDAQTND 676


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 125/249 (50%), Gaps = 7/249 (2%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM--- 140
           PN++T+N ++    +   +++   +  ++      P++ TYN ++D Y K G + +M   
Sbjct: 228 PNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKA 287

Query: 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
           +++L  M  N+  P+ +TFN+LID + K +      +VF+ +     KPT+ T+NS++  
Sbjct: 288 DAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNG 347

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKD 258
                   +A+ +  +M +    P+ ITY  +I   GYC    +  ARE+FD + K G  
Sbjct: 348 LCNEGKLNEAKVLLDEMLSSNLKPNVITYNALIN--GYCKKKLLEEARELFDNIGKQGLT 405

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
             V T N +L  YC  G   EA LL +     G  P++STY  L   + +    E V+ L
Sbjct: 406 PNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNL 465

Query: 319 LKRMEQNGI 327
           L  M+  G+
Sbjct: 466 LNEMQCRGV 474



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 151/318 (47%), Gaps = 12/318 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ +I  + K G+   A  +  +M+  G  P+   YN LI  +       K + KA    
Sbjct: 233 FNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGK-MYKADAIL 291

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M    +  PN VT+N+L+    +  N+     +F+E+    L P + TYN +++    
Sbjct: 292 KEMVE-NKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCN 350

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + E + +L  M S+  KP++IT+N LI+ Y K++  ++  ++F ++      P + T
Sbjct: 351 EGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVIT 410

Query: 194 FNSMIINYGKARLQGKAE--YVFQKMTAMK-YTPSFITYECIITMYGYC--DNVSRAREI 248
           FN+++  Y K    GK E  ++ QK+   K + P+  TY C+I   G+C    +   + +
Sbjct: 411 FNTLLHGYCKF---GKMEEAFLLQKVMLEKGFLPNASTYNCLIV--GFCREGKMEEVKNL 465

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            +E+   G      T N ++ A+C    P +A  L +   + G+ P   TY +L   Y  
Sbjct: 466 LNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCM 525

Query: 309 ANMKELVQKLLKRMEQNG 326
                    L K+ME+ G
Sbjct: 526 EGNLRAALNLRKQMEKEG 543



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 147/319 (46%), Gaps = 21/319 (6%)

Query: 21  MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME 80
           MG+ G+   A  +  EM  +   P+   +N LI        K + L+ AL  F++M+  +
Sbjct: 278 MGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFC----KDENLSAALKVFEEMQS-Q 332

Query: 81  RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140
             KP +VTYN L+        +++   L  E+  S L P++ TYN +++ Y K  +++E 
Sbjct: 333 GLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEA 392

Query: 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF---KSLMHSKEKPTLPTFNSM 197
             +   +      P++ITFN L+  Y K   F KME+ F   K ++     P   T+N +
Sbjct: 393 RELFDNIGKQGLTPNVITFNTLLHGYCK---FGKMEEAFLLQKVMLEKGFLPNASTYNCL 449

Query: 198 IINYGKARLQGKAEYV---FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           I+ + +   +GK E V     +M         +TY  +I+ +       +A  + DE+  
Sbjct: 450 IVGFCR---EGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEM-- 504

Query: 255 LGKDMKVS--TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           L K +K S  T N +L  YCM G    A  L +     G   +  TY +L + Y +    
Sbjct: 505 LDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKL 564

Query: 313 ELVQKLLKRMEQNGIVPNK 331
           E    LL  M + G++PN+
Sbjct: 565 EDANGLLNEMLEKGLIPNR 583



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 126/261 (48%), Gaps = 7/261 (2%)

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           K  G  R K ++++ N LL A  +      V  ++KE+    ++P++ T+N V++   K 
Sbjct: 184 KRAGDYRYKLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKV 243

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM---EQVFKSLMHSKEKPTL 191
           G + +   V+  MK     P+++T+N LID Y K     KM   + + K ++ +K  P  
Sbjct: 244 GKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNS 303

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIF 249
            TFN +I  + K      A  VF++M +    P+ +TY  ++   G C+   ++ A+ + 
Sbjct: 304 VTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVN--GLCNEGKLNEAKVLL 361

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE+        V T NA++  YC   L  EA  LF+N    G+TP+  T+  L   Y K 
Sbjct: 362 DEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKF 421

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              E    L K M + G +PN
Sbjct: 422 GKMEEAFLLQKVMLEKGFLPN 442



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 135/293 (46%), Gaps = 13/293 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALG 71
           ++ LI    K      A+ +F EM++ G +P    YN+L+    +    ++AK L   + 
Sbjct: 306 FNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEML 365

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
                      KPN++TYN L+    + + +++   LF  + +  L P++ T+N ++  Y
Sbjct: 366 S-------SNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGY 418

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G ++E   +   M      P+  T+N LI  + +    ++++ +   +     K   
Sbjct: 419 CKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADT 478

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIF 249
            T+N +I  + + +   KA  +  +M      PS +TY   I + GYC   N+  A  + 
Sbjct: 479 VTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYN--ILLNGYCMEGNLRAALNLR 536

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            ++ K G+   V T N +++ YC  G   +A+ L       G+ P+ +TY+++
Sbjct: 537 KQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEII 589



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 95/233 (40%), Gaps = 45/233 (19%)

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           K  +++ N L+ +  K   F  +E V+K ++  K  P L TFN++I    K     KA  
Sbjct: 192 KLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGD 251

Query: 213 VFQKMTAMKYTPSFITYECIITMY------------------------------------ 236
           V   M    + P+ +TY  +I  Y                                    
Sbjct: 252 VVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLID 311

Query: 237 GYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
           G+C  +N+S A ++F+E+   G    V T N+++   C  G   EA +L +   +  + P
Sbjct: 312 GFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKP 371

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
           +  TY  L   Y K  + E  ++L   + + G+ PN       + TF++ L G
Sbjct: 372 NVITYNALINGYCKKKLLEEARELFDNIGKQGLTPN-------VITFNTLLHG 417



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 5/136 (3%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           ADT  Y+ LI+   +K + + A  L  EM + G +P    YN L+  +    +    L  
Sbjct: 476 ADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGN----LRA 531

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL   ++M+   R   N+VTYN+L++   +   ++  N L  E+ E  L P+  TY  + 
Sbjct: 532 ALNLRKQMEKEGRW-ANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIK 590

Query: 129 DAYGKNGMIKEMESVL 144
           +   + G + ++E  L
Sbjct: 591 EEMMEKGFLPDIEGHL 606



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 5/159 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++ ++ +   Y+ LI    ++G+      L +EM+  G + D   YN LI+A    ++  
Sbjct: 436 EKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPK 495

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           KA A+ +      KG+   KP+ +TYNILL       N+     L K++ +     ++ T
Sbjct: 496 KA-ARLIDEMLD-KGL---KPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVT 550

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           YN ++  Y + G +++   +L+ M      P+  T+ ++
Sbjct: 551 YNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEII 589


>gi|449440748|ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Cucumis sativus]
          Length = 874

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 149/305 (48%), Gaps = 5/305 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I ++G+  Q      L  +M   GC+P+   YN +I    H+  +A  L  A
Sbjct: 378 DGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRII----HSYGRANYLQDA 433

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +  F++M+    C+P+ VTY  L+   A++  +D    +++++ ++ L PD +TY+ +++
Sbjct: 434 VNVFKQMQ-EAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMIN 492

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
             GK G +     +  RM    C P+++T+N++I    K + ++   ++++ +  S  +P
Sbjct: 493 CLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEP 552

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T+  ++   G      +AE +F +M    + P    Y  ++ ++G   NV +A E +
Sbjct: 553 DKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWY 612

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             + K G    V T N++L A+      ++A  L ++    G+ P   TY LL    T A
Sbjct: 613 HAMLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDA 672

Query: 310 NMKEL 314
              ++
Sbjct: 673 QTNDM 677



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 147/332 (44%), Gaps = 44/332 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  LI +  K G   +AM ++ +M+++G  PD   Y+ +I        KA  L  A
Sbjct: 448 DRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINC----LGKAGHLNAA 503

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F +M   E C PN+VTYNI++   A+ARN +    L++++ +S   PD  TY  VM+
Sbjct: 504 HRLFCRMVD-EGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVME 562

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
             G  G ++E E +   M+     PD   + LL+D +GK     K  + + +++ +  KP
Sbjct: 563 VLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKP 622

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM--------YGYCDN 241
            +PT NS++  + +      A  + Q M      PS  TY  +++          G+C  
Sbjct: 623 NVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDAQTNDMGFCCE 682

Query: 242 V-------------------SRAREIFDELSKL-------GKDMKVSTLNAMLEAYCMNG 275
           +                      + + D +SK         ++ K   ++A+++    +G
Sbjct: 683 LMQVTGHPAHTFLVSLPSAGPNGQNVRDHMSKFLDLMHSEDRESKRGLVDAVVDFLHKSG 742

Query: 276 LPTEADLLFENSHNMGVTPD-----SSTYKLL 302
           L  EA  ++E +    V PD     SS Y L+
Sbjct: 743 LKEEAGCVWEAAMQKNVYPDAVKEKSSCYWLI 774



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 121/264 (45%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A ALG+F  +K + R + +  TY  ++    +A+    +N L  ++ +    P++ TYN 
Sbjct: 360 AVALGFFYWLKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNR 419

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++ +YG+   +++  +V  +M+   C+PD +T+  LID + K    D    +++ +  + 
Sbjct: 420 IIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAG 479

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P   T++ MI   GKA     A  +F +M      P+ +TY  +I +     N   A 
Sbjct: 480 LTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIAL 539

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           +++ ++ + G +    T   ++E     G   EA+ +F         PD   Y LL   +
Sbjct: 540 KLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLW 599

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K+   +   +    M + G+ PN
Sbjct: 600 GKSGNVQKAWEWYHAMLKAGLKPN 623



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 110/250 (44%), Gaps = 12/250 (4%)

Query: 102 VDQVNALFKELHESILAPD-IYTYNGVMDAYGKNGMIKEMES---------VLSRMKSNQ 151
           V+ V+ + ++L     A + I   N  +DAY  N ++K ++           L R+   +
Sbjct: 317 VESVSCILQQLKWGPAAEEAIGKLNCSIDAYQANQILKRVDDHAVALGFFYWLKRLP--R 374

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
            + D  T+  +I   G+ + F  + ++   ++    +P + T+N +I +YG+A     A 
Sbjct: 375 FRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAV 434

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
            VF++M      P  +TY  +I ++     +  A  +++++   G      T + M+   
Sbjct: 435 NVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCL 494

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
              G    A  LF    + G  P+  TY ++     KA   E+  KL + M+Q+G  P+K
Sbjct: 495 GKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDK 554

Query: 332 RFFLEALETF 341
             +   +E  
Sbjct: 555 VTYCIVMEVL 564



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 6/103 (5%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQK+ W + D  +Y  L+ + GK G  + A   +  M  +G +P+    N+L++A L   
Sbjct: 580 MQKKNW-VPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFL--- 635

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD 103
            +   L+ A    Q M      KP++ TY +LL  C  A+  D
Sbjct: 636 -RVHQLSDAYQLLQSMLTFG-LKPSLQTYTLLLSCCTDAQTND 676


>gi|110740599|dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]
          Length = 546

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 128/247 (51%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P++  YN++LR   +A+  D  + LF E+ +  LAPD YTY+ ++ ++GK GM     S 
Sbjct: 21  PSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSW 80

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L +M+ ++   D++ ++ LI+   +   + K   +F  L  S   P L  +NSMI  YGK
Sbjct: 81  LQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGK 140

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A+L  +A  + ++M      P+ ++Y  ++++Y        A  +F E+ ++   + ++T
Sbjct: 141 AKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTT 200

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N M++ Y    +  EAD LF +   M + P+  +Y  + + Y +A +      L + M+
Sbjct: 201 CNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQ 260

Query: 324 QNGIVPN 330
           +  I  N
Sbjct: 261 RKDIEQN 267



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 155/329 (47%), Gaps = 5/329 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 50  RQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDY 109

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +   L KE++E+ + P+  
Sbjct: 110 SKAIS----IFSRLK-RSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTV 164

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV + MK   C  D+ T N++ID YG+     + +++F SL
Sbjct: 165 SYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSL 224

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG+A L G+A ++F+ M       + +TY  +I +YG     
Sbjct: 225 RKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEH 284

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A  LF+   + GV  D   Y+ +
Sbjct: 285 EKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTM 344

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             AY +  +    ++LL  ++    +P +
Sbjct: 345 IVAYERVGLMGHAKRLLHELKLPDNIPRE 373



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 141/297 (47%), Gaps = 5/297 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  +      A+ +FS ++ SG  PD   YN++I  +     KAK   +
Sbjct: 91  GDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVY----GKAKLFRE 146

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A    ++M       PN V+Y+ LL    +     +  ++F E+ E   A D+ T N ++
Sbjct: 147 ARLLIKEMNEAG-VLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMI 205

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+  M+KE + +   ++    +P+++++N ++  YG+ + F +   +F+ +     +
Sbjct: 206 DVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIE 265

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+N+MI  YGK     KA  + Q+M +    P+ ITY  II+++G    + RA  +
Sbjct: 266 QNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATL 325

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           F +L   G ++       M+ AY   GL   A  L          P  +   +L KA
Sbjct: 326 FQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKA 382



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 151/336 (44%), Gaps = 9/336 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + +T  YS L++V  +  +   A+ +F+EM+   C  D +  N +I  +     +   + 
Sbjct: 160 LPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVY----GQLDMVK 215

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A   F  ++ M+  +PN+V+YN +LR   +A    +   LF+ +    +  ++ TYN +
Sbjct: 216 EADRLFWSLRKMD-IEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTM 274

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  YGK    ++  +++  M+S   +P+ IT++ +I  +GK    D+   +F+ L  S  
Sbjct: 275 IKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGV 334

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +     + +MI+ Y +  L G A+ +  ++      P  I  E  IT+         A  
Sbjct: 335 EIDQVLYQTMIVAYERVGLMGHAKRLLHELK----LPDNIPRETAITILAKAGRTEEATW 390

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F +  + G+   +S    M+  Y  N        +FE     G  PDS+   ++  AY 
Sbjct: 391 VFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYG 450

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
           K    E    + + M++ G V       + L  +SS
Sbjct: 451 KQREFEKADTVYREMQEEGCVFPDEVHFQMLSLYSS 486



 Score = 42.4 bits (98), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 19/175 (10%)

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
            +K  P++  +N ++ N  +A+    A  +F +M      P   TY  +IT +G      
Sbjct: 16  EAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFD 75

Query: 244 RAREIFD--ELSKLGKDMKV-STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            A       E  ++  D+ + S L  +    C     ++A  +F      G+TPD   Y 
Sbjct: 76  SALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDY---SKAISIFSRLKRSGITPDLVAYN 132

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN-------------KRFFLEALETFS 342
            +   Y KA +    + L+K M + G++PN                FLEAL  F+
Sbjct: 133 SMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFA 187


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 148/319 (46%), Gaps = 5/319 (1%)

Query: 12  GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           G++  L +V+   G    A+  FS+M+     P     N L    LH   K         
Sbjct: 193 GVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGL----LHRFAKLGKTDDVKR 248

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           +F+ M G    +P + TYNI++    +  +V+    LF+E+    L PD  TYN ++D +
Sbjct: 249 FFKDMIG-AGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGF 307

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           GK G + +       MK   C+PD+IT+N LI+ + K        + ++ +  +  KP +
Sbjct: 308 GKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNV 367

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            ++++++  + K  +  +A   +  M  +   P+  TY  +I       N+S A  + +E
Sbjct: 368 VSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNE 427

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + ++G +  V T  A+++  C      EA+ LF      GV P+ ++Y  L   + KA  
Sbjct: 428 MLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKN 487

Query: 312 KELVQKLLKRMEQNGIVPN 330
            +   +LL  ++  GI P+
Sbjct: 488 MDRALELLNELKGRGIKPD 506



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 158/367 (43%), Gaps = 45/367 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K R  + DT  Y+ +I   GK G+    +  F EM++  C PD   YNALI        K
Sbjct: 289 KFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFC----K 344

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L   L ++++MKG    KPN+V+Y+ L+ A  +   + Q    + ++    L P+ Y
Sbjct: 345 FGKLPIGLEFYREMKG-NGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEY 403

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++DA  K G + +   + + M     + +++T+  LID     +   + E++F  +
Sbjct: 404 TYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKM 463

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD-- 240
             +   P L ++N++I  + KA+   +A  +  ++      P  + Y   I  +G C   
Sbjct: 464 DTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFI--WGLCSLE 521

Query: 241 -----------------------------------NVSRAREIFDELSKLGKDMKVSTLN 265
                                              N +    + DE+ +L  ++ V T  
Sbjct: 522 KIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFC 581

Query: 266 AMLEAYCMNGLPTEA-DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
            +++  C N L ++A D     S++ G+  +++ +  +     K N  E    L ++M Q
Sbjct: 582 VLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQ 641

Query: 325 NGIVPNK 331
            G+VP++
Sbjct: 642 KGLVPDR 648



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 137/314 (43%), Gaps = 5/314 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  M K+G    A  LF EM+  G  PD   YN++I        K   L   + +F
Sbjct: 265 YNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGF----GKVGRLDDTVCFF 320

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++MK M  C+P+++TYN L+    +   +      ++E+  + L P++ +Y+ ++DA+ K
Sbjct: 321 EEMKDM-CCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCK 379

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            GM+++       M+     P+  T+  LID+  K        ++   ++    +  + T
Sbjct: 380 EGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVT 439

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + ++I     A    +AE +F KM      P+  +Y  +I  +    N+ RA E+ +EL 
Sbjct: 440 YTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELK 499

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    +      +   C       A ++       G+  +S  Y  L  AY K+    
Sbjct: 500 GRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPT 559

Query: 314 LVQKLLKRMEQNGI 327
               LL  M++  I
Sbjct: 560 EGLHLLDEMKELDI 573



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 98/218 (44%), Gaps = 2/218 (0%)

Query: 115 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
           ++  P    ++ +       GM++E     S+MK  +  P   + N L+  + K    D 
Sbjct: 186 NVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDD 245

Query: 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
           +++ FK ++ +  +PT+ T+N MI    K      A  +F++M      P  +TY  +I 
Sbjct: 246 VKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMID 305

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTEADLLFENSHNMGVT 293
            +G    +      F+E+  +  +  V T NA++  +C  G LP   +   E   N G+ 
Sbjct: 306 GFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGN-GLK 364

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           P+  +Y  L  A+ K  M +   K    M + G+VPN+
Sbjct: 365 PNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNE 402



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 101/249 (40%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C P    ++ L         +++    F ++    + P   + NG++  + K G   +++
Sbjct: 188 CVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVK 247

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
                M     +P + T+N++ID   K    +    +F+ +      P   T+NSMI  +
Sbjct: 248 RFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGF 307

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
           GK          F++M  M   P  ITY  +I  +     +    E + E+   G    V
Sbjct: 308 GKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNV 367

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            + + +++A+C  G+  +A   + +   +G+ P+  TY  L  A  K        +L   
Sbjct: 368 VSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNE 427

Query: 322 MEQNGIVPN 330
           M Q G+  N
Sbjct: 428 MLQVGVEWN 436



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 115/301 (38%), Gaps = 45/301 (14%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  +    + + A  LF +M  +G  P+ + YNALI    H   KAK + +AL   
Sbjct: 440 YTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALI----HGFVKAKNMDRALELL 495

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++KG    KP+++ Y   +        ++    +  E+ E  +  +   Y  +MDAY K
Sbjct: 496 NELKG-RGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFK 554

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS-KEKPTLP 192
           +G   E   +L  MK    +  ++TF +LID   K +   K    F  + +    +    
Sbjct: 555 SGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAA 614

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS--------------------------- 225
            F +MI    K      A  +F++M      P                            
Sbjct: 615 IFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKM 674

Query: 226 --------FITYECIITMYGYCDNVSRAREIFDELSKLG----KDMKVSTLNAMLEAYCM 273
                    + Y  ++    +C+ + +AR   +E+   G    + + +S L    E  C+
Sbjct: 675 AEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCI 734

Query: 274 N 274
           +
Sbjct: 735 D 735



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 89/239 (37%), Gaps = 12/239 (5%)

Query: 131 YGKNGMIKEMESVLSRMKS----------NQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           Y  N ++KEM  VLS+             N C P    F+ L          ++  Q F 
Sbjct: 159 YDANSVLKEM--VLSKADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFS 216

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +   +  P   + N ++  + K       +  F+ M      P+  TY  +I       
Sbjct: 217 KMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEG 276

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           +V  AR +F+E+   G      T N+M++ +   G   +    FE   +M   PD  TY 
Sbjct: 277 DVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYN 336

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTR 359
            L   + K     +  +  + M+ NG+ PN   +   ++ F       Q+     D+ R
Sbjct: 337 ALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRR 395



 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 4/155 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           A++ IY+ L+    K G     + L  EM+          +  LI        K K ++K
Sbjct: 540 ANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLC----KNKLVSK 595

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A+ YF ++      + N   +  ++    +   V+    LF+++ +  L PD   Y  +M
Sbjct: 596 AVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLM 655

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           D   K G + E  ++  +M     K D++ +  L+
Sbjct: 656 DGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLV 690


>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
          Length = 472

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 147/320 (45%), Gaps = 8/320 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL-HTRDKAKALAKALGY 72
           Y+ L+    +  +  LA+  F ++  +G R D     A+I +HL     +AK   +AL  
Sbjct: 80  YAILMDCCTRAHRPELALAFFGQLLRTGLRVD-----AIIASHLLKGFCEAKRTDEALDI 134

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE--SILAPDIYTYNGVMDA 130
                    C P++ +YNILL++        Q + L + + E  ++ +PD+  YN V+D 
Sbjct: 135 LLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNTVIDG 194

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K G + +   +   M      PD++T+N ++ +  K +A DK E   + +++ +  P 
Sbjct: 195 FFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPN 254

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             T+N++I  Y       +A  VF++M      P  +T   ++        +  AR++FD
Sbjct: 255 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFD 314

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            ++  G++  V + N ML  Y   G   +   LF+     G+ PD  T+ +  KAY    
Sbjct: 315 TMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCG 374

Query: 311 MKELVQKLLKRMEQNGIVPN 330
           M +    +   M  +G+ P+
Sbjct: 375 MLDKAMIIFNEMRDHGVKPD 394



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 133/303 (43%), Gaps = 11/303 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG--CRPDPSVYNALITAHLHTRDKAKA 65
           + D   Y+ L+  +  +G++  A  L   M   G  C PD   YN +I       D    
Sbjct: 145 VPDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGD---- 200

Query: 66  LAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           + KA   F++M  +G+    P++VTYN ++ A  +AR +D+  A  +++    + P+ +T
Sbjct: 201 VNKACDLFKEMVQRGIP---PDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWT 257

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++  Y   G  KE   V   M+ +   PD++T ++L+ S  K     +   VF ++ 
Sbjct: 258 YNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMA 317

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
              + P + ++N M+  Y           +F  M      P F T+   I  Y  C  + 
Sbjct: 318 MKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGMLD 377

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           +A  IF+E+   G    V T   ++ A C  G   +A   F    + GV PD   Y  L 
Sbjct: 378 KAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLI 437

Query: 304 KAY 306
           + +
Sbjct: 438 QGF 440



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 118/267 (44%), Gaps = 5/267 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I    K+G    A  LF EM   G  PD   YN+++    H   KA+A+ KA
Sbjct: 184 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVV----HALCKARAMDKA 239

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
             + ++M   +R  PN  TYN L+   +      +   +FKE+    + PD+ T + +M 
Sbjct: 240 EAFLRQMVN-KRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMG 298

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           +  K G IKE   V   M      PD+ ++N++++ Y  +     M  +F  ++     P
Sbjct: 299 SLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAP 358

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              TFN  I  Y    +  KA  +F +M      P  +TY  +I        +  A E F
Sbjct: 359 DFYTFNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 418

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGL 276
           +++   G        N +++ +C +G+
Sbjct: 419 NQMIDQGVAPDKYAYNCLIQGFCTHGI 445



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 143/309 (46%), Gaps = 15/309 (4%)

Query: 41  GCRPDPSVYNALITAHLHTRDKAKA--LAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
           GC PD   YN L+ +  +     +A  L + +      +G   C P++V YN ++    +
Sbjct: 143 GCVPDVFSYNILLKSLCNQGKSGQADNLLRMMA-----EGGTVCSPDVVAYNTVIDGFFK 197

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
             +V++   LFKE+ +  + PD+ TYN V+ A  K   + + E+ L +M + +  P+  T
Sbjct: 198 EGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWT 257

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM---IINYGKARLQGKAEYVFQ 215
           +N LI  Y     + +  +VFK +      P + T + +   +  YGK +   +A  VF 
Sbjct: 258 YNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIK---EARDVFD 314

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            M      P   +Y  ++  Y     +    ++FD +   G      T N  ++AY   G
Sbjct: 315 TMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCG 374

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKLLKRMEQNGIVPNKRFF 334
           +  +A ++F    + GV PD  TY+ +  A  +   M + ++K  + ++Q G+ P+K  +
Sbjct: 375 MLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQ-GVAPDKYAY 433

Query: 335 LEALETFSS 343
              ++ F +
Sbjct: 434 NCLIQGFCT 442



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 5/111 (4%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF  M   G  PD   +N  I A+ +       L KA+  F +M+     KP++VTY  +
Sbjct: 347 LFDLMLGDGIAPDFYTFNVQIKAYAN----CGMLDKAMIIFNEMRD-HGVKPDVVTYRTV 401

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           + A  +   +D     F ++ +  +APD Y YN ++  +  +G++ + + +
Sbjct: 402 IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGILLKTQGI 452


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 145/308 (47%), Gaps = 16/308 (5%)

Query: 14  YSKLIAVMGKKG-QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           Y+ +I   GK G     A  +F EM  +G +PD   +N+L    L    +      A   
Sbjct: 258 YNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSL----LAVCGRGGLWEAARNL 313

Query: 73  FQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           F +M  +G+E+   +I TYN LL A  +   +D    +  E+    + P++ TY+ V+D 
Sbjct: 314 FSEMLYRGIEQ---DIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDG 370

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           Y K G + E  ++ + MK      D +++N L+  Y K   F++   V K +  S  K  
Sbjct: 371 YAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKD 430

Query: 191 LPTFNSMIINYGKARLQGKAE---YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
             T+N+++  YGK   QGK E    VF++M A +  P+ +TY  +I +Y        A E
Sbjct: 431 AVTYNALLGGYGK---QGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAME 487

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F E  K G    V   +A+++A C NGL   A    +     G+ P+  TY  +  A+ 
Sbjct: 488 VFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFG 547

Query: 308 KANMKELV 315
           ++   E V
Sbjct: 548 RSGSAECV 555



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 146/316 (46%), Gaps = 6/316 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           + S +I+++G+ GQ  LA  +F    N G       ++ALI+A+     ++    +A+  
Sbjct: 187 LASAMISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAY----GRSGYCDEAIKV 242

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           F+ MK     KPN+VTYN ++ AC +   + ++   +F E+  + + PD  T+N ++   
Sbjct: 243 FETMKS-SGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVC 301

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           G+ G+ +   ++ S M     + DI T+N L+D+  K    D   Q+   +      P +
Sbjct: 302 GRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNV 361

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T++++I  Y KA    +A  +F +M         ++Y  ++++Y        A  +  E
Sbjct: 362 VTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKE 421

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G      T NA+L  Y   G   E   +FE      + P+  TY  L   Y+K  +
Sbjct: 422 MESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGL 481

Query: 312 KELVQKLLKRMEQNGI 327
            +   ++ +  ++ G+
Sbjct: 482 YQEAMEVFREFKKAGL 497



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 144/323 (44%), Gaps = 40/323 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+++  K G+   A+ +  EM +SG + D   YNAL+  +     K     +    F
Sbjct: 399 YNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGY----GKQGKYEEVKRVF 454

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++MK  ER  PN++TY+ L+   ++     +   +F+E  ++ L  D+  Y+ ++DA  K
Sbjct: 455 EEMKA-ERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCK 513

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR--------------------QAFD 173
           NG+++   S L  M     +P+++T+N +ID++G+                      +  
Sbjct: 514 NGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGSAECVIDPPYETNVSKMSSSSLK 573

Query: 174 KMEQVFKSLMHSKE-KPTLPTFNSMIIN---YGKARLQGKAEY-----VFQKMTAMKYTP 224
            +E   +S +  KE    +  F  +      + K   +G+ E      VF KM  +   P
Sbjct: 574 VVEDATESEVGDKEDNQIIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHKMHELDIKP 633

Query: 225 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 284
           + +T+  I+     C++   A  + +EL +L  +      + +L  Y  N +  +A  LF
Sbjct: 634 NVVTFSAILNACSRCNSFEDASMLLEEL-RLFDNQVYGVAHGLLMGYGDN-VWVQAQSLF 691

Query: 285 ENSHNMGVTPDSSTYKLLYKAYT 307
           +    M    DSST    Y A T
Sbjct: 692 DEVKQM----DSSTASAFYNALT 710



 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY-TYNGVM 128
           L  F KM  ++  KPN+VT++ +L AC++  + +  + L +EL   +    +Y   +G++
Sbjct: 620 LAVFHKMHELD-IKPNVVTFSAILNACSRCNSFEDASMLLEELR--LFDNQVYGVAHGLL 676

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID---SYGKRQA 171
             YG N  + + +S+   +K          +N L D    +G+R+ 
Sbjct: 677 MGYGDNVWV-QAQSLFDEVKQMDSSTASAFYNALTDMLWHFGQRRG 721


>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
          Length = 724

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 156/329 (47%), Gaps = 13/329 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMW--LFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           Y +D   YS +I  + +  ++  +M   +++E+ +     D  + N +I     + D  +
Sbjct: 286 YPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVGFAKSGDVNR 345

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           A++     F  M       P   T   ++ A   A   ++  A+F+EL E  L P    Y
Sbjct: 346 AMS-----FLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAY 400

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++  Y K G +K+ ES++S M+ +   PD  T++LLID+Y     ++    V K +  
Sbjct: 401 NALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEA 460

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDN 241
           S  +P    F+ ++ +Y   R +GK +  FQ +  M+    +P    Y  +I  +G C+ 
Sbjct: 461 SGVRPNSYVFSRILASY---RDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNC 517

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +  A   FD +   G      T N +++ +C +G   +A+ LFE     G +P ++TY +
Sbjct: 518 LDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNI 577

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +  ++ +    E V+ LL +M+  G++ N
Sbjct: 578 MINSFGEQERWEDVKTLLGKMQSQGLLAN 606



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 148/352 (42%), Gaps = 37/352 (10%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T     +I  +G  G+T  A  +F E++  G  P    YNAL+  ++    K  +L  A 
Sbjct: 362 TATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYV----KTGSLKDAE 417

Query: 71  GYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
               +M   ER    P+  TY++L+ A A A   +    + KE+  S + P+ Y ++ ++
Sbjct: 418 SIVSEM---ERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRIL 474

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            +Y   G  ++   VL  M+++   PD   +N++ID++GK    D     F  +     +
Sbjct: 475 ASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQ 534

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   T+N++I  + K+    KAE +F+ M     +P   TY  +I  +G  +     + +
Sbjct: 535 PDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTL 594

Query: 249 FDELSKLGKDMKVST----------------------------LNAMLEAYCMNGLPTEA 280
             ++   G    V T                            LN+++ A+  +    EA
Sbjct: 595 LGKMQSQGLLANVVTYTTLGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEA 654

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             + +      + PD  TY  L KA  +    + V  + + M  +G  P+++
Sbjct: 655 FSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPDRK 706



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 113/255 (44%), Gaps = 7/255 (2%)

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y+IL+ A  ++  + +    F       L P   TYN ++ A  +N  +++  +++SRM+
Sbjct: 228 YSILIHALGRSEKLYEA---FLLSQRQTLTP--LTYNALIGACARNDDLEKALNLMSRMR 282

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDK--MEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
            +    D + ++ +I S  +    D   +++++  +   K +      N +I+ + K+  
Sbjct: 283 RDGYPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVGFAKSGD 342

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
             +A      +     +P   T   +IT  G       A  IF+EL + G   +    NA
Sbjct: 343 VNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNA 402

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           +L+ Y   G   +A+ +       G +PD  TY LL  AY  A   E  + +LK ME +G
Sbjct: 403 LLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASG 462

Query: 327 IVPNKRFFLEALETF 341
           + PN   F   L ++
Sbjct: 463 VRPNSYVFSRILASY 477



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 130/320 (40%), Gaps = 12/320 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +YS LI  +G+  +   A +L S+ +       P  YNALI A     D    L KAL  
Sbjct: 227 LYSILIHALGRSEKLYEA-FLLSQRQTL----TPLTYNALIGACARNDD----LEKALNL 277

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQ--VNALFKELHESILAPDIYTYNGVMDA 130
             +M+  +    + V Y+ ++++  +    D   +  ++ E+    +  D    N ++  
Sbjct: 278 MSRMR-RDGYPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVG 336

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K+G +    S L+ ++ N   P   T   +I + G     ++ E +F+ L      P 
Sbjct: 337 FAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPR 396

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
              +N+++  Y K      AE +  +M    ++P   TY  +I  Y        AR +  
Sbjct: 397 TRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLK 456

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+   G        + +L +Y   G   ++  +     N GV+PD   Y ++   + K N
Sbjct: 457 EMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCN 516

Query: 311 MKELVQKLLKRMEQNGIVPN 330
             +       RM   G+ P+
Sbjct: 517 CLDHALATFDRMRMEGVQPD 536



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 86/208 (41%), Gaps = 33/208 (15%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I   GK      A+  F  MR  G +PD   +N LI  H     K+    KA
Sbjct: 501 DRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHC----KSGHHNKA 556

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL--------------------- 108
              F+ M+    C P   TYNI++ +  +    + V  L                     
Sbjct: 557 EELFEAMQE-SGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLGL 615

Query: 109 -------FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
                  F+ +    L P +   N +++A+G++    E  SVL  MK N  KPD++T+  
Sbjct: 616 SEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTT 675

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           L+ +  + + FDK+  V++ +  S   P
Sbjct: 676 LMKALIRVEKFDKVPAVYEEMTLSGCTP 703


>gi|449459510|ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
 gi|449530101|ref|XP_004172035.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
          Length = 680

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 157/327 (48%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR   AD   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 186 RQRALAADRYTYSTLITYFGKEGMFDAALSWLQKMEQDRVSGDLVLYSNLIELSRKLCDY 245

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P+IV YN ++    +A+   +   L KE+    + PD  
Sbjct: 246 SKAIS----IFSRLK-RSGITPDIVAYNTMINVFGKAKLFREARFLLKEMRAVDVMPDTV 300

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ +++ + +N    E  SV+S MK   C  D+ T N++ID YG+     + +++F  +
Sbjct: 301 SYSTLLNMFVENEKFLEALSVISEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWRM 360

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG+A L G+A ++F+ M   +   + +TY  +I +YG     
Sbjct: 361 RKIGIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKEIKQNVVTYNTMIKIYGKTLEH 420

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  ++ K G +    T + ++  +   G    + +LF+   + G   D   Y+ +
Sbjct: 421 EKATNLVQDMQKRGIEPNAITYSTIISIWGKAGKLDRSAMLFQKLRSSGAEIDQVLYQTM 480

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY KA +    ++LL  ++Q   +P
Sbjct: 481 IVAYEKAGLVGHAKRLLHELKQPDNIP 507



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 143/298 (47%), Gaps = 7/298 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YN +I        KAK   +
Sbjct: 227 GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGITPDIVAYNTMINVF----GKAKLFRE 282

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A    ++M+ ++   P+ V+Y+ LL    +     +  ++  E+ E     D+ T N ++
Sbjct: 283 ARFLLKEMRAVD-VMPDTVSYSTLLNMFVENEKFLEALSVISEMKEVNCPLDLTTCNIMI 341

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE- 187
           D YG+  M+KE + +  RM+    +P+++++N ++  YG+ + F +   +F+ LM  KE 
Sbjct: 342 DVYGQLDMVKEADRLFWRMRKIGIEPNVVSYNTILRVYGEAELFGEAIHLFR-LMQRKEI 400

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           K  + T+N+MI  YGK     KA  + Q M      P+ ITY  II+++G    + R+  
Sbjct: 401 KQNVVTYNTMIKIYGKTLEHEKATNLVQDMQKRGIEPNAITYSTIISIWGKAGKLDRSAM 460

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           +F +L   G ++       M+ AY   GL   A  L          P ++   +L KA
Sbjct: 461 LFQKLRSSGAEIDQVLYQTMIVAYEKAGLVGHAKRLLHELKQPDNIPRTTAITILAKA 518



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 127/247 (51%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P++  YN++LR   +A+  +  + LF E+ +  LA D YTY+ ++  +GK GM     S 
Sbjct: 157 PSVYAYNVVLRNVLRAKQWELAHGLFDEMRQRALAADRYTYSTLITYFGKEGMFDAALSW 216

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L +M+ ++   D++ ++ LI+   K   + K   +F  L  S   P +  +N+MI  +GK
Sbjct: 217 LQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGITPDIVAYNTMINVFGK 276

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A+L  +A ++ ++M A+   P  ++Y  ++ M+   +    A  +  E+ ++   + ++T
Sbjct: 277 AKLFREARFLLKEMRAVDVMPDTVSYSTLLNMFVENEKFLEALSVISEMKEVNCPLDLTT 336

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N M++ Y    +  EAD LF     +G+ P+  +Y  + + Y +A +      L + M+
Sbjct: 337 CNIMIDVYGQLDMVKEADRLFWRMRKIGIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQ 396

Query: 324 QNGIVPN 330
           +  I  N
Sbjct: 397 RKEIKQN 403



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 144/321 (44%), Gaps = 13/321 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  YS L+ +  +  +   A+ + SEM+   C  D +  N +I  +     +   + +A
Sbjct: 298 DTVSYSTLLNMFVENEKFLEALSVISEMKEVNCPLDLTTCNIMIDVY----GQLDMVKEA 353

Query: 70  LGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F +M+  G+E   PN+V+YN +LR   +A    +   LF+ +    +  ++ TYN +
Sbjct: 354 DRLFWRMRKIGIE---PNVVSYNTILRVYGEAELFGEAIHLFRLMQRKEIKQNVVTYNTM 410

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  YGK    ++  +++  M+    +P+ IT++ +I  +GK    D+   +F+ L  S  
Sbjct: 411 IKIYGKTLEHEKATNLVQDMQKRGIEPNAITYSTIISIWGKAGKLDRSAMLFQKLRSSGA 470

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +     + +MI+ Y KA L G A+ +  ++      P  I     IT+      +  A  
Sbjct: 471 EIDQVLYQTMIVAYEKAGLVGHAKRLLHELKQ----PDNIPRTTAITILAKAGRIEEATW 526

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F +    G+   +S    M++ +  N        +FE   N+G  P+S    L+  AY 
Sbjct: 527 VFRQAFDAGELKDISVFECMIDLFSRNKKHKNVLEVFEKMRNVGHFPNSDVIALVLNAYG 586

Query: 308 KANMKELVQKLLKRMEQNGIV 328
           K    +    L   M++ G V
Sbjct: 587 KLRDFDTADALYMEMQEEGCV 607


>gi|356569143|ref|XP_003552765.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 130/263 (49%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +AL     +       P++  YN+LLR   +A+     + LF E+ +  L+PD YTY+ +
Sbjct: 117 RALALLDWINDKALYSPSLFAYNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTL 176

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           + ++GK+G+       L +M+ +    D++ ++ LID   K   + K   +F  L  S  
Sbjct: 177 ITSFGKHGLFDSSLFWLQQMEQDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKASTI 236

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P L  +NSMI  +GKA+L  +A  + Q+M      P  ++Y  ++ +Y        A  
Sbjct: 237 SPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALS 296

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F E+++    + ++T N M++ Y    +P EAD LF +   MG+ P+  +Y  L + Y 
Sbjct: 297 LFFEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVVSYNTLLRVYG 356

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           +A++      L + M+   +  N
Sbjct: 357 EADLFGEAIHLFRLMQSKDVQQN 379



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 150/328 (45%), Gaps = 12/328 (3%)

Query: 7   YIADTGIYSK-------LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT 59
           +I D  +YS        L+  + +  Q  LA  LF EMR  G  PD   Y+ LIT+    
Sbjct: 124 WINDKALYSPSLFAYNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITSF--- 180

Query: 60  RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
             K      +L + Q+M+  +    ++V Y+ L+    +  +  +  ++F  L  S ++P
Sbjct: 181 -GKHGLFDSSLFWLQQME-QDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKASTISP 238

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D+  YN +++ +GK  + +E   +L  M+ N  +PD ++++ L+  Y   Q F +   +F
Sbjct: 239 DLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLF 298

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             +  +K    L T N MI  YG+  +  +A+ +F  M  M   P+ ++Y  ++ +YG  
Sbjct: 299 FEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVVSYNTLLRVYGEA 358

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           D    A  +F  +        V T N M+  Y       +A  L +     G+ P++ TY
Sbjct: 359 DLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMKKRGIEPNAITY 418

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGI 327
             +   + KA   +    L +++  +G+
Sbjct: 419 STIISIWEKAGKLDRAAILFQKLRSSGV 446



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 158/330 (47%), Gaps = 11/330 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +Q+    D   YS LI   GK G    +++   +M       D  +Y+ LI       D 
Sbjct: 162 RQKGLSPDRYTYSTLITSFGKHGLFDSSLFWLQQMEQDNVSGDLVLYSNLI-------DL 214

Query: 63  AKALA---KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
           A+ L+   KA+  F ++K      P+++ YN ++    +A+   +   L +E+ ++ + P
Sbjct: 215 ARKLSDYSKAISIFSRLKA-STISPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQP 273

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D  +Y+ ++  Y  N    E  S+   M   +C  D+ T N++ID YG+     + +++F
Sbjct: 274 DTVSYSTLLAIYVDNQKFVEALSLFFEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLF 333

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
            S+     +P + ++N+++  YG+A L G+A ++F+ M +     + +TY  +I +YG  
Sbjct: 334 WSMRKMGIQPNVVSYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKT 393

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
               +A  +  E+ K G +    T + ++  +   G    A +LF+   + GV  D   Y
Sbjct: 394 LEHEKATNLIQEMKKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLY 453

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           + +  AY +A +    ++LL  +++   +P
Sbjct: 454 QTMIVAYERAGLVAHAKRLLHELKRPDNIP 483



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 141/298 (47%), Gaps = 7/298 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ S   PD   YN++I        KAK   +
Sbjct: 203 GDLVLYSNLIDLARKLSDYSKAISIFSRLKASTISPDLIAYNSMINVF----GKAKLFRE 258

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A    Q+M+     +P+ V+Y+ LL      +   +  +LF E++E+    D+ T N ++
Sbjct: 259 ARLLLQEMRD-NAVQPDTVSYSTLLAIYVDNQKFVEALSLFFEMNEAKCPLDLTTCNIMI 317

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE- 187
           D YG+  M KE + +   M+    +P+++++N L+  YG+   F +   +F+ LM SK+ 
Sbjct: 318 DVYGQLHMPKEADRLFWSMRKMGIQPNVVSYNTLLRVYGEADLFGEAIHLFR-LMQSKDV 376

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +  + T+N+MI  YGK     KA  + Q+M      P+ ITY  II+++     + RA  
Sbjct: 377 QQNVVTYNTMINIYGKTLEHEKATNLIQEMKKRGIEPNAITYSTIISIWEKAGKLDRAAI 436

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           +F +L   G  +       M+ AY   GL   A  L          P  +   +L +A
Sbjct: 437 LFQKLRSSGVRIDEVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIGILARA 494



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 151/357 (42%), Gaps = 37/357 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I V GK    R A  L  EMR++  +PD   Y+ L+  ++      +   +A
Sbjct: 239 DLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDN----QKFVEA 294

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  F +M    +C  ++ T NI++    Q     + + LF  + +  + P++ +YN ++ 
Sbjct: 295 LSLFFEMNE-AKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVVSYNTLLR 353

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YG+  +  E   +   M+S   + +++T+N +I+ YGK    +K   + + +     +P
Sbjct: 354 VYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMKKRGIEP 413

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T++++I  + KA    +A  +FQK+ +       + Y+ +I  Y     V+ A+ + 
Sbjct: 414 NAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERAGLVAHAKRLL 473

Query: 250 DELSK---LGKDM----------------------------KVSTLNAMLEAYCMNGLPT 278
            EL +   + +D                              +S    M+  +  N    
Sbjct: 474 HELKRPDNIPRDTAIGILARAGRIEEATWVFRQAFDAREVKDISVFGCMINLFSKNKKYG 533

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV-PNKRFF 334
               +FE    +G  PDS    L+  A+ K    +    L ++M + G V P++  F
Sbjct: 534 NVVEVFEKMRVVGYFPDSDVIALVLNAFGKLREFDKADALYRQMHEEGCVFPDEVHF 590



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 135/327 (41%), Gaps = 19/327 (5%)

Query: 6   WYIADTGI------YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT 59
           W +   GI      Y+ L+ V G+      A+ LF  M++   + +   YN +I  +  T
Sbjct: 334 WSMRKMGIQPNVVSYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKT 393

Query: 60  RDKAKALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
            +  KA        Q+MK  G+E   PN +TY+ ++    +A  +D+   LF++L  S +
Sbjct: 394 LEHEKAT----NLIQEMKKRGIE---PNAITYSTIISIWEKAGKLDRAAILFQKLRSSGV 446

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
             D   Y  ++ AY + G++   + +L  +K    +PD I  +  I    +    ++   
Sbjct: 447 RIDEVLYQTMIVAYERAGLVAHAKRLLHELK----RPDNIPRDTAIGILARAGRIEEATW 502

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           VF+    ++E   +  F  MI  + K +  G    VF+KM  + Y P       ++  +G
Sbjct: 503 VFRQAFDAREVKDISVFGCMINLFSKNKKYGNVVEVFEKMRVVGYFPDSDVIALVLNAFG 562

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
                 +A  ++ ++ + G          ML  Y         + LFE   +        
Sbjct: 563 KLREFDKADALYRQMHEEGCVFPDEVHFQMLSLYGARKDFVMVESLFEKLDSNPNINKKE 622

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQ 324
            + ++   Y +A+      +++ RM Q
Sbjct: 623 LHLVVASIYERADRLNDASRIMNRMNQ 649


>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 153/316 (48%), Gaps = 5/316 (1%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S +++  G++G    A   FS +++ G +P    YNAL    LH   KA   ++AL    
Sbjct: 297 STVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNAL----LHVFGKAGIFSEALSVLS 352

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M+    C P+ VTYN ++ A  +A   ++   +   +    + P+  TY  +++AYG+ 
Sbjct: 353 EME-ENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRV 411

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G I +   +  +M    C P++ T+N ++   GK+   ++M ++   +  +   P   T+
Sbjct: 412 GDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITW 471

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N+M+   GK  +      VF++M    + P   T+  +I+ YG C + + A ++ +E+ K
Sbjct: 472 NTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIK 531

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
            G    ++T NA+L A    G    A+ +  +  N G  P  ++Y L+  +Y K    + 
Sbjct: 532 AGFSPCINTYNALLNALARRGDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGNVKG 591

Query: 315 VQKLLKRMEQNGIVPN 330
           ++ + K +    I P+
Sbjct: 592 IEMIEKSIYDGDIFPS 607



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 161/359 (44%), Gaps = 17/359 (4%)

Query: 6   WYIADTGIYSK---------LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH 56
           W + + GI ++         ++ ++G++ Q  +A  LF  +       D   Y    T  
Sbjct: 173 WSVLNLGIANEKIDRHAIELMVRILGRESQHTVASKLFDVIPLDDYVLDVRAY----TTI 228

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHES 115
           LH   +     +A+  F++M       P++VTYN++L    +  R+ D++  L  E+   
Sbjct: 229 LHAYSRTGKYHRAIEIFERMN-ESGLSPSLVTYNVMLDVYGKMGRSWDKILELLDEMRSR 287

Query: 116 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 175
            L  D +T + V+ A G+ G+I E     S +KS   KP  +T+N L+  +GK   F + 
Sbjct: 288 GLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGKAGIFSEA 347

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
             V   +  +   P   T+N ++  Y +A    +   V   M +    P+ +TY  II  
Sbjct: 348 LSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINA 407

Query: 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           YG   ++ +A E+FD++ +LG    V+T NA+L       L  E   +  +    G +P+
Sbjct: 408 YGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPN 467

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAK 354
             T+  +     K  M + V ++ + M+  G  P++  F   +  +     GS + +AK
Sbjct: 468 HITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGR--CGSNNDAAK 524



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 152/351 (43%), Gaps = 40/351 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I   G+ G    A+ +F +M   GC P+ + YNA++   L  +  ++ + K LG+ 
Sbjct: 401 YTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVL-GMLGKKSLSEEMMKILGHM 459

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL--------------------- 112
            K+ G   C PN +T+N +L  C +      VN +F+E+                     
Sbjct: 460 -KLNG---CSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGR 515

Query: 113 ----------HESIL----APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
                     HE ++    +P I TYN +++A  + G  K  ESV+  M++   +P   +
Sbjct: 516 CGSNNDAAKMHEEMIKAGFSPCINTYNALLNALARRGDWKAAESVILDMRNKGFRPSETS 575

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           ++L++ SY K      +E + KS+      P+     ++++   K R     E  FQ + 
Sbjct: 576 YSLMVHSYAKGGNVKGIEMIEKSIYDGDIFPSWMLLRTLVLANFKCRSLTGMERAFQALQ 635

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
              Y P  +    +++++   +   RA E+   +   G    + T N++++ Y   G   
Sbjct: 636 KHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPDLVTHNSLMDMYARGGDCW 695

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           +A+ +       G  PD  +Y  + K + +  + +   ++L  M   G+ P
Sbjct: 696 KAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQEGIRILSEMTSIGVGP 746



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 138/321 (42%), Gaps = 11/321 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH---TRDKAKALAKAL 70
           ++ ++A+ GKKG  +    +F EM+N G  PD   +N LI+A+       D AK   + +
Sbjct: 471 WNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMI 530

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
                  G   C   I TYN LL A A+  +     ++  ++      P   +Y+ ++ +
Sbjct: 531 -----KAGFSPC---INTYNALLNALARRGDWKAAESVILDMRNKGFRPSETSYSLMVHS 582

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           Y K G +K +E +   +      P  +    L+ +  K ++   ME+ F++L     KP 
Sbjct: 583 YAKGGNVKGIEMIEKSIYDGDIFPSWMLLRTLVLANFKCRSLTGMERAFQALQKHGYKPD 642

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           L   NSM+  + K  +  +A  + + +      P  +T+  ++ MY    +  +A E+  
Sbjct: 643 LVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPDLVTHNSLMDMYARGGDCWKAEEVLR 702

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            L   G    + + N +++ +C  GL  E   +     ++GV P   TY      Y    
Sbjct: 703 MLQTSGGKPDLVSYNTVIKGFCRKGLMQEGIRILSEMTSIGVGPCIFTYNTFISGYAAQG 762

Query: 311 MKELVQKLLKRMEQNGIVPNK 331
           M   +  ++  M  +   PN+
Sbjct: 763 MFTEINDVISYMIVHNCRPNE 783



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 124/272 (45%), Gaps = 33/272 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--------LHTRDKA-- 63
           Y+ L+  + ++G  + A  +  +MRN G RP  + Y+ ++ ++        +   +K+  
Sbjct: 541 YNALLNALARRGDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGNVKGIEMIEKSIY 600

Query: 64  -----------KALAKALGYFQKMKGMERC---------KPNIVTYNILLRACAQARNVD 103
                      + L  A    + + GMER          KP++V  N +L   A+    D
Sbjct: 601 DGDIFPSWMLLRTLVLANFKCRSLTGMERAFQALQKHGYKPDLVLCNSMLSIFAKNNMYD 660

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           + + + + +H++ L PD+ T+N +MD Y + G   + E VL  ++++  KPD++++N +I
Sbjct: 661 RAHEMLRLIHDAGLQPDLVTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVI 720

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
             + ++    +  ++   +      P + T+N+ I  Y    +  +   V   M      
Sbjct: 721 KGFCRKGLMQEGIRILSEMTSIGVGPCIFTYNTFISGYAAQGMFTEINDVISYMIVHNCR 780

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKL 255
           P+ +TY+  I   GYC    R  E  D +SK+
Sbjct: 781 PNELTYK--IVADGYC-KARRYDEAIDFVSKI 809



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 84/172 (48%), Gaps = 5/172 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++  Y  D  + + ++++  K      A  +   + ++G +PD   +N+L+  +    D 
Sbjct: 635 QKHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPDLVTHNSLMDMYARGGDC 694

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            KA  + L   Q   G    KP++V+YN +++   +   + +   +  E+    + P I+
Sbjct: 695 WKA-EEVLRMLQTSGG----KPDLVSYNTVIKGFCRKGLMQEGIRILSEMTSIGVGPCIF 749

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
           TYN  +  Y   GM  E+  V+S M  + C+P+ +T+ ++ D Y K + +D+
Sbjct: 750 TYNTFISGYAAQGMFTEINDVISYMIVHNCRPNELTYKIVADGYCKARRYDE 801


>gi|15242530|ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39980, chloroplastic; Flags: Precursor
 gi|10176990|dbj|BAB10222.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007115|gb|AED94498.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 678

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 128/247 (51%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P++  YN++LR   +A+  D  + LF E+ +  LAPD YTY+ ++ ++GK GM     S 
Sbjct: 153 PSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSW 212

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L +M+ ++   D++ ++ LI+   +   + K   +F  L  S   P L  +NSMI  YGK
Sbjct: 213 LQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGK 272

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A+L  +A  + ++M      P+ ++Y  ++++Y        A  +F E+ ++   + ++T
Sbjct: 273 AKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTT 332

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N M++ Y    +  EAD LF +   M + P+  +Y  + + Y +A +      L + M+
Sbjct: 333 CNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQ 392

Query: 324 QNGIVPN 330
           +  I  N
Sbjct: 393 RKDIEQN 399



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 155/329 (47%), Gaps = 5/329 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 182 RQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDY 241

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +   L KE++E+ + P+  
Sbjct: 242 SKAIS----IFSRLKR-SGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTV 296

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV + MK   C  D+ T N++ID YG+     + +++F SL
Sbjct: 297 SYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSL 356

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG+A L G+A ++F+ M       + +TY  +I +YG     
Sbjct: 357 RKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEH 416

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A  LF+   + GV  D   Y+ +
Sbjct: 417 EKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTM 476

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             AY +  +    ++LL  ++    +P +
Sbjct: 477 IVAYERVGLMGHAKRLLHELKLPDNIPRE 505



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 141/297 (47%), Gaps = 5/297 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  +      A+ +FS ++ SG  PD   YN++I  +     KAK   +
Sbjct: 223 GDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVY----GKAKLFRE 278

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A    ++M       PN V+Y+ LL    +     +  ++F E+ E   A D+ T N ++
Sbjct: 279 ARLLIKEMNEAG-VLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMI 337

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+  M+KE + +   ++    +P+++++N ++  YG+ + F +   +F+ +     +
Sbjct: 338 DVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIE 397

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+N+MI  YGK     KA  + Q+M +    P+ ITY  II+++G    + RA  +
Sbjct: 398 QNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATL 457

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           F +L   G ++       M+ AY   GL   A  L          P  +   +L KA
Sbjct: 458 FQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKA 514



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 151/336 (44%), Gaps = 9/336 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + +T  YS L++V  +  +   A+ +F+EM+   C  D +  N +I  +     +   + 
Sbjct: 292 LPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVY----GQLDMVK 347

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A   F  ++ M+  +PN+V+YN +LR   +A    +   LF+ +    +  ++ TYN +
Sbjct: 348 EADRLFWSLRKMD-IEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTM 406

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  YGK    ++  +++  M+S   +P+ IT++ +I  +GK    D+   +F+ L  S  
Sbjct: 407 IKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGV 466

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +     + +MI+ Y +  L G A+ +  ++      P  I  E  IT+         A  
Sbjct: 467 EIDQVLYQTMIVAYERVGLMGHAKRLLHELK----LPDNIPRETAITILAKAGRTEEATW 522

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F +  + G+   +S    M+  Y  N        +FE     G  PDS+   ++  AY 
Sbjct: 523 VFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYG 582

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
           K    E    + + M++ G V       + L  +SS
Sbjct: 583 KQREFEKADTVYREMQEEGCVFPDEVHFQMLSLYSS 618



 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 19/174 (10%)

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
           +K  P++  +N ++ N  +A+    A  +F +M      P   TY  +IT +G       
Sbjct: 149 AKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDS 208

Query: 245 AREIFD--ELSKLGKDMKV-STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           A       E  ++  D+ + S L  +    C     ++A  +F      G+TPD   Y  
Sbjct: 209 ALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDY---SKAISIFSRLKRSGITPDLVAYNS 265

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN-------------KRFFLEALETFS 342
           +   Y KA +    + L+K M + G++PN                FLEAL  F+
Sbjct: 266 MINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFA 319


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 152/341 (44%), Gaps = 9/341 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           + K R    D+  Y  LI+ M K G+   A  +  +M+  G  P    YN LI  + +  
Sbjct: 296 IMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKG 355

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           D    L KA GY  +M       P + TYN+L+ A      +D+ + + K++ +S + PD
Sbjct: 356 D----LVKAFGYRDEMV-RRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPD 410

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TYN +++ Y + G  K+  ++   M S   +P ++T+  LI    KR      + +F+
Sbjct: 411 SITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFE 470

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC- 239
            ++     P L  FN++I  +       +A  + ++M      P  +TY  +  M G C 
Sbjct: 471 KIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTL--MQGRCR 528

Query: 240 -DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              V  ARE+  E+ + G      + N ++  Y   G   +A  + +   ++G  P   T
Sbjct: 529 EGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLT 588

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
           Y  L +   K    +L ++LLK M   GI P+   +   +E
Sbjct: 589 YNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIE 629



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 147/317 (46%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ +I V+ K+G+ + A      M N G +P+   YN +I  +  +R + +  A+ +   
Sbjct: 239 FNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYC-SRGRVEG-ARMVLDI 296

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K +G+E   P+  TY  L+    +   +++ + + +++ E  L P   TYN ++D Y  
Sbjct: 297 MKNRGVE---PDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCN 353

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + +       M      P + T+NLLI +       D+ + + K +  S   P   T
Sbjct: 354 KGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSIT 413

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N +I  Y +     KA  +  +M +    P+ +TY  +I +    + +  A ++F+++ 
Sbjct: 414 YNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKII 473

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G    +   NA+++ +C NG    A  L +      + PD  TY  L +   +    E
Sbjct: 474 REGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVE 533

Query: 314 LVQKLLKRMEQNGIVPN 330
             ++LLK M++ GI P+
Sbjct: 534 EARELLKEMKRRGIRPD 550



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 130/297 (43%), Gaps = 9/297 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I     +G+   A  +   M+N G  PD   Y +LI+       K   L +A G  
Sbjct: 274 YNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMC----KGGKLEEASGIL 329

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KMK +    P  VTYN L+       ++ +      E+    + P + TYN ++ A   
Sbjct: 330 EKMKEIGLL-PTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFL 388

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + E + ++  M  +   PD IT+N+LI+ Y +     K   +   ++    +PTL T
Sbjct: 389 EGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVT 448

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDE 251
           + S+I    K      A+ +F+K+     +P  I +  +I   G+C   N+ RA  +  E
Sbjct: 449 YTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALID--GHCANGNLDRAFALLKE 506

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           + K        T N +++  C  G   EA  L +     G+ PD  +Y  L   Y+K
Sbjct: 507 MDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSK 563



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 143/335 (42%), Gaps = 13/335 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M K++  +     ++ ++++  K  QT     L++EM     +     +N +I       
Sbjct: 191 MMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLC--- 247

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAP 119
            K   L KA  +   M+ +   KPN+VTYN ++   C++ R V+    +   +    + P
Sbjct: 248 -KEGKLKKAKDFIGSMENLG-VKPNVVTYNTVIHGYCSRGR-VEGARMVLDIMKNRGVEP 304

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D YTY  ++    K G ++E   +L +MK     P  +T+N LID Y  +    K     
Sbjct: 305 DSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYR 364

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGK---AEYVFQKMTAMKYTPSFITYECIITMY 236
             ++     PT+ T+N +I       L+GK   A+ + + M      P  ITY  +I  Y
Sbjct: 365 DEMVRRAILPTVSTYNLLI---HALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGY 421

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
             C N  +A  + DE+   G    + T  +++           AD LFE     G +PD 
Sbjct: 422 CRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDL 481

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             +  L   +      +    LLK M++  IVP++
Sbjct: 482 IMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDE 516



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 5/240 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D+  Y+ LI    + G  + A  L  EM + G +P    Y +LI   L  R++ KA  
Sbjct: 408 VPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYV-LSKRNRMKA-- 464

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            A   F+K+   E   P+++ +N L+       N+D+  AL KE+ +  + PD  TYN +
Sbjct: 465 -ADDLFEKII-REGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTL 522

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           M    + G ++E   +L  MK    +PD I++N LI  Y KR   +    +   ++    
Sbjct: 523 MQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGF 582

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            PTL T+N++I    K +    AE + ++M +   TP   TY  +I   G  D+ S A +
Sbjct: 583 NPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSEASD 642



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 77/173 (44%)

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           I F++LI +  + +  D   + F  +      P + TFN+M+  + K         ++ +
Sbjct: 167 IVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAE 226

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M  +K   +  T+  +I +      + +A++    +  LG    V T N ++  YC  G 
Sbjct: 227 MFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGR 286

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
              A ++ +   N GV PDS TY  L     K    E    +L++M++ G++P
Sbjct: 287 VEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLP 339


>gi|302794005|ref|XP_002978767.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
 gi|300153576|gb|EFJ20214.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
          Length = 521

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 145/316 (45%), Gaps = 14/316 (4%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
            + V+    + R A  LF ++    C P+   YN +I  +     KA   +KA   ++ M
Sbjct: 180 FLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVIY----GKAGEPSKAEMLYRSM 235

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +    C PNI T+  L+ A A+     +    F +L E    PD Y YN +M+AY + G 
Sbjct: 236 R-RAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGS 294

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
                 +   M+ N C PD ++ N+LI++YG+   ++  E++FKS+  +   P L +   
Sbjct: 295 PAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNML 354

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           ++  Y +A    +AE +   M      P  + Y  +I  YG      R  ++   L+K+ 
Sbjct: 355 LLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNALINAYGVS---GRHEDMEALLAKMV 411

Query: 257 KDMK------VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           K         + T N +++ Y   G   +A+ LF+    + + PD++T+  L   Y K  
Sbjct: 412 KSSSKQTKPDIGTYNTLIQVYAQAGFIPKAEELFQGLARLKLVPDATTWTALMGGYAKKK 471

Query: 311 MKELVQKLLKRMEQNG 326
           +      +LK+M ++G
Sbjct: 472 LYRKCTSILKKMLESG 487



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 144/301 (47%), Gaps = 8/301 (2%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF +M+  G  P P   N      LH  + AK   +A   F+ ++  E C+PNI TYN +
Sbjct: 161 LFVQMQKRGYSPGPLACNTF----LHVLEDAKEYRRAEALFRDLEKYE-CEPNIDTYNRM 215

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +A    +   L++ +  ++  P+I T+  +M+A+ + G+ +E E    +++    
Sbjct: 216 IVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDY 275

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           KPD   +N L+++Y +  +     ++F+++  +   P   + N +I  YG+A L   AE 
Sbjct: 276 KPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEK 335

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +F+ M +  ++P+  +   +++ Y     V  A E+   + + G        NA++ AY 
Sbjct: 336 IFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNALINAYG 395

Query: 273 MNGLPTEADLLFEN---SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           ++G   + + L      S +    PD  TY  L + Y +A      ++L + + +  +VP
Sbjct: 396 VSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPKAEELFQGLARLKLVP 455

Query: 330 N 330
           +
Sbjct: 456 D 456



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 118/248 (47%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P++  YN+L+ A  ++ N++     F  + E++  P+  T+  +++ Y   G  ++ E 
Sbjct: 101 RPDLGCYNLLIDAYGKSLNIEDAEKTFNRMQEALCVPNEETFGVLINGYRLAGSFEKAEE 160

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +  +M+     P  +  N  +      + + + E +F+ L   + +P + T+N MI+ YG
Sbjct: 161 LFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVIYG 220

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           KA    KAE +++ M      P+  T+  ++  +        A   FD+L +        
Sbjct: 221 KAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDHY 280

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
             NA++EAY   G P  A  +F+     G  PD+ ++ +L  AY +A + E  +K+ K M
Sbjct: 281 AYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSM 340

Query: 323 EQNGIVPN 330
           +  G  PN
Sbjct: 341 QSAGFSPN 348



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 144/304 (47%), Gaps = 8/304 (2%)

Query: 27  TRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI 86
           T++  W+   ++ +  RPD   YN LI A+     K+  +  A   F +M+    C PN 
Sbjct: 88  TQMCEWV---LQGTAFRPDLGCYNLLIDAY----GKSLNIEDAEKTFNRMQEA-LCVPNE 139

Query: 87  VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 146
            T+ +L+     A + ++   LF ++ +   +P     N  +         +  E++   
Sbjct: 140 ETFGVLINGYRLAGSFEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRD 199

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           ++  +C+P+I T+N +I  YGK     K E +++S+  +   P + TF +++  + +  L
Sbjct: 200 LEKYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGL 259

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
             +AE  F K+    Y P    Y  ++  Y    + + A EIF  + + G      + N 
Sbjct: 260 YREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNI 319

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           ++ AY   GL  +A+ +F++  + G +P+  +  LL  AY +A   E  ++L+  ME++G
Sbjct: 320 LINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDG 379

Query: 327 IVPN 330
             P+
Sbjct: 380 TKPD 383



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 134/313 (42%), Gaps = 5/313 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D G Y+ LI   GK      A   F+ M+ + C P+   +  LI  +      A +  KA
Sbjct: 103 DLGCYNLLIDAYGKSLNIEDAEKTFNRMQEALCVPNEETFGVLINGY----RLAGSFEKA 158

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F +M+      P  +  N  L     A+   +  ALF++L +    P+I TYN ++ 
Sbjct: 159 EELFVQMQ-KRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIV 217

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK G   + E +   M+   C P+I TF  L++++ ++  + + E+ F  L     KP
Sbjct: 218 IYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKP 277

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               +N+++  Y +      A  +FQ M      P  +++  +I  YG       A +IF
Sbjct: 278 DHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIF 337

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             +   G    + +   +L AY   G   EA+ L       G  PD+  Y  L  AY  +
Sbjct: 338 KSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNALINAYGVS 397

Query: 310 NMKELVQKLLKRM 322
              E ++ LL +M
Sbjct: 398 GRHEDMEALLAKM 410



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 148/313 (47%), Gaps = 8/313 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+++I + GK G+   A  L+  MR + C P+   + AL+ A      +     +A  YF
Sbjct: 212 YNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFA----RQGLYREAERYF 267

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K++  +  KP+   YN L+ A +Q  +      +F+ +  +   PD  ++N +++AYG+
Sbjct: 268 DKLQEFDY-KPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGR 326

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G+ ++ E +   M+S    P++ +  LL+ +Y +    ++ E++  ++     KP    
Sbjct: 327 AGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLI 386

Query: 194 FNSMIINYGKARLQGKAEYVFQKM---TAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           +N++I  YG +      E +  KM   ++ +  P   TY  +I +Y     + +A E+F 
Sbjct: 387 YNALINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPKAEELFQ 446

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            L++L      +T  A++  Y    L  +   + +     G   D+ T ++L+ A     
Sbjct: 447 GLARLKLVPDATTWTALMGGYAKKKLYRKCTSILKKMLESGCRADAVTARVLFSACRSPE 506

Query: 311 MKELVQKLLKRME 323
             E V +L++ ++
Sbjct: 507 QVEQVTQLMESLQ 519



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 106/214 (49%), Gaps = 8/214 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D   Y+ L+    + G    A+ +F  M+ +GC PD   +N LI A+     +A   
Sbjct: 275 YKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAY----GRAGLY 330

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             A   F+ M+      PN+ +  +LL A A+A  V++   L   +      PD   YN 
Sbjct: 331 EDAEKIFKSMQSAG-FSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNA 389

Query: 127 VMDAYGKNGMIKEMESVLSRM---KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           +++AYG +G  ++ME++L++M    S Q KPDI T+N LI  Y +     K E++F+ L 
Sbjct: 390 LINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPKAEELFQGLA 449

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
             K  P   T+ +++  Y K +L  K   + +KM
Sbjct: 450 RLKLVPDATTWTALMGGYAKKKLYRKCTSILKKM 483


>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
          Length = 702

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 144/316 (45%), Gaps = 5/316 (1%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S +IA  G+ G    A+  F +++  G  P    YNAL    L    KA    +AL   +
Sbjct: 164 STVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNAL----LQVFGKAGNYTEALRVLK 219

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M+    C+P+ VTYN L    A+A   ++       +    L P+ +TYN VM AY   
Sbjct: 220 EMED-SGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANV 278

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G + E  ++  RMK N   P++ T+NL+    GK+  F  M ++ + +  S   P   T+
Sbjct: 279 GRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTW 338

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N+M+   GK  ++     V   M +     S  TY  +I+ YG C + + A +++DE+  
Sbjct: 339 NTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMIS 398

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
            G    ++T NA+L      G  + A  +       G  P+  +Y LL + Y K      
Sbjct: 399 SGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAG 458

Query: 315 VQKLLKRMEQNGIVPN 330
           ++ + K +    I P+
Sbjct: 459 IESIEKEVYVGTIFPS 474



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 141/322 (43%), Gaps = 8/322 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++  + + G+   A+ LF+E+R  G  P    YN ++  +       ++  + 
Sbjct: 88  DVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRM---GRSWPRI 144

Query: 70  LGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +   ++M+  G+E   P+  T + ++ AC +   +DQ  A F++L      P + TYN +
Sbjct: 145 VALLEEMRAAGVE---PDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNAL 201

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  +GK G   E   VL  M+ + C+PD +T+N L  +Y +   F++  +   ++     
Sbjct: 202 LQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGL 261

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P   T+N+++  Y       +A  +F +M    Y P+  TY  I  M G     +   E
Sbjct: 262 LPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLE 321

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + +E+S+ G      T N ML      G+      +     + GV     TY  L  AY 
Sbjct: 322 MLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYG 381

Query: 308 KANMKELVQKLLKRMEQNGIVP 329
           +   +    K+   M  +G  P
Sbjct: 382 RCGSRTYAFKMYDEMISSGFTP 403



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 154/330 (46%), Gaps = 11/330 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  Y+ +   Y+ +  ++GKK +    + +  EM  SGC P+   +N ++ A    R  
Sbjct: 292 KKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTML-AVCGKRGM 350

Query: 63  AKALAKALGYFQKMKGMERCKPNIV--TYNILLRACAQARNVDQVNALFKELHESILAPD 120
              + + L       GM+ C   +   TYN L+ A  +  +      ++ E+  S   P 
Sbjct: 351 EDYVTRVL------NGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPC 404

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TYN +++   + G     +S++S+M  N  KP+  +++LL+  Y K      +E + K
Sbjct: 405 LTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEK 464

Query: 181 SLMHSKEKPTLPTFNSMII-NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
            +      P+     +++I N+   RL+G  E  FQ++ A  Y P  + +  ++ MY   
Sbjct: 465 EVYVGTIFPSWVILRTLVIANFKCRRLEG-VEKAFQEVKAQGYKPDLVIFNSMLAMYAKN 523

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
              S+A E+FD + + G    + T N++++ Y  +    EA+ + +   +  V PD  +Y
Sbjct: 524 GLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSY 583

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             +   + K  + +  Q++L  M  +G+ P
Sbjct: 584 NTVINGFCKQGLIKEAQRILSEMIADGMAP 613



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 154/349 (44%), Gaps = 23/349 (6%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K R ++     Y+ L+ V GK G    A+ +  EM +SGC+PD   YN L          
Sbjct: 187 KARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNEL---------- 236

Query: 63  AKALAKALGYFQKM---------KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH 113
           A   A+A G+F++          KG+    PN  TYN ++ A A    VD+  ALF  + 
Sbjct: 237 AGTYARA-GFFEEAAKCLDTMTSKGL---LPNTFTYNTVMTAYANVGRVDEALALFDRMK 292

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
           ++   P++ TYN +    GK      M  +L  M  + C P+ +T+N ++   GKR   D
Sbjct: 293 KNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMED 352

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
            + +V   +     + +  T+N++I  YG+   +  A  ++ +M +  +TP   TY  ++
Sbjct: 353 YVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALL 412

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
            +     + S A+ I  ++ K G      + + +L+ Y   G     + + +  +   + 
Sbjct: 413 NVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIF 472

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           P     + L  A  K    E V+K  + ++  G  P+   F   L  ++
Sbjct: 473 PSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYA 521



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 156/360 (43%), Gaps = 49/360 (13%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMR-NSGCRPDPSVYNALITAHLHTRDKAKALA 67
           AD      ++  +G++GQ  +   L  EM    G R D   Y    T  LH   +A    
Sbjct: 51  ADAAALEMVVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAY----TTVLHALSRAGRYE 106

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHESILAPDIYTYNG 126
           +AL  F +++  +   P IVTYN++L    +  R+  ++ AL +E+  + + PD +T + 
Sbjct: 107 RALQLFAELR-RQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTAST 165

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           V+ A G++G++ +  +    +K+    P ++T+N L+  +GK   + +  +V K +  S 
Sbjct: 166 VIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSG 225

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P   T+N +   Y +A    +A      MT+    P+  TY  ++T Y    NV R  
Sbjct: 226 CQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYA---NVGRV- 281

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
                                           EA  LF+     G  P+ +TY L++   
Sbjct: 282 -------------------------------DEALALFDRMKKNGYVPNVNTYNLIFGML 310

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRSLSTAKS 366
            K +    + ++L+ M ++G  PN+        T+++ LA       +  +TR L+  KS
Sbjct: 311 GKKSRFTAMLEMLEEMSRSGCTPNR-------VTWNTMLAVCGKRGMEDYVTRVLNGMKS 363



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 132/287 (45%), Gaps = 31/287 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA---------- 63
           Y+ L+ V+ ++G    A  + S+M  +G +P+   Y+ L+  +    + A          
Sbjct: 408 YNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVY 467

Query: 64  -----------KALAKALGYFQKMKGMERC---------KPNIVTYNILLRACAQARNVD 103
                      + L  A    ++++G+E+          KP++V +N +L   A+     
Sbjct: 468 VGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYS 527

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +   +F  + +S L+PD+ TYN +MD Y K+    E E +L ++KS+Q KPD++++N +I
Sbjct: 528 KATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVI 587

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           + + K+    + +++   ++     P + T+++++  Y    +  +A  V   M      
Sbjct: 588 NGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLK 647

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
           P  +TY  ++  Y        ARE   E+S   ++     L  MLEA
Sbjct: 648 PMELTYRRVVDSYCKAKRYDEAREFLSEISDTDQNFD-QKLQHMLEA 693



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 147/311 (47%), Gaps = 9/311 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI+  G+ G    A  ++ EM +SG  P  + YNAL+  ++ +R    + A+++   
Sbjct: 373 YNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALL--NVLSRQGDWSTAQSIVSK 430

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
               G    KPN  +Y++LL+  A+  N   + ++ KE++   + P       ++ A  K
Sbjct: 431 MLKNGF---KPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFK 487

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              ++ +E     +K+   KPD++ FN ++  Y K   + K  ++F S+  S   P L T
Sbjct: 488 CRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLIT 547

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDE 251
           +NS++  Y K+    +AE + +++ + +  P  ++Y  +I   G+C    +  A+ I  E
Sbjct: 548 YNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVIN--GFCKQGLIKEAQRILSE 605

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G    V T + ++  Y    +  EA  +     +  + P   TY+ +  +Y KA  
Sbjct: 606 MIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKR 665

Query: 312 KELVQKLLKRM 322
            +  ++ L  +
Sbjct: 666 YDEAREFLSEI 676


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 161/379 (42%), Gaps = 51/379 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  L+  + K G T  A+ L   M    CRP+   YN +I +      K + + +A
Sbjct: 254 DVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLC----KDRQVTEA 309

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F +M  KG+    P+I TYN L+ A         V  L  E+  S + P++  ++ V
Sbjct: 310 FNLFSEMITKGI---SPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTV 366

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +DA  K GMI     V+  M     +PD++T+  L+D +  R   D+  +VF +++H   
Sbjct: 367 VDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGC 426

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P + ++N +I  Y + +   KA  + ++M+        +TY  +I    +   +  A  
Sbjct: 427 VPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIA 486

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMN--------------GLPTEADL----------- 282
           +F E+   G+   + T   +L+  C N              G   +AD+           
Sbjct: 487 LFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMC 546

Query: 283 ----------LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK- 331
                     LF N  + G+ PD  TY ++     K  + +   KL ++M++NG   +  
Sbjct: 547 RAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGC 606

Query: 332 ------RFFLEALETFSSS 344
                 R FL + ETF ++
Sbjct: 607 IYNTIIRGFLRSNETFGAT 625



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 136/317 (42%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++KL+  + K       + L ++M + G  PD    N LI +  H R    A +  L   
Sbjct: 153 FTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFS-VLAKL 211

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+     C+P+  T+N L+R       + +   LF +       PD+ TY  +M+   K
Sbjct: 212 LKLG----CQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCK 267

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G       +L  M    C+P++I +N +IDS  K +   +   +F  ++     P + T
Sbjct: 268 VGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFT 327

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS+I              +  +M   K  P+ + +  ++        ++ A ++ D + 
Sbjct: 328 YNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMI 387

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           K G +  V T  A+++ +C+     EA  +F+   + G  P+  +Y +L   Y +    +
Sbjct: 388 KRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMD 447

Query: 314 LVQKLLKRMEQNGIVPN 330
               LL++M   G++ +
Sbjct: 448 KAMGLLEQMSLQGLIAD 464



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 130/303 (42%), Gaps = 9/303 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A  + +++   GC+PD + +N LI   L    K   + +AL  F K  G E  +P++VTY
Sbjct: 204 AFSVLAKLLKLGCQPDNTTFNTLIRG-LCVEGK---IGEALHLFDKTIG-EGFQPDVVTY 258

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
             L+    +  N      L + + +    P++  YN ++D+  K+  + E  ++ S M +
Sbjct: 259 GTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMIT 318

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
               PDI T+N LI +      +  +  +   +++SK  P +  F++++    K  +   
Sbjct: 319 KGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAI 378

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAM 267
           A  V   M      P  +TY  +  M G+C    +  A ++FD +   G    V + N +
Sbjct: 379 AHDVVDMMIKRGVEPDVVTYTAL--MDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNIL 436

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +  YC      +A  L E     G+  D+ TY  L          +    L   M  +G 
Sbjct: 437 INGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQ 496

Query: 328 VPN 330
           +P+
Sbjct: 497 IPD 499



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 120/276 (43%), Gaps = 5/276 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  +R    D   Y+ L+     + +   A+ +F  M + GC P+   YN LI  +    
Sbjct: 385 MMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYC--- 441

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            + + + KA+G  ++M  ++    + VTYN L+        +    ALF E+  S   PD
Sbjct: 442 -QIQRMDKAMGLLEQMS-LQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPD 499

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TY  ++D   KN  + E   +L  ++ +    DI+ +N+ ID   +    +    +F 
Sbjct: 500 LVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFS 559

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           +L     +P + T+N MI    K  L  +A  +F+KM     +     Y  II  +   +
Sbjct: 560 NLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFLRSN 619

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
               A ++  E+   G    VST   ++E    +GL
Sbjct: 620 ETFGATQLLQEMLAEGFSADVSTTTLIVEMLSDDGL 655



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 113/253 (44%), Gaps = 8/253 (3%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P++ T NIL+ +    R +    ++  +L +    PD  T+N ++      G I E   +
Sbjct: 183 PDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHL 242

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
             +      +PD++T+  L++   K        ++ +S++    +P +  +N++I +  K
Sbjct: 243 FDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCK 302

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL--GKDM-K 260
            R   +A  +F +M     +P   TY  +I  +  C N+   + +   L+++   K M  
Sbjct: 303 DRQVTEAFNLFSEMITKGISPDIFTYNSLI--HALC-NLCEWKHVTTLLNEMVNSKIMPN 359

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT-KANMKELVQKLL 319
           V   + +++A C  G+   A  + +     GV PD  TY  L   +  ++ M E V K+ 
Sbjct: 360 VVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAV-KVF 418

Query: 320 KRMEQNGIVPNKR 332
             M   G VPN R
Sbjct: 419 DTMVHKGCVPNVR 431



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 109/265 (41%), Gaps = 1/265 (0%)

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L  AL  F +M  M    P+ V +  LL + A+ ++   V +L  ++    + PD+YT N
Sbjct: 131 LDDALSSFNRMLHMHP-PPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLN 189

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++++     +    SVL+++    C+PD  TFN LI          +   +F   +  
Sbjct: 190 ILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGE 249

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
             +P + T+ +++    K      A  + + M      P+ I Y  II        V+ A
Sbjct: 250 GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEA 309

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             +F E+   G    + T N+++ A C          L     N  + P+   +  +  A
Sbjct: 310 FNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDA 369

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
             K  M  +   ++  M + G+ P+
Sbjct: 370 LCKEGMIAIAHDVVDMMIKRGVEPD 394



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 84/195 (43%), Gaps = 4/195 (2%)

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           S+ ++M S    PD+ T N+LI+S+   +       V   L+    +P   TFN++I   
Sbjct: 171 SLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGL 230

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDM 259
                 G+A ++F K     + P  +TY  +  M G C   N S A  +   + +     
Sbjct: 231 CVEGKIGEALHLFDKTIGEGFQPDVVTYGTL--MNGLCKVGNTSAAIRLLRSMVQKNCRP 288

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            V   N ++++ C +   TEA  LF      G++PD  TY  L  A       + V  LL
Sbjct: 289 NVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLL 348

Query: 320 KRMEQNGIVPNKRFF 334
             M  + I+PN   F
Sbjct: 349 NEMVNSKIMPNVVVF 363


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 154/322 (47%), Gaps = 15/322 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT---RDKAKALAKAL 70
           YS +I  + K G    A+ LF+EM   G + D   Y+++I    +     D AK L + +
Sbjct: 247 YSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMI 306

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           G            PN+VT++ L+    +   + +   L+ E+    +APD  TY+ ++D 
Sbjct: 307 G--------RNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDG 358

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K   + E   +L  M S  C+P+I+T+++LI+SY K +  D   ++F  +        
Sbjct: 359 FCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVAD 418

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREI 248
             T+N+++  + ++     A+ +FQ+M +    PS +TY   I + G CDN  + +A EI
Sbjct: 419 TVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYG--ILLDGLCDNGELQKALEI 476

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F+++ K    + +   N ++   C      +A  LF +    GV PD  TY ++     K
Sbjct: 477 FEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCK 536

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
                    L ++M+++G  P+
Sbjct: 537 KGSLSEADMLFRKMKEDGCAPS 558



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 138/330 (41%), Gaps = 48/330 (14%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R  I +   +S LI V  K+G+   A  L++EM   G  PD   Y++LI        K  
Sbjct: 308 RNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFC----KEN 363

Query: 65  ALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            L +A      M  KG   C+PNIVTY+IL+ +  +A+ VD    LF E+    L  D  
Sbjct: 364 RLGEANQMLDLMVSKG---CEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTV 420

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++  + ++G +   + +   M S    P ++T+ +L+D         K  ++F+ +
Sbjct: 421 TYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKM 480

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD-- 240
             S+          MI+  G                          Y  II  +G C+  
Sbjct: 481 QKSR----------MILGIG-------------------------IYNIII--HGMCNAS 503

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            V  A  +F  LS  G    V T N M+   C  G  +EAD+LF      G  P   TY 
Sbjct: 504 KVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYN 563

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +L +A+   +      +L++ M+  G   +
Sbjct: 564 ILIRAHLGGSGVISSVELIEEMKMRGFAAD 593



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 142/313 (45%), Gaps = 7/313 (2%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           LI  +  KG+   A+ L   M   GC  +   Y  +    L+   K+   A AL  F+KM
Sbjct: 180 LINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPV----LNRMCKSGNTALALDLFRKM 235

Query: 77  KGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG 135
           +  ER  K ++V Y+I++ +  +  N+D   +LF E+    +  D+  Y+ ++     +G
Sbjct: 236 E--ERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDG 293

Query: 136 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195
              +   +L  M      P+++TF+ LID + K     + ++++  ++     P   T++
Sbjct: 294 RWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYS 353

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
           S+I  + K    G+A  +   M +    P+ +TY  +I  Y     V     +F E+S  
Sbjct: 354 SLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSK 413

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
           G      T N +++ +C +G    A  LF+   + GV P   TY +L          +  
Sbjct: 414 GLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKA 473

Query: 316 QKLLKRMEQNGIV 328
            ++ ++M+++ ++
Sbjct: 474 LEIFEKMQKSRMI 486



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 145/324 (44%), Gaps = 11/324 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA-HLHTRDKAKALAK 68
           +T  +S LI     +G+   A+ L   M     RP+    N LI    L  R     + +
Sbjct: 138 NTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGR-----VTE 192

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL    +M     C+ N +TY  +L    ++ N      LF+++ E  +   +  Y+ V+
Sbjct: 193 ALVLIDRMVKYG-CEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVI 251

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D+  K+G + +  S+ + M+    K D++ ++ +I        +D   ++ + ++     
Sbjct: 252 DSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNII 311

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAR 246
           P + TF+++I  + K     +A+ ++ +M A    P  ITY  +I   G+C  + +  A 
Sbjct: 312 PNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLID--GFCKENRLGEAN 369

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           ++ D +   G +  + T + ++ +YC          LF    + G+  D+ TY  L + +
Sbjct: 370 QMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGF 429

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            ++    + ++L + M   G+ P+
Sbjct: 430 CQSGKLNVAKELFQEMVSRGVPPS 453



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/306 (19%), Positives = 133/306 (43%), Gaps = 9/306 (2%)

Query: 41  GCRPDPSVYNALITAH-LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQ 98
           G  P+   ++ LI    L  R     +++A+    +M  M+  +PN+VT N L+   C +
Sbjct: 134 GFEPNTITFSTLINGFCLEGR-----VSEAVALVDRMVEMKY-RPNVVTVNTLINGLCLK 187

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
            R  + +  + + +     A +I TY  V++   K+G       +  +M+    K  ++ 
Sbjct: 188 GRVTEALVLIDRMVKYGCEANEI-TYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQ 246

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           ++++IDS  K    D    +F  +     K  +  ++S+I              + ++M 
Sbjct: 247 YSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMI 306

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
                P+ +T+  +I ++     +  A+E+++E+   G      T +++++ +C      
Sbjct: 307 GRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLG 366

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           EA+ + +   + G  P+  TY +L  +Y KA   +   +L   +   G+V +   +   +
Sbjct: 367 EANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLV 426

Query: 339 ETFSSS 344
           + F  S
Sbjct: 427 QGFCQS 432



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 59/318 (18%), Positives = 132/318 (41%), Gaps = 10/318 (3%)

Query: 24  KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK 83
           KG  R+++  +S +  +       + N ++   ++         +A+  F+ M    R  
Sbjct: 17  KGTLRISLLHYSCISEAKVSYKERLRNGIVDIKVN---------EAIDLFESMI-QSRPL 66

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+++ ++ L  A A+ +  D V    KE+  + +  ++YT N +++ + +   +    SV
Sbjct: 67  PSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSV 126

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           + R      +P+ ITF+ LI+ +       +   +   ++  K +P + T N++I     
Sbjct: 127 VGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCL 186

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
                +A  +  +M       + ITY  ++       N + A ++F ++ +      V  
Sbjct: 187 KGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQ 246

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            + ++++ C +G   +A  LF      G+  D   Y  +          +   K+L+ M 
Sbjct: 247 YSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMI 306

Query: 324 QNGIVPNKRFFLEALETF 341
              I+PN   F   ++ F
Sbjct: 307 GRNIIPNVVTFSALIDVF 324



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 102/242 (42%), Gaps = 14/242 (5%)

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTY-----NGVMDAYGKNGMIKEMESVLSRM 147
           L+A    + +D+       LH S ++    +Y     NG++D       + E   +   M
Sbjct: 6   LKASNFTQIIDKGTLRISLLHYSCISEAKVSYKERLRNGIVDIK-----VNEAIDLFESM 60

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
             ++  P +I F+ L  +  +R+ +D +    K +  +  +  + T N MI  + + R  
Sbjct: 61  IQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNIMINCFCRKRKL 120

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLN 265
             A  V  +     + P+ IT+  +I   G+C    VS A  + D + ++     V T+N
Sbjct: 121 LFAFSVVGRALKFGFEPNTITFSTLIN--GFCLEGRVSEAVALVDRMVEMKYRPNVVTVN 178

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            ++   C+ G  TEA +L +     G   +  TY  +     K+    L   L ++ME+ 
Sbjct: 179 TLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEER 238

Query: 326 GI 327
            I
Sbjct: 239 SI 240



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 6/128 (4%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQK R  I   GIY+ +I  M    +   A  LF  +   G +PD   YN +I       
Sbjct: 480 MQKSRM-ILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLC--- 535

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K  +L++A   F+KMK  + C P+  TYNIL+RA      V     L +E+     A D
Sbjct: 536 -KKGSLSEADMLFRKMKE-DGCAPSDCTYNILIRAHLGGSGVISSVELIEEMKMRGFAAD 593

Query: 121 IYTYNGVM 128
             T   V+
Sbjct: 594 ASTIKMVV 601


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 153/322 (47%), Gaps = 5/322 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D   Y  +I  + K G T  A+ +FSEM  +G  PD  VY++L+        +   L +
Sbjct: 144 GDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLC----RFGRLKE 199

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL +F++M+G      ++ TYN L+   ++A    +V      + +   +PD +T+  ++
Sbjct: 200 ALEFFKEMEG-RGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILI 258

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D   K G + E + +L  M     +PDI+T+N L++        +   ++F+SL     K
Sbjct: 259 DGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIK 318

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + ++N +I  Y K +   +A  +F++M      PS +TY  +I        V  A+++
Sbjct: 319 LNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKL 378

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F E+   G+ +K+ST   +L+  C NG   EA  LF++       P+   + +L     +
Sbjct: 379 FVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCR 438

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
           A   E   K    + +NG+ P+
Sbjct: 439 AGKLEEAWKQFDEISKNGLEPD 460



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 125/297 (42%), Gaps = 6/297 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ LF EM   G   D   Y  LI        KA+    A+   +KMKG   CK ++ TY
Sbjct: 96  AVQLFDEMTEKGLFGDAKTYGILINGLC----KARKTGLAIKLHEKMKG--NCKGDVFTY 149

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
            +++ +  +     +   +F E+  + + PD+  Y+ +MD   + G +KE       M+ 
Sbjct: 150 GMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEG 209

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
                D+ T+N LI    +   + ++      ++     P   TF  +I    K    G+
Sbjct: 210 RGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGE 269

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A+ + + M      P  +TY  ++        +  A ++F+ L+  G  + V + N ++ 
Sbjct: 270 AQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILIN 329

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
            YC +    EA  LFE     G+ P + TY  L  A  ++      QKL   M+  G
Sbjct: 330 GYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCG 386



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 149/359 (41%), Gaps = 40/359 (11%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D  +YS L+  + + G+ + A+  F EM   G   D   YN+LI    H   +A  L 
Sbjct: 178 LPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLI----HGLSRA-GLW 232

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           K + +F  +       P+  T+ IL+    +   V +   + + +H     PDI TYN +
Sbjct: 233 KEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTL 292

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           M+     G +++   +   +     K ++ ++N+LI+ Y K Q  D+  ++F+ +     
Sbjct: 293 MNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGL 352

Query: 188 KPTLPTFNSMI---INYGKAR------------------------LQG--------KAEY 212
           KP+  T+N++I      G+ R                        L G        +A  
Sbjct: 353 KPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAID 412

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +FQ +   ++ P+   +  ++        +  A + FDE+SK G +      N ++   C
Sbjct: 413 LFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLC 472

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             G+ +EA  L       G  PDS T+ ++ +   K N      +LL+ M      P++
Sbjct: 473 NKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDE 531



 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  L+  + K G    A+ LF  ++ +  +P+  V++ L+        +A  L +A   F
Sbjct: 394 YCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMC----RAGKLEEAWKQF 449

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            ++   G+E   P+ + YNIL+        + +   L  ++ E    PD  T+N ++   
Sbjct: 450 DEISKNGLE---PDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNL 506

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
            K   I E   +L  M++    PD    ++L+
Sbjct: 507 LKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 538



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 68/182 (37%), Gaps = 1/182 (0%)

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           +PD +T   L+             Q+F  +          T+  +I    KAR  G A  
Sbjct: 74  EPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIK 133

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           + +KM        F TY  II         + A ++F E+   G    V   +++++  C
Sbjct: 134 LHEKMKGNCKGDVF-TYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLC 192

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             G   EA   F+     G++ D  TY  L    ++A + + V   L  M   G  P+  
Sbjct: 193 RFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAF 252

Query: 333 FF 334
            F
Sbjct: 253 TF 254


>gi|357502623|ref|XP_003621600.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496615|gb|AES77818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 890

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 144/312 (46%), Gaps = 6/312 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M KQ   +    + S +I  +G+ G+  LA+ LF   R  G       ++A+I+A     
Sbjct: 203 MSKQNGRVDKGKLVSAMIGTLGRLGEINLALGLFERARLEGYGSTVHSFSAMISAF---- 258

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAP 119
            +      A+  F+ M       PN++TYN ++ A A+   + D V   + E+  + L P
Sbjct: 259 GRNGRFPDAVDLFRSMSSWG-VVPNVITYNSIIDAGAKGEVSFDVVVKFYDEMIANGLMP 317

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D  TYN ++      GM +  + +LS M      PD+ T+N  +D+  K    D   +VF
Sbjct: 318 DRLTYNSLLSVCASKGMWEMAQKLLSEMDHRCIVPDVFTYNTYLDTLCKAGQIDLARRVF 377

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           + +   +  P + T+++M+  Y KA L   A  ++++M         ++Y  ++ +Y   
Sbjct: 378 EEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCLDRVSYNTLVGIYEKL 437

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            N+  A E   E+ + G +  V T NA+L  Y  +G+  E   LFE      + P++ TY
Sbjct: 438 GNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHGMYDEVRRLFEEMKARNIYPNTLTY 497

Query: 300 KLLYKAYTKANM 311
             +   YTK  M
Sbjct: 498 STMIDMYTKGEM 509



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 139/305 (45%), Gaps = 13/305 (4%)

Query: 6   WYIADTGIYSKLIAVMGKKGQTR--LAMWLFSEMRNSGCRPDPSVYNALIT--AHLHTRD 61
           W +    I    I   G KG+    + +  + EM  +G  PD   YN+L++  A     +
Sbjct: 277 WGVVPNVITYNSIIDAGAKGEVSFDVVVKFYDEMIANGLMPDRLTYNSLLSVCASKGMWE 336

Query: 62  KAKALAKALGYFQKMKGMERC-KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            A+ L   + +        RC  P++ TYN  L    +A  +D    +F+E+    + P+
Sbjct: 337 MAQKLLSEMDH--------RCIVPDVFTYNTYLDTLCKAGQIDLARRVFEEMSSKRVWPN 388

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TY+ +MD Y K  ++++  ++   MK      D +++N L+  Y K    D+  +  K
Sbjct: 389 VVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCLDRVSYNTLVGIYEKLGNLDEAIEKCK 448

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +  S     + T+N+++  YGK  +  +   +F++M A    P+ +TY  +I MY   +
Sbjct: 449 EMERSGINRDVVTYNALLSGYGKHGMYDEVRRLFEEMKARNIYPNTLTYSTMIDMYTKGE 508

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
               A +++ E      ++ V   +A+++  C NGL   + +L       G+ P+  T+ 
Sbjct: 509 MFQEAMDVYREFKMARLEIDVVFYSAIIDTLCKNGLMESSIMLLMAMMEKGIKPNVVTFN 568

Query: 301 LLYKA 305
            +  A
Sbjct: 569 SIIDA 573



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 130/281 (46%), Gaps = 4/281 (1%)

Query: 52  LITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFK 110
           L++A + T  +   +  ALG F++ + +E     + +++ ++ A  +  R  D V+ LF+
Sbjct: 215 LVSAMIGTLGRLGEINLALGLFERAR-LEGYGSTVHSFSAMISAFGRNGRFPDAVD-LFR 272

Query: 111 ELHESILAPDIYTYNGVMDAYGKNGM-IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR 169
            +    + P++ TYN ++DA  K  +    +      M +N   PD +T+N L+     +
Sbjct: 273 SMSSWGVVPNVITYNSIIDAGAKGEVSFDVVVKFYDEMIANGLMPDRLTYNSLLSVCASK 332

Query: 170 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
             ++  +++   + H    P + T+N+ +    KA     A  VF++M++ +  P+ +TY
Sbjct: 333 GMWEMAQKLLSEMDHRCIVPDVFTYNTYLDTLCKAGQIDLARRVFEEMSSKRVWPNVVTY 392

Query: 230 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289
             ++  Y   + +  A  +++E+      +   + N ++  Y   G   EA    +    
Sbjct: 393 SAMMDGYAKANLLEDALNLYEEMKLRSVCLDRVSYNTLVGIYEKLGNLDEAIEKCKEMER 452

Query: 290 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            G+  D  TY  L   Y K  M + V++L + M+   I PN
Sbjct: 453 SGINRDVVTYNALLSGYGKHGMYDEVRRLFEEMKARNIYPN 493



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 134/331 (40%), Gaps = 37/331 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K R    D   Y+ L+ +  K G    A+    EM  SG   D   YNAL++ +     K
Sbjct: 416 KLRSVCLDRVSYNTLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLSGY----GK 471

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
                +    F++MK      PN +TY+ ++    +     +   +++E   + L  D+ 
Sbjct: 472 HGMYDEVRRLFEEMKA-RNIYPNTLTYSTMIDMYTKGEMFQEAMDVYREFKMARLEIDVV 530

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS--------YGKRQAFDK 174
            Y+ ++D   KNG+++    +L  M     KP+++TFN +ID+        YG   + D 
Sbjct: 531 FYSAIIDTLCKNGLMESSIMLLMAMMEKGIKPNVVTFNSIIDASQQSPTLEYGVNGSSDA 590

Query: 175 MEQ--------VFKSLMHSK--EKPTLPTFNSMII---NYGKARLQGKAE-----YVFQK 216
           ++         V      +K  E   L  F  +      + K    G+ +     ++FQK
Sbjct: 591 IDYPIEQSSPIVIDGAFQNKPGEDRILKMFEQLAAEKAGHLKKNRSGRQDKHCILWLFQK 650

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M  +   P+ +T+  I+     C++   A  + D L +L  +      N +L  Y    +
Sbjct: 651 MHELNIKPNVVTFSAILNACSLCNSYEDASLLLDTL-RLFDNQVYGVTNGLLMGY-REQV 708

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
              A+ LF+    M    D ST    Y A T
Sbjct: 709 WLSAETLFDELMCM----DPSTSSAFYNALT 735


>gi|326508346|dbj|BAJ99440.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 819

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 154/359 (42%), Gaps = 32/359 (8%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH-- 58
           M+ Q  Y A   IY  +I +  +  Q   A  LF EM+   C+PD  +YN+LI AH    
Sbjct: 143 MKNQENYCARNDIYGMMIQLHARHNQVDQARGLFFEMQEWRCKPDADIYNSLINAHARAG 202

Query: 59  -------------------TRDKAKALAKALGYFQKM-KGMERCK--------PNIVTYN 90
                              +R     +  A G      K +E CK        P++VT+N
Sbjct: 203 LWRWAINIMDDMLRAAIPPSRATYNNVVNACGAAGNWKKALELCKKMIRNGVGPDLVTHN 262

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
           I+L A        +    F+ +  + +APD +T N V+    K G   +   +L+ M+  
Sbjct: 263 IVLSAFKNGFQYTKATGYFEMMKGANIAPDTFTLNIVIHCLVKVGQHGDAVDLLNSMREK 322

Query: 151 --QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
             QC PD++T+  +I SY      +  + VF  ++    KP + ++N+++  Y    +  
Sbjct: 323 RVQCSPDVVTYTSIIHSYYVCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHT 382

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           +A  +F+ +      P  ++Y  ++  YG      +ARE+F+E+ K        + NA++
Sbjct: 383 EAFGIFKLLKQNGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALI 442

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +AY   G+  EA  L       G+ PD  +   L  A  +      +  +L+  +  GI
Sbjct: 443 DAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGI 501



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 152/333 (45%), Gaps = 12/333 (3%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNS---GCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           LI  M   G    A+++F  M+N      R D  +Y  +I   LH R     + +A G F
Sbjct: 123 LIREMAFSGSLEHAVYVFCWMKNQENYCARND--IYGMMI--QLHARHNQ--VDQARGLF 176

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+   RCKP+   YN L+ A A+A        +  ++  + + P   TYN V++A G 
Sbjct: 177 FEMQEW-RCKPDADIYNSLINAHARAGLWRWAINIMDDMLRAAIPPSRATYNNVVNACGA 235

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G  K+   +  +M  N   PD++T N+++ ++     + K    F+ +  +   P   T
Sbjct: 236 AGNWKKALELCKKMIRNGVGPDLVTHNIVLSAFKNGFQYTKATGYFEMMKGANIAPDTFT 295

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTA--MKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            N +I    K    G A  +   M    ++ +P  +TY  II  Y  C  V   + +FD 
Sbjct: 296 LNIVIHCLVKVGQHGDAVDLLNSMREKRVQCSPDVVTYTSIIHSYYVCGQVENCKAVFDM 355

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G    + + NA+L AY  +G+ TEA  +F+     G+ PD  +Y  L  AY ++  
Sbjct: 356 MVAEGVKPNIVSYNALLGAYASHGMHTEAFGIFKLLKQNGLRPDVVSYTTLLNAYGRSAQ 415

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            E  +++   M +N   PNK  +   ++ + S+
Sbjct: 416 PEKAREVFNEMRKNSCKPNKVSYNALIDAYGSA 448



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 158/346 (45%), Gaps = 16/346 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH----LHTRDKAKA 65
           D   Y+ +I      GQ      +F  M   G +P+   YNAL+ A+    +HT      
Sbjct: 329 DVVTYTSIIHSYYVCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHT------ 382

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
             +A G F+ +K     +P++V+Y  LL A  ++   ++   +F E+ ++   P+  +YN
Sbjct: 383 --EAFGIFKLLK-QNGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYN 439

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++DAYG  GM KE  S+L  M+ +   PD+++ + L+ + G+ +   K++ V ++    
Sbjct: 440 ALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFR 499

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
             +  +  +NS I +Y       KA  ++  M A    P  +TY  +I+        + +
Sbjct: 500 GIELNIVAYNSGIGSYLSFGDYEKALKLYATMMASNVNPDAVTYNILISGLCKLGKYAES 559

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            + F+++  L   +     ++++ +Y       EA+  F N    G  PD  TY  + +A
Sbjct: 560 LKFFEDMVDLRIPLTKEVYSSLICSYVKQDKLAEAESTFINMKASGCFPDVLTYTAMIQA 619

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSG 351
           YT       V  L K ME N I+P+       +E  +    G+Q G
Sbjct: 620 YTDHGSWTSVWDLFKEMEGNAILPDAIICSSLMEALNK---GNQYG 662



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 139/331 (41%), Gaps = 40/331 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ ++   G  G  + A+ L  +M  +G  PD   +N +++A            KA GYF
Sbjct: 226 YNNVVNACGAAGNWKKALELCKKMIRNGVGPDLVTHNIVLSAF----KNGFQYTKATGYF 281

Query: 74  QKMKGME------------------------------------RCKPNIVTYNILLRACA 97
           + MKG                                      +C P++VTY  ++ +  
Sbjct: 282 EMMKGANIAPDTFTLNIVIHCLVKVGQHGDAVDLLNSMREKRVQCSPDVVTYTSIIHSYY 341

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
               V+   A+F  +    + P+I +YN ++ AY  +GM  E   +   +K N  +PD++
Sbjct: 342 VCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTEAFGIFKLLKQNGLRPDVV 401

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           ++  L+++YG+    +K  +VF  +  +  KP   ++N++I  YG A +  +A  +  +M
Sbjct: 402 SYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGMFKEAISLLHEM 461

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
                 P  ++   ++   G C   ++   + +     G ++ +   N+ + +Y   G  
Sbjct: 462 EKDGIPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYNSGIGSYLSFGDY 521

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            +A  L+       V PD+ TY +L     K
Sbjct: 522 EKALKLYATMMASNVNPDAVTYNILISGLCK 552



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 147/329 (44%), Gaps = 5/329 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+      G    A  +F  ++ +G RPD   Y  L+ A+     ++    KA   F
Sbjct: 368 YNALLGAYASHGMHTEAFGIFKLLKQNGLRPDVVSYTTLLNAY----GRSAQPEKAREVF 423

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+    CKPN V+YN L+ A   A    +  +L  E+ +  + PD+ + + ++ A G+
Sbjct: 424 NEMRK-NSCKPNKVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLAACGR 482

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
                ++++VL   K    + +I+ +N  I SY     ++K  +++ ++M S   P   T
Sbjct: 483 CRQTTKIDTVLEAAKFRGIELNIVAYNSGIGSYLSFGDYEKALKLYATMMASNVNPDAVT 542

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N +I    K     ++   F+ M  ++   +   Y  +I  Y   D ++ A   F  + 
Sbjct: 543 YNILISGLCKLGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQDKLAEAESTFINMK 602

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V T  AM++AY  +G  T    LF+      + PD+     L +A  K N   
Sbjct: 603 ASGCFPDVLTYTAMIQAYTDHGSWTSVWDLFKEMEGNAILPDAIICSSLMEALNKGNQYG 662

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            V +L+K M    I  N++ + E + + S
Sbjct: 663 RVLQLMKFMHDQCIQLNQKAYFEIIASCS 691



 Score = 45.1 bits (105), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+ + K G+   ++  F +M +        VY++LI +++    K   LA+A
Sbjct: 539 DAVTYNILISGLCKLGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYV----KQDKLAEA 594

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F  MK    C P+++TY  +++A     +   V  LFKE+  + + PD    + +M+
Sbjct: 595 ESTFINMKA-SGCFPDVLTYTAMIQAYTDHGSWTSVWDLFKEMEGNAILPDAIICSSLME 653

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A  K      +  ++  M     + +   +  +I S    + +    ++ + L  S    
Sbjct: 654 ALNKGNQYGRVLQLMKFMHDQCIQLNQKAYFEIIASCSMLRDWKTASEIIEHLDSSLPSI 713

Query: 190 TLPTFNSMIINYGKARLQGKAEY---VFQKMTAMKYTPSFITYECII 233
           ++   N ++   GK    GK E    +F KM +   T    TY+ ++
Sbjct: 714 SVGKLNYLLNFLGKC---GKTESMMKLFYKMVSSCSTVGLSTYKVLL 757


>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
           [Oryza sativa Japonica Group]
 gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 793

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 144/316 (45%), Gaps = 5/316 (1%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S +IA  G+ G    A+  F +++  G  P    YNAL    L    KA    +AL   +
Sbjct: 255 STVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNAL----LQVFGKAGNYTEALRVLK 310

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M+    C+P+ VTYN L    A+A   ++       +    L P+ +TYN VM AY   
Sbjct: 311 EMED-SGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANV 369

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G + E  ++  RMK N   P++ T+NL+    GK+  F  M ++ + +  S   P   T+
Sbjct: 370 GRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTW 429

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N+M+   GK  ++     V   M +     S  TY  +I+ YG C + + A +++DE+  
Sbjct: 430 NTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMIS 489

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
            G    ++T NA+L      G  + A  +       G  P+  +Y LL + Y K      
Sbjct: 490 SGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAG 549

Query: 315 VQKLLKRMEQNGIVPN 330
           ++ + K +    I P+
Sbjct: 550 IESIEKEVYVGTIFPS 565



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 141/322 (43%), Gaps = 8/322 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++  + + G+   A+ LF+E+R  G  P    YN ++  +       ++  + 
Sbjct: 179 DVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRM---GRSWPRI 235

Query: 70  LGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +   ++M+  G+E   P+  T + ++ AC +   +DQ  A F++L      P + TYN +
Sbjct: 236 VALLEEMRAAGVE---PDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNAL 292

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  +GK G   E   VL  M+ + C+PD +T+N L  +Y +   F++  +   ++     
Sbjct: 293 LQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGL 352

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P   T+N+++  Y       +A  +F +M    Y P+  TY  I  M G     +   E
Sbjct: 353 LPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLE 412

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + +E+S+ G      T N ML      G+      +     + GV     TY  L  AY 
Sbjct: 413 MLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYG 472

Query: 308 KANMKELVQKLLKRMEQNGIVP 329
           +   +    K+   M  +G  P
Sbjct: 473 RCGSRTYAFKMYDEMISSGFTP 494



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 154/330 (46%), Gaps = 11/330 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  Y+ +   Y+ +  ++GKK +    + +  EM  SGC P+   +N ++ A    R  
Sbjct: 383 KKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTML-AVCGKRGM 441

Query: 63  AKALAKALGYFQKMKGMERCKPNIV--TYNILLRACAQARNVDQVNALFKELHESILAPD 120
              + + L       GM+ C   +   TYN L+ A  +  +      ++ E+  S   P 
Sbjct: 442 EDYVTRVL------NGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPC 495

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TYN +++   + G     +S++S+M  N  KP+  +++LL+  Y K      +E + K
Sbjct: 496 LTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEK 555

Query: 181 SLMHSKEKPTLPTFNSMII-NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
            +      P+     +++I N+   RL+G  E  FQ++ A  Y P  + +  ++ MY   
Sbjct: 556 EVYVGTIFPSWVILRTLVIANFKCRRLEG-VEKAFQEVKAQGYKPDLVIFNSMLAMYAKN 614

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
              S+A E+FD + + G    + T N++++ Y  +    EA+ + +   +  V PD  +Y
Sbjct: 615 GLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSY 674

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             +   + K  + +  Q++L  M  +G+ P
Sbjct: 675 NTVINGFCKQGLIKEAQRILSEMIADGMAP 704



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 151/341 (44%), Gaps = 23/341 (6%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K R ++     Y+ L+ V GK G    A+ +  EM +SGC+PD   YN L          
Sbjct: 278 KARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNEL---------- 327

Query: 63  AKALAKALGYFQKM---------KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH 113
           A   A+A G+F++          KG+    PN  TYN ++ A A    VD+  ALF  + 
Sbjct: 328 AGTYARA-GFFEEAAKCLDTMTSKGL---LPNTFTYNTVMTAYANVGRVDEALALFDRMK 383

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
           ++   P++ TYN +    GK      M  +L  M  + C P+ +T+N ++   GKR   D
Sbjct: 384 KNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMED 443

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
            + +V   +     + +  T+N++I  YG+   +  A  ++ +M +  +TP   TY  ++
Sbjct: 444 YVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALL 503

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
            +     + S A+ I  ++ K G      + + +L+ Y   G     + + +  +   + 
Sbjct: 504 NVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIF 563

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           P     + L  A  K    E V+K  + ++  G  P+   F
Sbjct: 564 PSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIF 604



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 142/325 (43%), Gaps = 42/325 (12%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMR-NSGCRPDPSVYNALITAHLHTRDKAKALA 67
           AD      ++  +G++GQ  +   L  EM    G R D   Y    T  LH   +A    
Sbjct: 142 ADAAALEMVVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAY----TTVLHALSRAGRYE 197

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHESILAPDIYTYNG 126
           +AL  F +++  +   P IVTYN++L    +  R+  ++ AL +E+  + + PD +T + 
Sbjct: 198 RALQLFAELR-RQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTAST 256

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           V+ A G++G++ +  +    +K+    P ++T+N L+  +GK   + +  +V K +  S 
Sbjct: 257 VIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSG 316

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P   T+N +   Y +A    +A      MT+    P+  TY  ++T Y    NV R  
Sbjct: 317 CQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYA---NVGRV- 372

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
                                           EA  LF+     G  P+ +TY L++   
Sbjct: 373 -------------------------------DEALALFDRMKKNGYVPNVNTYNLIFGML 401

Query: 307 TKANMKELVQKLLKRMEQNGIVPNK 331
            K +    + ++L+ M ++G  PN+
Sbjct: 402 GKKSRFTAMLEMLEEMSRSGCTPNR 426



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 132/287 (45%), Gaps = 31/287 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA---------- 63
           Y+ L+ V+ ++G    A  + S+M  +G +P+   Y+ L+  +    + A          
Sbjct: 499 YNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVY 558

Query: 64  -----------KALAKALGYFQKMKGMERC---------KPNIVTYNILLRACAQARNVD 103
                      + L  A    ++++G+E+          KP++V +N +L   A+     
Sbjct: 559 VGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYS 618

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +   +F  + +S L+PD+ TYN +MD Y K+    E E +L ++KS+Q KPD++++N +I
Sbjct: 619 KATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVI 678

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           + + K+    + +++   ++     P + T+++++  Y    +  +A  V   M      
Sbjct: 679 NGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLK 738

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
           P  +TY  ++  Y        ARE   E+S   ++     L  MLEA
Sbjct: 739 PMELTYRRVVDSYCKAKRYDEAREFLSEISDTDQNFD-QKLQHMLEA 784



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 147/311 (47%), Gaps = 9/311 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI+  G+ G    A  ++ EM +SG  P  + YNAL+  ++ +R    + A+++   
Sbjct: 464 YNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALL--NVLSRQGDWSTAQSIVSK 521

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
               G    KPN  +Y++LL+  A+  N   + ++ KE++   + P       ++ A  K
Sbjct: 522 MLKNGF---KPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFK 578

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              ++ +E     +K+   KPD++ FN ++  Y K   + K  ++F S+  S   P L T
Sbjct: 579 CRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLIT 638

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDE 251
           +NS++  Y K+    +AE + +++ + +  P  ++Y  +I   G+C    +  A+ I  E
Sbjct: 639 YNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVIN--GFCKQGLIKEAQRILSE 696

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G    V T + ++  Y    +  EA  +     +  + P   TY+ +  +Y KA  
Sbjct: 697 MIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKR 756

Query: 312 KELVQKLLKRM 322
            +  ++ L  +
Sbjct: 757 YDEAREFLSEI 767


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 166/360 (46%), Gaps = 48/360 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  + K G TR A+ L  ++     +P+  +Y+ +I A      K + +++A G F
Sbjct: 415 YATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALC----KYQLVSEAYGLF 470

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  KG+     ++VTY+ L+        + +   L  E+    + PD+ TY  ++DA 
Sbjct: 471 SEMTVKGIS---ADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDAL 527

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           GK G +KE +SVL+ M     KPD+ T+N L++ Y       K + VF ++      P +
Sbjct: 528 GKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDV 587

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIF 249
            T+  +I  + K+++  +A  +F++M      P  +TY  ++   G C +  +S   ++ 
Sbjct: 588 HTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVD--GLCKSGRISYVWDLI 645

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE+   G+   V T N++++  C NG   +A  LF    + G+ P++ T+ +L     K 
Sbjct: 646 DEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKG 705

Query: 310 ----NMKELVQKL-------------------------------LKRMEQNGIVPNKRFF 334
               + +E+ Q L                               L +ME+NG +PN   F
Sbjct: 706 GRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTF 765



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 138/322 (42%), Gaps = 9/322 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD   YS LI      G+ + A+ L +EM      PD   Y  L+ A L    K K    
Sbjct: 480 ADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDA-LGKEGKVKEAKS 538

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
            L    K       KP++ TYN L+        V +   +F  +    + PD++TY  ++
Sbjct: 539 VLAVMLK----ACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILI 594

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + + K+ M+ E  ++   M      PD +T++ L+D   K      +  +   +    + 
Sbjct: 595 NGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQP 654

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAR 246
             + T+NS+I    K     KA  +F KM      P+  T+   I + G C    +  A+
Sbjct: 655 ADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFT--ILLDGLCKGGRLKDAQ 712

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+F +L   G  + V   N M+  +C  GL  EA  +       G  P++ T+ ++  A 
Sbjct: 713 EVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINAL 772

Query: 307 TKANMKELVQKLLKRMEQNGIV 328
            K +  +  +KLL++M   G++
Sbjct: 773 FKKDENDKAEKLLRQMIARGLL 794



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 147/331 (44%), Gaps = 14/331 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R Y  DT   + LI  +  KGQ + A+    ++   G + +   Y  LI       D  
Sbjct: 56  KRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTR 115

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            A+     + +K+ G    KPN+  YN ++ A  + + V +   LF E+    ++ ++ T
Sbjct: 116 AAIK----FLRKIDG-RLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVT 170

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ ++  +   G +KE   +L+ M      P++ T+N+L+D+  K     + + V   ++
Sbjct: 171 YSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVML 230

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
            +  K  + T+++++  Y       KA++VF  M+ M  TP   +Y  +I  +     V 
Sbjct: 231 KACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVD 290

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYC-MNGLPTEADLLFENSHNM---GVTPDSSTY 299
           +A  +F E+  L +   +   N +L+++  M    T   L    SH +   G+ PD  T 
Sbjct: 291 KALNLFKEMI-LSRFPPIIQFNKILDSFAKMKHYSTAVSL----SHRLELKGIQPDLFTL 345

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +L   +           +L ++ + G  P+
Sbjct: 346 NILINCFCHMGQITFGFSVLAKILKRGYPPS 376



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 139/322 (43%), Gaps = 6/322 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ +I  + K      A  LFSEM   G   +   Y+ LI            L +ALG 
Sbjct: 135 MYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFC----IVGKLKEALGL 190

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
              M  ++   PN+ TYNIL+ A  +   V +  ++   + ++ +  ++ TY+ +MD Y 
Sbjct: 191 LNVMV-LKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYF 249

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
               +K+ + V + M      PD+ ++N++I+ + K +  DK   +FK ++ S+  P + 
Sbjct: 250 LVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPII- 308

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            FN ++ ++ K +    A  +  ++      P   T   +I  + +   ++    +  ++
Sbjct: 309 QFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKI 368

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            K G      TLN +++  C+ G   +A    +     G   +  +Y  L     K    
Sbjct: 369 LKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDT 428

Query: 313 ELVQKLLKRMEQNGIVPNKRFF 334
               KLL++++     PN   +
Sbjct: 429 RGAIKLLRKIDGRLTKPNVEMY 450



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 40/181 (22%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R   AD   Y+ LI  + K G    A+ LF++M++ G R                   
Sbjct: 649 RDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIR------------------- 689

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
                                PN  T+ ILL    +   +     +F++L       D+Y
Sbjct: 690 ---------------------PNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVY 728

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            YN ++  + K G+++E  ++LS+M+ N C P+ +TF+++I++  K+   DK E++ + +
Sbjct: 729 IYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQM 788

Query: 183 M 183
           +
Sbjct: 789 I 789



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 139/356 (39%), Gaps = 45/356 (12%)

Query: 26  QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85
           + + A  +F+ M   G  PD   YN +I        K K + KAL  F++M  + R  P 
Sbjct: 253 EVKKAQHVFNAMSLMGVTPDVHSYNIMINGFC----KIKRVDKALNLFKEMI-LSRFPP- 306

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           I+ +N +L + A+ ++     +L   L    + PD++T N +++ +   G I    SVL+
Sbjct: 307 IIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLA 366

Query: 146 RMKSNQCKPDIITFNLLIDSYGKR---------------QAFDKMEQVFKSLMHSK---- 186
           ++      P  +T N LI     +               Q F   +  + +L++      
Sbjct: 367 KILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIG 426

Query: 187 ----------------EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
                            KP +  ++++I    K +L  +A  +F +MT    +   +TY 
Sbjct: 427 DTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYS 486

Query: 231 CIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
            +I  YG+C    +  A  + +E+     +  V T   +++A    G   EA  +     
Sbjct: 487 TLI--YGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVML 544

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
              V PD  TY  L   Y      +  Q +   M   G+ P+   +   +  F  S
Sbjct: 545 KACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKS 600


>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
          Length = 793

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 144/316 (45%), Gaps = 5/316 (1%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S +IA  G+ G    A+  F +++  G  P    YNAL    L    KA    +AL   +
Sbjct: 255 STVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNAL----LQVFGKAGNYTEALRVLK 310

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M+    C+P+ VTYN L    A+A   ++       +    L P+ +TYN VM AY   
Sbjct: 311 EMED-SGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANV 369

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G + E  ++  RMK N   P++ T+NL+    GK+  F  M ++ + +  S   P   T+
Sbjct: 370 GRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTW 429

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N+M+   GK  ++     V   M +     S  TY  +I+ YG C + + A +++DE+  
Sbjct: 430 NTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMIS 489

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
            G    ++T NA+L      G  + A  +       G  P+  +Y LL + Y K      
Sbjct: 490 SGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAG 549

Query: 315 VQKLLKRMEQNGIVPN 330
           ++ + K +    I P+
Sbjct: 550 IESIEKEVYVGTIFPS 565



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 141/322 (43%), Gaps = 8/322 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++  + + G+   A+ LF+E+R  G  P    YN ++  +       ++  + 
Sbjct: 179 DVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRM---GRSWPRI 235

Query: 70  LGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +   ++M+  G+E   P+  T + ++ AC +   +DQ  A F++L      P + TYN +
Sbjct: 236 VALLEEMRAAGVE---PDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNAL 292

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  +GK G   E   VL  M+ + C+PD +T+N L  +Y +   F++  +   ++     
Sbjct: 293 LQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGL 352

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P   T+N+++  Y       +A  +F +M    Y P+  TY  I  M G     +   E
Sbjct: 353 LPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLE 412

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + +E+S+ G      T N ML      G+      +     + GV     TY  L  AY 
Sbjct: 413 MLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYG 472

Query: 308 KANMKELVQKLLKRMEQNGIVP 329
           +   +    K+   M  +G  P
Sbjct: 473 RCGSRTYAFKMYDEMISSGFTP 494



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 154/330 (46%), Gaps = 11/330 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  Y+ +   Y+ +  ++GKK +    + +  EM  SGC P+   +N ++ A    R  
Sbjct: 383 KKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTML-AVCGKRGM 441

Query: 63  AKALAKALGYFQKMKGMERCKPNIV--TYNILLRACAQARNVDQVNALFKELHESILAPD 120
              + + L       GM+ C   +   TYN L+ A  +  +      ++ E+  S   P 
Sbjct: 442 EDYVTRVL------NGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPC 495

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TYN +++   + G     +S++S+M  N  KP+  +++LL+  Y K      +E + K
Sbjct: 496 LTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEK 555

Query: 181 SLMHSKEKPTLPTFNSMII-NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
            +      P+     +++I N+   RL+G  E  FQ++ A  Y P  + +  ++ MY   
Sbjct: 556 EVYVGTIFPSWVILRTLVIANFKCRRLEG-VEKAFQEVKAQGYKPDLVIFNSMLAMYAKN 614

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
              S+A E+FD + + G    + T N++++ Y  +    EA+ + +   +  V PD  +Y
Sbjct: 615 GLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSY 674

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             +   + K  + +  Q++L  M  +G+ P
Sbjct: 675 NTVINGFCKQGLIKEAQRILSEMIADGMAP 704



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 151/341 (44%), Gaps = 23/341 (6%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K R ++     Y+ L+ V GK G    A+ +  EM +SGC+PD   YN L          
Sbjct: 278 KARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNEL---------- 327

Query: 63  AKALAKALGYFQKM---------KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH 113
           A   A+A G+F++          KG+    PN  TYN ++ A A    VD+  ALF  + 
Sbjct: 328 AGTYARA-GFFEEAAKCLDTMTSKGL---LPNTFTYNTVMTAYANVGRVDEALALFDRMK 383

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
           ++   P++ TYN +    GK      M  +L  M  + C P+ +T+N ++   GKR   D
Sbjct: 384 KNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMED 443

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
            + +V   +     + +  T+N++I  YG+   +  A  ++ +M +  +TP   TY  ++
Sbjct: 444 YVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALL 503

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
            +     + S A+ I  ++ K G      + + +L+ Y   G     + + +  +   + 
Sbjct: 504 NVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIF 563

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           P     + L  A  K    E V+K  + ++  G  P+   F
Sbjct: 564 PSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIF 604



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 142/325 (43%), Gaps = 42/325 (12%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMR-NSGCRPDPSVYNALITAHLHTRDKAKALA 67
           AD      ++  +G++GQ  +   L  EM    G R D   Y    T  LH   +A    
Sbjct: 142 ADAAALEMVVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAY----TTVLHALSRAGRYE 197

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHESILAPDIYTYNG 126
           +AL  F +++  +   P IVTYN++L    +  R+  ++ AL +E+  + + PD +T + 
Sbjct: 198 RALQLFAELR-RQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTAST 256

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           V+ A G++G++ +  +    +K+    P ++T+N L+  +GK   + +  +V K +  S 
Sbjct: 257 VIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSG 316

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P   T+N +   Y +A    +A      MT+    P+  TY  ++T Y    NV R  
Sbjct: 317 CQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYA---NVGRV- 372

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
                                           EA  LF+     G  P+ +TY L++   
Sbjct: 373 -------------------------------DEALALFDRMKKNGYVPNVNTYNLIFGML 401

Query: 307 TKANMKELVQKLLKRMEQNGIVPNK 331
            K +    + ++L+ M ++G  PN+
Sbjct: 402 GKKSRFTAMLEMLEEMSRSGCTPNR 426



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 132/287 (45%), Gaps = 31/287 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA---------- 63
           Y+ L+ V+ ++G    A  + S+M  +G +P+   Y+ L+  +    + A          
Sbjct: 499 YNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVY 558

Query: 64  -----------KALAKALGYFQKMKGMERC---------KPNIVTYNILLRACAQARNVD 103
                      + L  A    ++++G+E+          KP++V +N +L   A+     
Sbjct: 559 VGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYS 618

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +   +F  + +S L+PD+ TYN +MD Y K+    E E +L ++KS+Q KPD++++N +I
Sbjct: 619 KATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVI 678

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           + + K+    + +++   ++     P + T+++++  Y    +  +A  V   M      
Sbjct: 679 NGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLK 738

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
           P  +TY  ++  Y        ARE   E+S   ++     L  MLEA
Sbjct: 739 PMELTYRRVVDSYCKAKRYDEAREFLSEISDTDQNFD-QKLQHMLEA 784



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 147/311 (47%), Gaps = 9/311 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI+  G+ G    A  ++ EM +SG  P  + YNAL+  ++ +R    + A+++   
Sbjct: 464 YNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALL--NVLSRQGDWSTAQSIVSK 521

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
               G    KPN  +Y++LL+  A+  N   + ++ KE++   + P       ++ A  K
Sbjct: 522 MLKNGF---KPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFK 578

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              ++ +E     +K+   KPD++ FN ++  Y K   + K  ++F S+  S   P L T
Sbjct: 579 CRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLIT 638

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDE 251
           +NS++  Y K+    +AE + +++ + +  P  ++Y  +I   G+C    +  A+ I  E
Sbjct: 639 YNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVIN--GFCKQGLIKEAQRILSE 696

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G    V T + ++  Y    +  EA  +     +  + P   TY+ +  +Y KA  
Sbjct: 697 MIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKR 756

Query: 312 KELVQKLLKRM 322
            +  ++ L  +
Sbjct: 757 YDEAREFLSEI 767


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 151/343 (44%), Gaps = 21/343 (6%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++ ++ DT  YSK+I  +    +   A  LF EM+  G  PD   Y  LI +      KA
Sbjct: 281 RKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFC----KA 336

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             + +A   F++M+ +  C P +VTY  L+ A  +A+ V Q N +F  + ++   P+  T
Sbjct: 337 GLIEQAQWLFEEMRSV-GCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVT 395

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQ----------CK------PDIITFNLLIDSYG 167
           Y  ++D   K G I +   V +++              C+      P+++T+  L+D   
Sbjct: 396 YGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLC 455

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
           K    D   ++  +++ S  +P    ++++I  + KA     A+ VF +MT   Y PS  
Sbjct: 456 KAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVH 515

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           TY  +I        +  A ++  ++ K      V T  AM++  C  G   +A  L    
Sbjct: 516 TYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLM 575

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              G +P+  TY  L     KA   +L   L  +M + G  PN
Sbjct: 576 EEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPN 618



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 154/358 (43%), Gaps = 27/358 (7%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI    K G    A WLF EMR+ GC P    Y ALI A+L    KAK + +A
Sbjct: 322 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYL----KAKQVPQA 377

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL----------------H 113
              F +M     C+PN VTY  L+    +A N+ +   ++ +L                 
Sbjct: 378 NDIFHRMVD-AGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCED 436

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
              LAP++ TY  ++D   K   +     +L  M S+ C+P+ I ++ LID + K    D
Sbjct: 437 RHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKID 496

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
             ++VF  +      P++ T+ S+I    K      A  V  +M     TP+ +TY  +I
Sbjct: 497 SAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMI 556

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL---LFENSHNM 290
                     +A ++   + + G    V T  A+++     G   + DL   LF      
Sbjct: 557 DGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGL---GKAGKIDLSLDLFTQMSRK 613

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 348
           G +P+  TY++L      A + +  + LL  M+Q       + +  A++ FS S   S
Sbjct: 614 GCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIAS 671



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 121/276 (43%), Gaps = 18/276 (6%)

Query: 73  FQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           FQ +K M R    P+  TY+ ++     A  V++   LF+E+    + PD+YTY  ++D+
Sbjct: 273 FQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDS 332

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K G+I++ + +   M+S  C P ++T+  LI +Y K +   +   +F  ++ +  +P 
Sbjct: 333 FCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPN 392

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMK----------------YTPSFITYECIIT 234
             T+ +++    KA    KA  V+ K+                      P+ +TY  ++ 
Sbjct: 393 DVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVD 452

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
                  V  A E+ D +   G +      +A+++ +C  G    A  +F      G  P
Sbjct: 453 GLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLP 512

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              TY  L     K    +L  K+L +M ++   PN
Sbjct: 513 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 548



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 82/380 (21%), Positives = 152/380 (40%), Gaps = 69/380 (18%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I +   Y  L++   KK Q      + + M   GC P+PS++N+L+ ++ + +D A A  
Sbjct: 139 IPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYA-- 196

Query: 68  KALGYFQKMKGMER--CKPNIVTYNILLRA-CAQAR------------------------ 100
                ++ +  M    C P  V YNI + + C Q +                        
Sbjct: 197 -----YKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVL 251

Query: 101 ---NV-------------DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
              NV             D+   L KE+      PD  TY+ V+        +++   + 
Sbjct: 252 NKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLF 311

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             MK     PD+ T+ +LIDS+ K    ++ + +F+ +      PT+ T+ ++I  Y KA
Sbjct: 312 QEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKA 371

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
           +   +A  +F +M      P+ +TY  ++       N+S+A E++ +L        + T 
Sbjct: 372 KQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL--------IGTS 423

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           ++            ++D  F       + P+  TY  L     KA+  +   +LL  M  
Sbjct: 424 DS-----------ADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLS 472

Query: 325 NGIVPNKRFFLEALETFSSS 344
           +G  PN   +   ++ F  +
Sbjct: 473 SGCEPNHIVYDALIDGFCKA 492



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 125/321 (38%), Gaps = 73/321 (22%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG------- 135
           +P+ VTYN L++  + A  VD    + KE+ ES    D +T      A  K G       
Sbjct: 37  RPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALD 96

Query: 136 MIK-------------------------EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170
           MI+                         E  S L RM+ N C P+++T+  L+  + K++
Sbjct: 97  MIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKK 156

Query: 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
                +++   +M     P    FNS++ +Y   +    A  +  +MT     P ++ Y 
Sbjct: 157 QLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYN 216

Query: 231 CII-------------------TMYGY-----C----DNVSR-AREI-----FDELSKLG 256
             I                    +YG      C     NV+  AR +     FD+  +L 
Sbjct: 217 IFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLI 276

Query: 257 KDM-------KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           K+M         ST + ++   C      +A LLF+    +GVTPD  TY +L  ++ KA
Sbjct: 277 KEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKA 336

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
            + E  Q L + M   G  P 
Sbjct: 337 GLIEQAQWLFEEMRSVGCSPT 357



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 111/269 (41%), Gaps = 15/269 (5%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y+     Y+ LI  M K G+  LAM + S+M    C P+   Y A+I       +  KAL
Sbjct: 510 YLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKAL 569

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            K L   ++ KG   C PN+VTY  L+    +A  +D    LF ++     +P+  TY  
Sbjct: 570 -KLLSLMEE-KG---CSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRV 624

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++     G++ +   +L  MK       +  +   I  + K  +F     + + +    
Sbjct: 625 LINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSK--SFIASLGILEEMESYG 682

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI-----TYECIITMYGYCDN 241
             P  P +  +I  + KA   G+ E   +    M   PS +      Y  +I        
Sbjct: 683 TVPIAPVYGMLIDCFSKA---GRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQ 739

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEA 270
           V  A  ++ E+++ G   ++S    +++ 
Sbjct: 740 VEEAFRLYSEMTRRGFVPELSVFVCLIKG 768


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 151/343 (44%), Gaps = 21/343 (6%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++ ++ DT  YSK+I  +    +   A  LF EM+  G  PD   Y  LI +      KA
Sbjct: 281 RKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFC----KA 336

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             + +A   F++M+ +  C P +VTY  L+ A  +A+ V Q N +F  + ++   P+  T
Sbjct: 337 GLIEQAQWLFEEMRSVG-CSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVT 395

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQ----------CK------PDIITFNLLIDSYG 167
           Y  ++D   K G I +   V +++              C+      P+++T+  L+D   
Sbjct: 396 YGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLC 455

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
           K    D   ++  +++ S  +P    ++++I  + KA     A+ VF +MT   Y PS  
Sbjct: 456 KAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVH 515

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           TY  +I        +  A ++  ++ K      V T  AM++  C  G   +A  L    
Sbjct: 516 TYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLM 575

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              G +P+  TY  L     KA   +L   L  +M + G  PN
Sbjct: 576 EEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPN 618



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 154/358 (43%), Gaps = 27/358 (7%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI    K G    A WLF EMR+ GC P    Y ALI A+L    KAK + +A
Sbjct: 322 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYL----KAKQVPQA 377

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL----------------H 113
              F +M     C+PN VTY  L+    +A N+ +   ++ +L                 
Sbjct: 378 NDIFHRMVD-AGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCED 436

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
              LAP++ TY  ++D   K   +     +L  M S+ C+P+ I ++ LID + K    D
Sbjct: 437 RHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKID 496

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
             ++VF  +      P++ T+ S+I    K      A  V  +M     TP+ +TY  +I
Sbjct: 497 SAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMI 556

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL---LFENSHNM 290
                     +A ++   + + G    V T  A+++     G   + DL   LF      
Sbjct: 557 DGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGL---GKAGKIDLSLDLFTQMSRK 613

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 348
           G +P+  TY++L      A + +  + LL  M+Q       + +  A++ FS S   S
Sbjct: 614 GCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIAS 671



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 121/276 (43%), Gaps = 18/276 (6%)

Query: 73  FQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           FQ +K M R    P+  TY+ ++     A  V++   LF+E+    + PD+YTY  ++D+
Sbjct: 273 FQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDS 332

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K G+I++ + +   M+S  C P ++T+  LI +Y K +   +   +F  ++ +  +P 
Sbjct: 333 FCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPN 392

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMK----------------YTPSFITYECIIT 234
             T+ +++    KA    KA  V+ K+                      P+ +TY  ++ 
Sbjct: 393 DVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVD 452

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
                  V  A E+ D +   G +      +A+++ +C  G    A  +F      G  P
Sbjct: 453 GLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLP 512

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              TY  L     K    +L  K+L +M ++   PN
Sbjct: 513 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 548



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/380 (21%), Positives = 152/380 (40%), Gaps = 69/380 (18%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I +   Y  L++   KK Q      + + M   GC P+PS++N+L+ ++ + +D A A  
Sbjct: 139 IPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYA-- 196

Query: 68  KALGYFQKMKGMER--CKPNIVTYNILLRA-CAQAR------------------------ 100
                ++ +  M    C P  V YNI + + C Q +                        
Sbjct: 197 -----YKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVL 251

Query: 101 ---NV-------------DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
              NV             D+   L KE+      PD  TY+ V+        +++   + 
Sbjct: 252 NKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLF 311

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             MK     PD+ T+ +LIDS+ K    ++ + +F+ +      PT+ T+ ++I  Y KA
Sbjct: 312 QEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKA 371

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
           +   +A  +F +M      P+ +TY  ++       N+S+A E++ +L        + T 
Sbjct: 372 KQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL--------IGTS 423

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           ++            ++D  F       + P+  TY  L     KA+  +   +LL  M  
Sbjct: 424 DS-----------ADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLS 472

Query: 325 NGIVPNKRFFLEALETFSSS 344
           +G  PN   +   ++ F  +
Sbjct: 473 SGCEPNHIVYDALIDGFCKA 492



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 125/321 (38%), Gaps = 73/321 (22%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG------- 135
           +P+ VTYN L++  + A  VD    + KE+ ES    D +T      A  K G       
Sbjct: 37  RPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALD 96

Query: 136 MIK-------------------------EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170
           MI+                         E  S L RM+ N C P+++T+  L+  + K++
Sbjct: 97  MIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKK 156

Query: 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
                +++   +M     P    FNS++ +Y   +    A  +  +MT     P ++ Y 
Sbjct: 157 QLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYN 216

Query: 231 CII-------------------TMYGY-----C----DNVSR-AREI-----FDELSKLG 256
             I                    +YG      C     NV+  AR +     FD+  +L 
Sbjct: 217 IFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLI 276

Query: 257 KDM-------KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           K+M         ST + ++   C      +A LLF+    +GVTPD  TY +L  ++ KA
Sbjct: 277 KEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKA 336

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
            + E  Q L + M   G  P 
Sbjct: 337 GLIEQAQWLFEEMRSVGCSPT 357



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 111/269 (41%), Gaps = 15/269 (5%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y+     Y+ LI  M K G+  LAM + S+M    C P+   Y A+I       +  KAL
Sbjct: 510 YLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKAL 569

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            K L   ++ KG   C PN+VTY  L+    +A  +D    LF ++     +P+  TY  
Sbjct: 570 -KLLSLMEE-KG---CSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRV 624

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++     G++ +   +L  MK       +  +   I  + K  +F     + + +    
Sbjct: 625 LINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSK--SFIASLGILEEMESYG 682

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI-----TYECIITMYGYCDN 241
             P  P +  +I  + KA   G+ E   +    M   PS +      Y  +I        
Sbjct: 683 TVPIAPVYGMLIDCFSKA---GRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQ 739

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEA 270
           V  A  ++ E+++ G   ++S    +++ 
Sbjct: 740 VEEAFRLYSEMTRRGFVPELSVFVCLIKG 768


>gi|168039319|ref|XP_001772145.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676476|gb|EDQ62958.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 313

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 134/289 (46%), Gaps = 40/289 (13%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K RW + +   Y+K+I+  G+  Q +LA  LF EM   G +     YNALI    H+  +
Sbjct: 9   KLRWEV-NPKEYAKMISFAGRINQPQLAADLFDEMEKRGIKKTAVSYNALI----HSYGR 63

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
                KAL  F+ MK    C+P +VTYN L+   ++    +++  +F +  E+   PD +
Sbjct: 64  NNEPQKALQLFEYMKVTVDCQPTLVTYNTLISMYSRMGATEEMKKIFLDCTEAEFVPDRH 123

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++  Y + G + EME   + +++ +   D+IT+N LI  Y +  A DKME V  S+
Sbjct: 124 TYNALIWGYMRAGQLNEMEVTFNELQAKKFNADVITYNALIIGYARANAVDKMEVVLSSM 183

Query: 183 -----------MHS---------------------KEKPTL---PTFNSMIINYGKARLQ 207
                      +H+                     K+   +    T+N +I  YGK    
Sbjct: 184 QAVGIPINTMALHALIMAYSRAGTYDRLAKTMEVVKDAGWMLQPATYNILISEYGKVGYL 243

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
            K E  F++M      PSF T++ +I  Y   DN ++   I D + K G
Sbjct: 244 DKMEQAFREMMNASVKPSFETFQYMINAYEAADNETQVDRILDLMRKAG 292



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 114/255 (44%), Gaps = 8/255 (3%)

Query: 108 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK-SNQCKPDIITFNLLIDSY 166
           LF E+ +  +     +YN ++ +YG+N   ++   +   MK +  C+P ++T+N LI  Y
Sbjct: 38  LFDEMEKRGIKKTAVSYNALIHSYGRNNEPQKALQLFEYMKVTVDCQPTLVTYNTLISMY 97

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
            +  A ++M+++F     ++  P   T+N++I  Y +A    + E  F ++ A K+    
Sbjct: 98  SRMGATEEMKKIFLDCTEAEFVPDRHTYNALIWGYMRAGQLNEMEVTFNELQAKKFNADV 157

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           ITY  +I  Y   + V +   +   +  +G  +    L+A++ AY   G         E 
Sbjct: 158 ITYNALIIGYARANAVDKMEVVLSSMQAVGIPINTMALHALIMAYSRAGTYDRLAKTMEV 217

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLA 346
             + G     +TY +L   Y K    + +++  + M    + P       + ETF   + 
Sbjct: 218 VKDAGWMLQPATYNILISEYGKVGYLDKMEQAFREMMNASVKP-------SFETFQYMIN 270

Query: 347 GSQSGSAKTDLTRSL 361
             ++   +T + R L
Sbjct: 271 AYEAADNETQVDRIL 285


>gi|302780869|ref|XP_002972209.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
 gi|300160508|gb|EFJ27126.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
          Length = 363

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 116/243 (47%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +PN+VTYN L+        VD    L +E+  +   PDI TYN ++D   K G + E+  
Sbjct: 7   EPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEVNR 66

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +   MK+  C PD+IT++ LI  + K    +    +F  ++     P + TF +++  Y 
Sbjct: 67  LFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYC 126

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
            A L   AE + +++ A   +P   TY  ++  +     +  A  +   ++K      V 
Sbjct: 127 NAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPNVV 186

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
              A+++A+C  G PT A  L E     GV P++ TY+ L   +      E   K+L+R+
Sbjct: 187 IYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHKMLERL 246

Query: 323 EQN 325
           E+N
Sbjct: 247 ERN 249



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 124/277 (44%), Gaps = 8/277 (2%)

Query: 31  MWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90
           + L  EM  +GC PD + YN LI        K   + +    F +MK  + C P+++TY+
Sbjct: 30  LLLMEEMTATGCLPDINTYNTLIDGLC----KTGRVPEVNRLFGEMKA-KFCNPDVITYS 84

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
            L+    +   ++    LF ++ +    PD+ T+  +++ Y   G++ + E +L  + ++
Sbjct: 85  CLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEIVAS 144

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
            C PD+ T+  L+D + K +   +  +V K +   + +P +  + ++I  +  A     A
Sbjct: 145 DCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPNVVIYTALIDAFCSAGKPTVA 204

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL--NAML 268
             + ++M      P+ ITY  +I  +    ++  A ++ + L +  ++ K        M+
Sbjct: 205 YKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHKMLERLER-NENCKADMFAYRVMM 263

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           +  C  G  + A  L E     G  P    Y  L + 
Sbjct: 264 DGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRG 300



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 121/276 (43%), Gaps = 25/276 (9%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ LI  + K G+      LF EM+   C PD   Y+ LI        K   + 
Sbjct: 42  LPDINTYNTLIDGLCKTGRVPEVNRLFGEMKAKFCNPDVITYSCLIGGFC----KLDRIN 97

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            A   F  M   +   P++VT+  L+     A  VD    L +E+  S  +PD+YTY  +
Sbjct: 98  MACTLFDDML-KQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSL 156

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D + K   + E   VL RM   +C+P+++ +  LID++          ++ + ++ +  
Sbjct: 157 VDGFCKVKRMVEAHRVLKRMAKGECQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGV 216

Query: 188 KPTLPTFNSMIINY-GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
           +P   T+ S+I  + G   L+ +A  + +++   +         C   M+ Y       R
Sbjct: 217 QPNAITYRSLIGGFCGTGDLE-EAHKMLERLERNE--------NCKADMFAY-------R 260

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
            + D L + G   ++S    +LEA   +G P   D+
Sbjct: 261 VMMDGLCRTG---RMSAALELLEAIKQSGTPPRHDI 293



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 86/192 (44%)

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           +P+++T+N LI  +      D    + + +  +   P + T+N++I    K     +   
Sbjct: 7   EPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEVNR 66

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +F +M A    P  ITY C+I  +   D ++ A  +FD++ K      V T   ++E YC
Sbjct: 67  LFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYC 126

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             GL  +A+ L E       +PD  TY  L   + K        ++LKRM +    PN  
Sbjct: 127 NAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPNVV 186

Query: 333 FFLEALETFSSS 344
            +   ++ F S+
Sbjct: 187 IYTALIDAFCSA 198



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 4/130 (3%)

Query: 217 MTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           MT     P+ +TY  +I  +G+C  + V     + +E++  G    ++T N +++  C  
Sbjct: 1   MTIWGIEPNMVTYNSLI--HGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKT 58

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           G   E + LF         PD  TY  L   + K +   +   L   M +   +P+   F
Sbjct: 59  GRVPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTF 118

Query: 335 LEALETFSSS 344
              +E + ++
Sbjct: 119 PTLVEGYCNA 128


>gi|302826107|ref|XP_002994593.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
 gi|300137364|gb|EFJ04344.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
          Length = 521

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 144/316 (45%), Gaps = 14/316 (4%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
            + V+    + R A  LF ++    C P+   YN +I  +     KA   +KA   ++ M
Sbjct: 180 FLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVIY----GKAGEPSKAEMLYRSM 235

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +    C PNI T+  L+ A A+     +    F +L E    PD Y YN +M+AY + G 
Sbjct: 236 R-RAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGS 294

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
                 +   M+ N C PD ++ N+LI++YG+   ++  E++FKS+  +   P L +   
Sbjct: 295 PAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNML 354

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           ++  Y +A    +AE +   M      P  + Y  +I  YG      R  ++   L+K+ 
Sbjct: 355 LLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVS---GRHEDMEALLAKMV 411

Query: 257 KDMK------VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           K         + T N +++ Y   G    A+ LF+    + + PD++T+  L   Y K  
Sbjct: 412 KSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLARLKLVPDATTWTALMGGYAKKK 471

Query: 311 MKELVQKLLKRMEQNG 326
           +      +LK+M ++G
Sbjct: 472 LYRKCTSILKKMLESG 487



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 144/301 (47%), Gaps = 8/301 (2%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF +M+  G  P P   N      LH  + AK   +A   F+ ++  E C+PNI TYN +
Sbjct: 161 LFVQMQKRGYSPGPLACNTF----LHVLEDAKEYRRAEALFRDLEKYE-CEPNIDTYNRM 215

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +A    +   L++ +  ++  P+I T+  +M+A+ + G+ +E E    +++    
Sbjct: 216 IVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDY 275

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           KPD   +N L+++Y +  +     ++F+++  +   P   + N +I  YG+A L   AE 
Sbjct: 276 KPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEK 335

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +F+ M +  ++P+  +   +++ Y     V  A E+   + + G        N+++ AY 
Sbjct: 336 IFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYG 395

Query: 273 MNGLPTEADLLFEN---SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           ++G   + + L      S +    PD  TY  L + Y +A      ++L + + +  +VP
Sbjct: 396 VSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLARLKLVP 455

Query: 330 N 330
           +
Sbjct: 456 D 456



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 118/248 (47%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P++  YN+L+ A  ++ N++     F  + E++  P+  T+  +++ Y   G  ++ E 
Sbjct: 101 RPDLGCYNLLIDAYGKSLNIEDAEKTFNRMQEALCVPNEETFGVLINGYRLAGSFEKAEE 160

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +  +M+     P  +  N  +      + + + E +F+ L   + +P + T+N MI+ YG
Sbjct: 161 LFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVIYG 220

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           KA    KAE +++ M      P+  T+  ++  +        A   FD+L +        
Sbjct: 221 KAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDHY 280

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
             NA++EAY   G P  A  +F+     G  PD+ ++ +L  AY +A + E  +K+ K M
Sbjct: 281 AYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSM 340

Query: 323 EQNGIVPN 330
           +  G  PN
Sbjct: 341 QSAGFSPN 348



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 144/304 (47%), Gaps = 8/304 (2%)

Query: 27  TRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI 86
           T++  W+   ++ +  RPD   YN LI A+     K+  +  A   F +M+    C PN 
Sbjct: 88  TQMCEWV---LQGTTFRPDLGCYNLLIDAY----GKSLNIEDAEKTFNRMQEA-LCVPNE 139

Query: 87  VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 146
            T+ +L+     A + ++   LF ++ +   +P     N  +         +  E++   
Sbjct: 140 ETFGVLINGYRLAGSFEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRD 199

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           ++  +C+P+I T+N +I  YGK     K E +++S+  +   P + TF +++  + +  L
Sbjct: 200 LEKYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGL 259

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
             +AE  F K+    Y P    Y  ++  Y    + + A EIF  + + G      + N 
Sbjct: 260 YREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNI 319

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           ++ AY   GL  +A+ +F++  + G +P+  +  LL  AY +A   E  ++L+  ME++G
Sbjct: 320 LINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDG 379

Query: 327 IVPN 330
             P+
Sbjct: 380 TKPD 383



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 148/313 (47%), Gaps = 8/313 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+++I + GK G+   A  L+  MR + C P+   + AL+ A      +     +A  YF
Sbjct: 212 YNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFA----RQGLYREAERYF 267

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K++  +  KP+   YN L+ A +Q  +      +F+ +  +   PD  ++N +++AYG+
Sbjct: 268 DKLQEFDY-KPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGR 326

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G+ ++ E +   M+S    P++ +  LL+ +Y +    ++ E++  ++     KP    
Sbjct: 327 AGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLI 386

Query: 194 FNSMIINYGKARLQGKAEYVFQKM---TAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           +NS+I  YG +      E +  KM   ++ +  P   TY  +I +Y     + RA E+F 
Sbjct: 387 YNSLINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQ 446

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            L++L      +T  A++  Y    L  +   + +     G   D+ T ++L+ A     
Sbjct: 447 GLARLKLVPDATTWTALMGGYAKKKLYRKCTSILKKMLESGCRADAVTARVLFSACRSPE 506

Query: 311 MKELVQKLLKRME 323
             E V +L++ ++
Sbjct: 507 QVEQVTQLMESLQ 519



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 134/313 (42%), Gaps = 5/313 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D G Y+ LI   GK      A   F+ M+ + C P+   +  LI  +      A +  KA
Sbjct: 103 DLGCYNLLIDAYGKSLNIEDAEKTFNRMQEALCVPNEETFGVLINGY----RLAGSFEKA 158

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F +M+      P  +  N  L     A+   +  ALF++L +    P+I TYN ++ 
Sbjct: 159 EELFVQMQ-KRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIV 217

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK G   + E +   M+   C P+I TF  L++++ ++  + + E+ F  L     KP
Sbjct: 218 IYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKP 277

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               +N+++  Y +      A  +FQ M      P  +++  +I  YG       A +IF
Sbjct: 278 DHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIF 337

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             +   G    + +   +L AY   G   EA+ L       G  PD+  Y  L  AY  +
Sbjct: 338 KSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVS 397

Query: 310 NMKELVQKLLKRM 322
              E ++ LL +M
Sbjct: 398 GRHEDMEALLAKM 410



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 106/214 (49%), Gaps = 8/214 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D   Y+ L+    + G    A+ +F  M+ +GC PD   +N LI A+     +A   
Sbjct: 275 YKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAY----GRAGLY 330

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             A   F+ M+      PN+ +  +LL A A+A  V++   L   +      PD   YN 
Sbjct: 331 EDAEKIFKSMQSAG-FSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNS 389

Query: 127 VMDAYGKNGMIKEMESVLSRM---KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           +++AYG +G  ++ME++L++M    S Q KPDI T+N LI  Y +     + E++F+ L 
Sbjct: 390 LINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLA 449

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
             K  P   T+ +++  Y K +L  K   + +KM
Sbjct: 450 RLKLVPDATTWTALMGGYAKKKLYRKCTSILKKM 483


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 150/326 (46%), Gaps = 9/326 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           ++ D   Y  LI  + K G TR A  L  +M     RP+  +YN ++      +D     
Sbjct: 179 FLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGL--CKDGLVTE 236

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A+ L      +G++   P++ TY  L+          +V  L  ++ +  +  ++YTYN 
Sbjct: 237 ARDLYSDVVGRGID---PDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNI 293

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++DA  K GM+ +   + + M     +PD++TFN L+  Y       +  ++F +     
Sbjct: 294 LIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECG 353

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
             P + ++N +II Y K     +A  +F KM   K  P+ +TY  +I   G C +  +S 
Sbjct: 354 ITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLID--GLCKSGRISY 411

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A E+F  +   G    V T N ML+A C   L  +A  LF      G+TP+ S+Y +L  
Sbjct: 412 AWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILIN 471

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
            Y K+   +    L + M +  +VP+
Sbjct: 472 GYCKSKRIDEAMNLFEEMHRRNLVPD 497



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 139/304 (45%), Gaps = 15/304 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI      GQ R    L  +M +     +   YN LI A      K   L KA
Sbjct: 252 DVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALC----KKGMLGKA 307

Query: 70  LGYFQKMKGM--ERC-KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
                 M+ +  ER  +P++VT+N L+       +V +   LF    E  + PD+++YN 
Sbjct: 308 ----HDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNI 363

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y KN  I E  S+ ++M   +  P+I+T++ LID   K        ++F ++    
Sbjct: 364 LIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGG 423

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
             P + T+N M+    K +L  KA  +F  M     TP+  +Y  +I   GYC +  +  
Sbjct: 424 PSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILIN--GYCKSKRIDE 481

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  +F+E+ +        T N +++  C +G  + A  LF   H+ G   D  TY +L+ 
Sbjct: 482 AMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNILFD 541

Query: 305 AYTK 308
           A++K
Sbjct: 542 AFSK 545



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 7/158 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI  + K G+   A  LFS + + G  P+   YN ++ A      K + + KA+  F
Sbjct: 396 YSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALC----KIQLVDKAIELF 451

Query: 74  QKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             M   ER   PN+ +YNIL+    +++ +D+   LF+E+H   L PD  TYN ++D   
Sbjct: 452 NLM--FERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLC 509

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170
           K+G I     + + M       D+IT+N+L D++ K Q
Sbjct: 510 KSGRISHAWELFNVMHDGGPPVDVITYNILFDAFSKIQ 547



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 76/363 (20%), Positives = 136/363 (37%), Gaps = 98/363 (26%)

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           A+  A+  F ++  M    P++V +N++L +  + ++     +L K++    + P I T 
Sbjct: 58  AIDDAVALFTRLITMHPL-PSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTL 116

Query: 125 NGVMDAYGKNGMIKEMESVLSRM--------------------------KSNQCKPDIIT 158
           + +++ Y   G +    SVL  +                          K+ +    ++ 
Sbjct: 117 SILINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVA 176

Query: 159 FNLLID--SYG-----------KRQAFDKMEQVFKSLMHSKE----KPTLPTFNSMIINY 201
              L+D  +YG            R+AF+        L+H  E    +P +  +N ++   
Sbjct: 177 QGFLLDEVTYGTLINGLCKIGLTREAFE--------LLHKMEGQVVRPNVVIYNMIVDGL 228

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--------------------- 240
            K  L  +A  ++  +      P   TY C+I  +G+C                      
Sbjct: 229 CKDGLVTEARDLYSDVVGRGIDPDVFTYTCLI--HGFCGLGQWREVTRLLCDMVDRNVNL 286

Query: 241 NVSRAREIFDELSK---LGK--DMK-----------VSTLNAMLEAYCMNGLPTEADLLF 284
           NV     + D L K   LGK  DM+           + T N ++  YC+     EA  LF
Sbjct: 287 NVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLF 346

Query: 285 ENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           +     G+TPD  +Y +L   Y K N  +    L  +M    + PN       + T+SS 
Sbjct: 347 DTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPN-------IVTYSSL 399

Query: 345 LAG 347
           + G
Sbjct: 400 IDG 402



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 3/166 (1%)

Query: 168 KRQAFDKMEQ---VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 224
           K+  FD ++    +F  L+     P++  FN ++ +  K +    A  + ++M     TP
Sbjct: 52  KKSGFDAIDDAVALFTRLITMHPLPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITP 111

Query: 225 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 284
           S +T   +I  Y +  ++  A  +   + K G  +   TL  +++  C+NG   +A    
Sbjct: 112 SIVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFH 171

Query: 285 ENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           ++    G   D  TY  L     K  +     +LL +ME   + PN
Sbjct: 172 DSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPN 217


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 154/356 (43%), Gaps = 39/356 (10%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I D    + LI    + G+TR A  +   + NSG  PD   YN LI  +     K+  + 
Sbjct: 139 IPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYC----KSGEID 194

Query: 68  KALGYFQKM------------------------------KGMER-CKPNIVTYNILLRAC 96
           KAL   ++M                              + M+R C P+++TY IL+ A 
Sbjct: 195 KALQVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEAT 254

Query: 97  AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
                V Q   L  E+ +    PD+ TYN +++   K G + E    L+ M    C+P++
Sbjct: 255 CNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNV 314

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           IT N+++ S      +   E++   ++     P++ TFN +I    + RL G+A  V +K
Sbjct: 315 ITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEK 374

Query: 217 MTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           M      P+ ++Y  +  ++G+C    + RA E  + +   G    + T N +L A C +
Sbjct: 375 MPKHGCMPNSLSYNPL--LHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKD 432

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           G    A  +     + G +P   TY  +    TK    E   +LL+ M + G+ P+
Sbjct: 433 GKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPD 488



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 148/342 (43%), Gaps = 7/342 (2%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           Q QR    D   Y+ LI           AM L  EMR  GC+PD   YN LI        
Sbjct: 235 QMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGIC---- 290

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPD 120
           K   L +A+ +   M  +  C+PN++T+NI+LR+ C+  R +D    L  ++     +P 
Sbjct: 291 KEGRLDEAIKFLNNMP-LYGCQPNVITHNIILRSMCSTGRWMD-AERLLADMLRKGCSPS 348

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + T+N +++   +  ++     VL +M  + C P+ +++N L+  + + +  D+  +  +
Sbjct: 349 VVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLE 408

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++     P + T+N+++    K      A  +  ++++   +P  ITY  +I       
Sbjct: 409 IMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVG 468

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
               A E+ +E+ + G    + T + +L      G   EA  +F +   + + P + TY 
Sbjct: 469 KTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYN 528

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            +     KA         L  M + G  P K  +   +E  +
Sbjct: 529 AIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIEGIA 570



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 82/200 (41%), Gaps = 7/200 (3%)

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           +NG ++E    L RM      PD+I    LI  + +     K  ++ + L +S   P + 
Sbjct: 119 RNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVI 178

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFD 250
           T+N +I  Y K+   G+ +   Q +  M   P  +TY  I  +   CD+  +  A E+ D
Sbjct: 179 TYNVLIGGYCKS---GEIDKALQVLERMSVAPDVVTYNTI--LRSLCDSGKLKEAMEVLD 233

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
              +      V T   ++EA C +    +A  L +     G  PD  TY +L     K  
Sbjct: 234 RQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEG 293

Query: 311 MKELVQKLLKRMEQNGIVPN 330
             +   K L  M   G  PN
Sbjct: 294 RLDEAIKFLNNMPLYGCQPN 313


>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
 gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
 gi|223948163|gb|ACN28165.1| unknown [Zea mays]
 gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
          Length = 786

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 142/322 (44%), Gaps = 8/322 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++  + + G+   A+ LF+E+R  G  P    YN ++  +       ++  + 
Sbjct: 173 DVRAYTTVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRM---GRSWPRI 229

Query: 70  LGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +    +M+  G+E   P+  T + ++ AC +   VD+  A F++L     AP + TYN +
Sbjct: 230 VALLDEMRAAGVE---PDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNAL 286

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  +GK G   E   VL  M+ N C+PD +T+N L  +Y +   F++  +   ++     
Sbjct: 287 LQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGL 346

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P   T+N+++  YG      +A  +F +M    + P+  TY  ++ M G     +   E
Sbjct: 347 LPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLE 406

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +  E+S+ G      T N ML      G+      + E   + GV     TY  L  AY 
Sbjct: 407 MLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYG 466

Query: 308 KANMKELVQKLLKRMEQNGIVP 329
           +   +    K+   M   G  P
Sbjct: 467 RCGSRTNAFKMYNEMTSAGFTP 488



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 135/296 (45%), Gaps = 5/296 (1%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S +IA   + G    A+  F +++  G  P    YNAL    L    KA    +AL    
Sbjct: 249 STVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNAL----LQVFGKAGNYTEALRVLG 304

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M+    C+P+ VTYN L    A+A   ++       +    L P+ +TYN VM AYG  
Sbjct: 305 EME-QNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNV 363

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G + E  ++  +MK     P++ T+NL++   GK+  F  M ++   +  S   P   T+
Sbjct: 364 GKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTW 423

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N+M+   GK  ++     V + M +     S  TY  +I  YG C + + A ++++E++ 
Sbjct: 424 NTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTS 483

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            G    ++T NA+L      G  + A  +       G  P+  +Y LL + Y K  
Sbjct: 484 AGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGG 539



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 162/379 (42%), Gaps = 48/379 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  ++ +   Y+ ++ ++GKK +  + + +  EM  SGC P+   +N ++ A    R  
Sbjct: 377 KKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTML-AVCGKRGM 435

Query: 63  AKALAKALGYFQKMKGMERCKPNIV--TYNILLRACAQARNVDQVNALFKELHESILAPD 120
              + + L      +GM  C   +   TYN L+ A  +  +      ++ E+  +   P 
Sbjct: 436 EDYVTRVL------EGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPC 489

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR----------- 169
           I TYN +++   + G     +S++S+M++   KP+  +++LL+  Y K            
Sbjct: 490 ITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIEN 549

Query: 170 -------------------------QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
                                    +  D ME  F+ +      P L  FNSM+  Y K 
Sbjct: 550 EVYGSGAVFPSWVILRTLVIANFKCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKN 609

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK--VS 262
            +  KA  VF  +     +P  ITY  ++ MY  C     A +I ++L K  + MK  V 
Sbjct: 610 GMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAEKILNQL-KCSQTMKPDVV 668

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           + N ++  +C  GL  EA  +       G+ P + TY  L   Y+   M    ++++  M
Sbjct: 669 SYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSSLEMFSEAREVIGYM 728

Query: 323 EQNGIVPNKRFFLEALETF 341
            Q+G+ P +  +   +E++
Sbjct: 729 VQHGLKPMELTYRRVVESY 747



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 129/282 (45%), Gaps = 23/282 (8%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K R +      Y+ L+ V GK G    A+ +  EM  +GC+PD   YN L          
Sbjct: 272 KARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNEL---------- 321

Query: 63  AKALAKALGYFQKMKGMERCK---------PNIVTYNILLRACAQARNVDQVNALFKELH 113
           A   A+A G+F++     RC          PN  TYN ++ A      VD+  ALF ++ 
Sbjct: 322 AGTYARA-GFFEEAA---RCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMK 377

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
           ++   P++ TYN V+   GK      M  +L  M  + C P+ +T+N ++   GKR   D
Sbjct: 378 KTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMED 437

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
            + +V + +     + +  T+N++I  YG+   +  A  ++ +MT+  +TP   TY  ++
Sbjct: 438 YVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALL 497

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            +     + S A+ I  ++   G      + + +L+ Y   G
Sbjct: 498 NVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGG 539



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 127/261 (48%), Gaps = 7/261 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+ V+ ++G    A  + S+MR  G +P+   Y+ L+  +     K   +A      
Sbjct: 493 YNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYA----KGGNVAGIAAIE 548

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++ G     P+ V    L+ A  + R +D +   F+E+      PD+  +N ++  Y K
Sbjct: 549 NEVYGSGAVFPSWVILRTLVIANFKCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAK 608

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLP 192
           NGM  +   V   +K +   PD+IT+N L+D Y K     + E++   L  S+  KP + 
Sbjct: 609 NGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKCSQTMKPDVV 668

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           ++N++I  + K  L  +A+ V  +M A    P  +TY  ++  Y   +  S ARE+   +
Sbjct: 669 SYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSSLEMFSEAREVIGYM 728

Query: 253 SKLG-KDMKVSTLNAMLEAYC 272
            + G K M++ T   ++E+YC
Sbjct: 729 VQHGLKPMEL-TYRRVVESYC 748



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 138/333 (41%), Gaps = 46/333 (13%)

Query: 5   RWY----IADTGIYSKLIAVMGKKGQTRLAMWLFSEMR-NSGCRPDPSVYNALITAHLHT 59
           RW      AD      ++  +G++GQ      L  E     G R D   Y    T  LH 
Sbjct: 128 RWAGKEGAADASALEMVVRALGREGQHDAVCALLDETPLPPGSRLDVRAY----TTVLHA 183

Query: 60  RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHESILA 118
             +A    +AL  F +++  +   P +VTYN++L    +  R+  ++ AL  E+  + + 
Sbjct: 184 LSRAGRYERALELFAELR-RQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVE 242

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD +T + V+ A  ++G++ E  +    +K+    P ++T+N L+  +GK   + +  +V
Sbjct: 243 PDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRV 302

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
              +  +  +P   T+N +   Y +A    +A      M +    P+  TY  ++T YG 
Sbjct: 303 LGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYG- 361

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             NV +                                  EA  LF+     G  P+ +T
Sbjct: 362 --NVGKV--------------------------------DEALALFDQMKKTGFVPNVNT 387

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           Y L+     K +   ++ ++L  M ++G  PN+
Sbjct: 388 YNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNR 420



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 88/173 (50%), Gaps = 6/173 (3%)

Query: 34  FSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 93
           F E++  G  PD  ++N++++ +     K    +KA   F  +K      P+++TYN L+
Sbjct: 584 FQEVKARGYNPDLVIFNSMLSIYA----KNGMYSKATEVFDSIK-RSGLSPDLITYNSLM 638

Query: 94  RACAQARNVDQVNALFKELHES-ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
              A+     +   +  +L  S  + PD+ +YN V++ + K G++KE + VLS M ++  
Sbjct: 639 DMYAKCSESWEAEKILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGM 698

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
            P  +T++ L+  Y   + F +  +V   ++    KP   T+  ++ +Y +A+
Sbjct: 699 APCAVTYHTLVGGYSSLEMFSEAREVIGYMVQHGLKPMELTYRRVVESYCRAK 751



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 88/208 (42%), Gaps = 2/208 (0%)

Query: 139 EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF-KSLMHSKEKPTLPTFNSM 197
           E    L R    +   D     +++ + G+    D +  +  ++ +    +  +  + ++
Sbjct: 121 EWALALLRWAGKEGAADASALEMVVRALGREGQHDAVCALLDETPLPPGSRLDVRAYTTV 180

Query: 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD-NVSRAREIFDELSKLG 256
           +    +A    +A  +F ++      P+ +TY  ++ +YG    +  R   + DE+   G
Sbjct: 181 LHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAG 240

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
            +    T + ++ A C +GL  EA   FE+    G  P   TY  L + + KA       
Sbjct: 241 VEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEAL 300

Query: 317 KLLKRMEQNGIVPNKRFFLEALETFSSS 344
           ++L  MEQNG  P+   + E   T++ +
Sbjct: 301 RVLGEMEQNGCQPDAVTYNELAGTYARA 328


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 162/368 (44%), Gaps = 47/368 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I V  K G  +  + ++ +M  +   PD + +N LI + L   D+ +      G  
Sbjct: 68  YSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDS-LAKADQVEEACNVFGDM 126

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+       P++ TY IL+R+      +D V  LF+ +      P+++TY+ VM A+G 
Sbjct: 127 FKLN----VSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGS 182

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + E   +  +M     +PD +T+N+LID++GK     ++E+ F  +  S+      T
Sbjct: 183 AGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKT---GQLERAFDFVGKSRSFTNEVT 239

Query: 194 FNSMIINYG-KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF--- 249
           +NS++ + G K  +QG  E +F +M A     + +TY  +I   G+   V    +++   
Sbjct: 240 YNSLLSSLGRKGDIQGLME-LFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEM 298

Query: 250 ----------------DELSKLGK---------DMKVSTLNAMLEAY--CMNGL------ 276
                           D LSK G+         DMK   LNA    Y   +NGL      
Sbjct: 299 VDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKL 358

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
                LL E   N G  P+  TY  L  +Y K +      +L   M++ G+ PN   +  
Sbjct: 359 DAAGALLLEMEEN-GCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSS 417

Query: 337 ALETFSSS 344
            +E F  +
Sbjct: 418 LIEGFGKA 425



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 133/313 (42%), Gaps = 8/313 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  ++   G  G+   A  +F +M   G +PD   YN LI A      K   L +A  + 
Sbjct: 173 YHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAF----GKTGQLERAFDFV 228

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
               G  R   N VTYN LL +  +  ++  +  LF ++    L  +  TY  +++  G 
Sbjct: 229 ----GKSRSFTNEVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGW 284

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++++  +   M  N  K DI+T N ++D   K    +   ++F+ +          T
Sbjct: 285 AGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVT 344

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N +I   G+A     A  +  +M      P+ ITY  +I+ YG   N+S A  +F E+ 
Sbjct: 345 YNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMK 404

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G    V + ++++E +   G    A  LF      G  P+  TY LL     +A    
Sbjct: 405 ERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGRFG 464

Query: 314 LVQKLLKRMEQNG 326
              + L+ M   G
Sbjct: 465 AAMEYLREMRDAG 477



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 148/326 (45%), Gaps = 18/326 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI  +G  G+    M LF  M   GC+P+   Y+++    +H    A  + +A
Sbjct: 134 DVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSV----MHAFGSAGRVDEA 189

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              FQ+M  KG++   P+ VTYNIL+ A  +     Q+   F  + +S    +  TYN +
Sbjct: 190 CDIFQQMVQKGLQ---PDAVTYNILIDAFGK---TGQLERAFDFVGKSRSFTNEVTYNSL 243

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           + + G+ G I+ +  +  +MK+     + +T+ +LI+  G     + + Q++  ++ +  
Sbjct: 244 LSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDI 303

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY---TPSFITYECIITMYGYCDNVSR 244
           K  + T N+++    KA   G+ E  F+    MK+       +TY  +I   G    +  
Sbjct: 304 KYDIVTINNVLDCLSKA---GRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDA 360

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  +  E+ + G    + T N ++ +Y      + A  LF      GV P+  +Y  L +
Sbjct: 361 AGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIE 420

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
            + KA   +    L + M+  G  PN
Sbjct: 421 GFGKAGRTDAAISLFREMKAEGCPPN 446



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 124/251 (49%), Gaps = 9/251 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L++ +G+KG  +  M LF +M+  G   +   Y A++   L    + + + +   Y 
Sbjct: 240 YNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTY-AILIERLGWAGRVEDVWQL--YL 296

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + +      K +IVT N +L   ++A  V+    LF+++    L  D  TYN +++  G+
Sbjct: 297 EMVD--NDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGR 354

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +    ++L  M+ N C P+IIT+N LI SYGK        ++F  +      P + +
Sbjct: 355 AGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVS 414

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY----ECIITMYGYCDNVSRAREIF 249
           ++S+I  +GKA     A  +F++M A    P+ +TY    +C+I    +   +   RE+ 
Sbjct: 415 YSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGRFGAAMEYLREMR 474

Query: 250 DELSKLGKDMK 260
           D   ++GK  K
Sbjct: 475 DAGCQMGKVTK 485



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 130/295 (44%), Gaps = 8/295 (2%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           L   M+    + D  ++N LI  +       KAL + L  F K  G    +P   TY+ +
Sbjct: 17  LVESMQKDRTKLDTQLFNTLIHIYGEANMMEKAL-QTLAAFTKEGG----RPTAYTYSSM 71

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           ++   +  +V     ++K++ ++   PD  T+N ++D+  K   ++E  +V   M     
Sbjct: 72  IQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNV 131

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            PD+ T+ +LI S G     D + ++F+S+     +P L T++S++  +G A    +A  
Sbjct: 132 SPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACD 191

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +FQ+M      P  +TY  +I  +G    + RA   FD + K        T N++L +  
Sbjct: 192 IFQQMVQKGLQPDAVTYNILIDAFGKTGQLERA---FDFVGKSRSFTNEVTYNSLLSSLG 248

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
             G       LF      G+  +  TY +L +    A   E V +L   M  N I
Sbjct: 249 RKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDI 303



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 97/222 (43%)

Query: 92  LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151
           +L     AR  D V  L + + +     D   +N ++  YG+  M+++    L+      
Sbjct: 1   MLTLLGAARRYDDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEG 60

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
            +P   T++ +I  + K         ++K ++ +K  P   TFN +I +  KA    +A 
Sbjct: 61  GRPTAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEAC 120

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
            VF  M  +  +P   TY  +I   G    +    ++F+ ++  G    + T ++++ A+
Sbjct: 121 NVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAF 180

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
              G   EA  +F+     G+ PD+ TY +L  A+ K    E
Sbjct: 181 GSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLE 222



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 77/156 (49%), Gaps = 7/156 (4%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           ADT  Y+ LI  +G+ G+   A  L  EM  +GC P+   YN LI+++     K   L+ 
Sbjct: 340 ADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSY----GKWSNLSA 395

Query: 69  ALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           A   F +MK  ER   PN+V+Y+ L+    +A   D   +LF+E+      P+  TYN +
Sbjct: 396 ATRLFLEMK--ERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLL 453

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +D   + G        L  M+   C+   +T +LL+
Sbjct: 454 IDCLIRAGRFGAAMEYLREMRDAGCQMGKVTKSLLV 489



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 83/192 (43%)

Query: 139 EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 198
           +++ ++  M+ ++ K D   FN LI  YG+    +K  Q   +      +PT  T++SMI
Sbjct: 13  DVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYTYSSMI 72

Query: 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 258
             + K         ++++M   K+ P   T+  +I      D V  A  +F ++ KL   
Sbjct: 73  QVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVS 132

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
             V T   ++ +    G       LFE+    G  P+  TY  +  A+  A   +    +
Sbjct: 133 PDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDI 192

Query: 319 LKRMEQNGIVPN 330
            ++M Q G+ P+
Sbjct: 193 FQQMVQKGLQPD 204



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 78/178 (43%)

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
           G  + +D ++++ +S+   + K     FN++I  YG+A +  KA       T     P+ 
Sbjct: 6   GAARRYDDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGRPTA 65

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
            TY  +I ++    +V     ++ ++ K       +T N ++++        EA  +F +
Sbjct: 66  YTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGD 125

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
              + V+PD  TY +L ++       + V KL + M   G  PN   +   +  F S+
Sbjct: 126 MFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSA 183



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 7/109 (6%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+R    +   YS LI   GK G+T  A+ LF EM+  GC P+   YN LI   +    +
Sbjct: 404 KERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLI----R 459

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE 111
           A     A+ Y ++M+    C+   VT ++L+R   Q   +++  + F+E
Sbjct: 460 AGRFGAAMEYLREMRD-AGCQMGKVTKSLLVRIPPQY--MEEAQSFFQE 505


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 148/317 (46%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I+ + K G+   A  +   M+N    PD  VY  LI+       K+  ++     F
Sbjct: 325 YNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGF----GKSGNVSVEYKLF 380

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +MK  ++  P+ VTY  ++    QA  V +   LF E+    L PD  TY  ++D Y K
Sbjct: 381 DEMK-RKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCK 439

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +KE  S+ ++M      P+++T+  L+D   K    D   ++   +     +P + T
Sbjct: 440 AGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCT 499

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N++I    K     +A  + ++M    + P  ITY  I+  Y     +++A E+   + 
Sbjct: 500 YNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIML 559

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    + T N ++  +CM+G+  + + L +   + G+ P+++T+  L K Y   N   
Sbjct: 560 DKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMR 619

Query: 314 LVQKLLKRMEQNGIVPN 330
              ++ K M   G+VP+
Sbjct: 620 ATIEIYKGMHAQGVVPD 636



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 154/334 (46%), Gaps = 9/334 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K++  + D   Y+ +I  + + G+   A  LFSEM + G +PD   Y ALI  +     K
Sbjct: 384 KRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYC----K 439

Query: 63  AKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           A  + +A     +M  KG+    PN+VTY  L+    +   VD  N L  E+ E  L P+
Sbjct: 440 AGEMKEAFSLHNQMVEKGL---TPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPN 496

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TYN +++   K G I++   ++  M      PD IT+  ++D+Y K     K  ++ +
Sbjct: 497 VCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLR 556

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++    +PT+ TFN ++  +  + +    E + + M      P+  T+  ++  Y   +
Sbjct: 557 IMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRN 616

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           N+    EI+  +   G     +T N +++ +C      EA  L +     G +  +++Y 
Sbjct: 617 NMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYN 676

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            L K + K    E  +KL + M  +G +  K  +
Sbjct: 677 SLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIY 710



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 140/320 (43%), Gaps = 5/320 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           +T  Y+ ++ ++ + G+ + A  L  +M   G  PD   Y+ ++  +       K L K 
Sbjct: 251 NTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVL-KL 309

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +   Q+ KG+   KPN  TYN ++    +   V +   + + +    + PD   Y  ++ 
Sbjct: 310 MEELQR-KGL---KPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLIS 365

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +GK+G +     +   MK  +  PD +T+  +I    +     +  ++F  ++    KP
Sbjct: 366 GFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKP 425

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T+ ++I  Y KA    +A  +  +M     TP+ +TY  ++     C  V  A E+ 
Sbjct: 426 DEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELL 485

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+S+ G    V T NA++   C  G   +A  L E     G  PD+ TY  +  AY K 
Sbjct: 486 HEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKM 545

Query: 310 NMKELVQKLLKRMEQNGIVP 329
                  +LL+ M   G+ P
Sbjct: 546 GEMAKAHELLRIMLDKGLQP 565



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 141/330 (42%), Gaps = 5/330 (1%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R  + D   YS ++    +  Q    + L  E++  G +P+   YN++I+       K  
Sbjct: 281 RGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLC----KTG 336

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            + +A    + MK  +R  P+ V Y  L+    ++ NV     LF E+    + PD  TY
Sbjct: 337 RVVEAEQVLRVMKN-QRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTY 395

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
             ++    + G + E   + S M S   KPD +T+  LID Y K     +   +   ++ 
Sbjct: 396 TSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVE 455

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P + T+ +++    K      A  +  +M+     P+  TY  +I       N+ +
Sbjct: 456 KGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQ 515

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A ++ +E+   G      T   +++AYC  G   +A  L     + G+ P   T+ +L  
Sbjct: 516 AVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMN 575

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            +  + M E  ++L+K M   GI+PN   F
Sbjct: 576 GFCMSGMLEDGERLIKWMLDKGIMPNATTF 605



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 140/320 (43%), Gaps = 8/320 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           ++     V+ + G    A  LF ++ N G        N  +    ++ D    +  A   
Sbjct: 183 VFDVFFQVLVEAGLLLEAGKLFDKLLNYGVLVSVDSCNLFLARLSNSFD---GIRTAFRV 239

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F++   +  C  N V+YNI+L    Q   V + ++L  ++      PD+ +Y+ ++D Y 
Sbjct: 240 FREYSEVGVCW-NTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYC 298

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           +   + ++  ++  ++    KP+  T+N +I    K     + EQV + + + +  P   
Sbjct: 299 QVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNV 358

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFD 250
            + ++I  +GK+        +F +M   K  P F+TY  +I  +G C    V  AR++F 
Sbjct: 359 VYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMI--HGLCQAGKVVEARKLFS 416

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+   G      T  A+++ YC  G   EA  L       G+TP+  TY  L     K  
Sbjct: 417 EMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCG 476

Query: 311 MKELVQKLLKRMEQNGIVPN 330
             ++  +LL  M + G+ PN
Sbjct: 477 EVDIANELLHEMSEKGLQPN 496



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 103/238 (43%), Gaps = 5/238 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  + K G    A+ L  EM  +G  PD   Y  ++ A+    + AKA    L   
Sbjct: 500 YNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKA--HELLRI 557

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
              KG++   P IVT+N+L+     +  ++    L K + +  + P+  T+N +M  Y  
Sbjct: 558 MLDKGLQ---PTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCI 614

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              ++    +   M +    PD  T+N+LI  + K +   +   + K ++      T  +
Sbjct: 615 RNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAAS 674

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
           +NS+I  + K +   +A  +F++M    +      Y+  + +     N     E+ DE
Sbjct: 675 YNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENTLELCDE 732



 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 41/92 (44%)

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           D +  A  +F E S++G      + N +L   C  G   EA  L       G  PD  +Y
Sbjct: 231 DGIRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSY 290

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
            ++   Y +      V KL++ +++ G+ PN+
Sbjct: 291 SVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQ 322


>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial [Vitis vinifera]
 gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 153/322 (47%), Gaps = 13/322 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMW--LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           YS +I  + +  ++  +M   +++E+ +     D  + N +I     + D  +A++    
Sbjct: 222 YSFIIQSLTRTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVGFAKSGDVNRAMS---- 277

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            F  M       P   T   ++ A   A   ++  A+F+EL E  L P    YN ++  Y
Sbjct: 278 -FLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGY 336

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G +K+ ES++S M+ +   PD  T++LLID+Y     ++    V K +  S  +P  
Sbjct: 337 VKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNS 396

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVSRAREI 248
             F+ ++ +Y   R +GK +  FQ +  M+    +P    Y  +I  +G C+ +  A   
Sbjct: 397 YVFSRILASY---RDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALAT 453

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           FD +   G      T N +++ +C +G   +A+ LFE     G +P ++TY ++  ++ +
Sbjct: 454 FDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGE 513

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
               E V+ LL +M+  G++ N
Sbjct: 514 QERWEDVKTLLGKMQSQGLLAN 535



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 146/322 (45%), Gaps = 9/322 (2%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T     +I  +G  G+T  A  +F E++  G  P    YNAL+  ++    K  +L  A 
Sbjct: 291 TATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYV----KTGSLKDAE 346

Query: 71  GYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
               +M   ER    P+  TY++L+ A A A   +    + KE+  S + P+ Y ++ ++
Sbjct: 347 SIVSEM---ERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRIL 403

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            +Y   G  ++   VL  M+++   PD   +N++ID++GK    D     F  +     +
Sbjct: 404 ASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQ 463

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   T+N++I  + K+    KAE +F+ M     +P   TY  +I  +G  +     + +
Sbjct: 464 PDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTL 523

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             ++   G    V T   +++ Y  +G   +A    E   ++G+ P S+ Y  L  AY +
Sbjct: 524 LGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQ 583

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
             + E      + M  +G+ P+
Sbjct: 584 RGLSEQAINAFRVMRADGLKPS 605



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 143/320 (44%), Gaps = 5/320 (1%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T  Y+ L+    K G  + A  + SEM  SG  PD   Y+ LI A+ +    A     A 
Sbjct: 326 TRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYAN----AGRWESAR 381

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
              ++M+     +PN   ++ +L +        +   + +E+  S ++PD + YN ++D 
Sbjct: 382 IVLKEMEA-SGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDT 440

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           +GK   +    +   RM+    +PD +T+N LID + K    +K E++F+++  S   P 
Sbjct: 441 FGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPC 500

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             T+N MI ++G+       + +  KM +     + +TY  ++ +YG       A E  +
Sbjct: 501 TTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLE 560

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            +  +G     +  NA++ AY   GL  +A   F      G+ P       L  A+ +  
Sbjct: 561 VMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDR 620

Query: 311 MKELVQKLLKRMEQNGIVPN 330
                  +L+ M++N + P+
Sbjct: 621 RDAEAFSVLQYMKENDLKPD 640



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 146/326 (44%), Gaps = 5/326 (1%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           +  D   YS LI      G+   A  +  EM  SG RP+  V++ ++ ++   RD+ K  
Sbjct: 357 FSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASY---RDRGK-W 412

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            K+    ++M+      P+   YN+++    +   +D   A F  +    + PD  T+N 
Sbjct: 413 QKSFQVLREMRN-SGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNT 471

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++D + K+G   + E +   M+ + C P   T+N++I+S+G+++ ++ ++ +   +    
Sbjct: 472 LIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQG 531

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
               + T+ +++  YG++     A    + M ++   PS   Y  +I  Y       +A 
Sbjct: 532 LLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAI 591

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
             F  +   G    V  LN+++ A+  +    EA  + +      + PD  TY  L KA 
Sbjct: 592 NAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKAL 651

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKR 332
            +    + V  + + M  +G  P+++
Sbjct: 652 IRVEKFDKVPAVYEEMTLSGCTPDRK 677



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 113/255 (44%), Gaps = 7/255 (2%)

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y+IL+ A  ++  + +    F       L P   TYN ++ A  +N  +++  +++SRM+
Sbjct: 157 YSILIHALGRSEKLYEA---FLLSQRQTLTP--LTYNALIGACARNDDLEKALNLMSRMR 211

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDK--MEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
            +    D + ++ +I S  +    D   +++++  +   K +      N +I+ + K+  
Sbjct: 212 RDGFPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVGFAKSGD 271

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
             +A      +     +P   T   +IT  G       A  IF+EL + G   +    NA
Sbjct: 272 VNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNA 331

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           +L+ Y   G   +A+ +       G +PD  TY LL  AY  A   E  + +LK ME +G
Sbjct: 332 LLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASG 391

Query: 327 IVPNKRFFLEALETF 341
           + PN   F   L ++
Sbjct: 392 VRPNSYVFSRILASY 406



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 130/320 (40%), Gaps = 12/320 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +YS LI  +G+  +   A +L S+ +       P  YNALI A     D    L KAL  
Sbjct: 156 LYSILIHALGRSEKLYEA-FLLSQRQTL----TPLTYNALIGACARNDD----LEKALNL 206

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQ--VNALFKELHESILAPDIYTYNGVMDA 130
             +M+  +    + V Y+ ++++  +    D   +  ++ E+    +  D    N ++  
Sbjct: 207 MSRMR-RDGFPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVG 265

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K+G +    S L+ ++ N   P   T   +I + G     ++ E +F+ L      P 
Sbjct: 266 FAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPR 325

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
              +N+++  Y K      AE +  +M    ++P   TY  +I  Y        AR +  
Sbjct: 326 TRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLK 385

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+   G        + +L +Y   G   ++  +     N GV+PD   Y ++   + K N
Sbjct: 386 EMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCN 445

Query: 311 MKELVQKLLKRMEQNGIVPN 330
             +       RM   G+ P+
Sbjct: 446 CLDHALATFDRMRMEGVQPD 465



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 90/182 (49%), Gaps = 14/182 (7%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ Q   +A+   Y+ L+ + G+ G+ + A+     M++ G +P  ++YNALI A+    
Sbjct: 527 MQSQ-GLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQ-- 583

Query: 61  DKAKALA-KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
              + L+ +A+  F+ M+  +  KP+++  N L+ A  + R   +  ++ + + E+ L P
Sbjct: 584 ---RGLSEQAINAFRVMRA-DGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKP 639

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D+ TY  +M A  +     ++ +V   M  + C PD     +L      R A   ME+  
Sbjct: 640 DVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPDRKARAML------RSALRYMERTL 693

Query: 180 KS 181
           KS
Sbjct: 694 KS 695


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 153/316 (48%), Gaps = 11/316 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K GQT+ A+ +   +     R D  +YN +I        K K +  A  ++
Sbjct: 177 YRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDG----VCKDKLVNDAFDFY 232

Query: 74  QKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            +M     C P +VTYN L+   C   +  D +  L K + E+I  P +YT++ ++DA+ 
Sbjct: 233 SEMVAKRIC-PTVVTYNTLICGLCIMGQLKDAIGLLHKMILENI-NPTVYTFSILVDAFC 290

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G +KE ++V   M     KP+I+T+N L++ Y      +K E +F ++      P + 
Sbjct: 291 KEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVH 350

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFD 250
           +++ MI  + K ++  +A  +F++M   +  P  +TY  +I   G C +  +S A ++  
Sbjct: 351 SYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLID--GLCKSGRISYALKLIG 408

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+   G+   + T N++L+A C N    +A  L     +  + P   TY +L     K+ 
Sbjct: 409 EMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSG 468

Query: 311 MKELVQKLLKRMEQNG 326
             +  QK+ + +  NG
Sbjct: 469 RLKDAQKVFEDVLVNG 484



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 130/321 (40%), Gaps = 15/321 (4%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL-----AKA 69
           S LI    + G   L+  +FS +   G  PD      LI       D  KAL       A
Sbjct: 108 SILINCFSQLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLA 167

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           LG+          + N V+Y  L+    +         + + +   ++  D+  YN ++D
Sbjct: 168 LGF----------QLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIID 217

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K+ ++ +     S M + +  P ++T+N LI              +   ++     P
Sbjct: 218 GVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINP 277

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           T+ TF+ ++  + K     +A+ VF  M      P+ +TY  ++  Y   + V++A  IF
Sbjct: 278 TVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIF 337

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           + ++++G    V + + M+  +C   +  EA  LFE  H   + PD  TY  L     K+
Sbjct: 338 NTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKS 397

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
                  KL+  M   G  PN
Sbjct: 398 GRISYALKLIGEMHDRGQPPN 418



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 122/265 (46%), Gaps = 9/265 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  +   GQ + A+ L  +M      P    ++ L+ A      K   + +A   F
Sbjct: 247 YNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFC----KEGKVKEAKNVF 302

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             M   +  KPNIVTYN L+        V++  ++F  + +  +APD+++Y+ ++  + K
Sbjct: 303 VVMMKKD-VKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCK 361

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
             M+ E   +   M   Q  PD++T+N LID   K        ++   +    + P + T
Sbjct: 362 IKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIIT 421

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDE 251
           +NS++    K     KA  +  K+      PS  TY  +I   G C +  +  A+++F++
Sbjct: 422 YNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILIN--GLCKSGRLKDAQKVFED 479

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGL 276
           +   G ++ V T N M++ +C  G 
Sbjct: 480 VLVNGYNIDVYTYNTMIKGFCKKGF 504



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 135/303 (44%), Gaps = 13/303 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ +I  + K      A   +SEM      P    YN LI            L  A
Sbjct: 208 DVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICG----LCIMGQLKDA 263

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +G   KM  +E   P + T++IL+ A  +   V +   +F  + +  + P+I TYN +M+
Sbjct: 264 IGLLHKMI-LENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMN 322

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK- 188
            Y     + + ES+ + M      PD+ +++++I  + K +  D+  ++F+  MH K+  
Sbjct: 323 GYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEE-MHCKQIF 381

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVSRA 245
           P + T+NS+I    K+   G+  Y  + +  M      P+ ITY  ++       +V +A
Sbjct: 382 PDVVTYNSLIDGLCKS---GRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKA 438

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            E+  +L        V T N ++   C +G   +A  +FE+    G   D  TY  + K 
Sbjct: 439 IELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKG 498

Query: 306 YTK 308
           + K
Sbjct: 499 FCK 501



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 5/128 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI  + K G+   A+ L  EM + G  P+   YN+L+ A      K   + KA
Sbjct: 383 DVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDA----LCKNHHVDKA 438

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +    K+K     +P++ TYNIL+    ++  +     +F+++  +    D+YTYN ++ 
Sbjct: 439 IELLTKLKD-HNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIK 497

Query: 130 AYGKNGMI 137
            + K G +
Sbjct: 498 GFCKKGFV 505


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 151/343 (44%), Gaps = 21/343 (6%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++ ++ DT  YSK+I  +    +   A  LF EM+  G  PD   Y  LI +      KA
Sbjct: 216 RKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFC----KA 271

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             + +A   F++M+ +  C P +VTY  L+ A  +A+ V Q N +F  + ++   P+  T
Sbjct: 272 GLIEQAQWLFEEMRSV-GCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVT 330

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQ----------CK------PDIITFNLLIDSYG 167
           Y  ++D   K G I +   V +++              C+      P+++T+  L+D   
Sbjct: 331 YGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLC 390

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
           K    D   ++  +++ S  +P    ++++I  + KA     A+ VF +MT   Y PS  
Sbjct: 391 KAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVH 450

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           TY  +I        +  A ++  ++ K      V T  AM++  C  G   +A  L    
Sbjct: 451 TYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLM 510

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              G +P+  TY  L     KA   +L   L  +M + G  PN
Sbjct: 511 EEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPN 553



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 154/358 (43%), Gaps = 27/358 (7%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI    K G    A WLF EMR+ GC P    Y ALI A+L    KAK + +A
Sbjct: 257 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYL----KAKQVPQA 312

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL----------------H 113
              F +M     C+PN VTY  L+    +A N+ +   ++ +L                 
Sbjct: 313 NDIFHRMVD-AGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCED 371

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
              LAP++ TY  ++D   K   +     +L  M S+ C+P+ I ++ LID + K    D
Sbjct: 372 RHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKID 431

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
             ++VF  +      P++ T+ S+I    K      A  V  +M     TP+ +TY  +I
Sbjct: 432 SAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMI 491

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL---LFENSHNM 290
                     +A ++   + + G    V T  A+++     G   + DL   LF      
Sbjct: 492 DGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGL---GKAGKIDLSLDLFTQMSRK 548

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 348
           G +P+  TY++L      A + +  + LL  M+Q       + +  A++ FS S   S
Sbjct: 549 GCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIAS 606



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 121/276 (43%), Gaps = 18/276 (6%)

Query: 73  FQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           FQ +K M R    P+  TY+ ++     A  V++   LF+E+    + PD+YTY  ++D+
Sbjct: 208 FQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDS 267

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K G+I++ + +   M+S  C P ++T+  LI +Y K +   +   +F  ++ +  +P 
Sbjct: 268 FCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPN 327

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMK----------------YTPSFITYECIIT 234
             T+ +++    KA    KA  V+ K+                      P+ +TY  ++ 
Sbjct: 328 DVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVD 387

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
                  V  A E+ D +   G +      +A+++ +C  G    A  +F      G  P
Sbjct: 388 GLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLP 447

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              TY  L     K    +L  K+L +M ++   PN
Sbjct: 448 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 483



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/380 (21%), Positives = 152/380 (40%), Gaps = 69/380 (18%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I +   Y  L++   KK Q      + + M   GC P+PS++N+L+ ++ + +D A A  
Sbjct: 74  IPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYA-- 131

Query: 68  KALGYFQKMKGMER--CKPNIVTYNILLRA-CAQAR------------------------ 100
                ++ +  M    C P  V YNI + + C Q +                        
Sbjct: 132 -----YKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVL 186

Query: 101 ---NV-------------DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
              NV             D+   L KE+      PD  TY+ V+        +++   + 
Sbjct: 187 NKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLF 246

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             MK     PD+ T+ +LIDS+ K    ++ + +F+ +      PT+ T+ ++I  Y KA
Sbjct: 247 QEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKA 306

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
           +   +A  +F +M      P+ +TY  ++       N+S+A E++ +L        + T 
Sbjct: 307 KQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL--------IGTS 358

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           ++            ++D  F       + P+  TY  L     KA+  +   +LL  M  
Sbjct: 359 DS-----------ADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLS 407

Query: 325 NGIVPNKRFFLEALETFSSS 344
           +G  PN   +   ++ F  +
Sbjct: 408 SGCEPNHIVYDALIDGFCKA 427



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 123/297 (41%), Gaps = 13/297 (4%)

Query: 43  RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
           R D  +   L T  +    +A    +A+ +  +M+    C PN+VTY  LL    + + +
Sbjct: 35  REDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMR-CNSCIPNVVTYRTLLSGFLKKKQL 93

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
                +   +      P+   +N ++ +Y           +L+RM +  C P  + +N+ 
Sbjct: 94  GWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIF 153

Query: 163 IDSYGKRQA------FDKMEQVFKSLMHSK---EKPTLPTFNSMIINYGKARLQGKAEYV 213
           I S   ++        D  E+++  ++ +     K  +  F   +   GK     KA  +
Sbjct: 154 IGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFD---KAFQL 210

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
            ++M    + P   TY  +IT   +   V +A  +F E+  +G    V T   +++++C 
Sbjct: 211 IKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCK 270

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            GL  +A  LFE   ++G +P   TY  L  AY KA        +  RM   G  PN
Sbjct: 271 AGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPN 327



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 111/269 (41%), Gaps = 15/269 (5%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y+     Y+ LI  M K G+  LAM + S+M    C P+   Y A+I       +  KAL
Sbjct: 445 YLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKAL 504

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            K L   ++ KG   C PN+VTY  L+    +A  +D    LF ++     +P+  TY  
Sbjct: 505 -KLLSLMEE-KG---CSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRV 559

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++     G++ +   +L  MK       +  +   I  + K  +F     + + +    
Sbjct: 560 LINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSK--SFIASLGILEEMESYG 617

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI-----TYECIITMYGYCDN 241
             P  P +  +I  + KA   G+ E   +    M   PS +      Y  +I        
Sbjct: 618 TVPIAPVYGMLIDCFSKA---GRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQ 674

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEA 270
           V  A  ++ E+++ G   ++S    +++ 
Sbjct: 675 VEEAFRLYSEMTRRGFVPELSVFVCLIKG 703



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 113/276 (40%), Gaps = 45/276 (16%)

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
           C + R  D ++ + +E  +       +  +G+M+A        E  S L RM+ N C P+
Sbjct: 21  CKEGRWADALDMIEREDFKLDTVLCTHMISGLMEA----SYFDEAMSFLHRMRCNSCIPN 76

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
           ++T+  L+  + K++     +++   +M     P    FNS++ +Y   +    A  +  
Sbjct: 77  VVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLN 136

Query: 216 KMTAMKYTPSFITYECIIT-------------------MYGY-----C----DNVSR-AR 246
           +MT     P ++ Y   I                    +YG      C     NV+  AR
Sbjct: 137 RMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFAR 196

Query: 247 EI-----FDELSKLGKDM-------KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
            +     FD+  +L K+M         ST + ++   C      +A LLF+    +GVTP
Sbjct: 197 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 256

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           D  TY +L  ++ KA + E  Q L + M   G  P 
Sbjct: 257 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPT 292


>gi|6633861|gb|AAF19720.1|AC008047_27 F2K11.2 [Arabidopsis thaliana]
          Length = 332

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 143/311 (45%), Gaps = 7/311 (2%)

Query: 37  MRNSGCRPDPSVYNALITAHLHTRDKAKALAKA-----LGYFQKMKGMERCKPNIV-TYN 90
           M  +GCRP+   +N L+ +        +ALA        G+     G    K ++V +  
Sbjct: 1   MVETGCRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTA 60

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
           I+ R C    +++  N LF E+HE  + P++ TYN ++D++  +G   + + +L  M   
Sbjct: 61  IVDRLCKDGNHINAQN-LFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEK 119

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
           Q  PDI+TF+ LI+++ K +   + E+++K ++     PT  T+NSMI  + K      A
Sbjct: 120 QINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDA 179

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
           + +   M +   +P  +T+  +I  Y     V    EIF E+ + G      T   ++  
Sbjct: 180 KRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHG 239

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +C  G    A  L     + GV PD  T+  +               +L+ ++++ + P 
Sbjct: 240 FCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAILEDLQKSEVCPR 299

Query: 331 KRFFLEALETF 341
             FFL +L +F
Sbjct: 300 LIFFLFSLCSF 310



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 119/250 (47%), Gaps = 13/250 (5%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD  I + ++  + K G    A  LF+EM   G  P+   YN +I +  H+   + A   
Sbjct: 53  ADVVISTAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDA--- 109

Query: 69  ALGYFQKMKGM--ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
                Q ++ M  ++  P+IVT++ L+ A  + R V +   ++KE+    + P   TYN 
Sbjct: 110 ----DQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNS 165

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++D + K   + + + +L  M S  C PD++TF+ LI+ Y K +  D   ++F  +    
Sbjct: 166 MIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRG 225

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSR 244
                 T+ ++I  + +      A+ +  +M +    P +IT+ C++   G C    + +
Sbjct: 226 IVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLA--GLCSKKELRK 283

Query: 245 AREIFDELSK 254
           A  I ++L K
Sbjct: 284 AFAILEDLQK 293


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 149/322 (46%), Gaps = 15/322 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G +R A+ L   M    C P+   YN +I        K + + +AL  F
Sbjct: 182 YGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLF----KDRQVNEALNIF 237

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  KG+    PN+ TYN ++    +      V  L  E+ +S + P++  +  ++DA 
Sbjct: 238 SEMIAKGI---SPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDAL 294

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K GM+     V+  M     +PD++T+  L+D +  R   D+ ++VF +++     P +
Sbjct: 295 CKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNV 354

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE---I 248
            +++++I  Y K +   KA Y+F++M   +  P+ +TY  +I  +G C +V R R+   +
Sbjct: 355 ISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLI--HGLC-HVGRLRDAIAL 411

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F E+   G+   + T   +L+  C      +A  + +      + PD  +Y ++     +
Sbjct: 412 FHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCR 471

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
               E    L   +   G+ P+
Sbjct: 472 VGELEAAGDLFSSLSSKGLHPD 493



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 143/321 (44%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  ++ LI  +  +G+   A+ LF +M   G +P+   Y  LI       +   A+   
Sbjct: 143 DTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLL 202

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               QK      C+PN++TYN ++    + R V++   +F E+    ++P++ TYN ++ 
Sbjct: 203 RSMVQK-----NCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIH 257

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K    K + ++++ M  ++  P+++ F  L+D+  K         V   ++    +P
Sbjct: 258 GLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEP 317

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ +++  +       +A+ VF  M      P+ I+Y  +I  Y     + +A  +F
Sbjct: 318 DVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLF 377

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +E+ +      + T N ++   C  G   +A  LF      G  PD  TY++L     K 
Sbjct: 378 EEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKT 437

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +    +LK +E + + P+
Sbjct: 438 RHLDQAMAMLKAIEGSNLAPD 458



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 118/273 (43%), Gaps = 5/273 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR    D   Y+ L+     + +   A  +F  M   GC P+   Y+ LI  +     K 
Sbjct: 312 QRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYC----KI 367

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           + + KA+  F++M   E   PNIVTYN L+        +    ALF E+  S   PD+ T
Sbjct: 368 QRIDKAMYLFEEMCQRELV-PNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVT 426

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++D   K   + +  ++L  ++ +   PDI ++N++ID   +    +    +F SL 
Sbjct: 427 YRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLS 486

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                P + T+  MI       L  +A  +F++M     +P   TY  I   +   +   
Sbjct: 487 SKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETL 546

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
            A ++  E+   G     ST+  ++E    +GL
Sbjct: 547 SAIQLLQEMLGRGFSADASTITLIVEMLSDDGL 579



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 109/265 (41%), Gaps = 1/265 (0%)

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           + +AL  F +M  M+   P++V +  +L + A  ++   V +L K++    +  D+YT  
Sbjct: 55  IDEALSSFNRMLHMQP-PPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLA 113

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            V++++     +    SVL+++     +PD  TF  LI          +   +F  ++  
Sbjct: 114 IVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGE 173

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
             +P   T+ ++I    K      A  + + M      P+ ITY  II        V+ A
Sbjct: 174 GFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEA 233

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             IF E+   G    VST N+++   C          L     +  + P+   +  L  A
Sbjct: 234 LNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDA 293

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
             K  M  +   ++  M Q G+ P+
Sbjct: 294 LCKEGMVTIAHDVVDVMIQRGVEPD 318



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 72/197 (36%), Gaps = 13/197 (6%)

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
            D+    F  ++H +  P++  F  ++ +    +       + ++M ++       T   
Sbjct: 55  IDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAI 114

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           +I  + + + V     +  ++ KLG     +T   ++   C+ G   EA  LF+     G
Sbjct: 115 VINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEG 174

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN-------------KRFFLEAL 338
             P+  TY  L     K        +LL+ M Q    PN              R   EAL
Sbjct: 175 FQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEAL 234

Query: 339 ETFSSSLAGSQSGSAKT 355
             FS  +A   S +  T
Sbjct: 235 NIFSEMIAKGISPNVST 251



 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 5/135 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I  M + G+   A  LFS + + G  PD   Y  +I            LA+A
Sbjct: 458 DIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLC----LQGLLAEA 513

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F++M   + C P+  TYN++ R   +         L +E+     + D  T   +++
Sbjct: 514 TKLFREMN-TDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVE 572

Query: 130 AYGKNGMIKEMESVL 144
               +G+ + ++ +L
Sbjct: 573 MLSDDGLDQSVKQIL 587


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 148/339 (43%), Gaps = 6/339 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI    K G    AM +   M    C P+   Y++L    LH   KA  L +A
Sbjct: 183 DVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSL----LHGLCKAGDLDQA 238

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  F++M   + C PN+VTY  L+     A  VD    L  E+  +   PD  +YN ++D
Sbjct: 239 LDLFRRMTS-KGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLD 297

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-K 188
            Y + G I+E + +   M +  C PD IT+  L+  +      ++   + +++  +    
Sbjct: 298 GYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGID 357

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P + T++ ++  Y +A+   +A    Q+M A    P+ +TY  +I        V  A E+
Sbjct: 358 PDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEV 417

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
              +     +  V T N+++ A C  G   EA  L       G+ P   TY  L + +++
Sbjct: 418 LKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSR 477

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
               E+  +L + M +     +    L   + FS+ + G
Sbjct: 478 TGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRG 516



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 166/374 (44%), Gaps = 54/374 (14%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ +I    K  Q + A+  F +MR     P+   YN ++        KA+  +KA    
Sbjct: 10  WTIIIDGFCKANQLKQALACFEKMREF-VAPNERTYNVVVNGLC----KARLTSKAYEVL 64

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL-HESILAPDIYTYNGVMDAYG 132
           ++M+  +   P++VTY+ ++    +   +D+   + +E+     +APD+ TY  V+D   
Sbjct: 65  KEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLC 124

Query: 133 KNG-------MIKEMES--------VLSRMKSNQC---------------------KPDI 156
           ++G       M++EM+           S + +  C                     KPD+
Sbjct: 125 RDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDV 184

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           +T+  LID + K    +K  ++   +   K  P + T++S++    KA    +A  +F++
Sbjct: 185 VTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRR 244

Query: 217 MTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           MT+    P+ +TY  +I  +G C    V  AR + DE++         + NA+L+ YC  
Sbjct: 245 MTSKGCVPNVVTYTTLI--HGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRL 302

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME-QNGIVPNKRF 333
           G   EA  LF+        PD  TY  L + +  A+  E  + LL+ M+   GI P+   
Sbjct: 303 GRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPD--- 359

Query: 334 FLEALETFSSSLAG 347
               + T+S  +AG
Sbjct: 360 ----VVTYSIVVAG 369



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 122/259 (47%), Gaps = 18/259 (6%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C+P +VT+ I++    +A  + Q  A F+++ E  +AP+  TYN V++   K  +  +  
Sbjct: 3   CQPTVVTWTIIIDGFCKANQLKQALACFEKMRE-FVAPNERTYNVVVNGLCKARLTSKAY 61

Query: 142 SVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM-HSKEKPTLPTFNSMII 199
            VL  M+  +   PD++T++ +I+ + K+   D+  ++ + ++      P + T+ S++ 
Sbjct: 62  EVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVD 121

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
              +     +A  + ++M      P   T+  +IT  G+C+    AR++ DE  KL K++
Sbjct: 122 GLCRDGKMDRACEMVREMKLKGVEPDKFTFSALIT--GWCN----ARKV-DEALKLYKEI 174

Query: 260 --------KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
                    V T  A+++ +C +G   +A  +          P+  TY  L     KA  
Sbjct: 175 LTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGD 234

Query: 312 KELVQKLLKRMEQNGIVPN 330
            +    L +RM   G VPN
Sbjct: 235 LDQALDLFRRMTSKGCVPN 253



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 7/176 (3%)

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
           +C+P ++T+ ++ID + K     +    F+  M     P   T+N ++    KARL  KA
Sbjct: 2   ECQPTVVTWTIIIDGFCKANQLKQALACFEK-MREFVAPNERTYNVVVNGLCKARLTSKA 60

Query: 211 EYVFQKMTAMK-YTPSFITYECIITMYGYC--DNVSRAREIFDEL-SKLGKDMKVSTLNA 266
             V ++M   K   P  +TY  +I   G+C    + RA EI  E+ ++ G    V T  +
Sbjct: 61  YEVLKEMRDGKSVAPDLVTYSTVIN--GFCKQGEMDRACEILREMVTRDGIAPDVVTYTS 118

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           +++  C +G    A  +       GV PD  T+  L   +  A   +   KL K +
Sbjct: 119 VVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEI 174


>gi|15223266|ref|NP_172337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75262899|sp|Q9FRS4.1|PPR22_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08610
 gi|9802579|gb|AAF99781.1|AC003981_31 F22O13.9 [Arabidopsis thaliana]
 gi|332190196|gb|AEE28317.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 152/323 (47%), Gaps = 13/323 (4%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + DT  Y+ +I  + KKG  R A+ L  +M  SG  PD   YN +I       +  +A+ 
Sbjct: 171 VPDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPDVITYNTVIRCMFDYGNAEQAIR 230

Query: 68  KALGYFQKMKGMERCKPNIVTYNILL----RACAQARNVDQVNALFKELHESILAPDIYT 123
                F K +    C P ++TY +L+    R C  AR ++    + +++      PDI T
Sbjct: 231 -----FWKDQLQNGCPPFMITYTVLVELVCRYCGSARAIE----VLEDMAVEGCYPDIVT 281

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN +++   + G ++E+ SV+  + S+  + + +T+N L+ S    + +D++E++   + 
Sbjct: 282 YNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCSHEYWDEVEEILNIMY 341

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
            +   PT+ T+N +I    KARL  +A   F +M   K  P  +TY  ++        V 
Sbjct: 342 QTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMSKEGMVD 401

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A E+   L        + T N++++     GL  +A  L+    + G+ PD  T + L 
Sbjct: 402 DAIELLGLLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPDDITRRSLI 461

Query: 304 KAYTKANMKELVQKLLKRMEQNG 326
             + +AN+ E   ++LK     G
Sbjct: 462 YGFCRANLVEEAGQVLKETSNRG 484



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 133/300 (44%), Gaps = 9/300 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+ ++ +   +  A+ +  +M   GC PD   YN+L+  +   R   + +A  + + 
Sbjct: 247 YTVLVELVCRYCGSARAIEVLEDMAVEGCYPDIVTYNSLVNYNCR-RGNLEEVASVIQHI 305

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
               G+E    N VTYN LL +       D+V  +   ++++   P + TYN +++   K
Sbjct: 306 LS-HGLEL---NTVTYNTLLHSLCSHEYWDEVEEILNIMYQTSYCPTVITYNILINGLCK 361

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
             ++        +M   +C PDI+T+N ++ +  K    D   ++   L ++   P L T
Sbjct: 362 ARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMSKEGMVDDAIELLGLLKNTCCPPGLIT 421

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDE 251
           +NS+I    K  L  KA  ++ +M      P  IT   +I  YG+C  + V  A ++  E
Sbjct: 422 YNSVIDGLAKKGLMKKALELYHQMLDAGIFPDDITRRSLI--YGFCRANLVEEAGQVLKE 479

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
            S  G  ++ ST   +++  C       A  + E     G  PD + Y  + K   +  M
Sbjct: 480 TSNRGNGIRGSTYRLVIQGLCKKKEIEMAIEVVEIMLTGGCKPDETIYTAIVKGVEEMGM 539



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/247 (18%), Positives = 97/247 (39%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+  + + L+R  A+   +D+   + + +  S   PD  TYN ++    K G I+    +
Sbjct: 137 PHFPSCSNLVRGLARIDQLDKAMCILRVMVMSGGVPDTITYNMIIGNLCKKGHIRTALVL 196

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L  M  +   PD+IT+N +I         ++  + +K  + +   P + T+  ++    +
Sbjct: 197 LEDMSLSGSPPDVITYNTVIRCMFDYGNAEQAIRFWKDQLQNGCPPFMITYTVLVELVCR 256

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
                +A  V + M      P  +TY  ++       N+     +   +   G ++   T
Sbjct: 257 YCGSARAIEVLEDMAVEGCYPDIVTYNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVT 316

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N +L + C +    E + +    +     P   TY +L     KA +         +M 
Sbjct: 317 YNTLLHSLCSHEYWDEVEEILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQML 376

Query: 324 QNGIVPN 330
           +   +P+
Sbjct: 377 EQKCLPD 383



 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 9/150 (6%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ ++  M K+G    A+ L   ++N+ C P    YN++I        K   + 
Sbjct: 381 LPDIVTYNTVLGAMSKEGMVDDAIELLGLLKNTCCPPGLITYNSVIDG----LAKKGLMK 436

Query: 68  KALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           KAL  + +M   G+    P+ +T   L+    +A  V++   + KE           TY 
Sbjct: 437 KALELYHQMLDAGI---FPDDITRRSLIYGFCRANLVEEAGQVLKETSNRGNGIRGSTYR 493

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
            V+    K   I+    V+  M +  CKPD
Sbjct: 494 LVIQGLCKKKEIEMAIEVVEIMLTGGCKPD 523



 Score = 39.3 bits (90), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 86/225 (38%), Gaps = 2/225 (0%)

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D  T N ++     NG + +   ++  M  +   P   + + L+    +    DK   + 
Sbjct: 103 DEETNNEILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLDKAMCIL 162

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII-TMYGY 238
           + ++ S   P   T+N +I N  K      A  + + M+     P  ITY  +I  M+ Y
Sbjct: 163 RVMVMSGGVPDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPDVITYNTVIRCMFDY 222

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             N  +A   + +  + G    + T   ++E  C       A  + E+    G  PD  T
Sbjct: 223 -GNAEQAIRFWKDQLQNGCPPFMITYTVLVELVCRYCGSARAIEVLEDMAVEGCYPDIVT 281

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
           Y  L     +    E V  +++ +  +G+  N   +   L +  S
Sbjct: 282 YNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCS 326


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 156/358 (43%), Gaps = 44/358 (12%)

Query: 10   DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
            D   Y  ++  + K+G T LA  L ++M      P   +YN +I        K K +  A
Sbjct: 834  DLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC----KYKHMDDA 889

Query: 70   LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            L  F++M  KG+   +PN+VTY+ L+            + L  ++ E  + PD++T++ +
Sbjct: 890  LNLFKEMETKGI---RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSAL 946

Query: 128  MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
            +DA+ K G + E E +   M      P I+T++ LI+ +      D+ +Q+F+ ++    
Sbjct: 947  IDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 1006

Query: 188  KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
             P + T+N++I  + K +   +   VF++M+      + +TY  +I       +   A+E
Sbjct: 1007 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 1066

Query: 248  IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE---------------------- 285
            IF E+   G    + T N +L+  C NG   +A ++FE                      
Sbjct: 1067 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 1126

Query: 286  -------------NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                         N    GV PD   Y  +   + +   KE    L K M+++G +PN
Sbjct: 1127 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 1184



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 155/344 (45%), Gaps = 15/344 (4%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR---DKA 63
           Y  D   Y+ +I  + K  +   A   F E+   G RP+   Y AL+    ++    D A
Sbjct: 289 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAA 348

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           + L+  +         ++  PN++TY+ LL A  +   V +   LF+E+    + PDI T
Sbjct: 349 RLLSDMIK--------KKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVT 400

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ +++    +  I E   +   M S  C  D++++N LI+ + K +  +   ++F+ + 
Sbjct: 401 YSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMS 460

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN-- 241
                    T+N++I  + +A    KA+  F +M     +P   TY   I + G CDN  
Sbjct: 461 QRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN--ILLGGLCDNGE 518

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           + +A  IF+++ K   D+ + T   ++   C  G   EA  LF +    G+ PD  TY  
Sbjct: 519 LEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTT 578

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 345
           +        +   V+ L  +M+Q G++ N     +   T S+ L
Sbjct: 579 MMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAEL 622



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 148/326 (45%), Gaps = 9/326 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D      L+    ++ +   A+ L  +M   G +PD   YNA+I +      K K +
Sbjct: 254 YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLC----KTKRV 309

Query: 67  AKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
             A  +F+++  KG+   +PN+VTY  L+     +        L  ++ +  + P++ TY
Sbjct: 310 NDAFDFFKEIERKGI---RPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITY 366

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           + ++DA+ KNG + E + +   M      PDI+T++ LI+        D+  Q+F  ++ 
Sbjct: 367 SALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVS 426

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
                 + ++N++I  + KA+       +F++M+      + +TY  +I  +    +V +
Sbjct: 427 KGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDK 486

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A+E F ++   G    + T N +L   C NG   +A ++FE+     +  D  TY  + +
Sbjct: 487 AQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIR 546

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
              K    E    L   +   G+ P+
Sbjct: 547 GMCKTGKVEEAWSLFCSLSLKGLKPD 572



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 136/313 (43%), Gaps = 5/313 (1%)

Query: 14   YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
            YS LI+ +   G+   A  L S+M      PD   ++ALI A +    K   L +A   +
Sbjct: 908  YSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFV----KEGKLVEAEKLY 963

Query: 74   QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             +M       P+IVTY+ L+        +D+   +F+ +      PD+ TYN ++  + K
Sbjct: 964  DEMVK-RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCK 1022

Query: 134  NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
               ++E   V   M       + +T+N+LI    +    D  +++FK ++     P + T
Sbjct: 1023 YKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMT 1082

Query: 194  FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            +N+++    K     KA  VF+ +   K  P+  TY  +I        V    ++F  LS
Sbjct: 1083 YNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLS 1142

Query: 254  KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
              G    V   N M+  +C  G   EAD LF+     G  P+S  Y  L +A  +   +E
Sbjct: 1143 LKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDRE 1202

Query: 314  LVQKLLKRMEQNG 326
               +L+K M   G
Sbjct: 1203 ASAELIKEMRSCG 1215



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 153/352 (43%), Gaps = 40/352 (11%)

Query: 14   YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
            +SKL++ + K  +  + + L  +M+N G   +   Y+ LI           ALA  LG  
Sbjct: 698  FSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALA-VLGKM 756

Query: 74   QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             K+ G E   PNIVT + LL     ++ + +  AL  ++  +   P+  T+N ++     
Sbjct: 757  MKL-GYE---PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 812

Query: 134  NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            +    E  +++ RM +  C+PD++T+ ++++   KR   D    +   +   K +P +  
Sbjct: 813  HNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLI 872

Query: 194  FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM---YGYCDNVSR------ 244
            +N++I    K +    A  +F++M      P+ +TY  +I+    YG   + SR      
Sbjct: 873  YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 932

Query: 245  --------------------------AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
                                      A +++DE+ K   D  + T ++++  +CM+    
Sbjct: 933  ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 992

Query: 279  EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            EA  +FE   +    PD  TY  L K + K    E   ++ + M Q G+V N
Sbjct: 993  EAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 1044



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 144/303 (47%), Gaps = 9/303 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSV--YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 87
           A+ LFS+M  S  RP PS+  +N L++A +    K   +  +LG   ++ G+   + ++ 
Sbjct: 172 AIDLFSDMVKS--RPFPSIVDFNRLLSAIVKL--KKYDVVISLGKKMEVLGI---RNDLY 224

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           T+NI++        V    ++  ++ +    PD  T   +++ + +   + +  S++ +M
Sbjct: 225 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 284

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
                KPDI+ +N +IDS  K +  +     FK +     +P + T+ +++     +   
Sbjct: 285 VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRW 344

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
             A  +   M   K TP+ ITY  ++  +     V  A+E+F+E+ ++  D  + T +++
Sbjct: 345 SDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSL 404

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +   C++    EA+ +F+   + G   D  +Y  L   + KA   E   KL + M Q G+
Sbjct: 405 INGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGL 464

Query: 328 VPN 330
           V N
Sbjct: 465 VSN 467



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/379 (21%), Positives = 147/379 (38%), Gaps = 57/379 (15%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR  +++T  Y+ LI    + G    A   FS+M   G  PD   YN L+       +  
Sbjct: 461 QRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGE-- 518

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L KAL  F+ M+  E    +IVTY  ++R   +   V++  +LF  L    L PDI T
Sbjct: 519 --LEKALVIFEDMQKREM-DLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVT 575

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKS-----NQCKPDIITFNL----------------- 161
           Y  +M      G++ E+E++ ++MK      N C        L                 
Sbjct: 576 YTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSL 635

Query: 162 --------------LIDSYGKRQAFDKMEQ----------------VFKSLMHSKEKPTL 191
                         L+ ++  + ++D  E+                +F  ++ S+  P++
Sbjct: 636 LKDIKSGVCKKALSLLRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSI 695

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             F+ ++    K         + ++M  +    +  TY  +I  +     +  A  +  +
Sbjct: 696 IEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGK 755

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + KLG +  + TL+++L  YC +   +EA  L +     G  P++ T+  L       N 
Sbjct: 756 MMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNK 815

Query: 312 KELVQKLLKRMEQNGIVPN 330
                 L+ RM   G  P+
Sbjct: 816 ASEAMALIDRMVAKGCQPD 834



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 8/198 (4%)

Query: 4    QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            QR  + +T  Y+ LI  + + G   +A  +F EM + G  P+   YN L+          
Sbjct: 1038 QRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLE 1097

Query: 64   KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            KA+     Y Q+ K ME   P I TYNI++    +A  V+    LF  L    + PD+  
Sbjct: 1098 KAMV-VFEYLQRSK-ME---PTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVA 1152

Query: 124  YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY---GKRQAFDKMEQVFK 180
            YN ++  + + G  +E +++   MK +   P+   +N LI +    G R+A  ++ +  +
Sbjct: 1153 YNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMR 1212

Query: 181  SLMHSKEKPTLPTFNSMI 198
            S   + +  T+    +M+
Sbjct: 1213 SCGFAGDASTIGLVTNML 1230



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 118/278 (42%), Gaps = 5/278 (1%)

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L  A+  F +M    R  P+I+ ++ LL A A+    D V +L +++    +  + YTY+
Sbjct: 676 LDDAVALFGEMVK-SRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 734

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++ + +   +    +VL +M     +P+I+T + L++ Y   +   +   +   +  +
Sbjct: 735 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 794

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVS 243
             +P   TFN++I          +A  +  +M A    P  +TY  ++   G C   +  
Sbjct: 795 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVN--GLCKRGDTD 852

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  + +++ +   +  V   N +++  C      +A  LF+     G+ P+  TY  L 
Sbjct: 853 LAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLI 912

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
                        +LL  M +  I P+   F   ++ F
Sbjct: 913 SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAF 950



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/382 (21%), Positives = 146/382 (38%), Gaps = 58/382 (15%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA----- 55
           MQK+   + D   Y+ +I  M K G+   A  LF  +   G +PD   Y  +++      
Sbjct: 529 MQKREMDL-DIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKG 587

Query: 56  ------HLHTRDKAKALAK---------------------ALGYFQKMKGMERCKPNIVT 88
                  L+T+ K + L K                     + GY   +  ++  K  +  
Sbjct: 588 LLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSL--LKDIKSGVCK 645

Query: 89  YNI-LLRACAQ----------ARN------VDQVNALFKELHESILAPDIYTYNGVMDAY 131
             + LLRA +           +RN      +D   ALF E+ +S   P I  ++ ++ A 
Sbjct: 646 KALSLLRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAI 705

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K      + S+  +M++     +  T+++LI+ + +R        V   +M    +P +
Sbjct: 706 AKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNI 765

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T +S++  Y  ++   +A  +  +M    Y P+ +T+  +I      +  S A  + D 
Sbjct: 766 VTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDR 825

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE--NSHNMG-VTPDSSTYKLLYKAYTK 308
           +   G    + T   ++   C  G   + DL F   N    G + P    Y  +     K
Sbjct: 826 MVAKGCQPDLVTYGVVVNGLCKRG---DTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 882

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
               +    L K ME  GI PN
Sbjct: 883 YKHMDDALNLFKEMETKGIRPN 904



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 87/201 (43%), Gaps = 4/201 (1%)

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           + S M  ++  P I+ FN L+ +  K + +D +  + K +     +  L TFN +I  + 
Sbjct: 175 LFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFC 234

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMK 260
                  A  +  KM  + Y P  +T   ++   G+C  + VS A  + D++ ++G    
Sbjct: 235 CCFQVSLALSILGKMLKLGYEPDRVTIGSLVN--GFCRRNRVSDAVSLVDKMVEIGYKPD 292

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           +   NA++++ C      +A   F+     G+ P+  TY  L      ++      +LL 
Sbjct: 293 IVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLS 352

Query: 321 RMEQNGIVPNKRFFLEALETF 341
            M +  I PN   +   L+ F
Sbjct: 353 DMIKKKITPNVITYSALLDAF 373



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 7/186 (3%)

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
            +F  ++ S+  P++  FN ++    K +       + +KM  +       T+  +I  +
Sbjct: 174 DLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCF 233

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
             C  VS A  I  ++ KLG +    T+ +++  +C     ++A  L +    +G  PD 
Sbjct: 234 CCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDI 293

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTD 356
             Y  +  +  K           K +E+ GI PN       + T+++ + G  + S  +D
Sbjct: 294 VAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPN-------VVTYTALVNGLCNSSRWSD 346

Query: 357 LTRSLS 362
             R LS
Sbjct: 347 AARLLS 352


>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
 gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
          Length = 786

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 145/316 (45%), Gaps = 5/316 (1%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S +IA   + G    A+  F +++  G  P    YNAL    L    KA    +AL   +
Sbjct: 248 STVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNAL----LQVFGKAGNYTEALRVLK 303

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M+  + C+P+ VTYN L    A+A   ++       +    L P+ +TYN VM AYG  
Sbjct: 304 EME-QDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNI 362

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G + E  ++  +MK + C P++ T+N ++   GK+  F  M ++   +  S   P   T+
Sbjct: 363 GKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTW 422

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N+M+   GK  ++     V + M +     S  TY  +I  YG C + + A ++++E++ 
Sbjct: 423 NTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTS 482

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
            G    ++T NA+L      G  + A  +       G  P+  +Y LL + Y K      
Sbjct: 483 AGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAG 542

Query: 315 VQKLLKRMEQNGIVPN 330
           +  + K +    + P+
Sbjct: 543 IDAIEKEVYGGTVFPS 558



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 152/351 (43%), Gaps = 40/351 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ ++   G  G+   A+ LF +M+ SGC P+ + YN  I   L  + +   + + LG  
Sbjct: 352 YNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYN-FILGMLGKKSRFTVMLEMLGEM 410

Query: 74  QKMKGMERCKPNIVTYNILLRAC---------------------------------AQAR 100
            +      C PN VT+N +L  C                                 A  R
Sbjct: 411 SR----SGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGR 466

Query: 101 NVDQVNA--LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
              + NA  ++ E+  +  AP + TYN +++   + G     +S++S+M++   KP+  +
Sbjct: 467 CGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQS 526

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           ++LL+  Y K      ++ + K +      P+     +++I   K R  G  E  FQ++ 
Sbjct: 527 YSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWVILRTLVIANFKCRRLGGIEKAFQEVK 586

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           A  Y P  + +  +++MY      S+  EIFD + + G    + T N++++ Y       
Sbjct: 587 ARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESW 646

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           EA+ +     +  V PD  +Y  +   + K  + +  Q++L  M  +G+ P
Sbjct: 647 EAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAP 697



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 140/322 (43%), Gaps = 8/322 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++  + + G+   A+ LF+E+R  G  P    YN ++  +       ++  + 
Sbjct: 172 DVRAYTTVLHALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRM---GRSWPRI 228

Query: 70  LGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +    +M+  G+E   P+  T + ++ AC +   VD+  A F++L      P + TYN +
Sbjct: 229 VALLDEMRAAGVE---PDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNAL 285

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  +GK G   E   VL  M+ + C+PD +T+N L  +Y +   +++  +   ++     
Sbjct: 286 LQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGL 345

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P   T+N+++  YG      +A  +F +M      P+  TY  I+ M G     +   E
Sbjct: 346 LPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLE 405

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +  E+S+ G      T N ML      G+      + E   + GV     TY  L  AY 
Sbjct: 406 MLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYG 465

Query: 308 KANMKELVQKLLKRMEQNGIVP 329
           +   +    K+   M   G  P
Sbjct: 466 RCGSRTNAFKMYNEMTSAGFAP 487



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 148/340 (43%), Gaps = 5/340 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K R +      Y+ L+ V GK G    A+ +  EM   GC+PD   YN L   +      
Sbjct: 271 KARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFY 330

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +A AK L      KG+    PN  TYN ++ A      VD+  ALF ++ +S   P++ 
Sbjct: 331 EEA-AKCLDTMTS-KGL---LPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVN 385

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++   GK      M  +L  M  + C P+ +T+N ++   GKR   D + +V + +
Sbjct: 386 TYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGM 445

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                + +  T+N++I  YG+   +  A  ++ +MT+  + P   TY  ++ +     + 
Sbjct: 446 KSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDW 505

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           S A+ I  ++   G      + + +L+ Y   G     D + +  +   V P     + L
Sbjct: 506 STAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWVILRTL 565

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
             A  K      ++K  + ++  G  P+   F   L  ++
Sbjct: 566 VIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYA 605



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/328 (20%), Positives = 135/328 (41%), Gaps = 5/328 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ ++AV GK+G       +   M++ G       YN LI A+     +  +   A   +
Sbjct: 422 WNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAY----GRCGSRTNAFKMY 477

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M       P + TYN LL   ++  +     ++  ++      P+  +Y+ ++  Y K
Sbjct: 478 NEMTSAG-FAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAK 536

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G I  ++++   +      P  +    L+ +  K +    +E+ F+ +      P L  
Sbjct: 537 GGNIAGIDAIEKEVYGGTVFPSWVILRTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVI 596

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           FNSM+  Y K  +  K   +F  +     +P  ITY  ++ MY  C     A +I ++L 
Sbjct: 597 FNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLK 656

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
                  V + N ++  +C  GL  EA  +       G+ P   TY  L   Y    M  
Sbjct: 657 SSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFS 716

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETF 341
             ++++  M Q+ + P +  +   ++++
Sbjct: 717 EAREVINYMIQHNLKPMELTYRRVVDSY 744



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 132/289 (45%), Gaps = 33/289 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA---------- 63
           Y+ L+ V+ ++G    A  + S+MR  G +P+   Y+ L+  +    + A          
Sbjct: 492 YNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVY 551

Query: 64  -----------KALAKALGYFQKMKGMERC---------KPNIVTYNILLRACAQARNVD 103
                      + L  A    +++ G+E+           P++V +N +L   A+     
Sbjct: 552 GGTVFPSWVILRTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNGMYS 611

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +V  +F  + +S L+PD+ TYN +MD Y K     E E +L+++KS+Q KPD++++N +I
Sbjct: 612 KVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYNTVI 671

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           + + K+    + +++   ++     P + T+++++  Y    +  +A  V   M      
Sbjct: 672 NGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFSEAREVINYMIQHNLK 731

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGK--DMKV-STLNAMLE 269
           P  +TY  ++  Y        AR    E+S+     D KV  TL A +E
Sbjct: 732 PMELTYRRVVDSYCKAKRFEEARSFLSEVSETDPNFDKKVLHTLAAYIE 780



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 113/248 (45%), Gaps = 1/248 (0%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-IKEMESV 143
           ++  Y  +L A ++A   ++   LF EL    +AP + TYN V+D YG+ G     + ++
Sbjct: 172 DVRAYTTVLHALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVAL 231

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L  M++   +PD  T + +I +  +    D+    F+ L      P + T+N+++  +GK
Sbjct: 232 LDEMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGK 291

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A    +A  V ++M      P  +TY  +   Y        A +  D ++  G      T
Sbjct: 292 AGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFT 351

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N ++ AY   G   EA  LF+     G  P+ +TY  +     K +   ++ ++L  M 
Sbjct: 352 YNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMS 411

Query: 324 QNGIVPNK 331
           ++G  PN+
Sbjct: 412 RSGCTPNR 419


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 156/336 (46%), Gaps = 9/336 (2%)

Query: 13   IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
            IY+ +I  + K      A+ +F  M   G   D   YN LI+   ++     A A+ L  
Sbjct: 722  IYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDA-ARLLRD 780

Query: 73   FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
              K K      PN++ +  L+    +  N+ +   L+KE+    + P+I TYN +++ + 
Sbjct: 781  MVKRK----IDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFC 836

Query: 133  KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
              G + + + +   M S  C PD++T+N LI  + K +  +   ++F  + H        
Sbjct: 837  IQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAF 896

Query: 193  TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFD 250
            T+N++I  Y +A     A+ VF +M      P  +TY   I +   C+N  + +A  + +
Sbjct: 897  TYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYN--ILLDCLCNNGKIEKALVMVE 954

Query: 251  ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            +L K   D+ + T N +++  C N    EA  LF +    GV  D+  Y  +     +  
Sbjct: 955  DLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNG 1014

Query: 311  MKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLA 346
            ++    KL  RM+++G +P++R + E L    +SL+
Sbjct: 1015 LRREADKLCTRMKEDGFMPSERIYDETLRDHYTSLS 1050



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 158/328 (48%), Gaps = 16/328 (4%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG-CRPDPSVYNALITAHLHTRDKAKA 65
           Y  +  +Y+ LI  + K G   +A+ L +EM   G    D   YN L+T   ++ +  +A
Sbjct: 166 YEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQA 225

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
            A+ L    K     R  P++ T+  L+ A  +  N+D+   L+K++ +S + P+  TYN
Sbjct: 226 -ARILRDMTK----RRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYN 280

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++    +G +   +     M S  C P+++T+N LI+ + K +  +   ++F+ +   
Sbjct: 281 SLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYRE 340

Query: 186 KEKPTLPTFNSMIINY---GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN- 241
                  T+N++I  Y   GK R+   A+ +F  M +   TP  IT+ CI+ ++G C N 
Sbjct: 341 GLVGDTFTYNTLIHGYCQVGKLRV---AKDIFSWMVSCGVTPDIITH-CIL-LHGLCVNG 395

Query: 242 -VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            +  A   F+++    K + +   N M+   C      EA  LF      GV PD+ TY 
Sbjct: 396 EIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYT 455

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIV 328
           ++     K   +    +L +RM+++GI+
Sbjct: 456 IMILGLCKNGPRREADELFRRMKEDGII 483



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 147/346 (42%), Gaps = 38/346 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL--- 70
           +++++  + K  +  + ++LF +M N G   D  +Y+  I  H   R    +LA AL   
Sbjct: 618 FTRVLTAIAKMNKFDIVIYLFHKMENLGISHD--LYSFTILIHCFCRCSRFSLALALLGK 675

Query: 71  ------------------GYFQKMKGMERC-----------KPNIVTYNILLRACAQARN 101
                             G+ Q  +  E             +PN+V YN ++    + R+
Sbjct: 676 MMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRD 735

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
           ++    +F  + +  +  D  TYN ++     +G   +   +L  M   +  P++I F  
Sbjct: 736 LNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTA 795

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           LID++ K     + + ++K ++     P + T+NS+I  +      G A+++F  M +  
Sbjct: 796 LIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKG 855

Query: 222 YTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
             P  +TY  +IT  G+C +  V    ++F E++  G      T N ++  YC  G    
Sbjct: 856 CFPDVVTYNTLIT--GFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNV 913

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
           A  +F    + GV PD  TY +L          E    +++ +++N
Sbjct: 914 AQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKN 959



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/318 (20%), Positives = 135/318 (42%), Gaps = 6/318 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +++L+  +    +    ++   +M   G   D   +  LI    H   +   L+ AL   
Sbjct: 68  FTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILI----HCFCRCSRLSLALSIL 123

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM  +    P+IVT+  LL        +    +L   + +S   P++  YN ++D   K
Sbjct: 124 GKMMKLGY-DPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNTLIDCLCK 182

Query: 134 NGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           NG +     +L+ M K  +   D++T+N L+        + +  ++ + +   +  P + 
Sbjct: 183 NGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVF 242

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           TF ++I  + K     +A+ ++++M      P+ +TY  +I        +  A++ FD +
Sbjct: 243 TFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLM 302

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           +  G    V T N ++  +C +    +   LF+  +  G+  D+ TY  L   Y +    
Sbjct: 303 ASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKL 362

Query: 313 ELVQKLLKRMEQNGIVPN 330
            + + +   M   G+ P+
Sbjct: 363 RVAKDIFSWMVSCGVTPD 380



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 116/296 (39%), Gaps = 13/296 (4%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH-- 58
           M+K+    AD   Y+ L+  +   G+ R A  +  +M      PD   + ALI A +   
Sbjct: 196 MEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQG 255

Query: 59  TRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
             D+A+ L K +   Q   G     PN VTYN L+        +      F  +      
Sbjct: 256 NLDEAQELYKQM--LQSSIG-----PNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCF 308

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           P++ TYN +++ + K+  +++   +  RM       D  T+N LI  Y +       + +
Sbjct: 309 PNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDI 368

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           F  ++     P + T   ++         G A   F  M + +     + Y   I ++G 
Sbjct: 369 FSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYN--IMIHGL 426

Query: 239 C--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV 292
           C  D V  A E+F  L   G      T   M+   C NG   EAD LF      G+
Sbjct: 427 CKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDGI 482



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/283 (20%), Positives = 115/283 (40%), Gaps = 36/283 (12%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P++V +  LL A A  R  + V    +++    ++ D+Y++  ++  + +   +    S+
Sbjct: 63  PSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILIHCFCRCSRLSLALSI 122

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI----- 198
           L +M      P I+TF  L+  +  R        +  S++ S  +P +  +N++I     
Sbjct: 123 LGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNTLIDCLCK 182

Query: 199 ---INYG---------KARLQG-------------------KAEYVFQKMTAMKYTPSFI 227
              +N           K RL                     +A  + + MT  +  P   
Sbjct: 183 NGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVF 242

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           T+  +I  +    N+  A+E++ ++ +        T N+++   CM+G    A   F+  
Sbjct: 243 TFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLM 302

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            + G  P+  TY  L   + K+   E   KL +RM + G+V +
Sbjct: 303 ASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGD 345



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 74/379 (19%), Positives = 142/379 (37%), Gaps = 61/379 (16%)

Query: 6   WYIADTGIYSKLIAVM------GKKGQTRLAMWLFSEMRNSGCRP-----------DPSV 48
           +Y +DT ++S L+ ++        KG  R  + L     N   R                
Sbjct: 523 YYYSDTTLWSSLVGLIPIASSSSVKGFVRRHLLLLERGNNPESRSFSGASHHHHHHHHHH 582

Query: 49  YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL 108
           Y   + + LH          A G F +M    R  P+IV +  +L A A+    D V  L
Sbjct: 583 YRERLRSELH----CIKFDDAFGLFCEML-QSRPIPSIVDFTRVLTAIAKMNKFDIVIYL 637

Query: 109 FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
           F ++    ++ D+Y++  ++  + +        ++L +M     +P I+T   L++ + +
Sbjct: 638 FHKMENLGISHDLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQ 697

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
              F +   +  S+     +P +  +N++I    K R    A  +F  M         +T
Sbjct: 698 GNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVT 757

Query: 229 YECIITMYGYCD-------------------------------------NVSRAREIFDE 251
           Y  +I+  G C+                                     N+  A+ ++ E
Sbjct: 758 YNTLIS--GLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKE 815

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + +      + T N+++  +C+ G   +A  +F+   + G  PD  TY  L   + K+  
Sbjct: 816 MIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKR 875

Query: 312 KELVQKLLKRMEQNGIVPN 330
            E   KL   M   G+V +
Sbjct: 876 VEDGMKLFCEMTHQGLVGD 894



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 77/188 (40%)

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P I+ F  ++ +  K   FD +  +F  + +      L +F  +I  + +      A  +
Sbjct: 613 PSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFCRCSRFSLALAL 672

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
             KM  + + PS +T   ++  +   +    A  + D +++LG +  V   N ++   C 
Sbjct: 673 LGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCK 732

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
           N     A  +F      G+  D+ TY  L      +       +LL+ M +  I PN  F
Sbjct: 733 NRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIF 792

Query: 334 FLEALETF 341
           F   ++TF
Sbjct: 793 FTALIDTF 800



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 62/155 (40%)

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
           F+    +F  ++ S+  P++  F  ++      R      Y  Q+M     +    ++  
Sbjct: 46  FEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTI 105

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           +I  +  C  +S A  I  ++ KLG D  + T  ++L  +C+     +A  L  +    G
Sbjct: 106 LIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSG 165

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
             P+   Y  L     K     +  +LL  ME+ G
Sbjct: 166 YEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKG 200


>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
 gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 152/316 (48%), Gaps = 5/316 (1%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S +++   ++G  R A   F+E+++ G  P    YNAL    L    KA    +AL   +
Sbjct: 285 STVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNAL----LQVFGKAGVYTEALSVLK 340

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M+    C  + VTYN L+ A  +A    +   + + + +  + P+  TY  V+DAYGK 
Sbjct: 341 EMEE-NSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKA 399

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G   E   +   MK   C P+  T+N ++   GK+   ++M ++   +  +   P   T+
Sbjct: 400 GKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATW 459

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N+M+   G   +      VF++M +  + P   T+  +I+ YG C +   A +++ E+++
Sbjct: 460 NTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTR 519

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
            G +  V+T NA+L A    G     + +  +  + G  P  ++Y L+ + Y K      
Sbjct: 520 AGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLG 579

Query: 315 VQKLLKRMEQNGIVPN 330
           ++++  R+++  I P+
Sbjct: 580 IERIENRIKEGQIFPS 595



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 162/404 (40%), Gaps = 75/404 (18%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  ++  + +   Y+ +I   GK G+   A+ LF  M+ +GC P+   YNA+++  L  +
Sbjct: 376 MMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSL-LGKK 434

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  + K L     MK    C PN  T+N +L  C        VN +F+E+      PD
Sbjct: 435 SRSNEMIKMLC---DMKS-NGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPD 490

Query: 121 IYTYNGVMDAYGKNG-------MIKEM----------------------------ESVLS 145
             T+N ++ AYG+ G       M  EM                            E+V+S
Sbjct: 491 RDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVIS 550

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKME---------QVFKSLMHSKE--------- 187
            MKS   KP   +++L++  Y K   +  +E         Q+F S M  +          
Sbjct: 551 DMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCR 610

Query: 188 -----------------KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
                            KP +  FNSM+  + +  +  +AE + + +     +P  +TY 
Sbjct: 611 ALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYN 670

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
            ++ MY       +A EI   L K      + + N +++ +C  GL  EA  +       
Sbjct: 671 SLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTER 730

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           G+ P   TY      YT   M   ++ +++ M +N   PN+  F
Sbjct: 731 GIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTF 774



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 142/326 (43%), Gaps = 14/326 (4%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y+ D   Y+ ++    + G+   A+ LF  M+  G  P    YN ++          ++ 
Sbjct: 206 YLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVF---GKMGRSW 262

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            K LG   +M+  +  K +  T + +L ACA+   + +    F EL      P   TYN 
Sbjct: 263 RKILGVLDEMRS-KGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNA 321

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  +GK G+  E  SVL  M+ N C  D +T+N L+ +Y  R  F K       +M  K
Sbjct: 322 LLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAY-VRAGFSKEAAGVIEMMTKK 380

Query: 187 E-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P   T+ ++I  YGKA  + +A  +F  M      P+  TY  ++++ G     SR+
Sbjct: 381 GVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLG---KKSRS 437

Query: 246 REIFDELSKL---GKDMKVSTLNAMLEAYCMN-GLPTEADLLFENSHNMGVTPDSSTYKL 301
            E+   L  +   G     +T N ML A C N G+    + +F    + G  PD  T+  
Sbjct: 438 NEMIKMLCDMKSNGCSPNRATWNTML-ALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNT 496

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGI 327
           L  AY +   +    K+   M + G 
Sbjct: 497 LISAYGRCGSEVDASKMYGEMTRAGF 522



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 142/326 (43%), Gaps = 6/326 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +    + ++G++ Q  +A  L  ++       D   Y    T  LH   +     KA
Sbjct: 174 DHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAY----TTILHAYSRTGKYEKA 229

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHESILAPDIYTYNGVM 128
           +  F++MK M    P +VTYN++L    +  R+  ++  +  E+    L  D +T + V+
Sbjct: 230 IDLFERMKEMGP-SPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVL 288

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            A  + G+++E +   + +KS   +P  +T+N L+  +GK   + +   V K +  +   
Sbjct: 289 SACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCP 348

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
               T+N ++  Y +A    +A  V + MT     P+ ITY  +I  YG       A ++
Sbjct: 349 ADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKL 408

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F  + + G      T NA+L          E   +  +  + G +P+ +T+  +      
Sbjct: 409 FYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGN 468

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
             M + V ++ + M+  G  P++  F
Sbjct: 469 KGMDKFVNRVFREMKSCGFEPDRDTF 494



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 138/333 (41%), Gaps = 44/333 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ ++A+ G KG  +    +F EM++ G  PD   +N LI+A+     +  A +K  G  
Sbjct: 459 WNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDA-SKMYGEM 517

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +  G   C   + TYN LL A A+  +      +  ++      P   +Y+ ++  Y K
Sbjct: 518 TR-AGFNAC---VTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAK 573

Query: 134 NGMIKEMESVLSRMKSNQC-----------------------------------KPDIIT 158
            G    +E + +R+K  Q                                    KPD++ 
Sbjct: 574 GGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVI 633

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           FN ++  + +   +D+ E + +S+      P L T+NS++  Y +     KAE + + + 
Sbjct: 634 FNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLE 693

Query: 219 AMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
             +  P  ++Y  +I   G+C    +  A  +  E+++ G    + T N  +  Y   G+
Sbjct: 694 KSQLKPDLVSYNTVIK--GFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGM 751

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             E + + E        P+  T+K++   Y +A
Sbjct: 752 FAEIEDVIECMAKNDCRPNELTFKMVVDGYCRA 784



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 124/276 (44%), Gaps = 23/276 (8%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + +KG  R    + S+M++ G +P  + Y+ ++  +          AK   Y 
Sbjct: 529 YNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCY----------AKGGNYL 578

Query: 74  QKMKGMERCK---------PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
               G+ER +         P+ +    LL A  + R +      F    +    PD+  +
Sbjct: 579 ----GIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIF 634

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++  + +N M  + E +L  ++ +   PD++T+N L+D Y +R    K E++ K+L  
Sbjct: 635 NSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEK 694

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
           S+ KP L ++N++I  + +  L  +A  +  +MT     P   TY   ++ Y      + 
Sbjct: 695 SQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAE 754

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
             ++ + ++K        T   +++ YC  G  +EA
Sbjct: 755 IEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEA 790


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 159/358 (44%), Gaps = 44/358 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  ++  + K+G T LA  L ++M      P   +YN +I        K K +  A
Sbjct: 220 DLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC----KYKHMDDA 275

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           L  F++M  KG+   +PN+VTY+ L+            + L  ++ E  + PD++T++ +
Sbjct: 276 LNLFKEMETKGI---RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSAL 332

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +DA+ K G + E E +   M      P I+T++ LI+ +      D+ +Q+F+ ++    
Sbjct: 333 IDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 392

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P + T+N++I  + K +   +   VF++M+      + +TY  +I       +   A+E
Sbjct: 393 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 452

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE-----------NSHNM------ 290
           IF E+   G    + T N +L+  C NG   +A ++FE            ++N+      
Sbjct: 453 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 512

Query: 291 ------------------GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                             GV PD   Y  +   + +   KE    L K M+++G +PN
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 570



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 136/313 (43%), Gaps = 5/313 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI+ +   G+   A  L S+M      PD   ++ALI A +    K   L +A   +
Sbjct: 294 YSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFV----KEGKLVEAEKLY 349

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M       P+IVTY+ L+        +D+   +F+ +      PD+ TYN ++  + K
Sbjct: 350 DEMVK-RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCK 408

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              ++E   V   M       + +T+N+LI    +    D  +++FK ++     P + T
Sbjct: 409 YKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMT 468

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N+++    K     KA  VF+ +   K  P+  TY  +I        V    ++F  LS
Sbjct: 469 YNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLS 528

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V   N M+  +C  G   EAD LF+     G  P+S  Y  L +A  +   +E
Sbjct: 529 LKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDRE 588

Query: 314 LVQKLLKRMEQNG 326
              +L+K M   G
Sbjct: 589 ASAELIKEMRSCG 601



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 153/352 (43%), Gaps = 40/352 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +SKL++ + K  +  + + L  +M+N G   +   Y+ LI           ALA  LG  
Sbjct: 84  FSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALA-VLGKM 142

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+ G E   PNIVT + LL     ++ + +  AL  ++  +   P+  T+N ++     
Sbjct: 143 MKL-GYE---PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +    E  +++ RM +  C+PD++T+ ++++   KR   D    +   +   K +P +  
Sbjct: 199 HNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLI 258

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM---YGYCDNVSR------ 244
           +N++I    K +    A  +F++M      P+ +TY  +I+    YG   + SR      
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318

Query: 245 --------------------------AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
                                     A +++DE+ K   D  + T ++++  +CM+    
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           EA  +FE   +    PD  TY  L K + K    E   ++ + M Q G+V N
Sbjct: 379 EAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 430



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 8/198 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR  + +T  Y+ LI  + + G   +A  +F EM + G  P+   YN L+          
Sbjct: 424 QRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLE 483

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           KA+     Y Q+ K ME   P I TYNI++    +A  V+    LF  L    + PD+  
Sbjct: 484 KAMV-VFEYLQRSK-ME---PTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVA 538

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY---GKRQAFDKMEQVFK 180
           YN ++  + + G  +E +++   MK +   P+   +N LI +    G R+A  ++ +  +
Sbjct: 539 YNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMR 598

Query: 181 SLMHSKEKPTLPTFNSMI 198
           S   + +  T+    +M+
Sbjct: 599 SCGFAGDASTIGLVTNML 616



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 118/278 (42%), Gaps = 5/278 (1%)

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L  A+  F +M    R  P+I+ ++ LL A A+    D V +L +++    +  + YTY+
Sbjct: 62  LDDAVALFGEMVK-SRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++ + +   +    +VL +M     +P+I+T + L++ Y   +   +   +   +  +
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVS 243
             +P   TFN++I          +A  +  +M A    P  +TY  ++   G C   +  
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVN--GLCKRGDTD 238

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  + +++ +   +  V   N +++  C      +A  LF+     G+ P+  TY  L 
Sbjct: 239 LAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLI 298

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
                        +LL  M +  I P+   F   ++ F
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAF 336



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 109/264 (41%), Gaps = 13/264 (4%)

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
           +D   ALF E+ +S   P I  ++ ++ A  K      + S+  +M++     +  T+++
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           LI+ + +R        V   +M    +P + T +S++  Y  ++   +A  +  +M    
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
           Y P+ +T+  +I      +  S A  + D +   G    + T   ++   C  G   + D
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRG---DTD 238

Query: 282 LLFE--NSHNMG-VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           L F   N    G + P    Y  +     K    +    L K ME  GI PN       +
Sbjct: 239 LAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN-------V 291

Query: 339 ETFSSSLAGSQSGSAKTDLTRSLS 362
            T+SS ++   +    +D +R LS
Sbjct: 292 VTYSSLISCLCNYGRWSDASRLLS 315


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 142/319 (44%), Gaps = 12/319 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ +I+ M + G    A  L   M  +G  PD   Y ALI        +   +  A G F
Sbjct: 154 FNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLC----RVGRIEDARGVF 209

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           +KM  +GM   KPN V + IL+ A  +  + + +  L +E+ E  + PD  TYN +++  
Sbjct: 210 EKMCGRGM---KPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGL 266

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            +   +K    ++  M+S   +PD +T+  LID Y K +  D   ++ ++++        
Sbjct: 267 CRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDE 326

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+ ++I    KA     AE V  +M      P   TY  +I  +    +V     +  E
Sbjct: 327 VTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKE 386

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G+   V T N ++  +C  G    AD+L     N+GV+PD  TY +L   + K   
Sbjct: 387 MQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGK 446

Query: 312 KELVQKLLKRMEQNGIVPN 330
              +++L       G VP+
Sbjct: 447 VTDIEEL---KSAKGTVPD 462



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 144/307 (46%), Gaps = 17/307 (5%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK--ALAKALGYFQKM--KGMERCKPN 85
           A   + ++ ++G  P+  ++N L+      RD  +   LA A   F +M  +G+ R    
Sbjct: 100 ACAFYLQLLDAGLPPEAKLFNVLM------RDLVRLGELASAQNVFDEMQSRGVRR---T 150

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           +V++N ++    +A ++D    L + + E+ + PD+YTY  ++    + G I++   V  
Sbjct: 151 VVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFE 210

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
           +M     KP+ + F +LID++ K+   + M ++ + +     +P   T+N+++    +AR
Sbjct: 211 KMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRAR 270

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVST 263
               A  +  +M +    P  +TY  +I   GYC  + +  A EI   +   G  +   T
Sbjct: 271 DLKSASGIVVEMRSAGLRPDTVTYTTLID--GYCKEEELDMAMEIKQNMVAEGVGLDEVT 328

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
             A++      G   +A+ +       G+ PD++TY ++  A+ +    +   +LLK M+
Sbjct: 329 YTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQ 388

Query: 324 QNGIVPN 330
             G  P 
Sbjct: 389 NKGRKPG 395



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 100/227 (44%), Gaps = 7/227 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +++ LI    KKG     + L  EMR  G RPD   YNA++      RD    L  A G 
Sbjct: 223 VFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARD----LKSASGI 278

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +M+     +P+ VTY  L+    +   +D    + + +    +  D  TY  ++    
Sbjct: 279 VVEMRSAG-LRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLS 337

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G   + E VL  M     +PD  T+ ++ID++ ++       ++ K + +   KP + 
Sbjct: 338 KAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVV 397

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           T+N ++  + K      A+ +   M  +  +P  ITY   I + G+C
Sbjct: 398 TYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYN--ILLDGHC 442



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 104/231 (45%), Gaps = 8/231 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   Y+ ++  + +    + A  +  EMR++G RPD   Y  LI  +     K
Sbjct: 248 RERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYC----K 303

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            + L  A+   Q M   E    + VTY  L+   ++A        +  E+ E+ L PD  
Sbjct: 304 EEELDMAMEIKQNMVA-EGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNT 362

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  V+DA+ + G +K    +L  M++   KP ++T+N++++ + K       + +  ++
Sbjct: 363 TYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAM 422

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           ++    P   T+N ++  + K    GK   + +  +A    P    Y  I+
Sbjct: 423 INIGVSPDDITYNILLDGHCK---HGKVTDIEELKSAKGTVPDLGVYTSIV 470


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 152/332 (45%), Gaps = 8/332 (2%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           Q  R     +  Y+ L+    +  +  LA+  F ++  +G R D  + N L+      + 
Sbjct: 102 QGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKR 161

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHE--SILA 118
             +AL   L    ++     C P++ +Y+ILL++ C Q ++  Q + L + + E  ++ +
Sbjct: 162 TDEALDILLHRTPELG----CVPDVFSYSILLKSLCDQGKS-GQADDLLRMMAEGGAVCS 216

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD+  YN V+D + K G + +   +   M      PD +T++ ++ +  K +A DK E  
Sbjct: 217 PDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAF 276

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
            + +++    P   T+N++I  Y       +A  VF++M      P  +T+  ++     
Sbjct: 277 LRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCK 336

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              +  AR++FD ++  G++  V + N ML  Y   G   +   LF+     G+ P   T
Sbjct: 337 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICT 396

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + +L KAY    M +    +   M  +G+ PN
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPN 428



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 152/358 (42%), Gaps = 44/358 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I    K+G    A  LF EM   G  PD   Y++++    H   KA+A+ KA
Sbjct: 218 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVV----HALCKARAMDKA 273

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
             + ++M  KG+    PN  TYN L+   +      +   +FKE+    + PD+ T+N +
Sbjct: 274 EAFLRQMVNKGV---LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNML 330

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           M +  K G IKE   V   M      PD+ ++N++++ Y  +     M  +F  ++    
Sbjct: 331 MGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGI 390

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT------------- 234
            P + TFN +I  Y    +  KA  +F +M      P+ +TY  +I              
Sbjct: 391 APVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAME 450

Query: 235 --------------------MYGYCDNVS--RAREIFDELSKLGKDMKVSTLNAMLEAYC 272
                               + G+C + S  +A+E+  E+   G  + +   ++++   C
Sbjct: 451 KFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLC 510

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             G   +A  +F+ + N+G+ P +  Y +L   Y      E   ++   M   GI PN
Sbjct: 511 KLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 568



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 140/307 (45%), Gaps = 11/307 (3%)

Query: 41  GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM-KGMERCKPNIVTYNILLRACAQA 99
           GC PD   Y+ L+ +     D+ K+  +A    + M +G   C P++V YN ++    + 
Sbjct: 177 GCVPDVFSYSILLKSLC---DQGKS-GQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKE 232

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
            +V++   LFKE+ +  + PD  TY+ V+ A  K   + + E+ L +M +    P+  T+
Sbjct: 233 GDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTY 292

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM---IINYGKARLQGKAEYVFQK 216
           N LI  Y     + +  +VFK +      P + TFN +   +  YGK +   +A  VF  
Sbjct: 293 NNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIK---EARDVFDT 349

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M      P   +Y  ++  Y     +    ++FD +   G    + T N +++AY   G+
Sbjct: 350 MAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGM 409

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
             +A ++F    + GV P+  TY  +  A  +    +   +   +M   G+ P+K  +  
Sbjct: 410 LDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC 469

Query: 337 ALETFSS 343
            ++ F +
Sbjct: 470 LIQGFCT 476



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/329 (20%), Positives = 136/329 (41%), Gaps = 5/329 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +++  + D   ++ L+  + K G+ + A  +F  M   G  PD   YN ++  +      
Sbjct: 316 RRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYA----T 371

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L      F  M G +   P I T+N+L++A A    +D+   +F E+ +  + P++ 
Sbjct: 372 KGCLVDMTDLFDLMLG-DGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVL 430

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  V+ A  + G + +     ++M      PD   ++ LI  +    +  K +++   +
Sbjct: 431 TYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEI 490

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           M++     +  F+S+I N  K      A+ +F     +   P+ + Y  ++  Y     +
Sbjct: 491 MNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKM 550

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +FD +   G +        ++  YC  G   E   LF      G+ P +  Y ++
Sbjct: 551 EKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNII 610

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNK 331
                +A      +     M ++GI  NK
Sbjct: 611 IDGLFEAGRTVPAKVKFHEMTESGIAMNK 639



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 122/278 (43%), Gaps = 9/278 (3%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF  M   G  P    +N LI A+ +       L KA+  F +M+     KPN++TY  +
Sbjct: 381 LFDLMLGDGIAPVICTFNVLIKAYAN----CGMLDKAMIIFNEMRD-HGVKPNVLTYTTV 435

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           + A  +   +D     F ++ +  +APD Y Y+ ++  +  +G + + + ++S + +N  
Sbjct: 436 IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGM 495

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
             DI+ F+ +I++  K       + +F   ++    PT   ++ ++  Y       KA  
Sbjct: 496 HLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALR 555

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL--NAMLEA 270
           VF  M +    P+ + Y  ++  Y     +     +F E+  L K +K ST+  N +++ 
Sbjct: 556 VFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREM--LQKGIKPSTILYNIIIDG 613

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
               G    A + F      G+  +  TY ++ +   K
Sbjct: 614 LFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFK 651



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 98/207 (47%), Gaps = 9/207 (4%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +YS L+      G+   A+ +F  M ++G  P+  VY  L+  +     K   + + L  
Sbjct: 536 VYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYC----KIGRIDEGLSL 591

Query: 73  FQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           F++M  KG+   KP+ + YNI++    +A         F E+ ES +A +  TY+ V+  
Sbjct: 592 FREMLQKGI---KPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRG 648

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             KN    E   +   +++   K DIIT N +I    + +  ++ + +F S+  S   P 
Sbjct: 649 LFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 708

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKM 217
           + T++ MI N  K  L  +AE +F  M
Sbjct: 709 VVTYSIMITNLIKEGLVEEAEDMFSSM 735



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 115/266 (43%), Gaps = 19/266 (7%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  ++S +I  + K G+   A  +F    N G  P   VY+ L+  +         + KA
Sbjct: 498 DIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLV----GKMEKA 553

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           L  F  M   G+E   PN V Y  L+    +   +D+  +LF+E+ +  + P    YN +
Sbjct: 554 LRVFDAMVSAGIE---PNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNII 610

Query: 128 MDAYGKNGM-----IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +D   + G      +K  E   S +  N+C     T+++++    K + FD+   +FK L
Sbjct: 611 IDGLFEAGRTVPAKVKFHEMTESGIAMNKC-----TYSIVLRGLFKNRCFDEAIFLFKEL 665

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                K  + T N+MI    + R   +A+ +F  ++     P  +TY  +IT       V
Sbjct: 666 RAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLV 725

Query: 243 SRAREIFDELSKLGKDMKVSTLNAML 268
             A ++F  +   G +     LN ++
Sbjct: 726 EEAEDMFSSMQNAGCEPDSRLLNHVV 751



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 144/363 (39%), Gaps = 48/363 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +IA + + G+   AM  F++M + G  PD   Y+ LI          KA  K L   
Sbjct: 432 YTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKA--KELISE 489

Query: 74  QKMKGMERCKPNIVTYN-ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
               GM     +IV ++ I+   C   R +D  N +F       L P    Y+ +MD Y 
Sbjct: 490 IMNNGMHL---DIVLFSSIINNLCKLGRVMDAQN-IFDLTVNVGLHPTAVVYSMLMDGYC 545

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP--- 189
             G +++   V   M S   +P+ + +  L++ Y K    D+   +F+ ++    KP   
Sbjct: 546 LVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTI 605

Query: 190 --------------TLP------------------TFNSMIINYGKARLQGKAEYVFQKM 217
                         T+P                  T++ ++    K R   +A ++F+++
Sbjct: 606 LYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKEL 665

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
            AM      IT   +I        V  A+++F  +S+ G    V T + M+      GL 
Sbjct: 666 RAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLV 725

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEA 337
            EA+ +F +  N G  PDS     + +   K N        L ++++      + F LE 
Sbjct: 726 EEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDE------RNFSLEH 779

Query: 338 LET 340
           L T
Sbjct: 780 LTT 782



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 90/201 (44%), Gaps = 10/201 (4%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y  L+    K G+    + LF EM   G +P   +YN +I           A  K    
Sbjct: 571 VYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEM 630

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            +    M +C     TY+I+LR   + R  D+   LFKEL    +  DI T N ++    
Sbjct: 631 TESGIAMNKC-----TYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMF 685

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           +   ++E + + + +  +   P ++T++++I +  K    ++ E +F S+ ++  +P   
Sbjct: 686 QTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEP--- 742

Query: 193 TFNSMIINYGKARLQGKAEYV 213
             +S ++N+    L  K E V
Sbjct: 743 --DSRLLNHVVRELLKKNEIV 761



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/197 (18%), Positives = 82/197 (41%), Gaps = 9/197 (4%)

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA-EY 212
           P   T+ +L+D   +    +     F  L+ +  +  +   N ++  + +A+   +A + 
Sbjct: 109 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDI 168

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +  +   +   P   +Y   I +   CD   ++ +  D L  + +   V + + +     
Sbjct: 169 LLHRTPELGCVPDVFSYS--ILLKSLCDQ-GKSGQADDLLRMMAEGGAVCSPDVVAYNTV 225

Query: 273 MNGLPTEADL-----LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           ++G   E D+     LF+     G+ PD  TY  +  A  KA   +  +  L++M   G+
Sbjct: 226 IDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGV 285

Query: 328 VPNKRFFLEALETFSSS 344
           +PN   +   +  +SS+
Sbjct: 286 LPNNWTYNNLIYGYSST 302


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 156/358 (43%), Gaps = 44/358 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  ++  + K+G T LA  L ++M      P   +YN +I        K K +  A
Sbjct: 15  DLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC----KYKHMDDA 70

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           L  F++M  KG+   +PN+VTY+ L+            + L  ++ E  + PD++T++ +
Sbjct: 71  LNLFKEMETKGI---RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSAL 127

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +DA+ K G + E E +   M      P I+T++ LI+ +      D+ +Q+F+ ++    
Sbjct: 128 IDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 187

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P + T+N++I  + K +   +   VF++M+      + +TY  +I       +   A+E
Sbjct: 188 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 247

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE---------------------- 285
           IF E+   G    + T N +L+  C NG   +A ++FE                      
Sbjct: 248 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 307

Query: 286 -------------NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                        N    GV PD   Y  +   + +   KE    L K M+++G +PN
Sbjct: 308 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 365



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 136/313 (43%), Gaps = 5/313 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI+ +   G+   A  L S+M      PD   ++ALI A +    K   L +A   +
Sbjct: 89  YSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFV----KEGKLVEAEKLY 144

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M       P+IVTY+ L+        +D+   +F+ +      PD+ TYN ++  + K
Sbjct: 145 DEMV-KRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCK 203

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              ++E   V   M       + +T+N+LI    +    D  +++FK ++     P + T
Sbjct: 204 YKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMT 263

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N+++    K     KA  VF+ +   K  P+  TY  +I        V    ++F  LS
Sbjct: 264 YNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLS 323

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V   N M+  +C  G   EAD LF+     G  P+S  Y  L +A  +   +E
Sbjct: 324 LKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDRE 383

Query: 314 LVQKLLKRMEQNG 326
              +L+K M   G
Sbjct: 384 ASAELIKEMRSCG 396



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 118/249 (47%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C+P++VTY +++    +  + D    L  ++ +  L P +  YN ++D   K   + +  
Sbjct: 12  CQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDAL 71

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           ++   M++   +P+++T++ LI        +    ++   ++  K  P + TF+++I  +
Sbjct: 72  NLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAF 131

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            K     +AE ++ +M      PS +TY  +I  +   D +  A+++F+ +        V
Sbjct: 132 VKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDV 191

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T N +++ +C      E   +F      G+  ++ TY +L +   +A   ++ Q++ K 
Sbjct: 192 VTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKE 251

Query: 322 MEQNGIVPN 330
           M  +G+ PN
Sbjct: 252 MVSDGVPPN 260



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 35/224 (15%)

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           +++ RM +  C+PD++T+ ++++   KR   D    +   +   K +P +  +N++I   
Sbjct: 2   ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGL 61

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITM---YGYCDNVSR-------------- 244
            K +    A  +F++M      P+ +TY  +I+    YG   + SR              
Sbjct: 62  CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 121

Query: 245 ------------------AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
                             A +++DE+ K   D  + T ++++  +CM+    EA  +FE 
Sbjct: 122 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 181

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +    PD  TY  L K + K    E   ++ + M Q G+V N
Sbjct: 182 MVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 225



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 8/198 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR  + +T  Y+ LI  + + G   +A  +F EM + G  P+   YN L+          
Sbjct: 219 QRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLE 278

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           KA+     Y Q+ K ME   P I TYNI++    +A  V+    LF  L    + PD+  
Sbjct: 279 KAMV-VFEYLQRSK-ME---PTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVA 333

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY---GKRQAFDKMEQVFK 180
           YN ++  + + G  +E +++   MK +   P+   +N LI +    G R+A  ++ +  +
Sbjct: 334 YNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMR 393

Query: 181 SLMHSKEKPTLPTFNSMI 198
           S   + +  T+    +M+
Sbjct: 394 SCGFAGDASTIGLVTNML 411


>gi|212274769|ref|NP_001130292.1| uncharacterized protein LOC100191386 [Zea mays]
 gi|194688764|gb|ACF78466.1| unknown [Zea mays]
          Length = 510

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 166/378 (43%), Gaps = 55/378 (14%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT---RDKAKAL 66
           D  ++S LI +  + G    A+ LFS +R +G RPD   YNA + A+  +   RD  + L
Sbjct: 44  DLILFSNLIHLALRGGDAPKALALFSRLRAAGIRPDLKAYNAAVAAYCKSDLLRDAKRML 103

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHE-SILAPDIYTY 124
                    M   +   P+  TY+ +L A A+  R++  V+ LF  +   + + PDI  +
Sbjct: 104 ------LHDMPA-DGVAPDAETYSPILAALARRGRHLAAVS-LFSHMRAVARVKPDISVF 155

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N +++AYG+  + +E + +   M+     P ++T+N ++  YG    F +   +F  LM 
Sbjct: 156 NIILNAYGQLDLAREADRLFWSMRRAGVPPSVVTYNTMLRVYGDAGLFGEAVHLF-DLMR 214

Query: 185 SKE----------KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
           S            KP + T+N+MI  YGK+    KA  + Q+M A+   P  ITY  I++
Sbjct: 215 STSDGNGGAGSSVKPNVVTYNTMITIYGKSLEDEKAGRLVQEMQAIGVQPDAITYSTILS 274

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT---------------- 278
           ++     + RA  +F++L + G ++       M+ AY   GL +                
Sbjct: 275 IWVKAGKLDRAARLFEKLREAGTEIDPVLYQTMVVAYERAGLASQAKRLLRDLKDPEGIP 334

Query: 279 ---------------EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
                          EA  LF  + N G   DSS ++ +   Y K      V ++   M 
Sbjct: 335 KETAIKILASAGRLEEAAWLFRRAVNTGEIKDSSVHRAMMDLYAKNRRHRNVIEVFDEMR 394

Query: 324 QNGIVPNKRFFLEALETF 341
           + G +P+      A+  +
Sbjct: 395 KLGQLPDSEIIATAMNAY 412



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 156/340 (45%), Gaps = 16/340 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   YS L+A + + G    A+     M +    PD  +++ LI   L   D 
Sbjct: 2   RERGVTPDAFSYSTLLAALTRAGHLDHALTFLPLMEDDAVAPDLILFSNLIHLALRGGDA 61

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDI 121
            KALA     F +++     +P++  YN  + A C      D    L  ++    +APD 
Sbjct: 62  PKALA----LFSRLRAAG-IRPDLKAYNAAVAAYCKSDLLRDAKRMLLHDMPADGVAPDA 116

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            TY+ ++ A  + G      S+ S M++  + KPDI  FN+++++YG+     + +++F 
Sbjct: 117 ETYSPILAALARRGRHLAAVSLFSHMRAVARVKPDISVFNIILNAYGQLDLAREADRLFW 176

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---------YTPSFITYEC 231
           S+  +   P++ T+N+M+  YG A L G+A ++F  M +             P+ +TY  
Sbjct: 177 SMRRAGVPPSVVTYNTMLRVYGDAGLFGEAVHLFDLMRSTSDGNGGAGSSVKPNVVTYNT 236

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           +IT+YG      +A  +  E+  +G      T + +L  +   G    A  LFE     G
Sbjct: 237 MITIYGKSLEDEKAGRLVQEMQAIGVQPDAITYSTILSIWVKAGKLDRAARLFEKLREAG 296

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
              D   Y+ +  AY +A +    ++LL+ ++    +P +
Sbjct: 297 TEIDPVLYQTMVVAYERAGLASQAKRLLRDLKDPEGIPKE 336



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 2/202 (0%)

Query: 112 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171
           + E  + PD ++Y+ ++ A  + G +    + L  M+ +   PD+I F+ LI    +   
Sbjct: 1   MRERGVTPDAFSYSTLLAALTRAGHLDHALTFLPLMEDDAVAPDLILFSNLIHLALRGGD 60

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE-YVFQKMTAMKYTPSFITYE 230
             K   +F  L  +  +P L  +N+ +  Y K+ L   A+  +   M A    P   TY 
Sbjct: 61  APKALALFSRLRAAGIRPDLKAYNAAVAAYCKSDLLRDAKRMLLHDMPADGVAPDAETYS 120

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGK-DMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289
            I+           A  +F  +  + +    +S  N +L AY    L  EAD LF +   
Sbjct: 121 PILAALARRGRHLAAVSLFSHMRAVARVKPDISVFNIILNAYGQLDLAREADRLFWSMRR 180

Query: 290 MGVTPDSSTYKLLYKAYTKANM 311
            GV P   TY  + + Y  A +
Sbjct: 181 AGVPPSVVTYNTMLRVYGDAGL 202



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 78/173 (45%), Gaps = 9/173 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS ++++  K G+   A  LF ++R +G   DP +Y  ++ A+    ++A   ++A
Sbjct: 265 DAITYSTILSIWVKAGKLDRAARLFEKLREAGTEIDPVLYQTMVVAY----ERAGLASQA 320

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               + +K      P  +     ++  A A  +++   LF+    +    D   +  +MD
Sbjct: 321 KRLLRDLK-----DPEGIPKETAIKILASAGRLEEAAWLFRRAVNTGEIKDSSVHRAMMD 375

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            Y KN   + +  V   M+     PD       +++YGK + FDK   +++++
Sbjct: 376 LYAKNRRHRNVIEVFDEMRKLGQLPDSEIIATAMNAYGKLKEFDKAAALYQAM 428


>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 152/320 (47%), Gaps = 5/320 (1%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T     +I+ +G  G+   A  +F EM+++G +P    YN L+  ++    KA  L  A 
Sbjct: 291 TATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYV----KAGMLKDAE 346

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
               +M+      P+  TY++L+ A + A   +    + KE+  + + P+ Y ++ ++ +
Sbjct: 347 FIVSEME-RSGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILAS 405

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           Y   G  ++   VL  MK++  +PD   +N++ID++GK    D     F  ++    +P 
Sbjct: 406 YRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPD 465

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             T+N++I  + KA L  +AE +F++M    ++P   T+  +I  +G  +     + +  
Sbjct: 466 TVTWNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMG 525

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            +  LG    V T   +++ Y  +G  ++A    E+  + G+ P S+ Y  L  AY +  
Sbjct: 526 NMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKG 585

Query: 311 MKELVQKLLKRMEQNGIVPN 330
           + E      + M  + + P+
Sbjct: 586 LSEQAVNAFRLMRADSLKPS 605



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 142/320 (44%), Gaps = 5/320 (1%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T  Y+ L+    K G  + A ++ SEM  SG  PD   Y+ LI A+      A     A 
Sbjct: 326 TRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAY----SNAGRWESAR 381

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
              ++M+      PN   ++ +L +        +   + KE+  S + PD + YN ++D 
Sbjct: 382 IVLKEMEA-NNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDT 440

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           +GK   +        +M S   +PD +T+N LID + K +  ++ E++F+ +M     P 
Sbjct: 441 FGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMMEKGFSPC 500

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           + TFN MI ++G+       + +   M ++   P+ +TY  +I +YG     S A E  +
Sbjct: 501 VTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLE 560

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           ++   G     +  NA++ AY   GL  +A   F       + P       L  A+ +  
Sbjct: 561 DMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLINAFGEDR 620

Query: 311 MKELVQKLLKRMEQNGIVPN 330
                  +LK M++N + P+
Sbjct: 621 RDAEAFSVLKYMKENDLKPD 640



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 146/325 (44%), Gaps = 5/325 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  + + +I    K G    AM     ++ SG  P  +   A+I+A     D  + + +A
Sbjct: 255 DVQLSNDIIVGFAKAGDPNKAMEFLGMVQASGLSPRTATLIAVISA---LGDSGRII-EA 310

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F++MK     KP    YN LL+   +A  +     +  E+  S ++PD  TY+ ++D
Sbjct: 311 EAIFEEMKD-NGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLID 369

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           AY   G  +    VL  M++N   P+   F+ ++ SY  R  + K  QV K + +S  +P
Sbjct: 370 AYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSGVRP 429

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               +N MI  +GK      A   F KM +    P  +T+  +I  +   +   RA E+F
Sbjct: 430 DRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELF 489

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +E+ + G    V+T N M+ ++       +   L  N  ++G+ P+  TY  L   Y K+
Sbjct: 490 EEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKS 549

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
                  + L+ M+  G+ P+   +
Sbjct: 550 GRFSDAIECLEDMKSAGLKPSSTMY 574



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 145/300 (48%), Gaps = 19/300 (6%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           ++S+++A    +G+ + +  +  EM+NSG RPD   YN +I     T  K   L  A+  
Sbjct: 398 VFSRILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMI----DTFGKFSCLDHAMDT 453

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F KM   E  +P+ VT+N L+    +A   ++   LF+E+ E   +P + T+N +++++G
Sbjct: 454 FDKMLS-EGIQPDTVTWNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTFNIMINSFG 512

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           +     ++++++  M+S    P+++T+  LID YGK   F    +  + +  +  KP+  
Sbjct: 513 EQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSST 572

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            +N++I  Y +  L  +A   F+ M A    PS +    +I  +G      R  E F  L
Sbjct: 573 MYNALINAYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLINAFG---EDRRDAEAFSVL 629

Query: 253 SKLGK-DMK------VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             + + D+K       + + A++     N +P+    ++E     G TPD     +L  A
Sbjct: 630 KYMKENDLKPDVVTYTTLMKALIRVDKFNKVPS----VYEEMILAGCTPDRKARAMLRSA 685



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 113/245 (46%), Gaps = 9/245 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I   GK      AM  F +M + G +PD   +N LI  H     KA+   +A
Sbjct: 430 DRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHC----KAELHERA 485

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F++M  KG   C   + T+NI++ +  +    D V  L   +    L P++ TY  +
Sbjct: 486 EELFEEMMEKGFSPC---VTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTL 542

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D YGK+G   +    L  MKS   KP    +N LI++Y ++   ++    F+ +     
Sbjct: 543 IDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSL 602

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           KP+L   NS+I  +G+ R   +A  V + M      P  +TY  ++      D  ++   
Sbjct: 603 KPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTLMKALIRVDKFNKVPS 662

Query: 248 IFDEL 252
           +++E+
Sbjct: 663 VYEEM 667



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 121/255 (47%), Gaps = 7/255 (2%)

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y+IL+ A  ++  + +    F    +  L+P   TYN +++A  +N  +++  +++SRM+
Sbjct: 157 YSILIHALGRSEKLYEA---FLLSQQQALSP--LTYNALINACARNNDLEKAINLISRMR 211

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDK--MEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
            +    D + ++L+I S  +    D   +++++  +   K +  +   N +I+ + KA  
Sbjct: 212 QDGYPSDFVNYSLIIQSLVRSNRIDSPILQKLYSEIQCDKLELDVQLSNDIIVGFAKAGD 271

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
             KA      + A   +P   T   +I+  G    +  A  IF+E+   G   K    N 
Sbjct: 272 PNKAMEFLGMVQASGLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNG 331

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           +L+ Y   G+  +A+ +       GV+PD  TY LL  AY+ A   E  + +LK ME N 
Sbjct: 332 LLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEANN 391

Query: 327 IVPNKRFFLEALETF 341
           I+PN   F   L ++
Sbjct: 392 IMPNSYVFSRILASY 406



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/419 (20%), Positives = 160/419 (38%), Gaps = 88/419 (21%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +QK     +   +YS LI  +G+  +   A  L  +   S     P  YNALI A     
Sbjct: 144 LQKHNLCFSYELLYSILIHALGRSEKLYEAFLLSQQQALS-----PLTYNALINACARNN 198

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQ--VNALFKEL------ 112
           D    L KA+    +M+  +    + V Y++++++  ++  +D   +  L+ E+      
Sbjct: 199 D----LEKAINLISRMR-QDGYPSDFVNYSLIIQSLVRSNRIDSPILQKLYSEIQCDKLE 253

Query: 113 -----------------------------HESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
                                          S L+P   T   V+ A G +G I E E++
Sbjct: 254 LDVQLSNDIIVGFAKAGDPNKAMEFLGMVQASGLSPRTATLIAVISALGDSGRIIEAEAI 313

Query: 144 LSRMKSNQCK-----------------------------------PDIITFNLLIDSYGK 168
              MK N  K                                   PD  T++LLID+Y  
Sbjct: 314 FEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSN 373

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT---PS 225
              ++    V K +  +   P    F+ ++ +Y   R +G+ +  FQ +  MK +   P 
Sbjct: 374 AGRWESARIVLKEMEANNIMPNSYVFSRILASY---RDRGEWQKSFQVLKEMKNSGVRPD 430

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
              Y  +I  +G    +  A + FD++   G      T N +++ +C   L   A+ LFE
Sbjct: 431 RHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFE 490

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
                G +P  +T+ ++  ++ +    + V+ L+  M   G++PN   +   ++ +  S
Sbjct: 491 EMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKS 549


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 156/327 (47%), Gaps = 15/327 (4%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---HLHTRDKAKA 65
           AD  IY+ +I  + K      A  LF++M   G RPD   YN+LI+    +    D ++ 
Sbjct: 253 ADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRL 312

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L+  +          +  PN+VT++ L+ A  +   + +   L+ E+ +  + PDI+TY+
Sbjct: 313 LSNMIE--------RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 364

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++ +  +  + E + +   M S  C P+++T+N LI  + K +  ++  ++F+ +   
Sbjct: 365 SLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQR 424

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVS 243
                  T+N++I    +A     A+ +F+KM +    P  ITY   I + G C    + 
Sbjct: 425 GLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS--ILLDGLCKYGKLE 482

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           +A  +F+ L K   +  + T N M+E  C  G   +   LF +    GV P+   Y  + 
Sbjct: 483 KALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMI 542

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
             + +  +KE    L + M+++G +P+
Sbjct: 543 SGFCRKGLKEEADALFREMKEDGTLPD 569



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 153/325 (47%), Gaps = 7/325 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  DT  ++ LI  +    +   A+ L  +M   GC+PD   Y A++       D    +
Sbjct: 181 YKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGD----I 236

Query: 67  AKALGYFQKM-KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
             AL   +KM KG  + + ++V YN ++    + +++D   ALF ++    + PD++TYN
Sbjct: 237 DLALSLLKKMEKG--KIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYN 294

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++      G   +   +LS M   +  P+++TF+ LID++ K     + E+++  ++  
Sbjct: 295 SLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 354

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P + T++S+I  +       +A+++F+ M +    P+ +TY  +I  +     V   
Sbjct: 355 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEG 414

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            E+F E+S+ G      T N +++     G    A  +F+   + GV PD  TY +L   
Sbjct: 415 MELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDG 474

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
             K    E    + + ++++ + P+
Sbjct: 475 LCKYGKLEKALVVFEYLQKSKMEPD 499



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 139/319 (43%), Gaps = 44/319 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKALAKALG 71
           +S LI    K+G+   A  L+ EM      PD   Y++LI    +H R D+AK +     
Sbjct: 328 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM----- 382

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            F+ M   + C PN+VTYN L++   +A+ V++   LF+E+ +  L  +  TYN ++   
Sbjct: 383 -FELMISKD-CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 440

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G     + +  +M S+   PDIIT+++L+D   K    +K   VF+ L  SK +P +
Sbjct: 441 FQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDI 500

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+N MI    KA   GK E                                   ++F  
Sbjct: 501 YTYNIMIEGMCKA---GKVE--------------------------------DGWDLFCS 525

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           LS  G    V     M+  +C  GL  EAD LF      G  PDS  Y  L +A  +   
Sbjct: 526 LSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGD 585

Query: 312 KELVQKLLKRMEQNGIVPN 330
           K    +L+K M   G V +
Sbjct: 586 KAASAELIKEMRSCGFVGD 604



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 144/305 (47%), Gaps = 13/305 (4%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ L  +M   G +PD   +N LI         ++A+A      Q+      C+P++VTY
Sbjct: 169 AVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQR-----GCQPDLVTY 223

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
             ++    +  ++D   +L K++ +  +  D+  YN ++D   K   I +  ++ ++M++
Sbjct: 224 GAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMET 283

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
              +PD+ T+N LI        +    ++  +++  K  P + TF+++I  + K     +
Sbjct: 284 KGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVE 343

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDM--KVSTLN 265
           AE ++ +M      P   TY  +I   G+C  D +  A+ +F+ +  + KD    V T N
Sbjct: 344 AEKLYDEMIKRSIDPDIFTYSSLIN--GFCMHDRLDEAKHMFELM--ISKDCFPNVVTYN 399

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            +++ +C      E   LF      G+  ++ TY  L +   +A   ++ QK+ K+M  +
Sbjct: 400 TLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSD 459

Query: 326 GIVPN 330
           G+ P+
Sbjct: 460 GVPPD 464



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 150/355 (42%), Gaps = 46/355 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++KL++ + K  +  L + L   M+N     D   YN LI           ALA  LG  
Sbjct: 83  FNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALA-VLGKM 141

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+ G E   P+IVT + LL     ++ +    AL  ++ E    PD  T+N ++     
Sbjct: 142 MKL-GYE---PDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFL 197

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD-------KMEQ--------- 177
           +    E  +++ +M    C+PD++T+  +++   KR   D       KME+         
Sbjct: 198 HNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 257

Query: 178 -------------------VFKSLMHSKEKPTLPTFNSMI---INYGKARLQGKAEYVFQ 215
                              +F  +     +P + T+NS+I    NYG+      A  +  
Sbjct: 258 YNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGR---WSDASRLLS 314

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            M   K  P+ +T+  +I  +     +  A +++DE+ K   D  + T ++++  +CM+ 
Sbjct: 315 NMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 374

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              EA  +FE   +    P+  TY  L K + KA   E   +L + M Q G+V N
Sbjct: 375 RLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGN 429



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 108/226 (47%), Gaps = 9/226 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI       +   A  +F  M +  C P+   YN LI        KAK + + 
Sbjct: 359 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC----KAKRVEEG 414

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +  F++M  +G+     N VTYN L++   QA + D    +FK++    + PDI TY+ +
Sbjct: 415 MELFREMSQRGL---VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSIL 471

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D   K G +++   V   ++ ++ +PDI T+N++I+   K    +    +F SL     
Sbjct: 472 LDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 531

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           KP +  + +MI  + +  L+ +A+ +F++M      P    Y  +I
Sbjct: 532 KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLI 577



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 118/278 (42%), Gaps = 5/278 (1%)

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L  A+G F +M    R  P+IV +N LL A A+ +  D V +L + +    ++ D+Y+YN
Sbjct: 61  LDDAIGLFGEMV-QSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYN 119

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++ + +   +    +VL +M     +PDI+T + L++ Y   +       +   ++  
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 179

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVS 243
             KP   TFN++I          +A  +  +M      P  +TY  ++   G C   ++ 
Sbjct: 180 GYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVN--GLCKRGDID 237

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  +  ++ K   +  V   N +++  C      +A  LF      G+ PD  TY  L 
Sbjct: 238 LALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLI 297

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
                        +LL  M +  I PN   F   ++ F
Sbjct: 298 SCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAF 335



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 12/140 (8%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS L+  + K G+   A+ +F  ++ S   PD   YN +I        KA  +   
Sbjct: 464 DIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMC----KAGKVEDG 519

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F  +  ++  KPN++ Y  ++    +    ++ +ALF+E+ E    PD   YN ++ 
Sbjct: 520 WDLFCSL-SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIR 578

Query: 130 AYGKNG-------MIKEMES 142
           A  ++G       +IKEM S
Sbjct: 579 ARLRDGDKAASAELIKEMRS 598


>gi|297805706|ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316573|gb|EFH46996.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 680

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 128/247 (51%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P++  YN++LR   +A+     + LF E+ +  LAPD YTY+ ++ ++GK GM     S 
Sbjct: 155 PSVFAYNVVLRNVLRAKQFGIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSW 214

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L +M+ ++   D++ ++ LI+   +   + K   +F  L  S   P L  +NSMI  YGK
Sbjct: 215 LQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGK 274

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A+L  +A  + ++M     +P+ ++Y  ++++Y        A  +F E+ ++   + ++T
Sbjct: 275 AKLFKEARVLIKEMNEAGVSPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCPLDLTT 334

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N M++ Y    +  EAD LF +   M + P+  +Y  + + Y +A +      L + M+
Sbjct: 335 CNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQ 394

Query: 324 QNGIVPN 330
           +  I  N
Sbjct: 395 RKDIEQN 401



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 156/329 (47%), Gaps = 5/329 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 184 RQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDY 243

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +   L KE++E+ ++P+  
Sbjct: 244 SKAIS----IFSRLK-RSGITPDLVAYNSMINVYGKAKLFKEARVLIKEMNEAGVSPNTV 298

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV + MK   C  D+ T N++ID YG+     + +++F SL
Sbjct: 299 SYSTLLSVYVENHKFLEALSVFAEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWSL 358

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG+A L G+A ++F+ M       + +TY  +I +YG     
Sbjct: 359 RKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEH 418

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A  LF+   + GV  D   Y+ +
Sbjct: 419 EKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTM 478

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             AY +  +    ++LL  ++    +P +
Sbjct: 479 IVAYERVGLMGHAKRLLHELKLPDNIPRE 507



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 140/297 (47%), Gaps = 5/297 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  +      A+ +FS ++ SG  PD   YN++I  +     KAK   +
Sbjct: 225 GDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVY----GKAKLFKE 280

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A    ++M       PN V+Y+ LL    +     +  ++F E+ E     D+ T N ++
Sbjct: 281 ARVLIKEMNEAG-VSPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCPLDLTTCNIMI 339

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+  M+KE + +   ++    +P+++++N ++  YG+ + F +   +F+ +     +
Sbjct: 340 DVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIE 399

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+N+MI  YGK     KA  + Q+M +    P+ ITY  II+++G    + RA  +
Sbjct: 400 QNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATL 459

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           F +L   G ++       M+ AY   GL   A  L          P  +   +L KA
Sbjct: 460 FQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKA 516



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 151/334 (45%), Gaps = 9/334 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           +T  YS L++V  +  +   A+ +F+EM+   C  D +  N +I  +     +   + +A
Sbjct: 296 NTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCPLDLTTCNIMIDVY----GQLDMVKEA 351

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F  ++ M+  +PN+V+YN +LR   +A    +   LF+ +    +  ++ TYN ++ 
Sbjct: 352 DRLFWSLRKMD-IEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIK 410

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK    ++  +++  M+S   +P+ IT++ +I  +GK    D+   +F+ L  S  + 
Sbjct: 411 IYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEI 470

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               + +MI+ Y +  L G A+ +  ++      P  I  E  IT+     +   A  +F
Sbjct: 471 DQVLYQTMIVAYERVGLMGHAKRLLHELK----LPDNIPRETAITILAKAGSTEEATWVF 526

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            +  + G+   +S    M+  Y  N        +FE     G  PDS+   ++  AY K 
Sbjct: 527 RQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNAIAMVLNAYGKQ 586

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
              E    + + M++ G V       + L  +SS
Sbjct: 587 REFEKADTVYREMQEEGCVFPDEVHFQMLSLYSS 620



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 19/174 (10%)

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
           +K  P++  +N ++ N  +A+  G A  +F +M      P   TY  +IT +G       
Sbjct: 151 AKYTPSVFAYNVVLRNVLRAKQFGIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDS 210

Query: 245 AREIFD--ELSKLGKDMKV-STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           A       E  ++  D+ + S L  +    C     ++A  +F      G+TPD   Y  
Sbjct: 211 ALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDY---SKAISIFSRLKRSGITPDLVAYNS 267

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN-------------KRFFLEALETFS 342
           +   Y KA + +  + L+K M + G+ PN                FLEAL  F+
Sbjct: 268 MINVYGKAKLFKEARVLIKEMNEAGVSPNTVSYSTLLSVYVENHKFLEALSVFA 321


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 151/312 (48%), Gaps = 9/312 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G TR A+ L  ++     +P+  +Y+ +I A      K + +++A G F
Sbjct: 167 YGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALC----KYQLVSEAYGLF 222

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M  ++    ++VTY+ L+        + +   L  E+    + P++YTYN ++DA  K
Sbjct: 223 SEMT-VKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCK 281

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +KE +SVL+ M     KPD+IT++ L+D Y       K + VF ++      P + T
Sbjct: 282 EGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHT 341

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +  +I  + K ++  +A  +F++M      P  +TY  +I        +    ++ DE+ 
Sbjct: 342 YTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMH 401

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA---- 309
             G+   V T +++++  C NG    A  LF    + G+ P++ T+ +L     K     
Sbjct: 402 DRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLK 461

Query: 310 NMKELVQKLLKR 321
           + +E+ Q LL +
Sbjct: 462 DAQEVFQDLLTK 473



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 156/339 (46%), Gaps = 11/339 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R Y  DT   + LI  +  KGQ + A+    ++   G + +   Y  LI       D  
Sbjct: 122 KRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTR 181

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            A+       QK+ G    KPN+V Y+ ++ A  + + V +   LF E+    ++ D+ T
Sbjct: 182 AAIK----LLQKIDG-RLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVT 236

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ ++  +   G +KE   +L+ M      P++ T+N+L+D+  K     + + V   ++
Sbjct: 237 YSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVML 296

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN-- 241
            +  KP + T+++++  Y       KA++VF  M+ M  TP   TY  +I   G+C N  
Sbjct: 297 KACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILIN--GFCKNKM 354

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTEADLLFENSHNMGVTPDSSTYK 300
           V  A  +F E+ +      + T +++++  C +G +P   DL+ E  H+ G   +  TY 
Sbjct: 355 VDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDE-MHDRGQPANVITYS 413

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
            L     K    +    L  +M+  GI PN   F   L+
Sbjct: 414 SLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLD 452



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 139/306 (45%), Gaps = 13/306 (4%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD   YS LI     +G+ + A+ L +EM      P+   YN L+ A L    K K    
Sbjct: 232 ADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDA-LCKEGKVKEAKS 290

Query: 69  ALGYFQKMKGMERC-KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            L        ++ C KP+++TY+ L+        V +   +F  +    + PD++TY  +
Sbjct: 291 VLAVM-----LKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTIL 345

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++ + KN M+ E  ++   M      P I+T++ LID   K      +  +    MH + 
Sbjct: 346 INGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDE-MHDRG 404

Query: 188 KP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
           +P  + T++S+I    K     +A  +F KM      P+  T+   I + G C    +  
Sbjct: 405 QPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFT--ILLDGLCKGGRLKD 462

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A+E+F +L   G  + V T N M++ +C  GL  EA  +     + G  PD+ T++++  
Sbjct: 463 AQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTFEIIII 522

Query: 305 AYTKAN 310
           A  K +
Sbjct: 523 ALFKKD 528



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 14/185 (7%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI  + K G+      L  EM + G   +   Y++LI        K   L +A+  F
Sbjct: 377 YSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLC----KNGHLDRAIALF 432

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KMK  +  +PN  T+ ILL    +   +     +F++L       ++YTYN ++D + K
Sbjct: 433 NKMKD-QGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCK 491

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLI------DSYGKRQAFDKMEQVFKSLMHSK- 186
            G+++E  ++LS+M+ N C PD +TF ++I      D  G    FDK  +V++ + H K 
Sbjct: 492 QGLLEEALTMLSKMEDNGCIPDAVTFEIIIIALFKKDENGGNVGFDK--KVWEIVEHKKG 549

Query: 187 EKPTL 191
           E P++
Sbjct: 550 ETPSI 554



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 125/331 (37%), Gaps = 47/331 (14%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           LI      GQ      + +++   G  PD    N LI   L  + + K   KAL +  K+
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKG-LCLKGQVK---KALHFHDKL 155

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
              +  + N V+Y  L+    +  +      L +++   +  P++  Y+ ++DA  K  +
Sbjct: 156 LA-QGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQL 214

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           + E   + S M       D++T++ LI  +       +   +   ++     P + T+N 
Sbjct: 215 VSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNI 274

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           ++    K     +A+ V   M      P  ITY  ++  Y     V +A+ +F+ +S   
Sbjct: 275 LVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSL-- 332

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
                                            MGVTPD  TY +L   + K  M +   
Sbjct: 333 ---------------------------------MGVTPDVHTYTILINGFCKNKMVDEAL 359

Query: 317 KLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
            L K M Q  +VP        + T+SS + G
Sbjct: 360 NLFKEMHQKNMVP-------GIVTYSSLIDG 383



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 98/218 (44%), Gaps = 7/218 (3%)

Query: 4    QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            +R Y  DT  ++ LI  +  KGQ   A+    ++   G + +   Y  LI       D  
Sbjct: 989  KRGYHPDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTR 1048

Query: 64   KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             A+       +K+ G    KP++V YN ++ A  + + V +   LF E++   ++ D+ T
Sbjct: 1049 AAIK----LLRKIDG-RLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVT 1103

Query: 124  YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK--RQAFDKMEQVFKS 181
            YN ++  +   G +KE   +L++M      P++ T+N+L+D+  K  +   D+   +   
Sbjct: 1104 YNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSK 1163

Query: 182  LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
            +  +  K    TF  +I    +     K E +  +M A
Sbjct: 1164 MEDNGCKANAVTFEIIISALFEKDENDKVEKLLHEMIA 1201



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 121/314 (38%), Gaps = 68/314 (21%)

Query: 30   AMWLFSEMRNSGCRPDPSVYNALITAHLHTRD---KAKALAKAL--GYFQKMKGMERCKP 84
            A+ L   +   G +PD    N LI    H          LAK L  GY           P
Sbjct: 945  AVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGY----------HP 994

Query: 85   NIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDI----YTYNGVMDAYGKNGMIKE 139
            + +T+  L+   C +     QVN      H+ +LA        +Y  +++   K G  + 
Sbjct: 995  DTITFTTLINGLCLKG----QVNKAL-HFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRA 1049

Query: 140  MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
               +L ++     KPD++ +N +ID+  K Q                             
Sbjct: 1050 AIKLLRKIDGRLTKPDVVMYNTIIDALCKHQ----------------------------- 1080

Query: 200  NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL---G 256
                  L  KA  +F +M     +   +TY  +I  YG+C  V + +E    L+K+    
Sbjct: 1081 ------LVSKAYGLFFEMNVKGISADVVTYNTLI--YGFCI-VGKLKEAIGLLNKMVLKT 1131

Query: 257  KDMKVSTLNAMLEAYCMNG--LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
             +  V T N +++A C  G  L  E+  +     + G   ++ T++++  A  + +  + 
Sbjct: 1132 INPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKDENDK 1191

Query: 315  VQKLLKRMEQNGIV 328
            V+KLL  M   G++
Sbjct: 1192 VEKLLHEMIARGLL 1205



 Score = 45.1 bits (105), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 83/197 (42%), Gaps = 8/197 (4%)

Query: 142  SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
            S+  R++    +PD+ T N+LI+ +           +   ++     P   TF ++I   
Sbjct: 947  SLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGL 1006

Query: 202  GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM-- 259
                   KA +   K+ A  +  + ++Y  +I   G C  +   R     L K+   +  
Sbjct: 1007 CLKGQVNKALHFHDKLLAQGFQLNQVSYGTLIN--GVC-KIGDTRAAIKLLRKIDGRLTK 1063

Query: 260  -KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK-LLYKAYTKANMKELVQK 317
              V   N +++A C + L ++A  LF   +  G++ D  TY  L+Y       +KE +  
Sbjct: 1064 PDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAI-G 1122

Query: 318  LLKRMEQNGIVPNKRFF 334
            LL +M    I PN R +
Sbjct: 1123 LLNKMVLKTINPNVRTY 1139



 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 29/161 (18%), Positives = 61/161 (37%)

Query: 170 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
           Q  D     F  ++  +  P +  FN ++ ++ K +    A  +  ++      P  IT 
Sbjct: 38  QNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITL 97

Query: 230 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289
             +I  + +   ++    +  ++ K G      TLN +++  C+ G   +A    +    
Sbjct: 98  NILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLA 157

Query: 290 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            G   +  +Y  L     K        KLL++++     PN
Sbjct: 158 QGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPN 198


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 155/356 (43%), Gaps = 41/356 (11%)

Query: 12  GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           G++  L +V+   G    A+  FS+M+     P     N L    LH   K         
Sbjct: 26  GVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGL----LHKFAKLGKTDGVKR 81

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           +F+ M G    KP + TYNI++    +  +V+    LF+E+    L PD  TYN ++D +
Sbjct: 82  FFKDMIGA-GAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGF 140

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           GK G + +       MK   C+PD+IT+N LI+ + K     K  + F+ +  +  KP +
Sbjct: 141 GKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNV 200

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            ++++++  + K  +  +A   +  M  +   P+  TY  +I  Y    N+S A  + +E
Sbjct: 201 VSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANE 260

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEA-----------------------DLLFEN-- 286
           + ++G +  V T  A+++  C    PTE                        D L +N  
Sbjct: 261 MLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKL 320

Query: 287 -----------SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
                      S++ G+  +++ Y  +     K N  E    L ++M Q G+VP++
Sbjct: 321 VSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDR 376



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 141/329 (42%), Gaps = 47/329 (14%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K R  I DT  Y+ +I   GK G+    +  F EM++  C PD   YNALI        K
Sbjct: 122 KFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFC----K 177

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L K L +F++MK     KPN+V+Y+ L+ A  +   + Q    + ++    L P+ Y
Sbjct: 178 FGKLPKGLEFFREMK-RNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEY 236

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++DAY K G + +   + + M     + +++T+  LID                  
Sbjct: 237 TYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDG----------------- 279

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN- 241
           +   E PT                  +  ++  +M  +    + +T+ C++ + G C N 
Sbjct: 280 LCGWENPT------------------EGLHLLDEMVELDIKVTVVTF-CVL-IDGLCKNK 319

Query: 242 -VSRAREIFDELSK-LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            VS+A + F  +S   G     +   AM++  C       A  LFE     G+ PD + Y
Sbjct: 320 LVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAY 379

Query: 300 -KLLYKAYTKANMKELVQKLLKRMEQNGI 327
             L+   + + N+ E +  L  +M + G+
Sbjct: 380 TSLMDGNFKQGNVLEAL-ALRDKMVETGM 407



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 102/246 (41%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C P    ++ L         V++    F ++    + P   + NG++  + K G    ++
Sbjct: 21  CVPGFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVK 80

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
                M     KP + T+N++ID   K    +    +F+ +      P   T+NSMI  +
Sbjct: 81  RFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGF 140

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
           GK          F++M  M   P  ITY  +I  +     + +  E F E+ + G    V
Sbjct: 141 GKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNV 200

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            + + +++A+C  G+  +A   + +   +G+ P+  TY  L  AY K        +L   
Sbjct: 201 VSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANE 260

Query: 322 MEQNGI 327
           M Q G+
Sbjct: 261 MLQVGV 266



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 2/228 (0%)

Query: 115 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
           ++  P    ++ +       GM++E     S+MK  +  P   + N L+  + K    D 
Sbjct: 19  NVCVPGFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDG 78

Query: 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
           +++ FK ++ +  KPT+ T+N MI    K      A  +F++M      P  +TY  +I 
Sbjct: 79  VKRFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMID 138

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTEADLLFENSHNMGVT 293
            +G    +      F+E+  +  +  V T NA++  +C  G LP   +   E   N G+ 
Sbjct: 139 GFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRN-GLK 197

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           P+  +Y  L  A+ K  M +   K    M + G+VPN+  +   ++ +
Sbjct: 198 PNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAY 245



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 31/181 (17%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI---------TAHLHTRD--- 61
           Y+ LI    K G    A  L +EM   G   +   Y ALI         T  LH  D   
Sbjct: 238 YTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMV 297

Query: 62  -------------------KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
                              K K ++KA+ YF ++      + N   Y  ++    +   V
Sbjct: 298 ELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQV 357

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           +    LF+++ +  L PD   Y  +MD   K G + E  ++  +M     K D++ +  L
Sbjct: 358 EAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLLAYTSL 417

Query: 163 I 163
           +
Sbjct: 418 V 418


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 144/315 (45%), Gaps = 9/315 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +  +I  + K G+ + A  +  +M+  G  P    YN +I  +     KA  + KA    
Sbjct: 232 FDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYC----KAGKMFKADALL 287

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M   +R  PN +T+NIL+    +  NV     +F+E+    L P++ TYN +++    
Sbjct: 288 KEMVA-KRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCS 346

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           NG + E   +  +M     KP+++T+N LI+ + K++   +  ++   +      P + T
Sbjct: 347 NGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVIT 406

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDE 251
           FN++I  YGKA     A  +   M      P+  TY C+I   G+C   NV  AR++  E
Sbjct: 407 FNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIV--GFCREGNVKEARKLAKE 464

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G    + T N +++A C  G   +A  L +    +G+ P   TY  L   Y +   
Sbjct: 465 MEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGN 524

Query: 312 KELVQKLLKRMEQNG 326
                 +   ME+ G
Sbjct: 525 STAALNVRTLMEKKG 539



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 157/325 (48%), Gaps = 11/325 (3%)

Query: 6   WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA 65
           W  A++ I   L+    K G+  LA+  F    + G R      N ++ + +    K   
Sbjct: 154 WGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLV----KEGR 209

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           +      +++M    R   N+VT+++++    +     +   + +++     +P + TYN
Sbjct: 210 IGVVESVYKEMI-RRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYN 268

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++D Y K G + + +++L  M + +  P+ ITFN+LID + + +     ++VF+ +   
Sbjct: 269 TIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQ 328

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VS 243
             +P + T+NS+I          +A  +  KM+ M   P+ +TY  +I   G+C    + 
Sbjct: 329 GLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALIN--GFCKKKMLK 386

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            ARE+ D++ K G    V T N +++AY   G   +A LL     + GV P+ STY  L 
Sbjct: 387 EAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLI 446

Query: 304 KAYTK-ANMKELVQKLLKRMEQNGI 327
             + +  N+KE  +KL K ME NG+
Sbjct: 447 VGFCREGNVKE-ARKLAKEMEGNGL 470



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 133/270 (49%), Gaps = 5/270 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           +F EM+  G +P+   YN+LI   L +  K   L +ALG   KM GM   KPN+VTYN L
Sbjct: 321 VFEEMQRQGLQPNVVTYNSLING-LCSNGK---LDEALGLQDKMSGMG-LKPNVVTYNAL 375

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    + + + +   +  ++ +  LAP++ T+N ++DAYGK G + +   + S M     
Sbjct: 376 INGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGV 435

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            P++ T+N LI  + +     +  ++ K +  +  K  L T+N ++    K     KA  
Sbjct: 436 CPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVR 495

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +  +M  +   PS +TY  +I  Y    N + A  +   + K G+   + T N +++ +C
Sbjct: 496 LLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFC 555

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             G   EA+ L       G+ P+ +TY +L
Sbjct: 556 NKGKLEEANRLLNEMLEKGLIPNRTTYDIL 585



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 110/214 (51%), Gaps = 4/214 (1%)

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G I  +ESV   M   +   +++TF+++I+   K   F K   V + +      P++ 
Sbjct: 206 KEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVI 265

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFD 250
           T+N++I  Y KA    KA+ + ++M A +  P+ IT+  +I   G+C  +NV+ A+++F+
Sbjct: 266 TYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILID--GFCRDENVTAAKKVFE 323

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+ + G    V T N+++   C NG   EA  L +    MG+ P+  TY  L   + K  
Sbjct: 324 EMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKK 383

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           M +  +++L  + + G+ PN   F   ++ +  +
Sbjct: 384 MLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKA 417



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 117/246 (47%), Gaps = 4/246 (1%)

Query: 87  VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 146
           ++ N +L +  +   +  V +++KE+    +  ++ T++ V++   K G  ++   V+  
Sbjct: 195 LSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVED 254

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           MK+    P +IT+N +ID Y K     K + + K ++  +  P   TFN +I  + +   
Sbjct: 255 MKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDEN 314

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTL 264
              A+ VF++M      P+ +TY  +I   G C N  +  A  + D++S +G    V T 
Sbjct: 315 VTAAKKVFEEMQRQGLQPNVVTYNSLIN--GLCSNGKLDEALGLQDKMSGMGLKPNVVTY 372

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           NA++  +C   +  EA  + ++    G+ P+  T+  L  AY KA   +    L   M  
Sbjct: 373 NALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLD 432

Query: 325 NGIVPN 330
            G+ PN
Sbjct: 433 TGVCPN 438



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 5/136 (3%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD   Y+ L+  + KKG+TR A+ L  EM   G  P    YNALI  +    +   AL  
Sbjct: 472 ADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAAL-- 529

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
            +    + KG    + NIVTYN+L++       +++ N L  E+ E  L P+  TY+ + 
Sbjct: 530 NVRTLMEKKGR---RANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILR 586

Query: 129 DAYGKNGMIKEMESVL 144
           D   + G I +++  L
Sbjct: 587 DEMMEKGFIPDIDGHL 602


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 144/335 (42%), Gaps = 12/335 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  + ++     A+ LF  +   G  P+   YN LI   L    K   + +A   F
Sbjct: 261 YNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLL----KEDRVNEAFELF 316

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             +   G+E   P+ +TY + +    +A  V+    + K++ E    PD+ ++N V++  
Sbjct: 317 SGLVKHGLE---PDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGL 373

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K   + E E +LS M++  C P+ I+FN LI    +   + K    FK ++    KPT+
Sbjct: 374 CKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTV 433

Query: 192 PTFNSMIINYGKARLQGK---AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
            T+N ++    KAR +G+   A  +F  M      P  +TY  +I   G    +  AR +
Sbjct: 434 VTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRL 493

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
              +   G    V T N+++   C      EA  LF      G  PD+ TY  +  A  K
Sbjct: 494 LGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCK 553

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
             M +    L     + G+VP    +   ++   +
Sbjct: 554 QEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCA 588



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 146/326 (44%), Gaps = 17/326 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L++ +   G+   A  L+  M  +G  PD   YN L    LH   K   L +AL  F
Sbjct: 88  YNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTL----LHGFCKVGKLDEALKIF 143

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
                +G     P++VTYN L+    +A  +D+   + + +    L PD+ TYN +++  
Sbjct: 144 DGAVKRGF---VPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGL 200

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-QAFDKMEQVFKSLMHSKEKPT 190
            KNG + E   ++         P++IT++ LI    +  +  +   Q+ + ++ +  KP 
Sbjct: 201 CKNGRVDEARMLIV---DKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPD 257

Query: 191 LPTFNSMIINYGKARLQGKAEY--VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           + ++N++I  +G AR QG +E   +F  +    Y P   TY  +I      D V+ A E+
Sbjct: 258 IVSYNALI--HGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFEL 315

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F  L K G +    T    ++  C  G   +A L+ ++    G  PD  ++  +     K
Sbjct: 316 FSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCK 375

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
               +  + LL  ME  G  PN   F
Sbjct: 376 EKRVDEAEVLLSGMEAKGCSPNAISF 401



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 140/326 (42%), Gaps = 10/326 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ L+  + K G+   A  L  +    G  P+   Y+ LI+       + + L 
Sbjct: 187 VPDVVTYNSLVNGLCKNGRVDEARMLIVD---KGFSPNVITYSTLISGLCR---ELRRLE 240

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            A    +KM  +  CKP+IV+YN L+   A+ + V +   LF  +      P++ TYN +
Sbjct: 241 SARQLLEKMV-LNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNIL 299

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D   K   + E   + S +  +  +PD IT+ + ID   K    +    + K +     
Sbjct: 300 IDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGC 359

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P + + N++I    K +   +AE +   M A   +P+ I++  +I          +A  
Sbjct: 360 VPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMT 419

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYC---MNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
            F E+ K G    V T N +++  C     G   EA  LF+     G  PD  TY  L  
Sbjct: 420 TFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALID 479

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
              KA   +  ++LL  ME  G +PN
Sbjct: 480 GLGKAGKLDDARRLLGAMEAKGCIPN 505



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 146/333 (43%), Gaps = 27/333 (8%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D   Y+ L+    K G+   A+ +F      G  PD   YNALI        KA  L
Sbjct: 116 YSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFC----KADKL 171

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            +A    Q+M   E   P++VTYN L+    +   VD+   L   + +   +P++ TY+ 
Sbjct: 172 DEAQRILQRMVS-ESLVPDVVTYNSLVNGLCKNGRVDEARML---IVDKGFSPNVITYST 227

Query: 127 VMDAYGKNGMIKEMES---VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           ++    +   ++ +ES   +L +M  N CKPDI+++N LI    + Q   +  ++F S++
Sbjct: 228 LISGLCRE--LRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVL 285

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
               +P +PT+N +I    K     +A  +F  +      P  ITY   I      D + 
Sbjct: 286 RQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFI------DGLC 339

Query: 244 RAREIFDELSKLGKDM-------KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
           +A  + D L  L KDM        V + NA++   C      EA++L       G +P++
Sbjct: 340 KAGRVEDALLML-KDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNA 398

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
            ++  L     +A   +      K M + G+ P
Sbjct: 399 ISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKP 431



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 114/249 (45%), Gaps = 15/249 (6%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++  + D   ++ +I  + K+ +   A  L S M   GC P+   +N LI        +A
Sbjct: 356 EKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQC----RA 411

Query: 64  KALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARN---VDQVNALFKELHESILA 118
               KA+  F++M  +G+   KP +VTYNIL+    +AR    + +   LF  + E    
Sbjct: 412 GKWKKAMTTFKEMLKRGV---KPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRV 468

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD+ TY+ ++D  GK G + +   +L  M++  C P++ T+N LI         D+  ++
Sbjct: 469 PDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALEL 528

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           F +++     P   T+ ++I    K  +  KA  +F         P+   Y  +I   G 
Sbjct: 529 FVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLID--GL 586

Query: 239 CDNVSRARE 247
           C  V+R  E
Sbjct: 587 C-AVARVDE 594



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 5/179 (2%)

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           PD  T  +L+ S  K    +K  +  + L+  K    + TFN  I    +A   G A+ V
Sbjct: 14  PDAYTVGILLRSLLKSGKIEKAHRFVEQLL-VKGLCDISTFNIYISGLCRASRIGDAQTV 72

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
           F  M    + P+ ITY  +++  G C+   +S A+ +++ + K G    V T N +L  +
Sbjct: 73  FDGMRKHGFWPNRITYNALLS--GLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGF 130

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           C  G   EA  +F+ +   G  PD  TY  L   + KA+  +  Q++L+RM    +VP+
Sbjct: 131 CKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPD 189



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/320 (19%), Positives = 130/320 (40%), Gaps = 39/320 (12%)

Query: 44  PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD 103
           PD      L+ + L    K+  + KA  + +++     C  +I T+NI +    +A  + 
Sbjct: 14  PDAYTVGILLRSLL----KSGKIEKAHRFVEQLLVKGLC--DISTFNIYISGLCRASRIG 67

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
               +F  + +    P+  TYN ++      G + + +++  RM      PD++T+N L+
Sbjct: 68  DAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLL 127

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
             + K    D+  ++F   +     P + T+N++I  + KA    +A+ + Q+M +    
Sbjct: 128 HGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLV 187

Query: 224 PSFITYECIIT------------------------------MYGYCDNVSR---AREIFD 250
           P  +TY  ++                               + G C  + R   AR++ +
Sbjct: 188 PDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRRLESARQLLE 247

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           ++   G    + + NA++         +EA  LF +    G  P+  TY +L     K +
Sbjct: 248 KMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKED 307

Query: 311 MKELVQKLLKRMEQNGIVPN 330
                 +L   + ++G+ P+
Sbjct: 308 RVNEAFELFSGLVKHGLEPD 327


>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
 gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 151/301 (50%), Gaps = 7/301 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++ ++G+  Q      L  +M   GC+P    YN LI    H+  +A  L  A
Sbjct: 337 DGYTYTTMVGILGRAKQFVAINKLLDQMVRDGCQPTVVTYNRLI----HSYGRANYLNDA 392

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +  F +M+    C+P+ VTY  L+   A+A  ++    +++ +  + L+PD +TY+ +++
Sbjct: 393 VEVFNQMQ-KAGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMIN 451

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
             GK G +   + +   M    C P+++T+N++I    K + +    ++++ + ++  +P
Sbjct: 452 CLGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKARNYQNALKLYRDMQNAGFEP 511

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T++ ++   G +    +AE +F +M    + P    Y  ++ ++G   NV +A E +
Sbjct: 512 DKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWEWY 571

Query: 250 DELSKLGKDMKVSTLNAMLEAYC-MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             +   G    V T N++L A+  +N LP   +LL ++  N+G+ P   TY LL    T+
Sbjct: 572 QAMLHAGLCPNVPTCNSLLSAFLRVNRLPDAYNLL-QSMLNLGLNPSLQTYTLLLSCCTE 630

Query: 309 A 309
           A
Sbjct: 631 A 631



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 131/296 (44%), Gaps = 8/296 (2%)

Query: 43  RPDPSVYNALITAHLHTRD-KAKALAK-------ALGYFQKMKGMERCKPNIVTYNILLR 94
           R  PS   AL+  + H    +A  + K       ALG+F  +K +   K +  TY  ++ 
Sbjct: 287 RWGPSAEEALVNLNCHMDAYQANQVLKQLQDHTVALGFFHWLKQLPGFKHDGYTYTTMVG 346

Query: 95  ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
              +A+    +N L  ++      P + TYN ++ +YG+   + +   V ++M+   C+P
Sbjct: 347 ILGRAKQFVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAVEVFNQMQKAGCEP 406

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           D +T+  LID + K    +   ++++ +  +   P   T++ MI   GKA     A+ +F
Sbjct: 407 DRVTYCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMINCLGKAGHLAAADKLF 466

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
            +M      P+ +TY  +I +     N   A +++ ++   G +    T + ++E    +
Sbjct: 467 CEMIEQGCVPNLVTYNIMIALQAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHS 526

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           G   EA+ +F         PD   Y LL   + KA   E   +  + M   G+ PN
Sbjct: 527 GYLDEAEAIFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWEWYQAMLHAGLCPN 582



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 108/245 (44%), Gaps = 14/245 (5%)

Query: 104 QVNALFKELHESILA--------------PDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           Q N + K+L +  +A               D YTY  ++   G+      +  +L +M  
Sbjct: 307 QANQVLKQLQDHTVALGFFHWLKQLPGFKHDGYTYTTMVGILGRAKQFVAINKLLDQMVR 366

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
           + C+P ++T+N LI SYG+    +   +VF  +  +  +P   T+ ++I  + KA     
Sbjct: 367 DGCQPTVVTYNRLIHSYGRANYLNDAVEVFNQMQKAGCEPDRVTYCTLIDIHAKAGFLNF 426

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  ++Q+M A   +P   TY  +I   G   +++ A ++F E+ + G    + T N M+ 
Sbjct: 427 AMEMYQRMQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIA 486

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
                     A  L+ +  N G  PD  TY ++ +    +   +  + +   M++   VP
Sbjct: 487 LQAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVP 546

Query: 330 NKRFF 334
           ++  +
Sbjct: 547 DEPVY 551



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 149/336 (44%), Gaps = 23/336 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  YS +I  +GK G    A  LF EM   GC P+   YN +I      + KA+    A
Sbjct: 442 DTFTYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIA----LQAKARNYQNA 497

Query: 70  LGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           L  ++ M+  G E   P+ VTY+I++     +  +D+  A+F E+      PD   Y  +
Sbjct: 498 LKLYRDMQNAGFE---PDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVPDEPVYGLL 554

Query: 128 MDAYGKNGMI-KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +D +GK G + K  E   + + +  C P++ T N L+ ++ +         + +S+++  
Sbjct: 555 VDLWGKAGNVEKAWEWYQAMLHAGLC-PNVPTCNSLLSAFLRVNRLPDAYNLLQSMLNLG 613

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV-SRA 245
             P+L T+  ++    +AR         + M+   + P+ +    + +      NV    
Sbjct: 614 LNPSLQTYTLLLSCCTEARSPYDMGCYCELMSVTGH-PAHMFLSSLPSAGPDGQNVRHHV 672

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD-----SSTYK 300
            +  D +    ++ K   ++A+++    +GL  EA  ++E +    V PD     SS Y 
Sbjct: 673 SKFLDMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEIAAQRNVYPDAVKEKSSCYW 732

Query: 301 LL-----YKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           L+      +      +   +    ++M  +G++P++
Sbjct: 733 LINLHVMSEGTAVTALSRTLAWFRRQMLVSGVIPSR 768



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 107/251 (42%), Gaps = 8/251 (3%)

Query: 102 VDQVNALFKELHESILAPD-IYTYNGVMDAYGKNGMIKEMESVLSRM-------KSNQCK 153
           V+ V+ + ++L     A + +   N  MDAY  N ++K+++     +       +    K
Sbjct: 276 VENVSQILRQLRWGPSAEEALVNLNCHMDAYQANQVLKQLQDHTVALGFFHWLKQLPGFK 335

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
            D  T+  ++   G+ + F  + ++   ++    +PT+ T+N +I +YG+A     A  V
Sbjct: 336 HDGYTYTTMVGILGRAKQFVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAVEV 395

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F +M      P  +TY  +I ++     ++ A E++  +   G      T + M+     
Sbjct: 396 FNQMQKAGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMINCLGK 455

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
            G    AD LF      G  P+  TY ++     KA   +   KL + M+  G  P+K  
Sbjct: 456 AGHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKARNYQNALKLYRDMQNAGFEPDKVT 515

Query: 334 FLEALETFSSS 344
           +   +E    S
Sbjct: 516 YSIVMEVLGHS 526


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 153/318 (48%), Gaps = 6/318 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y++LI  +GK G+   A   + EM+  GC+PD  V N +I    +   KA  L   
Sbjct: 299 DVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMI----NFLGKAGRLDDG 354

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARN-VDQVNALFKELHESILAPDIYTYNGVM 128
           L  F++M G+  C PN+VTYN +++A  ++++ V +V + F+ +  S ++P  +TY+ ++
Sbjct: 355 LKLFEEM-GVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILI 413

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D + K   I++   +L  M      P    +  LID+ GK + +D   ++F+ L  +   
Sbjct: 414 DGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGS 473

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
            +   +  MI + GKA     A  +F +M+ +  TP+   Y  +++       +  A   
Sbjct: 474 SSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTT 533

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             ++ + G    +++ N +L      G P  A  +  N  N  + PD+ +Y  +  A + 
Sbjct: 534 MRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSH 593

Query: 309 ANMKELVQKLLKRMEQNG 326
           A M E   +L+K M   G
Sbjct: 594 AGMFEEAAELMKEMNALG 611



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 146/333 (43%), Gaps = 6/333 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ +I++  K      A+ LF EMR   CRPD   Y  LI        KA  + +A  +
Sbjct: 267 IYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRG----LGKAGRIDEAYHF 322

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA-Y 131
           + +M+  E CKP+ V  N ++    +A  +D    LF+E+  S   P++ TYN ++ A +
Sbjct: 323 YHEMQ-REGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALF 381

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
                + E+ S   RMK +   P   T+++LID + K    +K   + + +      P  
Sbjct: 382 ESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCP 441

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             + S+I   GKA+    A  +FQ++     + S   Y  +I   G    +  A  +FDE
Sbjct: 442 AAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDE 501

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +SKLG    V   NA++       +  EA          G  PD ++Y ++     K   
Sbjct: 502 MSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGG 561

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
                ++L  M+ + I P+   +   L   S +
Sbjct: 562 PHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHA 594



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 150/350 (42%), Gaps = 34/350 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSG-CRPDPSVYNALITAH--LHTRDKAKALAK-- 68
           Y+ +I ++  +GQ      L++EM N G C+PD   Y+ALI+A   L  +D A  L    
Sbjct: 197 YNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEM 256

Query: 69  ---------------------------ALGYFQKMKGMERCKPNIVTYNILLRACAQARN 101
                                      AL  F++M+ M  C+P++ TY  L+R   +A  
Sbjct: 257 KENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYM-YCRPDVFTYTELIRGLGKAGR 315

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
           +D+    + E+      PD    N +++  GK G + +   +   M  + C P+++T+N 
Sbjct: 316 IDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNT 375

Query: 162 LIDS-YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
           +I + +  +    ++   F+ +  S   P+  T++ +I  + K     KA  + ++M   
Sbjct: 376 IIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEK 435

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
            + P    Y  +I   G       A E+F EL +            M++     G   +A
Sbjct: 436 GFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDA 495

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             LF+    +G TP+   Y  L     +A M +     +++M+++G +P+
Sbjct: 496 INLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPD 545



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 135/314 (42%), Gaps = 9/314 (2%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S++I ++G       A+ +F +++   C+P    YN++I   +H     K        + 
Sbjct: 163 SQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHE----LYN 218

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M     C+P+ VTY+ L+ A  +    D    L  E+ E+ + P    Y  ++  + K 
Sbjct: 219 EMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKL 278

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
             +    S+   M+   C+PD+ T+  LI   GK    D+    +  +     KP     
Sbjct: 279 DNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVM 338

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N+MI   GKA        +F++M      P+ +TY  II      ++ SR  E+F    +
Sbjct: 339 NNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIK--ALFESKSRVSEVFSWFER 396

Query: 255 L-GKDMKVS--TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + G  +  S  T + +++ +C      +A +L E     G  P  + Y  L  A  KA  
Sbjct: 397 MKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKR 456

Query: 312 KELVQKLLKRMEQN 325
            +L  +L + +++N
Sbjct: 457 YDLACELFQELKEN 470



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 109/228 (47%), Gaps = 7/228 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI    K  +   AM L  EM   G  P P+ Y +LI A      KAK    A   F
Sbjct: 409 YSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDA----LGKAKRYDLACELF 464

Query: 74  QKMKGMERCKPNIV-TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           Q++K  E C  +    Y ++++   +A  +D    LF E+ +    P++Y YN +M    
Sbjct: 465 QELK--ENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLA 522

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           +  M+ E  + + +M+ + C PDI ++N++++   K     +  ++  ++ +S  KP   
Sbjct: 523 RACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAV 582

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           ++N+++     A +  +A  + ++M A+ +    ITY  I+   G  D
Sbjct: 583 SYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGKVD 630



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 124/301 (41%), Gaps = 4/301 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT + + +I  +GK G+    + LF EM  S C P+   YN +I A   ++ +   +++ 
Sbjct: 334 DTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSR---VSEV 390

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
             +F++MKG     P+  TY+IL+    +   +++   L +E+ E    P    Y  ++D
Sbjct: 391 FSWFERMKG-SGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLID 449

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A GK         +   +K N        + ++I   GK    D    +F  +      P
Sbjct: 450 ALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTP 509

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  +N+++    +A +  +A    +KM      P   +Y  I+          RA E+ 
Sbjct: 510 NVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEML 569

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             +          + N +L A    G+  EA  L +  + +G   D  TY  + +A  K 
Sbjct: 570 TNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGKV 629

Query: 310 N 310
           +
Sbjct: 630 D 630



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/234 (20%), Positives = 98/234 (41%), Gaps = 5/234 (2%)

Query: 102 VDQVNALFKELHESILAPDIYT----YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           V+Q   ++K + E + +P         + V+   G   MI +  ++  ++K+ +C+P   
Sbjct: 136 VEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQ 195

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKAEYVFQK 216
            +N +I        ++K+ +++  + +    +P   T++++I  + K   Q  A  +  +
Sbjct: 196 AYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNE 255

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M      P+   Y  II+++   DNV  A  +F+E+  +     V T   ++      G 
Sbjct: 256 MKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGR 315

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             EA   +      G  PD+     +     KA   +   KL + M  +  +PN
Sbjct: 316 IDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPN 369



 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 35/188 (18%)

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN-YGKARLQGKAEYV 213
           D  T+  LI      + + +M ++ + ++ S      P   S +I   G A++ GKA  +
Sbjct: 122 DTSTYMALIHCLELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITI 181

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F ++ A K  P+   Y  +I M  +     +  E+++E+S               E +C 
Sbjct: 182 FYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSN--------------EGHC- 226

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
                               PD+ TY  L  A+ K   ++   +LL  M++NG+ P  + 
Sbjct: 227 -------------------QPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKI 267

Query: 334 FLEALETF 341
           +   +  F
Sbjct: 268 YTMIISLF 275


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 155/331 (46%), Gaps = 15/331 (4%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R+   +  + +  I  + K G+   A  ++ ++   G   + +  NALI    H   +  
Sbjct: 416 RFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALI----HGLCQGN 471

Query: 65  ALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            + +A    + M   G+E    + +TYNI+++ C +A  +D+   L  ++ +    PD++
Sbjct: 472 NMKEATKVLKAMVNSGVEL---DRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLF 528

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           T+N  +  Y   G ++E+  +L +MKS   KPDI+T+  +ID Y K +   K  +    L
Sbjct: 529 TFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTEL 588

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT---PSFITYECIITMYGYC 239
           M +  +P    +N++I  YG+    G        +  MKY    P+ +TY  ++    + 
Sbjct: 589 MKNGLRPNAVIYNALIGGYGR---NGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHA 645

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             V   + +F +      ++ V     +++ +C  G   EA + F+  H+ G+ P+  TY
Sbjct: 646 GLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTY 705

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             L  AY+K+  KE   KL   M   GIVP+
Sbjct: 706 TTLMFAYSKSGNKEEASKLFDEMVSLGIVPD 736



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 120/280 (42%), Gaps = 9/280 (3%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERCKPNIVTYN 90
           +   M NSG   D   YN +I        KA  + +A+     M  +G    KP++ T+N
Sbjct: 479 VLKAMVNSGVELDRITYNIMIQGCC----KASKMDEAIQLRDDMIKRGF---KPDLFTFN 531

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
           I L        V+++  L  ++    L PDI TY  ++D Y K   + +    L+ +  N
Sbjct: 532 IFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKN 591

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
             +P+ + +N LI  YG+         +  ++ ++  +PT  T+NS++     A L  + 
Sbjct: 592 GLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEV 651

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
           + VF +          I Y  II  +     +  A   F E+   G      T   ++ A
Sbjct: 652 KAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFA 711

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           Y  +G   EA  LF+   ++G+ PDS +Y  L   + + +
Sbjct: 712 YSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGFCEVD 751



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 125/263 (47%), Gaps = 2/263 (0%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHES-ILAPDIYTYNGVMDAYGKNGMIKEMES 142
           P+I T +IL+ A      +D    +F E+ +   +APD++TY  ++ A  + G I    +
Sbjct: 173 PSIKTCSILVEALGCGGQLDVARKVFGEMRDGKTVAPDVHTYTAMIKALCRAGEIDAAFA 232

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +L+ ++ +  +P ++T+N+L+D+  K    ++  ++   ++  + +P++ TF  +I    
Sbjct: 233 MLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLA 292

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           + +  G+   V Q+M     TP+ + Y  +I  +    + S A ++FDE+   G    V 
Sbjct: 293 RGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTVV 352

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK-ELVQKLLKR 321
           T N + +A C  G    A+ + +     G+    S +  +   + +   + +LV +L++ 
Sbjct: 353 TYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIRE 412

Query: 322 MEQNGIVPNKRFFLEALETFSSS 344
           M    + PN       ++    S
Sbjct: 413 MLARFLKPNDALMTACIQELCKS 435



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 150/348 (43%), Gaps = 18/348 (5%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+  +    D   Y+ +I  + + G+   A  + +E+R SG +P    YN L+ A   + 
Sbjct: 201 MRDGKTVAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSG 260

Query: 61  DKAKALAKALGYFQKMKGM---ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
              +A         ++KG     R +P+IVT+ IL+   A+ +   +V A+ +E+    +
Sbjct: 261 RVEEAF--------RLKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGI 312

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
            P+   YN ++  + + G   E   +   M S   K  ++T+NL+  +  K    +  E+
Sbjct: 313 TPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEK 372

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ---KMTAMKYTPSFITYECIIT 234
           +   ++ +        FNS++  +   R  G+ + V +   +M A    P+       I 
Sbjct: 373 ILDEMLLAGMMVHCSLFNSVVAWH--LRGTGRLDLVLRLIREMLARFLKPNDALMTACIQ 430

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
                     A EI+ ++   G  + V+T NA++   C      EA  + +   N GV  
Sbjct: 431 ELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVEL 490

Query: 295 DSSTYKLLYKAYTKAN-MKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           D  TY ++ +   KA+ M E +Q L   M + G  P+   F   L T+
Sbjct: 491 DRITYNIMIQGCCKASKMDEAIQ-LRDDMIKRGFKPDLFTFNIFLHTY 537



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 110/232 (47%), Gaps = 11/232 (4%)

Query: 25  GQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERC 82
           G+    + L  +M++ G +PD   Y  +I  +     KAK + KA  Y  ++   G+   
Sbjct: 541 GKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYC----KAKDMHKANEYLTELMKNGL--- 593

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +PN V YN L+    +  N+     +   +  + + P   TYN +M      G+++E+++
Sbjct: 594 RPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKA 653

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINY 201
           V ++      +  +I + ++I  + K    D+    FK  MHS+   P   T+ +++  Y
Sbjct: 654 VFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKE-MHSRGIPPNKMTYTTLMFAY 712

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            K+  + +A  +F +M ++   P  ++Y  +I+ +   D++ +  E   E+S
Sbjct: 713 SKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGFCEVDSLDKMVESPAEMS 764



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 82/186 (44%), Gaps = 36/186 (19%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI--TAHLHTRDKAKA----- 65
           IY+ LI   G+ G    A+ +   M+ +G +P P  YN+L+    H    ++ KA     
Sbjct: 599 IYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQC 658

Query: 66  ------------------------LAKALGYFQKM--KGMERCKPNIVTYNILLRACAQA 99
                                   + +A+ YF++M  +G+    PN +TY  L+ A +++
Sbjct: 659 IVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGI---PPNKMTYTTLMFAYSKS 715

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
            N ++ + LF E+    + PD  +YN ++  + +   + +M    + M S   K D  ++
Sbjct: 716 GNKEEASKLFDEMVSLGIVPDSVSYNTLISGFCEVDSLDKMVESPAEMSSQVLKQDGCSY 775

Query: 160 NLLIDS 165
           N  +D 
Sbjct: 776 NAFVDG 781


>gi|297849166|ref|XP_002892464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338306|gb|EFH68723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 555

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 153/323 (47%), Gaps = 13/323 (4%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + DT  Y+ +I  + KKG  R A+ L  +M  SG  PD   YN +I       +  +A+ 
Sbjct: 167 VPDTITYNMIIGNLCKKGHIRSALVLLEDMSLSGSPPDVITYNTVIRCMFDHGNAEQAIR 226

Query: 68  KALGYFQKMKGMERCKPNIVTYNILL----RACAQARNVDQVNALFKELHESILAPDIYT 123
                F K +    C P ++TY +L+    R C  AR +D    + +++      PDI T
Sbjct: 227 -----FWKDQLRNGCPPYMITYTVLVELVCRYCGSARAMD----VLEDMAVEGCYPDIVT 277

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN +++   + G ++E+  V+  + S+  + + +T+N L+ S    + +D++E++   + 
Sbjct: 278 YNSLVNYNCRRGNLEEVALVIQHILSHGLELNTVTYNTLLHSLCSNEYWDEVEEILNIMY 337

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
            +   PT+ T+N +I    KARL  +A   F +M   K  P  +TY  ++        V 
Sbjct: 338 QTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTLLGAMSKEGMVD 397

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A E+   L        + T N++++     GL  +A  L+ +  + G++PD  T + L 
Sbjct: 398 DAIELLGLLKSTSCLPGLITYNSVIDGLARKGLMKKALELYHHMLDAGISPDDITRRSLI 457

Query: 304 KAYTKANMKELVQKLLKRMEQNG 326
             + +AN+ E   ++LK     G
Sbjct: 458 YGFCRANLVEEASQVLKETSNRG 480



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/247 (19%), Positives = 97/247 (39%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+  + + L+R  A+   +D+   + + +  S   PD  TYN ++    K G I+    +
Sbjct: 133 PHFPSCSNLVRGLARIDQLDKAMVILRIMVMSGGVPDTITYNMIIGNLCKKGHIRSALVL 192

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L  M  +   PD+IT+N +I         ++  + +K  + +   P + T+  ++    +
Sbjct: 193 LEDMSLSGSPPDVITYNTVIRCMFDHGNAEQAIRFWKDQLRNGCPPYMITYTVLVELVCR 252

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
                +A  V + M      P  +TY  ++       N+     +   +   G ++   T
Sbjct: 253 YCGSARAMDVLEDMAVEGCYPDIVTYNSLVNYNCRRGNLEEVALVIQHILSHGLELNTVT 312

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N +L + C N    E + +    +     P   TY +L     KA +         +M 
Sbjct: 313 YNTLLHSLCSNEYWDEVEEILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQML 372

Query: 324 QNGIVPN 330
           +   +P+
Sbjct: 373 EQKCLPD 379



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 40/213 (18%)

Query: 44  PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD 103
           P    YN LI        KA+ L++A+ +F +M   ++C P+IVTYN LL A ++   VD
Sbjct: 343 PTVITYNILINGLC----KARLLSRAIDFFYQMLE-QKCLPDIVTYNTLLGAMSKEGMVD 397

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT----- 158
               L   L  +   P + TYN V+D   + G++K+   +   M      PD IT     
Sbjct: 398 DAIELLGLLKSTSCLPGLITYNSVIDGLARKGLMKKALELYHHMLDAGISPDDITRRSLI 457

Query: 159 ------------------------------FNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
                                         + L+I    K++  +   +V + ++ S  K
Sbjct: 458 YGFCRANLVEEASQVLKETSNRGNGIRGSTYRLVIQGLCKKREMEMAIEVVEIMLTSGCK 517

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           P    + +++    +  +  +A  + +K+T  K
Sbjct: 518 PDETIYTAIVKGVEEMGMGSEAVQLQKKLTQWK 550


>gi|297826989|ref|XP_002881377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327216|gb|EFH57636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 589

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 169/389 (43%), Gaps = 45/389 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ LI   G+K + + A  L+ ++  S C P    Y  LI A+      A  + KA
Sbjct: 167 DVICFNLLIDAYGQKFRFKEAESLYVQLLESRCVPTEDTYTLLIKAYC----MAGLIEKA 222

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAPDIYTYNGVM 128
                +M+      P++  YN  +    + + N +Q   +F+ +      P   TYN ++
Sbjct: 223 EAVLIEMQN-HHVSPSVTVYNAYIEGLMKRKGNTEQAIDVFQRMKRDRCKPTTETYNLMI 281

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL------ 182
           + YGK         +   M+S+QCKP+I T+  L++++ +    +K E++F+ L      
Sbjct: 282 NLYGKASKSYMSWKLFCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHI 341

Query: 183 -----------------MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
                             H   +P   ++N M+  YG+A L   AE VF++M  +   P+
Sbjct: 342 DSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPT 401

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
             ++  +++ Y    +V++   I  E+S+ G +     LN+ML  Y   G  T+ + +  
Sbjct: 402 MKSHMLLLSAYSRARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILA 461

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN-------------KR 332
              N   T D STY +L   Y KA   E +++L   +++    P+             K+
Sbjct: 462 EMENGPCTADISTYNILINIYGKAGFLERIEELFVELKERNFKPDVVTWTSRIGAYSRKK 521

Query: 333 FFLEALETFS---SSLAGSQSGSAKTDLT 358
            +++ LE F     S      G+AK  L+
Sbjct: 522 LYVKCLEIFEEMIDSGCAPDGGTAKVLLS 550



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 155/346 (44%), Gaps = 33/346 (9%)

Query: 13  IYSKLI-AVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           +Y+  I  +M +KG T  A+ +F  M+   C+P    YN +I  +     KA     +  
Sbjct: 240 VYNAYIEGLMKRKGNTEQAIDVFQRMKRDRCKPTTETYNLMINLY----GKASKSYMSWK 295

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE----------------- 114
            F +M+   +CKPNI TY  L+ A A+    ++   +F++L E                 
Sbjct: 296 LFCEMRS-HQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHIDSRAGYPYGAAEI 354

Query: 115 -SIL-----APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
            S++      PD  +YN ++DAYG+ G+  + E+V   MK     P + +  LL+ +Y +
Sbjct: 355 FSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSR 414

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
            +   K E + K +  +  +P     NSM+  YG+     K E +  +M     T    T
Sbjct: 415 ARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADIST 474

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
           Y  +I +YG    + R  E+F EL +      V T  + + AY    L  +   +FE   
Sbjct: 475 YNILINIYGKAGFLERIEELFVELKERNFKPDVVTWTSRIGAYSRKKLYVKCLEIFEEMI 534

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ----NGIVPN 330
           + G  PD  T K+L  A +  +  E V  +L+ M +    + +VPN
Sbjct: 535 DSGCAPDGGTAKVLLSACSSEDQVEQVTSVLRTMHKGVSVSSLVPN 580



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 150/302 (49%), Gaps = 25/302 (8%)

Query: 32  WLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALGYFQKMKGMERCKPNIVTY 89
           W+   +R S  +PD   +N LI A+       +A++L     Y Q ++   RC P   TY
Sbjct: 157 WI---LRRSSFQPDVICFNLLIDAYGQKFRFKEAESL-----YVQLLES--RCVPTEDTY 206

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN-GMIKEMESVLSRMK 148
            +L++A   A  +++  A+  E+    ++P +  YN  ++   K  G  ++   V  RMK
Sbjct: 207 TLLIKAYCMAGLIEKAEAVLIEMQNHHVSPSVTVYNAYIEGLMKRKGNTEQAIDVFQRMK 266

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
            ++CKP   T+NL+I+ YGK        ++F  +   + KP + T+ +++  + +  L  
Sbjct: 267 RDRCKPTTETYNLMINLYGKASKSYMSWKLFCEMRSHQCKPNICTYTALVNAFAREGLCE 326

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           KAE +F+++    +  S   Y      YG       A EIF  +  +G +   ++ N M+
Sbjct: 327 KAEEIFEQLQEDGHIDSRAGYP-----YG-------AAEIFSLMQHMGCEPDRASYNIMV 374

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           +AY   GL ++A+ +FE    +G+ P   ++ LL  AY++A      + ++K M +NG+ 
Sbjct: 375 DAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSRARDVTKCEAIVKEMSENGVE 434

Query: 329 PN 330
           P+
Sbjct: 435 PD 436



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 133/244 (54%), Gaps = 10/244 (4%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           +FS M++ GC PD + YN ++ A+     +A   + A   F++MK +    P + ++ +L
Sbjct: 354 IFSLMQHMGCEPDRASYNIMVDAY----GRAGLHSDAEAVFEEMKRL-GIAPTMKSHMLL 408

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           L A ++AR+V +  A+ KE+ E+ + PD +  N +++ YG+ G   +ME +L+ M++  C
Sbjct: 409 LSAYSRARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPC 468

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
             DI T+N+LI+ YGK    +++E++F  L     KP + T+ S I  Y + +L  K   
Sbjct: 469 TADISTYNILINIYGKAGFLERIEELFVELKERNFKPDVVTWTSRIGAYSRKKLYVKCLE 528

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL--NAMLEA 270
           +F++M      P   T + +++    C +  +  ++   L  + K + VS+L  N M ++
Sbjct: 529 IFEEMIDSGCAPDGGTAKVLLSA---CSSEDQVEQVTSVLRTMHKGVSVSSLVPNLMAKS 585

Query: 271 YCMN 274
             +N
Sbjct: 586 LTVN 589



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 107/255 (41%), Gaps = 59/255 (23%)

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           ++ +  +PD+I FNLLID+YG++  F + E ++  L+ S+  PT  T+  +I  Y  A L
Sbjct: 159 LRRSSFQPDVICFNLLIDAYGQKFRFKEAESLYVQLLESRCVPTEDTYTLLIKAYCMAGL 218

Query: 207 QGKAEY------------------------------------VFQKMTAMKYTPSFITYE 230
             KAE                                     VFQ+M   +  P+  TY 
Sbjct: 219 IEKAEAVLIEMQNHHVSPSVTVYNAYIEGLMKRKGNTEQAIDVFQRMKRDRCKPTTETYN 278

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF----EN 286
            +I +YG       + ++F E+        + T  A++ A+   GL  +A+ +F    E+
Sbjct: 279 LMINLYGKASKSYMSWKLFCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQED 338

Query: 287 SH-------------------NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
            H                   +MG  PD ++Y ++  AY +A +    + + + M++ GI
Sbjct: 339 GHIDSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGI 398

Query: 328 VPNKRFFLEALETFS 342
            P  +  +  L  +S
Sbjct: 399 APTMKSHMLLLSAYS 413



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 7/139 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT + + ++ + G+ GQ      + +EM N  C  D S YN LI  +     KA  L + 
Sbjct: 436 DTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIY----GKAGFLERI 491

Query: 70  LGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
              F ++K  ER  KP++VT+   + A ++ +   +   +F+E+ +S  APD  T   ++
Sbjct: 492 EELFVELK--ERNFKPDVVTWTSRIGAYSRKKLYVKCLEIFEEMIDSGCAPDGGTAKVLL 549

Query: 129 DAYGKNGMIKEMESVLSRM 147
            A      ++++ SVL  M
Sbjct: 550 SACSSEDQVEQVTSVLRTM 568


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 161/344 (46%), Gaps = 22/344 (6%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + + G+T+ A+ L   +     RP+  +Y+ +I +      K K +  A   +
Sbjct: 166 YGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMC----KDKLVNDAFDLY 221

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   +R  P++VTY+ L+        +     LF  +    + P++YT++ ++D + K
Sbjct: 222 CEMVS-KRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCK 280

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++E ++VL+ M     K D++T+N L+D Y   +  +K + +F  +      P + +
Sbjct: 281 EGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWS 340

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDE 251
           ++ MI  + K ++  +A  +F++M   +  P+ +TY  ++   G C +   S A E+ DE
Sbjct: 341 YSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVD--GLCKSGRTSCALELVDE 398

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G+   + T N++L+A C N    +A +L       G+ PD  TY +L     K   
Sbjct: 399 MHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGR 458

Query: 312 KELVQKLLKRMEQNGIVP-------------NKRFFLEALETFS 342
            +  QK+ + +   G  P             NK FF E L   S
Sbjct: 459 LDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLS 502



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 147/324 (45%), Gaps = 15/324 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI+     G+ + A+ LF+ M +    P+   ++ LI        K +     
Sbjct: 232 DVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCK-EGKVREAKNV 290

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L    K    +  K ++VTYN L+      + V++  +LF  + +  + PD+++Y+ +++
Sbjct: 291 LAVMMK----KNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMIN 346

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ----AFDKMEQVFKSLMHS 185
            + K  M+ E   +   M   Q  P+++T+N L+D   K      A + +++     MH 
Sbjct: 347 GFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDE-----MHD 401

Query: 186 KEKPT-LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
           + +P+ + T+NS++    K     KA  +  K+      P   TY  +I        +  
Sbjct: 402 RGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDD 461

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A+++F++L   G    + T  +++  +C  G   E   +     + G  P++ TY++L  
Sbjct: 462 AQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIH 521

Query: 305 AYTKANMKELVQKLLKRMEQNGIV 328
           +  + +  +  +KLL+ M   G++
Sbjct: 522 SLFEKDENDKAEKLLREMIARGLL 545



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 144/319 (45%), Gaps = 7/319 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +YS +I  M K      A  L+ EM +    PD   Y++LI+           L  A+  
Sbjct: 200 MYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFC----VVGKLKYAVDL 255

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F +M   +   PN+ T++IL+    +   V +   +   + +  +  D+ TYN +MD Y 
Sbjct: 256 FNRMIS-DNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYC 314

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTL 191
               + + +S+ + M      PD+ +++++I+ + K +  D+  ++F+  MH K+  P +
Sbjct: 315 LVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEE-MHCKQIFPNV 373

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+NS++    K+     A  +  +M       + ITY  I+      ++V +A  +  +
Sbjct: 374 VTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTK 433

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G    + T   ++   C  G   +A  +FE+    G +P+  TY  L   +     
Sbjct: 434 IKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGF 493

Query: 312 KELVQKLLKRMEQNGIVPN 330
            +    +L +M+ NG +PN
Sbjct: 494 FDEGLAMLSKMKDNGCIPN 512



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 32/211 (15%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA-------- 55
           QR    D   YS +I    K      AM LF EM      P+   YN+L+          
Sbjct: 331 QRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTS 390

Query: 56  -------HLHTRD----------------KAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
                   +H R                 K   + KA+    K+K  +  +P+I TY +L
Sbjct: 391 CALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKE-KGIQPDIFTYTVL 449

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +   +D    +F++L     +P+IYTY  +++ +   G   E  ++LS+MK N C
Sbjct: 450 INGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGC 509

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
            P+ IT+ +LI S  ++   DK E++ + ++
Sbjct: 510 IPNAITYEILIHSLFEKDENDKAEKLLREMI 540



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/318 (19%), Positives = 123/318 (38%), Gaps = 72/318 (22%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P  + +  +L +  +A+      +L +++  + + PD  T N +M+ + + G IK   SV
Sbjct: 56  PPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSV 115

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKR---------------QAFDKMEQV-----FKSLM 183
            +++      PD +TF +LI     +               Q F +++QV        L 
Sbjct: 116 FAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGF-QLDQVSYGTLINGLC 174

Query: 184 HSKE----------------KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
              E                +P +  ++++I +  K +L   A  ++ +M + + +P  +
Sbjct: 175 RVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVV 234

Query: 228 TYECIITMY---------------------------------GYCDN--VSRAREIFDEL 252
           TY  +I+ +                                 G+C    V  A+ +   +
Sbjct: 235 TYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVM 294

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            K    + V T N++++ YC+     +A  LF      GVTPD  +Y ++   + K  M 
Sbjct: 295 MKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMV 354

Query: 313 ELVQKLLKRMEQNGIVPN 330
           +   KL + M    I PN
Sbjct: 355 DEAMKLFEEMHCKQIFPN 372



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 95/233 (40%), Gaps = 6/233 (2%)

Query: 112 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171
           LH++   P    +  ++ +  K    +   S+  +M+ N  KPD IT NLL++ + +   
Sbjct: 49  LHKNNPIPPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGH 108

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
                 VF  ++     P   TF  +I          KA Y   K+ A  +    ++Y  
Sbjct: 109 IKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGT 168

Query: 232 IITMYGYCDNVSRAREIFDELSKL-GKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSH 288
           +I   G C  V   +     L ++ GK ++  V   + ++++ C + L  +A  L+    
Sbjct: 169 LIN--GLC-RVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMV 225

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           +  ++PD  TY  L   +      +    L  RM  + I PN   F   ++ F
Sbjct: 226 SKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGF 278


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 9/341 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           + K R    D+  Y   I+ M K+G+   A  +  +M+  G RP    YN LI  + +  
Sbjct: 251 LMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKG 310

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           +    L  A  Y  KM   E   P + TYN+L+ A      +D+ + + KE+ E  L PD
Sbjct: 311 N----LEMAFDYRDKMV-REGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPD 365

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TYN +++ Y + G +K+  ++   M S   +P  +T+  LI    KR    + + +F+
Sbjct: 366 SVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFE 425

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC- 239
            ++     P L  FN++I  +       +A  + ++M  MK  P  +T+  +  M G C 
Sbjct: 426 KIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTL--MQGRCR 483

Query: 240 -DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              V  ARE+ +E+   G      + N ++  Y   G   +A  + +   ++G  P   T
Sbjct: 484 EGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLT 543

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
           Y  L +   K    +  ++LLK M   GI PN   +L  +E
Sbjct: 544 YNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIE 584



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 151/340 (44%), Gaps = 17/340 (5%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M K +  I      + ++++  K  +T  A  L++EM     +     +N +I   L   
Sbjct: 146 MMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINV-LCKE 204

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAP 119
            K K   + +G  + +      KPN+VTYN ++   C++ R V+    +F  +    + P
Sbjct: 205 GKLKKAKEFIGLMEALG----IKPNVVTYNTIIHGYCSRGR-VEGARMIFDLMKCRGVKP 259

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR----QAFDKM 175
           D YTY   +    K G ++E   +L +MK    +P  +T+N LID Y  +     AFD  
Sbjct: 260 DSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYR 319

Query: 176 EQ-VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
           ++ V + LM     PT+ T+N +I          +A+ + ++M+     P  +TY  +I 
Sbjct: 320 DKMVREGLM-----PTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILIN 374

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
            Y  C NV +A  + DE+   G      T  +++      G   +AD LFE     G+ P
Sbjct: 375 GYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFP 434

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           D   +  L   +      +    +LK M+Q  +VP++  F
Sbjct: 435 DLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTF 474



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 112/236 (47%), Gaps = 9/236 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++  + D+  Y+ LI    + G  + A  L  EM + G +P    Y +LI    +   K 
Sbjct: 359 EKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLI----YVLSKR 414

Query: 64  KALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             + +A   F+K+  KG+    P+++ +N L+       N+D+  A+ KE+ +  + PD 
Sbjct: 415 GRMKQADDLFEKIVRKGI---FPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDE 471

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            T+N +M    + G ++    ++  MKS   KPD I++N LI  Y KR       +V   
Sbjct: 472 VTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDE 531

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           ++     PTL T+N++I    K      AE + ++M +   TP+  TY  +I   G
Sbjct: 532 MLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGIG 587



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 145/341 (42%), Gaps = 21/341 (6%)

Query: 9   ADTGIYSKLIA--VMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH---------- 56
            D  I SK +A  V+     ++ ++ L  E  NSG      V+N L  A           
Sbjct: 64  GDLDIKSKCLAMAVISHAPNSKPSLQLLKETINSGVYSIREVFNELGVARGVLGIKTYVL 123

Query: 57  ----LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL 112
               +    + K    A   F  MKG +   P++   N +L    ++   ++   L+ E+
Sbjct: 124 YDLLIRACCELKRGDDAFECFDMMKG-KGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEM 182

Query: 113 HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 172
               +   + T+N +++   K G +K+ +  +  M++   KP+++T+N +I  Y  R   
Sbjct: 183 FRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRV 242

Query: 173 DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 232
           +    +F  +     KP   T+ S I    K     +A  + +KM  +   P+ +TY  +
Sbjct: 243 EGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTL 302

Query: 233 ITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
           I   GYC+  N+  A +  D++ + G    VST N ++ A  ++    EAD + +     
Sbjct: 303 ID--GYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEK 360

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           G+ PDS TY +L   Y +    +    L   M   GI P +
Sbjct: 361 GLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTR 401


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 154/332 (46%), Gaps = 8/332 (2%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           Q  R     +  Y+ L+    +  +  LA+  F ++  +G R +  + N L+      + 
Sbjct: 102 QGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKR 161

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHE--SILA 118
             +AL   L    ++     C P++ +Y+ILL++ C Q ++  Q + L + + E  ++ +
Sbjct: 162 TDEALDILLHRTPELG----CVPDVFSYSILLKSLCDQGKS-GQADDLLRMMAEGGAVCS 216

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           P++  YN V+D + K G + +   +   M      PD++T+N ++ +  K +A DK E  
Sbjct: 217 PNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAF 276

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
            + +++ +  P   T+N++I  Y       +A  VF++M      P  +T   ++     
Sbjct: 277 LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 336

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              +  AR++FD ++  G++  V + N ML  Y   G   +   LF+     G+ PD  T
Sbjct: 337 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 396

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + +L KAY    M +    +   M  +G+ P+
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPD 428



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 148/354 (41%), Gaps = 44/354 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I    K+G    A  LF EM   G  PD   YN+++    H   KA+A+ KA  + 
Sbjct: 222 YNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVV----HALCKARAMDKAEAFL 277

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH-ESILA-------------- 118
           ++M   +R  PN  TYN L+   +      +   +FKE+   SIL               
Sbjct: 278 RQMVN-KRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 336

Query: 119 --------------------PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
                               PD+++YN +++ Y   G + +M  +   M  +   PD  T
Sbjct: 337 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 396

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           FN+LI +Y      DK   +F  +     KP + T+ ++I    +      A   F +M 
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 456

Query: 219 AMKYTPSFITYECIITMYGYCDNVS--RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
                P    Y C+I   G+C + S  +A+E+  E+   G  + +   ++++   C  G 
Sbjct: 457 DQGVAPDKYAYNCLIQ--GFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR 514

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +A  +F+ + N+G+ PD+  Y +L   Y      E   ++   M   GI PN
Sbjct: 515 VMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 568



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 141/296 (47%), Gaps = 13/296 (4%)

Query: 41  GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM-KGMERCKPNIVTYNILLRACAQA 99
           GC PD   Y+ L+ +     D+ K+  +A    + M +G   C PN+V YN ++    + 
Sbjct: 177 GCVPDVFSYSILLKSLC---DQGKS-GQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKE 232

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
            +V++   LFKE+ +  + PD+ TYN V+ A  K   + + E+ L +M + +  P+  T+
Sbjct: 233 GDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTY 292

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM---IINYGKARLQGKAEYVFQK 216
           N LI  Y     + +  +VFK +      P + T + +   +  YGK +   +A  VF  
Sbjct: 293 NNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIK---EARDVFDT 349

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M      P   +Y  ++  Y     +    ++FD +   G      T N +++AY   G+
Sbjct: 350 MAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGM 409

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKLLKRMEQNGIVPNK 331
             +A ++F    + GV PD  TY+ +  A  +   M + ++K  + ++Q G+ P+K
Sbjct: 410 LDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQ-GVAPDK 464



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 132/325 (40%), Gaps = 5/325 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++   + D    S L+  + K G+ + A  +F  M   G  PD   YN ++  +      
Sbjct: 316 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYA----T 371

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L      F  M G +   P+  T+N+L++A A    +D+   +F E+ +  + PD+ 
Sbjct: 372 KGCLVDMTDLFDLMLG-DGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVV 430

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  V+ A  + G + +     ++M      PD   +N LI  +    +  K +++   +
Sbjct: 431 TYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEI 490

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           M++     +  F+S+I N  K      A+ +F     +   P  + Y  ++  Y     +
Sbjct: 491 MNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKM 550

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +FD +   G +  V     ++  YC  G   E   LF      G+ P +  Y ++
Sbjct: 551 EKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSII 610

Query: 303 YKAYTKANMKELVQKLLKRMEQNGI 327
                +A      +     M ++GI
Sbjct: 611 IDGLFQAGRTVPAKVKFHEMTESGI 635



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 137/333 (41%), Gaps = 40/333 (12%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF  M   G  PD   +N LI A+ +       L KA+  F +M+     KP++VTY  +
Sbjct: 381 LFDLMLGDGIAPDFYTFNVLIKAYAN----CGMLDKAMIIFNEMRD-HGVKPDVVTYRTV 435

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ- 151
           + A  +   +D     F ++ +  +APD Y YN ++  +  +G + + + ++S + +N  
Sbjct: 436 IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGM 495

Query: 152 --------------CK--------------------PDIITFNLLIDSYGKRQAFDKMEQ 177
                         CK                    PD + +++L+D Y      +K  +
Sbjct: 496 HLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALR 555

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           VF +++ +  +P +  + +++  Y K     +   +F++M      PS I Y  II    
Sbjct: 556 VFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLF 615

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
                  A+  F E+++ G  M + T N +L     N    EA  LF+    M V  +  
Sbjct: 616 QAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINII 675

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           T   +     +    E  + L   + ++ +VP+
Sbjct: 676 TLNTMIDGMFQTRRVEEAKDLFASISRSRLVPS 708



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 9/218 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +YS L+      G+   A+ +F  M ++G  P+  VY  L+  +     K   + + 
Sbjct: 533 DAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYC----KIGRIDEG 588

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           L  F++M  +G+   KP+ + Y+I++    QA         F E+ ES +A DI TYN V
Sbjct: 589 LSLFREMLQRGI---KPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIV 645

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +    KN    E   +   +++   K +IIT N +ID   + +  ++ + +F S+  S+ 
Sbjct: 646 LRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRL 705

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
            P++ T++ MI N  K  L  +AE +F  M      P+
Sbjct: 706 VPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPN 743



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 115/261 (44%), Gaps = 9/261 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   +S +I  + K G+   A  +F    N G  PD  VY+ L+  +         + KA
Sbjct: 498 DIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLV----GKMEKA 553

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           L  F  M   G+E   PN+V Y  L+    +   +D+  +LF+E+ +  + P    Y+ +
Sbjct: 554 LRVFDAMVSAGIE---PNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSII 610

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D   + G     +     M  +    DI T+N+++    K + FD+   +FK L     
Sbjct: 611 IDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNV 670

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           K  + T N+MI    + R   +A+ +F  ++  +  PS +TY  +IT       V  A +
Sbjct: 671 KINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAED 730

Query: 248 IFDELSKLGKDMKVSTLNAML 268
           +F  +   G +     LN ++
Sbjct: 731 MFSSMQNAGCEPNSRLLNHVV 751



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 146/367 (39%), Gaps = 48/367 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  +IA + + G+   AM  F++M + G  PD   YN LI          KA  K 
Sbjct: 428 DVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKA--KE 485

Query: 70  LGYFQKMKGMERCKPNIVTYN-ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           L       GM     +IV ++ I+   C   R +D  N +F       L PD   Y+ +M
Sbjct: 486 LISEIMNNGMHL---DIVFFSSIINNLCKLGRVMDAQN-IFDLTVNVGLHPDAVVYSMLM 541

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D Y   G +++   V   M S   +P+++ +  L++ Y K    D+   +F+ ++    K
Sbjct: 542 DGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIK 601

Query: 189 P-----------------TLP------------------TFNSMIINYGKARLQGKAEYV 213
           P                 T+P                  T+N ++    K R   +A ++
Sbjct: 602 PSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFL 661

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F+++ AM    + IT   +I        V  A+++F  +S+      V T + M+     
Sbjct: 662 FKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIK 721

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
            GL  EA+ +F +  N G  P+S     + +   K N        L ++++      + F
Sbjct: 722 EGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDE------RNF 775

Query: 334 FLEALET 340
            LE L T
Sbjct: 776 SLEHLTT 782



 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 76/196 (38%), Gaps = 30/196 (15%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--D 61
           QR     T +YS +I  + + G+T  A   F EM  SG   D   YN ++      R  D
Sbjct: 597 QRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFD 656

Query: 62  KAKALAKAL-----------------GYFQKMKGME-----------RCKPNIVTYNILL 93
           +A  L K L                 G FQ  +  E           R  P++VTY+I++
Sbjct: 657 EAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMI 716

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
               +   V++   +F  +  +   P+    N V+    K   I    + LS++      
Sbjct: 717 TNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFS 776

Query: 154 PDIITFNLLIDSYGKR 169
            + +T  LL+D +  +
Sbjct: 777 LEHLTTMLLVDLFSSK 792



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 37/197 (18%), Positives = 81/197 (41%), Gaps = 9/197 (4%)

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA-EY 212
           P   T+ +L+D   +    +     F  L+ +  +  +   N ++  + +A+   +A + 
Sbjct: 109 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDI 168

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +  +   +   P   +Y   I +   CD   ++ +  D L  + +   V + N +     
Sbjct: 169 LLHRTPELGCVPDVFSYS--ILLKSLCDQ-GKSGQADDLLRMMAEGGAVCSPNVVAYNTV 225

Query: 273 MNGLPTEADL-----LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           ++G   E D+     LF+     G+ PD  TY  +  A  KA   +  +  L++M    +
Sbjct: 226 IDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 285

Query: 328 VPNKRFFLEALETFSSS 344
           +PN   +   +  +SS+
Sbjct: 286 LPNNWTYNNLIYGYSST 302


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 154/332 (46%), Gaps = 8/332 (2%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           Q  R     +  Y+ L+    +  +  LA+  F ++  +G R +  + N L+      + 
Sbjct: 105 QGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKR 164

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHE--SILA 118
             +AL   L    ++     C P++ +Y+ILL++ C Q ++  Q + L + + E  ++ +
Sbjct: 165 TDEALDILLHRTPELG----CVPDVFSYSILLKSLCDQGKS-GQADDLLRMMAEGGAVCS 219

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           P++  YN V+D + K G + +   +   M      PD++T+N ++ +  K +A DK E  
Sbjct: 220 PNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAF 279

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
            + +++ +  P   T+N++I  Y       +A  VF++M      P  +T   ++     
Sbjct: 280 LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 339

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              +  AR++FD ++  G++  V + N ML  Y   G   +   LF+     G+ PD  T
Sbjct: 340 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 399

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + +L KAY    M +    +   M  +G+ P+
Sbjct: 400 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPD 431



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 148/354 (41%), Gaps = 44/354 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I    K+G    A  LF EM   G  PD   YN+++    H   KA+A+ KA  + 
Sbjct: 225 YNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVV----HALCKARAMDKAEAFL 280

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH-ESILA-------------- 118
           ++M   +R  PN  TYN L+   +      +   +FKE+   SIL               
Sbjct: 281 RQMVN-KRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 339

Query: 119 --------------------PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
                               PD+++YN +++ Y   G + +M  +   M  +   PD  T
Sbjct: 340 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 399

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           FN+LI +Y      DK   +F  +     KP + T+ ++I    +      A   F +M 
Sbjct: 400 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 459

Query: 219 AMKYTPSFITYECIITMYGYCDNVS--RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
                P    Y C+I   G+C + S  +A+E+  E+   G  + +   ++++   C  G 
Sbjct: 460 DQGVAPDKYAYNCLIQ--GFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR 517

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +A  +F+ + N+G+ PD+  Y +L   Y      E   ++   M   GI PN
Sbjct: 518 VMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 571



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 136/295 (46%), Gaps = 11/295 (3%)

Query: 41  GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM-KGMERCKPNIVTYNILLRACAQA 99
           GC PD   Y+ L+ +     D+ K+  +A    + M +G   C PN+V YN ++    + 
Sbjct: 180 GCVPDVFSYSILLKSLC---DQGKS-GQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKE 235

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
            +V++   LFKE+ +  + PD+ TYN V+ A  K   + + E+ L +M + +  P+  T+
Sbjct: 236 GDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTY 295

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM---IINYGKARLQGKAEYVFQK 216
           N LI  Y     + +  +VFK +      P + T + +   +  YGK +   +A  VF  
Sbjct: 296 NNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIK---EARDVFDT 352

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M      P   +Y  ++  Y     +    ++FD +   G      T N +++AY   G+
Sbjct: 353 MAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGM 412

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             +A ++F    + GV PD  TY+ +  A  +    +   +   +M   G+ P+K
Sbjct: 413 LDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDK 467



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 132/325 (40%), Gaps = 5/325 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++   + D    S L+  + K G+ + A  +F  M   G  PD   YN ++  +      
Sbjct: 319 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYA----T 374

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L      F  M G +   P+  T+N+L++A A    +D+   +F E+ +  + PD+ 
Sbjct: 375 KGCLVDMTDLFDLMLG-DGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVV 433

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  V+ A  + G + +     ++M      PD   +N LI  +    +  K +++   +
Sbjct: 434 TYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEI 493

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           M++     +  F+S+I N  K      A+ +F     +   P  + Y  ++  Y     +
Sbjct: 494 MNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKM 553

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +FD +   G +  V     ++  YC  G   E   LF      G+ P +  Y ++
Sbjct: 554 EKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSII 613

Query: 303 YKAYTKANMKELVQKLLKRMEQNGI 327
                +A      +     M ++GI
Sbjct: 614 IDGLFEAGRTVPAKMKFHEMTESGI 638



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 134/328 (40%), Gaps = 11/328 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  +IA + + G+   AM  F++M + G  PD   YN LI          KA  K 
Sbjct: 431 DVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKA--KE 488

Query: 70  LGYFQKMKGMERCKPNIVTYN-ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           L       GM     +IV ++ I+   C   R +D  N +F       L PD   YN +M
Sbjct: 489 LISEIMNNGMHL---DIVFFSSIINNLCKLGRVMDAQN-IFDLTVNVGLHPDAVVYNMLM 544

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D Y   G +++   V   M S   +P+++ +  L++ Y K    D+   +F+ ++    K
Sbjct: 545 DGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIK 604

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAR 246
           P+   ++ +I    +A     A+  F +MT         TY   I + G   N     A 
Sbjct: 605 PSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYN--IVLRGLFKNRCFDEAI 662

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +F EL  +   + + TLN M++         EA  LF +     + P   TY ++    
Sbjct: 663 FLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNL 722

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFF 334
            K  + E  + +   M+  G  PN R  
Sbjct: 723 IKEGLVEEAEDMFSSMQNAGCEPNSRLL 750



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 137/333 (41%), Gaps = 40/333 (12%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF  M   G  PD   +N LI A+ +       L KA+  F +M+     KP++VTY  +
Sbjct: 384 LFDLMLGDGIAPDFYTFNVLIKAYAN----CGMLDKAMIIFNEMRD-HGVKPDVVTYRTV 438

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ- 151
           + A  +   +D     F ++ +  +APD Y YN ++  +  +G + + + ++S + +N  
Sbjct: 439 IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGM 498

Query: 152 --------------CK--------------------PDIITFNLLIDSYGKRQAFDKMEQ 177
                         CK                    PD + +N+L+D Y      +K  +
Sbjct: 499 HLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALR 558

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           VF +++ +  +P +  + +++  Y K     +   +F++M      PS I Y  II    
Sbjct: 559 VFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLF 618

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
                  A+  F E+++ G  M + T N +L     N    EA  LF+    M V  +  
Sbjct: 619 EAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINII 678

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           T   +     +    E  + L   + ++ +VP+
Sbjct: 679 TLNTMIDGMFQTRRVEEAKDLFASISRSRLVPS 711



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 91/200 (45%), Gaps = 10/200 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  L+    K G+    + LF EM   G +P   +Y+ +I           A  K     
Sbjct: 575 YGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMT 634

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +    M+ C     TYNI+LR   + R  D+   LFKEL    +  +I T N ++D   +
Sbjct: 635 ESGIAMDIC-----TYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQ 689

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              ++E + + + +  ++  P ++T++++I +  K    ++ E +F S+ ++  +P    
Sbjct: 690 TRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEP---- 745

Query: 194 FNSMIINYGKARLQGKAEYV 213
            NS ++N+    L  K E V
Sbjct: 746 -NSRLLNHVVRELLKKNEIV 764



 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 76/196 (38%), Gaps = 30/196 (15%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--D 61
           QR     T +YS +I  + + G+T  A   F EM  SG   D   YN ++      R  D
Sbjct: 600 QRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFD 659

Query: 62  KAKALAKAL-----------------GYFQKMKGME-----------RCKPNIVTYNILL 93
           +A  L K L                 G FQ  +  E           R  P++VTY+I++
Sbjct: 660 EAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMI 719

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
               +   V++   +F  +  +   P+    N V+    K   I    + LS++      
Sbjct: 720 TNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFS 779

Query: 154 PDIITFNLLIDSYGKR 169
            + +T  LL+D +  +
Sbjct: 780 LEHLTAMLLVDLFSSK 795



 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 37/197 (18%), Positives = 81/197 (41%), Gaps = 9/197 (4%)

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA-EY 212
           P   T+ +L+D   +    +     F  L+ +  +  +   N ++  + +A+   +A + 
Sbjct: 112 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDI 171

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +  +   +   P   +Y   I +   CD   ++ +  D L  + +   V + N +     
Sbjct: 172 LLHRTPELGCVPDVFSYS--ILLKSLCDQ-GKSGQADDLLRMMAEGGAVCSPNVVAYNTV 228

Query: 273 MNGLPTEADL-----LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           ++G   E D+     LF+     G+ PD  TY  +  A  KA   +  +  L++M    +
Sbjct: 229 IDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 288

Query: 328 VPNKRFFLEALETFSSS 344
           +PN   +   +  +SS+
Sbjct: 289 LPNNWTYNNLIYGYSST 305


>gi|414879860|tpg|DAA56991.1| TPA: hypothetical protein ZEAMMB73_837882 [Zea mays]
          Length = 677

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 166/378 (43%), Gaps = 55/378 (14%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT---RDKAKAL 66
           D  ++S LI +  + G    A+ LFS +R +G RPD   YNA + A+  +   RD  + L
Sbjct: 211 DLILFSNLIHLALRGGDAPKALALFSRLRAAGIRPDLKAYNAAVAAYCKSDLLRDAKRML 270

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHE-SILAPDIYTY 124
                    M   +   P+  TY+ +L A A+  R++  V+ LF  +   + + PDI  +
Sbjct: 271 ------LHDMPA-DGVAPDAETYSPILAALARRGRHLAAVS-LFSHMRAVARVKPDISVF 322

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N +++AYG+  + +E + +   M+     P ++T+N ++  YG    F +   +F  LM 
Sbjct: 323 NIILNAYGQLDLAREADRLFWSMRRAGVPPSVVTYNTMLRVYGDAGLFGEAVHLF-DLMR 381

Query: 185 SKE----------KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
           S            KP + T+N+MI  YGK+    KA  + Q+M A+   P  ITY  I++
Sbjct: 382 STSDGNGGAGSSVKPNVVTYNTMITIYGKSLEDEKAGRLVQEMQAIGVQPDAITYSTILS 441

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT---------------- 278
           ++     + RA  +F++L + G ++       M+ AY   GL +                
Sbjct: 442 IWVKAGKLDRAARLFEKLREAGTEIDPVLYQTMVVAYERAGLVSQAKRLLRDLKDPEGIP 501

Query: 279 ---------------EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
                          EA  LF  + N G   DSS ++ +   Y K      V ++   M 
Sbjct: 502 KETAIKILASAGRLEEAAWLFRRAVNTGEIKDSSVHRAMMDLYAKNRRHRNVIEVFDEMR 561

Query: 324 QNGIVPNKRFFLEALETF 341
           + G +P+      A+  +
Sbjct: 562 KLGQLPDSEIIATAMNAY 579



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 156/340 (45%), Gaps = 16/340 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   YS L+A + + G    A+     M +    PD  +++ LI   L   D 
Sbjct: 169 RERGVTPDAFSYSTLLAALTRAGHLDHALTFLPLMEDDAVAPDLILFSNLIHLALRGGDA 228

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDI 121
            KALA     F +++     +P++  YN  + A C      D    L  ++    +APD 
Sbjct: 229 PKALA----LFSRLRAAG-IRPDLKAYNAAVAAYCKSDLLRDAKRMLLHDMPADGVAPDA 283

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            TY+ ++ A  + G      S+ S M++  + KPDI  FN+++++YG+     + +++F 
Sbjct: 284 ETYSPILAALARRGRHLAAVSLFSHMRAVARVKPDISVFNIILNAYGQLDLAREADRLFW 343

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---------YTPSFITYEC 231
           S+  +   P++ T+N+M+  YG A L G+A ++F  M +             P+ +TY  
Sbjct: 344 SMRRAGVPPSVVTYNTMLRVYGDAGLFGEAVHLFDLMRSTSDGNGGAGSSVKPNVVTYNT 403

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           +IT+YG      +A  +  E+  +G      T + +L  +   G    A  LFE     G
Sbjct: 404 MITIYGKSLEDEKAGRLVQEMQAIGVQPDAITYSTILSIWVKAGKLDRAARLFEKLREAG 463

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
              D   Y+ +  AY +A +    ++LL+ ++    +P +
Sbjct: 464 TEIDPVLYQTMVVAYERAGLVSQAKRLLRDLKDPEGIPKE 503



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 2/228 (0%)

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           ++ YN+LLR+  +A  +   + L  E+ E  + PD ++Y+ ++ A  + G +    + L 
Sbjct: 142 LIPYNLLLRSACRAGELRLASGLLLEMRERGVTPDAFSYSTLLAALTRAGHLDHALTFLP 201

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
            M+ +   PD+I F+ LI    +     K   +F  L  +  +P L  +N+ +  Y K+ 
Sbjct: 202 LMEDDAVAPDLILFSNLIHLALRGGDAPKALALFSRLRAAGIRPDLKAYNAAVAAYCKSD 261

Query: 206 LQGKAE-YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK-DMKVST 263
           L   A+  +   M A    P   TY  I+           A  +F  +  + +    +S 
Sbjct: 262 LLRDAKRMLLHDMPADGVAPDAETYSPILAALARRGRHLAAVSLFSHMRAVARVKPDISV 321

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
            N +L AY    L  EAD LF +    GV P   TY  + + Y  A +
Sbjct: 322 FNIILNAYGQLDLAREADRLFWSMRRAGVPPSVVTYNTMLRVYGDAGL 369



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 9/173 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS ++++  K G+   A  LF ++R +G   DP +Y  ++ A+    ++A  +++A
Sbjct: 432 DAITYSTILSIWVKAGKLDRAARLFEKLREAGTEIDPVLYQTMVVAY----ERAGLVSQA 487

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               + +K      P  +     ++  A A  +++   LF+    +    D   +  +MD
Sbjct: 488 KRLLRDLK-----DPEGIPKETAIKILASAGRLEEAAWLFRRAVNTGEIKDSSVHRAMMD 542

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            Y KN   + +  V   M+     PD       +++YGK + FDK   +++++
Sbjct: 543 LYAKNRRHRNVIEVFDEMRKLGQLPDSEIIATAMNAYGKLKEFDKAAALYQAM 595


>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
           [Vitis vinifera]
 gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 154/342 (45%), Gaps = 9/342 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K   Y+A T  Y+ L+ V GK G    A+ +  EM  + C PD   YN L+ A++    +
Sbjct: 307 KSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYV----R 362

Query: 63  AKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           A    +   +   M  KG+    PN +TY  ++ A  +A   D+  + F+++ ES   P+
Sbjct: 363 AGFHEEGADFIDTMIRKGI---MPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPN 419

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TYN ++   GK   ++EM  +L  M+SN C P+ +T+N ++   G +     + +VF+
Sbjct: 420 VCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFR 479

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +     +P   TFN++I  YG+   Q     ++++M    +TP   TY  ++       
Sbjct: 480 EMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRG 539

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           +   A  +  ++   G     ++ + ML  Y   G     + + E  +N  + P     +
Sbjct: 540 DWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLR 599

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            L  A  K      +++  +   ++G  P+   F   L  F+
Sbjct: 600 TLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFA 641



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 148/329 (44%), Gaps = 16/329 (4%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D   ++ ++    + G+   A+ +F +MR +G  P    YN ++  +       ++ 
Sbjct: 205 YSLDVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVY---GKMGRSW 261

Query: 67  AKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            K LG   +M+  G+E    +  T + ++ AC +   +D+    F  L         +TY
Sbjct: 262 NKILGLLDEMRSNGLEF---DEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTY 318

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++  +GK G+  E  S+L  M+ N C PD++T+N L+ +Y +    ++      +++ 
Sbjct: 319 NSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIR 378

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P   T+ ++I  YGKA  + KA   F++M      P+  TY  I+ M G     SR
Sbjct: 379 KGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLG---KKSR 435

Query: 245 AREIFDELSKL---GKDMKVSTLNAMLEAYCMN-GLPTEADLLFENSHNMGVTPDSSTYK 300
             E+ D L  +   G      T N ML A C N G+    + +F    + G  P+  T+ 
Sbjct: 436 LEEMIDMLCDMRSNGCAPNSVTWNTML-AMCGNKGMHKYVNRVFREMKSCGFEPNRDTFN 494

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVP 329
            L  AY +   +  V K+ + M + G  P
Sbjct: 495 ALIGAYGRCGSQIDVVKMYEEMIKAGFTP 523



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 152/388 (39%), Gaps = 75/388 (19%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I   GK G+   A+  F +M+ SGC P+   YNA+    L    K   L + +   
Sbjct: 388 YTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAI----LGMLGKKSRLEEMIDML 443

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             M+    C PN VT+N +L  C        VN +F+E+      P+  T+N ++ AYG+
Sbjct: 444 CDMRS-NGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGR 502

Query: 134 NG-------MIKEM----------------------------ESVLSRMKSNQCKPDIIT 158
            G       M +EM                            ESV+  MKS   KP+  +
Sbjct: 503 CGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETS 562

Query: 159 FNLLIDSYGK-----------------------------------RQAFDKMEQVFKSLM 183
           ++L+++ Y K                                   R+A   ME+ F+   
Sbjct: 563 YSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFC 622

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
               KP L  FNSM+  + K ++  +A  + + +      P  +TY  ++ MY       
Sbjct: 623 KHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECW 682

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           +  EI   + K G    + + N +++ +C  GL  EA          G+ P   TY    
Sbjct: 683 KGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFV 742

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNK 331
             Y+   M   V++++  M Q+   PN+
Sbjct: 743 AGYSGKGMFSEVEEVISYMIQHDCRPNE 770



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 132/298 (44%), Gaps = 9/298 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI   G+ G     + ++ EM  +G  P  + YNAL+ A L  R   +A A+++   
Sbjct: 493 FNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNA-LARRGDWEA-AESVILD 550

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K KG    KPN  +Y+++L   A+  N   +  + +E++   + P       ++ A  K
Sbjct: 551 MKSKGF---KPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFK 607

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              +  ME        +  KPD++ FN ++  + K + +D+  ++ + +  S  +P L T
Sbjct: 608 RRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVT 667

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDE 251
           +NS++  Y +     K E + + +      P  ++Y  +I   G+C    +  A     E
Sbjct: 668 YNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIK--GFCRQGLMQEAIRTLSE 725

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           ++  G    + T N  +  Y   G+ +E + +          P+  TYK++   Y K 
Sbjct: 726 MTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKG 783



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 126/273 (46%), Gaps = 35/273 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK----- 68
           Y+ L+  + ++G    A  +  +M++ G +P+ + Y+ ++  +    +  + + K     
Sbjct: 528 YNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGN-GRGIEKIEEEI 586

Query: 69  ---------------ALGYFQK--MKGMERC---------KPNIVTYNILLRACAQARNV 102
                           L  F++  + GMER          KP++V +N +L   A+ +  
Sbjct: 587 YNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMY 646

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           D+ + + + + ES L PD+ TYN +MD Y + G   + E +L  ++ +  KPD++++N +
Sbjct: 647 DRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTV 706

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           I  + ++    +  +    +  S  +P + T+N+ +  Y    +  + E V   M     
Sbjct: 707 IKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDC 766

Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
            P+ +TY+ ++   GYC    + +E  D +S +
Sbjct: 767 RPNELTYKIVVD--GYCKG-KKYKEAMDFVSNI 796



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 108/247 (43%), Gaps = 1/247 (0%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-IKEMESV 143
           ++  +  +L A ++    ++   +F+++ ++ L+P + TYN ++D YGK G    ++  +
Sbjct: 208 DVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGL 267

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L  M+SN  + D  T + +I + G+    D+  + F  L          T+NS++  +GK
Sbjct: 268 LDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGK 327

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A +  +A  + ++M      P  +TY  ++  Y          +  D + + G      T
Sbjct: 328 AGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAIT 387

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
              ++ AY   G   +A   F      G  P+  TY  +     K +  E +  +L  M 
Sbjct: 388 YTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMR 447

Query: 324 QNGIVPN 330
            NG  PN
Sbjct: 448 SNGCAPN 454



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 104/224 (46%), Gaps = 1/224 (0%)

Query: 108 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
           L  E+     + D+  +  ++ AY + G  +   ++  +M+     P ++T+N+++D YG
Sbjct: 196 LLDEISVEEYSLDVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYG 255

Query: 168 KR-QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
           K  ++++K+  +   +  +  +    T +++I   G+  L  +A   F ++ +  Y    
Sbjct: 256 KMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGT 315

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
            TY  ++ ++G     S A  I  E+ K      + T N ++ AY   G   E     + 
Sbjct: 316 FTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDT 375

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
               G+ P++ TY  +  AY KA  ++      ++M+++G VPN
Sbjct: 376 MIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPN 419



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 7/167 (4%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D  +++ ++++  K      A  +   +R SG +PD   YN+L+  +    +  K  
Sbjct: 626 YKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKG- 684

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYN 125
            + L   QK  G    KP++V+YN +++  C Q    + +  L  E+  S + P I TYN
Sbjct: 685 EEILKGIQKSGG----KPDLVSYNTVIKGFCRQGLMQEAIRTL-SEMTISGIRPCIVTYN 739

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 172
             +  Y   GM  E+E V+S M  + C+P+ +T+ +++D Y K + +
Sbjct: 740 TFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKY 786



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 91/187 (48%), Gaps = 5/187 (2%)

Query: 34  FSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 93
           F E    G +PD  ++N++++  +  ++K    A  +    +  G++   P++VTYN L+
Sbjct: 618 FQEFCKHGYKPDLVLFNSMLS--IFAKNKMYDRAHEMLRLIRESGLQ---PDLVTYNSLM 672

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
              A+     +   + K + +S   PD+ +YN V+  + + G+++E    LS M  +  +
Sbjct: 673 DMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIR 732

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P I+T+N  +  Y  +  F ++E+V   ++    +P   T+  ++  Y K +   +A   
Sbjct: 733 PCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEAMDF 792

Query: 214 FQKMTAM 220
              +T M
Sbjct: 793 VSNITEM 799


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 158/340 (46%), Gaps = 27/340 (7%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS------GCRPDPSVYNALITA--HLHTRD 61
           D   Y  LI  +   G   +A+ L  EM N        C+P+   YN ++     +   D
Sbjct: 173 DVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGRED 232

Query: 62  KAKALAKALGYFQKMK--GM-------ERCKPNIVTYNILLRACAQARNVDQVNALFKEL 112
           +AK L      F++MK  GM       +  +P++VT+N+L+    +   V +   L   +
Sbjct: 233 EAKQL------FEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVM 286

Query: 113 HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 172
            ES + PD+ TYN +++ +   G +     +   M S  C+PD+I++N+LI+ Y K    
Sbjct: 287 IESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKV 346

Query: 173 DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 232
           ++  +++  ++   ++P + T++S++     A     A+ +F  M A     +  TY   
Sbjct: 347 EEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYG-- 404

Query: 233 ITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
           I + G C N  +  A ++F EL      +++  LN +++  C  G    A  LFE   N 
Sbjct: 405 IFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNE 464

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           G  P+  TY ++   + +    +    L+++ME NG  P+
Sbjct: 465 GHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPD 504



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ LI      G    A  LF  M + GC PD   YN LI  +     K   + 
Sbjct: 292 VPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGY----SKTLKVE 347

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A+  + +M  + + +PN++TY+ LL+    A  VD    LF  +    +A + YTY   
Sbjct: 348 EAMKLYNEMLLVGK-RPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIF 406

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D   KN  + E   + + +KS+  K +I   N LID   K    +   ++F+ L +   
Sbjct: 407 LDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGH 466

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
           +P + T+  MI  + +     KA  + QKM A   TP  ITY
Sbjct: 467 EPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITY 508



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 134/321 (41%), Gaps = 40/321 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ LI  + K+G+   A  L   M  SG  PD   YN+LI       D    L  A
Sbjct: 259 DMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGD----LNSA 314

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F  M   + C+P++++YN+L+   ++   V++   L+ E+      P++ TY+ ++ 
Sbjct: 315 RELFVSMPS-KGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLK 373

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
                G + + + + S MK++    +  T+ + +D   K     +  ++F  L  S  K 
Sbjct: 374 GIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKL 433

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +   N +I    KA     A  +F+K++   + P+ +TY                    
Sbjct: 434 EIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTY-------------------- 473

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
                            M+  +C  G   +A++L +     G TPD  TY  L + + ++
Sbjct: 474 ---------------TIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYES 518

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
           N  E V +LL RM Q  + P+
Sbjct: 519 NKLEEVVQLLHRMAQKDVSPD 539



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 121/316 (38%), Gaps = 23/316 (7%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           L S   +S   P P+   A    H  T +       AL +F  M       P++ ++N L
Sbjct: 19  LSSLFTHSSAIPSPNPQIAFFLRHCKTGNVTAT--HALHFFHLMM-RSTPTPSLSSFNHL 75

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           L   A+ ++  QV +L+ ++  S L+ D  T N +++       ++E  +  + +     
Sbjct: 76  LSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGY 135

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            P+I+T+N LI          +  ++F  +      P + T+ ++I           A  
Sbjct: 136 SPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALK 195

Query: 213 VFQKMT------AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG---------- 256
           + Q+M        +   P+ ITY  I+           A+++F+E+   G          
Sbjct: 196 LHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQG 255

Query: 257 --KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
              DM   T N +++  C  G   EA  L       G+ PD  TY  L + +        
Sbjct: 256 LQPDM--VTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNS 313

Query: 315 VQKLLKRMEQNGIVPN 330
            ++L   M   G  P+
Sbjct: 314 ARELFVSMPSKGCEPD 329


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 141/318 (44%), Gaps = 5/318 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  +  +G  + A+ +  +MR +GC P+   YN L+ A     +  +A  + L   
Sbjct: 160 YNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRA--ERLVDM 217

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +  G+   KPN+VT+N ++    +A  ++    +F E+ +  LAPD  +YN ++  Y K
Sbjct: 218 MREGGL---KPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCK 274

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G   E  SV + M      PD++TF  LI    K    ++   + + +     +    T
Sbjct: 275 VGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEIT 334

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           F ++I  + K      A    ++M   +  PS + Y  +I  Y     +  ARE+  E+ 
Sbjct: 335 FTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREME 394

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V T + +L AYC NG    A  L +     GV PD+ TY  L +   +     
Sbjct: 395 AKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLG 454

Query: 314 LVQKLLKRMEQNGIVPNK 331
               L K M   G+ P++
Sbjct: 455 DAHVLFKNMISLGLQPDE 472



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 131/287 (45%), Gaps = 8/287 (2%)

Query: 46  PSV--YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD 103
           PSV  YNA++ A         +L  A  +F  M   +   PN+ TYNIL+RA     +  
Sbjct: 121 PSVLAYNAVLLAL-----SDASLPSARRFFDSMLS-DGVAPNVYTYNILVRALCGRGHRK 174

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +  ++ +++  +   P+  TYN ++ A+ + G +   E ++  M+    KP+++TFN ++
Sbjct: 175 EALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVV 234

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           +   K    +   +VF  ++     P   ++N+++  Y K     +A  VF +MT     
Sbjct: 235 NGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIM 294

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
           P  +T+  +I +     N+ RA  +  E+ + G  M   T  A+++ +C  G   +A L 
Sbjct: 295 PDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLA 354

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                   + P    Y  L   Y      +  ++L++ ME  G+ P+
Sbjct: 355 VREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPD 401



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 151/344 (43%), Gaps = 24/344 (6%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++  + D   ++ LI VM K G    A+ L  EMR  G + +   + ALI        K 
Sbjct: 290 RKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFC----KK 345

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L  AL   ++M+   R +P++V YN L+        +D+   L +E+    + PD+ T
Sbjct: 346 GFLDDALLAVREMRQC-RIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVT 404

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ ++ AY KNG       +  +M  N   PD IT++ LI    + +       +FK+++
Sbjct: 405 YSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMI 464

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
               +P   T+ S+I  + K     +A  +  +M      P  +TY  +I          
Sbjct: 465 SLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTK 524

Query: 244 RAREI---------------FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
            A+ +               +D L +  ++ ++ ++ A+L+ +CM GL  EAD ++++  
Sbjct: 525 EAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSIL 584

Query: 289 NMGVTPDSSTYKLLYKAYTKAN--MKELVQKLLKRMEQNGIVPN 330
           +     D S Y +L   + +    MK L     K+M Q G  PN
Sbjct: 585 DRNWNLDGSVYSVLIHGHCREGNVMKAL--SFHKQMLQCGFAPN 626



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 143/318 (44%), Gaps = 9/318 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ ++  + K G+   A  +F EM   G  PD   YN L+  +     K     +AL  F
Sbjct: 230 FNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYC----KVGCSHEALSVF 285

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  KG+    P++VT+  L+    +A N+++   L +E+ E  L  +  T+  ++D +
Sbjct: 286 AEMTRKGI---MPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGF 342

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G + +    +  M+  + +P ++ +N LI+ Y      D+  ++ + +     KP +
Sbjct: 343 CKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDV 402

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+++++  Y K      A  + Q+M      P  ITY  +I +      +  A  +F  
Sbjct: 403 VTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKN 462

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +  LG      T  ++++ +C  G    A  L +     GV PD  TY +L    +K+  
Sbjct: 463 MISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSAR 522

Query: 312 KELVQKLLKRMEQNGIVP 329
            +  Q+LL ++     VP
Sbjct: 523 TKEAQRLLFKLYHEEPVP 540



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 111/258 (43%), Gaps = 36/258 (13%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+++ YN +L A + A ++      F  +    +AP++YTYN ++ A    G  KE  SV
Sbjct: 121 PSVLAYNAVLLALSDA-SLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSV 179

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L  M+   C P+ +T+N L+ ++ +    D+ E++   +     KP L TFNS++    K
Sbjct: 180 LRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICK 239

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A   G+ E                                 AR++FDE+ K G      +
Sbjct: 240 A---GRME--------------------------------DARKVFDEMVKEGLAPDGVS 264

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N ++  YC  G   EA  +F      G+ PD  T+  L     KA   E    L++ M 
Sbjct: 265 YNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMR 324

Query: 324 QNGIVPNKRFFLEALETF 341
           + G+  N+  F   ++ F
Sbjct: 325 ERGLQMNEITFTALIDGF 342


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 152/326 (46%), Gaps = 14/326 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI+   + G+   AM  FS+M + G  P+ +VY++LI       D    L KA  + 
Sbjct: 445 YSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGD----LVKAKEFI 500

Query: 74  QKM--KGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
            +M  KG+ R  PNIV ++ ++ + C + R +D  +     +H     P I T+N ++D 
Sbjct: 501 SEMMSKGLHR--PNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGD-RPTIVTFNSLIDG 557

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           Y   G +++   VL  M S   +PD++T N L+  Y K    D    +F+ ++H K KPT
Sbjct: 558 YCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPT 617

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREI 248
             T+N ++    +A     A+ +F +M          TY+  I + G C N     A  +
Sbjct: 618 TVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYK--ILLKGLCRNDLTDEAITL 675

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F +L  +     ++ LN M+ A        EA+ LF      G+ P+ STY ++ +   K
Sbjct: 676 FHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLK 735

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
               E    +   ME++G  P+ R  
Sbjct: 736 EGSVEEADTMFSSMEKSGCAPSSRLL 761



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 138/310 (44%), Gaps = 5/310 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM-KGMERCKPNIVTYNI 91
           L   M    C PD   YN +I + L    +++   +AL   Q+M K   RC P++V++N 
Sbjct: 182 LLHRMSELSCVPDAISYNTVIKS-LCGDSRSQ---EALDMVQRMAKEGGRCSPDVVSFNT 237

Query: 92  LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151
           ++    +   V +   LF E+ +  + PD+ TYN ++DA  K   + + E VL +M    
Sbjct: 238 VIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKG 297

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
            +PD +T+N +I  Y     + +  ++F+ +      P   TF+S + +  K      AE
Sbjct: 298 VEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAE 357

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
            +FQ MT   + P  ++Y  ++  Y      +    +F  ++  G       +N ++ A+
Sbjct: 358 EIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAH 417

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
              G+  EA L+F      GV P+  TY  L  A+ +        +   +M   GI PN 
Sbjct: 418 AKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNT 477

Query: 332 RFFLEALETF 341
             +   +  F
Sbjct: 478 AVYHSLIHGF 487



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 130/268 (48%), Gaps = 9/268 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ +I    K+G+   A  LF+EM   G  PD   YN+++ A      KA+A+ KA
Sbjct: 231 DVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALC----KARAMDKA 286

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
               ++M  KG+E   P+ VTYN ++   + + +  +   +F+++    L PD  T++  
Sbjct: 287 EFVLRQMVDKGVE---PDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSF 343

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           M +  K+G  K+ E +   M +    PDI+++++L+  Y     F  M  +F S+     
Sbjct: 344 MSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGI 403

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
                  N +I  + K  +  +A  VF +M      P+ +TY  +I+ +     ++ A E
Sbjct: 404 VSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAME 463

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            F ++  +G +   +  ++++  +CM+G
Sbjct: 464 KFSQMISIGIEPNTAVYHSLIHGFCMHG 491



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 112/251 (44%), Gaps = 3/251 (1%)

Query: 83  KPNIVTYNILLRACAQARNVDQ-VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           K   +     L+    A+  D+ V+ L   + E    PD  +YN V+ +   +   +E  
Sbjct: 156 KTGTIQATTFLKCLCHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEAL 215

Query: 142 SVLSRM--KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
            ++ RM  +  +C PD+++FN +I  + K+    K   +F  ++     P + T+NS++ 
Sbjct: 216 DMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVD 275

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
              KAR   KAE+V ++M      P  +TY  II  Y    +   + ++F +++  G   
Sbjct: 276 ALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIP 335

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
              T ++ + + C +G   +A+ +F+     G  PD  +Y +L   Y        +  L 
Sbjct: 336 DTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLF 395

Query: 320 KRMEQNGIVPN 330
             M   GIV N
Sbjct: 396 HSMADKGIVSN 406



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 158/366 (43%), Gaps = 47/366 (12%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL---HTR 60
           Q+  + D G Y+ ++  + K      A ++  +M + G  PD   YNA+I  +    H +
Sbjct: 260 QKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWK 319

Query: 61  DKAKALAKALGYFQKM--KGM------------ERCK--------------------PNI 86
           + AK        F+KM  KG+              CK                    P+I
Sbjct: 320 ESAK-------MFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDI 372

Query: 87  VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 146
           V+Y+ILL   A       +N LF  + +  +  + +  N ++ A+ K GM+ E   V + 
Sbjct: 373 VSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTE 432

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAF-DKMEQVFKSLMHSKEKPTLPTFNSMIINYG-KA 204
           M+    +P+++T++ LI ++ +     D ME+ F  ++    +P    ++S+I  +    
Sbjct: 433 MQGQGVRPNVVTYSTLISAFCRMGRLADAMEK-FSQMISIGIEPNTAVYHSLIHGFCMHG 491

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
            L    E++ + M+   + P+ + +  II        V  A+++F+ +  +G    + T 
Sbjct: 492 DLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTF 551

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N++++ YC+ G   +A  + +   ++G+ PD  T   L   Y K+   +    L + M  
Sbjct: 552 NSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLH 611

Query: 325 NGIVPN 330
             + P 
Sbjct: 612 KKVKPT 617



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 131/327 (40%), Gaps = 19/327 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +S +I  +  +G+   A  +F+ + + G RP    +N+LI  +         + KA G  
Sbjct: 516 FSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYC----LVGKMEKAFGVL 571

Query: 74  QKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             M   G+E   P++VT N L+    ++  +D    LF+E+    + P   TYN V+D  
Sbjct: 572 DAMVSVGIE---PDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGL 628

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G     + +   M  +    DI T+ +L+    +    D+   +F  L     K  +
Sbjct: 629 LRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDI 688

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
              N+MI    K R + +A  +F  ++     P+  TY  +I       +V  A  +F  
Sbjct: 689 TILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSS 748

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + K G       LN ++      G   +A           ++ ++ST  LL   ++    
Sbjct: 749 MEKSGCAPSSRLLNDIIRMLLQKGDIVKAGYYMSKVDGTIISLEASTTSLLMSLFSSKG- 807

Query: 312 KELVQKLLKRMEQNGIVPNK-RFFLEA 337
                   K  EQ   +P K +FF  A
Sbjct: 808 --------KHREQIKFLPAKYQFFYGA 826



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 98/211 (46%), Gaps = 13/211 (6%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T  Y+ ++  + + G+T  A  +F EM +SG   D   Y  L+   L   D      +A+
Sbjct: 618 TVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKG-LCRNDLTD---EAI 673

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
             F K+  M+ CK +I   N ++ A  + R  ++ N LF  +  S L P++ TY  ++  
Sbjct: 674 TLFHKLGAMD-CKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRN 732

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK----MEQVFKSLMHSK 186
             K G ++E +++ S M+ + C P     N +I    ++    K    M +V  +++ S 
Sbjct: 733 LLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDIVKAGYYMSKVDGTII-SL 791

Query: 187 EKPTLPTFNSMIINYGKARLQGK---AEYVF 214
           E  T     S+  + GK R Q K   A+Y F
Sbjct: 792 EASTTSLLMSLFSSKGKHREQIKFLPAKYQF 822



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 64/145 (44%), Gaps = 8/145 (5%)

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD-----M 259
           R     + +  +M+ +   P  I+Y  +I     C + SR++E  D + ++ K+      
Sbjct: 174 RTDEAVDVLLHRMSELSCVPDAISYNTVIK--SLCGD-SRSQEALDMVQRMAKEGGRCSP 230

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            V + N ++  +   G  ++A  LF      GV PD  TY  +  A  KA   +  + +L
Sbjct: 231 DVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVL 290

Query: 320 KRMEQNGIVPNKRFFLEALETFSSS 344
           ++M   G+ P+   +   +  +S S
Sbjct: 291 RQMVDKGVEPDGVTYNAIIHGYSCS 315


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 142/319 (44%), Gaps = 12/319 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ +I+ M + G    A  L   M  +G  PD   Y ALI        +   +  A G F
Sbjct: 278 FNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLC----RVGRIEDARGVF 333

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           +KM  +GM   KPN V + IL+ A  +  + + +  L +E+ E  + PD  TYN +++  
Sbjct: 334 EKMCGRGM---KPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGL 390

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            +   +K    ++  M+S   +PD +T+  LID Y K +  D   ++ ++++        
Sbjct: 391 CRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDE 450

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+ ++I    KA     AE V  +M      P   TY  +I  +    +V     +  E
Sbjct: 451 VTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKE 510

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G+   V T N ++  +C  G    AD+L     N+GV+PD  TY +L   + K   
Sbjct: 511 MQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGK 570

Query: 312 KELVQKLLKRMEQNGIVPN 330
              +++L       G VP+
Sbjct: 571 VTDIEEL---KSAKGTVPD 586



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 144/307 (46%), Gaps = 17/307 (5%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK--ALAKALGYFQKM--KGMERCKPN 85
           A   + ++ ++G  P+  ++N L+      RD  +   LA A   F +M  +G+ R    
Sbjct: 224 ACAFYLQLLDAGLPPEAKLFNVLM------RDLVRLGELASAQNVFDEMQSRGVRR---T 274

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           +V++N ++    +A ++D    L + + E+ + PD+YTY  ++    + G I++   V  
Sbjct: 275 VVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFE 334

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
           +M     KP+ + F +LID++ K+   + M ++ + +     +P   T+N+++    +AR
Sbjct: 335 KMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRAR 394

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVST 263
               A  +  +M +    P  +TY  +I   GYC  + +  A EI   +   G  +   T
Sbjct: 395 DLKSASGIVVEMRSAGLRPDTVTYTTLID--GYCKEEELDMAMEIKQNMVAEGVGLDEVT 452

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
             A++      G   +A+ +       G+ PD++TY ++  A+ +    +   +LLK M+
Sbjct: 453 YTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQ 512

Query: 324 QNGIVPN 330
             G  P 
Sbjct: 513 NKGRKPG 519



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 100/227 (44%), Gaps = 7/227 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +++ LI    KKG     + L  EMR  G RPD   YNA++      RD    L  A G 
Sbjct: 347 VFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARD----LKSASGI 402

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +M+     +P+ VTY  L+    +   +D    + + +    +  D  TY  ++    
Sbjct: 403 VVEMRSAG-LRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLS 461

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G   + E VL  M     +PD  T+ ++ID++ ++       ++ K + +   KP + 
Sbjct: 462 KAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVV 521

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           T+N ++  + K      A+ +   M  +  +P  ITY   I + G+C
Sbjct: 522 TYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYN--ILLDGHC 566



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 104/231 (45%), Gaps = 8/231 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   Y+ ++  + +    + A  +  EMR++G RPD   Y  LI  +     K
Sbjct: 372 RERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYC----K 427

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            + L  A+   Q M   E    + VTY  L+   ++A        +  E+ E+ L PD  
Sbjct: 428 EEELDMAMEIKQNMVA-EGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNT 486

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  V+DA+ + G +K    +L  M++   KP ++T+N++++ + K       + +  ++
Sbjct: 487 TYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAM 546

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           ++    P   T+N ++  + K    GK   + +  +A    P    Y  I+
Sbjct: 547 INIGVSPDDITYNILLDGHCK---HGKVTDIEELKSAKGTVPDLGVYTSIV 594


>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
          Length = 821

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 154/342 (45%), Gaps = 9/342 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K   Y+A T  Y+ L+ V GK G    A+ +  EM  + C PD   YN L+ A++    +
Sbjct: 307 KSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYV----R 362

Query: 63  AKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           A    +   +   M  KG+    PN +TY  ++ A  +A   D+  + F+++ ES   P+
Sbjct: 363 AGFHEEGADFIDTMIRKGI---MPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPN 419

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TYN ++   GK   ++EM  +L  M+SN C P+ +T+N ++   G +     + +VF+
Sbjct: 420 VCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFR 479

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +     +P   TFN++I  YG+   Q     ++++M    +TP   TY  ++       
Sbjct: 480 EMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRG 539

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           +   A  +  ++   G     ++ + ML  Y   G     + + E  +N  + P     +
Sbjct: 540 DWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLR 599

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            L  A  K      +++  +   ++G  P+   F   L  F+
Sbjct: 600 TLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFA 641



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 148/329 (44%), Gaps = 16/329 (4%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D   ++ ++    + G+   A+ +F +MR +G  P    YN ++  +       ++ 
Sbjct: 205 YSLDVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVY---GKMGRSW 261

Query: 67  AKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            K LG   +M+  G+E    +  T + ++ AC +   +D+    F  L         +TY
Sbjct: 262 NKILGLLDEMRSNGLEF---DEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTY 318

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++  +GK G+  E  S+L  M+ N C PD++T+N L+ +Y +    ++      +++ 
Sbjct: 319 NSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIR 378

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P   T+ ++I  YGKA  + KA   F++M      P+  TY  I+ M G     SR
Sbjct: 379 KGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLG---KKSR 435

Query: 245 AREIFDELSKL---GKDMKVSTLNAMLEAYCMN-GLPTEADLLFENSHNMGVTPDSSTYK 300
             E+ D L  +   G      T N ML A C N G+    + +F    + G  P+  T+ 
Sbjct: 436 LEEMIDMLCDMRSNGCAPNSVTWNTML-AMCGNKGMHKYVNRVFREMKSCGFEPNRDTFN 494

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVP 329
            L  AY +   +  V K+ + M + G  P
Sbjct: 495 ALIGAYGRCGSQIDVVKMYEEMIKAGFTP 523



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 152/388 (39%), Gaps = 75/388 (19%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I   GK G+   A+  F +M+ SGC P+   YNA+    L    K   L + +   
Sbjct: 388 YTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAI----LGMLGKKSRLEEMIDML 443

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             M+    C PN VT+N +L  C        VN +F+E+      P+  T+N ++ AYG+
Sbjct: 444 CDMRS-NGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGR 502

Query: 134 NG-------MIKEM----------------------------ESVLSRMKSNQCKPDIIT 158
            G       M +EM                            ESV+  MKS   KP+  +
Sbjct: 503 CGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETS 562

Query: 159 FNLLIDSYGK-----------------------------------RQAFDKMEQVFKSLM 183
           ++L+++ Y K                                   R+A   ME+ F+   
Sbjct: 563 YSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFC 622

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
               KP L  FNSM+  + K ++  +A  + + +      P  +TY  ++ MY       
Sbjct: 623 KHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECW 682

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           +  EI   + K G    + + N +++ +C  GL  EA          G+ P   TY    
Sbjct: 683 KGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFV 742

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNK 331
             Y+   M   V++++  M Q+   PN+
Sbjct: 743 AGYSGKGMFSEVEEVISYMIQHDCRPNE 770



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 132/298 (44%), Gaps = 9/298 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI   G+ G     + ++ EM  +G  P  + YNAL+ A L  R   +A A+++   
Sbjct: 493 FNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNA-LARRGDWEA-AESVILD 550

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K KG    KPN  +Y+++L   A+  N   +  + +E++   + P       ++ A  K
Sbjct: 551 MKSKGF---KPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFK 607

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              +  ME        +  KPD++ FN ++  + K + +D+  ++ + +  S  +P L T
Sbjct: 608 RRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVT 667

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDE 251
           +NS++  Y +     K E + + +      P  ++Y  +I   G+C    +  A     E
Sbjct: 668 YNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIK--GFCRQGLMQEAIRTLSE 725

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           ++  G    + T N  +  Y   G+ +E + +          P+  TYK++   Y K 
Sbjct: 726 MTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKG 783



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 126/273 (46%), Gaps = 35/273 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK----- 68
           Y+ L+  + ++G    A  +  +M++ G +P+ + Y+ ++  +    +  + + K     
Sbjct: 528 YNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGN-GRGIEKIEEEI 586

Query: 69  ---------------ALGYFQK--MKGMERC---------KPNIVTYNILLRACAQARNV 102
                           L  F++  + GMER          KP++V +N +L   A+ +  
Sbjct: 587 YNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMY 646

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           D+ + + + + ES L PD+ TYN +MD Y + G   + E +L  ++ +  KPD++++N +
Sbjct: 647 DRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTV 706

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           I  + ++    +  +    +  S  +P + T+N+ +  Y    +  + E V   M     
Sbjct: 707 IKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDC 766

Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
            P+ +TY+ ++   GYC    + +E  D +S +
Sbjct: 767 RPNELTYKIVVD--GYCKG-KKYKEAMDFVSNI 796



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 108/247 (43%), Gaps = 1/247 (0%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-IKEMESV 143
           ++  +  +L A ++    ++   +F+++ ++ L+P + TYN ++D YGK G    ++  +
Sbjct: 208 DVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGL 267

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L  M+SN  + D  T + +I + G+    D+  + F  L          T+NS++  +GK
Sbjct: 268 LDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGK 327

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A +  +A  + ++M      P  +TY  ++  Y          +  D + + G      T
Sbjct: 328 AGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAIT 387

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
              ++ AY   G   +A   F      G  P+  TY  +     K +  E +  +L  M 
Sbjct: 388 YTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMR 447

Query: 324 QNGIVPN 330
            NG  PN
Sbjct: 448 SNGCAPN 454



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 104/224 (46%), Gaps = 1/224 (0%)

Query: 108 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
           L  E+     + D+  +  ++ AY + G  +   ++  +M+     P ++T+N+++D YG
Sbjct: 196 LLDEISVEEYSLDVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYG 255

Query: 168 KR-QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
           K  ++++K+  +   +  +  +    T +++I   G+  L  +A   F ++ +  Y    
Sbjct: 256 KMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGT 315

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
            TY  ++ ++G     S A  I  E+ K      + T N ++ AY   G   E     + 
Sbjct: 316 FTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDT 375

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
               G+ P++ TY  +  AY KA  ++      ++M+++G VPN
Sbjct: 376 MIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPN 419



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 7/167 (4%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D  +++ ++++  K      A  +   +R SG +PD   YN+L+  +    +  K  
Sbjct: 626 YKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKG- 684

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYN 125
            + L   QK  G    KP++V+YN +++  C Q    + +  L  E+  S + P I TYN
Sbjct: 685 EEILKGIQKSGG----KPDLVSYNTVIKGFCRQGLMQEAIRTL-SEMTISGIRPCIVTYN 739

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 172
             +  Y   GM  E+E V+S M  + C+P+ +T+ +++D Y K + +
Sbjct: 740 TFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKY 786



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 91/187 (48%), Gaps = 5/187 (2%)

Query: 34  FSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 93
           F E    G +PD  ++N++++  +  ++K    A  +    +  G++   P++VTYN L+
Sbjct: 618 FQEFCKHGYKPDLVLFNSMLS--IFAKNKMYDRAHEMLRLIRESGLQ---PDLVTYNSLM 672

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
              A+     +   + K + +S   PD+ +YN V+  + + G+++E    LS M  +  +
Sbjct: 673 DMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIR 732

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P I+T+N  +  Y  +  F ++E+V   ++    +P   T+  ++  Y K +   +A   
Sbjct: 733 PCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEAMDF 792

Query: 214 FQKMTAM 220
              +T M
Sbjct: 793 VSNITEM 799


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 164/335 (48%), Gaps = 11/335 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG-CRPDPSVYNALITAHLHTRD 61
           ++R+++ D   Y  LI  + K G+TR A+ L  ++      RPD  +Y A+I +      
Sbjct: 151 RKRFHL-DQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFC---- 205

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           K K +  A   + +M  +++  PN+VT+N L+        + +   L  E+  + + P++
Sbjct: 206 KDKLVIDAYDLYSEMI-VKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNV 264

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           YT+N ++D   K G +K+  SVLS M     +P+++T+  L+D Y   +  +K + VF +
Sbjct: 265 YTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNT 324

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           +      P + +++ MI    K ++  +A  +F++M     TP+ +TY  +I   G C +
Sbjct: 325 ISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLID--GLCKS 382

Query: 242 --VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             +S   ++ DE++  G+   + T N++L   C N    +A  L     + G+ PD STY
Sbjct: 383 GRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTY 442

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
             L     K    +  Q++ + +   G   N R +
Sbjct: 443 TTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMY 477



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 128/300 (42%), Gaps = 9/300 (3%)

Query: 25  GQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP 84
           GQ + A+ L +EM  +   P+   +N LI   L    + K     L    K +G+E   P
Sbjct: 243 GQLKEAVGLLNEMSLNNVNPNVYTFNILIDG-LCKEGEVKKATSVLSVMIK-QGVE---P 297

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           N+VTY  L+      + V++   +F  +    + P++++Y+ +++   KN M+ E   + 
Sbjct: 298 NVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLF 357

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             M      P+ +T++ LID   K      +  +   + +  +   + T+NS++    K 
Sbjct: 358 KEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKN 417

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVS 262
               KA  +  KM      P   TY  ++   G C N  +  A+ I+ +L   G  + + 
Sbjct: 418 HQVDKAIALLTKMKDEGIQPDMSTYTTLVD--GLCKNGRLKDAQRIYQDLLCKGYPLNIR 475

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
               M+   C  G   EA  L     + G  PD+ TY+ L  A  K N      KLL+ M
Sbjct: 476 MYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREM 535



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 7/207 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I  + K      A+ LF EM      P+   Y++LI        K+  ++      
Sbjct: 337 YSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLC----KSGRISDVWDLI 392

Query: 74  QKMKGMERCKP-NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            ++    R +P NI+TYN LL    +   VD+  AL  ++ +  + PD+ TY  ++D   
Sbjct: 393 DEINN--RGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLC 450

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           KNG +K+ + +   +       +I  + ++I+   K   FD+   +   +  +   P   
Sbjct: 451 KNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAV 510

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTA 219
           T+ ++I    K    GKA  + ++M A
Sbjct: 511 TYETLISALFKNNKNGKAVKLLREMIA 537



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/303 (17%), Positives = 120/303 (39%), Gaps = 40/303 (13%)

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L  A+  F  +  M    P I  +N +L +  +  +     +  +++    + P+++T+N
Sbjct: 33  LDDAVSSFNHILHMNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFN 92

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY---GK-RQAFDKMEQVFKS 181
            +++ +     +    S+++++     +PD +T N L+      GK ++A +  + V + 
Sbjct: 93  ILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRK 152

Query: 182 LMHSKE--------------------------------KPTLPTFNSMIINYGKARLQGK 209
             H  +                                +P +  + ++I ++ K +L   
Sbjct: 153 RFHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVID 212

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAM 267
           A  ++ +M   K  P+ +T+  +I  YG+C    +  A  + +E+S    +  V T N +
Sbjct: 213 AYDLYSEMIVKKIYPNVVTFNSLI--YGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNIL 270

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           ++  C  G   +A  +       GV P+  TY  L   Y         + +   +   G+
Sbjct: 271 IDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGV 330

Query: 328 VPN 330
            PN
Sbjct: 331 TPN 333


>gi|168052517|ref|XP_001778696.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669911|gb|EDQ56489.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 799

 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 159/374 (42%), Gaps = 33/374 (8%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH---- 56
           M+ Q+ Y A T IY+ +I +  +  +   A  LF EM+   C+PD   YNAL+  H    
Sbjct: 77  MKNQKCYRARTDIYNCMIWLHARHQRADQARGLFYEMKVWRCKPDVETYNALMNVHGRAG 136

Query: 57  -------------------LHTRDKAKALAKALGYF-QKMKGMERCK--------PNIVT 88
                                +R     L  A G   Q  K +E CK        P+++T
Sbjct: 137 QWRWALQIFDDMLQAPKPIAPSRSSYNNLINACGSSGQWFKALEICKRMTDNGVGPDLMT 196

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM- 147
           YNI+L A           A +  L    +  D Y++N +++   K G  ++  ++   M 
Sbjct: 197 YNIILSAFKSGGQPRHAVAYYDHLISKKVPLDRYSHNIILNCLTKLGRFEDAINLFKEMR 256

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           K N C+PD++TFN L+  Y       K ++ F  ++     PT+ TFN+++  Y    + 
Sbjct: 257 KMNGCEPDVVTFNALLHVYALCGQITKAQETFDMMIGEGMAPTIVTFNTLLGAYASQGMY 316

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            +A  V   +   K+ P  ++Y  ++  +G      +A+E+FD + +  +   + T N +
Sbjct: 317 TEALQVVGLLVKAKFEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGL 376

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           ++AY   G    A  L  +     + P+  T   L+ A  +A   E V+ +    +   I
Sbjct: 377 MDAYASAGKYERARELLHDMAEARIEPNVVTICSLFAACARARCPEKVRDVFHEAKVRQI 436

Query: 328 VPNKRFFLEALETF 341
             N   F  A+  +
Sbjct: 437 ALNVPAFNAAITAY 450



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 141/326 (43%), Gaps = 37/326 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---------------HLH 58
           Y+ LI   G  GQ   A+ +   M ++G  PD   YN +++A               HL 
Sbjct: 162 YNNLINACGSSGQWFKALEICKRMTDNGVGPDLMTYNIILSAFKSGGQPRHAVAYYDHLI 221

Query: 59  TRD----------------KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
           ++                 K      A+  F++M+ M  C+P++VT+N LL   A    +
Sbjct: 222 SKKVPLDRYSHNIILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNALLHVYALCGQI 281

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
            +    F  +    +AP I T+N ++ AY   GM  E   V+  +   + +PD+++++ L
Sbjct: 282 TKAQETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSL 341

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           ++++GK    +K ++VF  +     KP L TFN ++  Y  A    +A  +   M   + 
Sbjct: 342 LNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDMAEARI 401

Query: 223 TPSFITYECIITMYGYCDNV---SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
            P+ +T   I +++  C       + R++F E       + V   NA + AY   G   E
Sbjct: 402 EPNVVT---ICSLFAACARARCPEKVRDVFHEAKVRQIALNVPAFNAAITAYIEAGQFDE 458

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKA 305
           A  L E      + P+  T+ LL  A
Sbjct: 459 AKALLEVMEEQNLRPNGVTFLLLINA 484



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 167/390 (42%), Gaps = 73/390 (18%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRN-SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQK 75
           ++  + K G+   A+ LF EMR  +GC PD   +NAL    LH       + KA   F  
Sbjct: 235 ILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNAL----LHVYALCGQITKAQETFDM 290

Query: 76  MKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG 135
           M G E   P IVT+N LL A A      +   +   L ++   PD+ +Y+ +++A+GK G
Sbjct: 291 MIG-EGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSLLNAFGKAG 349

Query: 136 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL---- 191
             ++ + V   MK    KP+++TFN L+D+Y     +++  ++   +  ++ +P +    
Sbjct: 350 YPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDMAEARIEPNVVTIC 409

Query: 192 -------------------------------PTFNSMIINYGKARLQGKAEYVFQKMTAM 220
                                          P FN+ I  Y +A    +A+ + + M   
Sbjct: 410 SLFAACARARCPEKVRDVFHEAKVRQIALNVPAFNAAITAYIEAGQFDEAKALLEVMEEQ 469

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
              P+ +T+  +I   G   +   AR ++D++  LG  + V   +A++ A+  +G+  EA
Sbjct: 470 NLRPNGVTFLLLINAAGSLGDYREARTLYDKMVDLGIPLTVEPCSALINAFAKHGMYNEA 529

Query: 281 DLLFEN------------------SHNM--------------GVTPDSSTYKLLYKAYTK 308
             +F++                  ++ M              G+TPDS  +  L+ A  K
Sbjct: 530 RTIFDDMRKAGCKANVVTYTSLMIAYRMYDDAQLACEEMVAAGITPDSIAFGTLFVALNK 589

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           AN  E V ++ K     GI+ +   + E L
Sbjct: 590 ANRSEKVLQIEKSSRARGILFDDVAYTETL 619



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 162/336 (48%), Gaps = 11/336 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGC-RPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +  LI+ + + G    ++ +F+ M+N  C R    +YN +I   LH R +    A+  G 
Sbjct: 54  FPALISEITRTGALEHSLRVFNWMKNQKCYRARTDIYNCMI--WLHARHQRADQAR--GL 109

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI--LAPDIYTYNGVMDA 130
           F +MK + RCKP++ TYN L+    +A        +F ++ ++   +AP   +YN +++A
Sbjct: 110 FYEMK-VWRCKPDVETYNALMNVHGRAGQWRWALQIFDDMLQAPKPIAPSRSSYNNLINA 168

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
            G +G   +   +  RM  N   PD++T+N+++ ++ K     +    +   + SK+ P 
Sbjct: 169 CGSSGQWFKALEICKRMTDNGVGPDLMTYNIILSAF-KSGGQPRHAVAYYDHLISKKVPL 227

Query: 191 LPTFNSMIIN-YGKARLQGKAEYVFQKMTAMK-YTPSFITYECIITMYGYCDNVSRAREI 248
               +++I+N   K      A  +F++M  M    P  +T+  ++ +Y  C  +++A+E 
Sbjct: 228 DRYSHNIILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNALLHVYALCGQITKAQET 287

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           FD +   G    + T N +L AY   G+ TEA  +          PD  +Y  L  A+ K
Sbjct: 288 FDMMIGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSLLNAFGK 347

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           A   E  Q++   M+Q    PN   F   ++ ++S+
Sbjct: 348 AGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASA 383



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 147/325 (45%), Gaps = 8/325 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ L+ V    GQ   A   F  M   G  P    +N L+ A+       +AL + 
Sbjct: 264 DVVTFNALLHVYALCGQITKAQETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEAL-QV 322

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +G   K K     +P++V+Y+ LL A  +A   ++   +F  + +    P++ T+NG+MD
Sbjct: 323 VGLLVKAK----FEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMD 378

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           AY   G  +    +L  M   + +P+++T   L  +  + +  +K+  VF      +   
Sbjct: 379 AYASAGKYERARELLHDMAEARIEPNVVTICSLFAACARARCPEKVRDVFHEAKVRQIAL 438

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +P FN+ I  Y +A    +A+ + + M      P+ +T+  +I   G   +   AR ++
Sbjct: 439 NVPAFNAAITAYIEAGQFDEAKALLEVMEEQNLRPNGVTFLLLINAAGSLGDYREARTLY 498

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D++  LG  + V   +A++ A+  +G+  EA  +F++    G   +  TY  L  AY   
Sbjct: 499 DKMVDLGIPLTVEPCSALINAFAKHGMYNEARTIFDDMRKAGCKANVVTYTSLMIAY--- 555

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
            M +  Q   + M   GI P+   F
Sbjct: 556 RMYDDAQLACEEMVAAGITPDSIAF 580



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 112/273 (41%), Gaps = 17/273 (6%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S LI    K G    A  +F +MR +GC+ +   Y +L+ A+    D   A  + +    
Sbjct: 514 SALINAFAKHGMYNEARTIFDDMRKAGCKANVVTYTSLMIAYRMYDDAQLACEEMVA--- 570

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
              G+    P+ + +  L  A  +A   ++V  + K      +  D   Y   + A  + 
Sbjct: 571 --AGI---TPDSIAFGTLFVALNKANRSEKVLQIEKSSRARGILFDDVAYTETLLACSR- 624

Query: 135 GMIKEMESVL---SRMKSNQCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KP 189
             +K+ E+ L     MK  + +  + +  NLL  + G+    D++ +VF  L       P
Sbjct: 625 --LKDWETALFLYEGMKKRRLRLTNTMVINLL-SAVGRSGKLDRLHKVFLELQQQIGFVP 681

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           TL  +N +I +Y +     K   V   +      P++ TYE I++     +      EI+
Sbjct: 682 TLQMYNILIDSYSRGLKWRKCLEVLGCIKKDILEPNWKTYEPILSCLSQLELWETYLEIY 741

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
            E+   G +   + L   + AY   G+  EA L
Sbjct: 742 GEVLAQGMEPDYNILKISVTAYTSLGMEEEASL 774



 Score = 38.9 bits (89), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 40/211 (18%), Positives = 86/211 (40%), Gaps = 17/211 (8%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D+  +  L   + K  ++   + +    R  G   D   Y   + A    +D       A
Sbjct: 576 DSIAFGTLFVALNKANRSEKVLQIEKSSRARGILFDDVAYTETLLACSRLKD----WETA 631

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI-LAPDIYTYNGVM 128
           L  ++ MK       N +  N LL A  ++  +D+++ +F EL + I   P +  YN ++
Sbjct: 632 LFLYEGMKKRRLRLTNTMVIN-LLSAVGRSGKLDRLHKVFLELQQQIGFVPTLQMYNILI 690

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D+Y +    ++   VL  +K +  +P+  T+  ++    + + ++   +++  ++    +
Sbjct: 691 DSYSRGLKWRKCLEVLGCIKKDILEPNWKTYEPILSCLSQLELWETYLEIYGEVLAQGME 750

Query: 189 PTLPTFNSMIINY-----------GKARLQG 208
           P        +  Y            +ARLQG
Sbjct: 751 PDYNILKISVTAYTSLGMEEEASLTEARLQG 781


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 152/326 (46%), Gaps = 15/326 (4%)

Query: 10  DTGIYSKLI---AVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           DT  ++ L+    V+GK G+   A+ +F +M   G +P+   Y  L+        K + L
Sbjct: 125 DTATFTTLVRGLCVVGKIGE---ALDVFDKMVGEGFQPNVVTYGTLMNGLC----KDRQL 177

Query: 67  AKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            +AL  F +M  KG+    P+I TYN L+ A         V  L  E+ +S + P++ + 
Sbjct: 178 TEALNLFSEMIAKGI---SPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSL 234

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N V+DA  K G + E   V+  M     +PD++T+  L+D +  R   D+  +VF  ++ 
Sbjct: 235 NIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVR 294

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
           +     + ++N++I  Y K +   KA Y+F++M   +  P+ +TY  +I    +   +  
Sbjct: 295 NGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQD 354

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  +F+E+   G+   + T + +L+  C N    EA  L +      + PD   Y +   
Sbjct: 355 AIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAID 414

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
              +A   E  + L   +   G+ P+
Sbjct: 415 GMCRAGDLEAARDLFSNLAPRGLQPD 440



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 123/269 (45%), Gaps = 9/269 (3%)

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L  AL  F +M  M    P I  +  LL + A+ ++   V +L K++    + PD+YT  
Sbjct: 37  LDDALSSFHRMLHMHP-PPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLT 95

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            V++++     +    SVL+++     +PD  TF  L+          +   VF  ++  
Sbjct: 96  IVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGE 155

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
             +P + T+ +++    K R   +A  +F +M A   +P   TY  +I  +  C N+   
Sbjct: 156 GFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLI--HALC-NLCEW 212

Query: 246 REIFDELSKLGKDM---KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           + +   L+++ K      V +LN +++A C  G  TEA  + +     GV PD  TY  L
Sbjct: 213 KHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAAL 272

Query: 303 YKAYT-KANMKELVQKLLKRMEQNGIVPN 330
              +  ++ M E V K+   M +NG V N
Sbjct: 273 MDGHCLRSEMDEAV-KVFDMMVRNGCVCN 300



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 120/276 (43%), Gaps = 5/276 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  Q     D   Y+ L+     + +   A+ +F  M  +GC  +   YN LI  +    
Sbjct: 256 MMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYC--- 312

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K + + KA+  F++M   E   PN +TY+ L+        +    ALF E+      P+
Sbjct: 313 -KIQRIDKAMYLFEEMCRQELI-PNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPN 370

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TY+ ++D   KN  + E  ++L  ++ +   PD+  +N+ ID   +    +    +F 
Sbjct: 371 LVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFS 430

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           +L     +P + T N MI    K  L  +A  +F++M       +  TY  I       +
Sbjct: 431 NLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNN 490

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
             SRA ++ +E+   G    VST   +++    +GL
Sbjct: 491 KTSRAIQLLEEMLARGFSADVSTTALLVKMLSDDGL 526



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/287 (18%), Positives = 111/287 (38%), Gaps = 12/287 (4%)

Query: 56  HLHTRDKAKALAKALGYFQKMKGMERC------------KPNIVTYNILLRACAQARNVD 103
           H+H        AK L    KMK                  P++ T  I++ +      VD
Sbjct: 49  HMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVD 108

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
              ++  ++ +    PD  T+  ++      G I E   V  +M     +P+++T+  L+
Sbjct: 109 FALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLM 168

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           +   K +   +   +F  ++     P + T+NS+I              +  +M   K  
Sbjct: 169 NGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIM 228

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
           P+ ++   ++        V+ A ++ D + + G +  V T  A+++ +C+     EA  +
Sbjct: 229 PNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKV 288

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           F+     G   +  +Y  L   Y K    +    L + M +  ++PN
Sbjct: 289 FDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPN 335


>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 876

 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 150/309 (48%), Gaps = 5/309 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q  +  D   Y+ ++ ++G+  Q      L  +M   GC+P+   YN LI    H+ 
Sbjct: 370 LKRQPGFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLI----HSY 425

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +A  L  A+  F +M+ +  C+P+ VTY  L+   A+A  +D    +++ +  + L+PD
Sbjct: 426 GRANYLNDAVDVFNEMQRVG-CEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAGLSPD 484

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            +TY+ +++  GK G +     +   M    C P+++T+N++I    K + +    ++++
Sbjct: 485 TFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQAKARNYQSALKLYR 544

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +  +  +P   T++ ++   G      +AE VF +M    + P    Y  ++ ++G   
Sbjct: 545 DMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRKNWVPDEPVYGLLVDLWGKAG 604

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           NV +A + +  +   G    V T N++L A+       +A  L ++   +G+ P   TY 
Sbjct: 605 NVEKAWQWYQTMLNTGLRPNVPTCNSLLSAFLRVHKLADAYNLLQSMLELGLNPSLQTYT 664

Query: 301 LLYKAYTKA 309
           LL    T+A
Sbjct: 665 LLLSCCTEA 673



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 114/262 (43%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL +F  +K       +  TY  ++    +A+    +N L  ++ +    P++ TYN ++
Sbjct: 363 ALNFFYWLKRQPGFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLI 422

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            +YG+   + +   V + M+   C+PD +T+  LID + K    D   ++++ +  +   
Sbjct: 423 HSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAGLS 482

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   T++ +I   GKA     A  +F +M      P+ +TY  +I +     N   A ++
Sbjct: 483 PDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQAKARNYQSALKL 542

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           + ++   G      T + ++E     G   EA+ +F         PD   Y LL   + K
Sbjct: 543 YRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRKNWVPDEPVYGLLVDLWGK 602

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
           A   E   +  + M   G+ PN
Sbjct: 603 AGNVEKAWQWYQTMLNTGLRPN 624



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 133/291 (45%), Gaps = 13/291 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  YS +I  +GK G    A  LF EM   GC P+   YN +I      + KA+    A
Sbjct: 484 DTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIA----LQAKARNYQSA 539

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  ++ M+     +P+ VTY+I++        +D+  A+F E+      PD   Y  ++D
Sbjct: 540 LKLYRDMQSAG-FQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRKNWVPDEPVYGLLVD 598

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +GK G +++       M +   +P++ T N L+ ++ +         + +S++     P
Sbjct: 599 LWGKAGNVEKAWQWYQTMLNTGLRPNVPTCNSLLSAFLRVHKLADAYNLLQSMLELGLNP 658

Query: 190 TLPTFNSMIINYGKARLQGKAEY---VFQKMTAMKYTPSFITYECIITMYGYCDNV-SRA 245
           +L T+  ++    +AR    + Y   ++ ++ A+   P+ +    + +      NV   A
Sbjct: 659 SLQTYTLLLSCCTEAR----SPYDMGIYCELMAVTGHPAHMFLLSLPSAGPDGQNVRDHA 714

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
            +  D +    ++ K   ++A+++    +GL  EA  ++E +    V PD+
Sbjct: 715 SKFLDLMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQRNVYPDA 765



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 106/245 (43%), Gaps = 14/245 (5%)

Query: 104 QVNALFKELHESILA--------------PDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           Q N + K+L +  +A               D +TY  ++   G+      +  +L +M  
Sbjct: 349 QANQVLKQLQDHTVALNFFYWLKRQPGFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVK 408

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
           + C+P+++T+N LI SYG+    +    VF  +     +P   T+ ++I  + KA     
Sbjct: 409 DGCQPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDF 468

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  ++Q+M A   +P   TY  II   G   +++ A ++F E+ + G    + T N M+ 
Sbjct: 469 ALEMYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIA 528

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
                     A  L+ +  + G  PD  TY ++ +        +  + +   M++   VP
Sbjct: 529 LQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRKNWVP 588

Query: 330 NKRFF 334
           ++  +
Sbjct: 589 DEPVY 593



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 94/224 (41%), Gaps = 7/224 (3%)

Query: 125 NGVMDAYGKNGMIKEMES---VLSRMKSNQCKP----DIITFNLLIDSYGKRQAFDKMEQ 177
           N  MD Y  N ++K+++     L+     + +P    D  T+  ++   G+ + F  + +
Sbjct: 342 NYSMDPYQANQVLKQLQDHTVALNFFYWLKRQPGFNHDGHTYTTMVGILGRAKQFGAINK 401

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           +   ++    +P + T+N +I +YG+A     A  VF +M  +   P  +TY  +I ++ 
Sbjct: 402 LLDQMVKDGCQPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHA 461

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
               +  A E++  +   G      T + ++      G    A  LF      G  P+  
Sbjct: 462 KAGFLDFALEMYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLV 521

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           TY ++     KA   +   KL + M+  G  P+K  +   +E  
Sbjct: 522 TYNIMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVL 565


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 154/332 (46%), Gaps = 8/332 (2%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           Q  R     +  Y+ L+    +  +  LA+  F ++  +G R +  + N L+      + 
Sbjct: 115 QGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKR 174

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHE--SILA 118
             +AL   L    ++     C P++ +Y+ILL++ C Q ++  Q + L + + E  ++ +
Sbjct: 175 TDEALDILLHRTPELG----CVPDVFSYSILLKSLCDQGKS-GQADDLLRMMAEGGAVCS 229

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           P++  YN V+D + K G + +   +   M      PD++T+N ++ +  K +A DK E  
Sbjct: 230 PNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAF 289

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
            + +++ +  P   T+N++I  Y       +A  VF++M      P  +T   ++     
Sbjct: 290 LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 349

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              +  AR++FD ++  G++  V + N ML  Y   G   +   LF+     G+ PD  T
Sbjct: 350 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 409

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + +L KAY    M +    +   M  +G+ P+
Sbjct: 410 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPD 441



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 148/354 (41%), Gaps = 44/354 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I    K+G    A  LF EM   G  PD   YN+++    H   KA+A+ KA  + 
Sbjct: 235 YNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVV----HALCKARAMDKAEAFL 290

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH-ESILA-------------- 118
           ++M   +R  PN  TYN L+   +      +   +FKE+   SIL               
Sbjct: 291 RQMVN-KRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 349

Query: 119 --------------------PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
                               PD+++YN +++ Y   G + +M  +   M  +   PD  T
Sbjct: 350 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 409

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           FN+LI +Y      DK   +F  +     KP + T+ ++I    +      A   F +M 
Sbjct: 410 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 469

Query: 219 AMKYTPSFITYECIITMYGYCDNVS--RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
                P    Y C+I   G+C + S  +A+E+  E+   G  + +   ++++   C  G 
Sbjct: 470 DQGVAPDKYAYNCLIQ--GFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR 527

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +A  +F+ + N+G+ PD+  Y +L   Y      E   ++   M   GI PN
Sbjct: 528 VMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 581



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 141/296 (47%), Gaps = 13/296 (4%)

Query: 41  GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM-KGMERCKPNIVTYNILLRACAQA 99
           GC PD   Y+ L+ +     D+ K+  +A    + M +G   C PN+V YN ++    + 
Sbjct: 190 GCVPDVFSYSILLKSLC---DQGKS-GQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKE 245

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
            +V++   LFKE+ +  + PD+ TYN V+ A  K   + + E+ L +M + +  P+  T+
Sbjct: 246 GDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTY 305

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM---IINYGKARLQGKAEYVFQK 216
           N LI  Y     + +  +VFK +      P + T + +   +  YGK +   +A  VF  
Sbjct: 306 NNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIK---EARDVFDT 362

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M      P   +Y  ++  Y     +    ++FD +   G      T N +++AY   G+
Sbjct: 363 MAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGM 422

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKLLKRMEQNGIVPNK 331
             +A ++F    + GV PD  TY+ +  A  +   M + ++K  + ++Q G+ P+K
Sbjct: 423 LDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQ-GVAPDK 477



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 132/325 (40%), Gaps = 5/325 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++   + D    S L+  + K G+ + A  +F  M   G  PD   YN ++  +      
Sbjct: 329 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYA----T 384

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L      F  M G +   P+  T+N+L++A A    +D+   +F E+ +  + PD+ 
Sbjct: 385 KGCLVDMTDLFDLMLG-DGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVV 443

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  V+ A  + G + +     ++M      PD   +N LI  +    +  K +++   +
Sbjct: 444 TYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEI 503

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           M++     +  F+S+I N  K      A+ +F     +   P  + Y  ++  Y     +
Sbjct: 504 MNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKM 563

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +FD +   G +  V     ++  YC  G   E   LF      G+ P +  Y ++
Sbjct: 564 EKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSII 623

Query: 303 YKAYTKANMKELVQKLLKRMEQNGI 327
                +A      +     M ++GI
Sbjct: 624 IDGLFQAGRTVPAKMKFHEMTESGI 648



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 135/328 (41%), Gaps = 11/328 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  +IA + + G+   AM  F++M + G  PD   YN LI          KA  K 
Sbjct: 441 DVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKA--KE 498

Query: 70  LGYFQKMKGMERCKPNIVTYN-ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           L       GM     +IV ++ I+   C   R +D  N +F       L PD   Y+ +M
Sbjct: 499 LISEIMNNGMHL---DIVFFSSIINNLCKLGRVMDAQN-IFDLTVNVGLHPDAVVYSMLM 554

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D Y   G +++   V   M S   +P+++ +  L++ Y K    D+   +F+ ++    K
Sbjct: 555 DGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIK 614

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAR 246
           P+   ++ +I    +A     A+  F +MT         TY   I + G   N     A 
Sbjct: 615 PSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYN--IVLRGLFKNRCFDEAI 672

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +F EL  +   + + TLN M++         EA  LF +     + P+  TY ++    
Sbjct: 673 FLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMITNL 732

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFF 334
            K  + E  + +   M+  G  PN R  
Sbjct: 733 IKEGLVEEAEDMFSSMQNAGCEPNSRLL 760



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 137/333 (41%), Gaps = 40/333 (12%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF  M   G  PD   +N LI A+ +       L KA+  F +M+     KP++VTY  +
Sbjct: 394 LFDLMLGDGIAPDFYTFNVLIKAYAN----CGMLDKAMIIFNEMRD-HGVKPDVVTYRTV 448

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ- 151
           + A  +   +D     F ++ +  +APD Y YN ++  +  +G + + + ++S + +N  
Sbjct: 449 IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGM 508

Query: 152 --------------CK--------------------PDIITFNLLIDSYGKRQAFDKMEQ 177
                         CK                    PD + +++L+D Y      +K  +
Sbjct: 509 HLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALR 568

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           VF +++ +  +P +  + +++  Y K     +   +F++M      PS I Y  II    
Sbjct: 569 VFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLF 628

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
                  A+  F E+++ G  M + T N +L     N    EA  LF+    M V  +  
Sbjct: 629 QAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINII 688

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           T   +     +    E  + L   + ++ +VPN
Sbjct: 689 TLNTMIDGMFQTRRVEEAKDLFASISRSRLVPN 721



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 93/201 (46%), Gaps = 10/201 (4%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y  L+    K G+    + LF EM   G +P   +Y+ +I           A  K    
Sbjct: 584 VYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEM 643

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            +    M+ C     TYNI+LR   + R  D+   LFKEL    +  +I T N ++D   
Sbjct: 644 TESGIAMDIC-----TYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMF 698

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           +   ++E + + + +  ++  P+++T++++I +  K    ++ E +F S+ ++  +P   
Sbjct: 699 QTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEP--- 755

Query: 193 TFNSMIINYGKARLQGKAEYV 213
             NS ++N+    L  K E V
Sbjct: 756 --NSRLLNHVVRELLKKNEIV 774



 Score = 40.8 bits (94), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 30/196 (15%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--D 61
           QR     T +YS +I  + + G+T  A   F EM  SG   D   YN ++      R  D
Sbjct: 610 QRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFD 669

Query: 62  KAKALAKAL-----------------GYFQKMKGME-----------RCKPNIVTYNILL 93
           +A  L K L                 G FQ  +  E           R  PN+VTY+I++
Sbjct: 670 EAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMI 729

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
               +   V++   +F  +  +   P+    N V+    K   I    + LS++      
Sbjct: 730 TNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFS 789

Query: 154 PDIITFNLLIDSYGKR 169
            + +T  LL+D +  +
Sbjct: 790 LEHLTAMLLVDLFSSK 805



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 37/197 (18%), Positives = 81/197 (41%), Gaps = 9/197 (4%)

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA-EY 212
           P   T+ +L+D   +    +     F  L+ +  +  +   N ++  + +A+   +A + 
Sbjct: 122 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDI 181

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +  +   +   P   +Y   I +   CD   ++ +  D L  + +   V + N +     
Sbjct: 182 LLHRTPELGCVPDVFSYS--ILLKSLCDQ-GKSGQADDLLRMMAEGGAVCSPNVVAYNTV 238

Query: 273 MNGLPTEADL-----LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           ++G   E D+     LF+     G+ PD  TY  +  A  KA   +  +  L++M    +
Sbjct: 239 IDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 298

Query: 328 VPNKRFFLEALETFSSS 344
           +PN   +   +  +SS+
Sbjct: 299 LPNNWTYNNLIYGYSST 315


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 150/331 (45%), Gaps = 5/331 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +IA + + G+   A+ +F EM + G  P+   YN +I  H+    K   L       
Sbjct: 19  YNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHV----KGGDLEAGFRLR 74

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   +  KPNIVTYN+LL    +A  +D+   L  E+    + PD +TY+ + D   +
Sbjct: 75  DQML-HDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 133

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G  + M S+ +            T ++L++   K     K EQV + L+H+   PT   
Sbjct: 134 TGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVI 193

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N++I  Y + R    A  +F++M +    P  ITY  +I      + V++A ++  E+ 
Sbjct: 194 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 253

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           K G D  V T N +++AY   G   +   +  +    G+  D  ++  + KA+ K     
Sbjct: 254 KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIP 313

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
               +L  M    + PN + +   ++ +  S
Sbjct: 314 EAVAILDDMIYKDVAPNAQVYNSIIDAYIES 344



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 153/344 (44%), Gaps = 5/344 (1%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S L+  + K G+   A  +   + ++G  P   +YN LI  +   RD    L  A   F+
Sbjct: 160 SILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRD----LRGAFCIFE 215

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +MK     +P+ +TYN L+    +   V +   L  E+ +S + P + T+N ++DAYG  
Sbjct: 216 QMKS-RHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTA 274

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G +++  +VLS M+    K D+I+F  ++ ++ K     +   +   +++    P    +
Sbjct: 275 GQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVY 334

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           NS+I  Y ++    +A  + +KM     + S +TY  ++        +  A E+   L  
Sbjct: 335 NSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRN 394

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
            G    V + N ++ A C  G   +A  L +  +  G+ P   TY  L  A   A     
Sbjct: 395 QGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHD 454

Query: 315 VQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLT 358
           ++ L ++M    + P+   +   ++ +      S+  S K +++
Sbjct: 455 MECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMS 498



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 145/320 (45%), Gaps = 5/320 (1%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           +  T IY+ LI    +    R A  +F +M++   RPD   YNALI        K + + 
Sbjct: 188 VPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLC----KLEMVT 243

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           KA     +M+      P++ T+N L+ A   A  +++   +  ++ +  +  D+ ++  V
Sbjct: 244 KAEDLVMEME-KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSV 302

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           + A+ KNG I E  ++L  M      P+   +N +ID+Y +    ++   + + + +S  
Sbjct: 303 VKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGV 362

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
             ++ T+N ++    ++    +AE +   +      P  ++Y  II+      +  +A E
Sbjct: 363 SASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALE 422

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +  E++K G    + T + ++ A    G   + + L++   +  V P SS Y ++  AY 
Sbjct: 423 LLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYV 482

Query: 308 KANMKELVQKLLKRMEQNGI 327
           +      V  L K M + GI
Sbjct: 483 RCENDSKVASLKKEMSEKGI 502



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 142/339 (41%), Gaps = 9/339 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS L   + + G++R  + LF+E    G       Y   I  +   +D   A A+ 
Sbjct: 120 DGFTYSILFDGLTRTGESRTMLSLFAESLKKGVML--GAYTCSILLNGLCKDGKVAKAEQ 177

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +       G+    P  V YN L+    Q R++     +F+++    + PD  TYN +++
Sbjct: 178 VLEMLVHTGL---VPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALIN 234

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K  M+ + E ++  M+ +   P + TFN LID+YG     +K   V   +     K 
Sbjct: 235 GLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKS 294

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + +F S++  + K     +A  +   M      P+   Y  II  Y    +  +A  + 
Sbjct: 295 DVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLV 354

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +++   G    + T N +L+  C +    EA+ L     N G+ PD  +Y  +  A    
Sbjct: 355 EKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNK 414

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 348
              +   +LL+ M + GI P  R +     T  S+LA +
Sbjct: 415 GDTDKALELLQEMNKYGIRPTLRTY----HTLVSALASA 449



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 98/216 (45%), Gaps = 5/216 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +Q+   +D   +  ++    K G+   A+ +  +M      P+  VYN++I A++ + D 
Sbjct: 288 QQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDT 347

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +A        +KMK       +IVTYN+LL+   ++  +D+   L   L    L PD+ 
Sbjct: 348 EQAFL----LVEKMKN-SGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVV 402

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++ A    G   +   +L  M     +P + T++ L+ +         ME +++ +
Sbjct: 403 SYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQM 462

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +H   +P+   +  M+  Y +     K   + ++M+
Sbjct: 463 LHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMS 498



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 112/263 (42%), Gaps = 4/263 (1%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+  +YN+++    ++        +F E+ +  + P+  TYN ++D + K G ++    +
Sbjct: 14  PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 73

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
             +M  +  KP+I+T+N+L+    +    D+   +   +      P   T++  I+  G 
Sbjct: 74  RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYS--ILFDGL 131

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKV 261
            R       +     ++K       Y C I + G C +  V++A ++ + L   G     
Sbjct: 132 TRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTT 191

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
              N ++  YC       A  +FE   +  + PD  TY  L     K  M    + L+  
Sbjct: 192 VIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVME 251

Query: 322 MEQNGIVPNKRFFLEALETFSSS 344
           ME++G+ P+   F   ++ + ++
Sbjct: 252 MEKSGVDPSVETFNTLIDAYGTA 274



 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 17/117 (14%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I+    KG T  A+ L  EM   G RP    Y+ L++A          LA A
Sbjct: 400 DVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSA----------LASA 449

Query: 70  LGYFQKMKGM------ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            G    M+ +      +  +P+   Y I++ A  +  N  +V +L KE+ E  +A D
Sbjct: 450 -GRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 505


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 151/331 (45%), Gaps = 5/331 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +IA + + G+   A+ +F EM + G  P+   YN +I  H+    K   L       
Sbjct: 197 YNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHV----KGGDLEAGFRLR 252

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   +  KPN+VTYN+LL    +   +D+  AL  E+    + PD +TY+ + D   +
Sbjct: 253 DQML-HDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTR 311

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G  + M S+ +            T ++L++   K     K +QVF+ L+H+   PT   
Sbjct: 312 TGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVI 371

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N++I  Y + R    A  +F++M +    P  ITY  +I      + V++A ++  E+ 
Sbjct: 372 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 431

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           K G D  V T N +++AY   G   +   +  +    G+  D  ++  + KA+ K     
Sbjct: 432 KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIP 491

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
               +L  M    + PN + +   ++ +  S
Sbjct: 492 EAVAILDDMIYKDVAPNAQVYNSIIDAYIES 522



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 145/325 (44%), Gaps = 7/325 (2%)

Query: 12  GIYSKLIAVMG--KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           G Y+  I + G  K G+   A  +F  + ++G  P   +YN LI  +   RD    L  A
Sbjct: 333 GAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRD----LRGA 388

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F++MK     +P+ +TYN L+    +   V +   L  E+ +S + P + T+N ++D
Sbjct: 389 FCIFEQMKS-RHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLID 447

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           AYG  G +++  +VLS M+    K D+I+F  ++ ++ K     +   +   +++    P
Sbjct: 448 AYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAP 507

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               +NS+I  Y ++    +A  + +KM     + S +TY  ++        +  A E+ 
Sbjct: 508 NAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELI 567

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             L   G    V + N ++ A C  G   +A  L +  +  G+ P   T   L  A   A
Sbjct: 568 YTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASA 627

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
                ++ L ++M    + P+   +
Sbjct: 628 GRVHDMECLYQQMLHKNVEPSSSIY 652



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 148/322 (45%), Gaps = 9/322 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           +  T IY+ LI    +    R A  +F +M++   RPD   YNALI        K + + 
Sbjct: 366 VPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLC----KLEMVT 421

Query: 68  KALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           KA     +M+  G++   P++ T+N L+ A   A  +++   +  ++ +  +  D+ ++ 
Sbjct: 422 KAEDLVMEMEKSGVD---PSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFG 478

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            V+ A+ KNG I E  ++L  M      P+   +N +ID+Y +    ++   + + + +S
Sbjct: 479 SVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNS 538

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
               ++ T+N ++    ++    +AE +   +      P  ++Y  II+      +  +A
Sbjct: 539 GVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKA 598

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            E+  E++K G    + T + ++ A    G   + + L++   +  V P SS Y ++  A
Sbjct: 599 LELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDA 658

Query: 306 YTKANMKELVQKLLKRMEQNGI 327
           Y +      V  L K M + GI
Sbjct: 659 YVRCENDSKVASLKKEMSEKGI 680



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 142/341 (41%), Gaps = 9/341 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   YS L   + + G+++  + LF+E    G       Y   I  +   +D   A A
Sbjct: 296 LPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVML--GAYTCSILLNGLCKDGKVAKA 353

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           K +       G+    P  V YN L+    Q R++     +F+++    + PD  TYN +
Sbjct: 354 KQVFEMLVHTGL---VPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNAL 410

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++   K  M+ + E ++  M+ +   P + TFN LID+YG     +K   V   +     
Sbjct: 411 INGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGI 470

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           K  + +F S++  + K     +A  +   M      P+   Y  II  Y    +  +A  
Sbjct: 471 KSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALL 530

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + +++   G    + T N +L+  C +    EA+ L     N G+ PD  +Y  +  A  
Sbjct: 531 LVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACC 590

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 348
                +   +LL+ M + GI P     L    T  S+LA +
Sbjct: 591 NKGDTDKALELLQEMNKYGIRPT----LRTCHTLVSALASA 627



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 143/328 (43%), Gaps = 14/328 (4%)

Query: 21  MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME 80
           +G+    R A   F  +  +G RPD   +N ++ A +   D    L  AL   ++M   E
Sbjct: 135 VGRHADVRAA---FGLLVAAGARPDTFAWNKVVQACVAAGD----LDVALAMLRRMGRSE 187

Query: 81  RCKP-NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
              P +  +YN+++    ++        +F E+ +  +AP+  TYN ++D + K G ++ 
Sbjct: 188 GAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEA 247

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
              +  +M  +  KP+++T+N+L+    +    D+   +   +      P    F   I+
Sbjct: 248 GFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPD--GFTYSIL 305

Query: 200 NYGKARLQGKAEYVFQKMT-AMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLG 256
             G  R  G+++ +      ++K       Y C I + G C +  V++A+++F+ L   G
Sbjct: 306 FDGLTR-TGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTG 364

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
                   N ++  YC       A  +FE   +  + PD  TY  L     K  M    +
Sbjct: 365 LVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAE 424

Query: 317 KLLKRMEQNGIVPNKRFFLEALETFSSS 344
            L+  ME++G+ P+   F   ++ + ++
Sbjct: 425 DLVMEMEKSGVDPSVETFNTLIDAYGTA 452



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 5/216 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +Q+   +D   +  ++    K G+   A+ +  +M      P+  VYN++I A++ + D 
Sbjct: 466 QQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDT 525

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +AL       +KMK       +IVTYN+LL+   ++  +D+   L   L    L PD+ 
Sbjct: 526 EQALL----LVEKMKN-SGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVV 580

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++ A    G   +   +L  M     +P + T + L+ +         ME +++ +
Sbjct: 581 SYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQM 640

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +H   +P+   +  M+  Y +     K   + ++M+
Sbjct: 641 LHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMS 676



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/213 (19%), Positives = 86/213 (40%), Gaps = 4/213 (1%)

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           P + + N ++++    G   ++ +    + +   +PD   +N ++ +       D    +
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGK---AEYVFQKMTAMKYTPSFITYECIITM 235
            + +  S+  P    F+  ++  G  R  GK   A  VF +M  M   P+ ITY  +I  
Sbjct: 180 LRRMGRSEGAPPPDAFSYNVVIAGLWR-SGKGSDALKVFDEMVDMGVAPNRITYNTMIDG 238

Query: 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           +    ++     + D++   G    V T N +L   C  G   E   L +   +  + PD
Sbjct: 239 HVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPD 298

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             TY +L+   T+    + +  L     + G++
Sbjct: 299 GFTYSILFDGLTRTGESQTMLSLFAESLKKGVM 331


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 157/321 (48%), Gaps = 13/321 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ ++  + K G+   A  +F EM   G  PD   YN L++ +     KA  L +AL  F
Sbjct: 228 FNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYC----KAGCLHEALAVF 283

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  KG+    P++VT+  L+ A  +A N+++  AL  ++ E  L  + +T+  ++D +
Sbjct: 284 AEMAQKGV---VPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGF 340

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            +NG + +    +  M+  + +P ++ +N+LI+ Y K    D+  ++   +     KP +
Sbjct: 341 CRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDV 400

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIF 249
            T+++++  Y K      A  + +KM      P  ITY  +I   G C+   +  A E+F
Sbjct: 401 VTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIR--GLCEERRLGDACELF 458

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +++ +LG      T   +++ +C  G   +A  L +     GV PD  TY +L    +K+
Sbjct: 459 EKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKS 518

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +  Q+LL ++     VP+
Sbjct: 519 ARTKEAQRLLFKLYYEDPVPD 539



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 127/265 (47%), Gaps = 8/265 (3%)

Query: 84  PNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           PN+ TYNIL+RA CA+ +  + +  +  ++  +  AP++ TYN ++ A+ + G +   E 
Sbjct: 152 PNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAER 211

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           ++  M+    +P ++TFN +++   K    +   ++F  +      P   ++N+++  Y 
Sbjct: 212 LVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYC 271

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           KA    +A  VF +M      P  +T+  +I       N+ RA  +  ++ + G  M   
Sbjct: 272 KAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEF 331

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T  A+++ +C NG   +A L  +      + P    Y +L   Y K    +  ++L+  M
Sbjct: 332 TFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEM 391

Query: 323 EQNGIVPNKRFFLEALETFSSSLAG 347
           E  G+ P+       + T+S+ L+G
Sbjct: 392 EAKGMKPD-------VVTYSTILSG 409



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 139/317 (43%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+A   + G+   A  L   MR  G RP    +N ++        KA  +  A   F
Sbjct: 193 YNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLC----KAGRMEDARKMF 248

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   E   P+ V+YN L+    +A  + +  A+F E+ +  + PD+ T+  ++ A  +
Sbjct: 249 DEM-AREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCR 307

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++   +++ +M+    + +  TF  LID + +    D      K +   + +P++  
Sbjct: 308 AGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVC 367

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N +I  Y K     +A  +  +M A    P  +TY  I++ Y    +   A E+  ++ 
Sbjct: 368 YNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKML 427

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           K G      T ++++   C      +A  LFE    +G+ PD  TY  L   + K    +
Sbjct: 428 KKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQ 487

Query: 314 LVQKLLKRMEQNGIVPN 330
               L   M + G++P+
Sbjct: 488 KALSLHDEMIKKGVLPD 504



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 141/346 (40%), Gaps = 28/346 (8%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           Q+  + D   ++ LI  M + G    A+ L  +MR  G R +   + ALI          
Sbjct: 288 QKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLD 347

Query: 64  KALAKALGYFQKMKGMERCK--PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            AL         MK M  C+  P++V YN+L+    +   +D+   L  E+    + PD+
Sbjct: 348 DALL-------AMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDV 400

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TY+ ++  Y K G       +  +M      PD IT++ LI    + +      ++F+ 
Sbjct: 401 VTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEK 460

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++    +P   T+ ++I  + K     KA  +  +M      P  +TY  +I        
Sbjct: 461 MLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSAR 520

Query: 242 VSRAREI---------------FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
              A+ +               ++ L    +  +  ++ A+L+ + M GL  +AD ++++
Sbjct: 521 TKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQS 580

Query: 287 SHNMGVTPDSSTYKLLYKAYTKAN--MKELVQKLLKRMEQNGIVPN 330
             +     D S Y +L   + +    MK L     K++ + G  PN
Sbjct: 581 MLDRHWKLDGSVYSVLIHGHCRGGNIMKAL--SFHKQLLRCGFSPN 624



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 132/306 (43%), Gaps = 24/306 (7%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    K G+   A  L  EM   G +PD   Y+ +++ +    D   A    L   
Sbjct: 368 YNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFE--LNRK 425

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
              KG+    P+ +TY+ L+R   + R +     LF+++ +  L PD +TY  ++D + K
Sbjct: 426 MLKKGV---VPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCK 482

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV--------------- 178
            G +++  S+   M      PD++T+++LID   K     + +++               
Sbjct: 483 EGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIK 542

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           +++LMH        +  +++  +    L  +A+ V+Q M    +      Y  +I  +G+
Sbjct: 543 YEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLI--HGH 600

Query: 239 C--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
           C   N+ +A     +L + G     ++  +++      G+  EAD + +   N     D+
Sbjct: 601 CRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGLFEEGMTVEADNVIQELLNCCSLADA 660

Query: 297 STYKLL 302
            T K L
Sbjct: 661 ETSKAL 666



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 93/231 (40%), Gaps = 24/231 (10%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++  + D   YS LI  + ++ +   A  LF +M   G +PD   Y  LI  H     K 
Sbjct: 428 KKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHC----KE 483

Query: 64  KALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             + KAL    +M  KG+    P++VTY++L+   +++    +   L  +L+     PD 
Sbjct: 484 GNVQKALSLHDEMIKKGV---LPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDN 540

Query: 122 YTYNGVMD---------------AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
             Y  +M                 +   G++ + + V   M     K D   +++LI  +
Sbjct: 541 IKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGH 600

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
            +     K     K L+     P   +  S++    +  +  +A+ V Q++
Sbjct: 601 CRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGLFEEGMTVEADNVIQEL 651


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 155/329 (47%), Gaps = 9/329 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           Q  +  D   Y+ +I  + K G+   A  + ++M + GC PD + +N LI A L ++++ 
Sbjct: 330 QEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVA-LSSQNR- 387

Query: 64  KALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             L +AL   +++  KG+    P++ T+NIL+ A  +  +      LF+E+  S   PD 
Sbjct: 388 --LEEALDLARELTVKGL---SPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDE 442

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TYN ++D     G +     +L+ M+SN C    +T+N +ID+  K+   ++ E+VF  
Sbjct: 443 VTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQ 502

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           +       +  TFN++I    KA+    A  + ++M      P+ ITY  I+T Y    N
Sbjct: 503 MDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGN 562

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           + +A +I + ++  G ++ V T   ++   C  G    A  L       G+ P    Y  
Sbjct: 563 IKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNP 622

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + ++  + N       L + M + G  P+
Sbjct: 623 VIQSLFRRNNLRDALNLFREMTEVGEPPD 651



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 153/338 (45%), Gaps = 17/338 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+  +  + + G    A+ +   M   G  PD   YN +I    +   K   L +A
Sbjct: 301 DQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVI----NCLSKNGELDEA 356

Query: 70  LGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
            G   +M  ++R C P+  T+N L+ A +    +++   L +EL    L+PD+YT+N ++
Sbjct: 357 KGIVNQM--VDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILI 414

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID---SYGK-RQAFDKMEQVFKSLMH 184
           +A  K G       +   MKS+ C PD +T+N+LID   S GK   A D + +     M 
Sbjct: 415 NALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNE-----ME 469

Query: 185 SKEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
           S   P +  T+N++I    K     +AE VF +M A   + S +T+  +I        + 
Sbjct: 470 SNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRID 529

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A E+ +++ K G      T N++L  YC  G   +A  + E     G   D  TY  L 
Sbjct: 530 DATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLI 589

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
               KA   ++  KLL+ M   GI P  + +   +++ 
Sbjct: 590 NGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSL 627



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 139/306 (45%), Gaps = 8/306 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ LI  + K G   L + LF EM++SGC PD   YN LI  HL +  K   L  A
Sbjct: 406 DVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILID-HLCSMGK---LGNA 461

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L    +M+    C  + VTYN ++ A  +   +++   +F ++    ++    T+N ++D
Sbjct: 462 LDLLNEMES-NGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLID 520

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K   I +   ++ +M     +P+ IT+N ++  Y K+    K   + +++  +  + 
Sbjct: 521 GLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEI 580

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ ++I    KA     A  + + M      P+   Y  +I      +N+  A  +F
Sbjct: 581 DVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLF 640

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEA--DLLFENSHNMGVTPDSSTYKLLYKAYT 307
            E++++G+     T   +  + C  G P +   D L E   N G  P+ S++++L +   
Sbjct: 641 REMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMV-NKGFMPEFSSFRMLAEGLL 699

Query: 308 KANMKE 313
              M +
Sbjct: 700 NLGMDD 705



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 142/331 (42%), Gaps = 8/331 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           +   + +Y +++  +G  G   L   L  EMR  G +    V  + + ++   R    A+
Sbjct: 85  FAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVRSFVESYARLRRFDDAV 144

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
              L   Q        + + V +N LL    +   +  + +++ E+    + PD+ T N 
Sbjct: 145 DLVLN--QLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNT 202

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++ A  +   ++    +L  M S+   PD  TF  L+  + +  + +   +V   +M + 
Sbjct: 203 LIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAG 262

Query: 187 EKPTLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VS 243
             PT  T N +I  Y K  R++    Y+ Q++ A  + P  +TY   +  +G C N  VS
Sbjct: 263 CSPTGVTVNVLINGYCKMGRVEDALGYIQQEI-ADGFEPDQVTYNTFV--HGLCQNGHVS 319

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A ++ D + + G D  V T N ++     NG   EA  +     + G  PD++T+  L 
Sbjct: 320 HALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLI 379

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            A +  N  E    L + +   G+ P+   F
Sbjct: 380 VALSSQNRLEEALDLARELTVKGLSPDVYTF 410



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 137/318 (43%), Gaps = 5/318 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           ADT +++ L+ V+ +  + +L   +++EM   G +PD    N LI A      +A  +  
Sbjct: 160 ADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALC----RAHQVRT 215

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A+   ++M       P+  T+  L++   +  +++    +  ++ E+  +P   T N ++
Sbjct: 216 AVLMLEEMSS-HGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLI 274

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + Y K G +++    + +  ++  +PD +T+N  +    +        +V   ++     
Sbjct: 275 NGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHD 334

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P + T+N++I    K     +A+ +  +M      P   T+  +I      + +  A ++
Sbjct: 335 PDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDL 394

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             EL+  G    V T N ++ A C  G P     LFE   + G TPD  TY +L      
Sbjct: 395 ARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCS 454

Query: 309 ANMKELVQKLLKRMEQNG 326
                    LL  ME NG
Sbjct: 455 MGKLGNALDLLNEMESNG 472


>gi|357138821|ref|XP_003570985.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Brachypodium distachyon]
          Length = 613

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 140/291 (48%), Gaps = 13/291 (4%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           + SEM+  G  P  +VYNA +   L    KA+   KA+  +Q+MK  ERC+ N  TY ++
Sbjct: 244 VISEMQEHGIPPSATVYNAYLDGLL----KARCTVKAVEVYQRMK-KERCRTNTETYTLM 298

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +++       +F E+       +I TY  +++A+ + G+ ++ E V  +M+    
Sbjct: 299 INVYGKSKQPMSAMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGH 358

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           +PD+  +N L+++Y +        ++F  + H   +P   ++N ++  YG+A L  +AE 
Sbjct: 359 EPDVYAYNALMEAYSRAGFPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEA 418

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
            F+ +      P+  ++  +++ +    NV R  ++  +L K G       LNAML AY 
Sbjct: 419 TFESLKQQGMAPTMKSHMLLLSAHARSGNVGRCEQVMAQLHKSGLRPDTFALNAMLHAYA 478

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
             G   + + L   + ++  + D  ++ +   AY +A         L RME
Sbjct: 479 RAGRLDDMERLLA-AMDLAGSADVGSHNVAVNAYARAG-------YLGRME 521



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 142/298 (47%), Gaps = 10/298 (3%)

Query: 43  RPDPSVYNALITAHLHTR--DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR 100
           RPD   YN LI A+   R  +KA+++  A+   Q       C P   TY +LLRA   AR
Sbjct: 184 RPDIICYNLLIDAYGRKRQLNKAESIYAAVLEAQ-------CVPTEDTYALLLRAYCNAR 236

Query: 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
           ++ +   +  E+ E  + P    YN  +D   K     +   V  RMK  +C+ +  T+ 
Sbjct: 237 SLHRAEGVISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKERCRTNTETYT 296

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
           L+I+ YGK +      ++F  +     K  + T+ +++  + +  L  KAE VF++M   
Sbjct: 297 LMINVYGKSKQPMSAMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQA 356

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
            + P    Y  ++  Y        A EIF  +  +G +   ++ N +++AY   GL  EA
Sbjct: 357 GHEPDVYAYNALMEAYSRAGFPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREA 416

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           +  FE+    G+ P   ++ LL  A+ ++      ++++ ++ ++G+ P+  F L A+
Sbjct: 417 EATFESLKQQGMAPTMKSHMLLLSAHARSGNVGRCEQVMAQLHKSGLRPDT-FALNAM 473



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 126/262 (48%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P+I+ YN+L+ A  + R +++  +++  + E+   P   TY  ++ AY     +   E 
Sbjct: 184 RPDIICYNLLIDAYGRKRQLNKAESIYAAVLEAQCVPTEDTYALLLRAYCNARSLHRAEG 243

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           V+S M+ +   P    +N  +D   K +   K  +V++ +   + +    T+  MI  YG
Sbjct: 244 VISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKERCRTNTETYTLMINVYG 303

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           K++    A  +F +M ++    +  TY  ++  +       +A E+F+++ + G +  V 
Sbjct: 304 KSKQPMSAMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGHEPDVY 363

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
             NA++EAY   G P  A  +F    +MG  PD ++Y +L  AY +A +    +   + +
Sbjct: 364 AYNALMEAYSRAGFPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEATFESL 423

Query: 323 EQNGIVPNKRFFLEALETFSSS 344
           +Q G+ P  +  +  L   + S
Sbjct: 424 KQQGMAPTMKSHMLLLSAHARS 445



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 107/220 (48%)

Query: 112 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171
           ++ S   PDI  YN ++DAYG+   + + ES+ + +   QC P   T+ LL+ +Y   ++
Sbjct: 178 VYRSSFRPDIICYNLLIDAYGRKRQLNKAESIYAAVLEAQCVPTEDTYALLLRAYCNARS 237

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
             + E V   +      P+   +N+ +    KAR   KA  V+Q+M   +   +  TY  
Sbjct: 238 LHRAEGVISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKERCRTNTETYTL 297

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           +I +YG       A +IF+E+  +G    + T  A++ A+   GL  +A+ +FE     G
Sbjct: 298 MINVYGKSKQPMSAMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAG 357

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             PD   Y  L +AY++A   +   ++   M+  G  P++
Sbjct: 358 HEPDVYAYNALMEAYSRAGFPQGASEIFSLMQHMGCEPDR 397



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 142/317 (44%), Gaps = 5/317 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI   G+K Q   A  +++ +  + C P    Y  L+ A+ +    A++L +A
Sbjct: 186 DIICYNLLIDAYGRKRQLNKAESIYAAVLEAQCVPTEDTYALLLRAYCN----ARSLHRA 241

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            G   +M+      P+   YN  L    +AR   +   +++ + +     +  TY  +++
Sbjct: 242 EGVISEMQ-EHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKERCRTNTETYTLMIN 300

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK+        + + M+S  CK +I T+  L++++ +    +K E+VF+ +  +  +P
Sbjct: 301 VYGKSKQPMSAMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGHEP 360

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  +N+++  Y +A     A  +F  M  M   P   +Y  ++  YG       A   F
Sbjct: 361 DVYAYNALMEAYSRAGFPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEATF 420

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           + L + G    + +   +L A+  +G     + +    H  G+ PD+     +  AY +A
Sbjct: 421 ESLKQQGMAPTMKSHMLLLSAHARSGNVGRCEQVMAQLHKSGLRPDTFALNAMLHAYARA 480

Query: 310 NMKELVQKLLKRMEQNG 326
              + +++LL  M+  G
Sbjct: 481 GRLDDMERLLAAMDLAG 497



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 149/331 (45%), Gaps = 16/331 (4%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+K+R    +T  Y+ +I V GK  Q   AM +F+EM++ GC+ +   Y AL+ A     
Sbjct: 283 MKKERCRT-NTETYTLMINVYGKSKQPMSAMKIFNEMQSIGCKANICTYTALVNAFA--- 338

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +     KA   F++M+     +P++  YN L+ A ++A      + +F  +      PD
Sbjct: 339 -REGLCEKAEEVFEQMQQAGH-EPDVYAYNALMEAYSRAGFPQGASEIFSLMQHMGCEPD 396

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             +YN ++DAYG+ G+ +E E+    +K     P + +  LL+ ++ +     + EQV  
Sbjct: 397 RASYNILVDAYGRAGLHREAEATFESLKQQGMAPTMKSHMLLLSAHARSGNVGRCEQVMA 456

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS--FITYECIITMYGY 238
            L  S  +P     N+M+  Y +A   G+ + + + + AM    S    ++   +  Y  
Sbjct: 457 QLHKSGLRPDTFALNAMLHAYARA---GRLDDMERLLAAMDLAGSADVGSHNVAVNAYAR 513

Query: 239 CDNVSRAREIFDEL-----SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
              + R    F+ +      K G D  V +  + +  Y       +   +FE   + G  
Sbjct: 514 AGYLGRMEAAFEGIRRRKGKKGGIDADVVSWTSRMGGYARKKEYGKCLEIFEEMVDAGCY 573

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           PD+ T K+L  A +     E V  +++ M +
Sbjct: 574 PDAGTAKVLMAACSDERQVEQVAAIVRSMHK 604


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 153/330 (46%), Gaps = 11/330 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  Q  +  D   ++ L+  + K G  + A+ +   M   G  PD   YN++I+      
Sbjct: 285 MSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLC--- 341

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K   + +A+ +  +M   + C PN VTYN L+    +   V++   L + L    + PD
Sbjct: 342 -KLGEVKEAVEFLDQMITRD-CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPD 399

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + T+N ++         +    +   M+S  C+PD  T+N+LIDS   +   D+   + K
Sbjct: 400 VCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLK 459

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +  S    ++ T+N++I  + KA    +AE +F +M     + + +TY  +I   G C 
Sbjct: 460 QMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLID--GLCK 517

Query: 241 N--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTEADLLFENSHNMGVTPDSS 297
           +  V  A ++ D++   G+     T N++L  +C  G +   AD++   + N G  PD  
Sbjct: 518 SRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSN-GCEPDIV 576

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           TY  L     KA   E+  KLL+ ++  GI
Sbjct: 577 TYGTLISGLCKAGRVEVASKLLRSIQMKGI 606



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 152/323 (47%), Gaps = 9/323 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           +T  Y+ LI+ + K+ Q   A  L   + + G  PD   +N+LI     TR+   A+   
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAME-- 421

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F++M+  + C+P+  TYN+L+ +      +D+   + K++  S  A  + TYN ++D
Sbjct: 422 --LFEEMRS-KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLID 478

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            + K   I+E E +   M+ +    + +T+N LID   K +  +   Q+   ++   +KP
Sbjct: 479 GFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKP 538

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T+NS++ ++ +     KA  + Q MT+    P  +TY  +I+       V  A ++ 
Sbjct: 539 DKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLL 598

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF-ENSHNMGVTPDSSTYKLLYKAYTK 308
             +   G  +     N +++        TEA  LF E        PD+ +Y+++++    
Sbjct: 599 RSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCN 658

Query: 309 AN--MKELVQKLLKRMEQNGIVP 329
               ++E V  L++ +E+ G VP
Sbjct: 659 GGGPIREAVDFLVELLEK-GFVP 680



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 145/358 (40%), Gaps = 32/358 (8%)

Query: 6   WYI-ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           W I  D   ++ LI  + +  Q R A+ +  +M + G  PD   +  ++  ++   D   
Sbjct: 183 WGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDG 242

Query: 65  AL-------------------------------AKALGYFQKMKGMERCKPNIVTYNILL 93
           AL                                 AL + Q+M   +   P+  T+N L+
Sbjct: 243 ALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLV 302

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
               +A +V     +   + +    PD+YTYN V+    K G +KE    L +M +  C 
Sbjct: 303 NGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCS 362

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P+ +T+N LI +  K    ++  ++ + L      P + TFNS+I      R    A  +
Sbjct: 363 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL 422

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F++M +    P   TY  +I        +  A  +  ++   G    V T N +++ +C 
Sbjct: 423 FEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCK 482

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
                EA+ +F+     GV+ +S TY  L     K+   E   +L+ +M   G  P+K
Sbjct: 483 ANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDK 540



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 149/331 (45%), Gaps = 12/331 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL--HTRD 61
           Q  Y  D   Y+ +I+ + K G+ + A+    +M    C P+   YN LI+     +  +
Sbjct: 323 QEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVE 382

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           +A  LA+ L      KG+    P++ T+N L++     RN      LF+E+      PD 
Sbjct: 383 EATELARVL----TSKGI---LPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDE 435

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           +TYN ++D+    G + E  ++L +M+ + C   +IT+N LID + K     + E++F  
Sbjct: 436 FTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDE 495

Query: 182 L-MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           + +H   + ++ T+N++I    K+R    A  +  +M      P   TY  ++T +    
Sbjct: 496 MEVHGVSRNSV-TYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGG 554

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           ++ +A +I   ++  G +  + T   ++   C  G    A  L  +    G+      Y 
Sbjct: 555 DIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYN 614

Query: 301 LLYKA-YTKANMKELVQKLLKRMEQNGIVPN 330
            + +  + K    E +    + +EQN   P+
Sbjct: 615 PVIQGLFRKRKTTEAINLFREMLEQNEAAPD 645



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/331 (20%), Positives = 134/331 (40%), Gaps = 9/331 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT--AHLHTR 60
           K+  +  +  +Y +++  +G+ G       +  +M+NSGC    S +  LI   A    +
Sbjct: 75  KKPNFSPEPALYEEILLRLGRSGSFDDMRKILEDMKNSGCEMGTSPFLILIESYAQFELQ 134

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           D      + LG    M      KP+   YN +L       N+  V     ++    + PD
Sbjct: 135 D------EILGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPD 188

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + T+N ++ A  +   ++    +L  M S    PD  TF  ++  Y +    D   ++ +
Sbjct: 189 VSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIRE 248

Query: 181 SLMHSKEKPTLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
            ++      +  + N ++  + K  R++    ++ +      + P   T+  ++      
Sbjct: 249 QMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKA 308

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            +V  A EI D + + G D  V T N+++   C  G   EA    +       +P++ TY
Sbjct: 309 GHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTY 368

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             L     K N  E   +L + +   GI+P+
Sbjct: 369 NTLISTLCKENQVEEATELARVLTSKGILPD 399



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 128/332 (38%), Gaps = 46/332 (13%)

Query: 32  WLFSEMRNSGCRPDPSVYNALITAHLHTRD-KAKALAKALGYFQKMKGMERCKPNIVTYN 90
           W+  +    G +PD   YN ++   +   + K   +A A     KM  +   KP++ T+N
Sbjct: 143 WMIDDF---GLKPDTHFYNRMLNLLVDGNNLKLVEIAHA-----KMS-VWGIKPDVSTFN 193

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
           +L++A  +A  +     + +++    L PD  T+  +M  Y + G +     +  +M   
Sbjct: 194 VLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEF 253

Query: 151 QCK------------------------------------PDIITFNLLIDSYGKRQAFDK 174
            C                                     PD  TFN L++   K      
Sbjct: 254 GCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKH 313

Query: 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
             ++   ++     P + T+NS+I    K     +A     +M     +P+ +TY  +I+
Sbjct: 314 AIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLIS 373

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
                + V  A E+   L+  G    V T N++++  C+      A  LFE   + G  P
Sbjct: 374 TLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEP 433

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           D  TY +L  +       +    +LK+ME +G
Sbjct: 434 DEFTYNMLIDSLCSKGKLDEALNMLKQMELSG 465


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 150/331 (45%), Gaps = 5/331 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +IA + + G+   A+ +F EM + G  P+   YN +I  H+    K   L       
Sbjct: 197 YNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHV----KGGDLEAGFRLR 252

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   +  KPNIVTYN+LL    +A  +D+   L  E+    + PD +TY+ + D   +
Sbjct: 253 DQML-HDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 311

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G  + M S+ +            T ++L++   K     K EQV + L+H+   PT   
Sbjct: 312 TGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVI 371

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N++I  Y + R    A  +F++M +    P  ITY  +I      + V++A ++  E+ 
Sbjct: 372 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 431

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           K G D  V T N +++AY   G   +   +  +    G+  D  ++  + KA+ K     
Sbjct: 432 KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIP 491

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
               +L  M    + PN + +   ++ +  S
Sbjct: 492 EAVAILDDMIYKDVAPNAQVYNSIIDAYIES 522



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 145/325 (44%), Gaps = 7/325 (2%)

Query: 12  GIYSKLIAVMG--KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           G Y+  I + G  K G+   A  +   + ++G  P   +YN LI  +   RD    L  A
Sbjct: 333 GAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRD----LRGA 388

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F++MK     +P+ +TYN L+    +   V +   L  E+ +S + P + T+N ++D
Sbjct: 389 FCIFEQMKS-RHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLID 447

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           AYG  G +++  +VLS M+    K D+I+F  ++ ++ K     +   +   +++    P
Sbjct: 448 AYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAP 507

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               +NS+I  Y ++    +A  + +KM     + S +TY  ++        +  A E+ 
Sbjct: 508 NAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELI 567

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             L   G    V + N ++ A C  G   +A  L +  +  G+ P   TY  L  A   A
Sbjct: 568 YTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASA 627

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
                ++ L ++M    + P+   +
Sbjct: 628 GRVHDMECLYQQMLHKNVEPSSSIY 652



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 148/322 (45%), Gaps = 9/322 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           +  T IY+ LI    +    R A  +F +M++   RPD   YNALI        K + + 
Sbjct: 366 VPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLC----KLEMVT 421

Query: 68  KALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           KA     +M+  G++   P++ T+N L+ A   A  +++   +  ++ +  +  D+ ++ 
Sbjct: 422 KAEDLVMEMEKSGVD---PSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFG 478

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            V+ A+ KNG I E  ++L  M      P+   +N +ID+Y +    ++   + + + +S
Sbjct: 479 SVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNS 538

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
               ++ T+N ++    ++    +AE +   +      P  ++Y  II+      +  +A
Sbjct: 539 GVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKA 598

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            E+  E++K G    + T + ++ A    G   + + L++   +  V P SS Y ++  A
Sbjct: 599 LELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDA 658

Query: 306 YTKANMKELVQKLLKRMEQNGI 327
           Y +      V  L K M + GI
Sbjct: 659 YVRCENDSKVASLKKEMSEKGI 680



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 142/339 (41%), Gaps = 9/339 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS L   + + G++R  + LF+E    G       Y   I  +   +D   A A+ 
Sbjct: 298 DGFTYSILFDGLTRTGESRTMLSLFAESLKKGVML--GAYTCSILLNGLCKDGKVAKAEQ 355

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +       G+    P  V YN L+    Q R++     +F+++    + PD  TYN +++
Sbjct: 356 VLEMLVHTGL---VPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALIN 412

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K  M+ + E ++  M+ +   P + TFN LID+YG     +K   V   +     K 
Sbjct: 413 GLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKS 472

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + +F S++  + K     +A  +   M      P+   Y  II  Y    +  +A  + 
Sbjct: 473 DVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLV 532

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +++   G    + T N +L+  C +    EA+ L     N G+ PD  +Y  +  A    
Sbjct: 533 EKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNK 592

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 348
              +   +LL+ M + GI P  R +     T  S+LA +
Sbjct: 593 GDTDKALELLQEMNKYGIRPTLRTY----HTLVSALASA 627



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 136/327 (41%), Gaps = 12/327 (3%)

Query: 21  MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME 80
           +G+    R A   F  +  +G RPD   +N ++ A +   D    L  AL   ++M   E
Sbjct: 135 VGRHADVRAA---FGLLVAAGARPDTFAWNKVVQACVAAGD----LDVALAMVRRMGRSE 187

Query: 81  RCKP-NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
              P +  +YN+++    ++        +F E+ +  + P+  TYN ++D + K G ++ 
Sbjct: 188 GAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEA 247

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
              +  +M  +  KP+I+T+N+L+    +    D+   +   +      P    F   I+
Sbjct: 248 GFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPD--GFTYSIL 305

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGK 257
             G  R       +     ++K       Y C I + G C +  V++A ++ + L   G 
Sbjct: 306 FDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGL 365

Query: 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
                  N ++  YC       A  +FE   +  + PD  TY  L     K  M    + 
Sbjct: 366 VPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAED 425

Query: 318 LLKRMEQNGIVPNKRFFLEALETFSSS 344
           L+  ME++G+ P+   F   ++ + ++
Sbjct: 426 LVMEMEKSGVDPSVETFNTLIDAYGTA 452



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 98/216 (45%), Gaps = 5/216 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +Q+   +D   +  ++    K G+   A+ +  +M      P+  VYN++I A++ + D 
Sbjct: 466 QQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDT 525

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +A        +KMK       +IVTYN+LL+   ++  +D+   L   L    L PD+ 
Sbjct: 526 EQAFL----LVEKMKN-SGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVV 580

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++ A    G   +   +L  M     +P + T++ L+ +         ME +++ +
Sbjct: 581 SYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQM 640

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +H   +P+   +  M+  Y +     K   + ++M+
Sbjct: 641 LHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMS 676



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/213 (19%), Positives = 87/213 (40%), Gaps = 4/213 (1%)

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           P + + N ++++    G   ++ +    + +   +PD   +N ++ +       D    +
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGK---AEYVFQKMTAMKYTPSFITYECIITM 235
            + +  S+  P    F+  ++  G  R  GK   A  VF +M  M   P++ITY  +I  
Sbjct: 180 VRRMGRSEGAPPPDAFSYNVVIAGLWR-SGKGSDALKVFDEMVDMGVVPNWITYNTMIDG 238

Query: 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           +    ++     + D++   G    + T N +L   C  G   E  +L +   +  + PD
Sbjct: 239 HVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPD 298

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             TY +L+   T+      +  L     + G++
Sbjct: 299 GFTYSILFDGLTRTGESRTMLSLFAESLKKGVM 331



 Score = 37.7 bits (86), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 17/117 (14%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I+    KG T  A+ L  EM   G RP    Y+ L++A          LA A
Sbjct: 578 DVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSA----------LASA 627

Query: 70  LGYFQKMKGM------ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            G    M+ +      +  +P+   Y I++ A  +  N  +V +L KE+ E  +A D
Sbjct: 628 -GRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 683


>gi|410110087|gb|AFV61123.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           urticoides]
          Length = 423

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 134/276 (48%), Gaps = 5/276 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS +++SG  PD   YNA+I        KAK   +
Sbjct: 32  GDLVLYSNLIELSRKLCDYSKAISIFSRLKSSGFTPDLVAYNAMINVF----GKAKLFRE 87

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +MK      PN  +Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 88  ARSLISEMK-TAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMI 146

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +     +
Sbjct: 147 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIE 206

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSMI+ YGK     KA  + Q+M +    P+ ITY  II+++G    + RA  +
Sbjct: 207 QNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAML 266

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 284
           F +L   G ++       M+ AY   GL   A  L 
Sbjct: 267 FQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLL 302



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 150/316 (47%), Gaps = 5/316 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI   GK+G    A+    +M       D  +Y+ LI       D +KA++     F
Sbjct: 2   YSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAIS----IF 57

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++K      P++V YN ++    +A+   +  +L  E+  + + P+  +Y+ ++  Y +
Sbjct: 58  SRLKS-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVE 116

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +     +P + +
Sbjct: 117 NKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 176

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N+++  YG A L G+A ++F+ M       + +TY  +I +YG      +A  +  E+ 
Sbjct: 177 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQ 236

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G +    T + ++  +   G    A +LF+   + GV  D   ++ +  AY +A +  
Sbjct: 237 SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVA 296

Query: 314 LVQKLLKRMEQNGIVP 329
             ++LL  +++   +P
Sbjct: 297 HAKRLLHELKRPDNIP 312



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 148/331 (44%), Gaps = 15/331 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K   +  D   Y+ +I V GK    R A  L SEM+ +G  P+ + Y+ L+T ++     
Sbjct: 61  KSSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVEN--- 117

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   +AL  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ 
Sbjct: 118 -KKFLEALSVFSEMREI-KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 175

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++  YG   +  E   +   M+    + +++T+N +I  YGK    +K   + + +
Sbjct: 176 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEM 235

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P   T++++I  +GK     +A  +FQK+ +       I ++ +I  Y     V
Sbjct: 236 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLV 295

Query: 243 SRAREIFDELSK---LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           + A+ +  EL +   + +D  +  L          G   EA  +F  + + G   D + +
Sbjct: 296 AHAKRLLHELKRPDNIPRDTAIHILAGA-------GRIEEATYVFRQAIDAGEVKDITVF 348

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + +    +K      V ++  +M   G  P+
Sbjct: 349 ERMIHLLSKYKKYSNVVEVFDKMRGLGYFPD 379



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 101/208 (48%)

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY+ ++  +GK G+     S L +M+ +Q   D++ ++ LI+   K   + K   +F  L
Sbjct: 1   TYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 60

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
             S   P L  +N+MI  +GKA+L  +A  +  +M      P+  +Y  ++TMY      
Sbjct: 61  KSSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKF 120

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A  +F E+ ++   + ++T N M++ Y   G+  EAD LF     MG+ P+  +Y  L
Sbjct: 121 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 180

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
            + Y  A +      L + M++  I  N
Sbjct: 181 LRVYGDAELFGEAIHLFRLMQRKNIEQN 208



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 109/243 (44%)

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           TY+ L+    +    D   +  +++ +  +  D+  Y+ +++   K     +  S+ SR+
Sbjct: 1   TYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 60

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           KS+   PD++ +N +I+ +GK + F +   +   +  +   P   ++++++  Y + +  
Sbjct: 61  KSSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKF 120

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            +A  VF +M  +K      T   +I +YG       A ++F  + K+G +  V + N +
Sbjct: 121 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 180

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           L  Y    L  EA  LF       +  +  TY  +   Y K    E    L++ M+  GI
Sbjct: 181 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGI 240

Query: 328 VPN 330
            PN
Sbjct: 241 EPN 243



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 114/271 (42%), Gaps = 36/271 (13%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           +I V G+ G  + A  LF  MR  G  P+   YN L+  +      A+   +A+  F+ M
Sbjct: 145 MIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY----GDAELFGEAIHLFRLM 200

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +  +  + N+VTYN ++    +    ++ N L +E+    + P+  TY+ ++  +GK G 
Sbjct: 201 Q-RKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGK 259

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSY--------GKRQAFD--------------- 173
           +     +  +++S+  + D I F  +I +Y         KR   +               
Sbjct: 260 LDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHI 319

Query: 174 -----KMEQ---VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
                ++E+   VF+  + + E   +  F  MI    K +       VF KM  + Y P 
Sbjct: 320 LAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPD 379

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLG 256
                 ++  YG      +A +++ E+ ++G
Sbjct: 380 SNVIAVVLNAYGKLQEFDKANDVYMEMQEVG 410


>gi|302819880|ref|XP_002991609.1| hypothetical protein SELMODRAFT_133813 [Selaginella moellendorffii]
 gi|300140642|gb|EFJ07363.1| hypothetical protein SELMODRAFT_133813 [Selaginella moellendorffii]
          Length = 356

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 140/293 (47%), Gaps = 7/293 (2%)

Query: 49  YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL 108
           YNA+I A+     +AK    A   + +M   E   P+ VTY+IL+      +N   ++ L
Sbjct: 33  YNAMIAAYY----QAKRPKDAWDVYHQMLA-EGIDPDEVTYDILV--SGSGKNGYPIDRL 85

Query: 109 FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
           F E+    +A  + +YN V+ A+ K G I ++E V+  M   + +PD+ +FN LI +Y  
Sbjct: 86  FLEIKSRGVALTLRSYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAAYAM 145

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
            +  ++  QVF ++  +   P + T+ ++I  + ++ +  +A  +F++M   K  P F  
Sbjct: 146 SRKPERGLQVFSNMKAAGVLPDIVTYTTLIQMFSRSSMHKEAIEMFEEMVVNKCQPDFFV 205

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
           Y  ++++YG    V+ A  IF  L   G    + T  +++ A+   GL  E+   F    
Sbjct: 206 YSLLVSVYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQME 265

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
             G   D      +  AY KA M      LL R+   G+ PN+  +   +E F
Sbjct: 266 AYGCRADVHLLNTMIDAYAKAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGF 318



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 146/303 (48%), Gaps = 13/303 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---HLHTRDKAKALAKAL 70
           Y+ +IA   +  + + A  ++ +M   G  PD   Y+ L++    + +  D+     K+ 
Sbjct: 33  YNAMIAAYYQAKRPKDAWDVYHQMLAEGIDPDEVTYDILVSGSGKNGYPIDRLFLEIKSR 92

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           G    ++          +YN+++ A  +  ++D+V  + +E+    L PD++++N ++ A
Sbjct: 93  GVALTLR----------SYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAA 142

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           Y  +   +    V S MK+    PDI+T+  LI  + +     +  ++F+ ++ +K +P 
Sbjct: 143 YAMSRKPERGLQVFSNMKAAGVLPDIVTYTTLIQMFSRSSMHKEAIEMFEEMVVNKCQPD 202

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
              ++ ++  YGKA L   A  +F ++    + P+ +TY  +I+ + +   +  +R+ F 
Sbjct: 203 FFVYSLLVSVYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFS 262

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           ++   G    V  LN M++AY   G+  +A  L       GV P+ ++Y ++ + +  A 
Sbjct: 263 QMEAYGCRADVHLLNTMIDAYAKAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGFLHAG 322

Query: 311 MKE 313
             E
Sbjct: 323 HVE 325



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 84/159 (52%), Gaps = 5/159 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ LI +  +    + A+ +F EM  + C+PD  VY+ L++ +     KA  +A
Sbjct: 165 LPDIVTYTTLIQMFSRSSMHKEAIEMFEEMVVNKCQPDFFVYSLLVSVY----GKAGLVA 220

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            AL  F +++ +E  +PNIVTY  L+ A      +++    F ++       D++  N +
Sbjct: 221 DALLIFHRLQ-LEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVHLLNTM 279

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
           +DAY K GM+ +  ++L R+ +    P+  ++ ++++ +
Sbjct: 280 IDAYAKAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGF 318



 Score = 44.3 bits (103), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 2/154 (1%)

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           L  +N+MI  Y +A+    A  V+ +M A    P  +TY+ +++  G   N      +F 
Sbjct: 30  LRPYNAMIAAYYQAKRPKDAWDVYHQMLAEGIDPDEVTYDILVS--GSGKNGYPIDRLFL 87

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+   G  + + + N ++ A+   G   + + +        + PD  ++  L  AY  + 
Sbjct: 88  EIKSRGVALTLRSYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAAYAMSR 147

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             E   ++   M+  G++P+   +   ++ FS S
Sbjct: 148 KPERGLQVFSNMKAAGVLPDIVTYTTLIQMFSRS 181


>gi|255661198|gb|ACU25768.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 426

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 156/334 (46%), Gaps = 9/334 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD  VYN++I        KAK   +
Sbjct: 42  GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGIMPDLVVYNSMINVF----GKAKLFRE 97

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +M+      P+ V+Y  LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 98  ARSLISEMR-TAGVMPDTVSYTALLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMI 156

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +     +
Sbjct: 157 DVYGQLGMAKEADKLFWSMRKLGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIE 216

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSM++ YGK     KA  + Q+M +    P+ ITY  II+++G    + RA  +
Sbjct: 217 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNAITYSTIISIWGKVGKLDRAAIL 276

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F++L   G ++       M+ AY   GL + A  L    H +  TPD+           +
Sbjct: 277 FEKLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRLL---HELK-TPDNIPRDTAIHILAR 332

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           A   E    + ++    G V +   F   ++ FS
Sbjct: 333 AGRIEEATWVFRQAIDAGEVKDITVFERMIDLFS 366



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 151/320 (47%), Gaps = 5/320 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI   GK+G    A+    +M     R D  +Y+ LI       D +KA++  
Sbjct: 8   DRYTYSTLITYFGKEGLFDDALSWLQKMEQDRVRGDLVLYSNLIELSRKLCDYSKAIS-- 65

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F ++K      P++V YN ++    +A+   +  +L  E+  + + PD  +Y  ++ 
Sbjct: 66  --IFSRLK-RSGIMPDLVVYNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTALLT 122

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y +N    E  SV + M+  +C  D+ T N++ID YG+     + +++F S+     +P
Sbjct: 123 MYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGIEP 182

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG      +A  + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+   G +    T + ++  +   G    A +LFE   + G+  D   Y+ +  AY +A
Sbjct: 243 QEMQSRGIEPNAITYSTIISIWGKVGKLDRAAILFEKLRSSGIEIDQVLYQTMIVAYERA 302

Query: 310 NMKELVQKLLKRMEQNGIVP 329
            +    ++LL  ++    +P
Sbjct: 303 GLVSHAKRLLHELKTPDNIP 322



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 109/214 (50%)

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           L+PD YTY+ ++  +GK G+  +  S L +M+ ++ + D++ ++ LI+   K   + K  
Sbjct: 5   LSPDRYTYSTLITYFGKEGLFDDALSWLQKMEQDRVRGDLVLYSNLIELSRKLCDYSKAI 64

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
            +F  L  S   P L  +NSMI  +GKA+L  +A  +  +M      P  ++Y  ++TMY
Sbjct: 65  SIFSRLKRSGIMPDLVVYNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTALLTMY 124

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                   A  +F E+ ++   + ++T N M++ Y   G+  EAD LF +   +G+ P+ 
Sbjct: 125 VENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGIEPNV 184

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +Y  L + Y  A +      L + M++  I  N
Sbjct: 185 VSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQN 218



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 146/313 (46%), Gaps = 13/313 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ +I V GK    R A  L SEMR +G  PD   Y AL+T ++      K   +A
Sbjct: 78  DLVVYNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTALLTMYVEN----KKFLEA 133

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ +YN ++ 
Sbjct: 134 LSVFAEMREI-KCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGIEPNVVSYNTLLR 192

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YG   +  E   +   M+    + +++T+N ++  YGK    +K   + + +     +P
Sbjct: 193 VYGDAELFGEAIHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEP 252

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T++++I  +GK     +A  +F+K+ +       + Y+ +I  Y     VS A+ + 
Sbjct: 253 NAITYSTIISIWGKVGKLDRAAILFEKLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRLL 312

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK- 308
            EL       + + ++ +  A    G   EA  +F  + + G   D + ++ +   ++K 
Sbjct: 313 HELKTPDNIPRDTAIHILARA----GRIEEATWVFRQAIDAGEVKDITVFERMIDLFSKY 368

Query: 309 ---ANMKELVQKL 318
              +N+ E+  K+
Sbjct: 369 KKYSNIVEVFDKM 381



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 113/271 (41%), Gaps = 36/271 (13%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           +I V G+ G  + A  LF  MR  G  P+   YN L+  +      A+   +A+  F+ M
Sbjct: 155 MIDVYGQLGMAKEADKLFWSMRKLGIEPNVVSYNTLLRVY----GDAELFGEAIHLFRLM 210

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +  +  + N+VTYN ++    +    ++ N L +E+    + P+  TY+ ++  +GK G 
Sbjct: 211 QRKD-IEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNAITYSTIISIWGKVGK 269

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSY--------GKRQAFD--------------- 173
           +     +  +++S+  + D + +  +I +Y         KR   +               
Sbjct: 270 LDRAAILFEKLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRLLHELKTPDNIPRDTAIHI 329

Query: 174 -----KMEQ---VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
                ++E+   VF+  + + E   +  F  MI  + K +       VF KM  ++Y   
Sbjct: 330 LARAGRIEEATWVFRQAIDAGEVKDITVFERMIDLFSKYKKYSNIVEVFDKMRGLEYFSD 389

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLG 256
                 ++  YG      +A +++ E+   G
Sbjct: 390 SYVIALVLNAYGKLHEFEKANDVYTEMQDEG 420



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 81/169 (47%), Gaps = 9/169 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I++ GK G+   A  LF ++R+SG   D  +Y  +I A+    ++A  ++ A    
Sbjct: 257 YSTIISIWGKVGKLDRAAILFEKLRSSGIEIDQVLYQTMIVAY----ERAGLVSHAKRLL 312

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++K      P+ +  +  +   A+A  +++   +F++  ++    DI  +  ++D + K
Sbjct: 313 HELK-----TPDNIPRDTAIHILARAGRIEEATWVFRQAIDAGEVKDITVFERMIDLFSK 367

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
                 +  V  +M+  +   D     L++++YGK   F+K   V+  +
Sbjct: 368 YKKYSNIVEVFDKMRGLEYFSDSYVIALVLNAYGKLHEFEKANDVYTEM 416


>gi|410110081|gb|AFV61120.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           camara]
          Length = 381

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 141/294 (47%), Gaps = 6/294 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YNA+I        KAK   +
Sbjct: 2   GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFRE 57

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +MK      PN  +Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 58  ARSLISEMK-TAGVXPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMI 116

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +     +
Sbjct: 117 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIE 176

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSMI+ YGK     KA  + Q+M +    P+ ITY  II+++G    + RA  +
Sbjct: 177 QNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAML 236

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKL 301
           F +L   G ++       M+ AY   GL   A  LL E      +  D++ + L
Sbjct: 237 FQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHIL 290



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 130/263 (49%), Gaps = 1/263 (0%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +KA+  F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  +Y+ 
Sbjct: 21  SKAISIFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVXPNTTSYST 79

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +    
Sbjct: 80  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 139

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + ++N+++  YG A L G+A ++F+ M       + +TY  +I +YG      +A 
Sbjct: 140 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKAN 199

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G +    T + ++  +   G    A +LF+   + GV  D   ++ +  AY
Sbjct: 200 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 259

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            +A +    ++LL  +++   +P
Sbjct: 260 ERAGLVAHAKRLLHELKRPDNIP 282



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 151/343 (44%), Gaps = 15/343 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEM+ +G  P+ + Y+ L+T ++     
Sbjct: 31  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVXPNTTSYSTLLTMYVEN--- 87

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   +AL  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ 
Sbjct: 88  -KKFLEALSVFSEMREI-KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 145

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++  YG   +  E   +   M+    + +++T+N +I  YGK    +K   + + +
Sbjct: 146 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEM 205

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P   T++++I  +GK     +A  +FQK+ +       I ++ +I  Y     V
Sbjct: 206 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLV 265

Query: 243 SRAREIFDELSK---LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           + A+ +  EL +   + +D  +  L          G   EA  +F  + + G   D + +
Sbjct: 266 AHAKRLLHELKRPDNIPRDTAIHILAGA-------GRIEEATYVFRQAIDAGEVKDITVF 318

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           + +    +K      V ++  +M   G  P+       L  + 
Sbjct: 319 ERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVITVVLNAYG 361



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 119/250 (47%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           ++V Y+ L+    +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  S++
Sbjct: 3   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 62

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
           S MK+    P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+ 
Sbjct: 63  SEMKTAGVXPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 122

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
            +  +A+ +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T 
Sbjct: 123 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 182

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N+M+  Y       +A+ L +   + G+ P+S TY  +   + K    +    L +++  
Sbjct: 183 NSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 242

Query: 325 NGIVPNKRFF 334
           +G+  ++  F
Sbjct: 243 SGVEIDQILF 252


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 156/329 (47%), Gaps = 17/329 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K GQ R A+ L   +     +P+  +YN +I +      K K + +A   +
Sbjct: 146 YGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMC----KVKLVNEAFDLY 201

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   E   P++VTY+ L+        +     LF ++    + PD+YT+N ++D + K
Sbjct: 202 SEMVS-EGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCK 260

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G +KE ++V + M     KP+++T+  L+D Y   +  +K   +F ++      P   +
Sbjct: 261 DGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQS 320

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDE 251
           +N MI  + K +   +A  +F+KM      P+ +TY  +I   G C +  +S A ++ DE
Sbjct: 321 YNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLID--GLCKSGKISYALKLVDE 378

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEA--------DLLFENSHNMGVTPDSSTYKLLY 303
           +   G    + T +++L+A C N    +A        D +FE+    G   D   Y ++ 
Sbjct: 379 MHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMI 438

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKR 332
           + +    +      LL +ME NG +P+ +
Sbjct: 439 QGFCVKGLFNEALALLSKMEDNGRIPDAK 467



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 153/328 (46%), Gaps = 21/328 (6%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ +I  M K      A  L+SEM + G  PD   Y+ALI+           L  A+  
Sbjct: 180 MYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFF----IVGKLKDAIDL 235

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F KM  +E  KP++ T+NIL+    +   + +   +F  + +  + P++ TY  +MD Y 
Sbjct: 236 FNKMI-LENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYC 294

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTL 191
               + +  S+ + M      PD  ++N++I+ + K +  D+   +FK  MH K   P +
Sbjct: 295 LVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKK-MHCKNIIPNV 353

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVSRA--- 245
            T+ S+I    K+   GK  Y  + +  M      P  ITY  I+        V +A   
Sbjct: 354 VTYTSLIDGLCKS---GKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIAL 410

Query: 246 -----REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
                 ++F++L   G ++ V     M++ +C+ GL  EA  L     + G  PD+ TY+
Sbjct: 411 LTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSKMEDNGRIPDAKTYE 470

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIV 328
           ++  +  K +  ++ +KLL+ M   G++
Sbjct: 471 IIILSLFKKDENDMAEKLLREMIARGLL 498



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 141/316 (44%), Gaps = 10/316 (3%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH---------LHTRDKAKALA 67
           LI    + GQ  L+  +F+ +   G  P+      LI            ++   K     
Sbjct: 101 LINCFSQLGQNPLSFSVFANILKKGYDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQAR 160

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            AL   +++ G +  +PN+V YN ++ +  + + V++   L+ E+    ++PD+ TY+ +
Sbjct: 161 AALQLLRRVDG-KLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSAL 219

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  +   G +K+   + ++M     KPD+ TFN+L+D + K     + + VF  +M    
Sbjct: 220 ISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGI 279

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           KP + T+ S++  Y   +   KA  +F  M      P   +Y  +I  +     V  A  
Sbjct: 280 KPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMN 339

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F ++        V T  ++++  C +G  + A  L +  H+ GV PD  TY  +  A  
Sbjct: 340 LFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALC 399

Query: 308 KANMKELVQKLLKRME 323
           K +  +    LL +++
Sbjct: 400 KNHQVDKAIALLTKLK 415



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/277 (19%), Positives = 114/277 (41%), Gaps = 21/277 (7%)

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F ++   +   P I  +  +L +  +        +L +++    +A ++ T N +++ + 
Sbjct: 47  FNRLLHQKNPTPPIFEFGKILGSLVKINCYHTAISLHRQMELKGIASNLVTLNILINCFS 106

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLID------SYGK-----------RQAFDKM 175
           + G      SV + +      P++IT   LI       SYG            R A   +
Sbjct: 107 QLGQNPLSFSVFANILKKGYDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLL 166

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
            +V   L+    +P +  +N++I +  K +L  +A  ++ +M +   +P  +TY  +I+ 
Sbjct: 167 RRVDGKLV----QPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISG 222

Query: 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           +     +  A ++F+++        V T N +++ +C +G   E   +F      G+ P+
Sbjct: 223 FFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPN 282

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             TY  L   Y           +   M Q G+ P+ +
Sbjct: 283 VVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQ 319


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 166/357 (46%), Gaps = 48/357 (13%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           ++LI+ + + G+T  A  +   +   G   + +  NAL+TA      +A+   +      
Sbjct: 274 TQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTA----LGRAREFKRMNTLLA 329

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH--ES---ILAPDIYTYNGVMD 129
           +MK M+  +PN+VT+ IL+    + R VD+   +F++++  ES   ++ PD+ TYN ++D
Sbjct: 330 EMKEMD-IQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLID 388

Query: 130 AYGKNGMIKEMESVLSRMKSN-QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
              K G  +E   ++ RM+S  +C P+ +T+N LID Y K    +   ++F  +      
Sbjct: 389 GLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVP 448

Query: 189 PTLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           P + T N+++    K  R+ G  E+ F +M       + +TY  +I  +   +N+ +A E
Sbjct: 449 PNVVTLNTLVDGMCKHGRINGAVEF-FNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAME 507

Query: 248 IFDE-------------------LSKLGK---------DMK-------VSTLNAMLEAYC 272
           +FDE                   LS+ GK          MK       + + N ++  +C
Sbjct: 508 LFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFC 567

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
                 EA  + +   N G+ PD  TY  L   ++K        +L+K+M + G+VP
Sbjct: 568 RKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVP 624



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 147/336 (43%), Gaps = 43/336 (12%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL-HT 59
           M+ Q   + +T  Y+ LI    K      A  LF +M   G  P+    N L+     H 
Sbjct: 406 MRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHG 465

Query: 60  RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
           R     +  A+ +F +M+G +  K N VTY  L+RA     N+++   LF E+ E+  +P
Sbjct: 466 R-----INGAVEFFNEMQG-KGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSP 519

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D   Y  ++    + G +     VLS+MK     PDI++FN+LI+ + ++   D+  ++ 
Sbjct: 520 DAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEML 579

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           K + ++  KP   T+N++I ++ K      A  + +KM      P+ +TY          
Sbjct: 580 KEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTY---------- 629

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN-SHNMGVTPDSST 298
                                     A++ AYC+NG   EA  +F + S    V P++  
Sbjct: 630 -------------------------GALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVI 664

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           Y +L  +  + N  +L   L+  M+  G+ PN   F
Sbjct: 665 YNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTF 700



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 10/226 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y  LI+ + + G+   A ++ S+M+ +G  PD   +N LI          +A    
Sbjct: 520 DAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEA---- 575

Query: 70  LGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              ++ +K ME    KP+ VTYN L+   ++  +    + L K++ +  L P + TY  +
Sbjct: 576 ---YEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGAL 632

Query: 128 MDAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           + AY  NG + E   +   M S ++  P+ + +N+LI+S  ++   D    +   +    
Sbjct: 633 IHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKG 692

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 232
            KP   TFN+M     +     KA  +  +MT     P +IT E +
Sbjct: 693 VKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEIL 738



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 4/155 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+   K G    A  L  +M   G  P    Y ALI A+    +    L +A
Sbjct: 590 DGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGN----LDEA 645

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +  F+ M    +  PN V YNIL+ +  +   VD   +L  ++    + P+  T+N +  
Sbjct: 646 MKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFK 705

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164
              +   + +   ++ RM  + C PD IT  +L +
Sbjct: 706 GLQEKNWLSKAFELMDRMTEHACNPDYITMEILTE 740



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 110/267 (41%), Gaps = 16/267 (5%)

Query: 80  ERCKPNIVTY--NILLRACAQARNVDQVNALFKELHE--SILAPDIYTYNGVMDAYGKNG 135
           E C    +T+  NIL+    +   VD    L  E+ +  +   P+  T + V  A  K  
Sbjct: 184 ELCPSRRLTHIRNILIDVLFRKGRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRD 243

Query: 136 MI------KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +      +E+  ++S+   ++  P+ I    LI    +    D+   V   LM      
Sbjct: 244 KVGRAVDEEEIVGLVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVM 303

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              + N+++   G+AR   +   +  +M  M   P+ +T+  +I        V  A E+F
Sbjct: 304 EAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVF 363

Query: 250 D-----ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG-VTPDSSTYKLLY 303
           +     E +    +  V T N +++  C  G   E   L E   +     P++ TY  L 
Sbjct: 364 EKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLI 423

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
             Y KA+M E  ++L  +M ++G+ PN
Sbjct: 424 DGYCKASMIEAARELFDQMNKDGVPPN 450


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 151/354 (42%), Gaps = 44/354 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  ++ VM K GQT LAM L  +M     + D   Y+ +I        K  +L  A   F
Sbjct: 215 YGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLC----KDGSLDNAFNLF 270

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+ ++  K +I+ Y  L+R    A   D    L +++ +  + PD+  ++ ++D + K
Sbjct: 271 NEME-IKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVK 329

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++E E +   M      PD +T+  LID + K    DK   +   ++     P + T
Sbjct: 330 EGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRT 389

Query: 194 FNSMIINYGKARL---------------------------QGKAEY--------VFQKMT 218
           FN +I  Y KA L                           QG  E         +FQ+M 
Sbjct: 390 FNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMV 449

Query: 219 AMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           + +  P  ++Y+  I + G CDN    +A EIF+++ K   ++ +   N ++   C    
Sbjct: 450 SRRVRPDIVSYK--ILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASK 507

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +A  LF +    GV PD  TY ++     K         L ++ME++G  PN
Sbjct: 508 VDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPN 561



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 136/327 (41%), Gaps = 48/327 (14%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R    D   +S LI    K+G+ R A  L  EM   G  PD   Y +LI        K 
Sbjct: 310 KRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFC----KE 365

Query: 64  KALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             L KA      M  KG   C PNI T+NIL+    +A  +D    LF+++    +  D 
Sbjct: 366 NQLDKANHMLDLMVSKG---CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADT 422

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TYN ++  + + G ++  + +   M S + +PDI+++ +L+D        +K  ++F+ 
Sbjct: 423 VTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEK 482

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD- 240
           +  SK +  +  +N                                     I ++G C+ 
Sbjct: 483 IEKSKMELDIGIYN-------------------------------------IIIHGMCNA 505

Query: 241 -NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             V  A ++F  L   G    V T N M+   C  G  +EADLLF      G +P+  TY
Sbjct: 506 SKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTY 565

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNG 326
            +L +A+          KL++ +++ G
Sbjct: 566 NILIRAHLGEGDATKSAKLIEEIKRCG 592



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 144/328 (43%), Gaps = 13/328 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  DT  +S LI  +  +G+   A+ L   M   G +P     NAL+   L    K   +
Sbjct: 138 YEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNG-LCLNGK---V 193

Query: 67  AKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           + A+    +M   G +   PN VTY  +L+   ++        L +++ E  +  D   Y
Sbjct: 194 SDAVLLIDRMVETGFQ---PNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKY 250

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           + ++D   K+G +    ++ + M+    K DII +  LI  +     +D   ++ + ++ 
Sbjct: 251 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK 310

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNV 242
            K  P +  F+++I  + K     +AE + ++M     +P  +TY  +I   G+C  + +
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLID--GFCKENQL 368

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  + D +   G    + T N ++  YC   L  +   LF      GV  D+ TY  L
Sbjct: 369 DKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTL 428

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
            + + +    E+ ++L + M    + P+
Sbjct: 429 IQGFCELGKLEVAKELFQEMVSRRVRPD 456



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 6/195 (3%)

Query: 137 IKEMESV--LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           IKE ++V     M  ++ +P +I F+ L     + + +D +  + K +        L T 
Sbjct: 51  IKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTL 110

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDEL 252
           + MI    + R    A     K+  + Y P  +T+  +I   G C    VS A E+ D +
Sbjct: 111 SIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLIN--GLCLEGRVSEALELVDRM 168

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            ++G    + TLNA++   C+NG  ++A LL +     G  P+  TY  + K   K+   
Sbjct: 169 VEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQT 228

Query: 313 ELVQKLLKRMEQNGI 327
            L  +LL++ME+  I
Sbjct: 229 ALAMELLRKMEERKI 243



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 125/314 (39%), Gaps = 9/314 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ LF EM  S  RP P + +      +  R K   L   L    ++KG+     N+ T 
Sbjct: 56  AVDLFQEMTRS--RPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAH---NLYTL 110

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           +I++  C + R +    +   ++ +    PD  T++ +++     G + E   ++ RM  
Sbjct: 111 SIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVE 170

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
              KP +IT N L++             +   ++ +  +P   T+  ++    K+     
Sbjct: 171 MGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTAL 230

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAM 267
           A  + +KM   K     + Y  II   G C +  +  A  +F+E+   G    +     +
Sbjct: 231 AMELLRKMEERKIKLDAVKYSIIID--GLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTL 288

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +  +C  G   +   L  +     +TPD   +  L   + K       ++L K M Q GI
Sbjct: 289 IRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGI 348

Query: 328 VPNKRFFLEALETF 341
            P+   +   ++ F
Sbjct: 349 SPDTVTYTSLIDGF 362



 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 5/136 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D GIY+ +I  M    +   A  LF  +   G +PD   YN +I        K  +L++A
Sbjct: 491 DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLC----KKGSLSEA 546

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F+KM+  +   PN  TYNIL+RA     +  +   L +E+     + D  T   V+D
Sbjct: 547 DLLFRKMEE-DGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVD 605

Query: 130 AYGKNGMIKEMESVLS 145
                 + K    +LS
Sbjct: 606 MLSDGRLKKSFLDMLS 621


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 159/363 (43%), Gaps = 40/363 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K++ ++ +    ++++++  K  +T++A  L++EM     R     +N +I   L    K
Sbjct: 173 KEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINV-LCKEGK 231

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   + +G+ + +      KPN+VTYN ++          +   +F+ + +  L PD Y
Sbjct: 232 LKKAKEFIGHMETLG----VKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCY 287

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM-----EQ 177
           TYN  +    K G ++E   ++ +M      P+ +T+N LID Y  +   DK      E 
Sbjct: 288 TYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEM 347

Query: 178 VFKSLMHS---------------------------KEKPTLP---TFNSMIINYGKARLQ 207
           + K +M S                           +EK  +P   T N +I  Y +    
Sbjct: 348 ISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDA 407

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            +A  +  +M      P+ +TY  +I + G  + +  A  +F ++ + G    +   NA+
Sbjct: 408 KRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNAL 467

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           ++ +C NG    A  L +   NM V PD  TY  L + Y +    E  ++LL  M++ GI
Sbjct: 468 IDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGI 527

Query: 328 VPN 330
            P+
Sbjct: 528 KPD 530



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 154/345 (44%), Gaps = 16/345 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K +    D   Y+  I+ + K+G+   A  L  +M   G  P+   YNALI  + +  D 
Sbjct: 278 KDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGD- 336

Query: 63  AKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
              L KA  Y  +M  KG+     ++VTYN+ + A      +   + + KE+ E  + PD
Sbjct: 337 ---LDKAYAYRDEMISKGI---MASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPD 390

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             T+N +++ Y + G  K    +L  M     +P ++T+  LI   GKR    + + +F 
Sbjct: 391 AVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFS 450

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC- 239
            +      P +  FN++I  +       +A  + ++M  MK  P  ITY  +  M GYC 
Sbjct: 451 KIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTL--MQGYCR 508

Query: 240 -DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              V  AR++ DE+ + G      + N ++  Y   G   +A  + +     G  P   T
Sbjct: 509 EGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILT 568

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL---EALET 340
           Y  L +   K    E  ++LLK M   GI P+   +L   EA+ET
Sbjct: 569 YNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAMET 613



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 76/174 (43%)

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           + F+LL+ +Y + +  ++  + F  +      P + T N M+  + K      A  ++ +
Sbjct: 147 LIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAE 206

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M  M    S  T+  +I +      + +A+E    +  LG    V T N ++  +C+ G 
Sbjct: 207 MFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGK 266

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              A ++F+   + G+ PD  TY        K    E    L+ +M + G+VPN
Sbjct: 267 FQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPN 320



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 110/281 (39%), Gaps = 41/281 (14%)

Query: 87  VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 146
           + +++L+RA  + +  ++    F  + E    P+I T N ++  + K    +    + + 
Sbjct: 147 LIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAE 206

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           M     +  + TFN++I+   K     K ++    +     KP + T+N++I  +G   L
Sbjct: 207 MFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTII--HGHC-L 263

Query: 207 QGK---AEYVFQKMTAMKYTPSFITYECIIT----------------------------- 234
           +GK   A  +FQ M      P   TY   I+                             
Sbjct: 264 RGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVT 323

Query: 235 ----MYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
               + GYC+  ++ +A    DE+   G    + T N  + A  M G   +AD + +   
Sbjct: 324 YNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMR 383

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             G+ PD+ T+ +L   Y +    +    LL  M   GI P
Sbjct: 384 EKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQP 424


>gi|224124604|ref|XP_002319373.1| predicted protein [Populus trichocarpa]
 gi|222857749|gb|EEE95296.1| predicted protein [Populus trichocarpa]
          Length = 810

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 164/368 (44%), Gaps = 42/368 (11%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T  Y+ LI + GK G+ + A  +FSEM  SG   D   +N +I     T      L++A 
Sbjct: 132 TSTYNTLIDLYGKAGRLKDAAEVFSEMLKSGVAMDTITFNTMI----FTCGSHGLLSEAE 187

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
               KM+   R  P+  TYNI L   A A N++     + ++    L PDI ++  ++  
Sbjct: 188 SLLDKME-ERRISPDTRTYNIFLSLYADAGNINAALECYWKIRNVGLVPDIVSHRTILHI 246

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITF-----------------NLL----------- 162
                M++E+E+V+  MK +  K D+ +                  NLL           
Sbjct: 247 LCGRNMVREVEAVIEEMKKSSQKIDVHSVPGIIKMYINEGLHDRANNLLDKCQFDVGFSS 306

Query: 163 ------IDSYGKRQAFDKMEQVF--KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
                 ID+Y +R  + + E VF  K  +   EK  L  +N M+  YGKA+L  KA  +F
Sbjct: 307 KVRAAIIDAYAERGLWAEAEAVFYGKRDLLGPEKGVLE-YNVMVKAYGKAKLYDKAFSLF 365

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           + M      P  +TY  +I M+   D + +AR++ DE+ + G   +  T +A++  Y   
Sbjct: 366 KGMRNHGTWPDEVTYNSLIQMFSGGDLMDQARDLLDEMQEAGFKPQCLTFSAVMACYARL 425

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           G  ++A  +++     GV P+   Y  L   + +    E   K  + ME++GI  N+   
Sbjct: 426 GQLSDAVDVYQEMVKAGVKPNEVVYGSLINGFAEVGNVEEALKYFRMMEESGIPANQIVL 485

Query: 335 LEALETFS 342
              ++ +S
Sbjct: 486 TSLIKVYS 493



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 142/332 (42%), Gaps = 15/332 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCR----PDPSV--YNALITAHLHTRDKA 63
           D G  SK+ A +      R  +W  +E    G R    P+  V  YN ++ A+     KA
Sbjct: 301 DVGFSSKVRAAIIDAYAER-GLWAEAEAVFYGKRDLLGPEKGVLEYNVMVKAY----GKA 355

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           K   KA   F+ M+      P+ VTYN L++  +    +DQ   L  E+ E+   P   T
Sbjct: 356 KLYDKAFSLFKGMRN-HGTWPDEVTYNSLIQMFSGGDLMDQARDLLDEMQEAGFKPQCLT 414

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           ++ VM  Y + G + +   V   M     KP+ + +  LI+ + +    ++  + F+ + 
Sbjct: 415 FSAVMACYARLGQLSDAVDVYQEMVKAGVKPNEVVYGSLINGFAEVGNVEEALKYFRMME 474

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
            S          S+I  Y K      A+++++KM  ++  P  I    +I++Y     +S
Sbjct: 475 ESGIPANQIVLTSLIKVYSKLGCFDGAKHLYKKMKDLEGGPDIIASNSMISLYADLGMIS 534

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  +F  L + G+   VS    M+  Y   G+  EA  + E     G+  D  +Y  + 
Sbjct: 535 EAELVFKNLRENGQADGVS-FATMMYLYKSMGMLDEAIDIAEEMKQSGLLRDCVSYNKVM 593

Query: 304 KAY-TKANMKELVQKLLKRMEQNGIVPNKRFF 334
             Y T   ++E  + LL  M    ++P+   F
Sbjct: 594 ACYATNGQLRECAE-LLHEMIGQKLLPDGGTF 624



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 149/366 (40%), Gaps = 43/366 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +S ++A   + GQ   A+ ++ EM  +G +P+  VY +LI       +    + +AL YF
Sbjct: 415 FSAVMACYARLGQLSDAVDVYQEMVKAGVKPNEVVYGSLINGFAEVGN----VEEALKYF 470

Query: 74  QKMKGMERCKP-NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           + M+  E   P N +    L++  ++    D    L+K++ +    PDI   N ++  Y 
Sbjct: 471 RMME--ESGIPANQIVLTSLIKVYSKLGCFDGAKHLYKKMKDLEGGPDIIASNSMISLYA 528

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
             GMI E E V   ++ N  + D ++F  ++  Y      D+   + + +  S       
Sbjct: 529 DLGMISEAELVFKNLRENG-QADGVSFATMMYLYKSMGMLDEAIDIAEEMKQSGLLRDCV 587

Query: 193 TFNSMIINYG-KARLQGKAEYVFQKMTAMKYTPSFITYECIITMY--------------- 236
           ++N ++  Y    +L+  AE +  +M   K  P   T++ + T+                
Sbjct: 588 SYNKVMACYATNGQLRECAE-LLHEMIGQKLLPDGGTFKILFTVLKKGGFPSEGIAQLES 646

Query: 237 GYCDNVSRARE-----IF-------------DELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
            Y +    AR+     IF             +  +K    +     N  + AY  +G   
Sbjct: 647 AYLEGKPYARQAVITSIFSVVGLHALALESCESFTKAEVALDSFAYNVAIYAYGSSGEID 706

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           +A   F    + G+ PD  T   L   Y KA M E V+++  +++   I PN       +
Sbjct: 707 KALKTFMKRQDEGLEPDLVTSINLVHCYGKAGMVEGVKRIYSQLKYGEIKPNDSLVKAVV 766

Query: 339 ETFSSS 344
           + + ++
Sbjct: 767 DAYKNA 772



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 122/306 (39%), Gaps = 30/306 (9%)

Query: 37  MRNSGCRPDPSVYNALITAHLHTRDKAKA-LAKALGYFQKMKGMERCKPNIVTYNILLRA 95
           M  +G  P  + Y  L+  +      AKA L +AL + + M+ +    P+ VT N +++ 
Sbjct: 1   MAKNGVLPTNNTYGMLVDVY------AKAGLVEALLWIKHMR-LRGLFPDEVTMNTVVKV 53

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG-----------MIKEMESVL 144
                  D+    +K+     +  D    + ++D+  +NG           ++ E+    
Sbjct: 54  LKDVGEFDKAERFYKDWCAGRVELDGLELDSMLDS--ENGSRSEPVSFKHFLLTELFKTG 111

Query: 145 SRMKSNQC--------KPDII-TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195
            R+K            KP +  T+N LID YGK        +VF  ++ S       TFN
Sbjct: 112 GRVKIGGSSDEETLVRKPCLTSTYNTLIDLYGKAGRLKDAAEVFSEMLKSGVAMDTITFN 171

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
           +MI   G   L  +AE +  KM   + +P   TY   +++Y    N++ A E + ++  +
Sbjct: 172 TMIFTCGSHGLLSEAESLLDKMEERRISPDTRTYNIFLSLYADAGNINAALECYWKIRNV 231

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
           G    + +   +L   C   +  E + + E         D  +   + K Y    + +  
Sbjct: 232 GLVPDIVSHRTILHILCGRNMVREVEAVIEEMKKSSQKIDVHSVPGIIKMYINEGLHDRA 291

Query: 316 QKLLKR 321
             LL +
Sbjct: 292 NNLLDK 297



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 98/234 (41%), Gaps = 27/234 (11%)

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           P   TY  ++D Y K G+++ +  +   M+     PD +T N ++        FDK E+ 
Sbjct: 8   PTNNTYGMLVDVYAKAGLVEALLWI-KHMRLRGLFPDEVTMNTVVKVLKDVGEFDKAERF 66

Query: 179 FKSLMHSKEKPTLPTFNSMI----------INY------------GKARLQGKAEYVFQK 216
           +K     + +      +SM+          +++            G+ ++ G ++    +
Sbjct: 67  YKDWCAGRVELDGLELDSMLDSENGSRSEPVSFKHFLLTELFKTGGRVKIGGSSD----E 122

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
            T ++      TY  +I +YG    +  A E+F E+ K G  M   T N M+     +GL
Sbjct: 123 ETLVRKPCLTSTYNTLIDLYGKAGRLKDAAEVFSEMLKSGVAMDTITFNTMIFTCGSHGL 182

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +EA+ L +      ++PD+ TY +    Y  A       +   ++   G+VP+
Sbjct: 183 LSEAESLLDKMEERRISPDTRTYNIFLSLYADAGNINAALECYWKIRNVGLVPD 236



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 125/342 (36%), Gaps = 49/342 (14%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--LHTRDKAKALAKAL 70
           +Y  LI    + G    A+  F  M  SG   +  V  +LI  +  L   D AK L    
Sbjct: 449 VYGSLINGFAEVGNVEEALKYFRMMEESGIPANQIVLTSLIKVYSKLGCFDGAKHL---- 504

Query: 71  GYFQKMKGMERCKPNIVTYNIL-------------------LRACAQARNV--------- 102
             ++KMK +E   P+I+  N +                   LR   QA  V         
Sbjct: 505 --YKKMKDLEG-GPDIIASNSMISLYADLGMISEAELVFKNLRENGQADGVSFATMMYLY 561

Query: 103 ------DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
                 D+   + +E+ +S L  D  +YN VM  Y  NG ++E   +L  M   +  PD 
Sbjct: 562 KSMGMLDEAIDIAEEMKQSGLLRDCVSYNKVMACYATNGQLRECAELLHEMIGQKLLPDG 621

Query: 157 ITFNLLIDSYGKRQAF--DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
            TF +L  +  K+  F  + + Q+  + +  K         S+    G   L   A    
Sbjct: 622 GTFKILF-TVLKKGGFPSEGIAQLESAYLEGKPYARQAVITSIFSVVG---LHALALESC 677

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           +  T  +       Y   I  YG    + +A + F +    G +  + T   ++  Y   
Sbjct: 678 ESFTKAEVALDSFAYNVAIYAYGSSGEIDKALKTFMKRQDEGLEPDLVTSINLVHCYGKA 737

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
           G+      ++       + P+ S  K +  AY  AN  +L +
Sbjct: 738 GMVEGVKRIYSQLKYGEIKPNDSLVKAVVDAYKNANRHDLAE 779



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 91/219 (41%), Gaps = 15/219 (6%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ   + D   Y+K++A     GQ R    L  EM      PD   +  L T        
Sbjct: 578 KQSGLLRDCVSYNKVMACYATNGQLRECAELLHEMIGQKLLPDGGTFKILFTVLKKGGFP 637

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI----LA 118
           ++ +A+    +  ++G    +  ++T            +V  ++AL  E  ES     +A
Sbjct: 638 SEGIAQLESAY--LEGKPYARQAVIT---------SIFSVVGLHALALESCESFTKAEVA 686

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
            D + YN  + AYG +G I +      + +    +PD++T   L+  YGK    + ++++
Sbjct: 687 LDSFAYNVAIYAYGSSGEIDKALKTFMKRQDEGLEPDLVTSINLVHCYGKAGMVEGVKRI 746

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           +  L + + KP      +++  Y  A     AE V Q +
Sbjct: 747 YSQLKYGEIKPNDSLVKAVVDAYKNANRHDLAELVNQDI 785



 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 109/261 (41%), Gaps = 21/261 (8%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P   TY +L+   A+A  V+ +    K +    L PD  T N V+      G   + E  
Sbjct: 8   PTNNTYGMLVDVYAKAGLVEAL-LWIKHMRLRGLFPDEVTMNTVVKVLKDVGEFDKAERF 66

Query: 144 LSRMKSNQCKPDIITFNLLIDSY-GKRQ---AFDK--MEQVFKSLMHSK----------- 186
                + + + D +  + ++DS  G R    +F    + ++FK+    K           
Sbjct: 67  YKDWCAGRVELDGLELDSMLDSENGSRSEPVSFKHFLLTELFKTGGRVKIGGSSDEETLV 126

Query: 187 EKPTL-PTFNSMIINYGKA-RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
            KP L  T+N++I  YGKA RL+  AE VF +M         IT+  +I   G    +S 
Sbjct: 127 RKPCLTSTYNTLIDLYGKAGRLKDAAE-VFSEMLKSGVAMDTITFNTMIFTCGSHGLLSE 185

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  + D++ +        T N  L  Y   G    A   +    N+G+ PD  +++ +  
Sbjct: 186 AESLLDKMEERRISPDTRTYNIFLSLYADAGNINAALECYWKIRNVGLVPDIVSHRTILH 245

Query: 305 AYTKANMKELVQKLLKRMEQN 325
                NM   V+ +++ M+++
Sbjct: 246 ILCGRNMVREVEAVIEEMKKS 266


>gi|410110091|gb|AFV61125.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           micrantha]
          Length = 406

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 141/294 (47%), Gaps = 6/294 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YNA+I        KAK   +
Sbjct: 14  GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFRE 69

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +MK      PN  +Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 70  ARSLISEMK-TAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMI 128

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +     +
Sbjct: 129 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIE 188

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSMI+ YGK     KA  + Q+M +    P+ ITY  II+++G    + RA  +
Sbjct: 189 QNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAML 248

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKL 301
           F +L   G ++       M+ AY   GL   A  LL E      +  D++ + L
Sbjct: 249 FQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHIL 302



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 142/298 (47%), Gaps = 6/298 (2%)

Query: 32  WLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI 91
           WL  +M       D  +Y+ LI       D +KA++     F ++K      P++V YN 
Sbjct: 3   WL-QKMEQDQVPGDLVLYSNLIELSRKLCDYSKAIS----IFSRLK-RSGFTPDLVAYNA 56

Query: 92  LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151
           ++    +A+   +  +L  E+  + + P+  +Y+ ++  Y +N    E  SV S M+  +
Sbjct: 57  MINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIK 116

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
           C  D+ T N++ID YG+     + +++F  +     +P + ++N+++  YG A L G+A 
Sbjct: 117 CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAI 176

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
           ++F+ M       + +TY  +I +YG      +A  +  E+   G +    T + ++  +
Sbjct: 177 HLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIW 236

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
              G    A +LF+   + GV  D   ++ +  AY +A +    ++LL  +++   +P
Sbjct: 237 GKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIP 294



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 149/331 (45%), Gaps = 15/331 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEM+ +G  P+ + Y+ L+T ++     
Sbjct: 43  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVEN--- 99

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   +AL  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ 
Sbjct: 100 -KKFLEALSVFSEMREI-KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 157

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++  YG   +  E   +   M+    + +++T+N +I  YGK    +K   + + +
Sbjct: 158 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEM 217

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P   T++++I  +GK     +A  +FQK+ +       I ++ +I  Y     V
Sbjct: 218 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLV 277

Query: 243 SRAREIFDELSK---LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           + A+ +  EL +   + +D  +  L          G   EA  +F  + + G   D + +
Sbjct: 278 AHAKRLLHELKRPDNIPRDTAIHILAGA-------GRIEEATYVFRQAIDAGEAKDITVF 330

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + +    +K      V ++  +M   G  P+
Sbjct: 331 ERMIHLLSKYKKYSNVVEVFDKMRGLGYFPD 361



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 127/265 (47%), Gaps = 1/265 (0%)

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L + QKM+  ++   ++V Y+ L+    +  +  +  ++F  L  S   PD+  YN +++
Sbjct: 1   LSWLQKME-QDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMIN 59

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +GK  + +E  S++S MK+    P+  +++ L+  Y + + F +   VF  +   K   
Sbjct: 60  VFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLL 119

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            L T N MI  YG+  +  +A+ +F  M  M   P+ ++Y  ++ +YG  +    A  +F
Sbjct: 120 DLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLF 179

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             + +   +  V T N+M+  Y       +A+ L +   + G+ P+S TY  +   + K 
Sbjct: 180 RLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKV 239

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
              +    L +++  +G+  ++  F
Sbjct: 240 GKLDRAAMLFQKLRSSGVEIDQILF 264



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 114/271 (42%), Gaps = 36/271 (13%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           +I V G+ G  + A  LF  MR  G  P+   YN L+  +      A+   +A+  F+ M
Sbjct: 127 MIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY----GDAELFGEAIHLFRLM 182

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +  +  + N+VTYN ++    +    ++ N L +E+    + P+  TY+ ++  +GK G 
Sbjct: 183 Q-RKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGK 241

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSY--------GKRQAFD--------------- 173
           +     +  +++S+  + D I F  +I +Y         KR   +               
Sbjct: 242 LDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHI 301

Query: 174 -----KMEQ---VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
                ++E+   VF+  + + E   +  F  MI    K +       VF KM  + Y P 
Sbjct: 302 LAGAGRIEEATYVFRQAIDAGEAKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPD 361

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLG 256
                 ++  YG      +A +++ E+ ++G
Sbjct: 362 SNVIAVVLNAYGKLQEFDKANDVYMEMQEVG 392



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I++ GK G+   A  LF ++R+SG   D  ++  +I A+    ++A  +A A    
Sbjct: 229 YSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY----ERAGLVAHAKRLL 284

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++K     +P+ +  +  +   A A  +++   +F++  ++  A DI  +  ++    K
Sbjct: 285 HELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEAKDITVFERMIHLLSK 339

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
                 +  V  +M+     PD     +++++YGK Q FDK   V+
Sbjct: 340 YKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVY 385


>gi|410110123|gb|AFV61141.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           macrophylla]
          Length = 381

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 141/294 (47%), Gaps = 6/294 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YNA+I        KAK   +
Sbjct: 2   GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFRE 57

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +MK      PN  +Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 58  ARSLISEMK-TAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMI 116

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +     +
Sbjct: 117 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIE 176

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSMI+ YGK     KA  + Q+M +    P+ ITY  II+++G    + RA  +
Sbjct: 177 QNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAML 236

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKL 301
           F +L   G ++       M+ AY   GL   A  LL E      +  D++ + L
Sbjct: 237 FQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHIL 290



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 130/263 (49%), Gaps = 1/263 (0%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +KA+  F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  +Y+ 
Sbjct: 21  SKAISIFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 79

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +    
Sbjct: 80  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 139

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + ++N+++  YG A L G+A ++F+ M       + +TY  +I +YG      +A 
Sbjct: 140 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKAN 199

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G +    T + ++  +   G    A +LF+   + GV  D   ++ +  AY
Sbjct: 200 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 259

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            +A +    ++LL  +++   +P
Sbjct: 260 ERAGLVAHAKRLLHELKRPDNIP 282



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 151/343 (44%), Gaps = 15/343 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEM+ +G  P+ + Y+ L+T ++     
Sbjct: 31  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVEN--- 87

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   +AL  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ 
Sbjct: 88  -KKFLEALSVFSEMREI-KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 145

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++  YG   +  E   +   M+    + +++T+N +I  YGK    +K   + + +
Sbjct: 146 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEM 205

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P   T++++I  +GK     +A  +FQK+ +       I ++ +I  Y     V
Sbjct: 206 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLV 265

Query: 243 SRAREIFDELSK---LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           + A+ +  EL +   + +D  +  L          G   EA  +F  + + G   D + +
Sbjct: 266 AHAKRLLHELKRPDNIPRDTAIHILAGA-------GRIEEATYVFRQAIDAGEVKDITVF 318

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           + +    +K      V ++  +M   G  P+       L  + 
Sbjct: 319 ERMIHLLSKXKKYSNVVEVFNKMRGLGYFPDSDVIAXVLNAYG 361



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 119/250 (47%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           ++V Y+ L+    +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  S++
Sbjct: 3   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 62

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
           S MK+    P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+ 
Sbjct: 63  SEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 122

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
            +  +A+ +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T 
Sbjct: 123 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 182

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N+M+  Y       +A+ L +   + G+ P+S TY  +   + K    +    L +++  
Sbjct: 183 NSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 242

Query: 325 NGIVPNKRFF 334
           +G+  ++  F
Sbjct: 243 SGVEIDQILF 252



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 114/271 (42%), Gaps = 36/271 (13%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           +I V G+ G  + A  LF  MR  G  P+   YN L+  +      A+   +A+  F+ M
Sbjct: 115 MIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY----GDAELFGEAIHLFRLM 170

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +  +  + N+VTYN ++    +    ++ N L +E+    + P+  TY+ ++  +GK G 
Sbjct: 171 Q-RKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGK 229

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSY--------GKRQAFD--------------- 173
           +     +  +++S+  + D I F  +I +Y         KR   +               
Sbjct: 230 LDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHI 289

Query: 174 -----KMEQ---VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
                ++E+   VF+  + + E   +  F  MI    K +       VF KM  + Y P 
Sbjct: 290 LAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKXKKYSNVVEVFNKMRGLGYFPD 349

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLG 256
                 ++  YG      +A +++ E+ ++G
Sbjct: 350 SDVIAXVLNAYGKLQEFDKANDVYMEMQEVG 380


>gi|410110083|gb|AFV61121.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           cujabensis]
          Length = 359

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 141/294 (47%), Gaps = 6/294 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YNA+I        KAK   +
Sbjct: 2   GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFRE 57

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +MK      PN  +Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 58  ARSLISEMKTXG-VMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMI 116

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +     +
Sbjct: 117 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIE 176

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSMI+ YGK     KA  + Q+M +    P+ ITY  II+++G    + RA  +
Sbjct: 177 QNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAML 236

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKL 301
           F +L   G ++       M+ AY   GL   A  LL E      +  D++ + L
Sbjct: 237 FQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHIL 290



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 129/263 (49%), Gaps = 1/263 (0%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +KA+  F ++K      P++V YN ++    +A+   +  +L  E+    + P+  +Y+ 
Sbjct: 21  SKAISIFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTXGVMPNTTSYST 79

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +    
Sbjct: 80  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 139

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + ++N+++  YG A L G+A ++F+ M       + +TY  +I +YG      +A 
Sbjct: 140 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKAN 199

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G +    T + ++  +   G    A +LF+   + GV  D   ++ +  AY
Sbjct: 200 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 259

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            +A +    ++LL  +++   +P
Sbjct: 260 ERAGLVAHAKRLLHELKRPDNIP 282



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 148/331 (44%), Gaps = 15/331 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEM+  G  P+ + Y+ L+T ++     
Sbjct: 31  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTXGVMPNTTSYSTLLTMYVEN--- 87

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   +AL  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ 
Sbjct: 88  -KKFLEALSVFSEMREI-KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 145

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++  YG   +  E   +   M+    + +++T+N +I  YGK    +K   + + +
Sbjct: 146 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEM 205

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P   T++++I  +GK     +A  +FQK+ +       I ++ +I  Y     V
Sbjct: 206 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLV 265

Query: 243 SRAREIFDELSK---LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           + A+ +  EL +   + +D  +  L          G   EA  +F  + + G   D + +
Sbjct: 266 AHAKRLLHELKRPDNIPRDTAIHILAGA-------GRIEEATYVFRQAIDAGEVKDITVF 318

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + +    +K      V ++  +M   G  P+
Sbjct: 319 ERMIHLLSKYKKYSNVVEVFDKMRGLGYFPD 349



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 119/250 (47%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           ++V Y+ L+    +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  S++
Sbjct: 3   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 62

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
           S MK+    P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+ 
Sbjct: 63  SEMKTXGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 122

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
            +  +A+ +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T 
Sbjct: 123 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 182

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N+M+  Y       +A+ L +   + G+ P+S TY  +   + K    +    L +++  
Sbjct: 183 NSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 242

Query: 325 NGIVPNKRFF 334
           +G+  ++  F
Sbjct: 243 SGVEIDQILF 252


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 147/320 (45%), Gaps = 8/320 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ L++V+ K+ Q   A++LF E       PD   +N LI        +   + +A   
Sbjct: 145 VYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLC----RVGGVDRAFEV 200

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH-ESILAPDIYTYNGVMDAY 131
           F+ M+    C P++VTYN L+    +A  V +   LFKE+   S  +PDI TY  ++  +
Sbjct: 201 FKDMESFG-CLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGF 259

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K+G +KE  ++   M  +  +P++ITFN+LID +GK     + E +++ + +      +
Sbjct: 260 CKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADV 319

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            TF S+I  Y +A         +  M     +P+  TY  +I      + ++ AR+   +
Sbjct: 320 VTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQ 379

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKAN 310
           +       K    N +++ +C  G   E +++ +        PD  T+ +L   +  K  
Sbjct: 380 IKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGR 439

Query: 311 MKELVQKLLKRMEQNGIVPN 330
           M E +  +  RM      P+
Sbjct: 440 MFEAIN-IFNRMLATRCAPD 458



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 131/302 (43%), Gaps = 4/302 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  ++ LI  + + G    A  +F +M + GC PD   YN LI        KA  + + 
Sbjct: 177 DTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLC----KANEVQRG 232

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F++++    C P+IVTY  ++    ++  + + + LF+E+  S + P++ T+N ++D
Sbjct: 233 CELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLID 292

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +GK G I E E++  +M    C  D++TF  LID Y +    +   + +  +      P
Sbjct: 293 GFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSP 352

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           T+ T+  +I    K     +A     ++      P    Y  +I  +    NV     I 
Sbjct: 353 TVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVIL 412

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+ +   D    T   ++  +C+ G   EA  +F         PD+ T   L     KA
Sbjct: 413 KEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATRCAPDNITVNSLISCLLKA 472

Query: 310 NM 311
            M
Sbjct: 473 GM 474



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 153/354 (43%), Gaps = 19/354 (5%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           ++ D+ +   L+  M +     +   L +E++    R +  VYN L++  +    K   +
Sbjct: 104 HLPDSKLLGFLVTWMAQASDFDMVKKLLAEVQGKEVRINSFVYNNLLSVLV----KQNQV 159

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            +A+  F++   M+   P+  T+NIL+R   +   VD+   +FK++      PD+ TYN 
Sbjct: 160 HEAIYLFKEYLVMQS-PPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNT 218

Query: 127 VMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
           +++   K   ++    +   ++S + C PDI+T+  +I  + K     +   +F+ +M S
Sbjct: 219 LINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRS 278

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
             +P + TFN +I  +GK     +AE +++KM     +   +T+  +I  Y     V+  
Sbjct: 279 GIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHG 338

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            + ++ +        V T   ++ A C      EA        N  + P    Y  +   
Sbjct: 339 LKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDG 398

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFF-------------LEALETFSSSLA 346
           + KA   +    +LK ME+    P+K  F              EA+  F+  LA
Sbjct: 399 FCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLA 452



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 142/335 (42%), Gaps = 12/335 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD---KAKALAKAL 70
           Y+ L+  + + G   L   +F  M + G  PD  +   L+T      D     K LA+  
Sbjct: 76  YNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEVQ 135

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           G        +  + N   YN LL    +   V +   LFKE       PD +T+N ++  
Sbjct: 136 G--------KEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRG 187

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM-HSKEKP 189
             + G +     V   M+S  C PD++T+N LI+   K     +  ++FK +   S   P
Sbjct: 188 LCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSP 247

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ S+I  + K+    +A  +F++M      P+ IT+  +I  +G   N++ A  ++
Sbjct: 248 DIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMY 307

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            +++       V T  ++++ YC  G        +       V+P   TY +L  A  K 
Sbjct: 308 RKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKE 367

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           N     +  L +++ + I+P    +   ++ F  +
Sbjct: 368 NRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKA 402



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 104/238 (43%), Gaps = 31/238 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--LHTRDKAKALA 67
           D   Y+ +I+   K G+ + A  LF EM  SG +P+   +N LI     +    +A+A+ 
Sbjct: 248 DIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMY 307

Query: 68  KALGYF--------------------QKMKGME--------RCKPNIVTYNILLRACAQA 99
           + + YF                    Q   G++           P + TY +L+ A  + 
Sbjct: 308 RKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKE 367

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
             +++      ++  S + P  + YN V+D + K G + E   +L  M+  +C PD +TF
Sbjct: 368 NRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTF 427

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
            +LI  +  +    +   +F  ++ ++  P   T NS+I    KA +  +A Y  +KM
Sbjct: 428 TILIIGHCVKGRMFEAINIFNRMLATRCAPDNITVNSLISCLLKAGMPNEA-YRIRKM 484



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 103/230 (44%), Gaps = 6/230 (2%)

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           TYN+L+R+  Q  + D VN +F  +      PD      ++    +      ++ +L+ +
Sbjct: 75  TYNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEV 134

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           +  + + +   +N L+    K+    +   +FK  +  +  P   TFN +I   G  R+ 
Sbjct: 135 QGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILI--RGLCRVG 192

Query: 208 G--KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL-SKLGKDMKVSTL 264
           G  +A  VF+ M +    P  +TY  +I      + V R  E+F E+ S+      + T 
Sbjct: 193 GVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTY 252

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-ANMKE 313
            +++  +C +G   EA  LFE     G+ P+  T+ +L   + K  N+ E
Sbjct: 253 TSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAE 302



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 90/221 (40%), Gaps = 1/221 (0%)

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN +M +  + G    +  V   M S+   PD      L+    +   FD ++++   +
Sbjct: 75  TYNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEV 134

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
              + +     +N+++    K     +A Y+F++   M+  P   T+  +I        V
Sbjct: 135 QGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGV 194

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYC-MNGLPTEADLLFENSHNMGVTPDSSTYKL 301
            RA E+F ++   G    V T N ++   C  N +    +L  E       +PD  TY  
Sbjct: 195 DRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTS 254

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           +   + K+   +    L + M ++GI PN   F   ++ F 
Sbjct: 255 IISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFG 295


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 151/329 (45%), Gaps = 9/329 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--D 61
           Q  +  D   Y+ +I  + K G+   A  + ++M + GC PD + +N LI A       +
Sbjct: 328 QEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLE 387

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           +A  LA+ L     +KG+    P++ T+NIL+ A  +  +      LF+E+  S  APD 
Sbjct: 388 EALDLAREL----TVKGL---SPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDE 440

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TYN ++D     G +     +L  M+SN C    +T+N +ID+  K+   ++ E+VF  
Sbjct: 441 VTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQ 500

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           +       +  TFN++I    KA+    A  + ++M      PS ITY  I+T Y    +
Sbjct: 501 MDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGD 560

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           + +A +I + ++  G ++ V T   ++   C  G    A  L       G+ P    Y  
Sbjct: 561 LKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNP 620

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + ++  + N       L + M + G  P+
Sbjct: 621 VIQSLFRRNNLRDALSLFREMTEVGEPPD 649



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 157/333 (47%), Gaps = 21/333 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+  +  + + G    A+ +   M   G  PD   YN +I    +   K   L +A
Sbjct: 299 DQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVI----NCLSKNGELDEA 354

Query: 70  LGYFQKMKGMER-CKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            G   +M  ++R C P+  T+N L+ A C+Q R +++   L +EL    L+PD+YT+N +
Sbjct: 355 KGIVNQM--VDRGCLPDTTTFNTLIVALCSQNR-LEEALDLARELTVKGLSPDVYTFNIL 411

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID---SYGKR-QAFDKMEQVFKSLM 183
           ++A  K G       +   MKS+ C PD +T+N+LID   S GK   A D +++     M
Sbjct: 412 INALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKE-----M 466

Query: 184 HSKEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
            S   P +  T+N++I    K     +AE VF +M A   + S +T+  +I        +
Sbjct: 467 ESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRI 526

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTEADLLFENSHNMGVTPDSSTYKL 301
             A E+ +++ K G      T N++L  YC  G L   AD+L   + N G   D  TY  
Sbjct: 527 DDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTAN-GFEIDVVTYGT 585

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           L     KA   ++  KLL+ M   GI P  + +
Sbjct: 586 LINGLCKAGRTQVALKLLRGMRIKGIRPTPKAY 618



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 138/306 (45%), Gaps = 8/306 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ LI  + K G   L + LF EM++SGC PD   YN LI  HL +  K   L  A
Sbjct: 404 DVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILID-HLCSMGK---LVNA 459

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L   ++M+    C  + VTYN ++ A  +   +++   +F ++    ++    T+N ++D
Sbjct: 460 LDLLKEMES-NGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLID 518

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K   I +   ++ +M     +P  IT+N ++  Y K+    K   + +++  +  + 
Sbjct: 519 GLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEI 578

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+ ++I    KA     A  + + M      P+   Y  +I      +N+  A  +F
Sbjct: 579 DVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLF 638

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEA--DLLFENSHNMGVTPDSSTYKLLYKAYT 307
            E++++G+     T   +    C  G P +   D L E   N G  P+ S++++L +   
Sbjct: 639 REMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMV-NKGFMPEFSSFRMLAEGLL 697

Query: 308 KANMKE 313
              M +
Sbjct: 698 NLGMDD 703



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 143/320 (44%), Gaps = 9/320 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           ADT +Y+ L+ V+ +  + +L   +++EM + G +PD    N LI A      +A  +  
Sbjct: 158 ADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALC----RAHQVRT 213

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A+   ++M       P+  T+  L++   +  +++    +  ++ E+  +P   T N ++
Sbjct: 214 AVLMLEEMSS-HAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLI 272

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + Y K G +++    + +  ++  +PD +T+N  +    +        +V   ++     
Sbjct: 273 NGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHD 332

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P + T+N++I    K     +A+ +  +M      P   T+  +I      + +  A ++
Sbjct: 333 PDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDL 392

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             EL+  G    V T N ++ A C  G P     LFE   + G  PD  TY +L      
Sbjct: 393 ARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHL-- 450

Query: 309 ANMKELVQ--KLLKRMEQNG 326
            +M +LV    LLK ME NG
Sbjct: 451 CSMGKLVNALDLLKEMESNG 470



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 135/327 (41%), Gaps = 12/327 (3%)

Query: 12  GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR---DKAKALAK 68
            +Y ++I  +G  G   L   L  EMR  G      V  + + ++   R   D    +  
Sbjct: 90  AVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRSFVESYARLRRFDDAVDLVRN 149

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
            L  F         + +   YN LL   A+   +  + +++ E+ +  + PD+ T N ++
Sbjct: 150 QLNTFG-------VQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLI 202

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            A  +   ++    +L  M S+   PD  TF  L+  + +  + +   +V   +M +   
Sbjct: 203 KALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCS 262

Query: 189 PTLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           PT  T N +I  Y K  R++    Y+ QK  A  + P  +TY   +       +VS A +
Sbjct: 263 PTRVTVNVLINGYCKMGRVEDALGYI-QKEIADGFEPDQVTYNTFVHCLCQNGHVSHALK 321

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + D + + G D  V T N ++     NG   EA  +     + G  PD++T+  L  A  
Sbjct: 322 VMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALC 381

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFF 334
             N  E    L + +   G+ P+   F
Sbjct: 382 SQNRLEEALDLARELTVKGLSPDVYTF 408



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/179 (18%), Positives = 69/179 (38%), Gaps = 1/179 (0%)

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR-LQGKAEY 212
           P    +  +I   G   AFD ME + + +     +       S + +Y + R      + 
Sbjct: 87  PSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRSFVESYARLRRFDDAVDL 146

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           V  ++           Y  ++ +      +     +++E++  G    V TLN +++A C
Sbjct: 147 VRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALC 206

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
                  A L+ E   +  V PD +T+  L + + +    E   ++  +M + G  P +
Sbjct: 207 RAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTR 265


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 147/329 (44%), Gaps = 10/329 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  + + G+    + +F +MR   C P    Y  ++ A   +  + +A+      F
Sbjct: 42  YTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAI----NLF 97

Query: 74  QKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            +M+  ER C+PNI TY +++ A  +   +++   +  E+ E  L P + TYN ++D Y 
Sbjct: 98  SEMR--ERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYC 155

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K GM++  + +L  M SN C P+  T+N LI  + +++   +   +   ++ S+  P++ 
Sbjct: 156 KEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVV 215

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+NS+I    K      A  +   M      P   TY   I        +  A  +F+ L
Sbjct: 216 TYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSL 275

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            + G         A+++ YC  G   +A+ L +        P+SSTY  L     K    
Sbjct: 276 KEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKV 335

Query: 313 ELVQKLLKRMEQNGI---VPNKRFFLEAL 338
           +    L++ M Q G+   VP     + A+
Sbjct: 336 QEALLLMESMIQKGLKCTVPTYTILIVAM 364



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 137/331 (41%), Gaps = 5/331 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++  +     Y+ LI    K+G    A  +   M ++ C P+   YN LI        + 
Sbjct: 137 EKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFC----RK 192

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           K + +A+    KM    R  P++VTYN L+    +   +D    L   ++E+ + PD +T
Sbjct: 193 KNVHRAMALLSKMLE-SRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWT 251

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+  +D   K G I+E   + + +K    K + + +  LID Y K    D    +   ++
Sbjct: 252 YSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRML 311

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                P   T+N++I    K R   +A  + + M       +  TY  +I       +  
Sbjct: 312 TEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFD 371

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  I D++   G    V    A + A+C  G   EA+ +       GV PD+ TY L+ 
Sbjct: 372 YAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVI 431

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            AY    +      +LKRM   G  P+   +
Sbjct: 432 DAYGGLGLLNPAFDVLKRMFDTGCDPSHHTY 462



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 148/345 (42%), Gaps = 19/345 (5%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K++   A+  IY+ LI    K G+   A  L   M    C P+ S YNALI      R  
Sbjct: 276 KEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKV 335

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +AL       QK  G+   K  + TY IL+ A  +  + D  + +  ++  S   PD+Y
Sbjct: 336 QEALLLMESMIQK--GL---KCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVY 390

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            Y   + A+   G IKE E ++S M      PD +T+ L+ID+YG     +    V K +
Sbjct: 391 IYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRM 450

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS--FITYECIITMYGYCD 240
             +   P+  T++ +I +  K  L  K    ++ +      P+  F     +  M  +  
Sbjct: 451 FDTGCDPSHHTYSCLIKHLLKEELTKK----YKNVALCDSIPNVFFADVADVWKMMKF-- 504

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
               A E+F+++ + G    ++T   ++   C  G    A  LF++ +  GV+P  + Y 
Sbjct: 505 --ETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYN 562

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 345
            L     +  +     +L+  M ++G +P     LE+L      L
Sbjct: 563 SLLNCCCELGIYGDAVRLVGAMMEHGHLP----LLESLNVLFCGL 603



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 142/353 (40%), Gaps = 20/353 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y++LI    +K     AM L S+M  S   P    YN+LI    H + K   L  A    
Sbjct: 182 YNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLI----HGQCKIGYLDSAYRLL 237

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             M       P+  TY++ +    +   +++ N LF  L E  +  +   Y  ++D Y K
Sbjct: 238 NLMNE-NGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCK 296

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + +  S+L RM +  C P+  T+N LID   K +   +   + +S++    K T+PT
Sbjct: 297 AGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPT 356

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +  +I+   K      A  +  +M +  Y P    Y   I  +    N+  A ++   + 
Sbjct: 357 YTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMF 416

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G      T   +++AY   GL   A  + +   + G  P   TY  L K      +KE
Sbjct: 417 ERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHL----LKE 472

Query: 314 LVQKLLKRMEQNGIVPNKRF-----------FLEALETFSSSLAGSQSGSAKT 355
            + K  K +     +PN  F           F  ALE F   L    S +  T
Sbjct: 473 ELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNINT 525



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 121/265 (45%), Gaps = 4/265 (1%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C+ N V+Y  L+    +   VD+   +FK++ E    P + TY  ++ A  ++G   E  
Sbjct: 35  CRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAI 94

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           ++ S M+   C+P+I T+ ++I++  K    ++  ++   ++     P++PT+N++I  Y
Sbjct: 95  NLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGY 154

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDM 259
            K  +   A+ +   M +    P+  TY  +I   G+C   NV RA  +  ++ +     
Sbjct: 155 CKEGMVEAAQEILDLMHSNSCNPNERTYNELIC--GFCRKKNVHRAMALLSKMLESRLTP 212

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            V T N+++   C  G    A  L    +  GV PD  TY +      K    E    L 
Sbjct: 213 SVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLF 272

Query: 320 KRMEQNGIVPNKRFFLEALETFSSS 344
             +++ GI  N+  +   ++ +  +
Sbjct: 273 NSLKEKGIKANEVIYTALIDGYCKA 297



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 136/346 (39%), Gaps = 35/346 (10%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +  +   + D   YS  I  + KKG+   A  LF+ ++  G + +  +Y ALI  +    
Sbjct: 239 LMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYC--- 295

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            KA  +  A     +M   E C PN  TYN L+    + R V +   L + + +  L   
Sbjct: 296 -KAGKMDDANSLLDRML-TEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCT 353

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TY  ++ A  K G       +L +M S+  +PD+  +   I ++  R    + E +  
Sbjct: 354 VPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMS 413

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM----- 235
            +      P   T+  +I  YG   L   A  V ++M      PS  TY C+I       
Sbjct: 414 MMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEE 473

Query: 236 -------YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
                     CD++      F +++ + K MK  T                A  LFE   
Sbjct: 474 LTKKYKNVALCDSIPNV--FFADVADVWKMMKFET----------------ALELFEKML 515

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
             G +P+ +TY  L     K     + QKL   M + G+ P++  +
Sbjct: 516 EHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIY 561



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 81/189 (42%)

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           SV + M    C+ + +++  LI    +    D+   +FK +      PT+ T+  ++   
Sbjct: 25  SVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHAL 84

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            ++  + +A  +F +M      P+  TY  +I        +   R I DE+ + G    V
Sbjct: 85  FESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSV 144

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T NA+++ YC  G+   A  + +  H+    P+  TY  L   + +         LL +
Sbjct: 145 PTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSK 204

Query: 322 MEQNGIVPN 330
           M ++ + P+
Sbjct: 205 MLESRLTPS 213



 Score = 45.4 bits (106), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 46/235 (19%), Positives = 90/235 (38%), Gaps = 15/235 (6%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  +R  + D   Y+ +I   G  G    A  +   M ++GC P    Y+ LI  HL   
Sbjct: 414 MMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIK-HLLKE 472

Query: 61  DKAKALAKALGYFQKMKGMERCK--PNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
           +  K          K K +  C   PN+   ++      +    +    LF+++ E   +
Sbjct: 473 ELTK----------KYKNVALCDSIPNVFFADV--ADVWKMMKFETALELFEKMLEHGCS 520

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           P+I TY  ++    K G +   + +   M      P    +N L++   +   +    ++
Sbjct: 521 PNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRL 580

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
             ++M     P L + N +     +   + KA+ VF  +    Y    + ++ +I
Sbjct: 581 VGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKILI 635


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 151/354 (42%), Gaps = 44/354 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  ++ VM K GQT LAM L  +M     + D   Y+ +I        K  +L  A   F
Sbjct: 215 YGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLC----KDGSLDNAFNLF 270

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+ ++  K +I+ Y  L+R    A   D    L +++ +  + PD+  ++ ++D + K
Sbjct: 271 NEME-IKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVK 329

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++E E +   M      PD +T+  LID + K    DK   +   ++     P + T
Sbjct: 330 EGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRT 389

Query: 194 FNSMIINYGKARL---------------------------QGKAEY--------VFQKMT 218
           FN +I  Y KA L                           QG  E         +FQ+M 
Sbjct: 390 FNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMV 449

Query: 219 AMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           + +  P  ++Y+  I + G CDN    +A EIF+++ K   ++ +   N ++   C    
Sbjct: 450 SRRVRPDIVSYK--ILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASK 507

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +A  LF +    GV PD  TY ++     K         L ++ME++G  PN
Sbjct: 508 VDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPN 561



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 153/351 (43%), Gaps = 29/351 (8%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR    DT  Y+ LI    K+ Q   A  +   M + GC P+   +N LI  +     KA
Sbjct: 345 QRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYC----KA 400

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             +   L  F+KM  +     + VTYN L++   +   ++    LF+E+    + PDI +
Sbjct: 401 NLIDDGLELFRKMS-LRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVS 459

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++D    NG  ++   +  +++ ++ + DI  +N++I         D    +F SL 
Sbjct: 460 YKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLP 519

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
               KP + T+N MI    K     +A+ +F+KM    ++P+  TY  +I  +    + +
Sbjct: 520 LKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDAT 579

Query: 244 RAREIFDELSKLGKDMKVSTL----------------------NAMLEAYCM--NGLPTE 279
           ++ ++ +E+ + G  +  STL                        +L  +C+  N    +
Sbjct: 580 KSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYD 639

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           A  LF+N   MG  P+  TY  + K     NM   V  +L +M + G  PN
Sbjct: 640 APTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPN 690



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 144/328 (43%), Gaps = 13/328 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  DT  +S LI  +  +G+   A+ L   M   G +P     NAL+   L    K   +
Sbjct: 138 YEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNG-LCLNGK---V 193

Query: 67  AKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           + A+    +M   G +   PN VTY  +L+   ++        L +++ E  +  D   Y
Sbjct: 194 SDAVLLIDRMVETGFQ---PNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKY 250

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           + ++D   K+G +    ++ + M+    K DII +  LI  +     +D   ++ + ++ 
Sbjct: 251 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK 310

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNV 242
            K  P +  F+++I  + K     +AE + ++M     +P  +TY  +I   G+C  + +
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLID--GFCKENQL 368

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  + D +   G    + T N ++  YC   L  +   LF      GV  D+ TY  L
Sbjct: 369 DKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTL 428

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
            + + +    E+ ++L + M    + P+
Sbjct: 429 IQGFCELGKLEVAKELFQEMVSRRVRPD 456



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 29/309 (9%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R  +ADT  Y+ LI    + G+  +A  LF EM +   RPD   Y  L+       +  K
Sbjct: 416 RGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEK 475

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           AL      F+K++   + + +I  YNI++     A  VD    LF  L    + PD+ TY
Sbjct: 476 ALE----IFEKIE-KSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTY 530

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY---------------GKR 169
           N ++    K G + E + +  +M+ +   P+  T+N+LI ++                KR
Sbjct: 531 NIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKR 590

Query: 170 QAFDKMEQVFK-------SLMHSKEKPTLPTFNSMIINYGKARLQG--KAEYVFQKMTAM 220
             F       +        ++ +  +P + TF +++  +          A  +F+ M AM
Sbjct: 591 CGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAM 650

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
            Y P+ +TY  +I      + +S+   + D++ + G      T +  +   C   L   A
Sbjct: 651 GYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGSA 710

Query: 281 DLLFENSHN 289
            LL     N
Sbjct: 711 ILLLRKMEN 719



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 6/195 (3%)

Query: 137 IKEMESV--LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           IKE ++V     M  ++ +P +I F+ L     + + +D +  + K +        L T 
Sbjct: 51  IKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTL 110

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDEL 252
           + MI    + R    A     K+  + Y P  +T+  +I   G C    VS A E+ D +
Sbjct: 111 SIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLIN--GLCLEGRVSEALELVDRM 168

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            ++G    + TLNA++   C+NG  ++A LL +     G  P+  TY  + K   K+   
Sbjct: 169 VEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQT 228

Query: 313 ELVQKLLKRMEQNGI 327
            L  +LL++ME+  I
Sbjct: 229 ALAMELLRKMEERKI 243



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 125/314 (39%), Gaps = 9/314 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ LF EM  S  RP P + +      +  R K   L   L    ++KG+     N+ T 
Sbjct: 56  AVDLFQEMTRS--RPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAH---NLYTL 110

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           +I++  C + R +    +   ++ +    PD  T++ +++     G + E   ++ RM  
Sbjct: 111 SIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVE 170

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
              KP +IT N L++             +   ++ +  +P   T+  ++    K+     
Sbjct: 171 MGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTAL 230

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAM 267
           A  + +KM   K     + Y  II   G C +  +  A  +F+E+   G    +     +
Sbjct: 231 AMELLRKMEERKIKLDAVKYSIIID--GLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTL 288

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +  +C  G   +   L  +     +TPD   +  L   + K       ++L K M Q GI
Sbjct: 289 IRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGI 348

Query: 328 VPNKRFFLEALETF 341
            P+   +   ++ F
Sbjct: 349 SPDTVTYTSLIDGF 362


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 152/336 (45%), Gaps = 17/336 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  ++  + K G    A+ +F  M++  C P    YN LI    ++R  A    KAL  F
Sbjct: 13  YDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLI----NSRCNAGEFGKALDLF 68

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           Q MK  +R +P+  TYN L+     + N +    L  E+ +  +A +++TY+ ++ +  K
Sbjct: 69  QSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVK 128

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
               +E   VL  M +  C PD+  FN ++  + +    +K  +V++ ++ S  KP   +
Sbjct: 129 EAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVS 188

Query: 194 FNSMIINYGKARLQGKAEYVFQ-----KMTAMKYTPSFITYECIITMYGYC--DNVSRAR 246
           ++ +I  +G A++ GK +   +      M A  Y P+ IT+  +I  +G C    + +A 
Sbjct: 189 YHILI--HGLAKI-GKLDESLKILSEMAMRAAGYVPNVITFSTLI--HGLCRTGELEKAL 243

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+F  + + G      T   ++   C      +A  LFE      + PD+  Y  L   Y
Sbjct: 244 EVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGY 303

Query: 307 TKANMKELVQKLLKRMEQN-GIVPNKRFFLEALETF 341
            K    +  +KL + M    G+ P    F   ++ F
Sbjct: 304 CKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGF 339



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 166/352 (47%), Gaps = 28/352 (7%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M++++    D   Y+ LI+ +   G T  A  L SEMR+     +   Y+++I       
Sbjct: 71  MKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSII------- 123

Query: 61  DKAKALAKALGYFQKMKGMER-----CKPNIVTYNILLRACAQARNVDQVNALFKELHES 115
              K+L K     +  K +E      C P++  +N +++  A++ N+++   +++ + ES
Sbjct: 124 ---KSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVES 180

Query: 116 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM--KSNQCKPDIITFNLLIDSYGKRQAFD 173
              PD  +Y+ ++    K G + E   +LS M  ++    P++ITF+ LI    +    +
Sbjct: 181 GYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELE 240

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           K  +VF S++ +  KP   T+ ++I    +A    +A  +F+KMT     P  + Y  +I
Sbjct: 241 KALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLI 300

Query: 234 TMYGYC--DNVSRAREIFDELS-KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
              GYC   ++  A +++ E+S   G    + T N +++ +C  G    A+ L       
Sbjct: 301 A--GYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTK 358

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           G+  D+ TY++L    ++A   +   ++ K+M +      K+F L+ +   S
Sbjct: 359 GLAADTCTYRILIAGLSRATKLDEALEVYKQMRE------KKFLLDPVSCVS 404



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 131/294 (44%), Gaps = 8/294 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK--PNIV 87
           A  ++  M  SG +PD   Y+ LI    H   K   L ++L    +M  M      PN++
Sbjct: 170 AREVYQHMVESGYKPDNVSYHILI----HGLAKIGKLDESLKILSEM-AMRAAGYVPNVI 224

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           T++ L+    +   +++   +F  + E+   P+ YTY  ++    +   + +   +  +M
Sbjct: 225 TFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKM 284

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARL 206
                 PD + +N LI  Y KR + D+ E++++ +      +PT+ TFN++I  + K   
Sbjct: 285 TQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGK 344

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
            G+A  +  +M          TY  +I        +  A E++ ++ +    +   +  +
Sbjct: 345 LGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVS 404

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
            +   C  G   +A  +FE +   G  P+  T+++L ++  K    E  QKL++
Sbjct: 405 FVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLME 458



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 4/181 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LIA + +  +   A  LF +M  +   PD   YN+LI  +     K  ++ +A   +
Sbjct: 261 YTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYC----KRGSMDEAEKLY 316

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M G    +P IVT+N L+    +   + + N L  E+    LA D  TY  ++    +
Sbjct: 317 REMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSR 376

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              + E   V  +M+  +   D ++    +    K    D+   VF++   S   P   T
Sbjct: 377 ATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPET 436

Query: 194 F 194
           F
Sbjct: 437 F 437



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 81/185 (43%), Gaps = 1/185 (0%)

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           M   +C      ++ ++ S  K     +  +VF+++      P+L T+N +I +   A  
Sbjct: 1   MSKAKCAIGGDAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGE 60

Query: 207 QGKAEYVFQKMTAMKYT-PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
            GKA  +FQ M   K   P   TY  +I+      N   AR++  E+        V T +
Sbjct: 61  FGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYS 120

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
           +++++      P E+  + E     G  PD   +  + + + ++N  E  +++ + M ++
Sbjct: 121 SIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVES 180

Query: 326 GIVPN 330
           G  P+
Sbjct: 181 GYKPD 185



 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 10/159 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRN-SGCRPDPSVYNALITA--HLHTRDKAKAL 66
           D   Y+ LIA   K+G    A  L+ EM   +G +P    +N LI     L    +A  L
Sbjct: 292 DAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANEL 351

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
              +G     KG+     +  TY IL+   ++A  +D+   ++K++ E     D  +   
Sbjct: 352 VAEMG----TKGL---AADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVS 404

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
            +    K G I +  +V    + +   P+  TF +L +S
Sbjct: 405 FVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSES 443


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 155/334 (46%), Gaps = 15/334 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R +  D   YS +I  + K G T +A+ L  +M   GC+P+   Y  +I +      K 
Sbjct: 190 RRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLC----KD 245

Query: 64  KALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             +  A+    +M  +G+    P++VTY+ +L       ++++   LF E+    + P+ 
Sbjct: 246 TLVNDAMDLLSEMVDRGI---PPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNT 302

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            T+  ++D   K GM+ E   V   M     +P+  T+N L+D Y      D+ ++V   
Sbjct: 303 VTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDI 362

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++     P + ++N +I  Y K R   +A+ +  +M+  + TP  +TY  +  M G C  
Sbjct: 363 MVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTL--MQGLC-Q 419

Query: 242 VSRARE---IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
           V R +E   +F E+   G    + T + +L+  C +G   EA  L ++     + PD   
Sbjct: 420 VGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVL 479

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
           Y +L +    A   E+ ++L  ++  +GI P  R
Sbjct: 480 YNILIEGMFIAGKLEVAKELFSKLFADGIQPTIR 513



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 146/324 (45%), Gaps = 19/324 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + K      AM L SEM + G  PD   Y+ +    LH       L +A   F
Sbjct: 235 YTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTI----LHGFCSLGHLNEATILF 290

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M G     PN VT+ IL+    +   V +   +F+ + +    P+ YTYN +MD Y  
Sbjct: 291 NEMVG-RNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCL 349

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           N  + E + VL  M    C P + ++N+LI+ Y KR+  D+ + +   +   +  P   T
Sbjct: 350 NNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVT 409

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +++++    +     +A  +F++M +    P  +TY  ++   G C +        DE  
Sbjct: 410 YSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLD--GLCKHGH-----LDEAL 462

Query: 254 KLGKDMKVSTL-------NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           KL K M+ S +       N ++E   + G    A  LF      G+ P   TY ++ K  
Sbjct: 463 KLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGL 522

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K  + +   +L ++ME +G +PN
Sbjct: 523 LKEGLSDEAYELFRKMEDDGFLPN 546



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 140/319 (43%), Gaps = 9/319 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           + + +  + KK Q    + L ++M   G   +    N LI           A++  LG  
Sbjct: 95  FGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAIS-VLGKM 153

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+      +P+ +T+N L+        + +   LF E+      PD+ +Y+ V++   K
Sbjct: 154 FKLG----IQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCK 209

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G       +L +M+   CKP+++ +  +IDS  K    +    +   ++     P + T
Sbjct: 210 SGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVT 269

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDE 251
           +++++  +       +A  +F +M      P+ +T+  ++   G C    VS AR +F+ 
Sbjct: 270 YSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVD--GLCKEGMVSEARCVFEA 327

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           ++K G +    T NA+++ YC+N    EA  + +   + G  P   +Y +L   Y K   
Sbjct: 328 MTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRR 387

Query: 312 KELVQKLLKRMEQNGIVPN 330
            +  + LL  M +  + P+
Sbjct: 388 LDEAKSLLVEMSEKELTPD 406



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 9/218 (4%)

Query: 37  MRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALGYFQKMKGMERCKPNIVTYNILLR 94
           M + GC P    YN LI  +   R  D+AK+L   +         +   P+ VTY+ L++
Sbjct: 363 MVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSE-------KELTPDTVTYSTLMQ 415

Query: 95  ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
              Q     +   LFKE+  S L PD+ TY+ ++D   K+G + E   +L  M+ ++ +P
Sbjct: 416 GLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEP 475

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           DI+ +N+LI+        +  +++F  L     +PT+ T+  MI    K  L  +A  +F
Sbjct: 476 DIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELF 535

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           +KM    + P+  +Y  II  +    + S A  + DE+
Sbjct: 536 RKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEM 573



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 116/266 (43%), Gaps = 1/266 (0%)

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           ++  AL  F +M  M   +P++V +   L + A+ +    V +L  ++    +  ++Y+ 
Sbjct: 72  SIDDALASFYRMLRMNP-RPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSL 130

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N +++   +   +    SVL +M     +PD ITFN LI+         +   +F  ++ 
Sbjct: 131 NILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVR 190

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
              +P + +++++I    K+     A  + +KM      P+ + Y  II        V+ 
Sbjct: 191 RGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVND 250

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A ++  E+   G    V T + +L  +C  G   EA +LF       V P++ T+ +L  
Sbjct: 251 AMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVD 310

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
              K  M    + + + M + G  PN
Sbjct: 311 GLCKEGMVSEARCVFEAMTKKGAEPN 336



 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 40/200 (20%), Positives = 74/200 (37%), Gaps = 4/200 (2%)

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
           RM     +P ++ F   + S  K++ +  +  +   +        + + N +I    +  
Sbjct: 82  RMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLN 141

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVST 263
               A  V  KM  +   P  IT+  +I   G C    +  A  +F+E+ + G    V +
Sbjct: 142 HVVFAISVLGKMFKLGIQPDAITFNTLIN--GRCIEGEIKEAVGLFNEMVRRGHQPDVIS 199

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            + ++   C +G  + A  L       G  P+   Y  +  +  K  +      LL  M 
Sbjct: 200 YSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMV 259

Query: 324 QNGIVPNKRFFLEALETFSS 343
             GI P+   +   L  F S
Sbjct: 260 DRGIPPDVVTYSTILHGFCS 279


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 143/321 (44%), Gaps = 6/321 (1%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T IY+ LIA+  K      A+ LF EMR+  CRPD   Y  LI        KA  + +A 
Sbjct: 232 TKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRG----LGKAGRIDEAY 287

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
            +F +M+  E C+P+ V  N ++    +A  +D    LF+E+      P + TYN ++ A
Sbjct: 288 HFFCEMQ-REGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKA 346

Query: 131 -YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +       E+ S   RMK +   P   T+++LID + K    +K   + + +      P
Sbjct: 347 LFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPP 406

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               + S+I   GKA+    A  +FQ++     + S   Y  +I   G    +  A  +F
Sbjct: 407 CPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMF 466

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE++KLG    V   NA++      G+  EA          G  PD ++Y ++     K 
Sbjct: 467 DEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKT 526

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
                  ++L  M+Q+ + P+
Sbjct: 527 GGPHRAMEMLSNMKQSTVRPD 547



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 148/318 (46%), Gaps = 6/318 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y++LI  +GK G+   A   F EM+  GCRPD    N +I    +   KA  L  A
Sbjct: 266 DVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMI----NFLGKAGRLDDA 321

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARN-VDQVNALFKELHESILAPDIYTYNGVM 128
           +  FQ+M+ + RC P++VTYN +++A  ++++   +V + F+ + ES ++P  +TY+ ++
Sbjct: 322 MKLFQEMETL-RCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILI 380

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D + K   +++   +L  M      P    +  LID+ GK + +D   ++F+ L  +   
Sbjct: 381 DGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGS 440

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
            +   +  MI + GKA     A  +F +M  +   P    Y  +++       +  A   
Sbjct: 441 SSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALST 500

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
              + + G    +++ N +L      G P  A  +  N     V PD  +Y  +  A + 
Sbjct: 501 MRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSH 560

Query: 309 ANMKELVQKLLKRMEQNG 326
           A M E   KL+K M   G
Sbjct: 561 AGMFEEASKLMKEMNTLG 578



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 135/314 (42%), Gaps = 9/314 (2%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S ++ ++G     R A+ +F +++   C+P    YN++I   +H         K    + 
Sbjct: 130 SDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHE----GQYEKVHQLYN 185

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M     C P+ VTY+ L+ A  +    D    L  E+ E  + P    Y  ++  + K 
Sbjct: 186 EMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKF 245

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
                  S+   M+   C+PD+ T+  LI   GK    D+    F  +     +P     
Sbjct: 246 NDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFM 305

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI---FDE 251
           N+MI   GKA     A  +FQ+M  ++  PS +TY  II      ++ SRA E+   F+ 
Sbjct: 306 NNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIK--ALFESKSRASEVPSWFER 363

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G      T + +++ +C      +A +L E     G  P  + Y  L  A  KA  
Sbjct: 364 MKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKR 423

Query: 312 KELVQKLLKRMEQN 325
            +L  +L + +++N
Sbjct: 424 YDLACELFQELKEN 437



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 112/229 (48%), Gaps = 7/229 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI    K  +   AM L  EM   G  P P+ Y +LI A      KAK    A   F
Sbjct: 376 YSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDA----LGKAKRYDLACELF 431

Query: 74  QKMKGMERCKPNIV-TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           Q++K  E C  +    Y ++++   +A  +D    +F E+++   APD+Y YN +M    
Sbjct: 432 QELK--ENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLA 489

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + GM+ E  S + RM+ + C PDI ++N++++   K     +  ++  ++  S  +P + 
Sbjct: 490 RTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVV 549

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++N+++     A +  +A  + ++M  + +    ITY  I+   G  D+
Sbjct: 550 SYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGKVDH 598



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 121/301 (40%), Gaps = 4/301 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT   + +I  +GK G+   AM LF EM    C P    YN +I A   ++ +A  +   
Sbjct: 301 DTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVP-- 358

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
             +F++MK      P+  TY+IL+    +   +++   L +E+ E    P    Y  ++D
Sbjct: 359 -SWFERMKE-SGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLID 416

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A GK         +   +K N        + ++I   GK    D    +F  +      P
Sbjct: 417 ALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAP 476

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  +N+++    +  +  +A    ++M      P   +Y  I+          RA E+ 
Sbjct: 477 DVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEML 536

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             + +      V + N +L A    G+  EA  L +  + +G   D  TY  + +A  K 
Sbjct: 537 SNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGKV 596

Query: 310 N 310
           +
Sbjct: 597 D 597



 Score = 45.1 bits (105), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 45/236 (19%), Positives = 96/236 (40%), Gaps = 9/236 (3%)

Query: 102 VDQVNALFKELHESILAPDIYT----YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           V+Q   ++K + E +  P         + V+   G   M+++  ++  ++K+ +C+P   
Sbjct: 103 VEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQ 162

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP---TFNSMIINYGKARLQGKAEYVF 214
            +N +I        ++K+ Q++  +  S E    P   T++++I  + K   +  A  + 
Sbjct: 163 AYNSMIIMLMHEGQYEKVHQLYNEM--STEGHCFPDTVTYSALISAFCKLGRRDSAIQLL 220

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
            +M  +   P+   Y  +I ++   ++   A  +F+E+        V T   ++      
Sbjct: 221 NEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKA 280

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           G   EA   F      G  PD+     +     KA   +   KL + ME    +P+
Sbjct: 281 GRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPS 336


>gi|413926076|gb|AFW66008.1| hypothetical protein ZEAMMB73_411794 [Zea mays]
          Length = 633

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 146/332 (43%), Gaps = 29/332 (8%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT-----AHLHTRDKA----- 63
           Y+ +I  +GK      A+++ S+M  S CRP+   Y+ ++        LH  ++      
Sbjct: 291 YNTVIEALGKNKMVDEAIFMLSKMIESDCRPNQFTYSIMLDVLSTGGQLHRLNEILDICS 350

Query: 64  ------------KALAK------ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQV 105
                       KAL K      A   F +M      K +   +  +L A   A    + 
Sbjct: 351 GCLNRPVYSYLIKALCKSGHASEAHSVFCRMWNSHE-KGDRYAFVSMLEALCNAEKTTEA 409

Query: 106 NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
             L   + E  +  D+  YN +  A GK   +  M S+   M++N   PD+ T+N++I S
Sbjct: 410 IDLLHMMPEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMISS 469

Query: 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
           +G+    DK  ++F+ +     KP + T+NSMI   GK     +A  +F+ M    Y P 
Sbjct: 470 FGRVGLVDKASELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPD 529

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
             TY  +I  +G  + V  A  +FDE+   G    + T N +L+     G  TEA   +E
Sbjct: 530 VFTYSILIECFGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKTTEAHKFYE 589

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
                G+TPDS TY +L +  +++     ++K
Sbjct: 590 TLKQQGLTPDSITYSILERLESRSQRTVRIRK 621



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 146/328 (44%), Gaps = 8/328 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ +   D   Y+ LI + GK G+T   + L  EM + GC  +   YN +I A      K
Sbjct: 245 KQNYCDPDAYTYTILIRMSGKAGKTTKFVSLLEEMVSEGCVLNLIAYNTVIEA----LGK 300

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K + +A+    KM   + C+PN  TY+I+L   +    + ++N +  ++    L   +Y
Sbjct: 301 NKMVDEAIFMLSKMIESD-CRPNQFTYSIMLDVLSTGGQLHRLNEIL-DICSGCLNRPVY 358

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y  ++ A  K+G   E  SV  RM ++  K D   F  ++++    +   +   +   +
Sbjct: 359 SY--LIKALCKSGHASEAHSVFCRMWNSHEKGDRYAFVSMLEALCNAEKTTEAIDLLHMM 416

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                   +  +N +    GK +       ++  M A    P   TY  +I+ +G    V
Sbjct: 417 PEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMISSFGRVGLV 476

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A E+F+E+        V T N+M+     NG   EA +LF++    G  PD  TY +L
Sbjct: 477 DKASELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSIL 536

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
            + + K+N  ++   L   M   G +PN
Sbjct: 537 IECFGKSNKVDMACSLFDEMVAQGCIPN 564



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 103/195 (52%), Gaps = 5/195 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  ++    D G+Y+ + + +GK  Q      L+  MR +G  PD   YN +I++     
Sbjct: 415 MMPEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMISSF---- 470

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +   + KA   F++M+    CKP++VTYN ++    +  ++D+ + LFK++ E    PD
Sbjct: 471 GRVGLVDKASELFEEMED-GSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPD 529

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           ++TY+ +++ +GK+  +    S+   M +  C P+I+T+N+L+D   +R    +  + ++
Sbjct: 530 VFTYSILIECFGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKTTEAHKFYE 589

Query: 181 SLMHSKEKPTLPTFN 195
           +L      P   T++
Sbjct: 590 TLKQQGLTPDSITYS 604



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 136/346 (39%), Gaps = 43/346 (12%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           L+ +   +     AM L +EM   G   + S  N L+   +      + L  A  +  ++
Sbjct: 125 LVLLFSNRADPAEAMRLIAEMERDGVPGNISTVNLLVGMGVEV---GRCLDLASKWGLRL 181

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
            G         TY  L++A  ++R V +   +++++       DI+ YN +++A  K GM
Sbjct: 182 NG--------YTYKCLVQAHLRSREVWKGFEVYEKMRRKGYKLDIFAYNMLLNALAKAGM 233

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           + +   V   MK N C PD  T+ +LI   GK     K   + + ++       L  +N+
Sbjct: 234 VDQAYQVFEDMKQNYCDPDAYTYTILIRMSGKAGKTTKFVSLLEEMVSEGCVLNLIAYNT 293

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD------ 250
           +I   GK ++  +A ++  KM      P+  TY  ++ +      + R  EI D      
Sbjct: 294 VIEALGKNKMVDEAIFMLSKMIESDCRPNQFTYSIMLDVLSTGGQLHRLNEILDICSGCL 353

Query: 251 ----------ELSKLGKDMKVSTL----------------NAMLEAYCMNGLPTEADLLF 284
                      L K G   +  ++                 +MLEA C     TEA  L 
Sbjct: 354 NRPVYSYLIKALCKSGHASEAHSVFCRMWNSHEKGDRYAFVSMLEALCNAEKTTEAIDLL 413

Query: 285 ENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                 G+T D   Y +++ A  K      +  L   M  NG+VP+
Sbjct: 414 HMMPEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPD 459



 Score = 44.7 bits (104), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 5/92 (5%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +++ Y  D   YS LI   GK  +  +A  LF EM   GC P+   YN L+   L  R K
Sbjct: 522 QEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLDC-LERRGK 580

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLR 94
                +A  +++ +K  +   P+ +TY+IL R
Sbjct: 581 T---TEAHKFYETLK-QQGLTPDSITYSILER 608


>gi|302776756|ref|XP_002971525.1| hypothetical protein SELMODRAFT_95815 [Selaginella moellendorffii]
 gi|300160657|gb|EFJ27274.1| hypothetical protein SELMODRAFT_95815 [Selaginella moellendorffii]
          Length = 356

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 139/293 (47%), Gaps = 7/293 (2%)

Query: 49  YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL 108
           YNA+I A+   +    A      Y+Q +   E   P+ VTY+IL+      +N   ++ L
Sbjct: 33  YNAMIAAYYQAKRPKDAWDV---YYQMLA--EGIDPDDVTYDILV--SGSGKNGYPIDRL 85

Query: 109 FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
           F E+    +A  + +YN V+ A+ K G I ++E V+  M   + +PD+ +FN LI +Y  
Sbjct: 86  FLEIKSRGVALTLRSYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAAYAM 145

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
            +  ++  QVF ++  +   P + T+ ++I  + ++ +  +A  +F++M   K  P F  
Sbjct: 146 SRKPERGLQVFSNMKAAGVLPDIVTYTTLIQMFSRSAMHKEAIEMFEEMVVNKCQPDFFV 205

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
           Y  ++++YG    V+ A  IF  L   G    + T  +++ A+   GL  E+   F    
Sbjct: 206 YSLLVSVYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQME 265

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
             G   D      +  AY KA M      LL R+   G+ PN+  +   +E F
Sbjct: 266 AYGCRADVHLLNTMIDAYAKAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGF 318



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 145/300 (48%), Gaps = 13/300 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---HLHTRDKAKALAKAL 70
           Y+ +IA   +  + + A  ++ +M   G  PD   Y+ L++    + +  D+     K+ 
Sbjct: 33  YNAMIAAYYQAKRPKDAWDVYYQMLAEGIDPDDVTYDILVSGSGKNGYPIDRLFLEIKSR 92

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           G    ++          +YN+++ A  +  ++D+V  + +E+    L PD++++N ++ A
Sbjct: 93  GVALTLR----------SYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAA 142

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           Y  +   +    V S MK+    PDI+T+  LI  + +     +  ++F+ ++ +K +P 
Sbjct: 143 YAMSRKPERGLQVFSNMKAAGVLPDIVTYTTLIQMFSRSAMHKEAIEMFEEMVVNKCQPD 202

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
              ++ ++  YGKA L   A  +F ++    + P+ +TY  +I+ + +   +  +R+ F 
Sbjct: 203 FFVYSLLVSVYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFS 262

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           ++   G    V  LN M++AY   G+  +A  L       GV P+ ++Y ++ + +  A 
Sbjct: 263 QMEAYGCRADVHLLNTMIDAYAKAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGFLHAG 322



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 89/175 (50%), Gaps = 5/175 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ LI +  +    + A+ +F EM  + C+PD  VY+ L++ +     KA  +A
Sbjct: 165 LPDIVTYTTLIQMFSRSAMHKEAIEMFEEMVVNKCQPDFFVYSLLVSVY----GKAGLVA 220

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            AL  F +++ +E  +PNIVTY  L+ A      +++    F ++       D++  N +
Sbjct: 221 DALLIFHRLQ-LEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVHLLNTM 279

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +DAY K GM+ +  ++L R+ +    P+  ++ ++++ +      D+    + S+
Sbjct: 280 IDAYAKAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGFLHAGHVDEALAAYASM 334



 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 2/154 (1%)

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           L  +N+MI  Y +A+    A  V+ +M A    P  +TY+ +++  G   N      +F 
Sbjct: 30  LRPYNAMIAAYYQAKRPKDAWDVYYQMLAEGIDPDDVTYDILVS--GSGKNGYPIDRLFL 87

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+   G  + + + N ++ A+   G   + + +        + PD  ++  L  AY  + 
Sbjct: 88  EIKSRGVALTLRSYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAAYAMSR 147

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             E   ++   M+  G++P+   +   ++ FS S
Sbjct: 148 KPERGLQVFSNMKAAGVLPDIVTYTTLIQMFSRS 181


>gi|410110107|gb|AFV61133.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           brasiliensis]
          Length = 382

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 141/294 (47%), Gaps = 6/294 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YNA+I        KAK   +
Sbjct: 3   GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFRE 58

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +MK      PN  +Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 59  ARSLISEMK-TAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMI 117

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +     +
Sbjct: 118 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIE 177

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSMI+ YGK     KA  + Q+M +    P+ ITY  II+++G    + RA  +
Sbjct: 178 QNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAML 237

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKL 301
           F +L   G ++       M+ AY   GL   A  LL E      +  D++ + L
Sbjct: 238 FQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHIL 291



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 130/263 (49%), Gaps = 1/263 (0%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +KA+  F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  +Y+ 
Sbjct: 22  SKAISIFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 80

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +    
Sbjct: 81  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + ++N+++  YG A L G+A ++F+ M       + +TY  +I +YG      +A 
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKAN 200

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G +    T + ++  +   G    A +LF+   + GV  D   ++ +  AY
Sbjct: 201 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 260

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            +A +    ++LL  +++   +P
Sbjct: 261 ERAGLVAHAKRLLHELKRPDNIP 283



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 151/343 (44%), Gaps = 15/343 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEM+ +G  P+ + Y+ L+T ++     
Sbjct: 32  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVEN--- 88

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   +AL  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ 
Sbjct: 89  -KKFLEALSVFSEMREI-KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 146

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++  YG   +  E   +   M+    + +++T+N +I  YGK    +K   + + +
Sbjct: 147 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEM 206

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P   T++++I  +GK     +A  +FQK+ +       I ++ +I  Y     V
Sbjct: 207 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLV 266

Query: 243 SRAREIFDELSK---LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           + A+ +  EL +   + +D  +  L          G   EA  +F  + + G   D + +
Sbjct: 267 AHAKRLLHELKRPDNIPRDTAIHILAGA-------GRIEEATYVFRQAIDAGEVKDITVF 319

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           + +    +K      V ++  +M   G  P+       L  + 
Sbjct: 320 ERMIHLLSKYKKYXNVVEVFDKMRGLGYFPDSNVIAVVLNAYG 362



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 119/250 (47%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           ++V Y+ L+    +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  S++
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
           S MK+    P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+ 
Sbjct: 64  SEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
            +  +A+ +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T 
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N+M+  Y       +A+ L +   + G+ P+S TY  +   + K    +    L +++  
Sbjct: 184 NSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 243

Query: 325 NGIVPNKRFF 334
           +G+  ++  F
Sbjct: 244 SGVEIDQILF 253


>gi|242064536|ref|XP_002453557.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
 gi|241933388|gb|EES06533.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
          Length = 390

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 148/332 (44%), Gaps = 29/332 (8%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT-----AHLHTRDK------ 62
           Y+ +I  +GK      A+++ S+M  S C+P+   Y+ ++        LH  ++      
Sbjct: 48  YNTVIEALGKNKMVDKAIFMLSKMIESDCQPNQFTYSIMLDVLATGGQLHRLNEILDICS 107

Query: 63  -----------AKALAK------ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQV 105
                       KAL K      A   F +M      K +   +  +L A   A    + 
Sbjct: 108 GHLNRSVYSYLVKALCKSGHASEAHSVFCRMWSSHE-KGDRDAFVSMLEALCNAEKTAEA 166

Query: 106 NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
             L   + E  +  D+  YN +  A GK   +  M S+  +MK+N   PD+ T+N++I S
Sbjct: 167 IDLLHMMPEKGITTDVGMYNIIFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMISS 226

Query: 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
           +G+    DK  ++F+ +  S  KP + T+NSMI   GK     +A  +F+ M    Y P 
Sbjct: 227 FGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPD 286

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
             TY  +I  +G  + V  A  +FDE+   G    + T N +L+    +G   EA  L+E
Sbjct: 287 VFTYSILIECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNILLDCLERHGKTREAHKLYE 346

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
                G+ PDS TY +L +  +++     ++K
Sbjct: 347 TLKQQGLAPDSITYSILERLESRSQRTARIRK 378



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 148/340 (43%), Gaps = 11/340 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ     D   Y+ LI + GK G+    +    EM + GC  +   YN +I A      K
Sbjct: 2   KQNNCDPDAYTYTILIRMSGKAGKATKFVSFLEEMVSKGCVLNLIAYNTVIEA----LGK 57

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K + KA+    KM   + C+PN  TY+I+L   A    + ++N +  ++    L   +Y
Sbjct: 58  NKMVDKAIFMLSKMIESD-CQPNQFTYSIMLDVLATGGQLHRLNEIL-DICSGHLNRSVY 115

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y  ++ A  K+G   E  SV  RM S+  K D   F  ++++    +   +   +   +
Sbjct: 116 SY--LVKALCKSGHASEAHSVFCRMWSSHEKGDRDAFVSMLEALCNAEKTAEAIDLLHMM 173

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                   +  +N +    GK +       ++ KM A    P   TY  +I+ +G    V
Sbjct: 174 PEKGITTDVGMYNIIFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMISSFGRVGLV 233

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A E+F+E+        V T N+M+     NG   EA +LF++    G  PD  TY +L
Sbjct: 234 DKASELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSIL 293

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN---KRFFLEALE 339
            + + K+N  ++   L   M   G VPN       L+ LE
Sbjct: 294 IECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNILLDCLE 333



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 99/183 (54%), Gaps = 8/183 (4%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  ++    D G+Y+ + + +GK  Q      L+ +M+ +G  PD   YN +I++     
Sbjct: 172 MMPEKGITTDVGMYNIIFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMISSF---- 227

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +   + KA   F++M     CKP+++TYN ++    +  ++D+ + LFK++ E    PD
Sbjct: 228 GRVGLVDKASELFEEMDD-SSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPD 286

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS---YGKRQAFDKMEQ 177
           ++TY+ +++ +GK+  +    S+   M +  C P+I+T+N+L+D    +GK +   K+ +
Sbjct: 287 VFTYSILIECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNILLDCLERHGKTREAHKLYE 346

Query: 178 VFK 180
             K
Sbjct: 347 TLK 349



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 11/166 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I+  G+ G    A  LF EM +S C+PD   YN++I    +   K   L +A
Sbjct: 216 DVFTYNIMISSFGRVGLVDKASELFEEMDDSSCKPDVITYNSMI----NCLGKNGDLDEA 271

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F+ M  KG +   P++ TY+IL+    ++  VD   +LF E+      P+I TYN +
Sbjct: 272 HMLFKDMQEKGYD---PDVFTYSILIECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNIL 328

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL--IDSYGKRQA 171
           +D   ++G  +E   +   +K     PD IT+++L  ++S  +R A
Sbjct: 329 LDCLERHGKTREAHKLYETLKQQGLAPDSITYSILERLESRSQRTA 374



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 80/216 (37%), Gaps = 32/216 (14%)

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           MK N C PD  T+ +LI   GK     K     + ++       L  +N++I   GK ++
Sbjct: 1   MKQNNCDPDAYTYTILIRMSGKAGKATKFVSFLEEMVSKGCVLNLIAYNTVIEALGKNKM 60

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD---------------- 250
             KA ++  KM      P+  TY  ++ +      + R  EI D                
Sbjct: 61  VDKAIFMLSKMIESDCQPNQFTYSIMLDVLATGGQLHRLNEILDICSGHLNRSVYSYLVK 120

Query: 251 ELSKLGKDMKVSTL----------------NAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
            L K G   +  ++                 +MLEA C      EA  L       G+T 
Sbjct: 121 ALCKSGHASEAHSVFCRMWSSHEKGDRDAFVSMLEALCNAEKTAEAIDLLHMMPEKGITT 180

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           D   Y +++ A  K      +  L  +M+ NG+ P+
Sbjct: 181 DVGMYNIIFSALGKLKQVSFMSSLYDKMKANGVAPD 216



 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 11/95 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---HLHT 59
           +++ Y  D   YS LI   GK  +  +A  LF EM   GC P+   YN L+     H  T
Sbjct: 279 QEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNILLDCLERHGKT 338

Query: 60  RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLR 94
           R+ A  L + L    K +G+    P+ +TY+IL R
Sbjct: 339 RE-AHKLYETL----KQQGL---APDSITYSILER 365


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 165/360 (45%), Gaps = 49/360 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL--HTRDKAKALA 67
           D   YS +I  +   G+   A  + ++M +SGC PD + +N LI A    +  ++A  LA
Sbjct: 335 DVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLA 394

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           + L     +KG+    PN+ T+NIL+ A  +  +      LF+E+  S   PD  TYN +
Sbjct: 395 REL----TVKGL---SPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNIL 447

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D    +G + +   +L  M+ + C    +T+N +ID   KR+  ++ E+VF  +  +  
Sbjct: 448 IDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGI 507

Query: 188 KPTLPTFNSMIINYGKA-RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
                TFN++I     A R+   AE V Q M +    P+ +TY  I+T Y    N+S+A 
Sbjct: 508 GRNAITFNTLIDGLCNAERIDDAAELVDQ-MISEGLQPNNVTYNSILTHYCKQGNISKAA 566

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYC----------------MNGL-PT----------- 278
           +I   ++  G ++ V T   ++   C                M G+ PT           
Sbjct: 567 DILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSL 626

Query: 279 -------EADLLFENSHNMGVTPDSSTYKLLYKAYTKAN--MKELVQKLLKRMEQNGIVP 329
                  +A  LF     +G  PD+ TYK++++   +    +KE    L++ M  NG +P
Sbjct: 627 FRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVE-MADNGFIP 685



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 144/326 (44%), Gaps = 7/326 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   +S  +  + + G    A+ +   M   GC PD   Y+ +I    +  +    L +A
Sbjct: 300 DRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGE----LEEA 355

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            G   +M     C P+  T+N L+ A      +++   L +EL    L+P++YT+N +++
Sbjct: 356 KGIVNQMVD-SGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILIN 414

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A  K G       +   MKS+ C PD +T+N+LID+        K   + K +  S    
Sbjct: 415 ALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQ 474

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           +  T+N++I    K R   +AE VF +M       + IT+  +I      + +  A E+ 
Sbjct: 475 STVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELV 534

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNG-LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           D++   G      T N++L  YC  G +   AD+L   + N G   D  TY  L     K
Sbjct: 535 DQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTAN-GFEVDVVTYATLINGLCK 593

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
           A   +   KLL+ M   G+ P  + +
Sbjct: 594 ARRTQAALKLLRGMRMKGMKPTPKAY 619



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 141/323 (43%), Gaps = 9/323 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ L+    ++G    A+ L + M   GC P     N LI  +     K   +  A
Sbjct: 230 DETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYC----KLGRVGDA 285

Query: 70  LGYFQK--MKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           LGY Q+    G E   P+ VT++  +    Q  +VD    +   + +    PD+YTY+ V
Sbjct: 286 LGYIQQEIADGFE---PDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTV 342

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++    NG ++E + ++++M  + C PD  TFN LI +       ++   + + L     
Sbjct: 343 INCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGL 402

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P + TFN +I    K      A  +F++M +   TP  +TY  +I        +++A +
Sbjct: 403 SPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALD 462

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +  E+   G      T N +++  C      EA+ +F+     G+  ++ T+  L     
Sbjct: 463 LLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLC 522

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
            A   +   +L+ +M   G+ PN
Sbjct: 523 NAERIDDAAELVDQMISEGLQPN 545



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 130/324 (40%), Gaps = 8/324 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y ++I  +G  G   L   L  EMR  G      V   L+ + + +  + +    A   
Sbjct: 92  VYEEIIRKLGTAGAFDLMKVLVGEMRREG----HEVGLGLVQSFIGSYARLQLFDDAFDL 147

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
                 M   + N   YN LL   A+   +  + + + E+    + PD+ T+N V+DA  
Sbjct: 148 VSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALC 207

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           +    +    +L  M S    PD  TF  L++ + +  + +   ++   +      PT  
Sbjct: 208 RARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSV 267

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFD 250
           T N +I  Y K    G A    Q+  A  + P  +T+   +   G C N  V  A ++  
Sbjct: 268 TVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVN--GLCQNGHVDHALKVLG 325

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            + + G +  V T + ++   C NG   EA  +     + G  PD++T+  L  A    N
Sbjct: 326 LMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTEN 385

Query: 311 MKELVQKLLKRMEQNGIVPNKRFF 334
             E    L + +   G+ PN   F
Sbjct: 386 QLEEALDLARELTVKGLSPNVYTF 409



 Score = 43.1 bits (100), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 44/250 (17%), Positives = 86/250 (34%), Gaps = 36/250 (14%)

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK-- 174
           L P    Y  ++   G  G    M+ ++  M+    +  +      I SY + Q FD   
Sbjct: 86  LTPSRDVYEEIIRKLGTAGAFDLMKVLVGEMRREGHEVGLGLVQSFIGSYARLQLFDDAF 145

Query: 175 ----------------------------------MEQVFKSLMHSKEKPTLPTFNSMIIN 200
                                             +E  +  +     +P + TFN++I  
Sbjct: 146 DLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDA 205

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
             +AR    A  + ++M++    P   T+  ++  +    ++  A  +   +S++G    
Sbjct: 206 LCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPT 265

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
             T+N ++  YC  G   +A    +     G  PD  T+        +    +   K+L 
Sbjct: 266 SVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLG 325

Query: 321 RMEQNGIVPN 330
            M Q G  P+
Sbjct: 326 LMLQEGCEPD 335


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 160/353 (45%), Gaps = 50/353 (14%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT---RDKAKALAKAL 70
           YS +I  + K G    A  LF+EM   G + D   YN LI    +     D AK L   +
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
                     +  PN+VT+++L+ +  +   + + + L KE+ +  +AP+  TYN ++D 
Sbjct: 326 K--------RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDG 377

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K   ++E   ++  M S  C PDI+TFN+LI+ Y K    D   ++F+ +        
Sbjct: 378 FCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIAN 437

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREI 248
             T+N+++  + ++     A+ +FQ+M + +  P  ++Y+  I + G CDN  + +A EI
Sbjct: 438 TVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYK--ILLDGLCDNGELEKALEI 495

Query: 249 FDEL--SKLGKDMKVSTL---------------------------------NAMLEAYCM 273
           F ++  SK+  D+ +  +                                 N M+   C 
Sbjct: 496 FGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCR 555

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
               ++AD+LF      G  PD  TY +L +A+   +      +L++ M+ +G
Sbjct: 556 KDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSG 608



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 137/302 (45%), Gaps = 7/302 (2%)

Query: 25  GQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CK 83
           G+   A+ L   M  +G +P+   Y  +    L+   K+   A A+   +KM+  ER  K
Sbjct: 207 GKVSDAVVLIDRMVETGFQPNEVTYGPV----LNVMCKSGQTALAMELLRKME--ERNIK 260

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
            + V Y+I++    +  ++D    LF E+       DI TYN ++  +   G   +   +
Sbjct: 261 LDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKL 320

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L  M   +  P+++TF++LIDS+ K     + +Q+ K +M     P   T+NS+I  + K
Sbjct: 321 LRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCK 380

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
                +A  +   M +    P  +T+  +I  Y   + +    E+F E+S  G      T
Sbjct: 381 ENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVT 440

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N +++ +C +G    A  LF+   +  V PD  +YK+L          E   ++  ++E
Sbjct: 441 YNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIE 500

Query: 324 QN 325
           ++
Sbjct: 501 KS 502



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 122/265 (46%), Gaps = 5/265 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR    +T  Y+ LI    K+ +   A+ +   M + GC PD   +N LI  +     KA
Sbjct: 361 QRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYC----KA 416

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             +   L  F++M  +     N VTYN L++   Q+  ++    LF+E+    + PDI +
Sbjct: 417 NRIDDGLELFREMS-LRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVS 475

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++D    NG +++   +  +++ ++ + DI  + ++I         D    +F SL 
Sbjct: 476 YKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLP 535

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
               K     +N MI    +     KA+ +F+KMT   + P  +TY  +I  +   D+ +
Sbjct: 536 LKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDAT 595

Query: 244 RAREIFDELSKLGKDMKVSTLNAML 268
            A E+ +E+   G    VST+  ++
Sbjct: 596 TAAELIEEMKSSGFPADVSTVKMVI 620



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 130/305 (42%), Gaps = 7/305 (2%)

Query: 41  GCRPDPSVYNALITA-HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 99
           G  PD  ++N L+    L  R     +++AL    +M  M   KP ++T N L+      
Sbjct: 153 GYEPDTVIFNTLLNGLCLECR-----VSEALELVDRMVEMGH-KPTLITLNTLVNGLCLN 206

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
             V     L   + E+   P+  TY  V++   K+G       +L +M+    K D + +
Sbjct: 207 GKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKY 266

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
           +++ID   K  + D    +F  +     K  + T+N++I  +  A        + + M  
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIK 326

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
            K +P+ +T+  +I  +     +  A ++  E+ + G      T N++++ +C      E
Sbjct: 327 RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEE 386

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
           A  + +   + G  PD  T+ +L   Y KAN  +   +L + M   G++ N   +   ++
Sbjct: 387 AIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQ 446

Query: 340 TFSSS 344
            F  S
Sbjct: 447 GFCQS 451



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 146/328 (44%), Gaps = 13/328 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  DT I++ L+  +  + +   A+ L   M   G +P     N L+   L    K   +
Sbjct: 154 YEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNG-LCLNGK---V 209

Query: 67  AKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           + A+    +M   G +   PN VTY  +L    ++        L +++ E  +  D   Y
Sbjct: 210 SDAVVLIDRMVETGFQ---PNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKY 266

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           + ++D   K+G +    ++ + M+    K DIIT+N LI  +     +D   ++ + ++ 
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIK 326

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNV 242
            K  P + TF+ +I ++ K     +A+ + ++M      P+ ITY  +I   G+C  + +
Sbjct: 327 RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLID--GFCKENRL 384

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A ++ D +   G D  + T N ++  YC      +   LF      GV  ++ TY  L
Sbjct: 385 EEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTL 444

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
            + + ++   E+ +KL + M    + P+
Sbjct: 445 VQGFCQSGKLEVAKKLFQEMVSRRVRPD 472



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 115/285 (40%), Gaps = 41/285 (14%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P ++ +N L  A A+ +  + V AL K++    +A  IYT + +++ + +   +    S 
Sbjct: 86  PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           + ++     +PD + FN L++         +  ++   ++    KPTL T N+++     
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLV---NG 202

Query: 204 ARLQGK---AEYVFQKMTAMKYTPSFITYECI---------------------------- 232
             L GK   A  +  +M    + P+ +TY  +                            
Sbjct: 203 LCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLD 262

Query: 233 -----ITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
                I + G C +  +  A  +F+E+   G    + T N ++  +C  G   +   L  
Sbjct: 263 AVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLR 322

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +     ++P+  T+ +L  ++ K        +LLK M Q GI PN
Sbjct: 323 DMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPN 367



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 39/192 (20%)

Query: 173 DKMEQVFKSLMHSKEKPTLPTFN----------------------------------SMI 198
           D    +F+ ++ S+  PT+  FN                                  S++
Sbjct: 70  DDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIM 129

Query: 199 IN-YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKL 255
           IN + + R    A     K+  + Y P  + +  ++   G C    VS A E+ D + ++
Sbjct: 130 INCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLN--GLCLECRVSEALELVDRMVEM 187

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
           G    + TLN ++   C+NG  ++A +L +     G  P+  TY  +     K+    L 
Sbjct: 188 GHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALA 247

Query: 316 QKLLKRMEQNGI 327
            +LL++ME+  I
Sbjct: 248 MELLRKMEERNI 259



 Score = 45.1 bits (105), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 32/191 (16%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R  IA+T  Y+ L+    + G+  +A  LF EM +   RPD   Y  L+       +  K
Sbjct: 432 RGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEK 491

Query: 65  ALAKALGYFQKMK-------------GM------------------ERCKPNIVTYNILL 93
           AL +  G  +K K             GM                  +  K +   YNI++
Sbjct: 492 AL-EIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMI 550

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
               +  ++ + + LF+++ E   APD  TYN ++ A+  +        ++  MKS+   
Sbjct: 551 SELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFP 610

Query: 154 PDIITFNLLID 164
            D+ T  ++I+
Sbjct: 611 ADVSTVKMVIN 621



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 5/141 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D GIY  +I  M    +   A  LF  +   G + D   YN +I+  L  +D   +L+KA
Sbjct: 507 DIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMIS-ELCRKD---SLSKA 562

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F+KM   E   P+ +TYNIL+RA     +      L +E+  S    D+ T   V++
Sbjct: 563 DILFRKMTE-EGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVIN 621

Query: 130 AYGKNGMIKEMESVLSRMKSN 150
                 + K    +LS  +++
Sbjct: 622 MLSSGELDKSFLDMLSTTRAS 642


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 156/333 (46%), Gaps = 11/333 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K GQT  A+ L   +     +P+  +YN +I +      K K + +A   +
Sbjct: 180 YGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMC----KVKLVNEAFDLY 235

Query: 74  QKM--KGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
            +M  KG+    P++VTYN L+   C   +  D  +   K + E+I  P++YT+N ++D 
Sbjct: 236 SEMVSKGIS---PDVVTYNALISGFCIVGKMKDATDLFNKMIFENI-NPNVYTFNILVDG 291

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K   +KE ++VL+ M     KPD+ T+N L+D Y   +  +K + +F ++      P 
Sbjct: 292 FCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPN 351

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           + +++ MI  + K +   +A  +F++M      P  +TY  +I        +S A ++ D
Sbjct: 352 IHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVD 411

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+   G      T N++L+A C N    +A  L     + G+ PD  TY  L     K  
Sbjct: 412 EMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNG 471

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
             E  + + + +   G + +   +   ++ F S
Sbjct: 472 RLEDARIVFEDLLVKGYILDVNIYTAMIQGFCS 504



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 155/353 (43%), Gaps = 46/353 (13%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ +I  M K      A  L+SEM + G  PD   YNALI+           +  A   
Sbjct: 214 MYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFC----IVGKMKDATDL 269

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F KM   E   PN+ T+NIL+    + R + +   +   + +  + PD++TYN +MD Y 
Sbjct: 270 FNKMI-FENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYC 328

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
               + + + + + +      P+I +++++I  + K +  D+   +FK +  +   P + 
Sbjct: 329 LVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVV 388

Query: 193 TFNSMI--------INYG---------------------------KARLQGKAEYVFQKM 217
           T+NS+I        I+Y                            K     KA  +  KM
Sbjct: 389 TYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKM 448

Query: 218 TAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
                 P   TY  ++   G C N  +  AR +F++L   G  + V+   AM++ +C +G
Sbjct: 449 KDEGIQPDICTYTTLVD--GLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHG 506

Query: 276 LPTEA-DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           L  E+ DLL +   N G  P++ TY+++  +    +  +  +KLL+ M   G+
Sbjct: 507 LFDESLDLLSKMEEN-GCIPNAVTYEIIICSLFDKDENDKAEKLLREMITRGL 558



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/323 (20%), Positives = 136/323 (42%), Gaps = 17/323 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           + K++  + K       + L  +M  +G   D  + + LI           + +  L   
Sbjct: 75  FGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQLGQNPLSFS-VLAKI 133

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY----TYNGVMD 129
            KM G E   PN++T   L++       + Q  AL  + H+ ++A   +    +Y  +++
Sbjct: 134 LKM-GYE---PNVITLTTLIKGLCLKGQIHQ--AL--QFHDKVVALGFHLNKVSYGTLIN 185

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K G       +L R+     +P+++ +N +IDS  K +  ++   ++  ++     P
Sbjct: 186 GLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISP 245

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRARE 247
            + T+N++I  +        A  +F KM      P+  T+  ++   G+C    +  A+ 
Sbjct: 246 DVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVD--GFCKERRLKEAKN 303

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +   + K G    V T N++++ YC+     +A  +F      GV P+  +Y ++   + 
Sbjct: 304 VLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFC 363

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           K    +    L K M  N I+P+
Sbjct: 364 KIKKVDEAMNLFKEMHCNNIIPD 386



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 9/178 (5%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL--HTRDKAKA 65
           I D   Y+ LI  + K G+   A+ L  EM + G   D   YN+++ A    H  DKA A
Sbjct: 384 IPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIA 443

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L        KMK  E  +P+I TY  L+    +   ++    +F++L       D+  Y 
Sbjct: 444 L------LTKMKD-EGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYT 496

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
            ++  +  +G+  E   +LS+M+ N C P+ +T+ ++I S   +   DK E++ + ++
Sbjct: 497 AMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSLFDKDENDKAEKLLREMI 554



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/276 (18%), Positives = 115/276 (41%), Gaps = 2/276 (0%)

Query: 55  AHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE 114
           +  H  D  K     +  F ++   +  KP+I  +  +L +  ++ +   V +L +++  
Sbjct: 43  SQFHENDDNKH--NLVSSFNRLLHQKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEF 100

Query: 115 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
           + +  D+   + +++ + + G      SVL+++     +P++IT   LI     +    +
Sbjct: 101 NGITSDLVILSILINCFSQLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQ 160

Query: 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
             Q    ++         ++ ++I    K      A  + +++      P+ + Y  II 
Sbjct: 161 ALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIID 220

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
                  V+ A +++ E+   G    V T NA++  +C+ G   +A  LF       + P
Sbjct: 221 SMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINP 280

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +  T+ +L   + K    +  + +L  M + GI P+
Sbjct: 281 NVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPD 316


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 139/306 (45%), Gaps = 1/306 (0%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R Y  +   Y+ LI  +  + +   A  LF  M+  GC PD   Y  LI     T +  
Sbjct: 132 RRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNIN 191

Query: 64  KALAKALGYFQKMKGME-RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            AL         +   E  CKPN++TYNI++    +    D+   LF+E+    + P I 
Sbjct: 192 IALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSII 251

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++  +   G  +E + +L  M     +PD++TFN+LID+  K     + +++   +
Sbjct: 252 SYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVM 311

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           + S   P L T+NS+I  +        A  +F  M +    P  I+Y  +I  Y     V
Sbjct: 312 IESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKV 371

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A ++++E+  +GK   V T +++L+   + G   +A  LF      G+  +S TY + 
Sbjct: 372 EEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIF 431

Query: 303 YKAYTK 308
                K
Sbjct: 432 LDGLCK 437



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 153/321 (47%), Gaps = 13/321 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ ++  + K G+   A  LF EM+  G  P    YN+LI    H    A    ++    
Sbjct: 218 YNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLI----HGFCCAGKWEESKRLL 273

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  +G++   P++VT+N+L+    +   V +   L   + ES + PD+ TYN +++ +
Sbjct: 274 DEMLDQGLQ---PDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGF 330

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
              G +     +   M S  C+PD+I++N+LI+ Y K    ++  +++  ++   ++P +
Sbjct: 331 CMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNV 390

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIF 249
            T++S++     A     A+ +F  M A     +  TY   I + G C N  +  A ++F
Sbjct: 391 ITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYG--IFLDGLCKNDCLFEAMKLF 448

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            EL      +++  LN +++  C  G    A  LFE   N G  P+  TY ++   + + 
Sbjct: 449 TELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCRE 508

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +    L+++ME NG  P+
Sbjct: 509 GQVDKANVLIQKMEANGCTPD 529



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ LI      G    A  LF  M + GC PD   YN LI  +     K   + 
Sbjct: 317 VPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGY----SKTLKVE 372

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A+  + +M  + + +PN++TY+ LL+    A  VD    LF  +    +A + YTY   
Sbjct: 373 EAMKLYNEMLLVGK-RPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIF 431

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D   KN  + E   + + +KS+  K +I   N LID   K    +   ++F+ L +   
Sbjct: 432 LDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGH 491

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
           +P + T+  MI  + +     KA  + QKM A   TP  ITY
Sbjct: 492 EPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITY 533



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 134/321 (41%), Gaps = 40/321 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ LI  + K+G+   A  L   M  SG  PD   YN+LI       D    L  A
Sbjct: 284 DMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGD----LNSA 339

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F  M   + C+P++++YN+L+   ++   V++   L+ E+      P++ TY+ ++ 
Sbjct: 340 RELFVSMPS-KGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLK 398

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
                G + + + + S MK++    +  T+ + +D   K     +  ++F  L  S  K 
Sbjct: 399 GIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKL 458

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +   N +I    KA     A  +F+K++   + P+ +TY                    
Sbjct: 459 EIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTY-------------------- 498

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
                            M+  +C  G   +A++L +     G TPD  TY  L + + ++
Sbjct: 499 ---------------TIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYES 543

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
           N  E V +LL RM Q  + P+
Sbjct: 544 NKLEEVVQLLHRMAQKDVSPD 564



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 144/339 (42%), Gaps = 14/339 (4%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           +D    + L+  +    + R     F+ +   G  P+   YN LI            +++
Sbjct: 102 SDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEH----RISE 157

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI------LAPDIY 122
           A   F +M+ +  C P++VTY  L++      N++    L +E+   I        P++ 
Sbjct: 158 ATRLFLRMQKL-GCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVI 216

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++D   K G   E + +   MK+    P II++N LI  +     +++ +++   +
Sbjct: 217 TYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEM 276

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           +    +P + TFN +I    K     +A+ +   M      P  +TY  +I  +    ++
Sbjct: 277 LDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDL 336

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           + ARE+F  +   G +  V + N ++  Y       EA  L+     +G  P+  TY  L
Sbjct: 337 NSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSL 396

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNK---RFFLEAL 338
            K    A   +  +KL   M+ +GI  N      FL+ L
Sbjct: 397 LKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGL 435



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 129/313 (41%), Gaps = 23/313 (7%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMK--GM--ERCKPN 85
           A+  F  M  S   P  S +N L++       K K  ++    + +M+  G+  +RC   
Sbjct: 53  ALHFFHLMMRSTPTPSLSSFNHLLSG----LAKIKHYSQVFSLYNQMRLSGLSSDRC--- 105

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
             T NILL        + +  A F  +     +P+I TYN ++        I E   +  
Sbjct: 106 --TLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFL 163

Query: 146 RMKSNQCKPDIITFNLLIDSY---GKRQAFDKMEQVFKSLMHSKE---KPTLPTFNSMII 199
           RM+   C PD++T+  LI      G      K+ Q   + +   E   KP + T+N ++ 
Sbjct: 164 RMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVD 223

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGK 257
              K   + +A+ +F++M      PS I+Y  +I  +G+C       ++ + DE+   G 
Sbjct: 224 GLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLI--HGFCCAGKWEESKRLLDEMLDQGL 281

Query: 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
              + T N +++  C  G   EA  L       G+ PD  TY  L + +         ++
Sbjct: 282 QPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARE 341

Query: 318 LLKRMEQNGIVPN 330
           L   M   G  P+
Sbjct: 342 LFVSMPSKGCEPD 354


>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Brachypodium distachyon]
          Length = 814

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 148/323 (45%), Gaps = 11/323 (3%)

Query: 22  GKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGM 79
           G++ Q  + +WL  +M   G   + +  NALI    H   + K +  A    + M  KGM
Sbjct: 455 GRRHQEAVGIWL--KMLEKGLCINIATSNALI----HGLCEGKNMKGATEVLRTMVNKGM 508

Query: 80  ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
           E    + +TYNI+++ C +   +++   L  ++      PD Y +N ++ AY   G ++E
Sbjct: 509 EL---DNITYNIMIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEE 565

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
              +L +MK    +PD++++  +ID Y K +   K  +    LM    KP    +N++I 
Sbjct: 566 ALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNAVIYNALIG 625

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
            YG+      A  V   M ++   P+ +TY  ++    +   V  A+ +F++  K   ++
Sbjct: 626 GYGRNGNISGAIGVLDTMESIGIQPTNVTYCSLMHWMCHAGLVDEAKTMFEQSRKNSIEV 685

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            V     M++  C  G   EA   FE   +  + P+  TY  L  AY K+   E   KL 
Sbjct: 686 GVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRSIPPNKITYTTLMYAYCKSGNNEEASKLF 745

Query: 320 KRMEQNGIVPNKRFFLEALETFS 342
             M  +GIVP+   +   +  FS
Sbjct: 746 DEMVSSGIVPDNVSYNTLVTGFS 768



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/252 (20%), Positives = 110/252 (43%), Gaps = 5/252 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++ +  D  +++ +I      G+   A+ L  +M+  G +PD   Y  +I  +     KA
Sbjct: 540 RKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYC----KA 595

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           K + KA  Y  ++      KPN V YN L+    +  N+     +   +    + P   T
Sbjct: 596 KDIQKANEYLNELMACG-LKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNVT 654

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  +M      G++ E +++  + + N  +  ++ + ++I    K    D+    F+ + 
Sbjct: 655 YCSLMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMR 714

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                P   T+ +++  Y K+    +A  +F +M +    P  ++Y  ++T +   D++ 
Sbjct: 715 SRSIPPNKITYTTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVSYNTLVTGFSQVDSLD 774

Query: 244 RAREIFDELSKL 255
           +A E   E+S +
Sbjct: 775 KAIEKAAEISSI 786



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 74/360 (20%), Positives = 148/360 (41%), Gaps = 53/360 (14%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSV--YNALITAHLHTRDKAKALAKALG 71
           Y+ +I  + K G+      + S++ ++G +       YN L+ A   +    +A+     
Sbjct: 232 YTSMIKALCKVGKVDDGFKILSDLIHAGLQQSAGAVPYNLLMDALCKSGRVDEAI----- 286

Query: 72  YFQKMKG-ME--RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
              ++KG ME  R  P++VT+ IL+    ++    +V AL +E+    + P+    N ++
Sbjct: 287 ---RLKGRMEESRVAPSMVTFGILINGLKRSDRFGEVGALLREMEGLGITPNEVICNELI 343

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D + + G   E   +   M S + K   +T+NL+  +  K    ++ E++ + ++ +   
Sbjct: 344 DWHCRKGHFTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEMERAERILEEMLSTGMT 403

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMT-----AMKYTPSFITY-------------- 229
                FNS++   G  +  G+ E V + ++      MK   + +T               
Sbjct: 404 IHSGLFNSVV--AGLLQRTGRLESVVRLISEMVKRGMKPNDALMTACTKQLCQGRRHQEA 461

Query: 230 -----------ECI------ITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
                       CI        ++G C+  N+  A E+   +   G ++   T N M++ 
Sbjct: 462 VGIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQG 521

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            C +    EA  L ++    G  PD+  +  +  AY      E    LL +M+  G+ P+
Sbjct: 522 CCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPD 581


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 142/317 (44%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI  + K  +   A+ L   M+  GC PD   Y  L+        K   +A A    
Sbjct: 116 YSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLC----KESKVAAAWEVL 171

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M     C PN+VTYN LL    +AR V    AL +++      P++ TY  ++D   K
Sbjct: 172 REMLD-AGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCK 230

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +K+  ++L+ M      PD++ +N+LI+   K    D+   + +  +    KP + T
Sbjct: 231 VGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVT 290

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           ++S+I    ++    +A  +   + +    P  I Y  +I        V  A ++++ ++
Sbjct: 291 YSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMT 350

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G D  V T + +++  C  G   EA LL      MG  P + TY  L K     N  +
Sbjct: 351 GDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLD 410

Query: 314 LVQKLLKRMEQNGIVPN 330
              +L++ ME++   P+
Sbjct: 411 EAIELVEEMERSNCAPS 427



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 148/320 (46%), Gaps = 13/320 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  + K  +   A  LF  M++  C P    YN L+     T      L +A+  F
Sbjct: 13  YNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRT----GKLERAMALF 68

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           Q+M  ++R   +++++NIL+    +A  ++     F+++ +   +P++ TY+ ++D   K
Sbjct: 69  QEM--LDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRC-SPNVITYSVLIDGLCK 125

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              + +   +L  MK+  C PD+IT+ +L+D   K        +V + ++ +   P L T
Sbjct: 126 ANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVT 185

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS++    +AR    A  + + MT    TP+ +TY  +I   G C  V R ++    L+
Sbjct: 186 YNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLID--GLC-KVGRVKDACAMLA 242

Query: 254 KL---GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            +   G    +   N ++   C      E+  L   + + G+ PD  TY  +     ++N
Sbjct: 243 DMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSN 302

Query: 311 MKELVQKLLKRMEQNGIVPN 330
             +   +LL  ++  G  P+
Sbjct: 303 RLDEACRLLLYVKSRGCPPD 322



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 157/363 (43%), Gaps = 46/363 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K R    D   Y+ L+  + K+ +   A  +  EM ++GC P+   YN+L    LH   +
Sbjct: 140 KARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSL----LHGLCR 195

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTY--------------------------------- 89
           A+ ++ AL   + M     C PN+VTY                                 
Sbjct: 196 ARRVSDALALMRDMT-CRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLM 254

Query: 90  --NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
             N+L+    +A  VD+  AL +      + PD+ TY+ V+    ++  + E   +L  +
Sbjct: 255 IYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYV 314

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           KS  C PD+I ++ LID   K    D+   +++ +        + T++++I    KA   
Sbjct: 315 KSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRV 374

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLN 265
            +A  +  +M  M   PS +TY  +I   G CD  ++  A E+ +E+ +        T N
Sbjct: 375 DEAHLLLARMVRMGTPPSTMTYNSLIK--GLCDLNHLDEAIELVEEMERSNCAPSAVTYN 432

Query: 266 AMLEAYC-MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA-NMKELVQKLLKRME 323
            ++   C M  + + A   F+   + GV PD  TY +L +   K+ ++ EL   +L +M 
Sbjct: 433 ILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMV 492

Query: 324 QNG 326
           Q G
Sbjct: 493 QLG 495



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 129/306 (42%), Gaps = 54/306 (17%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG------ 135
           C+PN+VTYN L+    +    D+   LF+ +     +P + TYN ++D   + G      
Sbjct: 6   CEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAM 65

Query: 136 -MIKEM-----ESVLS---------------------RMKSNQCKPDIITFNLLIDSYGK 168
            + +EM       V+S                     R   ++C P++IT+++LID   K
Sbjct: 66  ALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLIDGLCK 125

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
                +  ++ +S+      P + T+  ++    K      A  V ++M      P+ +T
Sbjct: 126 ANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVT 185

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDM-------KVSTLNAMLEAYCMNGLPTEAD 281
           Y  +  ++G C    RAR + D L+ L +DM        V T   +++  C  G   +A 
Sbjct: 186 YNSL--LHGLC----RARRVSDALA-LMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDAC 238

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            +  +  + G TPD   Y +L     KA+  +    LL+R    GI P+       + T+
Sbjct: 239 AMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPD-------VVTY 291

Query: 342 SSSLAG 347
           SS + G
Sbjct: 292 SSVIYG 297



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 95/201 (47%), Gaps = 9/201 (4%)

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           M+ + C+P+++T+N LID   K    D+ +++F+ +   +  P++ T+N+++    +   
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
             +A  +FQ+M   + +   I++  ++T       +  A E F ++        V T + 
Sbjct: 61  LERAMALFQEMLD-RRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSP-NVITYSV 118

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           +++  C     ++A  L E+    G +PD  TY +L     K +      ++L+ M   G
Sbjct: 119 LIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAG 178

Query: 327 IVPNKRFFLEALETFSSSLAG 347
            VPN       L T++S L G
Sbjct: 179 CVPN-------LVTYNSLLHG 192


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 152/330 (46%), Gaps = 11/330 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  Q  +  D   ++ L+  + K G  + A+ +   M   G  PD   YN++I+      
Sbjct: 285 MSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLC--- 341

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K   + +A+    +M   + C PN VTYN L+    +   V++   L + L    + PD
Sbjct: 342 -KLGEVKEAVEVLDQMITRD-CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPD 399

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + T+N ++         +    +   M+S  C+PD  T+N+LIDS   +   D+   + K
Sbjct: 400 VCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLK 459

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +  S    ++ T+N++I  + KA    +AE +F +M     + + +TY  +I   G C 
Sbjct: 460 QMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLID--GLCK 517

Query: 241 N--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTEADLLFENSHNMGVTPDSS 297
           +  V  A ++ D++   G+     T N++L  +C  G +   AD++   + N G  PD  
Sbjct: 518 SRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSN-GCEPDIV 576

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           TY  L     KA   E+  KLL+ ++  GI
Sbjct: 577 TYGTLISGLCKAGRVEVASKLLRSIQMKGI 606



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 146/358 (40%), Gaps = 32/358 (8%)

Query: 6   WYI-ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           W I  D   ++ LI  + +  Q R A+ +  +M + G  PD   +  ++  ++   D   
Sbjct: 183 WGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDG 242

Query: 65  AL-------------------------------AKALGYFQKMKGMERCKPNIVTYNILL 93
           AL                                 AL + Q+M   +   P+  T+N L+
Sbjct: 243 ALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLV 302

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
               +A +V     +   + +    PD+YTYN V+    K G +KE   VL +M +  C 
Sbjct: 303 NGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCS 362

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P+ +T+N LI +  K    ++  ++ + L      P + TFNS+I      R    A  +
Sbjct: 363 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL 422

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F++M +    P   TY  +I        +  A  +  ++   G    V T N +++ +C 
Sbjct: 423 FEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCK 482

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
                EA+ +F+     GV+ +S TY  L     K+   E   +L+ +M   G  P+K
Sbjct: 483 ANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDK 540



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 152/323 (47%), Gaps = 9/323 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           +T  Y+ LI+ + K+ Q   A  L   + + G  PD   +N+LI     TR+   A+   
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAME-- 421

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F++M+  + C+P+  TYN+L+ +      +D+   + K++  S  A  + TYN ++D
Sbjct: 422 --LFEEMRS-KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLID 478

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            + K    +E E +   M+ +    + +T+N LID   K +  +   Q+   ++   +KP
Sbjct: 479 GFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKP 538

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T+NS++ ++ +     KA  + Q MT+    P  +TY  +I+       V  A ++ 
Sbjct: 539 DKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLL 598

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF-ENSHNMGVTPDSSTYKLLYKAYTK 308
             +   G ++     N +++        TEA  LF E        PD+ +Y+++++    
Sbjct: 599 RSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCN 658

Query: 309 AN--MKELVQKLLKRMEQNGIVP 329
               ++E V  L++ +E+ G VP
Sbjct: 659 GGGPIREAVDFLVELLEK-GFVP 680



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 128/331 (38%), Gaps = 44/331 (13%)

Query: 32  WLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI 91
           W+  E    G +PD   YN ++  +L     +  L +       + G+   KP++ T+N+
Sbjct: 143 WMIDEF---GLKPDTHFYNRML--NLLVDGNSLKLVEISHAKMSVWGI---KPDVSTFNV 194

Query: 92  LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151
           L++A  +A  +     + +++    L PD  T+  VM  Y + G +     +  +M    
Sbjct: 195 LIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFG 254

Query: 152 CK------------------------------------PDIITFNLLIDSYGKRQAFDKM 175
           C                                     PD  TFN L++   K       
Sbjct: 255 CSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHA 314

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
            ++   ++     P + T+NS+I    K     +A  V  +M     +P+ +TY  +I+ 
Sbjct: 315 IEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLIST 374

Query: 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
               + V  A E+   L+  G    V T N++++  C+      A  LFE   + G  PD
Sbjct: 375 LCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPD 434

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
             TY +L  +       +    +LK+ME +G
Sbjct: 435 EFTYNMLIDSLCSKGKLDEALNMLKQMELSG 465



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 103/251 (41%), Gaps = 37/251 (14%)

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
            +P+   Y  ++   G++G   +M+ +L  MKS++C+    TF +LI+SY + +  D++ 
Sbjct: 79  FSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEIL 138

Query: 177 QVFKSLM-------------------------------HSKE-----KPTLPTFNSMIIN 200
            V   ++                               H+K      KP + TFN +I  
Sbjct: 139 SVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKA 198

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
             +A     A  + + M +    P   T+  ++  Y    ++  A  I +++ + G    
Sbjct: 199 LCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWS 258

Query: 261 VSTLNAMLEAYCMNGLPTEA-DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
             ++N ++  +C  G   +A + + E S+  G  PD  T+  L     KA   +   +++
Sbjct: 259 NVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIM 318

Query: 320 KRMEQNGIVPN 330
             M Q G  P+
Sbjct: 319 DVMLQEGYDPD 329


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 156/358 (43%), Gaps = 8/358 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           A+   Y+ LI    + G  + A   FS+M   G  PD   +  LI  HL  + K +   +
Sbjct: 147 ANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLID-HLSKKGKVQ---E 202

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A   F+ M       PNIVTYN LL        +D    LF+ + E  +  D+ +YN ++
Sbjct: 203 AYKIFELMIKQGE-APNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLI 261

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + Y  +G  +E  ++  +M+  +  P I T+ +L+ +  +       +++F ++    + 
Sbjct: 262 NGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQS 321

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P+L T+  ++    K     +A  VF+ + ++KY PS   Y  +I           A EI
Sbjct: 322 PSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEI 381

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           FDE+  +G    + T N M+   C  G   EA+ LF      G   D  ++  + + + +
Sbjct: 382 FDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQ 441

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRSLSTAKS 366
            N  +   + LKRM +    PN    L  +  ++   A +QS     +    L   K+
Sbjct: 442 ENQVQKAMEFLKRMREKNFSPNDSVTLMLVNLYA---ADAQSSELPNNFLHELVQKKT 496



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 143/317 (45%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  +I  + K G     + +F EM N G  P+  VY++LI        +   L +A+  F
Sbjct: 82  YGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLC----RVGKLREAVNLF 137

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   +  K N++TYN L+ A  +     +    F ++    + PD+ T+  ++D   K
Sbjct: 138 DEMVS-QGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSK 196

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++E   +   M      P+I+T+N L++        D   ++F+ ++    K  + +
Sbjct: 197 KGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVIS 256

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N++I  Y  +    +A  +F+KM   + TPS  TY  ++        +  A+E+F+ + 
Sbjct: 257 YNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQ 316

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G+   + T   +L+  C NG   EA  +F +  ++   P    Y +L     +A   E
Sbjct: 317 ICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWE 376

Query: 314 LVQKLLKRMEQNGIVPN 330
              ++   +   G+VPN
Sbjct: 377 SAMEIFDEIPTVGLVPN 393



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 118/283 (41%), Gaps = 35/283 (12%)

Query: 83  KPNIVTYNILLRA-CAQARNVDQ----------------------VNALFK--------E 111
           +PN+VT + L++  C + + +D                       +NAL K        E
Sbjct: 6   QPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVE 65

Query: 112 LHESILAP----DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
           LH  +L+     + +TY  V+D+  K+G+  +   +   M +    P++I ++ LI+   
Sbjct: 66  LHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLC 125

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
           +     +   +F  ++    K  + T+NS+I    +  L  +A   F +M      P  +
Sbjct: 126 RVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVV 185

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           T+  +I        V  A +IF+ + K G+   + T N++L   C++     A  LFE  
Sbjct: 186 TFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVM 245

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              G+  D  +Y  L   Y  +   E    L ++M+   + P+
Sbjct: 246 VERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPS 288


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 143/328 (43%), Gaps = 9/328 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ LI    K G   LA  LF +M   G  P+P  Y+ L+        + +        
Sbjct: 195 IYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREG------- 247

Query: 73  FQKMKGMERCK--PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           FQ  + M+R    PN   YN L+        VD+   +F E+ E  +A  + TYN ++  
Sbjct: 248 FQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGG 307

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             +     E   ++ ++      P+I+T+N+LI+ +      D   ++F  L  S   PT
Sbjct: 308 LCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPT 367

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           L T+N++I  Y K      A  + ++M      PS +TY  +I  +   +   +A E+  
Sbjct: 368 LVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHS 427

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            + K G    V T + ++   C++G   EA  LF++   M + P+S  Y  +   Y K  
Sbjct: 428 LMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEG 487

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEAL 338
                 +LL  M  +G+VPN   F   +
Sbjct: 488 SSYRALRLLNEMVHSGMVPNVASFCSTI 515



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 135/305 (44%), Gaps = 9/305 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+   + +   Y+ LI+     G    A  +F+EMR  G       YN LI        +
Sbjct: 255 KRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGG----LCR 310

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   +A+    K+  +    PNIVTYNIL+        +D    LF +L  S L+P + 
Sbjct: 311 GKKFGEAVKLVHKVNKVGL-SPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLV 369

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++  Y K   +     ++  M+     P  +T+ +LID++ +    +K  ++   +
Sbjct: 370 TYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLM 429

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
             S   P + T++ +I          +A  +F+ +  M   P+ + Y  +I  +GYC   
Sbjct: 430 EKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMI--HGYCKEG 487

Query: 243 S--RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           S  RA  + +E+   G    V++  + +   C +    EA+LL     N G+ P  S YK
Sbjct: 488 SSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYK 547

Query: 301 LLYKA 305
           +++K 
Sbjct: 548 MVHKV 552



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 140/310 (45%), Gaps = 24/310 (7%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQK----MKGMER--CK 83
           A W+F+E++ S    D   +  +I          K   +A GYF K    +  +E     
Sbjct: 143 AWWIFNELK-SKVVLDAYSFGIMI----------KGCCEA-GYFVKGFRLLAMLEEFGLS 190

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           PN+V Y  L+  C +  NV     LF ++    L P+ +TY+ +M+ + K G+ +E   +
Sbjct: 191 PNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQM 250

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
              MK +   P+   +N LI  Y      DK  +VF  +        + T+N +I    +
Sbjct: 251 YENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCR 310

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKV 261
            +  G+A  +  K+  +  +P+ +TY  +I   G+CD   +  A  +F++L   G    +
Sbjct: 311 GKKFGEAVKLVHKVNKVGLSPNIVTYNILIN--GFCDVGKMDTAVRLFNQLKSSGLSPTL 368

Query: 262 STLNAMLEAYC-MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
            T N ++  Y  +  L    DL+ E      + P   TY +L  A+ + N  E   ++  
Sbjct: 369 VTYNTLIAGYSKVENLAGALDLVKEMEERC-IAPSKVTYTILIDAFARLNYTEKACEMHS 427

Query: 321 RMEQNGIVPN 330
            ME++G+VP+
Sbjct: 428 LMEKSGLVPD 437



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 144/334 (43%), Gaps = 10/334 (2%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T +Y  ++        T  A+     M + G  P  + +N L+   +    ++    KA 
Sbjct: 89  TPLYDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLI----RSNYFDKAW 144

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
             F ++K   +   +  ++ I+++ C +A    +   L   L E  L+P++  Y  ++D 
Sbjct: 145 WIFNELK--SKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDG 202

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             K G +   +++  +M      P+  T+++L++ + K+    +  Q+++++  S   P 
Sbjct: 203 CCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPN 262

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREI 248
              +N +I  Y    +  KA  VF +M         +TY  +I   G C       A ++
Sbjct: 263 AYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIG--GLCRGKKFGEAVKL 320

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             +++K+G    + T N ++  +C  G    A  LF    + G++P   TY  L   Y+K
Sbjct: 321 VHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSK 380

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
                    L+K ME+  I P+K  +   ++ F+
Sbjct: 381 VENLAGALDLVKEMEERCIAPSKVTYTILIDAFA 414


>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
 gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
          Length = 413

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 140/299 (46%), Gaps = 11/299 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           ++ D   YS L+  +GK G+   A+ +FS M+ +GC PD  VYN LI+       K   +
Sbjct: 113 FVLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISC----LGKQGKV 168

Query: 67  AKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            +AL   + M  KG+    P+  TYNI++   +     ++  + F  +     +PD+ TY
Sbjct: 169 DEALELLEDMNRKGI---MPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTY 225

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF-DKMEQVFKSLM 183
           N +++   K     E   +   M++N+C PD+ TF  LID+  K     D +EQ  + L+
Sbjct: 226 NTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSAR-LV 284

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                P    +N++I  + ++    K   +FQ M      P  ITY  ++  +    + S
Sbjct: 285 KMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTS 344

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            A E+  E+ + G    ++T N ++ +  M G   +A  LF+     G  PD  TY  L
Sbjct: 345 MAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSAL 403



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 150/361 (41%), Gaps = 33/361 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI-------------------T 54
           +  L+  + K  +   A+ +F EM  +G + D +V N LI                   T
Sbjct: 50  FDTLVIFLCKMSRATDALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMT 109

Query: 55  AHLHTRD------------KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
           AH    D            KA   AKAL  F  M+    C P+ V YN+L+    +   V
Sbjct: 110 AHAFVLDVFTYSYLMDALGKAGRAAKALEVFSNMQK-AGCMPDTVVYNVLISCLGKQGKV 168

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           D+   L ++++   + PD  TYN V+D     G  ++  S    MK  +  PD++T+N L
Sbjct: 169 DEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTL 228

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           ++   K +  D+   +F  +  +K  P L TF ++I    KA     A     ++  M +
Sbjct: 229 LNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGH 288

Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
            P+   Y  +I+ +     V +  E+F ++ +        T   ++  +   G  + A  
Sbjct: 289 VPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAME 348

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           L +     G TP  +TY +L ++ + A   E    L K M   G  P+ + +  AL   S
Sbjct: 349 LLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTY-SALPNLS 407

Query: 343 S 343
           +
Sbjct: 408 T 408



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 141/361 (39%), Gaps = 80/361 (22%)

Query: 42  CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL-LRACAQAR 100
           C PD   YN LI  +     KA    +AL  F+++K    CKPN V+++ L +  C  +R
Sbjct: 7   CAPDVVAYNTLIAGYC----KAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSR 62

Query: 101 NVDQVNALFKEL-------------------------------------HESILAPDIYT 123
             D + A+F+E+                                     H  +L  D++T
Sbjct: 63  ATDAL-AVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVL--DVFT 119

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV----- 178
           Y+ +MDA GK G   +   V S M+   C PD + +N+LI   GK+   D+  ++     
Sbjct: 120 YSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMN 179

Query: 179 ------------------------------FKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
                                         F  +   K  P + T+N+++    K R   
Sbjct: 180 RKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTD 239

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           +A  +F +M A K  P   T+  +I        +  A E    L K+G        NA++
Sbjct: 240 EACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALI 299

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             +C +G   +   LF++       PDS TY +L   +++     +  +LL+ M + G  
Sbjct: 300 SGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHT 359

Query: 329 P 329
           P
Sbjct: 360 P 360



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 5/197 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M K+R +  D   Y+ L+  + K  +T  A  LF EM+ + C PD + +  LI     T 
Sbjct: 212 MMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLI----DTL 267

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            KA  +  AL    ++  M    PN   YN L+    ++  VD+   LF+++ E    PD
Sbjct: 268 AKAGRMEDALEQSARLVKMGH-VPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPD 326

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TY  ++  + + G       +L  M      P + T+N+LI S       +    +FK
Sbjct: 327 SITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFK 386

Query: 181 SLMHSKEKPTLPTFNSM 197
            ++     P + T++++
Sbjct: 387 EMIAKGFNPDMQTYSAL 403


>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Brachypodium distachyon]
          Length = 810

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 144/313 (46%), Gaps = 6/313 (1%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ LF EM +SG  PD   YN LI  H H   +A  L +AL  F +MK     KP+I TY
Sbjct: 386 AVCLFEEMADSGL-PDVFTYNNLI--HWHC--QAHKLREALNLFDRMKK-AGVKPSINTY 439

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           N LL    +   +D+   L+ E+      P++ TY  +M  Y          ++L  MK 
Sbjct: 440 NSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQ 499

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
           N    +  T+N+LI+         +++ + KS M     PT+ T+NS+I  + KA + G 
Sbjct: 500 NGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGS 559

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  V+Q+M      P+ ITY   I  Y        A ++ +++ + G    +   NA++ 
Sbjct: 560 AFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALIN 619

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
            +C  G  + A  L       G+ P++  Y  L   Y   NM + V K  + M + GIV 
Sbjct: 620 GFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVA 679

Query: 330 NKRFFLEALETFS 342
           +   +   ++ FS
Sbjct: 680 DTSTYTTLIDGFS 692



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 160/369 (43%), Gaps = 24/369 (6%)

Query: 1   MQKQRW--------YIADTGI-----YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPS 47
           +  +RW         +AD+G+     Y+ LI    +  + R A+ LF  M+ +G +P  +
Sbjct: 378 LNDRRWKDAVCLFEEMADSGLPDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSIN 437

Query: 48  VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNA 107
            YN+L+  +     K   + +A+  + +M  ME  KPN+VTY  L+R     ++ D   A
Sbjct: 438 TYNSLLMGYC----KKGCMDEAVKLYSEMP-MEGFKPNVVTYITLMRGYIAKKDFDNAYA 492

Query: 108 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
           L  E+ ++ ++ + YTYN +++       + E++ +L    S    P ++T+N +I+ + 
Sbjct: 493 LLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFV 552

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
           K         V++ +      P + T+ S I  Y +      A  +   +      P  +
Sbjct: 553 KAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIV 612

Query: 228 TYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
            Y  +I   G+C   N+S A ++   L K G        N+++  Y    +  E    +E
Sbjct: 613 AYNALIN--GFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYE 670

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 345
           +    G+  D+STY  L   ++K        +L   M   G +P+  F   AL T     
Sbjct: 671 SMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDA-FTFTAL-THGLCR 728

Query: 346 AGSQSGSAK 354
           +G   G+ K
Sbjct: 729 SGDIDGAKK 737



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 121/301 (40%), Gaps = 5/301 (1%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A  L  EM+ +G   +   YN LI   +   D+   +   L  F      E   P ++TY
Sbjct: 490 AYALLDEMKQNGVSCNDYTYNVLING-ICMVDRVCEVDGMLKSFMS----EGFIPTMMTY 544

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           N ++    +A  +     +++++ E  L P+I TY   +D Y + G       +L+ ++ 
Sbjct: 545 NSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRR 604

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
              +PDI+ +N LI+ + +        Q+   L+     P    +NS+I  Y    +  +
Sbjct: 605 RGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKE 664

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
               ++ M          TY  +I  +    NV+ A E++ E+   G      T  A+  
Sbjct: 665 VSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTH 724

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             C +G    A  L E    + V P+   Y +L   Y +    +   +L   M   GI P
Sbjct: 725 GLCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQP 784

Query: 330 N 330
           +
Sbjct: 785 D 785



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 137/360 (38%), Gaps = 39/360 (10%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R  + D    + L+    +    + A+ LF EMR  G R D  +++AL++A L    K  
Sbjct: 151 RGVVPDIKSRTDLLIRTARGSSAKDALALFMEMRGRGYRVDAWMFDALMSACL----KEG 206

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
               A+  F +M G E   P+   Y + + A  +  +  +   + +E+ E       +TY
Sbjct: 207 MHEDAVRLFDEMPGAE-IDPDQRVYALAITALCKLGDGGRALRMLREMKEVGFDTCDFTY 265

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
             ++D   K G ++E   V   M+    K D+I    L+  Y  RQ       +FK  + 
Sbjct: 266 RTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKETLK 325

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS------------------- 225
               PT   +  +I    +  +  KA  + ++MT     PS                   
Sbjct: 326 DGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKD 385

Query: 226 ---------------FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
                            TY  +I  +     +  A  +FD + K G    ++T N++L  
Sbjct: 386 AVCLFEEMADSGLPDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMG 445

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           YC  G   EA  L+      G  P+  TY  L + Y      +    LL  M+QNG+  N
Sbjct: 446 YCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCN 505



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 118/268 (44%), Gaps = 13/268 (4%)

Query: 39  NSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRAC 96
           + G  P    YN++I   +    KA  +  A   +Q+M  KG+    PNI+TY   +   
Sbjct: 534 SEGFIPTMMTYNSIINGFV----KAGMMGSAFTVYQQMREKGL---PPNIITYTSFIDGY 586

Query: 97  AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
            +    D    +  ++    L PDI  YN +++ + + G +     +L  +  +   P+ 
Sbjct: 587 CRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNT 646

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           + +N LI  Y       ++ + ++S++         T+ ++I  + K      A  ++ +
Sbjct: 647 VVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSE 706

Query: 217 MTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           M A  Y P   T+  +   +G C   ++  A+++ +E+ +L     V   N ++  Y  +
Sbjct: 707 MMAKGYIPDAFTFTALT--HGLCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGYLRD 764

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLL 302
               EA  L +   NMG+ PD +TY +L
Sbjct: 765 CKLQEAFRLHDEMLNMGIQPDDTTYDIL 792



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+  I    + G + +A+ + +++R  G +PD   YNALI       + + AL   +   
Sbjct: 579 YTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILL 638

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +     +   PN V YN L+        + +V+  ++ + +  +  D  TY  ++D + K
Sbjct: 639 K-----DGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSK 693

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G +     + S M +    PD  TF  L     +    D  +++ + +     +P +  
Sbjct: 694 DGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLDVRPNVFI 753

Query: 194 FNSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
           +N +I  Y +  +LQ +A  +  +M  M   P   TY+ +++
Sbjct: 754 YNMLINGYLRDCKLQ-EAFRLHDEMLNMGIQPDDTTYDILVS 794



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 90/200 (45%), Gaps = 13/200 (6%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   Y+ LI    ++G    A+ L   +   G  P+  VYN+LIT +    + 
Sbjct: 603 RRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGY-KNLNM 661

Query: 63  AKALAKALGYFQKMKGMERCKPNIV----TYNILLRACAQARNVDQVNALFKELHESILA 118
            K ++K   +++ M      K  IV    TY  L+   ++  NV     L+ E+      
Sbjct: 662 MKEVSK---FYESM-----IKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYI 713

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD +T+  +     ++G I   + +L  M+    +P++  +N+LI+ Y +     +  ++
Sbjct: 714 PDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGYLRDCKLQEAFRL 773

Query: 179 FKSLMHSKEKPTLPTFNSMI 198
              +++   +P   T++ ++
Sbjct: 774 HDEMLNMGIQPDDTTYDILV 793


>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 917

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 158/332 (47%), Gaps = 6/332 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +S LI+  G+ G    A+ +F+ M+  G RP+   YNA+I A      + K +AK   +F
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAK---FF 327

Query: 74  QKMKGMERC-KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            +M+    C +P+ +T+N LL  C++    +    LF E+    +  D+++YN ++DA  
Sbjct: 328 DEMQ--RNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAIC 385

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G +     +L++M + +  P++++++ +ID + K   FD+   +F  + +        
Sbjct: 386 KGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRV 445

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           ++N+++  Y K     +A  + ++M ++      +TY  ++  YG        +++F E+
Sbjct: 446 SYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEM 505

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            +      + T + +++ Y   GL  EA  +F    + G+  D   Y  L  A  K  + 
Sbjct: 506 KREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLV 565

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
                L+  M + GI PN   +   ++ F  S
Sbjct: 566 GSAVSLIDEMTKEGISPNVVTYNSIIDAFGRS 597



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 145/334 (43%), Gaps = 26/334 (7%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+  + K GQ  LA  + ++M      P+   Y+ +I        KA    +A
Sbjct: 373 DVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFA----KAGRFDEA 428

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  F +M+ +     + V+YN LL    +    ++   + +E+    +  D+ TYN ++ 
Sbjct: 429 LNLFGEMRYLN-IALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLG 487

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK G   E++ V + MK     P+++T++ LID Y K   + +  +VF+    +  + 
Sbjct: 488 GYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRA 547

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE-- 247
            +  ++++I    K  L G A  +  +MT    +P+ +TY  II  +G    + R+ +  
Sbjct: 548 DVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMERSADYS 607

Query: 248 ----------IFDELSKLGKDMKV-------STLNAMLEAYCMNGLPTEADLL--FENSH 288
                        EL++   +  +       S  N  +   C  G+   + +L  F   H
Sbjct: 608 NGGSLPFSSSALSELTETEGNRVIQLFGQLTSEGNNRMTKDCKEGMQELSCILEVFRKMH 667

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
            + + P+  T+  +  A ++ N  E    LL+ +
Sbjct: 668 QLEIKPNVVTFSAILNACSRCNSFEDASMLLEEL 701



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 113/267 (42%), Gaps = 43/267 (16%)

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-RQAFDKMEQVF 179
           +Y ++ ++ AYG++G+ +E  SV + MK    +P+++T+N +ID+ GK    F ++ + F
Sbjct: 268 VYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFF 327

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT--------------------- 218
             +  +  +P   TFNS++    +  L   A  +F +M+                     
Sbjct: 328 DEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKG 387

Query: 219 --------------AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
                         A +  P+ ++Y  +I  +        A  +F E+  L   +   + 
Sbjct: 388 GQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSY 447

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N +L  Y   G   EA  +     ++G+  D  TY  L   Y K    + V+K+   M++
Sbjct: 448 NTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKR 507

Query: 325 NGIVPNKRFFLEALETFSSSLAGSQSG 351
             ++PN       L T+S+ + G   G
Sbjct: 508 EHVLPN-------LLTYSTLIDGYSKG 527


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 161/358 (44%), Gaps = 48/358 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K GQT  A+ L   +     +P+  +YN +I +      K K + +A   +
Sbjct: 164 YGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMC----KVKLVNEAFDLY 219

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  KG+    P++VTY+ L+        ++    LF ++    + PD+YT++ ++D +
Sbjct: 220 SEMVSKGIS---PDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGF 276

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G +KE ++VL+ M     KPD++T+  L+D Y   +  +K + +F ++        +
Sbjct: 277 CKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANV 336

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIF 249
            ++N MI  + K +   +A  +F++M      P  +TY  +I   G C +  +S A ++ 
Sbjct: 337 QSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLID--GLCKSGKISYALKLV 394

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE+   G      T N++L+A C N    +A  L     + G+ PD  TY +L     K 
Sbjct: 395 DEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKG 454

Query: 310 N--------MKELVQK---------------------------LLKRMEQNGIVPNKR 332
                     ++L+ K                           LL +ME NG +PN +
Sbjct: 455 GRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAK 512



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 153/353 (43%), Gaps = 32/353 (9%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---------HLHT 59
           +D   ++ LI    + G T  +  +F+ +   G  P+      LI            LH 
Sbjct: 89  SDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHF 148

Query: 60  RDKAKAL----------------------AKALGYFQKMKGMERCKPNIVTYNILLRACA 97
            DK  AL                      + AL   +++ G +  +PN+V YN ++ +  
Sbjct: 149 HDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDG-KLVQPNVVMYNTIIDSMC 207

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           + + V++   L+ E+    ++PD+ TY+ ++  +   G + +   + ++M S +  PD+ 
Sbjct: 208 KVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVY 267

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           TF++L+D + K     + + V   +M    KP + T+ S++  Y   +   KA+ +F  M
Sbjct: 268 TFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTM 327

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
                T +  +Y  +I  +     V  A  +F E+        V T N++++  C +G  
Sbjct: 328 AQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKI 387

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + A  L +  H+ GV  D  TY  +  A  K +  +    LL +M+  GI P+
Sbjct: 388 SYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPD 440



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 156/355 (43%), Gaps = 48/355 (13%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ +I  M K      A  L+SEM + G  PD   Y+ALI+           L  A+G 
Sbjct: 198 MYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFC----ILGKLNDAIGL 253

Query: 73  FQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           F KM   E   P++ T++IL+   C + R  +  N L   + + I  PD+ TY  +MD Y
Sbjct: 254 FNKMIS-EEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGI-KPDVVTYCSLMDGY 311

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PT 190
                + + +S+ + M       ++ ++N++I+ + K +  D+   +FK  MH K   P 
Sbjct: 312 CLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKE-MHCKNIIPD 370

Query: 191 LPTFNSMI--------INYG---------------------------KARLQGKAEYVFQ 215
           + T+NS+I        I+Y                            K     KA  +  
Sbjct: 371 VVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLT 430

Query: 216 KMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           KM      P   TY  +I   G C    +  A+ IF++L   G ++ V T   M++ +C 
Sbjct: 431 KMKDEGIQPDMYTYTILID--GLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCD 488

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           N L  +A  L     + G  P++ TY+++  +  + +  ++ +KLL+ M   G++
Sbjct: 489 NDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARGLL 543



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 111/251 (44%), Gaps = 17/251 (6%)

Query: 26  QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK-- 83
           Q   A  +F+ M   G   +   YN +I        K K + +A+  F++M     CK  
Sbjct: 316 QVNKAKSIFNTMAQGGVTANVQSYNIMINGFC----KIKKVDEAMNLFKEM----HCKNI 367

Query: 84  -PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
            P++VTYN L+    ++  +     L  E+H+  +  D  TYN ++DA  KN  + +  +
Sbjct: 368 IPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIA 427

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +L++MK    +PD+ T+ +LID   K       + +F+ L+      T+ T+  MI  + 
Sbjct: 428 LLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFC 487

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
              L  KA  +  KM      P+  TYE II      D    A ++  E+   G      
Sbjct: 488 DNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARG------ 541

Query: 263 TLNAMLEAYCM 273
            L    +AYC+
Sbjct: 542 LLFGWKKAYCL 552



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 9/178 (5%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL--HTRDKAKA 65
           I D   Y+ LI  + K G+   A+ L  EM + G   D   YN+++ A    H  DKA A
Sbjct: 368 IPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIA 427

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L        KMK  E  +P++ TY IL+    +   +     +F++L        +YTY 
Sbjct: 428 L------LTKMKD-EGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYT 480

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
            ++  +  N +  +  ++LS+M+ N C P+  T+ ++I S  ++   D  E++ + ++
Sbjct: 481 VMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMI 538



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/248 (18%), Positives = 95/248 (38%), Gaps = 35/248 (14%)

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
            P I+ +  ++ +  K    +   S+   M+ N    D++TFN+LI+ + +         
Sbjct: 53  TPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFS 112

Query: 178 VFKSLMHSKEKPTLPTFNSMI----------------------------INYG------- 202
           VF +++    +P   T  ++I                            + YG       
Sbjct: 113 VFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLC 172

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           K      A  + +++      P+ + Y  II        V+ A +++ E+   G    V 
Sbjct: 173 KVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVV 232

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T +A++  +C+ G   +A  LF    +  + PD  T+ +L   + K    +  + +L  M
Sbjct: 233 TYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMM 292

Query: 323 EQNGIVPN 330
            + GI P+
Sbjct: 293 MKQGIKPD 300


>gi|297808179|ref|XP_002871973.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317810|gb|EFH48232.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 831

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 164/333 (49%), Gaps = 7/333 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + ++      + L S+++ +G RPD  ++NA+I A      ++  L +A+  F
Sbjct: 357 YTTLVTALTRQKHFHSLLSLISKVQKNGLRPDTILFNAIINAS----SESGNLDQAMKIF 412

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE-LHESILAPDIYTYNGVMDAYG 132
           +KMK    CKP   T+N L++   +   +++ + L +  L + +L P+  T N ++ A+ 
Sbjct: 413 EKMK-ESGCKPTASTFNTLIKGYGKIGKLEESSRLLEMMLRDEMLQPNDRTCNILVQAWC 471

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ-VFKSLMHSKEKPTL 191
               I+E  +++ +M+S   KPD +TFN L  +Y +  +    E  +   ++H+K KP +
Sbjct: 472 NQRKIEEAWNIVYKMQSFGVKPDAVTFNTLARAYSRIGSTCTAEDMIIPRMLHNKVKPNV 531

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T  +++  Y +     +A   F +M  +   P+   +  +I  +   +++    E+ D 
Sbjct: 532 RTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDL 591

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G    V T + ++ A+   G     + ++ +    G+ PD   + +L K Y +A  
Sbjct: 592 MEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYRDMLEGGIDPDIHAFSILAKGYARAGE 651

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            E  +++L +M + G+ PN   + + +  + S+
Sbjct: 652 PEKAEQILNQMRKFGVRPNVVIYTQIISGWCSA 684



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 143/326 (43%), Gaps = 12/326 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT +++ +I    + G    AM +F +M+ SGC+P  S +N LI  +     K   L ++
Sbjct: 388 DTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGY----GKIGKLEES 443

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               + M   E  +PN  T NIL++A    R +++   +  ++    + PD  T+N +  
Sbjct: 444 SRLLEMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSFGVKPDAVTFNTLAR 503

Query: 130 AYGKNGMIKEMES-VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE- 187
           AY + G     E  ++ RM  N+ KP++ T   +++ Y +     KME+  +     KE 
Sbjct: 504 AYSRIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEE---GKMEEALRFFYRMKEL 560

Query: 188 --KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P L  FNS+I  +           V   M      P  +T+  ++  +    ++ R 
Sbjct: 561 GVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRC 620

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            EI+ ++ + G D  +   + + + Y   G P +A+ +       GV P+   Y  +   
Sbjct: 621 EEIYRDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISG 680

Query: 306 YTKAN-MKELVQKLLKRMEQNGIVPN 330
           +  A  MK+ +Q   K     G+ PN
Sbjct: 681 WCSAGEMKKAMQVYNKMRGSVGLSPN 706



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 120/263 (45%), Gaps = 2/263 (0%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           KP+I+TY  L+ A  + ++   + +L  ++ ++ L PD   +N +++A  ++G + +   
Sbjct: 351 KPSIITYTTLVTALTRQKHFHSLLSLISKVQKNGLRPDTILFNAIINASSESGNLDQAMK 410

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINY 201
           +  +MK + CKP   TFN LI  YGK    ++  ++ + ++  +  +P   T N ++  +
Sbjct: 411 IFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLEMMLRDEMLQPNDRTCNILVQAW 470

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE-IFDELSKLGKDMK 260
              R   +A  +  KM +    P  +T+  +   Y    +   A + I   +        
Sbjct: 471 CNQRKIEEAWNIVYKMQSFGVKPDAVTFNTLARAYSRIGSTCTAEDMIIPRMLHNKVKPN 530

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           V T   ++  YC  G   EA   F     +GV P+   +  L K +   N  + V +++ 
Sbjct: 531 VRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVD 590

Query: 321 RMEQNGIVPNKRFFLEALETFSS 343
            ME+ G+ P+   F   +  +SS
Sbjct: 591 LMEEFGVKPDVVTFSTLMNAWSS 613



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 6/242 (2%)

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           + +++F  L E    P I TY  ++ A  +      + S++S+++ N  +PD I FN +I
Sbjct: 337 EAHSIFNTLIEEGHKPSIITYTTLVTALTRQKHFHSLLSLISKVQKNGLRPDTILFNAII 396

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKY 222
           ++  +    D+  ++F+ +  S  KPT  TFN++I  YGK  +L+  +  +   +     
Sbjct: 397 NASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLEMMLRDEML 456

Query: 223 TPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTE 279
            P+  T  C I +  +C+   +  A  I  ++   G      T N +  AY   G   T 
Sbjct: 457 QPNDRT--CNILVQAWCNQRKIEEAWNIVYKMQSFGVKPDAVTFNTLARAYSRIGSTCTA 514

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
            D++     +  V P+  T   +   Y +    E   +   RM++ G+ PN   F   ++
Sbjct: 515 EDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIK 574

Query: 340 TF 341
            F
Sbjct: 575 GF 576



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/272 (17%), Positives = 125/272 (45%), Gaps = 5/272 (1%)

Query: 36  EMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95
           +M++ G +PD   +N L  A  ++R  +   A+ +   + +    + KPN+ T   ++  
Sbjct: 485 KMQSFGVKPDAVTFNTL--ARAYSRIGSTCTAEDMIIPRMLH--NKVKPNVRTCGTIVNG 540

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
             +   +++    F  + E  + P+++ +N ++  +     +  +  V+  M+    KPD
Sbjct: 541 YCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPD 600

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
           ++TF+ L++++       + E++++ ++     P +  F+ +   Y +A    KAE +  
Sbjct: 601 VVTFSTLMNAWSSVGDMKRCEEIYRDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILN 660

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL-SKLGKDMKVSTLNAMLEAYCMN 274
           +M      P+ + Y  II+ +     + +A ++++++   +G    ++T   ++  +   
Sbjct: 661 QMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYNKMRGSVGLSPNLTTYETLIWGFGEA 720

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
             P +A+ L +      V P   T +L+   +
Sbjct: 721 KQPWKAEELLKEMEEKNVVPTRKTMQLIADGW 752



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 98/217 (45%), Gaps = 6/217 (2%)

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D+ +   +M+   + G  +E  S+ + +     KP IIT+  L+ +  +++ F  +  + 
Sbjct: 318 DVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSIITYTTLVTALTRQKHFHSLLSLI 377

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             +  +  +P    FN++I    ++    +A  +F+KM      P+  T+  +I  YG  
Sbjct: 378 SKVQKNGLRPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKI 437

Query: 240 DNVSRAREIFDELSKLGKDM---KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
             +  +  + + +  L  +M      T N +++A+C      EA  +     + GV PD+
Sbjct: 438 GKLEESSRLLEMM--LRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSFGVKPDA 495

Query: 297 STYKLLYKAYTKANMKELVQK-LLKRMEQNGIVPNKR 332
            T+  L +AY++       +  ++ RM  N + PN R
Sbjct: 496 VTFNTLARAYSRIGSTCTAEDMIIPRMLHNKVKPNVR 532



 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   +S L     + G+   A  + ++MR  G RP+  +Y  +I+        A  + KA
Sbjct: 635 DIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWC----SAGEMKKA 690

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQAR 100
           +  + KM+G     PN+ TY  L+    +A+
Sbjct: 691 MQVYNKMRGSVGLSPNLTTYETLIWGFGEAK 721


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 140/317 (44%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I ++ K G++  A  +  EM +    PD  VY  LI    H   K   +  A  +F
Sbjct: 331 YNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLI----HGFFKLGHVRTANKWF 386

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   ++  P+ +TY  L++   Q   V +   LF E+    L PD  TY  ++D Y K
Sbjct: 387 DEMLS-KKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCK 445

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +    S+ + M      P+I+T+  LID   K    D   ++   +     +  +  
Sbjct: 446 AGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCI 505

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NSM+    KA    +A  + ++M      P  ITY  +I  Y    ++ +A ++  E+ 
Sbjct: 506 YNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEML 565

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V T N ++  +CM G+  + D L       G+ PD+ TY  L K +   N   
Sbjct: 566 DRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMN 625

Query: 314 LVQKLLKRMEQNGIVPN 330
              K+ KRM   G+ P+
Sbjct: 626 TTTKIYKRMRNQGVAPD 642



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 148/323 (45%), Gaps = 11/323 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           +T  Y+ +I  + + G+ + A  L  +M      PD   Y+ +I  + H  +  KAL K 
Sbjct: 257 NTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKAL-KL 315

Query: 70  LGYFQKMKGMERCKPNIVTYN-ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           +   Q +KG+   KPN  TYN I+L  C   ++ +    L +E+    + PD   Y  ++
Sbjct: 316 MDDMQ-IKGL---KPNRYTYNSIILLLCKIGKSFEAEKVL-REMMSQKIIPDNVVYTTLI 370

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
             + K G ++        M S +  PD IT+  LI  +G+     + + +F  ++    K
Sbjct: 371 HGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLK 430

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAR 246
           P   T+ ++I  Y KA     A  +  +M  M  TP+ +TY  +I   G C +  +  A 
Sbjct: 431 PDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALID--GLCKHGELDTAN 488

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+ DE+ K G  + V   N+M+   C  G   +A  L +     G+ PD+ TY  +  AY
Sbjct: 489 ELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAY 548

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            +    +   KLL+ M   G+ P
Sbjct: 549 CRLGDIDKAHKLLQEMLDRGLQP 571



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 143/346 (41%), Gaps = 55/346 (15%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI   G+ G+      LF EM + G +PD   Y  LI  +     KA  +  A
Sbjct: 397 DYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYC----KAGEMVNA 452

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                +M  M    PNIVTY  L+    +   +D  N L  E+ +  L  ++  YN +++
Sbjct: 453 FSLHNEMVQMGM-TPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVN 511

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K G I++   ++  M+     PD IT+  +ID+Y +    DK  ++ + ++    +P
Sbjct: 512 GICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQP 571

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           T+ TFN ++  +    +    + +   M      P  ITY                    
Sbjct: 572 TVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITY-------------------- 611

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
                          N +++ +C+         +++   N GV PDS+TY +L K + KA
Sbjct: 612 ---------------NTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKA 656

Query: 310 -NMKELVQKLLKRMEQNGIVPN--------KRFF-----LEALETF 341
            N+KE    L K M + G VP         KRF+     LEA E F
Sbjct: 657 RNLKE-AWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELF 701



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 113/258 (43%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P++V+Y+ ++        + +   L  ++    L P+ YTYN ++    K G   E E V
Sbjct: 291 PDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKV 350

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L  M S +  PD + +  LI  + K        + F  ++  K  P   T+ ++I  +G+
Sbjct: 351 LREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQ 410

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
                + + +F +M +    P  +TY  +I +Y     +  A  + +E+ ++G    + T
Sbjct: 411 GGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVT 470

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
             A+++  C +G    A+ L +     G+  +   Y  +     KA   E   KL+K ME
Sbjct: 471 YGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEME 530

Query: 324 QNGIVPNKRFFLEALETF 341
             GI P+   +   ++ +
Sbjct: 531 VAGIDPDAITYTTVIDAY 548



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 99/232 (42%)

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
           A N + +    K   E  ++ +  +YN ++ +  + G +KE   +L +M      PD+++
Sbjct: 236 ANNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVS 295

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           ++ +ID Y       K  ++   +     KP   T+NS+I+   K     +AE V ++M 
Sbjct: 296 YSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMM 355

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           + K  P  + Y  +I  +    +V  A + FDE+          T   +++ +   G   
Sbjct: 356 SQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVI 415

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           E   LF    + G+ PD  TY  L   Y KA        L   M Q G+ PN
Sbjct: 416 EPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPN 467



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 9/137 (6%)

Query: 28  RLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 87
           RL  W+  +    G  PD   YN L+  H   R+      K    +++M+  +   P+  
Sbjct: 594 RLLGWMLEK----GIVPDAITYNTLMKQHC-IRNSMNTTTKI---YKRMRN-QGVAPDSN 644

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           TYNIL++   +ARN+ +   L+KE+ E    P + +YN ++  + K   I E   +   M
Sbjct: 645 TYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEM 704

Query: 148 KSNQCKPDIITFNLLID 164
           + +    D   +N  +D
Sbjct: 705 RGHGLVADGEIYNFFVD 721



 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 9/108 (8%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERCKPNIVTYN 90
           ++  MRN G  PD + YN LI  H     KA+ L +A   +++M  KG     P + +YN
Sbjct: 630 IYKRMRNQGVAPDSNTYNILIKGHC----KARNLKEAWFLYKEMIEKGY---VPTVTSYN 682

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIK 138
            L++   + + + +   LF+E+    L  D   YN  +D   + G ++
Sbjct: 683 ALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVE 730


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 154/337 (45%), Gaps = 14/337 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI+ + + G+   A+  F++M  +G +P+  VY++LI       D  KA  K 
Sbjct: 325 DVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKA--KE 382

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVD--QVNALFKELHESILAPDIYTYNG 126
           L Y     G+ R  PNI  +N ++ + C + R +D   +  L K++ E     DI  +N 
Sbjct: 383 LVYEMMNNGIPR--PNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGER---SDIIMFNT 437

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++D Y   G + +  SVL  M S    PD  T+N L++ Y K    D    +F+ +   K
Sbjct: 438 LIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKK 497

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
            KPT  T+N ++    +A     A+ +  +M     T S  TY   I + G C N     
Sbjct: 498 IKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYN--IILKGLCRNNCTDE 555

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  +F +L  +     ++TLN M+ +        EA  LF    + G+ P++STY ++ +
Sbjct: 556 AIVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIR 615

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
              K    E    +   ME++G  P  R   + + T 
Sbjct: 616 NLLKEGSVEEADNMFSSMEKSGCAPCSRLLNDTIRTL 652



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 149/329 (45%), Gaps = 6/329 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K    +A+  +++ LI    K+G    AM + SEM+  G  PD   Y+ LI+A      +
Sbjct: 283 KGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALC----R 338

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDI 121
              LA A+  F +M G    +PN V Y+ L++  C     V     +++ ++  I  P+I
Sbjct: 339 MGRLADAVDKFNQMIG-TGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNI 397

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
             +N ++ +  K G + +   +   +K    + DII FN LID Y       K   V  +
Sbjct: 398 AFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDA 457

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++ +   P   T+N+++  Y K+        +F++M+  K  P+ +TY  I+        
Sbjct: 458 MISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGR 517

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
              A+++  E+   G  + + T N +L+  C N    EA ++F+    M V  + +T   
Sbjct: 518 TVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNT 577

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +  +      +E  + L   +  +G+VPN
Sbjct: 578 MINSMYTVQRREEAKDLFSAISDSGLVPN 606



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 137/312 (43%), Gaps = 5/312 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           L   M   GC PD   Y A++   L   ++++     L    K +G+  C P++VTYN +
Sbjct: 66  LLRRMTELGCVPDAFSY-AIVLKRLCDDNRSQQALDLLRMMAKEEGV--CSPDVVTYNTV 122

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +   + +   L+ E+ +    PD+ T+N +++A  K   +   E +L +M  N  
Sbjct: 123 IHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGV 182

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            P+ +T+  +I  Y     +++  ++F+ +      P + ++NS + +  K     +A  
Sbjct: 183 PPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAE 242

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +F  M A  + P+ +TY  ++  Y      +     F+ +   G          +++AY 
Sbjct: 243 IFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYA 302

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKLLKRMEQNGIVPNK 331
             G+  EA L+       G++PD  TY  L  A  +   + + V K   +M   G+ PN 
Sbjct: 303 KRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDK-FNQMIGTGVQPNT 361

Query: 332 RFFLEALETFSS 343
             +   ++ F +
Sbjct: 362 VVYHSLIQGFCT 373



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 130/306 (42%), Gaps = 10/306 (3%)

Query: 29  LAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88
           L +  F  +  +G + D +  N ++     T+    A+   L    ++     C P+  +
Sbjct: 26  LGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKVLLRRMTELG----CVPDAFS 81

Query: 89  YNILL-RACAQARN---VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           Y I+L R C   R+   +D +  + KE  E + +PD+ TYN V+  + K G I +  ++ 
Sbjct: 82  YAIVLKRLCDDNRSQQALDLLRMMAKE--EGVCSPDVVTYNTVIHGFFKEGKIGKACNLY 139

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             M      PD++T N +I++  K +A D  E + + ++ +   P   T+ SMI  Y   
Sbjct: 140 HEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTL 199

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
               +A  +F++MT     P  +++   +           A EIF  ++  G    + T 
Sbjct: 200 GRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTY 259

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
             +L  Y   G   +    F      G+  +   + +L  AY K  M +    +L  M+ 
Sbjct: 260 GILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQG 319

Query: 325 NGIVPN 330
            G+ P+
Sbjct: 320 QGLSPD 325



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 132/300 (44%), Gaps = 6/300 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I    K+G+   A  L+ EM   G  PD   +N++I A      KA+A+  A
Sbjct: 115 DVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALC----KARAVDNA 170

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               ++M       PN VTY  ++   +     ++   +F+E+    L PDI ++N  MD
Sbjct: 171 ELLLRQMVD-NGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMD 229

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           +  K+G  KE   +   M +   +P+I+T+ +L+  Y     F  M   F ++       
Sbjct: 230 SLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVA 289

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               F  +I  Y K  +  +A  +  +M     +P   TY  +I+       ++ A + F
Sbjct: 290 NCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKF 349

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNG-LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           +++   G        +++++ +C +G L    +L++E  +N    P+ + +  +  +  K
Sbjct: 350 NQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICK 409



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 121/294 (41%), Gaps = 6/294 (2%)

Query: 42  CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN 101
           C PD   YN +I    H   K   + KA   + +M   +   P++VT+N ++ A  +AR 
Sbjct: 112 CSPDVVTYNTVI----HGFFKEGKIGKACNLYHEMM-QQGFVPDVVTHNSIINALCKARA 166

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
           VD    L +++ ++ + P+  TY  ++  Y   G  +E   +   M      PDI+++N 
Sbjct: 167 VDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNS 226

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
            +DS  K     +  ++F S+     +P + T+  ++  Y            F  M    
Sbjct: 227 FMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDG 286

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
              + + +  +I  Y     +  A  I  E+   G    V T + ++ A C  G   +A 
Sbjct: 287 IVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAV 346

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV-PNKRFF 334
             F      GV P++  Y  L + +         ++L+  M  NGI  PN  FF
Sbjct: 347 DKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFF 400



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 111/256 (43%), Gaps = 3/256 (1%)

Query: 90  NILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           N +L+  C   R  D V  L + + E    PD ++Y  V+     +   ++   +L  M 
Sbjct: 47  NTVLKCLCCTKRTDDAVKVLLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMA 106

Query: 149 SNQ--CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
             +  C PD++T+N +I  + K     K   ++  +M     P + T NS+I    KAR 
Sbjct: 107 KEEGVCSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARA 166

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
              AE + ++M      P+ +TY  +I  Y        A ++F E++  G    + + N+
Sbjct: 167 VDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNS 226

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
            +++ C +G   EA  +F +    G  P+  TY +L   Y        +      M+ +G
Sbjct: 227 FMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDG 286

Query: 327 IVPNKRFFLEALETFS 342
           IV N   F   ++ ++
Sbjct: 287 IVANCLVFTILIDAYA 302



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 8/144 (5%)

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS-- 262
           R     + + ++MT +   P   +Y   I +   CD+ +R+++  D L  + K+  V   
Sbjct: 58  RTDDAVKVLLRRMTELGCVPDAFSYA--IVLKRLCDD-NRSQQALDLLRMMAKEEGVCSP 114

Query: 263 ---TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
              T N ++  +   G   +A  L+      G  PD  T+  +  A  KA   +  + LL
Sbjct: 115 DVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLL 174

Query: 320 KRMEQNGIVPNKRFFLEALETFSS 343
           ++M  NG+ PNK  +   +  +S+
Sbjct: 175 RQMVDNGVPPNKVTYTSMIHGYST 198


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 140/317 (44%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I ++ K G++  A  +  EM +    PD  VY  LI    H   K   +  A  +F
Sbjct: 331 YNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLI----HGFFKLGHVRTANKWF 386

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   ++  P+ +TY  L++   Q   V +   LF E+    L PD  TY  ++D Y K
Sbjct: 387 DEMLS-KKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCK 445

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +    S+ + M      P+I+T+  LID   K    D   ++   +     +  +  
Sbjct: 446 AGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCI 505

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NSM+    KA    +A  + ++M      P  ITY  +I  Y    ++ +A ++  E+ 
Sbjct: 506 YNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEML 565

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V T N ++  +CM G+  + D L       G+ PD+ TY  L K +   N   
Sbjct: 566 DRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMN 625

Query: 314 LVQKLLKRMEQNGIVPN 330
              K+ KRM   G+ P+
Sbjct: 626 TTTKIYKRMRNQGVAPD 642



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 148/323 (45%), Gaps = 11/323 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           +T  Y+ +I  + + G+ + A  L  +M      PD   Y+ +I  + H  +  KAL K 
Sbjct: 257 NTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKAL-KL 315

Query: 70  LGYFQKMKGMERCKPNIVTYN-ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           +   Q +KG+   KPN  TYN I+L  C   ++ +    L +E+    + PD   Y  ++
Sbjct: 316 MDDMQ-IKGL---KPNRYTYNSIILLLCKIGKSFEAEKVL-REMMSQKIIPDNVVYTTLI 370

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
             + K G ++        M S +  PD IT+  LI  +G+     + + +F  ++    K
Sbjct: 371 HGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLK 430

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAR 246
           P   T+ ++I  Y KA     A  +  +M  M  TP+ +TY  +I   G C +  +  A 
Sbjct: 431 PDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALID--GLCKHGELDTAN 488

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+ DE+ K G  + V   N+M+   C  G   +A  L +     G+ PD+ TY  +  AY
Sbjct: 489 ELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAY 548

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            +    +   KLL+ M   G+ P
Sbjct: 549 CRLGDIDKAHKLLQEMLDRGLQP 571



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 141/346 (40%), Gaps = 55/346 (15%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI   G+ G+      LF EM + G +PD   Y  LI  +     KA  +  A
Sbjct: 397 DYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYC----KAGEMVNA 452

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                +M  M    PNIVTY  L+    +   +D  N L  E+ +  L  ++  YN +++
Sbjct: 453 FSLHNEMVQMGM-TPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVN 511

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K G I++   ++  M+     PD IT+  +ID+Y +    DK  ++ + ++    +P
Sbjct: 512 GICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQP 571

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           T+ TFN ++  +    +    + +   M      P  ITY                    
Sbjct: 572 TVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITY-------------------- 611

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
                          N +++ +C+         +++   N GV PDS+TY +L K + KA
Sbjct: 612 ---------------NTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKA 656

Query: 310 -NMKELVQKLLKRMEQNGIVPN-------------KRFFLEALETF 341
            N+KE    L K M + G VP              KR F EA E F
Sbjct: 657 RNLKE-AWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELF 701



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 113/258 (43%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P++V+Y+ ++        + +   L  ++    L P+ YTYN ++    K G   E E V
Sbjct: 291 PDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKV 350

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L  M S +  PD + +  LI  + K        + F  ++  K  P   T+ ++I  +G+
Sbjct: 351 LREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQ 410

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
                + + +F +M +    P  +TY  +I +Y     +  A  + +E+ ++G    + T
Sbjct: 411 GGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVT 470

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
             A+++  C +G    A+ L +     G+  +   Y  +     KA   E   KL+K ME
Sbjct: 471 YGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEME 530

Query: 324 QNGIVPNKRFFLEALETF 341
             GI P+   +   ++ +
Sbjct: 531 VAGIDPDAITYTTVIDAY 548



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 99/232 (42%)

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
           A N + +    K   E  ++ +  +YN ++ +  + G +KE   +L +M      PD+++
Sbjct: 236 ANNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVS 295

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           ++ +ID Y       K  ++   +     KP   T+NS+I+   K     +AE V ++M 
Sbjct: 296 YSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMM 355

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           + K  P  + Y  +I  +    +V  A + FDE+          T   +++ +   G   
Sbjct: 356 SQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVI 415

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           E   LF    + G+ PD  TY  L   Y KA        L   M Q G+ PN
Sbjct: 416 EPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPN 467



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 9/137 (6%)

Query: 28  RLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 87
           RL  W+  +    G  PD   YN L+  H   R+      K    +++M+  +   P+  
Sbjct: 594 RLLGWMLEK----GIVPDAITYNTLMKQHC-IRNSMNTTTKI---YKRMRN-QGVAPDSN 644

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           TYNIL++   +ARN+ +   L+KE+ E    P + +YN ++  + K     E   +   M
Sbjct: 645 TYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEM 704

Query: 148 KSNQCKPDIITFNLLID 164
           + +    D   +N  +D
Sbjct: 705 RGHGLVADGEIYNFFVD 721



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 9/108 (8%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERCKPNIVTYN 90
           ++  MRN G  PD + YN LI  H     KA+ L +A   +++M  KG     P + +YN
Sbjct: 630 IYKRMRNQGVAPDSNTYNILIKGHC----KARNLKEAWFLYKEMIEKGY---VPTVTSYN 682

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIK 138
            L++   + R   +   LF+E+    L  D   YN  +D   + G ++
Sbjct: 683 ALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVE 730


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 155/341 (45%), Gaps = 24/341 (7%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L+    K+   + A+ L  EMR+ GC PD   YN LI A     D  +AL K L   
Sbjct: 198 YSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEAL-KVLNSL 256

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
                   CKP+ VTY  +L++   +   ++ + L  ++  +  APD  T+N V+ +  +
Sbjct: 257 PSYG----CKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQ 312

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL---MHSKEK-P 189
            G +     VL++M  + C PDIIT++ ++D   K +  D+  ++ K L   M SK   P
Sbjct: 313 KGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIP 372

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              TFN++I +  +  L  +A  V  +M+     P   TY CI+   G+     +  E  
Sbjct: 373 DQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVD--GFLCKSCKTEEAL 430

Query: 250 DELSKL---GKDMKVSTLNAMLEAYCMNGLPTEADL-----LFENSHNMGVTPDSSTYKL 301
           D L+ +   G     +T  ++  A+   GL  E ++     +F     MG++PD   Y  
Sbjct: 431 DLLNLMVSNGLCPDTTTYKSL--AF---GLSREDEMERAIGMFRRVQAMGLSPDKMLYNA 485

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           +     K    +L       M  NG +P++  ++  +E  +
Sbjct: 486 ILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVEGIA 526



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 135/300 (45%), Gaps = 26/300 (8%)

Query: 44  PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNV 102
           PD   YN LI A L  R     +  AL  F  M  + R C P++VTY+ILL A  +    
Sbjct: 158 PDTFTYNPLIRA-LCVR---GCVLDALAVFDDM--LHRGCSPSVVTYSILLDATCKESGY 211

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
            Q   L  E+      PDI TYN +++A    G + E   VL+ + S  CKPD +T+  +
Sbjct: 212 KQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPV 271

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           + S    + +++ +++   +  +   P   TFN++I +  +    G+A  V  +M+    
Sbjct: 272 LKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGC 331

Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS-----------TLNAMLEAY 271
           TP  ITY  I+      D + + R + DE  KL K++              T N ++ + 
Sbjct: 332 TPDIITYSSIM------DGLCKERRV-DEAIKLLKELLAEMVSKNCIPDQVTFNTIITSL 384

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKRMEQNGIVPN 330
           C  GL   A  + +     G  PD +TY  +   +  K+   E    LL  M  NG+ P+
Sbjct: 385 CQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPD 444



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 98/242 (40%), Gaps = 6/242 (2%)

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           LR   Q   +D    L   +  S   P +   N ++     +G + + E V+  +  +  
Sbjct: 68  LRGLVQRGELDGALRLVHSISGSGKDPAVIPCNILIKKLCADGRVADAERVVEALGPSA- 126

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
              IIT+N +++ Y +    D   ++  S+  +   P   T+N +I           A  
Sbjct: 127 --TIITYNTMVNGYCRAGNIDAARRMIDSVPFA---PDTFTYNPLIRALCVRGCVLDALA 181

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           VF  M     +PS +TY  ++          +A  + DE+   G +  + T N ++ A C
Sbjct: 182 VFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMC 241

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             G   EA  +  +  + G  PD+ TY  + K+   +   E   KLL +M  N   P++ 
Sbjct: 242 SQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEV 301

Query: 333 FF 334
            F
Sbjct: 302 TF 303



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 6/191 (3%)

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P +I  N+LI            E+V ++L  S    T+ T+N+M+  Y +A   G  +  
Sbjct: 94  PAVIPCNILIKKLCADGRVADAERVVEALGPSA---TIITYNTMVNGYCRA---GNIDAA 147

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
            + + ++ + P   TY  +I        V  A  +FD++   G    V T + +L+A C 
Sbjct: 148 RRMIDSVPFAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCK 207

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
                +A +L +   + G  PD  TY +L  A           K+L  +   G  P+   
Sbjct: 208 ESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVT 267

Query: 334 FLEALETFSSS 344
           +   L++  SS
Sbjct: 268 YTPVLKSLCSS 278



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 4/175 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I D   ++ +I  + +KG    A+ +  EM   GC PD + YN ++   L    K +   
Sbjct: 371 IPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTE--- 427

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +AL     M     C P+  TY  L    ++   +++   +F+ +    L+PD   YN +
Sbjct: 428 EALDLLNLMVSNGLC-PDTTTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNAI 486

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +    K           + M SN C PD  T+ +L++        ++ +++  +L
Sbjct: 487 LLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVEGIAYEGFLEEAKELLGNL 541


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 155/327 (47%), Gaps = 15/327 (4%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT---AHLHTRDKAKA 65
           AD  I++ +I  + K      A+ LF EM   G RP+   Y++LI+   ++    D ++ 
Sbjct: 220 ADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQL 279

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L+  +         ++  PN+VT+N L+ A  +     +   L+ ++ +  + PDI+TYN
Sbjct: 280 LSDMIE--------KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYN 331

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++ +  +  + + + +   M S  C PD++T+N LI  + K +  +   ++F+ + H 
Sbjct: 332 SLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHR 391

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VS 243
                  T+ ++I           A+ VF++M +    P  +TY   I + G C+N  + 
Sbjct: 392 GLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYS--ILLDGLCNNGKLE 449

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           +A E+FD + K    + +     M+E  C  G   +   LF +    GV P+  TY  + 
Sbjct: 450 KALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMI 509

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
                  + +    LLK+M+++G +PN
Sbjct: 510 SGLCSKRLLQEAYALLKKMKEDGPLPN 536



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 146/323 (45%), Gaps = 9/323 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  DT  ++ LI  +    +   A+ L   M   GC+P+   Y  ++       D   AL
Sbjct: 148 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 207

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
                   KM+   + + ++V +N ++ +  + R+VD    LFKE+    + P++ TY+ 
Sbjct: 208 ----NLLNKMEA-AKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 262

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++      G   +   +LS M   +  P+++TFN LID++ K   F + E+++  ++   
Sbjct: 263 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS 322

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
             P + T+NS++  +       KA+ +F+ M +    P  +TY  +I   G+C +  V  
Sbjct: 323 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIK--GFCKSKRVED 380

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
             E+F E+S  G      T   +++    +G    A  +F+   + GV PD  TY +L  
Sbjct: 381 GTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLD 440

Query: 305 AYTKANMKELVQKLLKRMEQNGI 327
                   E   ++   M+++ I
Sbjct: 441 GLCNNGKLEKALEVFDYMQKSEI 463



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 145/305 (47%), Gaps = 13/305 (4%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CKPNIVT 88
           A+ L  +M   G RPD   +  LI   L   +KA   ++A+    +M  ++R C+PN+VT
Sbjct: 136 AVALVDQMVEMGYRPDTITFTTLIHG-LFLHNKA---SEAVALVDRM--VQRGCQPNLVT 189

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y +++    +  + D    L  ++  + +  D+  +N ++D+  K   + +  ++   M+
Sbjct: 190 YGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEME 249

Query: 149 SNQCKPDIITFNLLID---SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
           +   +P+++T++ LI    SYG+   +    Q+   ++  K  P L TFN++I  + K  
Sbjct: 250 TKGIRPNVVTYSSLISCLCSYGR---WSDASQLLSDMIEKKINPNLVTFNALIDAFVKEG 306

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
              +AE ++  M      P   TY  ++  +   D + +A+++F+ +        V T N
Sbjct: 307 KFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYN 366

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            +++ +C +    +   LF    + G+  D+ TY  L +        +  QK+ K+M  +
Sbjct: 367 TLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD 426

Query: 326 GIVPN 330
           G+ P+
Sbjct: 427 GVPPD 431



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 131/311 (42%), Gaps = 44/311 (14%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKALAKALG 71
           ++ LI    K+G+   A  L+ +M      PD   YN+L+    +H R DKAK +     
Sbjct: 295 FNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQM----- 349

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            F+ M   + C P++VTYN L++   +++ V+    LF+E+    L  D  TY  ++   
Sbjct: 350 -FEFMVSKD-CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 407

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
             +G     + V  +M S+   PDI+T+++L+D        +K  +VF  +  S+ K  +
Sbjct: 408 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI 467

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             + +MI    KA   GK                                V    ++F  
Sbjct: 468 YIYTTMIEGMCKA---GK--------------------------------VDDGWDLFCS 492

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           LS  G    V T N M+   C   L  EA  L +     G  P+S TY  L +A+ +   
Sbjct: 493 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD 552

Query: 312 KELVQKLLKRM 322
           K    +L++ M
Sbjct: 553 KAASAELIREM 563



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 145/355 (40%), Gaps = 46/355 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++KL++ + K  +  + + L  +M+          YN LI         + ALA  LG  
Sbjct: 50  FNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALA-LLGKM 108

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+ G E   P+IVT + LL      + +    AL  ++ E    PD  T+  ++     
Sbjct: 109 MKL-GYE---PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 164

Query: 134 NGMIKEMESVLSRMKSNQCKPDIIT----------------------------------- 158
           +    E  +++ RM    C+P+++T                                   
Sbjct: 165 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 224

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI---INYGKARLQGKAEYVFQ 215
           FN +IDS  K +  D    +FK +     +P + T++S+I    +YG+      A  +  
Sbjct: 225 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGR---WSDASQLLS 281

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            M   K  P+ +T+  +I  +        A +++D++ K   D  + T N+++  +CM+ 
Sbjct: 282 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHD 341

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              +A  +FE   +    PD  TY  L K + K+   E   +L + M   G+V +
Sbjct: 342 RLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 396



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 116/278 (41%), Gaps = 5/278 (1%)

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L  A+G F  M    R  P+IV +N LL A A+ +  D V +L +++    +   +YTYN
Sbjct: 28  LDDAIGLFGGMVK-SRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 86

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++ + +   I    ++L +M     +P I+T + L++ Y   +       +   ++  
Sbjct: 87  ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 146

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVS 243
             +P   TF ++I          +A  +  +M      P+ +TY  ++   G C   +  
Sbjct: 147 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN--GLCKRGDTD 204

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  + +++     +  V   N ++++ C      +A  LF+     G+ P+  TY  L 
Sbjct: 205 LALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 264

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
                        +LL  M +  I PN   F   ++ F
Sbjct: 265 SCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 302



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 94/242 (38%)

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y  +LR       +D    LF  + +S   P I  +N ++ A  K      + S+  +M+
Sbjct: 15  YREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQ 74

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
             +    + T+N+LI+ + +R        +   +M    +P++ T +S++  Y   +   
Sbjct: 75  RLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRIS 134

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A  +  +M  M Y P  IT+  +I      +  S A  + D + + G    + T   ++
Sbjct: 135 DAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVV 194

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
              C  G    A  L        +  D   +  +  +  K    +    L K ME  GI 
Sbjct: 195 NGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIR 254

Query: 329 PN 330
           PN
Sbjct: 255 PN 256



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 5/163 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R  + DT  Y+ LI  +   G    A  +F +M + G  PD   Y+ L+    +     
Sbjct: 390 HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 449

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           KAL +   Y QK       K +I  Y  ++    +A  VD    LF  L    + P++ T
Sbjct: 450 KAL-EVFDYMQK----SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVT 504

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
           YN ++       +++E  ++L +MK +   P+  T+N LI ++
Sbjct: 505 YNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAH 547


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 147/328 (44%), Gaps = 15/328 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L+  + ++G+   A+ L   M   G +P+   Y  ++       D   AL       
Sbjct: 181 FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSAL----NLL 236

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KM+ M   KPN+V Y+ ++    +       + L+ E+ E  + PD++TYN ++D +  
Sbjct: 237 RKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCS 296

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G   E + +L  M   +  P+++T++ LI++Y K + F + E+++  ++     P   T
Sbjct: 297 SGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTIT 356

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NSMI  + K      AE++F  M     +P   T+  +I  Y     +    E+  E++
Sbjct: 357 YNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMT 416

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G     +T N ++  +C+ G    A  L +   + GV PD  T   L          +
Sbjct: 417 ETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLK 476

Query: 314 LVQKLLKRMEQ-----------NGIVPN 330
              ++ K M++           NG+ P+
Sbjct: 477 DALEMFKAMQKSKMDLDASRPFNGVEPD 504



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 144/333 (43%), Gaps = 26/333 (7%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI    K+ +   A  L+ EM   G  P+   YN++I      +++  A A+ + Y 
Sbjct: 322 YSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCK-QNRLDA-AEHMFYV 379

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
              KG   C P++ T+N L+     A+ +D    L  E+ E+ L  D  TYN ++  +  
Sbjct: 380 MATKG---CSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCL 436

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK------- 186
            G +     +  +M S+   PDI+T N L+D            ++FK++  SK       
Sbjct: 437 VGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASR 496

Query: 187 ----EKPTLPTFNSMI---INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
                +P + T+N +I   IN GK     +AE ++++M      P+ ITY  +I   G C
Sbjct: 497 PFNGVEPDVQTYNILISGLINEGKFL---EAEELYKEMPHRGIVPNTITYSSMIN--GLC 551

Query: 240 --DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
               +  A ++FD +        V T N ++  YC  G   +   LF      G+  D+ 
Sbjct: 552 KQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAI 611

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           TY  L   + K         + + M  +G+ P+
Sbjct: 612 TYITLIHGFRKVGNINGALDIFQEMISSGVYPD 644



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 145/324 (44%), Gaps = 14/324 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   +S L+  +  + +   A+ LF +M    CRP+   +  L+        +   + +A
Sbjct: 146 DVVTFSTLLHGLCVEDRVSEALDLFHQM----CRPNVVTFTTLMNGLC----REGRVVEA 197

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           +    +M   +  +PN +TY  ++   C     V  +N L K    S + P++  Y+ ++
Sbjct: 198 VALLDRMVE-DGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAII 256

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D   K+G   +  ++ + M+     PD+ T+N +ID +     + + +++ + ++  K  
Sbjct: 257 DGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKIN 316

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAR 246
           P + T++++I  Y K R   +AE ++ +M      P+ ITY  +I   G+C  + +  A 
Sbjct: 317 PNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMID--GFCKQNRLDAAE 374

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +F  ++  G    V T N +++ YC      +   L       G+  D++TY  L   +
Sbjct: 375 HMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGF 434

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
                      L ++M  +G+ P+
Sbjct: 435 CLVGDLNAALDLSQQMISSGVCPD 458



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 140/328 (42%), Gaps = 21/328 (6%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R  I +T  Y+ +I    K+ +   A  +F  M   GC PD   +N LI  +      AK
Sbjct: 348 RGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYC----GAK 403

Query: 65  ALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +        +M   G+     +  TYN L+       +++    L +++  S + PDI 
Sbjct: 404 RIDDGTELLHEMTETGL---VADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIV 460

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKS-----------NQCKPDIITFNLLIDSYGKRQA 171
           T N ++D    NG +K+   +   M+            N  +PD+ T+N+LI        
Sbjct: 461 TCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGK 520

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
           F + E+++K + H    P   T++SMI    K     +A  +F  M +  ++P  +T+  
Sbjct: 521 FLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNT 580

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           +++ Y     V    E+F E+ + G      T   ++  +   G    A  +F+   + G
Sbjct: 581 LVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSG 640

Query: 292 VTPDSSTYK-LLYKAYTKANMKELVQKL 318
           V PD+ T + +L   ++K  +K  V  L
Sbjct: 641 VYPDTITIRSMLTVLWSKEELKRAVAML 668



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 133/302 (44%), Gaps = 10/302 (3%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ LFS+M  S  RP PSV +      +  R +   L  +L  +QKM+  ++   ++ ++
Sbjct: 61  AIDLFSDMVRS--RPLPSVIDFNKLMGVVVRMERPDLVISL--YQKME-RKQIPCDVYSF 115

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           NIL++       +    + F ++ +    PD+ T++ ++        + E   +  +M  
Sbjct: 116 NILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQM-- 173

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
             C+P+++TF  L++   +     +   +   ++    +P   T+ +++    K      
Sbjct: 174 --CRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVS 231

Query: 210 AEYVFQKMTAMKYT-PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           A  + +KM  M +  P+ + Y  II         S A  ++ E+ + G    + T N M+
Sbjct: 232 ALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMI 291

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           + +C +G  +EA  L +      + P+  TY  L  AY K       ++L   M   GI+
Sbjct: 292 DGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGII 351

Query: 329 PN 330
           PN
Sbjct: 352 PN 353


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 151/330 (45%), Gaps = 10/330 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            +  +A+   ++ LI+   K+G    AM +F+EM+  G RPD   Y+ LI+A      + 
Sbjct: 432 DKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFC----RM 487

Query: 64  KALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKEL-HESILAPD 120
             LA A+  F +M   G+E   PN V Y+ L+       ++ +   L  E+  + I  P+
Sbjct: 488 GRLADAMEKFSQMISIGLE---PNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPN 544

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           I  ++ ++ +    G + +   V + +     +P I+TFN LID Y      +K   V  
Sbjct: 545 IVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLD 604

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           +++    +P + T+N+++  Y K+        +F++M   K  P+ +TY  ++    +  
Sbjct: 605 AMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAG 664

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
             S A+++F E+   G  + + T   +L+  C N L  EA  LF     M    D +   
Sbjct: 665 RTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILN 724

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +  A  K   +E    L   +  +G+VPN
Sbjct: 725 TVINALYKVRRREEANDLFAAISTSGLVPN 754



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 149/328 (45%), Gaps = 10/328 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI+   + G+   AM  FS+M + G  P+  VY++LI       D  KA  K 
Sbjct: 473 DVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKA--KE 530

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           L      KG+ R  PNIV ++ ++ + C + R +D  +     +H     P I T+N ++
Sbjct: 531 LVSEMMSKGIPR--PNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGD-RPTIVTFNSLI 587

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D Y   G +++   VL  M S   +PD++T+N L+  Y K    D    +F+ ++H K K
Sbjct: 588 DGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVK 647

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAR 246
           PT  T++ ++     A     A+ +F +M          TY+  I + G C N     A 
Sbjct: 648 PTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYK--ILLKGLCRNDLTDEAI 705

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +F +L  +     ++ LN ++ A        EA+ LF      G+ P+ STY ++    
Sbjct: 706 TLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNL 765

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFF 334
            K    E    +   ME++G  P+ R  
Sbjct: 766 LKEGSVEEADTMFSSMEKSGCAPSSRLL 793



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 138/310 (44%), Gaps = 5/310 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM-KGMERCKPNIVTYNI 91
           L   M + GC P+   YN +I + L    +++   +AL   Q+M K   RC P++V++N 
Sbjct: 214 LLHRMSDLGCVPNAISYNTVIKS-LCGDSRSQ---EALDMVQRMAKEGGRCSPDVVSFNT 269

Query: 92  LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151
           ++    +   V +   L  E+ +  + PD+ TYN ++DA  K   + + E VL +M    
Sbjct: 270 VIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKG 329

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
            +PD +T+  +I  Y     + +  ++F+ +      P + TFNS + +  K      AE
Sbjct: 330 VEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAE 389

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
            +FQ MT   + P  ++Y  ++  Y      +    +F  ++  G        N ++ A+
Sbjct: 390 EIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAH 449

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
              G+  EA L+F      GV PD  TY  L  A+ +        +   +M   G+ PN 
Sbjct: 450 AKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNT 509

Query: 332 RFFLEALETF 341
             +   +  F
Sbjct: 510 VVYHSLIHGF 519



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 127/268 (47%), Gaps = 9/268 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ +I    K+G+   A  L +EM   G  PD   YN+++ A      KA+A+ KA
Sbjct: 263 DVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALC----KARAMDKA 318

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
               ++M  KG+E   P+ +TY  ++   + + +  +   +F+++    L P I T+N  
Sbjct: 319 ELVLRQMVDKGVE---PDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSF 375

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           M +  K+G  K+ E +   M +    PD++++++L+  Y     F  M  +F S+     
Sbjct: 376 MSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGI 435

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
                 FN +I  + K  +  +A  VF +M      P  +TY  +I+ +     ++ A E
Sbjct: 436 VANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAME 495

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            F ++  +G +      ++++  +CM+G
Sbjct: 496 KFSQMISIGLEPNTVVYHSLIHGFCMHG 523



 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 55/280 (19%), Positives = 112/280 (40%), Gaps = 23/280 (8%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK--------NG 135
           P +     + R  A   + D  + LF EL            NG + A  +        NG
Sbjct: 72  PQVAFVAAIARVRAGTFSTDDAHHLFDELLRQGTPVHNPALNGFLAALARAPDSVSCSNG 131

Query: 136 MIKEMESVLSRMKSNQCKPDII-----TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
               + ++ +R+   +  P +      T+ +L+D   + +  D     F  L+ +  +  
Sbjct: 132 PALVL-ALFNRICREEAGPRVAPLSVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTR 190

Query: 191 LPTFNSMIINYGKARLQGKA-EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               N+ +     A+   +A + +  +M+ +   P+ I+Y  +I     C + SR++E  
Sbjct: 191 TIEANTFLKCLCHAKRTDEAVDVLLHRMSDLGCVPNAISYNTVIK--SLCGD-SRSQEAL 247

Query: 250 DELSKLGKD-----MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           D + ++ K+       V + N ++  +   G  ++A  L       GV PD  TY  +  
Sbjct: 248 DMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVD 307

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           A  KA   +  + +L++M   G+ P+   +   +  +S S
Sbjct: 308 ALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCS 347


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 150/331 (45%), Gaps = 9/331 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R    D   +S LI +  ++G+   A     EMR  G  PD  +Y  +I        +
Sbjct: 291 RGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFC----R 346

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A  + +AL    +M     C P++VTYN LL    + R +     L  E+ E  + PD+ 
Sbjct: 347 AGLMLEALRVRDEMVAFG-CLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLC 405

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           T+  ++  Y ++G I++       +   + +PDI+T+N LID   ++    K  +++   
Sbjct: 406 TFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDD- 464

Query: 183 MHSKEK-PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           MHS+E  P   T++ +I ++ +      A     +M      P+ +TY  II  Y    N
Sbjct: 465 MHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGN 524

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           VS+ ++   ++        + T N ++  Y   G   EA  L +   N  V PD+ TY +
Sbjct: 525 VSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNM 584

Query: 302 LYKAYT-KANMKELVQKLLKRMEQNGIVPNK 331
           +   ++   NM+E    + K+M   GI P++
Sbjct: 585 IISGFSVHGNMQE-ADWVYKKMGARGIEPDR 614



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 152/331 (45%), Gaps = 15/331 (4%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D  IY+ +I    + G    A+ +  EM   GC PD   YN L+        K + L+
Sbjct: 331 MPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLC----KERRLS 386

Query: 68  KALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            A     +MK  ER   P++ T+  L+    +  N+++    F  + +  L PDI TYN 
Sbjct: 387 DAEELLNEMK--ERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNT 444

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++D   + G + +   +   M S +  P+ +T+++LIDS+ ++   D        +++  
Sbjct: 445 LIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKG 504

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P + T+NS+I  Y ++    K +    KM   K  P  ITY  +I  +GY     +  
Sbjct: 505 IVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLI--HGYVKE-GKMH 561

Query: 247 EIFDELSKLGKDMKVS----TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           E F+ L K+ ++  V     T N ++  + ++G   EAD +++     G+ PD  TY  +
Sbjct: 562 EAFN-LLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSM 620

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
              +  A   +   +L   M Q G+ P+ +F
Sbjct: 621 INGHVVAGNSKKSFQLHDEMLQKGLAPDDKF 651



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 150/364 (41%), Gaps = 40/364 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ ++  + + G+   A  +F  M   G  PD   +N LI        +A  L +AL ++
Sbjct: 232 YNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFC----RAGELEEALRFY 287

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD------------- 120
           ++M+G  R  P++V+++ L+    +   +D      +E+ E  L PD             
Sbjct: 288 KEMRG-RRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCR 346

Query: 121 ----------------------IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
                                 + TYN +++   K   + + E +L+ MK     PD+ T
Sbjct: 347 AGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCT 406

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           F  LI  Y +    +K  Q F ++   + +P + T+N++I    +    GKA  ++  M 
Sbjct: 407 FTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMH 466

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           + +  P+ +TY  +I  +     V  A    DE+   G    + T N++++ YC +G  +
Sbjct: 467 SREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVS 526

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           +         +  V PD  TY  L   Y K         LLK ME   + P+   +   +
Sbjct: 527 KGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMII 586

Query: 339 ETFS 342
             FS
Sbjct: 587 SGFS 590



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 142/335 (42%), Gaps = 44/335 (13%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERCKPNIVTYN 90
           + SEM      PD   +N ++ A    R +A  +  A+     M  KG+   KP +VTYN
Sbjct: 181 VISEMEKRCVFPDVVTHNVMVDA----RFRAGDVEAAMALIDSMVSKGI---KPGLVTYN 233

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
            +L+   +    D+   +F+ +    +APD+ ++N ++  + + G ++E       M+  
Sbjct: 234 SVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGR 293

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
           +  PD+++F+ LI  + +R   D   +  + +      P    +  +I  + +A L  +A
Sbjct: 294 RVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEA 353

Query: 211 EYVFQKMTAMKYTPSFITYE-------------------------------CIIT--MYG 237
             V  +M A    P  +TY                                C  T  ++G
Sbjct: 354 LRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHG 413

Query: 238 YC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           YC   N+ +A + FD +S       + T N +++  C  G   +A+ L+++ H+  + P+
Sbjct: 414 YCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPN 473

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             TY +L  ++ +    +     L  M   GIVPN
Sbjct: 474 HVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPN 508



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 117/254 (46%), Gaps = 5/254 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+R    D   ++ LI    + G    A+  F  + +   RPD   YN LI       D 
Sbjct: 396 KERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGD- 454

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L KA   +  M   E   PN VTY+IL+ +  +   VD   A   E+    + P+I 
Sbjct: 455 ---LGKANELWDDMHSRE-IFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIM 510

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++  Y ++G + + +  L +M+ ++  PD+IT+N LI  Y K     +   + K +
Sbjct: 511 TYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIM 570

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
            +   +P   T+N +I  +       +A++V++KM A    P   TY  +I  +    N 
Sbjct: 571 ENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNS 630

Query: 243 SRAREIFDELSKLG 256
            ++ ++ DE+ + G
Sbjct: 631 KKSFQLHDEMLQKG 644



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 123/263 (46%), Gaps = 7/263 (2%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           N  T NI++ +  +     +V+ +  E+ +  + PD+ T+N ++DA  + G ++   +++
Sbjct: 158 NTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALI 217

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             M S   KP ++T+N ++    +   +DK  +VF+++      P + +FN +I  + +A
Sbjct: 218 DSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRA 277

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
               +A   +++M   + TP  +++ C+I ++     +  A E   E+ + G        
Sbjct: 278 GELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIY 337

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
             ++  +C  GL  EA  + +     G  PD  TY  L     K       ++LL  M++
Sbjct: 338 TMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKE 397

Query: 325 NGIVPNKRFFLEALETFSSSLAG 347
            G+ P+       L TF++ + G
Sbjct: 398 RGVPPD-------LCTFTTLIHG 413



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 63/152 (41%)

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           ++ ++ S  +    T N M+ +Y K    G+ + V  +M      P  +T+  ++     
Sbjct: 147 YRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFR 206

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             +V  A  + D +   G    + T N++L+    NG   +A  +F      GV PD  +
Sbjct: 207 AGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRS 266

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + +L   + +A   E   +  K M    + P+
Sbjct: 267 FNMLIGGFCRAGELEEALRFYKEMRGRRVTPD 298


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 150/330 (45%), Gaps = 10/330 (3%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           + Y  D   Y  LI  + K GQTR A+ L  +M     RP+   Y+ +I        K +
Sbjct: 154 KGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLC----KDR 209

Query: 65  ALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +A AL  F  +  +G+     ++V YN L+  C       +   L   +    + PD Y
Sbjct: 210 LIADALRLFSLVTSRGI---LVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDY 266

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           T+N ++DA  K G I E + V + M     KPDI+T+N L++ +       +  ++F  +
Sbjct: 267 TFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRM 326

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           +    +P +  +N +I  Y K  +  +A  +F+++      P+  TY  +I        +
Sbjct: 327 VKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRM 386

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           S  +E+ DE+   G+   + T N  L+A+C +  P E  +        G+ PD   Y ++
Sbjct: 387 SCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSK-PYEKAISLFRQIVQGIWPDFYMYDVI 445

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
            + + K    ++ ++ L+ +  +G  PN R
Sbjct: 446 VENFCKGEKLKIAEEALQHLLIHGCCPNVR 475



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 143/325 (44%), Gaps = 8/325 (2%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R  + D   Y+ LI      GQ R A  L + M      PD   +N L+ A      K  
Sbjct: 224 RGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALC----KEG 279

Query: 65  ALAKALGYFQKMKGMERC-KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            + +A G F  M  M+R  KP+IVTYN L+     + NV +   LF  + +  L PD+  
Sbjct: 280 RIVEAQGVFAVM--MKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLN 337

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN +++ Y K  M+ E   +   ++     P++ T+N LID   K      ++++   + 
Sbjct: 338 YNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMC 397

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
              + P + T+N  +  + K++   KA  +F+++    + P F  Y+ I+  +   + + 
Sbjct: 398 DRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQGIW-PDFYMYDVIVENFCKGEKLK 456

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A E    L   G    V T   M+ A C +    EA  L     +    PD+ T++ + 
Sbjct: 457 IAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETII 516

Query: 304 KAYTKANMKELVQKLLKRMEQNGIV 328
            A  + N  +  +KL   M + G+V
Sbjct: 517 GALQERNETDKAEKLRLEMIERGLV 541



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 154/369 (41%), Gaps = 44/369 (11%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           ++ KL+  + + G    A+ LFS++ + G  P  +    LI  + H    + A +  LG 
Sbjct: 57  VFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFS-LLGT 115

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             KM      +PN+VT+N L+        V +  A   +L       D ++Y  +++   
Sbjct: 116 ILKMGF----QPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLC 171

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF------------- 179
           KNG  ++   +L +M+ +  +P++IT++ +ID   K +      ++F             
Sbjct: 172 KNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVV 231

Query: 180 --KSLMH--------------------SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
              SL+H                        P   TFN ++    K     +A+ VF  M
Sbjct: 232 AYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVM 291

Query: 218 TAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
                 P  +TY  +  M G+C  +NVS ARE+F+ + K G +  V   N ++  YC   
Sbjct: 292 MKRGEKPDIVTYNAL--MEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKID 349

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335
           +  EA +LF+      + P+ +TY  L     K      VQ+L+  M   G  P+   + 
Sbjct: 350 MVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYN 409

Query: 336 EALETFSSS 344
             L+ F  S
Sbjct: 410 IFLDAFCKS 418



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 143/332 (43%), Gaps = 12/332 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---HLHTRDKAKALAKAL 70
           ++ LI      G    AM    ++   G   D   Y +LI     +  TRD       AL
Sbjct: 128 FNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRD-------AL 180

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
              QKM+  +  +PN++TY+ ++    + R +     LF  +    +  D+  YN ++  
Sbjct: 181 QLLQKMEE-DLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHG 239

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
               G  +E   +L+ M      PD  TFN+L+D+  K     + + VF  +M   EKP 
Sbjct: 240 CCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPD 299

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           + T+N+++  +  +    +A  +F +M      P  + Y  +I  Y   D V  A  +F 
Sbjct: 300 IVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFK 359

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+        ++T N++++  C  G  +    L +   + G +PD  TY +   A+ K+ 
Sbjct: 360 EIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSK 419

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
             E    L +++ Q GI P+   +   +E F 
Sbjct: 420 PYEKAISLFRQIVQ-GIWPDFYMYDVIVENFC 450



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/365 (21%), Positives = 135/365 (36%), Gaps = 83/365 (22%)

Query: 55  AHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE 114
            HLH   K   +   L  F +M   +   P I  ++ LL A  +  +     +LF +LH 
Sbjct: 26  GHLHP-PKFHTVDDTLLSFNRML-RKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHS 83

Query: 115 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY------GK 168
             + P I T   +++ Y     +    S+L  +     +P+++TFN LI+ +       K
Sbjct: 84  KGITPSIATLTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSK 143

Query: 169 RQAF--DKME---------------------------QVFKSLMHSKEKPTLPTFNSMII 199
             AF  D M                            Q+ + +     +P L T++++I 
Sbjct: 144 AMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVID 203

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD------------------- 240
              K RL   A  +F  +T+       + Y  +I  +G C                    
Sbjct: 204 GLCKDRLIADALRLFSLVTSRGILVDVVAYNSLI--HGCCSVGQWREATRLLTMMVRGNI 261

Query: 241 ------------------NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
                              +  A+ +F  + K G+   + T NA++E +C++   +EA  
Sbjct: 262 NPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARE 321

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           LF      G+ PD   Y +L   Y K +M +    L K +    +VPN       L T++
Sbjct: 322 LFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPN-------LATYN 374

Query: 343 SSLAG 347
           S + G
Sbjct: 375 SLIDG 379



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 7/188 (3%)

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           F  ++     P +  F+ ++    +      A  +F ++ +   TPS  T   +I  Y +
Sbjct: 43  FNRMLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCH 102

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             ++S A  +   + K+G    + T N ++  +C+NG+ ++A     +    G   D  +
Sbjct: 103 QAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFS 162

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLT 358
           Y  L     K        +LL++ME++ + PN       L T+S+ + G        D  
Sbjct: 163 YGSLINGLCKNGQTRDALQLLQKMEEDLVRPN-------LITYSTVIDGLCKDRLIADAL 215

Query: 359 RSLSTAKS 366
           R  S   S
Sbjct: 216 RLFSLVTS 223


>gi|410110099|gb|AFV61129.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           trifolia]
          Length = 440

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 138/297 (46%), Gaps = 5/297 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YNA+I        KAK   +
Sbjct: 48  GDLVLYSNLIELSRKXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFRE 103

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +MK      PN  +Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 104 ARSLIGEMK-XAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMI 162

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +     +
Sbjct: 163 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIE 222

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSM++ YGK     KA  + Q+M +    P+ ITY  II+++G    + RA  +
Sbjct: 223 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAML 282

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           F +L   G ++       M+ AY   GL   A  L          P  +   +L  A
Sbjct: 283 FQKLRSSGXEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGA 339



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 139/302 (46%), Gaps = 5/302 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF EMR     PD   Y+ LIT H     K      AL + QKM+  +R   ++V Y+ L
Sbjct: 2   LFDEMRQRALSPDRYTYSTLIT-HF---GKEGLFDAALSWLQKME-QDRVPGDLVLYSNL 56

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  S++  MK    
Sbjct: 57  IELSRKXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKXAGV 116

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+  +  +A+ 
Sbjct: 117 MPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 176

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T N+M+  Y 
Sbjct: 177 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 236

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
                 +A+ L +   + G+ P+S TY  +   + K    +    L +++  +G   ++ 
Sbjct: 237 KTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQI 296

Query: 333 FF 334
            F
Sbjct: 297 LF 298



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 153/327 (46%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 7   RQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKXCDY 66

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  
Sbjct: 67  SKAIS----IFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKXAGVMPNTA 121

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 181

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG     
Sbjct: 182 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 241

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + G   D   ++ +
Sbjct: 242 EKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTM 301

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  +++   +P
Sbjct: 302 IVAYERAGLVAHAKRLLHELKRPDNIP 328



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 111/224 (49%)

Query: 107 ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
            LF E+ +  L+PD YTY+ ++  +GK G+     S L +M+ ++   D++ ++ LI+  
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
            K   + K   +F  L  S   P L  +N+MI  +GKA+L  +A  +  +M      P+ 
Sbjct: 61  RKXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKXAGVMPNT 120

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
            +Y  ++TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF  
Sbjct: 121 ASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              MG+ P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 224



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 146/360 (40%), Gaps = 42/360 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L  EM+ +G  P+ + Y+ L+T ++     
Sbjct: 77  KRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKXAGVMPNTASYSTLLTMYVEN--- 133

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 134 -KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 192

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 193 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 252

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           S   +P+ IT++ +I  +GK    D+   +F+ L  S  +     F +MI+ Y +A L  
Sbjct: 253 SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVA 312

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++      P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 313 HAKRLLHELK----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMI 368

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
                    +    +F+    +G  PDS     +  AY K    +    +   M++ G V
Sbjct: 369 HLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAXVLNAYGKLQEFDKANDVYMEMQEVGCV 428


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 152/329 (46%), Gaps = 8/329 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D    S +I  + K G+   A+ +F  M   G  P+  VY+ALI    H   KA+ + 
Sbjct: 123 VPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALI----HGLCKARKMD 178

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            AL    +MK    C P+ +TYN+L+    ++ +V+   A F E+ E+   PD+YTYN +
Sbjct: 179 CALEMLAQMK-KAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNIL 237

Query: 128 MDAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +  + K G        L++  + N C  DI T+  ++D   K +  ++   + + +  + 
Sbjct: 238 ISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANG 297

Query: 187 EKPTLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
             PT+ T+N+++    K  RL+ +A  + +K+     TP  +TY  +I   G       A
Sbjct: 298 CTPTIATYNALLNGLCKMGRLE-EAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEA 356

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            ++F E++  G  +      A++      G   +A  +++   + G  PD  T   +   
Sbjct: 357 YKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDG 416

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            +KA       ++ K ME  G+ PN+  +
Sbjct: 417 LSKAGRIGAAVRIFKSMEARGLAPNEVVY 445



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 151/320 (47%), Gaps = 8/320 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +YS LI  + K  +   A+ + ++M+ + C PD   YN LI     + D   A A    +
Sbjct: 163 VYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARA----F 218

Query: 73  FQKMKGMER-CKPNIVTYNILLRACAQARNVDQV-NALFKELHESILAPDIYTYNGVMDA 130
           F +M  +E  CKP++ TYNIL+    +A N D   ++L +E   +    DI+TY  ++D 
Sbjct: 219 FDEM--LEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDW 276

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             KN  I+E  +++ ++ +N C P I T+N L++   K    ++   + + ++ +   P 
Sbjct: 277 LAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPD 336

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           + T+ S+I   GK +   +A  +F++M         + Y  +I        + +A  ++ 
Sbjct: 337 VVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYK 396

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            ++  G    V TL+ M++     G    A  +F++    G+ P+   Y  L     KA 
Sbjct: 397 TMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKAR 456

Query: 311 MKELVQKLLKRMEQNGIVPN 330
             +   ++L +M++    P+
Sbjct: 457 KMDCALEMLAQMKKAFCTPD 476



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 145/345 (42%), Gaps = 43/345 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+ +   DT  Y+ LI  + K G    A   F EM  +GC+PD   YN LI+      + 
Sbjct: 188 KKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGN- 246

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
             A + +L     + G   C  +I TY  ++   A+ + +++  AL +++  +   P I 
Sbjct: 247 TDAASHSLAQETTING---CTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIA 303

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ------------ 170
           TYN +++   K G ++E   +L ++  N C PD++T+  LID  GK +            
Sbjct: 304 TYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEM 363

Query: 171 -----AFDKM------------------EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
                A D +                    V+K++      P + T ++MI    KA   
Sbjct: 364 ALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRI 423

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLN 265
           G A  +F+ M A    P+ + Y  +I  +G C    +  A E+  ++ K        T N
Sbjct: 424 GAAVRIFKSMEARGLAPNEVVYSALI--HGLCKARKMDCALEMLAQMKKAFCTPDTITYN 481

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            +++  C +G    A   F+     G  PD  TY +L   + KA 
Sbjct: 482 ILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAG 526



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 132/303 (43%), Gaps = 8/303 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ L  ++  +GC P  + YNAL    L+   K   L +A+   +K+     C P++VTY
Sbjct: 5   AVALMEKITANGCTPTIATYNAL----LNGLCKMGRLEEAIDLLRKIVD-NGCTPDVVTY 59

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
             L+    + +   +   LFKE+    LA D   Y  ++    + G I +  SV   M S
Sbjct: 60  TSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTS 119

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
           + C PD++T + +ID   K        ++FKS+      P    ++++I    KAR    
Sbjct: 120 HGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDC 179

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  +  +M     TP  ITY  +I       +V  AR  FDE+ + G    V T N ++ 
Sbjct: 180 ALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILIS 239

Query: 270 AYCMNGLPTEA--DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
            +C  G    A   L  E + N G T D  TY  +     K    E    L++++  NG 
Sbjct: 240 GFCKAGNTDAASHSLAQETTIN-GCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGC 298

Query: 328 VPN 330
            P 
Sbjct: 299 TPT 301



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 131/299 (43%), Gaps = 5/299 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++  + K  +   A+ L  ++  +GC P  + YNAL    L+   K   L +A
Sbjct: 266 DIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNAL----LNGLCKMGRLEEA 321

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +   +K+     C P++VTY  L+    + +   +   LFKE+    LA D   Y  ++ 
Sbjct: 322 IDLLRKIVD-NGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIR 380

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              + G I +  SV   M S+ C PD++T + +ID   K        ++FKS+      P
Sbjct: 381 ELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAP 440

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               ++++I    KAR    A  +  +M     TP  ITY  +I       +V  AR  F
Sbjct: 441 NEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFF 500

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           DE+ + G    V T N ++  +C  G    A  +F++  +   + +  TY  L     K
Sbjct: 501 DEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCK 559



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 137/319 (42%), Gaps = 6/319 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI  +GK+ ++  A  LF EM   G   D   Y ALI   L T      + +A
Sbjct: 55  DVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQT----GKIPQA 110

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              ++ M     C P++VT + ++   ++A  +     +FK +    LAP+   Y+ ++ 
Sbjct: 111 SSVYKTMTS-HGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIH 169

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K   +     +L++MK   C PD IT+N+LID   K    +     F  ++ +  KP
Sbjct: 170 GLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKP 229

Query: 190 TLPTFNSMIINYGKARLQGKAEY-VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
            + T+N +I  + KA     A + + Q+ T    T    TY  I+        +  A  +
Sbjct: 230 DVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVAL 289

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            ++++  G    ++T NA+L   C  G   EA  L     + G TPD  TY  L     K
Sbjct: 290 MEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGK 349

Query: 309 ANMKELVQKLLKRMEQNGI 327
                   KL K M   G+
Sbjct: 350 EKRSFEAYKLFKEMALRGL 368



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 101/246 (41%), Gaps = 39/246 (15%)

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
           +++  AL +++  +   P I TYN +++   K G ++E   +L ++  N C PD++T+  
Sbjct: 2   IEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTS 61

Query: 162 LIDSYGKRQ-----------------AFDKM------------------EQVFKSLMHSK 186
           LID  GK +                 A D +                    V+K++    
Sbjct: 62  LIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHG 121

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSR 244
             P + T ++MI    KA   G A  +F+ M A    P+ + Y  +I  +G C    +  
Sbjct: 122 CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALI--HGLCKARKMDC 179

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A E+  ++ K        T N +++  C +G    A   F+     G  PD  TY +L  
Sbjct: 180 ALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILIS 239

Query: 305 AYTKAN 310
            + KA 
Sbjct: 240 GFCKAG 245



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/194 (20%), Positives = 87/194 (44%)

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           I+E  +++ ++ +N C P I T+N L++   K    ++   + + ++ +   P + T+ S
Sbjct: 2   IEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTS 61

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           +I   GK +   +A  +F++M         + Y  +I        + +A  ++  ++  G
Sbjct: 62  LIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHG 121

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
               V TL+ M++     G    A  +F++    G+ P+   Y  L     KA   +   
Sbjct: 122 CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCAL 181

Query: 317 KLLKRMEQNGIVPN 330
           ++L +M++    P+
Sbjct: 182 EMLAQMKKAFCTPD 195



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+ +   DT  Y+ LI  + K G    A   F EM  +GC+PD   YN LI+       K
Sbjct: 469 KKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFC----K 524

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE 114
           A     A G F  M    RC  N+VTY  L+    + R + + +  F+ + E
Sbjct: 525 AGNTDAACGVFDDMSS-SRCSANVVTYGALISGLCKRRQLTKASLYFQHMKE 575


>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 680

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 145/319 (45%), Gaps = 8/319 (2%)

Query: 15  SKLIAV---MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           S L+AV   +G  G+T  A  LF E+R +G  P    YNAL+  ++ T     +L  A  
Sbjct: 277 STLVAVILALGNSGRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRT----GSLKDAEF 332

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
              +M+     KP+  TY++L+   A A   +    + KE+  S + P+ Y ++ ++  Y
Sbjct: 333 VVSEMEKAG-VKPDEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANY 391

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
              G  ++   VL  MKS+  +PD   +N++ID++GK    D     F+ ++     P +
Sbjct: 392 RDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDI 451

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+N++I  + K+     AE +F +M    Y+P   TY  +I   G      +      +
Sbjct: 452 VTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSK 511

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G      T   +++ Y  +G  ++A    E   + G  P S+ Y  L  AY +  +
Sbjct: 512 MQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGL 571

Query: 312 KELVQKLLKRMEQNGIVPN 330
            EL     + M   G+ P+
Sbjct: 572 SELAVNAFRLMTTEGLTPS 590



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 155/366 (42%), Gaps = 38/366 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT-----------------AH 56
           Y+ LI    + G    A+ L S+MR  G +PD   Y+++I                  A 
Sbjct: 172 YNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYAE 231

Query: 57  LHT----------RDKAKALAKALGYFQKMKGMERCK-----PNIVTYNILLRACAQARN 101
           + T           D     +KA    + M+ +   +     P   T   ++ A   +  
Sbjct: 232 IETDKIEIDGHLMNDIIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGR 291

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
             +  ALF+E+ E+ L P    YN ++  Y + G +K+ E V+S M+    KPD  T++L
Sbjct: 292 THEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSL 351

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           LID Y     ++    V K +  S  +P    F+ ++ NY   R +G+ +  FQ +  MK
Sbjct: 352 LIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANY---RDKGEWQKSFQVLKDMK 408

Query: 222 YT---PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
            +   P    Y  +I  +G  + +  A   F+ +   G    + T N +++ +C +G   
Sbjct: 409 SSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHD 468

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
            A+ LF      G +P  +TY ++  +  +    E V   L +M+  G+ PN   +   +
Sbjct: 469 MAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLV 528

Query: 339 ETFSSS 344
           + +  S
Sbjct: 529 DVYGKS 534



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 145/325 (44%), Gaps = 9/325 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI V    G+   A  +  EM  S  +P+  V++ ++  +   RDK +     
Sbjct: 345 DEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANY---RDKGEWQKS- 400

Query: 70  LGYFQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              FQ +K M+    +P+   YN+++    +   +D   A F+ +    + PDI T+N +
Sbjct: 401 ---FQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTL 457

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D + K+G     E + S M+     P I T+N++I+S G++Q ++++      +     
Sbjct: 458 IDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGL 517

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P   T+ +++  YGK+     A    + + +  + P+   Y  +I  Y        A  
Sbjct: 518 QPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVN 577

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
            F  ++  G    +  LN+++ A+  +    EA  + +      + PD  TY  L KA  
Sbjct: 578 AFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALI 637

Query: 308 KANMKELVQKLLKRMEQNGIVPNKR 332
           +    + V  + + M  +G  P+++
Sbjct: 638 RVEKFQKVPAVYEEMVASGCTPDRK 662



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 112/255 (43%), Gaps = 7/255 (2%)

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y+IL+ A  ++  + +    F      +L P   TYN ++ A  +NG +++  +++S+M+
Sbjct: 142 YSILINALGRSEKLYEA---FLLSQRQVLTP--LTYNALIGACARNGDVEKALNLMSKMR 196

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDK--MEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
            +  +PD + ++ +I    +    D   +++++  +   K +      N +I+ + KA  
Sbjct: 197 RDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYAEIETDKIEIDGHLMNDIIVGFSKAGD 256

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
             +A        +    P   T   +I   G       A  +F+E+ + G + +    NA
Sbjct: 257 PTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGLEPRTRAYNA 316

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           +L+ Y   G   +A+ +       GV PD  TY LL   Y  A   E  + +LK ME + 
Sbjct: 317 LLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEASN 376

Query: 327 IVPNKRFFLEALETF 341
           + PN   F   L  +
Sbjct: 377 VQPNSYVFSRILANY 391



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 134/332 (40%), Gaps = 12/332 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +QK     +   +YS LI  +G+  +   A  L      +     P  YNALI A     
Sbjct: 129 LQKHNLCFSYELLYSILINALGRSEKLYEAFLLSQRQVLT-----PLTYNALIGACARNG 183

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQ--VNALFKELHESILA 118
           D    + KAL    KM+  +  +P+ V Y+ +++   ++  +D   +  L+ E+    + 
Sbjct: 184 D----VEKALNLMSKMR-RDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYAEIETDKIE 238

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
            D +  N ++  + K G        L+  +SN   P   T   +I + G      + E +
Sbjct: 239 IDGHLMNDIIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEAL 298

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           F+ +  +  +P    +N+++  Y +      AE+V  +M      P   TY  +I +Y +
Sbjct: 299 FEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAH 358

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
                 AR +  E+            + +L  Y   G   ++  + ++  + GV PD   
Sbjct: 359 AGRWESARIVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHF 418

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y ++   + K N  +      +RM   GI P+
Sbjct: 419 YNVMIDTFGKYNCLDHAMATFERMLSEGIPPD 450



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 93/189 (49%), Gaps = 9/189 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR Y      Y+ +I  MG++ +        S+M++ G +P+   Y  L+  +     K
Sbjct: 478 QQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVY----GK 533

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQ--VNALFKELHESILAPD 120
           +   + A+   + +K     KP    YN L+ A AQ R + +  VNA F+ +    L P 
Sbjct: 534 SGRFSDAIECLEVLKSTG-FKPTSTMYNALINAYAQ-RGLSELAVNA-FRLMTTEGLTPS 590

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           +   N +++A+G++    E  +VL  MK N  +PD++T+  L+ +  + + F K+  V++
Sbjct: 591 LLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVYE 650

Query: 181 SLMHSKEKP 189
            ++ S   P
Sbjct: 651 EMVASGCTP 659


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 146/324 (45%), Gaps = 14/324 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ ++A     GQ   A  L ++M      PD   YN LI         + ALA  
Sbjct: 133 DVMVYNAMVAGYCGAGQLDAARRLVADMP---VEPDAYTYNTLIRGLCGRGRTSNALAVL 189

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F++      C P++VTY ILL A  +     Q   L  E+H+   APDI TYN V++
Sbjct: 190 EDMFRR-----GCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLN 244

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              + G +++    L  + S  C+P+ +++N+++      + ++  E++ + + H    P
Sbjct: 245 GICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPP 304

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + TFN +I    +  L   A  V ++M     TP+ ++Y  ++  +     + +A E  
Sbjct: 305 NVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFV 364

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKAY 306
           + +   G    + + N +L A C NG   E D+  E  H +   G +P   +Y  +    
Sbjct: 365 ELMVSRGCYPDIVSYNTLLTALCRNG---EVDVAIELLHQLKDKGCSPVLISYNTVIDGL 421

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
           TKA   +   +LL  M   G+ P+
Sbjct: 422 TKAGKTKEALELLDEMTSKGLQPD 445



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 137/330 (41%), Gaps = 15/330 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI  +  +G+T  A+ +  +M   GC PD   Y  L+          +A  K 
Sbjct: 165 DAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILL----------EATCKR 214

Query: 70  LGYFQKMKGMER-----CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            GY Q MK ++      C P+IVTYN++L    Q   V+      K L      P+  +Y
Sbjct: 215 SGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSY 274

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N V+         ++ E ++  M    C P+++TFN+LI    +R   +   +V + +  
Sbjct: 275 NIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQ 334

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P   ++N ++  + K +   KA    + M +    P  ++Y  ++T       V  
Sbjct: 335 YGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDV 394

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A E+  +L   G    + + N +++     G   EA  L +   + G+ PD  TY  +  
Sbjct: 395 AIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIAS 454

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
              + +  E   +   +++  GI P    +
Sbjct: 455 GLCREDRIEEAVRTFCKVQDMGIRPTAALY 484



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 144/342 (42%), Gaps = 11/342 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R  + D   Y+ L+    K+   + AM L  EM + GC PD   YN ++          
Sbjct: 194 RRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVE 253

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            A+      F K      C+PN V+YNI+L+    A   +    L +E+      P++ T
Sbjct: 254 DAME-----FLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVT 308

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           +N ++    + G+++    VL +M    C P+ +++N L+ ++ K++   K  +  + ++
Sbjct: 309 FNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMV 368

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCD 240
                P + ++N+++    +    G+ +   + +  +K    +P  I+Y  +I       
Sbjct: 369 SRGCYPDIVSYNTLLTALCR---NGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAG 425

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
               A E+ DE++  G    + T + +    C      EA   F    +MG+ P ++ Y 
Sbjct: 426 KTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYN 485

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            +     K         L   M  +G +PN+  +   +E  +
Sbjct: 486 AILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLA 527



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/296 (20%), Positives = 107/296 (36%), Gaps = 15/296 (5%)

Query: 50  NALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV--TYNILLRACAQARNVDQVNA 107
           +A  T  L    +   L  AL     + G+    P  V     ++ + CA  R  D    
Sbjct: 67  SASATERLRVLVRRGELDDALRLVDSLAGLNPPSPAAVGPCAALIKKLCASGRTADARRV 126

Query: 108 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
           L          PD+  YN ++  Y   G +     +++ M     +PD  T+N LI    
Sbjct: 127 LAAS------GPDVMVYNAMVAGYCGAGQLDAARRLVADMPV---EPDAYTYNTLIRGLC 177

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
            R        V + +      P + T+  ++    K     +A  +  +M      P  +
Sbjct: 178 GRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIV 237

Query: 228 TYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
           TY   + + G C    V  A E    L   G +    + N +L+         +A+ L E
Sbjct: 238 TYN--VVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLME 295

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
              + G  P+  T+ +L     +  + E   ++L++M Q G  PN   +   L  F
Sbjct: 296 EMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAF 351


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 152/337 (45%), Gaps = 6/337 (1%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ +I V+ K  +   A+ LF  M  +   P    YN +I  +        A +
Sbjct: 302 VLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYS 361

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
             L   Q+ KG   C P++V+YN +L    +   VD+    F+E+ +  + P++ TYN +
Sbjct: 362 --LLERQRRKG---CIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIM 415

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D   K G ++    V   MK     P++IT N+++D   K Q  D    +F+ L H   
Sbjct: 416 IDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTC 475

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P   T+ S+I   G+     +A  ++++M      P+ + Y  +I  +  C       +
Sbjct: 476 RPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHK 535

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           I++E+ +LG    +  LN  ++     G   +   LF+   N+G  PD+ +Y +L     
Sbjct: 536 IYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLV 595

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           KA       +L   M++ G V + R +   ++ F  S
Sbjct: 596 KAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKS 632



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 131/306 (42%), Gaps = 9/306 (2%)

Query: 23  KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82
           K G+      LF E++N G  PD   Y  LI    H   KA    +A   F  MK  + C
Sbjct: 561 KAGEIEKGRALFQEIKNLGFIPDARSYTILI----HGLVKAGFAHEAYELFYTMKE-QGC 615

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
             +   YN ++    ++  V++   L +E+      P + TY  V+D   K   + E   
Sbjct: 616 VLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYM 675

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +    KS   + +++ ++ LID +GK    D+   + + LM     P + T+N ++    
Sbjct: 676 LFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALV 735

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMK 260
           KA    +A   FQ M  +K TP++ITY   I ++G C     ++A   + E+ K G    
Sbjct: 736 KAEEISEALVCFQSMKDLKCTPNYITYS--ILIHGLCKIRKFNKAFVFWQEMQKQGFKPN 793

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           V T   M+      G   EAD LFE     G   DS+ Y  + +  + AN      +L +
Sbjct: 794 VFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFE 853

Query: 321 RMEQNG 326
                G
Sbjct: 854 EARLKG 859



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 139/313 (44%), Gaps = 9/313 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K   +I D   Y+ LI  + K G    A  LF  M+  GC  D   YN +I        K
Sbjct: 576 KNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFC----K 631

Query: 63  AKALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           +  + KA    ++MK  G E   P +VTY  ++   A+   +D+   LF+E     +  +
Sbjct: 632 SGKVNKAYQLLEEMKTKGHE---PTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELN 688

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           +  Y+ ++D +GK G I E   ++  +      P++ T+N L+D+  K +   +    F+
Sbjct: 689 VVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQ 748

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           S+   K  P   T++ +I    K R   KA   +Q+M    + P+  TY  +I+      
Sbjct: 749 SMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAG 808

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           N+  A  +F++  + G     +  NA++E        ++A  LFE +   G +  + T  
Sbjct: 809 NIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCV 868

Query: 301 LLYKAYTKANMKE 313
           +L  +  KA   E
Sbjct: 869 VLLDSLHKAECIE 881



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 143/327 (43%), Gaps = 12/327 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  +  +++ LI V  ++G+   A+ L  EM+++   PD  +YN  I        KA  +
Sbjct: 231 YAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCF----GKAGKV 286

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             A  +F +MK       + VTY  ++    +A  +++   LF+ + ++   P  Y YN 
Sbjct: 287 DMAWKFFHEMKANGLVLDD-VTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNT 345

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  YG  G  ++  S+L R +   C P ++++N ++   G++   D+  + F+  M   
Sbjct: 346 MIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEE-MKKD 404

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVS 243
             P L T+N MI    KA   GK E       AMK     P+ IT   ++        + 
Sbjct: 405 AIPNLSTYNIMIDMLCKA---GKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLD 461

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  IF+ L          T  +++E    +G   EA  L+E   +    P++  Y  L 
Sbjct: 462 DACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLI 521

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
           + + K   KE   K+   M + G  P+
Sbjct: 522 RNFFKCGRKEDGHKIYNEMLRLGCSPD 548



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 141/323 (43%), Gaps = 9/323 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  LI  +G+ G+   A  L+ +M ++   P+  VY +LI      R+  K   K 
Sbjct: 478 DAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLI------RNFFKCGRKE 531

Query: 70  LGY--FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            G+  + +M  +  C P+++  N  +    +A  +++  ALF+E+      PD  +Y  +
Sbjct: 532 DGHKIYNEMLRLG-CSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTIL 590

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +    K G   E   +   MK   C  D   +N +ID + K    +K  Q+ + +     
Sbjct: 591 IHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGH 650

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +PT+ T+ S+I    K     +A  +F++  +     + + Y  +I  +G    +  A  
Sbjct: 651 EPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYL 710

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           I +EL + G    V T N +L+A       +EA + F++  ++  TP+  TY +L     
Sbjct: 711 IMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLC 770

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           K           + M++ G  PN
Sbjct: 771 KIRKFNKAFVFWQEMQKQGFKPN 793



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 137/317 (43%), Gaps = 6/317 (1%)

Query: 23  KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82
           K  + R A      MR    RP  S Y  LI A   +RD    L      FQ+M+ +   
Sbjct: 177 KSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLT----LFQQMQELGY- 231

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
             N+  +  L+R  A+   VD   +L  E+  + L PD+  YN  +D +GK G +     
Sbjct: 232 AVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWK 291

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
               MK+N    D +T+  +I    K    ++  ++F+ +  +K+ P    +N+MI+ YG
Sbjct: 292 FFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYG 351

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
            A     A  + ++       PS ++Y CI++  G    V  A + F+E+ K      +S
Sbjct: 352 MAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIP-NLS 410

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T N M++  C  G    A ++ +   + G+ P+  T  ++     KA   +    + + +
Sbjct: 411 TYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGL 470

Query: 323 EQNGIVPNKRFFLEALE 339
           +     P+   +   +E
Sbjct: 471 DHKTCRPDAVTYCSLIE 487



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 133/316 (42%), Gaps = 6/316 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I   G  G+   A  L    R  GC P    YN +    L    +   + +AL  F
Sbjct: 343 YNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCI----LSCLGRKGQVDEALKKF 398

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++MK  +   PN+ TYNI++    +A  ++    +   + ++ L P++ T N ++D   K
Sbjct: 399 EEMK--KDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCK 456

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              + +  S+   +    C+PD +T+  LI+  G+    D+  ++++ ++ + + P    
Sbjct: 457 AQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVV 516

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + S+I N+ K   +     ++ +M  +  +P  +     +        + + R +F E+ 
Sbjct: 517 YTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIK 576

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
            LG      +   ++      G   EA  LF      G   D+  Y  +   + K+    
Sbjct: 577 NLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVN 636

Query: 314 LVQKLLKRMEQNGIVP 329
              +LL+ M+  G  P
Sbjct: 637 KAYQLLEEMKTKGHEP 652



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/337 (21%), Positives = 142/337 (42%), Gaps = 5/337 (1%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I +  +Y+ LI    K G+      +++EM   GC PD      L+  ++    KA  + 
Sbjct: 511 IPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDL----LLLNTYMDCVFKAGEIE 566

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           K    FQ++K +    P+  +Y IL+    +A    +   LF  + E     D   YN V
Sbjct: 567 KGRALFQEIKNLGFI-PDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTV 625

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D + K+G + +   +L  MK+   +P ++T+  +ID   K    D+   +F+       
Sbjct: 626 IDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGI 685

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +  +  ++S+I  +GK     +A  + +++     TP+  T+ C++      + +S A  
Sbjct: 686 ELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALV 745

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
            F  +  L       T + ++   C      +A + ++     G  P+  TY  +     
Sbjct: 746 CFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLA 805

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           KA        L ++ ++ G V +   +   +E  S++
Sbjct: 806 KAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNA 842



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 146/343 (42%), Gaps = 10/343 (2%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           Q+++  I     Y+ +++ +G+KGQ   A+  F EM+     P+ S YN +I        
Sbjct: 366 QRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLC---- 420

Query: 62  KAKALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
           KA  L  AL     MK  G+    PN++T NI++    +A+ +D   ++F+ L      P
Sbjct: 421 KAGKLETALVVRDAMKDAGL---FPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRP 477

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D  TY  +++  G++G + E   +  +M      P+ + +  LI ++ K    +   +++
Sbjct: 478 DAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIY 537

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             ++     P L   N+ +    KA    K   +FQ++  + + P   +Y  +I      
Sbjct: 538 NEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKA 597

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
                A E+F  + + G  +     N +++ +C +G   +A  L E     G  P   TY
Sbjct: 598 GFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTY 657

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
             +     K +  +    L +  +  GI  N   +   ++ F 
Sbjct: 658 GSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFG 700



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/170 (20%), Positives = 74/170 (43%)

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +N L+    + + F+ +EQ+ + +  +   P+  T   +++++ K+R   +A    Q M 
Sbjct: 133 YNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMR 192

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
            +K+ P+F  Y  +I       +      +F ++ +LG  + V     ++  +   G   
Sbjct: 193 KLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVD 252

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
            A  L +   +  + PD   Y +    + KA   ++  K    M+ NG+V
Sbjct: 253 AALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLV 302



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 72/161 (44%), Gaps = 5/161 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L+  + K  +   A+  F  M++  C P+   Y+ LI    H   K +   KA  ++
Sbjct: 727 WNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILI----HGLCKIRKFNKAFVFW 782

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           Q+M+  +  KPN+ TY  ++   A+A N+ + + LF++  E     D   YN +++    
Sbjct: 783 QEMQK-QGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSN 841

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
                +   +    +   C     T  +L+DS  K +  ++
Sbjct: 842 ANRASDAYRLFEEARLKGCSIYTKTCVVLLDSLHKAECIEQ 882


>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
 gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 148/320 (46%), Gaps = 5/320 (1%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T     +I  +G  G+T  A  +F EMR++G +P    YNAL+  ++    KA  L  A 
Sbjct: 305 TATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYV----KAGLLKDAE 360

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
               +M+      PN  TY+ L+ A   A   +    + KE+  S + P+ Y ++ ++ +
Sbjct: 361 FVVSEME-RSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSS 419

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           Y   G  ++   VL  M+++  +PD + +N++ID++GK    D     F  ++    +P 
Sbjct: 420 YRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPD 479

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             T+N++I  + +A    +AE +F++M    Y+P   T+  +I  +G  +     + +  
Sbjct: 480 TVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLA 539

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            +   G      T   +++ Y  +G   +A    ++    G+ P S+ Y  L  AY +  
Sbjct: 540 HMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRG 599

Query: 311 MKELVQKLLKRMEQNGIVPN 330
           + E      + M  +G+ P+
Sbjct: 600 LSEQAVSAFRAMRVDGLKPS 619



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 161/347 (46%), Gaps = 13/347 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMW--LFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +Q  Y +D   YS +I  + +K +   A+   L+ E+       D  + N +I       
Sbjct: 225 RQDGYPSDFVNYSLIIRSLMRKNRVDSAILQKLYREIECDKLELDVQLSNDIIVGFAKAG 284

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           D +KAL + LG  Q   G+      +V     L  C   R V +  A+F+E+ ++ L P 
Sbjct: 285 DLSKAL-EFLGVVQG-SGLSVKTATLVAVIWALGNCG--RTV-EAEAIFEEMRDNGLKPR 339

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
              YN ++  Y K G++K+ E V+S M+ +   P+  T++ LID+YG    ++    V K
Sbjct: 340 TRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLK 399

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT---PSFITYECIITMYG 237
            +  S  +P    F+ ++ +Y   R +G+ +  FQ +  M+ +   P  + Y  +I  +G
Sbjct: 400 EMEASNVQPNAYVFSRILSSY---RDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFG 456

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
             + +  A   FD +   G +    T N +++ +C  G    A+ LFE     G +P ++
Sbjct: 457 KFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNT 516

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           T+ ++  ++      + V+ LL  M   G+VPN   +   ++ +  S
Sbjct: 517 TFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKS 563



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 148/344 (43%), Gaps = 5/344 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  + + +I    K G    A+     ++ SG     SV  A + A +          +A
Sbjct: 269 DVQLSNDIIVGFAKAGDLSKALEFLGVVQGSGL----SVKTATLVAVIWALGNCGRTVEA 324

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F++M+     KP    YN LLR   +A  +     +  E+  S ++P+  TY+ ++D
Sbjct: 325 EAIFEEMRD-NGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLID 383

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           AYG  G  +    VL  M+++  +P+   F+ ++ SY  +  + K  QV + + +S  +P
Sbjct: 384 AYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRP 443

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               +N MI  +GK      A   F +M +    P  +T+  +I  +       RA E+F
Sbjct: 444 DRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELF 503

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +E+ + G     +T N M+ ++       +   L  +  + G+ P+S TY  L   Y K+
Sbjct: 504 EEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKS 563

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSA 353
                  + L  M+  G+ P+   +   +  ++      Q+ SA
Sbjct: 564 GRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSA 607



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 139/321 (43%), Gaps = 9/321 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI   G  G+   A  +  EM  S  +P+  V++ +++++   RDK +        F
Sbjct: 378 YSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSY---RDKGEWQKS----F 430

Query: 74  QKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           Q ++ ME    +P+ V YN+++    +   +D   A F  +    + PD  T+N ++D +
Sbjct: 431 QVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCH 490

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G     E +   M      P   TFN++I+S+G ++ +D ++ +   +      P  
Sbjct: 491 CRAGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNS 550

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+ ++I  YGK+     A      M A    PS   Y  +I  Y       +A   F  
Sbjct: 551 VTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRA 610

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G    +  LN+++ A+  +    EA  + +      + PD  TY  L KA  +   
Sbjct: 611 MRVDGLKPSLLALNSLINAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLMKALIRVEK 670

Query: 312 KELVQKLLKRMEQNGIVPNKR 332
            + V  + + M  +G  P+++
Sbjct: 671 FDKVPSVYEEMILSGCTPDRK 691



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 116/255 (45%), Gaps = 7/255 (2%)

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y+IL+ A  Q+  + +   L +  +   L P   TYN ++ A  +N  +++  ++++RM+
Sbjct: 171 YSILIHALGQSEKLYEAFLLSQRQN---LTP--LTYNALISACARNNDLEKALNLITRMR 225

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDK--MEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
            +    D + ++L+I S  ++   D   ++++++ +   K +  +   N +I+ + KA  
Sbjct: 226 QDGYPSDFVNYSLIIRSLMRKNRVDSAILQKLYREIECDKLELDVQLSNDIIVGFAKAGD 285

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
             KA      +     +    T   +I   G C     A  IF+E+   G   +    NA
Sbjct: 286 LSKALEFLGVVQGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNA 345

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           +L  Y   GL  +A+ +       GV+P+  TY  L  AY  A   E  + +LK ME + 
Sbjct: 346 LLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASN 405

Query: 327 IVPNKRFFLEALETF 341
           + PN   F   L ++
Sbjct: 406 VQPNAYVFSRILSSY 420



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 140/332 (42%), Gaps = 12/332 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +QK     +   +YS LI  +G+  +   A +L S+ +N      P  YNALI+A     
Sbjct: 158 LQKHNLCFSYELLYSILIHALGQSEKLYEA-FLLSQRQNLT----PLTYNALISACARNN 212

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQ--VNALFKELHESILA 118
           D    L KAL    +M+  +    + V Y++++R+  +   VD   +  L++E+    L 
Sbjct: 213 D----LEKALNLITRMR-QDGYPSDFVNYSLIIRSLMRKNRVDSAILQKLYREIECDKLE 267

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
            D+   N ++  + K G + +    L  ++ +       T   +I + G      + E +
Sbjct: 268 LDVQLSNDIIVGFAKAGDLSKALEFLGVVQGSGLSVKTATLVAVIWALGNCGRTVEAEAI 327

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           F+ +  +  KP    +N+++  Y KA L   AE+V  +M     +P+  TY  +I  YG 
Sbjct: 328 FEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGN 387

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
                 AR +  E+            + +L +Y   G   ++  +     N GV PD   
Sbjct: 388 AGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVF 447

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y ++   + K N  +       RM   GI P+
Sbjct: 448 YNVMIDTFGKFNCLDHAMATFDRMLSEGIEPD 479


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 152/337 (45%), Gaps = 6/337 (1%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ +I V+ K  +   A+ LF  M  +   P    YN +I  +        A +
Sbjct: 302 VLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYS 361

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
             L   Q+ KG   C P++V+YN +L    +   VD+    F+E+ +  + P++ TYN +
Sbjct: 362 --LLERQRRKG---CIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIM 415

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D   K G ++    V   MK     P++IT N+++D   K Q  D    +F+ L H   
Sbjct: 416 IDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTC 475

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P   T+ S+I   G+     +A  ++++M      P+ + Y  +I  +  C       +
Sbjct: 476 RPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHK 535

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           I++E+ +LG    +  LN  ++     G   +   LF+   N+G  PD+ +Y +L     
Sbjct: 536 IYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLV 595

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           KA       +L   M++ G V + R +   ++ F  S
Sbjct: 596 KAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKS 632



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 131/306 (42%), Gaps = 9/306 (2%)

Query: 23  KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82
           K G+      LF E++N G  PD   Y  LI    H   KA    +A   F  MK  + C
Sbjct: 561 KAGEIEKGRALFQEIKNLGFIPDARSYTILI----HGLVKAGFAHEAYELFYTMKE-QGC 615

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
             +   YN ++    ++  V++   L +E+      P + TY  V+D   K   + E   
Sbjct: 616 VLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYM 675

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +    KS   + +++ ++ LID +GK    D+   + + LM     P + T+N ++    
Sbjct: 676 LFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALV 735

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMK 260
           KA    +A   FQ M  +K TP++ITY   I ++G C     ++A   + E+ K G    
Sbjct: 736 KAEEISEALVCFQSMKDLKCTPNYITYS--ILIHGLCKIRKFNKAFVFWQEMQKQGFKPN 793

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           V T   M+      G   EAD LFE     G   DS+ Y  + +  + AN      +L +
Sbjct: 794 VFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFE 853

Query: 321 RMEQNG 326
                G
Sbjct: 854 EARLKG 859



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 139/313 (44%), Gaps = 9/313 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K   +I D   Y+ LI  + K G    A  LF  M+  GC  D   YN +I        K
Sbjct: 576 KNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFC----K 631

Query: 63  AKALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           +  + KA    ++MK  G E   P +VTY  ++   A+   +D+   LF+E     +  +
Sbjct: 632 SGKVNKAYQLLEEMKTKGHE---PTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELN 688

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           +  Y+ ++D +GK G I E   ++  +      P++ T+N L+D+  K +   +    F+
Sbjct: 689 VVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQ 748

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           S+   K  P   T++ +I    K R   KA   +Q+M    + P+  TY  +I+      
Sbjct: 749 SMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAG 808

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           N+  A  +F++  + G     +  NA++E        ++A  LFE +   G +  + T  
Sbjct: 809 NIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCV 868

Query: 301 LLYKAYTKANMKE 313
           +L  +  KA   E
Sbjct: 869 VLLDSLHKAECIE 881



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 142/327 (43%), Gaps = 12/327 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  +  +++ LI V  ++G+   A+ L  EM+++   PD  +YN  I        KA  +
Sbjct: 231 YAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCF----GKAGKV 286

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             A   F +MK       + VTY  ++    +A  +++   LF+ + ++   P  Y YN 
Sbjct: 287 DMAWKXFHEMKANGLVLDD-VTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNT 345

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  YG  G  ++  S+L R +   C P ++++N ++   G++   D+  + F+  M   
Sbjct: 346 MIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEE-MKKD 404

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVS 243
             P L T+N MI    KA   GK E       AMK     P+ IT   ++        + 
Sbjct: 405 AIPNLSTYNIMIDMLCKA---GKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLD 461

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  IF+ L          T  +++E    +G   EA  L+E   +    P++  Y  L 
Sbjct: 462 DACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLI 521

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
           + + K   KE   K+   M + G  P+
Sbjct: 522 RNFFKCGRKEDGHKIYNEMLRLGCSPD 548



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 141/323 (43%), Gaps = 9/323 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  LI  +G+ G+   A  L+ +M ++   P+  VY +LI      R+  K   K 
Sbjct: 478 DAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLI------RNFFKCGRKE 531

Query: 70  LGY--FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            G+  + +M  +  C P+++  N  +    +A  +++  ALF+E+      PD  +Y  +
Sbjct: 532 DGHKIYNEMLRLG-CSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTIL 590

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +    K G   E   +   MK   C  D   +N +ID + K    +K  Q+ + +     
Sbjct: 591 IHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGH 650

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +PT+ T+ S+I    K     +A  +F++  +     + + Y  +I  +G    +  A  
Sbjct: 651 EPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYL 710

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           I +EL + G    V T N +L+A       +EA + F++  ++  TP+  TY +L     
Sbjct: 711 IMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLC 770

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           K           + M++ G  PN
Sbjct: 771 KIRKFNKAFVFWQEMQKQGFKPN 793



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 137/317 (43%), Gaps = 6/317 (1%)

Query: 23  KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82
           K  + R A      MR    RP  S Y  LI A   +RD    L      FQ+M+ +   
Sbjct: 177 KSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLT----LFQQMQELGY- 231

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
             N+  +  L+R  A+   VD   +L  E+  + L PD+  YN  +D +GK G +     
Sbjct: 232 AVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWK 291

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
               MK+N    D +T+  +I    K    ++  ++F+ +  +K+ P    +N+MI+ YG
Sbjct: 292 XFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYG 351

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
            A     A  + ++       PS ++Y CI++  G    V  A + F+E+ K      +S
Sbjct: 352 MAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIP-NLS 410

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T N M++  C  G    A ++ +   + G+ P+  T  ++     KA   +    + + +
Sbjct: 411 TYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGL 470

Query: 323 EQNGIVPNKRFFLEALE 339
           +     P+   +   +E
Sbjct: 471 DHKTCRPDAVTYCSLIE 487



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 133/316 (42%), Gaps = 6/316 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I   G  G+   A  L    R  GC P    YN +    L    +   + +AL  F
Sbjct: 343 YNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCI----LSCLGRKGQVDEALKKF 398

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++MK  +   PN+ TYNI++    +A  ++    +   + ++ L P++ T N ++D   K
Sbjct: 399 EEMK--KDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCK 456

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              + +  S+   +    C+PD +T+  LI+  G+    D+  ++++ ++ + + P    
Sbjct: 457 AQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVV 516

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + S+I N+ K   +     ++ +M  +  +P  +     +        + + R +F E+ 
Sbjct: 517 YTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIK 576

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
            LG      +   ++      G   EA  LF      G   D+  Y  +   + K+    
Sbjct: 577 NLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVN 636

Query: 314 LVQKLLKRMEQNGIVP 329
              +LL+ M+  G  P
Sbjct: 637 KAYQLLEEMKTKGHEP 652



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/337 (21%), Positives = 142/337 (42%), Gaps = 5/337 (1%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I +  +Y+ LI    K G+      +++EM   GC PD      L+  ++    KA  + 
Sbjct: 511 IPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDL----LLLNTYMDCVFKAGEIE 566

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           K    FQ++K +    P+  +Y IL+    +A    +   LF  + E     D   YN V
Sbjct: 567 KGRALFQEIKNLGFI-PDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTV 625

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D + K+G + +   +L  MK+   +P ++T+  +ID   K    D+   +F+       
Sbjct: 626 IDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGI 685

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +  +  ++S+I  +GK     +A  + +++     TP+  T+ C++      + +S A  
Sbjct: 686 ELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALV 745

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
            F  +  L       T + ++   C      +A + ++     G  P+  TY  +     
Sbjct: 746 CFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLA 805

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           KA        L ++ ++ G V +   +   +E  S++
Sbjct: 806 KAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNA 842



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 146/343 (42%), Gaps = 10/343 (2%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           Q+++  I     Y+ +++ +G+KGQ   A+  F EM+     P+ S YN +I        
Sbjct: 366 QRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLC---- 420

Query: 62  KAKALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
           KA  L  AL     MK  G+    PN++T NI++    +A+ +D   ++F+ L      P
Sbjct: 421 KAGKLETALVVRDAMKDAGL---FPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRP 477

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D  TY  +++  G++G + E   +  +M      P+ + +  LI ++ K    +   +++
Sbjct: 478 DAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIY 537

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             ++     P L   N+ +    KA    K   +FQ++  + + P   +Y  +I      
Sbjct: 538 NEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKA 597

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
                A E+F  + + G  +     N +++ +C +G   +A  L E     G  P   TY
Sbjct: 598 GFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTY 657

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
             +     K +  +    L +  +  GI  N   +   ++ F 
Sbjct: 658 GSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFG 700



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/170 (20%), Positives = 74/170 (43%)

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +N L+    + + F+ +EQ+ + +  +   P+  T   +++++ K+R   +A    Q M 
Sbjct: 133 YNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMR 192

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
            +K+ P+F  Y  +I       +      +F ++ +LG  + V     ++  +   G   
Sbjct: 193 KLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVD 252

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
            A  L +   +  + PD   Y +    + KA   ++  K    M+ NG+V
Sbjct: 253 AALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLV 302



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 77/197 (39%), Gaps = 40/197 (20%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IYS LI   GK G+   A  +  E+   G  P+   +N L+ A +    KA+ +++AL  
Sbjct: 691 IYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALV----KAEEISEALVC 746

Query: 73  FQKMKGMERC-----------------------------------KPNIVTYNILLRACA 97
           FQ MK + +C                                   KPN+ TY  ++   A
Sbjct: 747 FQSMKDL-KCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLA 805

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           +A N+ + + LF++  E     D   YN +++         +   +    +   C     
Sbjct: 806 KAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTK 865

Query: 158 TFNLLIDSYGKRQAFDK 174
           T  +L+DS  K +  ++
Sbjct: 866 TCVVLLDSLHKAECIEQ 882


>gi|410110095|gb|AFV61127.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           montevidensis]
          Length = 418

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 138/297 (46%), Gaps = 5/297 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YNA+I        KAK   +
Sbjct: 32  GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFRE 87

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +MK      PN  +Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 88  ARSLIGEMKA-AGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMI 146

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +     +
Sbjct: 147 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIE 206

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSM++ YGK     KA  + Q+M +    P+ ITY  II+++G    + RA  +
Sbjct: 207 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAML 266

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           F +L   G ++       M+ AY   GL   A  L          P  +   +L  A
Sbjct: 267 FQKLRSSGXEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGA 323



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 149/316 (47%), Gaps = 5/316 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI   GK+G    A+    +M       D  +Y+ LI       D +KA++     F
Sbjct: 2   YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAIS----IF 57

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++K      P++V YN ++    +A+   +  +L  E+  + + P+  +Y+ ++  Y +
Sbjct: 58  SRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLTMYVE 116

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +     +P + +
Sbjct: 117 NKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 176

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N+++  YG A L G+A ++F+ M       + +TY  ++ +YG      +A  +  E+ 
Sbjct: 177 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 236

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G +    T + ++  +   G    A +LF+   + G   D   ++ +  AY +A +  
Sbjct: 237 SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVA 296

Query: 314 LVQKLLKRMEQNGIVP 329
             ++LL  +++   +P
Sbjct: 297 HAKRLLHELKRPDNIP 312



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 147/360 (40%), Gaps = 42/360 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L  EM+ +G  P+ + Y+ L+T ++     
Sbjct: 61  KRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLTMYVEN--- 117

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 118 -KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 176

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 177 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 236

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           S   +P+ IT++ +I  +GK    D+   +F+ L  S  +     F +MI+ Y +A L  
Sbjct: 237 SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVA 296

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++      P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 297 HAKRLLHELK----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMI 352

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
                    +    +F+    +G  PDS    ++  AY K    +    +   M++ G V
Sbjct: 353 HLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVGCV 412



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 102/208 (49%)

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY+ ++  +GK G+     S L +M+ ++   D++ ++ LI+   K   + K   +F  L
Sbjct: 1   TYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 60

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
             S   P L  +N+MI  +GKA+L  +A  +  +M A    P+  +Y  ++TMY      
Sbjct: 61  KRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLTMYVENKKF 120

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A  +F E+ ++   + ++T N M++ Y   G+  EAD LF     MG+ P+  +Y  L
Sbjct: 121 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 180

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
            + Y  A +      L + M++  I  N
Sbjct: 181 LRVYGDAELFGEAIHLFRLMQRKNIEQN 208



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 108/243 (44%)

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           TY+ L+    +    D   +  +++ +  +  D+  Y+ +++   K     +  S+ SR+
Sbjct: 1   TYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 60

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           K +   PD++ +N +I+ +GK + F +   +   +  +   P   ++++++  Y + +  
Sbjct: 61  KRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLTMYVENKKF 120

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            +A  VF +M  +K      T   +I +YG       A ++F  + K+G +  V + N +
Sbjct: 121 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 180

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           L  Y    L  EA  LF       +  +  TY  +   Y K    E    L++ M+  GI
Sbjct: 181 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGI 240

Query: 328 VPN 330
            PN
Sbjct: 241 EPN 243


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 151/315 (47%), Gaps = 9/315 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G+TR A+ L   +     + D  +Y+ +I +      K K +  A   +
Sbjct: 178 YGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMC----KDKNVNDAFDLY 233

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M    R   NIVTY+ L+        +     LF ++    + PD+YT+N ++DA+ K
Sbjct: 234 SEMVS-RRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCK 292

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +KE ++ L+ M     KPDI+T+N L+D Y      +  + +  ++ H     T+ +
Sbjct: 293 EGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRS 352

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDE 251
           +N +I  + K ++  +A  +F++M   +  P+ ITY  +I   G C +  +S A E+ D 
Sbjct: 353 YNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLID--GLCKSGRISYALELIDL 410

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G+   + T +++L+A C N L  +A  L     + G+ P+  TY +L     K   
Sbjct: 411 MHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGR 470

Query: 312 KELVQKLLKRMEQNG 326
            E  + + + +   G
Sbjct: 471 LEDARNIFEDLLVKG 485



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 158/358 (44%), Gaps = 48/358 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +YS +I  M K      A  L+SEM +     +   Y+ALI+           L  A
Sbjct: 209 DVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFC----IVGKLKDA 264

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           +G F KM   E   P++ T+NIL+ A C + R  +  N L   + + I  PDI TYN +M
Sbjct: 265 IGLFNKMTS-ENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGI-KPDIVTYNSLM 322

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D Y     +   +S+L+ M        + ++N++I+ + K +  D+  ++FK + H +  
Sbjct: 323 DGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIF 382

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECII------------ 233
           P + T+NS+I    K+   G+  Y  + +  M      P  ITY  I+            
Sbjct: 383 PNVITYNSLIDGLCKS---GRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKA 439

Query: 234 --------------TMY-------GYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEA 270
                          MY       G C    +  AR IF++L   G ++ V+T   M++ 
Sbjct: 440 IALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQG 499

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           +C +GL  EA  L     +    PD+ TY+++  +    +  +  +KLL+ M   G++
Sbjct: 500 FCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMITRGLL 557



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 145/324 (44%), Gaps = 5/324 (1%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  DT   +  I     KGQ   A+    ++   G   D   Y  LI        K    
Sbjct: 136 YEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLC----KVGET 191

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             AL   +++ G +  + ++V Y+ ++ +  + +NV+    L+ E+    ++ +I TY+ 
Sbjct: 192 RAALELLRRVDG-KLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSA 250

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  +   G +K+   + ++M S    PD+ TFN+L+D++ K     + +     +M   
Sbjct: 251 LISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQG 310

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            KP + T+NS++  Y        A+ +   M+    T +  +Y  +I  +     V +A 
Sbjct: 311 IKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAM 370

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           ++F E+        V T N++++  C +G  + A  L +  H+ G  PD  TY  +  A 
Sbjct: 371 KLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDAL 430

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K ++ +    LL +++  GI PN
Sbjct: 431 CKNHLVDKAIALLIKLKDQGIRPN 454



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 138/305 (45%), Gaps = 33/305 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL--HTRDKAKALAKALG 71
           Y+ LI  + K G+   A+ L   M + G +PD   Y++++ A    H  DKA AL   L 
Sbjct: 388 YNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKL- 446

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
              K +G+   +PN+ TY IL+    +   ++    +F++L        + TY  ++  +
Sbjct: 447 ---KDQGI---RPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGF 500

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
             +G+  E  S+LS+MK N C PD IT+ ++I S   +   DK E++ + ++    +  L
Sbjct: 501 CSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMI---TRGLL 557

Query: 192 PTFNSMIINYGKARLQGKAEYV-FQKMTAMKYTPSFIT--YECIITMYGYCDNVSRAREI 248
            +F    + YG   L   A    F    +++ T S  +  +  ++    YCD V     +
Sbjct: 558 YSF----LEYGSWSLSFMAAPAHFLNNDSLQCTSSQESGNWAKLLLERIYCDCVLTKSNM 613

Query: 249 FD--------------ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
            D              + SK G  + V+T   M++ +C +GL  E+  L       G  P
Sbjct: 614 RDKDVECPSVIIYSTCDWSKQGYILDVNTYTVMIQGFCSHGLFDESLALLSKMEVNGCIP 673

Query: 295 DSSTY 299
           D+ TY
Sbjct: 674 DAVTY 678



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 118/275 (42%), Gaps = 9/275 (3%)

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           K+K     L  FQKM+     KPN V +NIL+    Q   +    ++  ++ +    PD 
Sbjct: 82  KSKHYHTVLSLFQKME-YRGIKPNFVNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDT 140

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQ 177
            T N  +  +   G I +  +   ++ +     D +++  LI+   K    R A + + +
Sbjct: 141 ITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRR 200

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           V   L+    +  +  ++++I +  K +    A  ++ +M + + + + +TY  +I+ + 
Sbjct: 201 VDGKLV----QLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFC 256

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
               +  A  +F++++    +  V T N +++A+C  G   EA          G+ PD  
Sbjct: 257 IVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIV 316

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
           TY  L   Y   N   + + +L  M   G+    R
Sbjct: 317 TYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVR 351



 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 29/146 (19%), Positives = 60/146 (41%)

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           +F  L+     P    F  ++ +  K++       +FQKM      P+F+ +  +I  + 
Sbjct: 57  LFNCLLRQNPTPPDMEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNILINCFC 116

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
               +  A  +  ++ K+G +    TLN  ++ +C+ G   +A    +    +G   D  
Sbjct: 117 QLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQV 176

Query: 298 TYKLLYKAYTKANMKELVQKLLKRME 323
           +Y  L     K        +LL+R++
Sbjct: 177 SYGTLINGLCKVGETRAALELLRRVD 202



 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 65/157 (41%), Gaps = 5/157 (3%)

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           I++++     +  N ++  +      ++ N   PD+  F  ++ S  K + +  +  +F+
Sbjct: 36  IHSFSTSTTFHNNNDVVDAVSLFNCLLRQNPTPPDM-EFGQILGSLVKSKHYHTVLSLFQ 94

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC- 239
            + +   KP    FN +I  + +  L   A  V  K+  M Y P  IT    I   G+C 
Sbjct: 95  KMEYRGIKPNFVNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIK--GFCL 152

Query: 240 -DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
              + +A    D+L  LG  +   +   ++   C  G
Sbjct: 153 KGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVG 189


>gi|414888269|tpg|DAA64283.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 616

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 161/414 (38%), Gaps = 74/414 (17%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRL------------------------------- 29
           MQ+Q W   D  I++ +I V+G++G   L                               
Sbjct: 129 MQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPAESRTALSYTSLIAAYARNA 188

Query: 30  ----AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMK--GMERCK 83
               A  L  +M+ +G  P  + YN ++ A     D        LG F +M+       +
Sbjct: 189 LHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDASPSVR 248

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG-------M 136
           P++ TYN LL A A     DQ   L   + E+ ++PD  +Y  ++DA+   G       +
Sbjct: 249 PDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAFASAGNLSRAAEL 308

Query: 137 IKEMES----------------------------VLSRMKSNQCKPDIITFNLLIDSYGK 168
             EM +                            VL +M+++ C P   T+ +L+D YG+
Sbjct: 309 FSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPTAATYRVLLDLYGR 368

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
           +  FD + Q+F+  M +   P   T+N +   +G      +   +F  M      P  +T
Sbjct: 369 QGRFDGVRQLFRE-MRTAVPPDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVT 427

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
            E ++   G+      ARE+ + +++ G          ++EA     +  EA + F    
Sbjct: 428 CENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMT 487

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN-GIVPNKRFFLEALETF 341
            +G  P   TY  L  AY +  + +  + +  RM  N GI  +K  F   +E +
Sbjct: 488 EIGSLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAY 541



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 133/322 (41%), Gaps = 7/322 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  Y  ++      G    A  LFSEM  +G   D S Y  L+ AH     +  A A A
Sbjct: 285 DTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHT----RVGATADA 340

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +   ++M+  + C P   TY +LL    +    D V  LF+E+  ++  PD  TYN +  
Sbjct: 341 VAVLRQMQA-DGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTAV-PPDTATYNVLFR 398

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +G  G  KE+  +   M     +PD++T   ++ + G         +V + +      P
Sbjct: 399 VFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVP 458

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           T   +  ++   G A +  +A   F  MT +   P+  TY  +   Y        A  IF
Sbjct: 459 TADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQEAEAIF 518

Query: 250 DELS-KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             +S   G      + +A++EAYC      +A   +         PD  + + +  AY  
Sbjct: 519 SRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCI 578

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
           A + +  ++  + ++ +  +P+
Sbjct: 579 AGVIDESKEQFEELQSSVTMPS 600



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 133/301 (44%), Gaps = 27/301 (8%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARN--VDQVNALFKEL-HESILAPDIYTY 124
           ++L  F+ M+    C+P+   + I++    +     +D+   +F +L  ES  A    +Y
Sbjct: 121 RSLRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPAESRTA---LSY 177

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ----AFDKMEQVFK 180
             ++ AY +N + +E  ++L +MK+    P   T+N ++ +  +       FD +  +F 
Sbjct: 178 TSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLGLFA 237

Query: 181 SLMHSKE---KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
            + H      +P L T+N+++       L  ++E +   M     +P  ++Y  I+  + 
Sbjct: 238 EMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAFA 297

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
              N+SRA E+F E++  G     S    ++EA+   G   +A  +       G  P ++
Sbjct: 298 SAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPTAA 357

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR-------------FFLEALETFSSS 344
           TY++L   Y +    + V++L + M +  + P+               FF E +E F   
Sbjct: 358 TYRVLLDLYGRQGRFDGVRQLFREM-RTAVPPDTATYNVLFRVFGDGGFFKEVVELFHDM 416

Query: 345 L 345
           L
Sbjct: 417 L 417



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 4/155 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  +G       A   F+ M   G  P    YNAL  A+     +     +A   F
Sbjct: 463 YTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYA----RGGLFQEAEAIF 518

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M      + +  +++ L+ A  Q   +D     + E+ +S   PD  +  GV++AY  
Sbjct: 519 SRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCI 578

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
            G+I E +     ++S+   P +I + +++  Y +
Sbjct: 579 AGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYAR 613



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 84/209 (40%), Gaps = 34/209 (16%)

Query: 148 KSNQCKPDIITFNLLIDSYGKRQA--FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
           + + C+PD     ++I   G++     DK  +VF  L    E  T  ++ S+I  Y +  
Sbjct: 131 RQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDL--PAESRTALSYTSLIAAYARNA 188

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
           L  +A  +  +M A    P+  TY  ++     C   +     FD L  L  +M+     
Sbjct: 189 LHEEARALLDQMKATGVAPTAATYNTVLAA---CARATDPPVPFDMLLGLFAEMR----- 240

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
                               +  +  V PD +TY  L  A    ++ +  + LL  M + 
Sbjct: 241 --------------------HDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEA 280

Query: 326 GIVPNKRFFLEALETFSSSLAGSQSGSAK 354
           G+ P+   +   ++ F+S  AG+ S +A+
Sbjct: 281 GVSPDTVSYRHIVDAFAS--AGNLSRAAE 307


>gi|414888270|tpg|DAA64284.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 890

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 161/414 (38%), Gaps = 74/414 (17%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRL------------------------------- 29
           MQ+Q W   D  I++ +I V+G++G   L                               
Sbjct: 151 MQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPAESRTALSYTSLIAAYARNA 210

Query: 30  ----AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMK--GMERCK 83
               A  L  +M+ +G  P  + YN ++ A     D        LG F +M+       +
Sbjct: 211 LHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDASPSVR 270

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG-------M 136
           P++ TYN LL A A     DQ   L   + E+ ++PD  +Y  ++DA+   G       +
Sbjct: 271 PDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAFASAGNLSRAAEL 330

Query: 137 IKEMES----------------------------VLSRMKSNQCKPDIITFNLLIDSYGK 168
             EM +                            VL +M+++ C P   T+ +L+D YG+
Sbjct: 331 FSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPTAATYRVLLDLYGR 390

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
           +  FD + Q+F+  M +   P   T+N +   +G      +   +F  M      P  +T
Sbjct: 391 QGRFDGVRQLFRE-MRTAVPPDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVT 449

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
            E ++   G+      ARE+ + +++ G          ++EA     +  EA + F    
Sbjct: 450 CENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMT 509

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN-GIVPNKRFFLEALETF 341
            +G  P   TY  L  AY +  + +  + +  RM  N GI  +K  F   +E +
Sbjct: 510 EIGSLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAY 563



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 133/322 (41%), Gaps = 7/322 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  Y  ++      G    A  LFSEM  +G   D S Y  L+ AH     +  A A A
Sbjct: 307 DTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAH----TRVGATADA 362

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +   ++M+  + C P   TY +LL    +    D V  LF+E+  ++  PD  TYN +  
Sbjct: 363 VAVLRQMQA-DGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTAV-PPDTATYNVLFR 420

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +G  G  KE+  +   M     +PD++T   ++ + G         +V + +      P
Sbjct: 421 VFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVP 480

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           T   +  ++   G A +  +A   F  MT +   P+  TY  +   Y        A  IF
Sbjct: 481 TADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQEAEAIF 540

Query: 250 DELS-KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             +S   G      + +A++EAYC      +A   +         PD  + + +  AY  
Sbjct: 541 SRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCI 600

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
           A + +  ++  + ++ +  +P+
Sbjct: 601 AGVIDESKEQFEELQSSVTMPS 622



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 133/301 (44%), Gaps = 27/301 (8%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARN--VDQVNALFKEL-HESILAPDIYTY 124
           ++L  F+ M+    C+P+   + I++    +     +D+   +F +L  ES  A    +Y
Sbjct: 143 RSLRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPAESRTA---LSY 199

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ----AFDKMEQVFK 180
             ++ AY +N + +E  ++L +MK+    P   T+N ++ +  +       FD +  +F 
Sbjct: 200 TSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLGLFA 259

Query: 181 SLMHSKE---KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
            + H      +P L T+N+++       L  ++E +   M     +P  ++Y  I+  + 
Sbjct: 260 EMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAFA 319

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
              N+SRA E+F E++  G     S    ++EA+   G   +A  +       G  P ++
Sbjct: 320 SAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPTAA 379

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR-------------FFLEALETFSSS 344
           TY++L   Y +    + V++L + M +  + P+               FF E +E F   
Sbjct: 380 TYRVLLDLYGRQGRFDGVRQLFREM-RTAVPPDTATYNVLFRVFGDGGFFKEVVELFHDM 438

Query: 345 L 345
           L
Sbjct: 439 L 439



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/244 (20%), Positives = 98/244 (40%), Gaps = 5/244 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  +G       A   F+ M   G  P    YNAL  A+     +     +A   F
Sbjct: 485 YTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYA----RGGLFQEAEAIF 540

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M      + +  +++ L+ A  Q   +D     + E+ +S   PD  +  GV++AY  
Sbjct: 541 SRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCI 600

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G+I E +     ++S+   P +I + +++  Y +   +     + + +  ++   T   
Sbjct: 601 AGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQV 660

Query: 194 FNSMIIN-YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
             S+I   Y  +      EYV +  T      SF  +  ++ +  +     RA  + D+ 
Sbjct: 661 IASLIKGEYDDSSNWQMVEYVLENSTMEGCDYSFRFFNALLGVLWWFGQKGRAARVLDQA 720

Query: 253 SKLG 256
            K G
Sbjct: 721 VKFG 724



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 84/209 (40%), Gaps = 34/209 (16%)

Query: 148 KSNQCKPDIITFNLLIDSYGKRQA--FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
           + + C+PD     ++I   G++     DK  +VF  L    E  T  ++ S+I  Y +  
Sbjct: 153 RQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDL--PAESRTALSYTSLIAAYARNA 210

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
           L  +A  +  +M A    P+  TY  ++     C   +     FD L  L  +M+     
Sbjct: 211 LHEEARALLDQMKATGVAPTAATYNTVLAA---CARATDPPVPFDMLLGLFAEMR----- 262

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
                               +  +  V PD +TY  L  A    ++ +  + LL  M + 
Sbjct: 263 --------------------HDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEA 302

Query: 326 GIVPNKRFFLEALETFSSSLAGSQSGSAK 354
           G+ P+   +   ++ F+S  AG+ S +A+
Sbjct: 303 GVSPDTVSYRHIVDAFAS--AGNLSRAAE 329


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 155/327 (47%), Gaps = 15/327 (4%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT---AHLHTRDKAKA 65
           AD  I++ +I  + K      A+ LF EM   G RP+   Y++LI+   ++    D ++ 
Sbjct: 258 ADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQL 317

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L+  +         ++  PN+VT+N L+ A  +     +   L+ ++ +  + PDI+TYN
Sbjct: 318 LSDMIE--------KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYN 369

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++ +  +  + + + +   M S  C PD++T+N LI  + K +  +   ++F+ + H 
Sbjct: 370 SLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHR 429

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VS 243
                  T+ ++I           A+ VF++M +    P  +TY   I + G C+N  + 
Sbjct: 430 GLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYS--ILLDGLCNNGKLE 487

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           +A E+FD + K    + +     M+E  C  G   +   LF +    GV P+  TY  + 
Sbjct: 488 KALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMI 547

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
                  + +    LLK+M+++G +PN
Sbjct: 548 SGLCSKRLLQEAYALLKKMKEDGPLPN 574



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 146/323 (45%), Gaps = 9/323 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  DT  ++ LI  +    +   A+ L   M   GC+P+   Y  ++       D   AL
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 245

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
                   KM+   + + ++V +N ++ +  + R+VD    LFKE+    + P++ TY+ 
Sbjct: 246 ----NLLNKMEA-AKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 300

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++      G   +   +LS M   +  P+++TFN LID++ K   F + E+++  ++   
Sbjct: 301 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS 360

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
             P + T+NS++  +       KA+ +F+ M +    P  +TY  +I   G+C +  V  
Sbjct: 361 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIK--GFCKSKRVED 418

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
             E+F E+S  G      T   +++    +G    A  +F+   + GV PD  TY +L  
Sbjct: 419 GTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLD 478

Query: 305 AYTKANMKELVQKLLKRMEQNGI 327
                   E   ++   M+++ I
Sbjct: 479 GLCNNGKLEKALEVFDYMQKSEI 501



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 145/305 (47%), Gaps = 13/305 (4%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CKPNIVT 88
           A+ L  +M   G RPD   +  LI   L   +KA   ++A+    +M  ++R C+PN+VT
Sbjct: 174 AVALVDQMVEMGYRPDTITFTTLIHG-LFLHNKA---SEAVALVDRM--VQRGCQPNLVT 227

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y +++    +  + D    L  ++  + +  D+  +N ++D+  K   + +  ++   M+
Sbjct: 228 YGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEME 287

Query: 149 SNQCKPDIITFNLLID---SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
           +   +P+++T++ LI    SYG+   +    Q+   ++  K  P L TFN++I  + K  
Sbjct: 288 TKGIRPNVVTYSSLISCLCSYGR---WSDASQLLSDMIEKKINPNLVTFNALIDAFVKEG 344

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
              +AE ++  M      P   TY  ++  +   D + +A+++F+ +        V T N
Sbjct: 345 KFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYN 404

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            +++ +C +    +   LF    + G+  D+ TY  L +        +  QK+ K+M  +
Sbjct: 405 TLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD 464

Query: 326 GIVPN 330
           G+ P+
Sbjct: 465 GVPPD 469



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 131/311 (42%), Gaps = 44/311 (14%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKALAKALG 71
           ++ LI    K+G+   A  L+ +M      PD   YN+L+    +H R DKAK +     
Sbjct: 333 FNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQM----- 387

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            F+ M   + C P++VTYN L++   +++ V+    LF+E+    L  D  TY  ++   
Sbjct: 388 -FEFMVSKD-CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 445

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
             +G     + V  +M S+   PDI+T+++L+D        +K  +VF  +  S+ K  +
Sbjct: 446 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI 505

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             + +MI    KA   GK                                V    ++F  
Sbjct: 506 YIYTTMIEGMCKA---GK--------------------------------VDDGWDLFCS 530

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           LS  G    V T N M+   C   L  EA  L +     G  P+S TY  L +A+ +   
Sbjct: 531 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD 590

Query: 312 KELVQKLLKRM 322
           K    +L++ M
Sbjct: 591 KAASAELIREM 601



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 145/355 (40%), Gaps = 46/355 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++KL++ + K  +  + + L  +M+          YN LI         + ALA  LG  
Sbjct: 88  FNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALA-LLGKM 146

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+ G E   P+IVT + LL      + +    AL  ++ E    PD  T+  ++     
Sbjct: 147 MKL-GYE---PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202

Query: 134 NGMIKEMESVLSRMKSNQCKPDIIT----------------------------------- 158
           +    E  +++ RM    C+P+++T                                   
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI---INYGKARLQGKAEYVFQ 215
           FN +IDS  K +  D    +FK +     +P + T++S+I    +YG+      A  +  
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGR---WSDASQLLS 319

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            M   K  P+ +T+  +I  +        A +++D++ K   D  + T N+++  +CM+ 
Sbjct: 320 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHD 379

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              +A  +FE   +    PD  TY  L K + K+   E   +L + M   G+V +
Sbjct: 380 RLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 434



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 116/278 (41%), Gaps = 5/278 (1%)

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L  A+G F  M    R  P+IV +N LL A A+ +  D V +L +++    +   +YTYN
Sbjct: 66  LDDAIGLFGGMVK-SRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 124

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++ + +   I    ++L +M     +P I+T + L++ Y   +       +   ++  
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVS 243
             +P   TF ++I          +A  +  +M      P+ +TY  ++   G C   +  
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN--GLCKRGDTD 242

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  + +++     +  V   N ++++ C      +A  LF+     G+ P+  TY  L 
Sbjct: 243 LALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 302

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
                        +LL  M +  I PN   F   ++ F
Sbjct: 303 SCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 340



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 94/242 (38%)

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y  +LR       +D    LF  + +S   P I  +N ++ A  K      + S+  +M+
Sbjct: 53  YREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQ 112

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
             +    + T+N+LI+ + +R        +   +M    +P++ T +S++  Y   +   
Sbjct: 113 RLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRIS 172

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A  +  +M  M Y P  IT+  +I      +  S A  + D + + G    + T   ++
Sbjct: 173 DAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVV 232

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
              C  G    A  L        +  D   +  +  +  K    +    L K ME  GI 
Sbjct: 233 NGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIR 292

Query: 329 PN 330
           PN
Sbjct: 293 PN 294



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 5/163 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R  + DT  Y+ LI  +   G    A  +F +M + G  PD   Y+ L+    +     
Sbjct: 428 HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 487

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           KAL +   Y QK       K +I  Y  ++    +A  VD    LF  L    + P++ T
Sbjct: 488 KAL-EVFDYMQK----SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVT 542

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
           YN ++       +++E  ++L +MK +   P+  T+N LI ++
Sbjct: 543 YNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAH 585


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 148/318 (46%), Gaps = 6/318 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y++LI  +GK G+   A   F EM+  GCRPD  V N +I    +   KA  L  A
Sbjct: 299 DVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMI----NFLGKAGRLDDA 354

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARN-VDQVNALFKELHESILAPDIYTYNGVM 128
           +  FQ+M G  RC P++VTYN +++A  ++++   +V + F+ + ES ++P  +TY+ ++
Sbjct: 355 MKLFQEM-GTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILI 413

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D + K   +++   +L  M      P    +  LID+ GK + +D   ++F+ L  +   
Sbjct: 414 DGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGS 473

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
            +   +  MI + GKA     A  +F +M  +   P    Y  +++       +  A   
Sbjct: 474 SSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALST 533

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
              + + G    +++ N +L      G P  A  +  N     V PD  +Y  +  A + 
Sbjct: 534 MRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSH 593

Query: 309 ANMKELVQKLLKRMEQNG 326
           A M E   KL++ M   G
Sbjct: 594 AGMFEEAAKLMEEMNTLG 611



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 142/321 (44%), Gaps = 6/321 (1%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T IY+ LI +  K      A+ LF EMR+  CRPD   Y  LI        KA  + +A 
Sbjct: 265 TKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRG----LGKAGRIDEAY 320

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
            +F +M+  E C+P+ V  N ++    +A  +D    LF+E+      P + TYN ++ A
Sbjct: 321 HFFYEMQ-REGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKA 379

Query: 131 -YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +       E+ S   RMK +   P   T+++LID + K    +K   + + +      P
Sbjct: 380 LFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPP 439

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               + S+I   GKA+    A  +FQ++     + S   Y  +I   G    +  A  +F
Sbjct: 440 CPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMF 499

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE++KLG    V   NA++      G+  EA          G  PD ++Y ++     K 
Sbjct: 500 DEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKT 559

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
                  ++L  M+Q+ + P+
Sbjct: 560 GGPHRAMEMLSNMKQSTVRPD 580



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 144/322 (44%), Gaps = 6/322 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  YS LI+   K G+   A  L +EM+ +G +P   +Y  LIT      D    +  A
Sbjct: 229 DTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDD----VHGA 284

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  F++M+  + C+P++ TY  L+R   +A  +D+    F E+      PD    N +++
Sbjct: 285 LSLFEEMRH-QYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMIN 343

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS-YGKRQAFDKMEQVFKSLMHSKEK 188
             GK G + +   +   M + +C P ++T+N +I + +  +    ++   F+ +  S   
Sbjct: 344 FLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGIS 403

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P+  T++ +I  + K     KA  + ++M    + P    Y  +I   G       A E+
Sbjct: 404 PSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACEL 463

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F EL +            M++     G   +A  +F+  + +G  PD   Y  L     +
Sbjct: 464 FQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLAR 523

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
             M +     ++RM+++G +P+
Sbjct: 524 TGMLDEALSTMRRMQEHGCIPD 545



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 137/314 (43%), Gaps = 9/314 (2%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S+++ ++G       A+ +F +++   C+P    YN++I   +H     K        + 
Sbjct: 163 SEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHE----LYN 218

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M     C P+ +TY+ L+ A  +    D    L  E+ E+ + P    Y  ++  + K 
Sbjct: 219 EMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKL 278

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
             +    S+   M+   C+PD+ T+  LI   GK    D+    F  +     +P     
Sbjct: 279 DDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVM 338

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI---FDE 251
           N+MI   GKA     A  +FQ+M  ++  PS +TY  II      ++ SRA E+   F+ 
Sbjct: 339 NNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIK--ALFESKSRASEVPSWFER 396

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G      T + +++ +C      +A +L E     G  P  + Y  L  A  KA  
Sbjct: 397 MKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKR 456

Query: 312 KELVQKLLKRMEQN 325
            +L  +L + +++N
Sbjct: 457 YDLACELFQELKEN 470



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 112/229 (48%), Gaps = 7/229 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI    K  +   AM L  EM   G  P P+ Y +LI A      KAK    A   F
Sbjct: 409 YSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDA----LGKAKRYDLACELF 464

Query: 74  QKMKGMERCKPNIV-TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           Q++K  E C  +    Y ++++   +A  +D    +F E+++   APD+Y YN +M    
Sbjct: 465 QELK--ENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLA 522

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + GM+ E  S + RM+ + C PDI ++N++++   K     +  ++  ++  S  +P + 
Sbjct: 523 RTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVV 582

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++N+++     A +  +A  + ++M  + +    ITY  I+   G  D+
Sbjct: 583 SYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYSSILEAIGKVDH 631



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 122/301 (40%), Gaps = 4/301 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT + + +I  +GK G+   AM LF EM    C P    YN +I A   ++ +A  +   
Sbjct: 334 DTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVP-- 391

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
             +F++MK      P+  TY+IL+    +   +++   L +E+ E    P    Y  ++D
Sbjct: 392 -SWFERMKE-SGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLID 449

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A GK         +   +K N        + ++I   GK    D    +F  +      P
Sbjct: 450 ALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAP 509

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  +N+++    +  +  +A    ++M      P   +Y  I+          RA E+ 
Sbjct: 510 DVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEML 569

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             + +      V + N +L A    G+  EA  L E  + +G   D  TY  + +A  K 
Sbjct: 570 SNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYSSILEAIGKV 629

Query: 310 N 310
           +
Sbjct: 630 D 630



 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 51/250 (20%), Positives = 101/250 (40%), Gaps = 12/250 (4%)

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYT----YNGVMDAYGKNGMIKEMESV 143
           TY  L+R C +   V+Q   ++K + E +  P         + V+   G   M+ +  ++
Sbjct: 125 TYMALIR-CLEV--VEQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAI 181

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP---TFNSMIIN 200
             ++K+ +C+P    +N +I        + K+ +++  +  S E    P   T++++I  
Sbjct: 182 FYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEM--STEGHCFPDTMTYSALISA 239

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
           + K   +  A  +  +M      P+   Y  +IT++   D+V  A  +F+E+        
Sbjct: 240 FCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPD 299

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           V T   ++      G   EA   F      G  PD+     +     KA   +   KL +
Sbjct: 300 VFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQ 359

Query: 321 RMEQNGIVPN 330
            M     +P+
Sbjct: 360 EMGTLRCIPS 369



 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 37/188 (19%), Positives = 74/188 (39%), Gaps = 35/188 (18%)

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN-YGKARLQGKAEYV 213
           D  T+  LI      + + +M ++ + ++ +      PT  S ++   G A++  KA  +
Sbjct: 122 DTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAI 181

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F ++   K  P+   Y  +I M  +     +  E+++E+S               E +C 
Sbjct: 182 FYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMST--------------EGHCF 227

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
                               PD+ TY  L  A+ K   ++   +LL  M++NG+ P  + 
Sbjct: 228 --------------------PDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKI 267

Query: 334 FLEALETF 341
           +   +  F
Sbjct: 268 YTMLITLF 275


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 163/346 (47%), Gaps = 13/346 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR-- 60
           ++R    +T  Y+ LIA + + G    A     +M + G  PD   Y ALI     +R  
Sbjct: 249 RERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRS 308

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           ++AKAL        +M   E  KPN+V Y  L+    +  N D+   + KE+  + + P+
Sbjct: 309 NEAKAL------LDEMSCAE-LKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPN 361

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TY+ ++    K G +     +L +M  +  +PD IT+NL+I+ + +  +     ++  
Sbjct: 362 KITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLS 421

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC- 239
            + ++   P + T++ MI    ++    KA  + ++MT     P+   Y  +I+  GYC 
Sbjct: 422 EMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLIS--GYCR 479

Query: 240 -DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             NVS A EIFD+++K+     +   N+++      G   E+   F      G+ P+  T
Sbjct: 480 EGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFT 539

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           Y  L   Y K    E  ++L++RM   G+ PN   +++ LE++  S
Sbjct: 540 YSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKS 585



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 151/336 (44%), Gaps = 16/336 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I  + + G+   A  L  EM   G +P+  VY  LI+ +   R+   +LA  +  F
Sbjct: 435 YSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGY--CREGNVSLACEI--F 490

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM  +    P++  YN L+   ++   V++    F ++ E  L P+ +TY+G++  Y K
Sbjct: 491 DKMTKV-NVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLK 549

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           NG ++  E ++ RM     KP+ + +  L++SY K    +K+   FKS++          
Sbjct: 550 NGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRI 609

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVSRARE--I 248
           +  +I N   +   G  E  F+ ++ ++     P    Y  +I+  G C    R +   I
Sbjct: 610 YGILIHNLSSS---GNMEAAFRVLSGIEKNGSVPDVHVYSSLIS--GLCKTADREKAFGI 664

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            DE+SK G D  +   NA+++  C +G  + A  +F +    G+ P+  TY  L     K
Sbjct: 665 LDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCK 724

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
                    L   M   GI P+  F    L T  SS
Sbjct: 725 VGDISNAFYLYNEMLATGITPDA-FVYSVLTTGCSS 759



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 141/342 (41%), Gaps = 38/342 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  IY  LI  +   G    A  + S +  +G  PD  VY++LI+    T D+     KA
Sbjct: 606 DNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADR----EKA 661

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            G   +M  KG++   PNIV YN L+    ++ ++     +F  +    L P+  TY  +
Sbjct: 662 FGILDEMSKKGVD---PNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSL 718

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK-SLMHSK 186
           +D   K G I     + + M +    PD   +++L  + G   A D  + +F    M  +
Sbjct: 719 IDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVL--TTGCSSAGDLEQAMFLIEEMFLR 776

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
              ++ +FN+++  + K     +   +   +      P+ +T E II+       +S   
Sbjct: 777 GHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVH 836

Query: 247 EIFDEL------------SKLGKDM------KVSTLNAMLEAYCMNGLPTEA----DLLF 284
            IF EL            S L  DM       +  ++ M+  +C  G   +A    D++ 
Sbjct: 837 TIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIV 896

Query: 285 ENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
             S  MG    SS   ++     K  + E +  LLK M++ G
Sbjct: 897 AKSAPMGC---SSYLAIVDNLCRKGKLSEALN-LLKEMDKRG 934



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 105/243 (43%), Gaps = 10/243 (4%)

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           +   ++AY K       + VL  M+   C  + +T+N+LI    +  A ++     K + 
Sbjct: 225 HGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME 284

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                P   T+ ++I    K+R   +A+ +  +M+  +  P+ + Y  +I  +    N  
Sbjct: 285 DYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNAD 344

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A ++  E+   G      T + ++   C  G    A LL +        PD+ TY L+ 
Sbjct: 345 EAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLII 404

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG-SQSGSAK--TDLTRS 360
           + + + + K+   +LL  ME  GI PN       + T+S  + G  QSG  +  +DL   
Sbjct: 405 EGHFRHHSKKDAFRLLSEMENAGISPN-------VYTYSIMIHGLCQSGEPEKASDLLEE 457

Query: 361 LST 363
           ++T
Sbjct: 458 MTT 460


>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
          Length = 854

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 163/333 (48%), Gaps = 7/333 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + ++      + L S++  +G +PD  ++NA+I A      ++  L +A+  F
Sbjct: 380 YTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINAS----SESGNLDQAMKIF 435

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE-LHESILAPDIYTYNGVMDAYG 132
           +KMK    CKP   T+N L++   +   +++ + L    L + +L P+  T N ++ A+ 
Sbjct: 436 EKMK-ESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWC 494

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ-VFKSLMHSKEKPTL 191
               I+E  +++ +M+S   KPD++TFN L  +Y +  +    E  +   ++H+K KP +
Sbjct: 495 NQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNV 554

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T  +++  Y +     +A   F +M  +   P+   +  +I  +   +++    E+ D 
Sbjct: 555 RTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDL 614

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G    V T + ++ A+   G     + ++ +    G+ PD   + +L K Y +A  
Sbjct: 615 MEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGE 674

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            E  +++L +M + G+ PN   + + +  + S+
Sbjct: 675 PEKAEQILNQMRKFGVRPNVVIYTQIISGWCSA 707



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 143/326 (43%), Gaps = 12/326 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT +++ +I    + G    AM +F +M+ SGC+P  S +N LI  +     K   L ++
Sbjct: 411 DTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGY----GKIGKLEES 466

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                 M   E  +PN  T NIL++A    R +++   +  ++    + PD+ T+N +  
Sbjct: 467 SRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAK 526

Query: 130 AYGKNGMIKEMES-VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE- 187
           AY + G     E  ++ RM  N+ KP++ T   +++ Y +     KME+  +     KE 
Sbjct: 527 AYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEE---GKMEEALRFFYRMKEL 583

Query: 188 --KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P L  FNS+I  +           V   M      P  +T+  ++  +    ++ R 
Sbjct: 584 GVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRC 643

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            EI+ ++ + G D  +   + + + Y   G P +A+ +       GV P+   Y  +   
Sbjct: 644 EEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISG 703

Query: 306 YTKAN-MKELVQKLLKRMEQNGIVPN 330
           +  A  MK+ +Q   K     G+ PN
Sbjct: 704 WCSAGEMKKAMQVYKKMCGIVGLSPN 729



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 120/266 (45%), Gaps = 2/266 (0%)

Query: 80  ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
           E  KP+++TY  L+ A  + ++   + +L  ++ ++ L PD   +N +++A  ++G + +
Sbjct: 371 EGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQ 430

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMI 198
              +  +MK + CKP   TFN LI  YGK    ++  ++   ++  +  +P   T N ++
Sbjct: 431 AMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILV 490

Query: 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE-IFDELSKLGK 257
             +   R   +A  +  KM +    P  +T+  +   Y    +   A + I   +     
Sbjct: 491 QAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKV 550

Query: 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
              V T   ++  YC  G   EA   F     +GV P+   +  L K +   N  + V +
Sbjct: 551 KPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGE 610

Query: 318 LLKRMEQNGIVPNKRFFLEALETFSS 343
           ++  ME+ G+ P+   F   +  +SS
Sbjct: 611 VVDLMEEFGVKPDVVTFSTLMNAWSS 636



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 6/242 (2%)

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           + +++F  L E    P + TY  ++ A  +      + S++S+++ N  KPD I FN +I
Sbjct: 360 EAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAII 419

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKY 222
           ++  +    D+  ++F+ +  S  KPT  TFN++I  YGK  +L+  +  +   +     
Sbjct: 420 NASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEML 479

Query: 223 TPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTE 279
            P+  T  C I +  +C+   +  A  I  ++   G    V T N + +AY   G   T 
Sbjct: 480 QPNDRT--CNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTA 537

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
            D++     +  V P+  T   +   Y +    E   +   RM++ G+ PN   F   ++
Sbjct: 538 EDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIK 597

Query: 340 TF 341
            F
Sbjct: 598 GF 599



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/329 (18%), Positives = 142/329 (43%), Gaps = 40/329 (12%)

Query: 36  EMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95
           +M++ G +PD   +N L  A  + R  +   A+ +   + +    + KPN+ T   ++  
Sbjct: 508 KMQSYGVKPDVVTFNTL--AKAYARIGSTCTAEDMIIPRMLH--NKVKPNVRTCGTIVNG 563

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
             +   +++    F  + E  + P+++ +N ++  +     +  +  V+  M+    KPD
Sbjct: 564 YCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPD 623

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
           ++TF+ L++++       + E+++  ++     P +  F+ +   Y +A    KAE +  
Sbjct: 624 VVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILN 683

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
           +M      P+ + Y  II+ +     + +A +++ ++  +                    
Sbjct: 684 QMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGI-------------------- 723

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335
                         +G++P+ +TY+ L   + +A      ++LLK ME   +VP ++  +
Sbjct: 724 --------------VGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRK-TM 768

Query: 336 EALETFSSSLAGSQSGSAKTDLTRSLSTA 364
           + +     S+  S S  A T L  S ST+
Sbjct: 769 QLIADGWKSIGVSNSNDANT-LGSSFSTS 796



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 96/217 (44%), Gaps = 6/217 (2%)

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D+ +   +M+   + G  +E  S+ + +     KP +IT+  L+ +  +++ F  +  + 
Sbjct: 341 DVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLI 400

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             +  +  KP    FN++I    ++    +A  +F+KM      P+  T+  +I  YG  
Sbjct: 401 SKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKI 460

Query: 240 DNVSRAREIFDELSKLGKDM---KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
             +  +  + D +  L  +M      T N +++A+C      EA  +     + GV PD 
Sbjct: 461 GKLEESSRLLDMM--LRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDV 518

Query: 297 STYKLLYKAYTKANMKELVQK-LLKRMEQNGIVPNKR 332
            T+  L KAY +       +  ++ RM  N + PN R
Sbjct: 519 VTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVR 555



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   +S L     + G+   A  + ++MR  G RP+  +Y  +I+        A  + KA
Sbjct: 658 DIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWC----SAGEMKKA 713

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +  ++KM G+    PN+ TY  L+    +A+   +   L K++    + P   T   + D
Sbjct: 714 MQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLIAD 773

Query: 130 AYGKNGM 136
            +   G+
Sbjct: 774 GWKSIGV 780


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 151/328 (46%), Gaps = 9/328 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D  IY+ L+    + G    A+ +  EM   GC  D   YN ++        K K L 
Sbjct: 290 VPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLC----KEKMLT 345

Query: 68  KALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            A   F +M  +ER   P+  T+  L+    Q  N+ +  +LF  + +  + PDI  YN 
Sbjct: 346 DADKLFDEM--VERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNT 403

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++D + K G +++   +   M S +  P+ IT+ +LI++Y       +  +++  ++   
Sbjct: 404 LIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKG 463

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            KPTL T N++I  Y ++    KA+    +M A    P  I+Y  +I  +   DN+ +A 
Sbjct: 464 IKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAF 523

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
              +++ K G    + T N ++  +C  G   EA+L+       G+ PD STY  L   +
Sbjct: 524 LWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGH 583

Query: 307 -TKANMKELVQKLLKRMEQNGIVPNKRF 333
            T+ N+ E   +    M Q G  P+  F
Sbjct: 584 VTQDNLNEAF-RFHDEMLQRGFAPDDVF 610



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 143/321 (44%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  Y+ L+    ++     A  +F EM   G  PD   +++LI      R     L +A
Sbjct: 222 DTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRH----LDQA 277

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L YF+ MK      P+ V Y +L+    +  N+ +   +  E+ E     D+  YN +++
Sbjct: 278 LVYFRDMKKFGLV-PDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILN 336

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K  M+ + + +   M      PD  TF  LI  + +     K   +F ++     KP
Sbjct: 337 GLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKP 396

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  +N++I  + K     KA  ++  M + K  P+ ITY  +I  Y    +VS A  ++
Sbjct: 397 DIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLW 456

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D + + G    + T N +++ YC +G  ++AD         GV PD  +Y  L   + + 
Sbjct: 457 DVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVRE 516

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
           +  +     + +ME+ G++P+
Sbjct: 517 DNMDKAFLWINKMEKEGLLPD 537



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 140/330 (42%), Gaps = 9/330 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + + Y+      + L+  + K     LA  +  E+  SG   +    N ++ A      K
Sbjct: 75  RSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALC----K 130

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
                    +  +M+G      ++VTYN L+ A  +   +++   +   + +  L P ++
Sbjct: 131 DGKFDDVKSFLSEMEG-NGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLF 189

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN +++   K G     + +L  M +    PD  T+N L+    +R  F + +++F  +
Sbjct: 190 TYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEM 249

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--D 240
           +     P L +F+S+I  + + R   +A   F+ M      P  + Y   + M+GYC   
Sbjct: 250 LRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYT--VLMHGYCRNG 307

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           N+  A +I DE+ + G  + V   N +L   C   + T+AD LF+     G  PD  T+ 
Sbjct: 308 NMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFT 367

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            L   + +         L   M Q  I P+
Sbjct: 368 TLIHGHCQDGNMTKALSLFGTMTQRNIKPD 397



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 107/253 (42%), Gaps = 5/253 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R  + D   ++ LI    + G    A+ LF  M     +PD   YN LI       +  
Sbjct: 356 ERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEME 415

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           KA     G   +     +  PN +TY IL+ A     +V +   L+  + E  + P + T
Sbjct: 416 KASELWDGMISR-----KIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVT 470

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
            N V+  Y ++G   + +  L RM +    PD I++N LI+ + +    DK       + 
Sbjct: 471 CNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKME 530

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                P + T+N ++  + +     +AE V +KM      P   TY  +I  +   DN++
Sbjct: 531 KEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLN 590

Query: 244 RAREIFDELSKLG 256
            A    DE+ + G
Sbjct: 591 EAFRFHDEMLQRG 603



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/255 (21%), Positives = 107/255 (41%), Gaps = 4/255 (1%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C  N + +++L+R   QAR + +    F+ L        I   N ++    K   ++   
Sbjct: 44  CGTNNLVFDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAW 103

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
            V   +  +  + ++ T N+++++  K   FD ++     +  +     + T+N++I  Y
Sbjct: 104 EVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAY 163

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDM 259
            +  L  +A  +   M      PS  TY  II   G C     +RA+ I  E+  +G   
Sbjct: 164 CREGLLEEAFEIMNSMADKGLKPSLFTYNAIIN--GLCKKGRYARAKGILIEMLNIGLSP 221

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
             +T N +L   C     +EA  +F      GV PD  ++  L   +++    +      
Sbjct: 222 DTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYF 281

Query: 320 KRMEQNGIVPNKRFF 334
           + M++ G+VP+   +
Sbjct: 282 RDMKKFGLVPDNVIY 296


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 136/326 (41%), Gaps = 14/326 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + K       M LF E+   G  PD   YN LI +      KA  L +A    
Sbjct: 40  YNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLC----KAGDLEEARRLH 95

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL--HESILAPDIYTYNGVMDAY 131
             M     C PN+VTY++L+    +   +D+   L +E+      + P+I TYN  +D  
Sbjct: 96  GDMSS-RGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGL 154

Query: 132 GKNGMIKEMESVLSRMKSNQCK--PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            K  M  E   ++  ++    +  PD +TF+ LID   K    D+   VF  ++     P
Sbjct: 155 CKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVP 214

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+N+++    KA    +A  + + M     TP  ITY  ++  +     V  A E+ 
Sbjct: 215 NVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELL 274

Query: 250 DELSKLGKDMKV-----STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
             ++  G    V      T N ++   C  G   +A  LFE      + PD  T+  L  
Sbjct: 275 HGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALID 334

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
              KA   E  + +L  M   G+ PN
Sbjct: 335 GLCKAGQVEAARDILDLMGNLGVPPN 360



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 142/297 (47%), Gaps = 8/297 (2%)

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
           L +  +A   A+AL  F+     +   P IVTYN ++    ++ ++     LF+EL E  
Sbjct: 8   LQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERG 67

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
             PD+ TYN ++D+  K G ++E   +   M S  C P+++T+++LI+   K    D+  
Sbjct: 68  HHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEAR 127

Query: 177 QVFKSLMHSKEKPTLP---TFNSMIINYGKARLQGKAEYVFQKM--TAMKYTPSFITYEC 231
           ++ +  M  K    LP   T+NS +    K  +  +A  + + +   +++ +P  +T+  
Sbjct: 128 ELIQE-MTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFST 186

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           +I     C  +  A  +FD++   G    V T NA++   C       A  + E+  + G
Sbjct: 187 LIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKG 246

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 348
           VTPD  TY +L  A+ KA+  +   +LL  M   G  PN    +    TF+  +AG+
Sbjct: 247 VTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPN--VLVPDKVTFNILIAGA 301



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 151/346 (43%), Gaps = 18/346 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCR--PDPSVYNALITAHLHTRDKAKALAKALG 71
           Y+  +  + K+  T  A  L   +R+   R  PD   ++ LI        K   + +A  
Sbjct: 147 YNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLC----KCGQIDEACS 202

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            F  M       PN++TYN L+    +A  +++ +A+ + + +  + PD+ TY+ ++DA+
Sbjct: 203 VFDDMIAGGY-VPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAF 261

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDI-----ITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
            K   + E   +L  M S  C P++     +TFN+LI    K   F++   +F+ ++   
Sbjct: 262 CKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKN 321

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
            +P + TF ++I    KA     A  +   M  +   P+ +TY  ++  +G C +  +  
Sbjct: 322 LQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALV--HGLCKSGRIEE 379

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A +  +E+   G      T  +++ A C      +A  L     + G  PD+ TY +L  
Sbjct: 380 ACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVD 439

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF--SSSLAGS 348
              K+   E    +L+ M   G  P+   F         S +LAG+
Sbjct: 440 GLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGT 485



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 143/328 (43%), Gaps = 14/328 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  +S LI  + K GQ   A  +F +M   G  P+   YNAL+        KA  + +A
Sbjct: 180 DTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLC----KADKMERA 235

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE-----SILAPDIY 122
               + M  KG+    P+++TY++L+ A  +A  VD+   L   +       ++L PD  
Sbjct: 236 HAMIESMVDKGV---TPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKV 292

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           T+N ++    K G  ++  ++   M +   +PD++TF  LID   K    +    +   +
Sbjct: 293 TFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLM 352

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
            +    P + T+N+++    K+    +A    ++M +    P  ITY  ++         
Sbjct: 353 GNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRT 412

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A ++  EL   G D    T N +++    +G   +A  + E     G  PDS T+   
Sbjct: 413 DDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAAC 472

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +    ++       +LL+ +   G++P+
Sbjct: 473 FSGLHRSGNLAGTMELLRVVLAKGMLPD 500



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 139/327 (42%), Gaps = 20/327 (6%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y+ +   Y+ L+  + K  +   A  +   M + G  PD   Y+ L+ A      KA  +
Sbjct: 212 YVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFC----KASRV 267

Query: 67  AKALGYFQKMKGMERCKPNI-----VTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            +AL     M     C PN+     VT+NIL+    +A N +Q +ALF+E+    L PD+
Sbjct: 268 DEALELLHGMAS-RGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDV 326

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            T+  ++D   K G ++    +L  M +    P+++T+N L+    K    ++  Q  + 
Sbjct: 327 MTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEE 386

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++ S   P   T+ S++    +A     A  +  ++ +  + P  +TY  ++        
Sbjct: 387 MVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGK 446

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL-----LFENSHNMGVTPDS 296
             +A  + +E+   G      T      A C +GL    +L     L       G+ PD+
Sbjct: 447 TEQAITVLEEMVGKGHQPDSFTF-----AACFSGLHRSGNLAGTMELLRVVLAKGMLPDA 501

Query: 297 STYKLLYKAYTKANMKELVQKLLKRME 323
           +T   +     ++   + V+ ++K  E
Sbjct: 502 TTCSSILDWVCRSGKLDDVKAMIKEFE 528


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 162/343 (47%), Gaps = 13/343 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR-- 60
           ++R    +T  Y+ LIA + + G    A     +M + G  PD   Y ALI     +R  
Sbjct: 271 RERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRS 330

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           ++AKAL        +M   E  KPN+V Y  L+    +  N D+   + KE+  + + P+
Sbjct: 331 NEAKAL------LDEMSCAE-LKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPN 383

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TY+ ++    K G +     +L +M  +  +PD IT+NL+I+ + +  +     ++  
Sbjct: 384 KITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLS 443

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC- 239
            + ++   P + T++ MI    ++    KA  + ++MT     P+   Y  +I+  GYC 
Sbjct: 444 EMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLIS--GYCR 501

Query: 240 -DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             NVS A EIFD+++K+     +   N+++      G   E+   F      G+ P+  T
Sbjct: 502 EGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFT 561

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           Y  L   Y K    E  ++L++RM   G+ PN   +++ LE++
Sbjct: 562 YSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESY 604



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 151/336 (44%), Gaps = 16/336 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I  + + G+   A  L  EM   G +P+  VY  LI+ +   R+   +LA  +  F
Sbjct: 457 YSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGY--CREGNVSLACEI--F 512

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM  +    P++  YN L+   ++   V++    F ++ E  L P+ +TY+G++  Y K
Sbjct: 513 DKMTKVN-VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLK 571

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           NG ++  E ++ RM     KP+ + +  L++SY K    +K+   FKS++          
Sbjct: 572 NGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRI 631

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVSRARE--I 248
           +  +I N   +   G  E  F+ ++ ++     P    Y  +I+  G C    R +   I
Sbjct: 632 YGILIHNLSSS---GNMEAAFRVLSGIEKNGSVPDVHVYSSLIS--GLCKTADREKAFGI 686

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            DE+SK G D  +   NA+++  C +G  + A  +F +    G+ P+  TY  L     K
Sbjct: 687 LDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCK 746

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
                    L   M   GI P+  F    L T  SS
Sbjct: 747 VGDISNAFYLYNEMLATGITPDA-FVYSVLTTGCSS 781



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 140/304 (46%), Gaps = 12/304 (3%)

Query: 31  MWLFSE-MRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALGYFQKMKGMER-CKPNI 86
           +W   E M  +G  PD   Y+ LI A+   R  D AK +        +M+  ER C  N 
Sbjct: 228 LWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKV------LVEMR--ERGCGLNT 279

Query: 87  VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 146
           VTYN+L+    ++  V++     K++ +  L PD +TY  +++   K+    E +++L  
Sbjct: 280 VTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDE 339

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           M   + KP+++ +  LID + +    D+  ++ K ++ +  +P   T+++++    K   
Sbjct: 340 MSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQ 399

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
             +A  + ++M    + P  ITY  II  +    +   A  +  E+   G    V T + 
Sbjct: 400 MDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSI 459

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           M+   C +G P +A  L E     G+ P++  Y  L   Y +     L  ++  +M +  
Sbjct: 460 MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVN 519

Query: 327 IVPN 330
           ++P+
Sbjct: 520 VLPD 523



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 149/360 (41%), Gaps = 38/360 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  IY  LI  +   G    A  + S +  +G  PD  VY++LI+    T D+     KA
Sbjct: 628 DNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADR----EKA 683

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            G   +M  KG++   PNIV YN L+    ++ ++     +F  +    L P+  TY  +
Sbjct: 684 FGILDEMSKKGVD---PNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSL 740

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF-KSLMHSK 186
           +D   K G I     + + M +    PD   +++L  + G   A D  + +F    M  +
Sbjct: 741 IDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVL--TTGCSSAGDLEQAMFLIEEMFLR 798

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
              ++ +FN+++  + K     +   +   +      P+ +T E II+       +S   
Sbjct: 799 GHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVH 858

Query: 247 EIFDEL------------SKLGKDM------KVSTLNAMLEAYCMNGLPTEA----DLLF 284
            IF EL            S L  DM       +  ++ M+  +C  G   +A    D++ 
Sbjct: 859 TIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIV 918

Query: 285 ENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             S  MG    SS   ++     K  + E +  LLK M++ GI P++   L  L    +S
Sbjct: 919 AKSAPMGC---SSYLAIVDNLCRKGKLSEALN-LLKEMDKRGICPSENQCLILLTNLHTS 974



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 72/184 (39%)

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
             ++L+D+Y K        +V   +      P++   N+++ +  +A        V + M
Sbjct: 176 VLDVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFM 235

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
                +P   TY  +I  Y        A+++  E+ + G  +   T N ++   C +G  
Sbjct: 236 VGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAV 295

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEA 337
            EA    ++  + G+ PD  TY  L     K+      + LL  M    + PN   +   
Sbjct: 296 EEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANL 355

Query: 338 LETF 341
           ++ F
Sbjct: 356 IDGF 359



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 117/310 (37%), Gaps = 80/310 (25%)

Query: 127 VMDAYGKNGMIKEMESVLSRMK------SNQC---------------------------- 152
           ++D Y K+G +++   V+  M+      S +C                            
Sbjct: 180 LVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAG 239

Query: 153 -KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII------------ 199
             PD+ T++ LI++Y K + FD  ++V   +          T+N +I             
Sbjct: 240 ISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAF 299

Query: 200 -------NYG----------------KARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
                  +YG                K+R   +A+ +  +M+  +  P+ + Y  +I  +
Sbjct: 300 GFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGF 359

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
               N   A ++  E+   G      T + ++   C  G    A LL +        PD+
Sbjct: 360 MREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDT 419

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG-SQSGSAK- 354
            TY L+ + + + + K+   +LL  ME  GI PN       + T+S  + G  QSG  + 
Sbjct: 420 ITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPN-------VYTYSIMIHGLCQSGEPEK 472

Query: 355 -TDLTRSLST 363
            +DL   ++T
Sbjct: 473 ASDLLEEMTT 482


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 155/341 (45%), Gaps = 9/341 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D   Y+ +I  + K  +   A   F E+   G RP+   Y AL+    ++   + A 
Sbjct: 186 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA- 244

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A+ L    K    ++  PN++TY+ LL A  +   V +   LF+E+    + PDI TY+ 
Sbjct: 245 ARLLSDMIK----KKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSS 300

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++    +  I E   +   M S  C  D++++N LI+ + K +  +   ++F+ +    
Sbjct: 301 LINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG 360

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
                 T+N++I  + +A    KA+  F +M     +P   TY   I + G CDN  + +
Sbjct: 361 LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN--ILLGGLCDNGELEK 418

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  IF+++ K   D+ + T   ++   C  G   EA  LF +    G+ PD  TY  +  
Sbjct: 419 ALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMS 478

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 345
                 +   V+ L  +M+Q G++ N     +   T S+ L
Sbjct: 479 GLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAEL 519



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 148/326 (45%), Gaps = 9/326 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D      L+    ++ +   A+ L  +M   G +PD   YNA+I +   T    K +
Sbjct: 151 YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKT----KRV 206

Query: 67  AKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
             A  +F+++  KG+   +PN+VTY  L+     +        L  ++ +  + P++ TY
Sbjct: 207 NDAFDFFKEIERKGI---RPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITY 263

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           + ++DA+ KNG + E + +   M      PDI+T++ LI+        D+  Q+F  ++ 
Sbjct: 264 SALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVS 323

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
                 + ++N++I  + KA+       +F++M+      + +TY  +I  +    +V +
Sbjct: 324 KGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDK 383

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A+E F ++   G    + T N +L   C NG   +A ++FE+     +  D  TY  + +
Sbjct: 384 AQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIR 443

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
              K    E    L   +   G+ P+
Sbjct: 444 GMCKTGKVEEAWSLFCSLSLKGLKPD 469



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 144/303 (47%), Gaps = 9/303 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSV--YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 87
           A+ LFS+M  S  RP PS+  +N L++A +    K   +  +LG   ++ G+   + ++ 
Sbjct: 69  AIDLFSDMVKS--RPFPSIVDFNRLLSAIVKL--KKYDVVISLGKKMEVLGI---RNDLY 121

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           T+NI++        V    ++  ++ +    PD  T   +++ + +   + +  S++ +M
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
                KPDI+ +N +IDS  K +  +     FK +     +P + T+ +++     +   
Sbjct: 182 VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRW 241

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
             A  +   M   K TP+ ITY  ++  +     V  A+E+F+E+ ++  D  + T +++
Sbjct: 242 SDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSL 301

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +   C++    EA+ +F+   + G   D  +Y  L   + KA   E   KL + M Q G+
Sbjct: 302 INGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGL 361

Query: 328 VPN 330
           V N
Sbjct: 362 VSN 364



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 5/145 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR  +++T  Y+ LI    + G    A   FS+M   G  PD   YN L+       +  
Sbjct: 358 QRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGE-- 415

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L KAL  F+ M+  E    +IVTY  ++R   +   V++  +LF  L    L PDI T
Sbjct: 416 --LEKALVIFEDMQKREM-DLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVT 472

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMK 148
           Y  +M      G++ E+E++ ++MK
Sbjct: 473 YTTMMSGLCTKGLLHEVEALYTKMK 497



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 4/190 (2%)

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P I+ FN L+ +  K + +D +  + K +     +  L TFN +I  +        A  +
Sbjct: 83  PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142

Query: 214 FQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
             KM  + Y P  +T   ++   G+C  + VS A  + D++ ++G    +   NA++++ 
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVN--GFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSL 200

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           C      +A   F+     G+ P+  TY  L      ++      +LL  M +  I PN 
Sbjct: 201 CKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNV 260

Query: 332 RFFLEALETF 341
             +   L+ F
Sbjct: 261 ITYSALLDAF 270



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 7/186 (3%)

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
            +F  ++ S+  P++  FN ++    K +       + +KM  +       T+  +I  +
Sbjct: 71  DLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCF 130

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
             C  VS A  I  ++ KLG +    T+ +++  +C     ++A  L +    +G  PD 
Sbjct: 131 CCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDI 190

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTD 356
             Y  +  +  K           K +E+ GI PN       + T+++ + G  + S  +D
Sbjct: 191 VAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPN-------VVTYTALVNGLCNSSRWSD 243

Query: 357 LTRSLS 362
             R LS
Sbjct: 244 AARLLS 249


>gi|298711148|emb|CBJ32373.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 962

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 146/332 (43%), Gaps = 11/332 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQK+     +   YS ++  +   GQ + A+    EMR  G   DP VY A I A     
Sbjct: 438 MQKEHGVEPNRFCYSAVVKALANGGQWKRALETLDEMRECGLSADPVVYTAAIGAC---- 493

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVT----YNILLRACAQARNVDQVNALFKELHESI 116
           +K     KAL    K+      KP + +    YN  + A  +A+ ++ +  L   +  S 
Sbjct: 494 EKFGQWEKALDTLSKLVSE---KPPMRSLMWGYNAAISALGKAKQMEGIKDLVATMKASG 550

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           L PD YTY  +M A G +G  +E  S+L  M+    +P+ + +N LI S  K +  +K +
Sbjct: 551 LKPDEYTYAAMMRASGIDGSWEESWSMLVEMEQAGVRPNRVVYNTLIASVLKGEQMEKAD 610

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
            +   +      P + T+ +++    +     +AE +  +M +    P+  T   ++ +Y
Sbjct: 611 DILNRMREGGVPPDVTTYTTIMSGCKRESDWRRAEALLSEMESFGVKPNSRTLTAVLKVY 670

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
           G    V RA  +F++    G  M V   N ++        P     LF    + GV PDS
Sbjct: 671 GDAGEVERALALFEQYDASGMVMDVICFNTLMGPVLKKDDPETVLELFSRMESRGVEPDS 730

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
            T  L+ +A  +A   E    L+++M + G V
Sbjct: 731 LTMSLVLRAAEQAGAAEWAWLLMEKMREEGGV 762



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 126/322 (39%), Gaps = 12/322 (3%)

Query: 29  LAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88
            A+ L  EM+  G  PD   Y +L++A L  R  A A    L  F+ +      KPN +T
Sbjct: 358 FALGLMEEMKREGVEPDIITYGSLMSA-LSPRGLAGA-DIVLELFETL-AKSGLKPNSIT 414

Query: 89  YNILLRACAQARNVDQVNALFKELH-ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           Y   +RA     + ++   +   +  E  + P+ + Y+ V+ A    G  K     L  M
Sbjct: 415 YVSAIRAYGDKGDWERAEQMLVGMQKEHGVEPNRFCYSAVVKALANGGQWKRALETLDEM 474

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH-SKEKPTLPT----FNSMIINYG 202
           +      D + +   I   G  + F + E+   +L     EKP + +    +N+ I   G
Sbjct: 475 RECGLSADPVVYTAAI---GACEKFGQWEKALDTLSKLVSEKPPMRSLMWGYNAAISALG 531

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           KA+     + +   M A    P   TY  ++   G   +   +  +  E+ + G      
Sbjct: 532 KAKQMEGIKDLVATMKASGLKPDEYTYAAMMRASGIDGSWEESWSMLVEMEQAGVRPNRV 591

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
             N ++ +        +AD +       GV PD +TY  +     + +     + LL  M
Sbjct: 592 VYNTLIASVLKGEQMEKADDILNRMREGGVPPDVTTYTTIMSGCKRESDWRRAEALLSEM 651

Query: 323 EQNGIVPNKRFFLEALETFSSS 344
           E  G+ PN R     L+ +  +
Sbjct: 652 ESFGVKPNSRTLTAVLKVYGDA 673



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/306 (20%), Positives = 122/306 (39%), Gaps = 47/306 (15%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           L  +MR  G +PD   Y  ++      +  A   A       +++G++        Y+ +
Sbjct: 183 LLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMMRAVLEDAKLELEGLDLS----AVYSAV 238

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +   A   + +  +AL  E+  + +  D YTY   M+A  + G   +  + L RM+ +  
Sbjct: 239 VSGYAVDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAGKWMQAAAFLPRMREDGV 298

Query: 153 KPDIITFNLLIDS---YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
            P+ I +N +I +   +G+           K+  +++E  +     S   N G+     +
Sbjct: 299 PPNTIAYNTVIGACAFFGRPN---------KAWNNNRETSSFLRPTSTRENKGRGLSPAQ 349

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           AE                            D    A  + +E+ + G +  + T  +++ 
Sbjct: 350 AE--------------------------ASDAGDFALGLMEEMKREGVEPDIITYGSLMS 383

Query: 270 AYCMNGLPTEADL---LFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKRMEQN 325
           A    GL   AD+   LFE     G+ P+S TY    +AY  K + +   Q L+   +++
Sbjct: 384 ALSPRGLAG-ADIVLELFETLAKSGLKPNSITYVSAIRAYGDKGDWERAEQMLVGMQKEH 442

Query: 326 GIVPNK 331
           G+ PN+
Sbjct: 443 GVEPNR 448


>gi|225430029|ref|XP_002281569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Vitis vinifera]
          Length = 635

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 143/325 (44%), Gaps = 4/325 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D+  ++ +I    + G  + AM  F +M+ SG +P  S +N LI  +      A    ++
Sbjct: 141 DSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGY----GIAGEPEES 196

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               + M   E  +PN+ TYN+L+RA    +N+ +   +  ++  S L PD  TYN +  
Sbjct: 197 QKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIAT 256

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           AY +NG   + E ++  M+++  +P+  T  ++I  Y K     +  Q    +     +P
Sbjct: 257 AYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQP 316

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            L  FNS+I  +  A  +     V   M      P  IT+  I+  +     + + REIF
Sbjct: 317 NLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIF 376

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D++ K          + + + Y   G P +A+ +       G  P+   +  +   +  A
Sbjct: 377 DDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSA 436

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
              E   K+ ++M + GI PN + F
Sbjct: 437 GRMEYAIKIFEKMCECGIAPNLKTF 461



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 126/264 (47%), Gaps = 3/264 (1%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           KP++VTY  LL A    ++ D ++++  ++ E+ + PD   +N V++A+ ++G ++E   
Sbjct: 104 KPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMK 163

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE--KPTLPTFNSMIIN 200
              +MK +  KP   TFN LI  YG     ++ +++ + LM   E  +P L T+N ++  
Sbjct: 164 YFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLE-LMSQDENVRPNLRTYNVLVRA 222

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
           +   +   KA  V  KM A    P  +TY  I T Y      S+A  I  E+        
Sbjct: 223 WCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPN 282

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
             T   ++  YC  G   EA        ++G+ P+   +  L K +  A  ++ V ++L 
Sbjct: 283 ERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLT 342

Query: 321 RMEQNGIVPNKRFFLEALETFSSS 344
            ME+ G+ P+   F   +  +S++
Sbjct: 343 LMEEFGVKPDVITFSTIMNAWSAA 366



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 135/290 (46%), Gaps = 11/290 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +     + G+   A  +  EM+NS  +P+      +I  +     K   + +A
Sbjct: 247 DAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYC----KEGKIKEA 302

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L +  +MK +   +PN+V +N L++    A + D VN +   + E  + PD+ T++ +M+
Sbjct: 303 LQFVYRMKDL-GLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMN 361

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A+   G + +   +   M   + +PD   +++L   Y +    +K E++  +++ S   P
Sbjct: 362 AWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHP 421

Query: 190 TLPTFNSMIINYGKARLQGKAEY---VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +  F ++I  +  A   G+ EY   +F+KM      P+  T+E +I  YG      ++ 
Sbjct: 422 NVVIFTTIINGWCSA---GRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSE 478

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
           E+   + +     + +TL  + EA+   GL  EA+ +     N  +T ++
Sbjct: 479 EVLQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVKNEEMTHET 528



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 112/240 (46%), Gaps = 3/240 (1%)

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +V ++   + E    P + TY  ++ A         + S++S+++ N  +PD I FN +I
Sbjct: 90  EVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVI 149

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           +++ +     +  + F  +  S  KPT  TFN++I  YG A    +++ + + M+  +  
Sbjct: 150 NAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENV 209

Query: 224 -PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
            P+  TY  ++  +    N+ +A  +  ++   G      T N +  AY  NG  ++A+ 
Sbjct: 210 RPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEG 269

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           +     N  V P+  T  ++   Y K   +KE +Q  + RM+  G+ PN   F   ++ F
Sbjct: 270 IILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQ-FVYRMKDLGLQPNLVVFNSLIKGF 328


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 155/341 (45%), Gaps = 9/341 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D   Y+ +I  + K  +   A   F E+   G RP+   Y AL+    ++   + A 
Sbjct: 186 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA- 244

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A+ L    K    ++  PN++TY+ LL A  +   V +   LF+E+    + PDI TY+ 
Sbjct: 245 ARLLSDMIK----KKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSS 300

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++    +  I E   +   M S  C  D++++N LI+ + K +  +   ++F+ +    
Sbjct: 301 LVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG 360

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
                 T+N++I  + +A    KA+  F +M     +P   TY   I + G CDN  + +
Sbjct: 361 LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN--ILLGGLCDNGELEK 418

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  IF+++ K   D+ + T   ++   C  G   EA  LF +    G+ PD  TY  +  
Sbjct: 419 ALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMS 478

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 345
                 +   V+ L  +M+Q G++ N     +   T S+ L
Sbjct: 479 GLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAEL 519



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 148/326 (45%), Gaps = 9/326 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D      L+    ++ +   A+ L  +M   G +PD   YNA+I +   T    K +
Sbjct: 151 YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKT----KRV 206

Query: 67  AKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
             A  +F+++  KG+   +PN+VTY  L+     +        L  ++ +  + P++ TY
Sbjct: 207 NDAFDFFKEIERKGI---RPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITY 263

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           + ++DA+ KNG + E + +   M      PDI+T++ L++        D+  Q+F  ++ 
Sbjct: 264 SALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVS 323

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
                 + ++N++I  + KA+       +F++M+      + +TY  +I  +    +V +
Sbjct: 324 KGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDK 383

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A+E F ++   G    + T N +L   C NG   +A ++FE+     +  D  TY  + +
Sbjct: 384 AQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIR 443

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
              K    E    L   +   G+ P+
Sbjct: 444 GMCKTGKVEEAWSLFCSLSLKGLKPD 469



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 144/303 (47%), Gaps = 9/303 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSV--YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 87
           A+ LFS+M  S  RP PS+  +N L++A +    K   +  +LG   ++ G+   + ++ 
Sbjct: 69  AIDLFSDMVKS--RPFPSIVDFNRLLSAIVKL--KKYDVVISLGKKMEVLGI---RNDLY 121

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           T+NI++        V    ++  ++ +    PD  T   +++ + +   + +  S++ +M
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
                KPDI+ +N +IDS  K +  +     FK +     +P + T+ +++     +   
Sbjct: 182 VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRW 241

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
             A  +   M   K TP+ ITY  ++  +     V  A+E+F+E+ ++  D  + T +++
Sbjct: 242 SDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSL 301

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +   C++    EA+ +F+   + G   D  +Y  L   + KA   E   KL + M Q G+
Sbjct: 302 VNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGL 361

Query: 328 VPN 330
           V N
Sbjct: 362 VSN 364



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 5/145 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR  +++T  Y+ LI    + G    A   FS+M   G  PD   YN L+       +  
Sbjct: 358 QRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGE-- 415

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L KAL  F+ M+  E    +IVTY  ++R   +   V++  +LF  L    L PDI T
Sbjct: 416 --LEKALVIFEDMQKREM-DLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVT 472

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMK 148
           Y  +M      G++ E+E++ ++MK
Sbjct: 473 YTTMMSGLCTKGLLHEVEALYTKMK 497



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 4/190 (2%)

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P I+ FN L+ +  K + +D +  + K +     +  L TFN +I  +        A  +
Sbjct: 83  PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142

Query: 214 FQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
             KM  + Y P  +T   ++   G+C  + VS A  + D++ ++G    +   NA++++ 
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVN--GFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSL 200

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           C      +A   F+     G+ P+  TY  L      ++      +LL  M +  I PN 
Sbjct: 201 CKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNV 260

Query: 332 RFFLEALETF 341
             +   L+ F
Sbjct: 261 ITYSALLDAF 270



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 7/186 (3%)

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
            +F  ++ S+  P++  FN ++    K +       + +KM  +       T+  +I  +
Sbjct: 71  DLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCF 130

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
             C  VS A  I  ++ KLG +    T+ +++  +C     ++A  L +    +G  PD 
Sbjct: 131 CCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDI 190

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTD 356
             Y  +  +  K           K +E+ GI PN       + T+++ + G  + S  +D
Sbjct: 191 VAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPN-------VVTYTALVNGLCNSSRWSD 243

Query: 357 LTRSLS 362
             R LS
Sbjct: 244 AARLLS 249


>gi|255661196|gb|ACU25767.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 426

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 141/288 (48%), Gaps = 9/288 (3%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD  VYN++I        KAK   +
Sbjct: 42  GDLXLYSNLIELSRKLCDYSKAISIFSRLKRSGITPDLVVYNSMINVF----GKAKLFRE 97

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +M+      P+ V+Y  LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 98  ARSLICEMR-TXGVMPDTVSYTTLLTMYVENKKFIEALSVFAEMREIKCLLDLTTCNIMI 156

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  Y   + F +   +F+ +     +
Sbjct: 157 DVYGQLGMAKEADKLFWSMRKLGVEPNVVSYNTLLRVYSDAELFGEAXHLFRLMQRKDIE 216

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSM++ YGK     KA  + Q+M +    P+ ITY  II+++G    + RA  +
Sbjct: 217 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNAITYSTIISIWGKVGKLDRAAML 276

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
           F++L   G ++       M+ AY   GL + A  L    H +  TPD+
Sbjct: 277 FEKLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRLL---HELK-TPDN 320



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 153/327 (46%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   YS LI   GK+G    A+    +M +   R D  +Y+ LI       D 
Sbjct: 1   RERALSPDKYTYSTLITHFGKEGLFDDALSWLQKMEHDRVRGDLXLYSNLIELSRKLCDY 60

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +  +L  E+    + PD  
Sbjct: 61  SKAIS----IFSRLK-RSGITPDLVVYNSMINVFGKAKLFREARSLICEMRTXGVMPDTV 115

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y  ++  Y +N    E  SV + M+  +C  D+ T N++ID YG+     + +++F S+
Sbjct: 116 SYTTLLTMYVENKKFIEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSM 175

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  Y  A L G+A ++F+ M       + +TY  ++ +YG     
Sbjct: 176 RKLGVEPNVVSYNTLLRVYSDAELFGEAXHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEH 235

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LFE   + G+  D   Y+ +
Sbjct: 236 EKANNLIQEMQSRGIEPNAITYSTIISIWGKVGKLDRAAMLFEKLRSSGIEIDQVLYQTM 295

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  ++    +P
Sbjct: 296 IVAYERAGLVSHAKRLLHELKTPDNIP 322



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 110/217 (50%)

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
           E  L+PD YTY+ ++  +GK G+  +  S L +M+ ++ + D+  ++ LI+   K   + 
Sbjct: 2   ERALSPDKYTYSTLITHFGKEGLFDDALSWLQKMEHDRVRGDLXLYSNLIELSRKLCDYS 61

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           K   +F  L  S   P L  +NSMI  +GKA+L  +A  +  +M      P  ++Y  ++
Sbjct: 62  KAISIFSRLKRSGITPDLVVYNSMINVFGKAKLFREARSLICEMRTXGVMPDTVSYTTLL 121

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
           TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF +   +GV 
Sbjct: 122 TMYVENKKFIEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGVE 181

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           P+  +Y  L + Y+ A +      L + M++  I  N
Sbjct: 182 PNVVSYNTLLRVYSDAELFGEAXHLFRLMQRKDIEQN 218



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 147/353 (41%), Gaps = 42/353 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ +I V GK    R A  L  EMR  G  PD   Y  L+T ++      K   +A
Sbjct: 78  DLVVYNSMINVFGKAKLFREARSLICEMRTXGVMPDTVSYTTLLTMYVEN----KKFIEA 133

Query: 70  LGYFQKMK---------------------GMER-------------CKPNIVTYNILLRA 95
           L  F +M+                     GM +              +PN+V+YN LLR 
Sbjct: 134 LSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGVEPNVVSYNTLLRV 193

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
            + A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+S   +P+
Sbjct: 194 YSDAELFGEAXHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPN 253

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
            IT++ +I  +GK    D+   +F+ L  S  +     + +MI+ Y +A L   A+ +  
Sbjct: 254 AITYSTIISIWGKVGKLDRAAMLFEKLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRLLH 313

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
           ++     TP  I  +  I +      +  A  +F +    G+   ++    M++ +    
Sbjct: 314 ELK----TPDNIPRDTAIQILAGSGRMEEATWVFRQAIDAGEVKDITVFEQMIDLFSKYR 369

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             +    +F+    +G  PDS+   L+  AY K +  E    +   M+  G V
Sbjct: 370 KYSNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHDFEKANDVYLEMQDEGCV 422


>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g21222; AltName: Full=SNF1-like protein kinase AtC401
 gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
          Length = 831

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 163/333 (48%), Gaps = 7/333 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + ++      + L S++  +G +PD  ++NA+I A      ++  L +A+  F
Sbjct: 357 YTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINAS----SESGNLDQAMKIF 412

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE-LHESILAPDIYTYNGVMDAYG 132
           +KMK    CKP   T+N L++   +   +++ + L    L + +L P+  T N ++ A+ 
Sbjct: 413 EKMK-ESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWC 471

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ-VFKSLMHSKEKPTL 191
               I+E  +++ +M+S   KPD++TFN L  +Y +  +    E  +   ++H+K KP +
Sbjct: 472 NQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNV 531

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T  +++  Y +     +A   F +M  +   P+   +  +I  +   +++    E+ D 
Sbjct: 532 RTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDL 591

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G    V T + ++ A+   G     + ++ +    G+ PD   + +L K Y +A  
Sbjct: 592 MEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGE 651

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            E  +++L +M + G+ PN   + + +  + S+
Sbjct: 652 PEKAEQILNQMRKFGVRPNVVIYTQIISGWCSA 684



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 143/326 (43%), Gaps = 12/326 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT +++ +I    + G    AM +F +M+ SGC+P  S +N LI  +     K   L ++
Sbjct: 388 DTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGY----GKIGKLEES 443

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                 M   E  +PN  T NIL++A    R +++   +  ++    + PD+ T+N +  
Sbjct: 444 SRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAK 503

Query: 130 AYGKNGMIKEMES-VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE- 187
           AY + G     E  ++ RM  N+ KP++ T   +++ Y +     KME+  +     KE 
Sbjct: 504 AYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEE---GKMEEALRFFYRMKEL 560

Query: 188 --KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P L  FNS+I  +           V   M      P  +T+  ++  +    ++ R 
Sbjct: 561 GVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRC 620

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            EI+ ++ + G D  +   + + + Y   G P +A+ +       GV P+   Y  +   
Sbjct: 621 EEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISG 680

Query: 306 YTKAN-MKELVQKLLKRMEQNGIVPN 330
           +  A  MK+ +Q   K     G+ PN
Sbjct: 681 WCSAGEMKKAMQVYKKMCGIVGLSPN 706



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 119/263 (45%), Gaps = 2/263 (0%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           KP+++TY  L+ A  + ++   + +L  ++ ++ L PD   +N +++A  ++G + +   
Sbjct: 351 KPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMK 410

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINY 201
           +  +MK + CKP   TFN LI  YGK    ++  ++   ++  +  +P   T N ++  +
Sbjct: 411 IFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAW 470

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE-IFDELSKLGKDMK 260
              R   +A  +  KM +    P  +T+  +   Y    +   A + I   +        
Sbjct: 471 CNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPN 530

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           V T   ++  YC  G   EA   F     +GV P+   +  L K +   N  + V +++ 
Sbjct: 531 VRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVD 590

Query: 321 RMEQNGIVPNKRFFLEALETFSS 343
            ME+ G+ P+   F   +  +SS
Sbjct: 591 LMEEFGVKPDVVTFSTLMNAWSS 613



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 6/242 (2%)

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           + +++F  L E    P + TY  ++ A  +      + S++S+++ N  KPD I FN +I
Sbjct: 337 EAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAII 396

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKY 222
           ++  +    D+  ++F+ +  S  KPT  TFN++I  YGK  +L+  +  +   +     
Sbjct: 397 NASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEML 456

Query: 223 TPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTE 279
            P+  T  C I +  +C+   +  A  I  ++   G    V T N + +AY   G   T 
Sbjct: 457 QPNDRT--CNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTA 514

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
            D++     +  V P+  T   +   Y +    E   +   RM++ G+ PN   F   ++
Sbjct: 515 EDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIK 574

Query: 340 TF 341
            F
Sbjct: 575 GF 576



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/329 (18%), Positives = 142/329 (43%), Gaps = 40/329 (12%)

Query: 36  EMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95
           +M++ G +PD   +N L  A  + R  +   A+ +   + +    + KPN+ T   ++  
Sbjct: 485 KMQSYGVKPDVVTFNTL--AKAYARIGSTCTAEDMIIPRMLH--NKVKPNVRTCGTIVNG 540

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
             +   +++    F  + E  + P+++ +N ++  +     +  +  V+  M+    KPD
Sbjct: 541 YCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPD 600

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
           ++TF+ L++++       + E+++  ++     P +  F+ +   Y +A    KAE +  
Sbjct: 601 VVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILN 660

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
           +M      P+ + Y  II+ +     + +A +++ ++  +                    
Sbjct: 661 QMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGI-------------------- 700

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335
                         +G++P+ +TY+ L   + +A      ++LLK ME   +VP ++  +
Sbjct: 701 --------------VGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRK-TM 745

Query: 336 EALETFSSSLAGSQSGSAKTDLTRSLSTA 364
           + +     S+  S S  A T L  S ST+
Sbjct: 746 QLIADGWKSIGVSNSNDANT-LGSSFSTS 773



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 96/217 (44%), Gaps = 6/217 (2%)

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D+ +   +M+   + G  +E  S+ + +     KP +IT+  L+ +  +++ F  +  + 
Sbjct: 318 DVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLI 377

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             +  +  KP    FN++I    ++    +A  +F+KM      P+  T+  +I  YG  
Sbjct: 378 SKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKI 437

Query: 240 DNVSRAREIFDELSKLGKDM---KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
             +  +  + D +  L  +M      T N +++A+C      EA  +     + GV PD 
Sbjct: 438 GKLEESSRLLDMM--LRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDV 495

Query: 297 STYKLLYKAYTKANMKELVQK-LLKRMEQNGIVPNKR 332
            T+  L KAY +       +  ++ RM  N + PN R
Sbjct: 496 VTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVR 532



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   +S L     + G+   A  + ++MR  G RP+  +Y  +I+        A  + KA
Sbjct: 635 DIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWC----SAGEMKKA 690

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +  ++KM G+    PN+ TY  L+    +A+   +   L K++    + P   T   + D
Sbjct: 691 MQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLIAD 750

Query: 130 AYGKNGM 136
            +   G+
Sbjct: 751 GWKSIGV 757


>gi|296081889|emb|CBI20894.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 143/325 (44%), Gaps = 4/325 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D+  ++ +I    + G  + AM  F +M+ SG +P  S +N LI  +      A    ++
Sbjct: 141 DSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGY----GIAGEPEES 196

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               + M   E  +PN+ TYN+L+RA    +N+ +   +  ++  S L PD  TYN +  
Sbjct: 197 QKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIAT 256

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           AY +NG   + E ++  M+++  +P+  T  ++I  Y K     +  Q    +     +P
Sbjct: 257 AYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQP 316

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            L  FNS+I  +  A  +     V   M      P  IT+  I+  +     + + REIF
Sbjct: 317 NLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIF 376

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D++ K          + + + Y   G P +A+ +       G  P+   +  +   +  A
Sbjct: 377 DDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSA 436

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
              E   K+ ++M + GI PN + F
Sbjct: 437 GRMEYAIKIFEKMCECGIAPNLKTF 461



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 126/264 (47%), Gaps = 3/264 (1%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           KP++VTY  LL A    ++ D ++++  ++ E+ + PD   +N V++A+ ++G ++E   
Sbjct: 104 KPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMK 163

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE--KPTLPTFNSMIIN 200
              +MK +  KP   TFN LI  YG     ++ +++ + LM   E  +P L T+N ++  
Sbjct: 164 YFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLE-LMSQDENVRPNLRTYNVLVRA 222

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
           +   +   KA  V  KM A    P  +TY  I T Y      S+A  I  E+        
Sbjct: 223 WCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPN 282

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
             T   ++  YC  G   EA        ++G+ P+   +  L K +  A  ++ V ++L 
Sbjct: 283 ERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLT 342

Query: 321 RMEQNGIVPNKRFFLEALETFSSS 344
            ME+ G+ P+   F   +  +S++
Sbjct: 343 LMEEFGVKPDVITFSTIMNAWSAA 366



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 135/290 (46%), Gaps = 11/290 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +     + G+   A  +  EM+NS  +P+      +I  +     K   + +A
Sbjct: 247 DAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYC----KEGKIKEA 302

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L +  +MK +   +PN+V +N L++    A + D VN +   + E  + PD+ T++ +M+
Sbjct: 303 LQFVYRMKDL-GLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMN 361

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A+   G + +   +   M   + +PD   +++L   Y +    +K E++  +++ S   P
Sbjct: 362 AWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHP 421

Query: 190 TLPTFNSMIINYGKARLQGKAEY---VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +  F ++I  +  A   G+ EY   +F+KM      P+  T+E +I  YG      ++ 
Sbjct: 422 NVVIFTTIINGWCSA---GRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSE 478

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
           E+   + +     + +TL  + EA+   GL  EA+ +     N  +T ++
Sbjct: 479 EVLQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVKNEEMTHET 528



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 112/240 (46%), Gaps = 3/240 (1%)

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +V ++   + E    P + TY  ++ A         + S++S+++ N  +PD I FN +I
Sbjct: 90  EVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVI 149

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           +++ +     +  + F  +  S  KPT  TFN++I  YG A    +++ + + M+  +  
Sbjct: 150 NAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENV 209

Query: 224 -PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
            P+  TY  ++  +    N+ +A  +  ++   G      T N +  AY  NG  ++A+ 
Sbjct: 210 RPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEG 269

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           +     N  V P+  T  ++   Y K   +KE +Q  + RM+  G+ PN   F   ++ F
Sbjct: 270 IILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQ-FVYRMKDLGLQPNLVVFNSLIKGF 328


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 158/334 (47%), Gaps = 12/334 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSG-CRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           Y  +I+   K G+   A+ +F EM   G  +P+  +YNALI  +    D+ K L  AL Y
Sbjct: 111 YGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYC---DQGK-LDTALLY 166

Query: 73  FQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             +M  +ER     + TYN+L+ A        +   L +E+    LAPD++TYN +++ +
Sbjct: 167 RDRM--VERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGH 224

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G +K+   +   M     +  ++T+  LI +  K+    + +++F   +    +P L
Sbjct: 225 CKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDL 284

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIF 249
             +N++I ++  +    +A  +  +M   +  P  +TY  +  M G C    V  AR++ 
Sbjct: 285 VLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTL--MRGLCLLGRVDEARKLI 342

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE++K G    + T N ++  Y M G   +A  +     N G  P   TY  L +   K 
Sbjct: 343 DEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKN 402

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
              +  + ++K M +NGI P+   ++  +E  ++
Sbjct: 403 GQGDDAENMVKEMVENGITPDDSTYISLIEGLTT 436



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 118/296 (39%), Gaps = 13/296 (4%)

Query: 54  TAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH 113
           TA LH    A   A A   F  M  + R      T+NI+LR    A    +   L +++ 
Sbjct: 10  TASLHPLLSALPSAPAFALFADMFRL-RLPLCTTTFNIMLRHLCSAGKPARALELLRQMP 68

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLLIDSYGKRQAF 172
                P+  TYN V+  +   G ++    ++  M+      P+  T+  +I  + K    
Sbjct: 69  R----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRV 124

Query: 173 DKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKAEYVF---QKMTAMKYTPSFIT 228
           D+  +VF  ++   E KP    +N++I  Y     QGK +       +M       +  T
Sbjct: 125 DEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD---QGKLDTALLYRDRMVERGVAMTVAT 181

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
           Y  ++         + A E+ +E+   G    V T N ++  +C  G   +A  +FEN  
Sbjct: 182 YNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS 241

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             GV     TY  L  A +K    +   KL     + GI P+   +   + + S+S
Sbjct: 242 RRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 297



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 9/164 (5%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLHTRD 61
           +R    D  +Y+ LI      G    A  +  EM      PD   YN L+     L   D
Sbjct: 277 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 336

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           +A+ L   +      +G++   P++VTYN L+   +   +V     +  E+      P +
Sbjct: 337 EARKLIDEM----TKRGIQ---PDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTL 389

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
            TYN ++    KNG   + E+++  M  N   PD  T+  LI+ 
Sbjct: 390 LTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEG 433



 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 10/126 (7%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+K+R    D   Y+ L+  +   G+   A  L  EM   G +PD   YN LI+ +    
Sbjct: 310 MEKKRIAPDDV-TYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKG 368

Query: 61  DKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
           D    +  AL    +M  KG     P ++TYN L++   +    D    + KE+ E+ + 
Sbjct: 369 D----VKDALRIRNEMMNKGF---NPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGIT 421

Query: 119 PDIYTY 124
           PD  TY
Sbjct: 422 PDDSTY 427


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 153/316 (48%), Gaps = 11/316 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G+T+ A+ L   +     +PD  +YN +I +      K K + +A   +
Sbjct: 177 YGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLC----KNKLVGEACNLY 232

Query: 74  QKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            +M   ++  PN+VTY  L+   C     ++ V AL  E+    + PD+YT++ ++DA G
Sbjct: 233 SEMNA-KQIYPNVVTYTTLIYGFCIMGCLIEAV-ALLNEMKLKNINPDVYTFSILIDALG 290

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G +K  + VL+ M     KPD++T+N L+D Y         + VF S+  S   P + 
Sbjct: 291 KEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQ 350

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFD 250
           ++  MI    K ++  +A  +F++M      P+ IT+  +I   G C +  ++   ++ D
Sbjct: 351 SYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLID--GLCKSGRIAYVWDLVD 408

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           ++    +   V T +++++A C N    +A  LF+      + PD  TY +L     K  
Sbjct: 409 KMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGG 468

Query: 311 MKELVQKLLKRMEQNG 326
             ++ Q++ + +   G
Sbjct: 469 RLKIAQEVFQHLLIKG 484



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 142/331 (42%), Gaps = 13/331 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R Y  D    + LI  +  +G+ + A+    ++     + D   Y  LI       +  
Sbjct: 132 KRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCKIGETK 191

Query: 64  KALAKALGYFQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            A+       Q M+ +E    KP++V YNI++ +  + + V +   L+ E++   + P++
Sbjct: 192 AAI-------QLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNV 244

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TY  ++  +   G + E  ++L+ MK     PD+ TF++LID+ GK       + V   
Sbjct: 245 VTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAV 304

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           +M +  KP + T+NS++  Y        A+YVF  M     TP   +Y  +I   G C  
Sbjct: 305 MMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMID--GLCKT 362

Query: 242 --VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             V  A  +F+E+          T N++++  C +G       L +   +     D  TY
Sbjct: 363 KMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITY 422

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             L  A  K    +    L K+M    I P+
Sbjct: 423 SSLIDALCKNCHLDQAIALFKKMITQEIQPD 453



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 134/319 (42%), Gaps = 40/319 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   +S LI  +GK+G+ + A  + + M  +  +PD   YN+L+  +    +      K 
Sbjct: 278 DVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNE-----VKH 332

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
             Y           P + +Y I++    + + VD+  +LF+E+    + P+  T+N ++D
Sbjct: 333 AKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLID 392

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K+G I  +  ++ +M+      D+IT++ LID+  K    D+   +FK ++  + +P
Sbjct: 393 GLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQP 452

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+  +I    K      A+ VFQ +    Y                           
Sbjct: 453 DMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGY--------------------------- 485

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
                    + + T   M+  +C  GL  EA  L     + G  P++ T+ ++  A  + 
Sbjct: 486 --------HLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPNAITFDIIICALFEK 537

Query: 310 NMKELVQKLLKRMEQNGIV 328
           +  +  +KLL+ M   G++
Sbjct: 538 DENDKAEKLLREMIARGLL 556



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/318 (20%), Positives = 120/318 (37%), Gaps = 40/318 (12%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           LI      GQ  L+  + + +   G  PD      LI   L  R + K   KAL +   +
Sbjct: 110 LINCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKG-LCLRGEVK---KALKFHDDV 165

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
             +E  + + ++Y  L+    +         L + L E  + PD+  YN ++D+  KN +
Sbjct: 166 VALEF-QLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKL 224

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           + E  ++ S M + Q  P+++T+  LI  +       +   +   +      P + TF+ 
Sbjct: 225 VGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSI 284

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           +I   GK      A+ V   M      P  +TY  ++  Y   + V  A+ +F+ +++  
Sbjct: 285 LIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQ-- 342

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
                                             GVTP   +Y ++     K  M +   
Sbjct: 343 ---------------------------------SGVTPGVQSYTIMIDGLCKTKMVDEAI 369

Query: 317 KLLKRMEQNGIVPNKRFF 334
            L + M+   ++PN   F
Sbjct: 370 SLFEEMKHKNVIPNTITF 387



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 90/181 (49%), Gaps = 5/181 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K +  I +T  ++ LI  + K G+      L  +MR+     D   Y++LI A      K
Sbjct: 376 KHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALC----K 431

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L +A+  F+KM   E  +P++ TY IL+    +   +     +F+ L       DI 
Sbjct: 432 NCHLDQAIALFKKMITQE-IQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIR 490

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++  + K G+  E  ++LS+M+ N C P+ ITF+++I +  ++   DK E++ + +
Sbjct: 491 TYTVMISGFCKAGLFDEALALLSKMEDNGCIPNAITFDIIICALFEKDENDKAEKLLREM 550

Query: 183 M 183
           +
Sbjct: 551 I 551


>gi|410110059|gb|AFV61109.1| pentatricopeptide repeat-containing protein 123, partial
           [Acantholippia salsoloides]
          Length = 433

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 138/297 (46%), Gaps = 5/297 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YNA I        KAK   +
Sbjct: 45  GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAXINVF----GKAKLFRE 100

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +M+ +    PN  +Y+ LL    + +   +  ++F EL E     D+ T N ++
Sbjct: 101 ARSLISEMR-IAGVMPNTASYSTLLTMYVENKKFLEALSVFSELREMKCLLDLTTCNIMI 159

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +     +
Sbjct: 160 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIE 219

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSM++ YGK     KA  + Q+M      P+ ITY  II+++G    + RA  +
Sbjct: 220 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQGRGIEPNSITYSTIISIWGKVGKLDRAAML 279

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           F +L   G ++       M+ AY   GL   A  L     +    P  +   +L  A
Sbjct: 280 FQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKSPDNIPRDTAIHILAGA 336



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 138/299 (46%), Gaps = 5/299 (1%)

Query: 36  EMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95
           EMR+    PD   Y+ LIT H     K      AL + QKM+  +R   ++V Y+ L+  
Sbjct: 2   EMRDRALSPDRYTYSTLIT-HF---GKEGLFDAALSWLQKME-QDRVPGDLVLYSNLIEL 56

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
             +  +  +  ++F  L  S   PD+  YN  ++ +GK  + +E  S++S M+     P+
Sbjct: 57  SRKLCDYSKAISIFSRLKRSGFTPDLVAYNAXINVFGKAKLFREARSLISEMRIAGVMPN 116

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
             +++ L+  Y + + F +   VF  L   K    L T N MI  YG+  +  +A+ +F 
Sbjct: 117 TASYSTLLTMYVENKKFLEALSVFSELREMKCLLDLTTCNIMIDVYGQLGMAKEADKLFW 176

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T N+M+  Y    
Sbjct: 177 GMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTL 236

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
              +A+ L +     G+ P+S TY  +   + K    +    L +++  +G+  ++  F
Sbjct: 237 EHEKANNLIQEMQGRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILF 295



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 149/320 (46%), Gaps = 5/320 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI   GK+G    A+    +M       D  +Y+ LI       D +KA++  
Sbjct: 11  DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAIS-- 68

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F ++K      P++V YN  +    +A+   +  +L  E+  + + P+  +Y+ ++ 
Sbjct: 69  --IFSRLK-RSGFTPDLVAYNAXINVFGKAKLFREARSLISEMRIAGVMPNTASYSTLLT 125

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y +N    E  SV S ++  +C  D+ T N++ID YG+     + +++F  +     +P
Sbjct: 126 MYVENKKFLEALSVFSELREMKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 185

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG      +A  + 
Sbjct: 186 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 245

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+   G +    T + ++  +   G    A +LF+   + GV  D   ++ +  AY +A
Sbjct: 246 QEMQGRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERA 305

Query: 310 NMKELVQKLLKRMEQNGIVP 329
            +    ++LL  ++    +P
Sbjct: 306 GLVAHAKRLLHELKSPDNIP 325



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 149/357 (41%), Gaps = 36/357 (10%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+  I V GK    R A  L SEMR +G  P+ + Y+ L+T ++  +  
Sbjct: 74  KRSGFTPDLVAYNAXINVFGKAKLFREARSLISEMRIAGVMPNTASYSTLLTMYVENKKF 133

Query: 63  AKALAKALGYFQKMK-----------------------------GMER--CKPNIVTYNI 91
            +AL+      ++MK                             GM +   +PN+V+YN 
Sbjct: 134 LEALS-VFSELREMKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 192

Query: 92  LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151
           LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+   
Sbjct: 193 LLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQGRG 252

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
            +P+ IT++ +I  +GK    D+   +F+ L  S  +     F +MI+ Y +A L   A+
Sbjct: 253 IEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAK 312

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
            +  ++     +P  I  +  I +      +  A  +F      G+   ++    M+  +
Sbjct: 313 RLLHELK----SPDNIPRDTAIHILAGAGRIEEATYVFRRAIDAGEVKDITVFERMIHLF 368

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
                      +F+    +G  PDS+   L+  AY K +  +    +   M++ G V
Sbjct: 369 SKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANSVYMEMQEVGCV 425


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 157/344 (45%), Gaps = 16/344 (4%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M++Q+    D+  Y  LI+ M K+G+   A  +F EM   G RP   +YN LI    +  
Sbjct: 282 MKRQKIE-PDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKG 340

Query: 61  DKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
           +    L  A  Y  +M  KG+    P + TYN L+ A    +  D+   + KE+ E  ++
Sbjct: 341 N----LDMASAYKDEMLKKGIS---PTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGIS 393

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD  TYN +++ Y +    K+   +   M ++  KP   T+  L+    K+    + + +
Sbjct: 394 PDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDL 453

Query: 179 FKSLMHSKEKPTLPTFNSMIINY-GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           FK +      P +  FN++I  +   + ++G  E + + M  MK  P  +T+  I  M G
Sbjct: 454 FKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFE-LLKDMDRMKVPPDEVTFNTI--MQG 510

Query: 238 YC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           +C    V  ARE+FDE+ + G      + N ++  Y   G   +A  +     + G  P 
Sbjct: 511 HCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPT 570

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
             TY  L +   K    +L ++LLK M   G+ P+   +   +E
Sbjct: 571 VLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIE 614



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 137/299 (45%), Gaps = 13/299 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ ++      G+   A  + + M+     PD   Y +LI+       K   L +A   F
Sbjct: 259 YNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMC----KQGRLEEASKIF 314

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           ++M  KG+   +P+ V YN L+       N+D  +A   E+ +  ++P + TYN ++ A 
Sbjct: 315 EEMVQKGL---RPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHAL 371

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
                  E E ++  ++     PD IT+N+LI+ Y +     K   +   ++ S  KPT 
Sbjct: 372 FMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTK 431

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIF 249
            T+ S++    K     +A+ +F+K+T+    P  I +  +I   G+C   NV  A E+ 
Sbjct: 432 KTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALID--GHCSNSNVKGAFELL 489

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            ++ ++       T N +++ +C  G   EA  LF+     G+ PD  ++  L   Y++
Sbjct: 490 KDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSR 548



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 147/334 (44%), Gaps = 9/334 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K++  +      + L+++  K  +T  A  L++EM     +     +N +I        K
Sbjct: 178 KEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLC----K 233

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L KA  +   M+     KPNIVTYN ++     +  V+  +A+   +    + PD +
Sbjct: 234 EGKLKKAKDFVGHME-TSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSF 292

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++    K G ++E   +   M     +P  + +N LID +  +   D M   +K  
Sbjct: 293 TYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLD-MASAYKDE 351

Query: 183 MHSKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           M  K   PT+ T+NS+I      +   +AE + +++     +P  ITY  +I  Y  C N
Sbjct: 352 MLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCAN 411

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
             +A  + DE+   G      T  ++L          EAD LF+   + GV PD   +  
Sbjct: 412 AKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNA 471

Query: 302 LYKAY-TKANMKELVQKLLKRMEQNGIVPNKRFF 334
           L   + + +N+K   + LLK M++  + P++  F
Sbjct: 472 LIDGHCSNSNVKGAFE-LLKDMDRMKVPPDEVTF 504



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 125/273 (45%), Gaps = 7/273 (2%)

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           Y  K KG+    P I T N LL    +    +    L+ E+    +   +YT+N +++  
Sbjct: 175 YTMKEKGV---LPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVL 231

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G +K+ +  +  M+++  KP+I+T+N ++  Y      +  + +  ++   K +P  
Sbjct: 232 CKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDS 291

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIF 249
            T+ S+I    K     +A  +F++M      PS + Y  +I   G+C+  N+  A    
Sbjct: 292 FTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLID--GFCNKGNLDMASAYK 349

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE+ K G    +ST N+++ A  M     EA+ + +     G++PD+ TY +L   Y + 
Sbjct: 350 DEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRC 409

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
              +    L   M  +GI P K+ +   L   S
Sbjct: 410 ANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLS 442



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 84/210 (40%)

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           G    I+E+   L+  +        I F+ LI S       D+  + F ++      PT+
Sbjct: 127 GTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTI 186

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T NS++  + K      A  ++ +M  ++   S  T+  +I +      + +A++    
Sbjct: 187 ETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGH 246

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G    + T N ++  YC +G    AD +        + PDS TY  L     K   
Sbjct: 247 METSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGR 306

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            E   K+ + M Q G+ P+   +   ++ F
Sbjct: 307 LEEASKIFEEMVQKGLRPSAVIYNTLIDGF 336


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 153/326 (46%), Gaps = 6/326 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  LI  + K G+TR A+ L  +M   G RP+  +YN ++        K   + +A
Sbjct: 160 DEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLC----KEGLVTEA 215

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
            G   +M G   C  ++ TYN L+   C   +    V  L + + +  + PD+YT+N ++
Sbjct: 216 CGLCSEMVGKGICI-DVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILV 274

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           DA  K GM+ E  +V   M     +PD+++ N L++ +  R    + ++VF  ++   + 
Sbjct: 275 DALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKL 334

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P + +++++I  Y K ++  +A  +  +M      P  +TY C++        V    ++
Sbjct: 335 PNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDL 394

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            + +   G+   + T N +L+ Y       +A  LF++  + G++P+  TY +L     K
Sbjct: 395 VEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCK 454

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
               +  +++ + +   G  PN R +
Sbjct: 455 GGRMKAAKEIFQLLSVKGCRPNIRTY 480



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 112/225 (49%), Gaps = 7/225 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ L+  + K G    A  +F  M   G  PD    NAL+            +++A
Sbjct: 266 DVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWC----LRGCMSEA 321

Query: 70  LGYFQKMKGMERCK-PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
              F +M  +ER K PN+++Y+ L+    + + VD+   L  E+H+  L PD  TYN ++
Sbjct: 322 KEVFDRM--VERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLL 379

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D   K+G +     ++  M+++   PD+IT+N+L+D Y KR+  DK   +F+ ++ +   
Sbjct: 380 DGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGIS 439

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           P + T+N +I    K      A+ +FQ ++     P+  TY  +I
Sbjct: 440 PNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMI 484



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 136/301 (45%), Gaps = 14/301 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEM-RNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           D   Y+ LI      GQ + A+ L +EM      RPD   +N L+ A      K   +A+
Sbjct: 230 DVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALC----KLGMVAE 285

Query: 69  ALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A   F  M  +G+E   P++V+ N L+        + +   +F  + E    P++ +Y+ 
Sbjct: 286 ARNVFGLMIKRGLE---PDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYST 342

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++ Y K  M+ E   +L+ M      PD +T+N L+D   K         + +++  S 
Sbjct: 343 LINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASG 402

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
           + P L T+N ++ +Y K     KA  +FQ +     +P+  TY  +I   G C    +  
Sbjct: 403 QAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILID--GLCKGGRMKA 460

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A+EIF  LS  G    + T N M+      GL  EA+ L     + G  P++ T+  L +
Sbjct: 461 AKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAEALLLEMVDDGFPPNAVTFDPLVR 520

Query: 305 A 305
           A
Sbjct: 521 A 521



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 109/250 (43%), Gaps = 2/250 (0%)

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
           C + R  + +N L+        + D   Y  +++   K G  ++   +L +M+    +P+
Sbjct: 137 CLKGRTFEALN-LYDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPN 195

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY-GKARLQGKAEYVF 214
           +I +N+++D   K     +   +   ++       + T+NS+I  + G  + QG    + 
Sbjct: 196 LIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLN 255

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           + +      P   T+  ++        V+ AR +F  + K G +  V + NA++  +C+ 
Sbjct: 256 EMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLR 315

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           G  +EA  +F+     G  P+  +Y  L   Y K  M +   +LL  M Q  +VP+   +
Sbjct: 316 GCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTY 375

Query: 335 LEALETFSSS 344
              L+  S S
Sbjct: 376 NCLLDGLSKS 385



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 80/162 (49%), Gaps = 9/162 (5%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR  + DT  Y+ L+  + K G+      L   MR SG  PD   YN L+  +L    K 
Sbjct: 365 QRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYL----KR 420

Query: 64  KALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           + L KAL  FQ +   G+    PNI TYNIL+    +   +     +F+ L      P+I
Sbjct: 421 ECLDKALALFQHIVDTGIS---PNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNI 477

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
            TYN +++   + G++ E E++L  M  +   P+ +TF+ L+
Sbjct: 478 RTYNIMINGLRREGLLDEAEALLLEMVDDGFPPNAVTFDPLV 519



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 7/167 (4%)

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR----LQGKAEYVFQKMTAMKYT 223
           K   FD     F  ++H    P++ + N ++ +  K +    +     ++  K T     
Sbjct: 32  KTPTFDDAVSTFHRMLHLHPPPSIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKGTP---K 88

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
           PS +T    I    +   +  A  +  ++ K G  +   TL  +++  C+ G   EA  L
Sbjct: 89  PSLVTLSIFINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNL 148

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           ++++ + G + D   Y  L     K        +LL++ME+ G+ PN
Sbjct: 149 YDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPN 195


>gi|356529360|ref|XP_003533262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 162/366 (44%), Gaps = 48/366 (13%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  +   Y  L+  + K G T  A+    +M      P+  VYNA++        K   +
Sbjct: 176 YHCNARTYGALVNGLCKIGDTSGALECLKKMVKRNLGPNVVVYNAILDGLC----KRGLV 231

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKEL-HESILAPDIYTY 124
            +ALG   +M G+   +PN+VTYN L++  C +     +   LF E+  E  + PD+ T+
Sbjct: 232 GEALGLLHEM-GVVNVEPNVVTYNCLIQGLCGEFGGWREGVGLFNEMVAEKGIVPDVQTF 290

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           + ++D + K G++   ESV+  M     +P+++T+N LI  Y  R   ++  +VF  ++ 
Sbjct: 291 SILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMVR 350

Query: 185 SKEK--PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD-- 240
             E   P++ T NS+I  + K +   KA  +  +M      P   T+  +I   G+C+  
Sbjct: 351 EGEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWTSLIG--GFCEVK 408

Query: 241 -------------------NV----------------SRAREIFDELSKLGKDMKVSTLN 265
                              N+                S A  +F  + K G D+ +   N
Sbjct: 409 KPLAARELFFTMKEHGQVPNLQTCAVVLDGLLKCWLDSEAVTLFRAMMKSGLDLDIVIYN 468

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            ML+  C  G   +A  L       G+  DS TY ++ K   +  + +  ++LL++M++N
Sbjct: 469 IMLDGMCKMGKLNDARKLLSCVLVKGLKIDSYTYNIMIKGLCREGLLDDAEELLRKMKEN 528

Query: 326 GIVPNK 331
           G  PNK
Sbjct: 529 GCPPNK 534



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 132/312 (42%), Gaps = 15/312 (4%)

Query: 26  QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME-RCKP 84
           +T L   +   M   G  P     N ++       D    +  AL   +KM+ +   C  
Sbjct: 125 KTTLGFAVLGLMTKIGLEPTLVTLNTIVNGLCIEGD----VNHALWLVEKMENLGYHC-- 178

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           N  TY  L+    +  +        K++ +  L P++  YN ++D   K G++ E   +L
Sbjct: 179 NARTYGALVNGLCKIGDTSGALECLKKMVKRNLGPNVVVYNAILDGLCKRGLVGEALGLL 238

Query: 145 SRMKSNQCKPDIITFNLLIDSY-GKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYG 202
             M     +P+++T+N LI    G+   + +   +F  ++  K   P + TF+ ++  + 
Sbjct: 239 HEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGVGLFNEMVAEKGIVPDVQTFSILVDGFC 298

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDM- 259
           K  L  +AE V   M  +   P+ +TY  +I   GYC    +  A  +F  + + G+   
Sbjct: 299 KEGLLLRAESVVGFMVRIGVEPNVVTYNSLIA--GYCLRSQMEEAMRVFGLMVREGEGCL 356

Query: 260 -KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
             V T N+++  +C      +A  L       G+ PD  T+  L   + +       ++L
Sbjct: 357 PSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWTSLIGGFCEVKKPLAAREL 416

Query: 319 LKRMEQNGIVPN 330
              M+++G VPN
Sbjct: 417 FFTMKEHGQVPN 428



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/275 (20%), Positives = 115/275 (41%), Gaps = 8/275 (2%)

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           K++  A A+   + +  +     ++ T NI +      R      A+   + +  L P +
Sbjct: 86  KSQHYATAISLIKILHSLGDGSADVCTLNIAINCLCHMRKTTLGFAVLGLMTKIGLEPTL 145

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            T N +++     G +     ++ +M++     +  T+  L++   K        +  K 
Sbjct: 146 VTLNTIVNGLCIEGDVNHALWLVEKMENLGYHCNARTYGALVNGLCKIGDTSGALECLKK 205

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++     P +  +N+++    K  L G+A  +  +M  +   P+ +TY C+I   G C  
Sbjct: 206 MVKRNLGPNVVVYNAILDGLCKRGLVGEALGLLHEMGVVNVEPNVVTYNCLIQ--GLCGE 263

Query: 242 VSRARE---IFDEL-SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
               RE   +F+E+ ++ G    V T + +++ +C  GL   A+ +      +GV P+  
Sbjct: 264 FGGWREGVGLFNEMVAEKGIVPDVQTFSILVDGFCKEGLLLRAESVVGFMVRIGVEPNVV 323

Query: 298 TYKLLYKAYTKANMKELVQKLLKRM--EQNGIVPN 330
           TY  L   Y   +  E   ++   M  E  G +P+
Sbjct: 324 TYNSLIAGYCLRSQMEEAMRVFGLMVREGEGCLPS 358



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 67/328 (20%), Positives = 128/328 (39%), Gaps = 42/328 (12%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  ++  + D   +S L+    K+G    A  +   M   G  P+   YN+LI  +   R
Sbjct: 277 MVAEKGIVPDVQTFSILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIAGYC-LR 335

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            + +   +  G    ++  E C P++VT+N L+    + + VD+  +L  E+    L PD
Sbjct: 336 SQMEEAMRVFGLM--VREGEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPD 393

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           ++T+  ++  + +   +K              KP              R+ F  M++   
Sbjct: 394 VFTWTSLIGGFCE---VK--------------KP-----------LAARELFFTMKE--- 422

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC- 239
                 + P L T   ++    K  L  +A  +F+ M         + Y   I + G C 
Sbjct: 423 ----HGQVPNLQTCAVVLDGLLKCWLDSEAVTLFRAMMKSGLDLDIVIYN--IMLDGMCK 476

Query: 240 -DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              ++ AR++   +   G  +   T N M++  C  GL  +A+ L       G  P+  +
Sbjct: 477 MGKLNDARKLLSCVLVKGLKIDSYTYNIMIKGLCREGLLDDAEELLRKMKENGCPPNKCS 536

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNG 326
           Y +  +   +       +K L+ M+  G
Sbjct: 537 YNVFVQGLLRKYDIARSRKYLQIMKDKG 564


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 140/324 (43%), Gaps = 17/324 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  +  +G  + A+ +  +MR +GC P+   YN L+ A     +   A        
Sbjct: 193 YNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGA-------- 244

Query: 74  QKMKGMER---CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           +++ GM R    KPN+VT+N ++    +A  ++    +F E+    LAPD  +YN ++  
Sbjct: 245 ERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGG 304

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           Y K G   E  SV + M      PD++TF  LI    K    ++   + + +     +  
Sbjct: 305 YCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMN 364

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             TF ++I  + K      A    + M   +  PS + Y  +I  Y     +  ARE+  
Sbjct: 365 EVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLH 424

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKAYT 307
           E+   G    V T + ++ AYC N    +    FE +  M   GV PD+ TY  L +   
Sbjct: 425 EMEAKGLKPDVVTYSTIISAYCKN---CDTHSAFELNQQMLEKGVLPDAITYSSLIRVLC 481

Query: 308 KANMKELVQKLLKRMEQNGIVPNK 331
                     L K M + G+ P++
Sbjct: 482 GEKRLSDAHVLFKNMIKLGLQPDE 505



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 132/287 (45%), Gaps = 8/287 (2%)

Query: 46  PSV--YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD 103
           PSV  YNA++ A         +L  A  +F  M   +   PN+ TYNIL+RA     +  
Sbjct: 154 PSVLAYNAVLLAL-----SDASLTSARRFFDSMLS-DGVAPNVYTYNILVRALCGRGHRK 207

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +  ++ +++  +   P++ TYN ++ A+ + G +   E ++  M+    KP+++TFN ++
Sbjct: 208 EALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMV 267

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           +   K    +   +VF  ++     P   ++N+++  Y KA    +A  VF +MT     
Sbjct: 268 NGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIM 327

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
           P  +T+  +I +     N+ RA  +  ++ + G  M   T  A+++ +C  G   +A L 
Sbjct: 328 PDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLA 387

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                   + P    Y  L   Y      +  ++LL  ME  G+ P+
Sbjct: 388 VRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPD 434



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 144/318 (45%), Gaps = 9/318 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ ++  M K G+   A  +F EM   G  PD   YN L+  +     KA    +AL  F
Sbjct: 263 FNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYC----KAGCSHEALSVF 318

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  KG+    P++VT+  L+    +A N+++   L +++ E  L  +  T+  ++D +
Sbjct: 319 AEMTQKGI---MPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGF 375

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G + +    +  MK  + KP ++ +N LI+ Y      D+  ++   +     KP +
Sbjct: 376 CKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDV 435

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T++++I  Y K      A  + Q+M      P  ITY  +I +      +S A  +F  
Sbjct: 436 VTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKN 495

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + KLG      T  ++++ +C  G    A  L +     GV PD  TY +L    +K+  
Sbjct: 496 MIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSAR 555

Query: 312 KELVQKLLKRMEQNGIVP 329
               Q+LL ++     +P
Sbjct: 556 AMEAQQLLFKLYHEDPIP 573



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 148/346 (42%), Gaps = 28/346 (8%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           Q+  + D   ++ LI VM K G    A+ L  +MR  G + +   + ALI        K 
Sbjct: 323 QKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFC----KK 378

Query: 64  KALAKALGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             L  AL     ++GM++C  KP++V YN L+        +D+   L  E+    L PD+
Sbjct: 379 GFLDDAL---LAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDV 435

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TY+ ++ AY KN        +  +M      PD IT++ LI      +       +FK+
Sbjct: 436 VTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKN 495

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++    +P   T+ S+I  + K      A  +  KM      P  +TY  +I        
Sbjct: 496 MIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSAR 555

Query: 242 VSRAREI---------------FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
              A+++               +D L    +  ++ ++ A+L+ +CM GL  EAD ++++
Sbjct: 556 AMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQS 615

Query: 287 SHNMGVTPDSSTYKLLYKAYTKAN--MKELVQKLLKRMEQNGIVPN 330
             +     D S Y +L   + +A   MK L     K+M Q G  PN
Sbjct: 616 MLDRNWNLDGSVYSVLIHGHCRAGNVMKAL--SFHKQMLQGGFAPN 659



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 112/258 (43%), Gaps = 36/258 (13%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+++ YN +L A + A ++      F  +    +AP++YTYN ++ A    G  KE  S+
Sbjct: 154 PSVLAYNAVLLALSDA-SLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSI 212

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L  M+   C P+++T+N L+ ++ +    D  E++   +     KP L TFNSM+    K
Sbjct: 213 LRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCK 272

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A   GK E                                 AR++FDE+ + G      +
Sbjct: 273 A---GKME--------------------------------DARKVFDEMVREGLAPDGVS 297

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N ++  YC  G   EA  +F      G+ PD  T+  L     KA   E    L+++M 
Sbjct: 298 YNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMR 357

Query: 324 QNGIVPNKRFFLEALETF 341
           + G+  N+  F   ++ F
Sbjct: 358 ERGLQMNEVTFTALIDGF 375



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 149/338 (44%), Gaps = 28/338 (8%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI      G+   A  L  EM   G +PD   Y+ +I+A+    D   A        
Sbjct: 403 YNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFE----LN 458

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           Q+M  KG+    P+ +TY+ L+R     + +   + LFK + +  L PD +TY  ++D +
Sbjct: 459 QQMLEKGV---LPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGH 515

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-QAFDKMEQVFK---------- 180
            K G ++   S+  +M      PD++T+++LI+   K  +A +  + +FK          
Sbjct: 516 CKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPAN 575

Query: 181 ----SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
               +LMH   K  L +  +++  +    L  +A+ V+Q M    +      Y  +I  +
Sbjct: 576 TKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLI--H 633

Query: 237 GYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
           G+C   NV +A     ++ + G     ++  +++     NG+  EAD + +   N     
Sbjct: 634 GHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNYCSLA 693

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
           D+   K L          + V  +L  M ++G++P+ R
Sbjct: 694 DAEASKALIDLNLNEGNVDAVLDVLHGMAKDGLLPSPR 731


>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
          Length = 730

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 152/320 (47%), Gaps = 17/320 (5%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN---SGCRPDPSVYNALITAHLHTR- 60
           R+   D GI S L+    +   +    +L  E+ N   SG +P+   YNA+I A      
Sbjct: 126 RFASDDKGIDSVLLNFESRLCGSDDYTFLLRELGNRGDSGLKPNLVTYNAVIDACGKGGV 185

Query: 61  --DKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
             ++A  +   +  F +M  +G+E+   +I TYN LL A  +   +D    +  E+    
Sbjct: 186 DFNRAAEIFDEMNLFSEMLYRGIEQ---DIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKH 242

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           + P++ TY+ V+D Y K G + E  ++ + MK      D +++N L+  Y K   F++  
Sbjct: 243 IMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEAL 302

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE---YVFQKMTAMKYTPSFITYECII 233
            V K +  S  K    T+N+++  YGK   QGK E    VF++M A +  P+ +TY  +I
Sbjct: 303 NVCKEMESSGIKKDAVTYNALLGGYGK---QGKYEEVKRVFEEMKAERIFPNLLTYSTLI 359

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
            +Y        A E+F E  K G    V   +A+++A C NGL   A    +     G+ 
Sbjct: 360 DVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIR 419

Query: 294 PDSSTYKLLYKAYTKANMKE 313
           P+  TY  +  A+ ++ + E
Sbjct: 420 PNVVTYNSIIDAFGRSGIVE 439



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 136/278 (48%), Gaps = 20/278 (7%)

Query: 14  YSKLIAVMGKKGQ--TRLA-----MWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y+ +I   GK G    R A     M LFSEM   G   D   YN L+ A      K   +
Sbjct: 173 YNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQDIFTYNTLLDAVC----KGGQM 228

Query: 67  AKALGYFQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
             A   FQ M  M R    PN+VTY+ ++   A+A  +D+   LF E+  + +  D  +Y
Sbjct: 229 DLA---FQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSY 285

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++  Y K G  +E  +V   M+S+  K D +T+N L+  YGK+  ++++++VF+ +  
Sbjct: 286 NTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKA 345

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--V 242
            +  P L T++++I  Y K  L  +A  VF++          + Y  +I     C N  V
Sbjct: 346 ERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALID--ALCKNGLV 403

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
             A    DE++K G    V T N++++A+  +G+  +A
Sbjct: 404 ESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDA 441



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 142/330 (43%), Gaps = 33/330 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+  + K GQ  LA  + SEM      P+   Y+ +I  +     KA  L +A
Sbjct: 211 DIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYA----KAGRLDEA 266

Query: 70  LGYFQKMK----GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L  F +MK    G++R     V+YN LL   A+    ++   + KE+  S +  D  TYN
Sbjct: 267 LNLFNEMKFASIGLDR-----VSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYN 321

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++  YGK G  +E++ V   MK+ +  P+++T++ LID Y K   + +  +VF+    +
Sbjct: 322 ALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKA 381

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
             K  +  ++++I    K  L   A     +MT     P+ +TY  II  +G    V  A
Sbjct: 382 GLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDA 441

Query: 246 RE-------------IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV 292
            E             IF +L+               E  C+         +F   H + +
Sbjct: 442 TESEVGDKEDNQIIKIFGQLAAEKTCHAKKENRGRQEILCILA-------VFHKMHELDI 494

Query: 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
            P+  T+  +  A ++ N  E    LL+ +
Sbjct: 495 KPNVVTFSAILNACSRCNSFEDASMLLEEL 524



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 82/204 (40%), Gaps = 45/204 (22%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI--------------- 53
           AD  +YS LI  + K G    A+    EM   G RP+   YN++I               
Sbjct: 385 ADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDATES 444

Query: 54  ---------------------TAHLHTRDKAK-ALAKALGYFQKMKGMERCKPNIVTYNI 91
                                T H    ++ +  +   L  F KM  ++  KPN+VT++ 
Sbjct: 445 EVGDKEDNQIIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHKMHELD-IKPNVVTFSA 503

Query: 92  LLRACAQARNVDQVNALFKELHESILAPDIY-TYNGVMDAYGKNGMIKEMESVLSRMKSN 150
           +L AC++  + +  + L +EL   +    +Y   +G++  YG N  + + +S+   +K  
Sbjct: 504 ILNACSRCNSFEDASMLLEELR--LFDNQVYGVAHGLLMGYGDNVWV-QAQSLFDEVKQM 560

Query: 151 QCKPDIITFNLLID---SYGKRQA 171
                   +N L D    +G+R+ 
Sbjct: 561 DSSTASAFYNALTDMLWHFGQRRG 584


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1114

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 152/326 (46%), Gaps = 42/326 (12%)

Query: 14   YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
            Y+ LI  + +     +A  +F +++N+GC PD + YN L+ A+     K+  + +    +
Sbjct: 790  YNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAY----GKSGKIDELFEIY 845

Query: 74   QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL-HESILAPDIYTYNGVMDAYG 132
            ++M   E C+PN +T+NI++    +A NVD    L+ +L  +   +P   TY  ++D   
Sbjct: 846  KEMSAHE-CEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLS 904

Query: 133  KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
            K+G + E + +   M    C+P+   +N+LI+ +GK    D    +FK ++    +P L 
Sbjct: 905  KSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLK 964

Query: 193  TFN----------------------------------SMIIN-YGKARLQGKAEYVFQKM 217
            T++                                  ++IIN  GK     +A  +F +M
Sbjct: 965  TYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEM 1024

Query: 218  TAMK-YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
               +  TP   TY  +I   G    V  A +I++E+ + G +  V T NA++  Y ++G 
Sbjct: 1025 KKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGK 1084

Query: 277  PTEADLLFENSHNMGVTPDSSTYKLL 302
            P  A  +++     G +P++ TY+ L
Sbjct: 1085 PEHAYAVYQTMVTGGFSPNTGTYEQL 1110



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 148/330 (44%), Gaps = 5/330 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           + ++R    DT  Y  +   +  KG  R A +   +MR  G   +   YN LI   L   
Sbjct: 145 LMQKRIIKRDTNTYLTIFKCLSVKGGLRQAPFALRKMREFGFVLNAYSYNGLIHLLL--- 201

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K++   +A+  +++M  ++  +P++ TY+ L+    + R+++ V  L KE+    L P+
Sbjct: 202 -KSRFCTEAMEVYRRMI-LDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPN 259

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           +YT+   +   G+ G I E   +L RM    C PD++T+ +LID+    +  D  ++VF 
Sbjct: 260 VYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFA 319

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +   + KP   T+ +++  +   R        + +M    + P  +T+  ++       
Sbjct: 320 KMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAG 379

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           N   A    D +   G    + T N ++          +A  +F+N  ++GV P + TY 
Sbjct: 380 NFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYI 439

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +    Y K+       +  ++M+  GI PN
Sbjct: 440 VFIDYYGKSGDSVSALETFEKMKTKGIAPN 469



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 151/352 (42%), Gaps = 40/352 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI ++ K      AM ++  M   G RP    Y++L+      RD    +   +G  
Sbjct: 193 YNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRD----IESVMGLL 248

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M+ +   KPN+ T+ I +R   +A  +++   + K + +    PD+ TY  ++DA   
Sbjct: 249 KEMETLGL-KPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCT 307

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              +   + V ++MK+ + KPD +T+  L+D +   +  D + Q +  +      P + T
Sbjct: 308 ARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVT 367

Query: 194 FNSMII------NYGKA-------RLQG----------------------KAEYVFQKMT 218
           F  ++       N+G+A       R QG                       A  +F  M 
Sbjct: 368 FTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNME 427

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           ++   P+  TY   I  YG   +   A E F+++   G    +   NA L +    G   
Sbjct: 428 SLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDR 487

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           EA  +F    ++G+ PDS TY ++ K Y+K    +   KLL  M +N   P+
Sbjct: 488 EAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPD 539



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 138/306 (45%), Gaps = 6/306 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  + +  +   A+ +F  M + G +P    Y   I  +  + D   AL      F
Sbjct: 403 YNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALET----F 458

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KMK  +   PNIV  N  L + A+A    +   +F  L +  L PD  TYN +M  Y K
Sbjct: 459 EKMK-TKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSK 517

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G I E   +LS M  N C+PD+I  N LI++  K    D+  ++F  +   K KPT+ T
Sbjct: 518 VGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVT 577

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N+++   GK     +A  +F+ M      P+ IT+  +       D V+ A ++  ++ 
Sbjct: 578 YNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMM 637

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
            +G    V T N ++     NG   EA   F     + V PD  T   L     KA + E
Sbjct: 638 DMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVKAGLIE 696

Query: 314 LVQKLL 319
              K++
Sbjct: 697 DAYKII 702



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 135/301 (44%), Gaps = 8/301 (2%)

Query: 34   FSE--MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI 91
            FSE  + N  CR   S+   +I       + + A       F+K       +P + TYN+
Sbjct: 737  FSERLVANGICRDGDSILVPIIRYSFKHNNASGARM----LFEKFTKDLGVQPKLPTYNL 792

Query: 92   LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151
            L+    +A  ++    +F ++  +   PD+ TYN ++DAYGK+G I E+  +   M +++
Sbjct: 793  LIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHE 852

Query: 152  CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKA 210
            C+P+ IT N++I    K    D    ++  LM  ++  PT  T+  +I    K+    +A
Sbjct: 853  CEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEA 912

Query: 211  EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
            + +F+ M+     P+   Y  +I  +G       A  +F  + K G    + T + +++ 
Sbjct: 913  KQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDC 972

Query: 271  YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN-GIVP 329
             CM G   E    F      G+ PD   Y L+     K +  E    L   M+++ GI P
Sbjct: 973  LCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITP 1032

Query: 330  N 330
            +
Sbjct: 1033 D 1033



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 154/361 (42%), Gaps = 53/361 (14%)

Query: 21  MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME 80
           + K G+ R A  +F  +++ G  PD   YN ++  +     K   + +A+    +M  +E
Sbjct: 480 LAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCY----SKVGEIDEAIKLLSEM--VE 533

Query: 81  RC-KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
            C +P+++  N L+    +A  VD+   +F  + E  L P + TYN ++   GKNG I+E
Sbjct: 534 NCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQE 593

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
              +   M    C P+ ITFN L D   K        ++   +M     P + T+N++I 
Sbjct: 594 AIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIF 653

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFIT-----------------YECIITMYGYCDNV 242
              K     +A   F +M  + Y P F+T                 Y+ I      C   
Sbjct: 654 GLVKNGQVKEAMCFFHQMKKLVY-PDFVTLCTLLPGVVKAGLIEDAYKIIANFLYSC--A 710

Query: 243 SRAREIFDE------LSKLGKDMKVSTLNAML-EAYCMNG----LP-----------TEA 280
            +   +F E      L++ G D  VS    ++    C +G    +P           + A
Sbjct: 711 DQPANLFWEDLMGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSFKHNNASGA 770

Query: 281 DLLFEN-SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK---RFFLE 336
            +LFE  + ++GV P   TY LL     +A+M E+ Q +  +++  G +P+     F L+
Sbjct: 771 RMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLD 830

Query: 337 A 337
           A
Sbjct: 831 A 831



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 121/298 (40%), Gaps = 5/298 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
            +SEM   G  PD   +  L+ A     +  +A AK       M+  +   PN+ TYN L
Sbjct: 352 FWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAK----LDVMRD-QGILPNLHTYNTL 406

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +   +D    +F  +    + P  YTY   +D YGK+G          +MK+   
Sbjct: 407 ICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGI 466

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            P+I+  N  + S  K     + +Q+F  L      P   T+N M+  Y K     +A  
Sbjct: 467 APNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIK 526

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +  +M      P  I    +I      D V  A ++F  + ++     V T N +L    
Sbjct: 527 LLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLG 586

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            NG   EA  LFE     G  P++ T+  L+    K +   L  K+L +M   G VP+
Sbjct: 587 KNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPD 644



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 157/366 (42%), Gaps = 45/366 (12%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           Q+    +T  ++ L   + K  +  LA+ +  +M + GC PD   YN +I   +    K 
Sbjct: 603 QKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLV----KN 658

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQV----------------NA 107
             + +A+ +F +MK +    P+ VT   LL    +A  ++                  N 
Sbjct: 659 GQVKEAMCFFHQMKKL--VYPDFVTLCTLLPGVVKAGLIEDAYKIIANFLYSCADQPANL 716

Query: 108 LFKELHESILA-PDIYTYNGVMDAYGKNGMIKEMESVL---------------SRM---- 147
            +++L  SILA   I       +    NG+ ++ +S+L               +RM    
Sbjct: 717 FWEDLMGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSFKHNNASGARMLFEK 776

Query: 148 --KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
             K    +P + T+NLLI    +    +  + VF  + ++   P + T+N ++  YGK+ 
Sbjct: 777 FTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSG 836

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF-DELSKLGKDMKVSTL 264
              +   ++++M+A +  P+ IT+  +I+      NV  A +++ D +S         T 
Sbjct: 837 KIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTY 896

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
             +++    +G   EA  LFE   + G  P+ + Y +L   + KA   +    L KRM +
Sbjct: 897 GPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVK 956

Query: 325 NGIVPN 330
            G+ P+
Sbjct: 957 EGVRPD 962



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 107/261 (40%), Gaps = 9/261 (3%)

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           TY  + +  +    + Q     +++ E     + Y+YNG++    K+    E   V  RM
Sbjct: 157 TYLTIFKCLSVKGGLRQAPFALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRM 216

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
             +  +P + T++ L+   GKR+  + +  + K +     KP + TF   I   G+A   
Sbjct: 217 ILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKI 276

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            +A  + ++M      P  +TY  +I        +  A+E+F ++          T   +
Sbjct: 277 NEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITL 336

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA-NMKELVQKLLKRMEQNG 326
           L+ +  N      +  +      G  PD  T+ +L  A  KA N  E   K L  M   G
Sbjct: 337 LDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAK-LDVMRDQG 395

Query: 327 IVPNKRFFLEALETFSSSLAG 347
           I+PN       L T+++ + G
Sbjct: 396 ILPN-------LHTYNTLICG 409


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 145/328 (44%), Gaps = 6/328 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y   I    K G+  +A   F+EM + G  P+  +Y ALI  H     K   + +A   F
Sbjct: 524 YGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHC----KEGNVTEAFSVF 579

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + +    R   ++ TY++L+   ++   + +   +F EL E  L P+ +TYN ++    K
Sbjct: 580 RFILS-RRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCK 638

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + +   +L  M      PDI+T+N+LID   K    ++ + +F  +      P   T
Sbjct: 639 QGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVT 698

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + +M+  Y K++    A  + ++M      P    Y  I+      +   +A ++F E+ 
Sbjct: 699 YAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEML 758

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G    VS  N ++E YC +G   EA+ L E        P+  TY  L     KA M  
Sbjct: 759 EKGFASTVS-FNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMG 817

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETF 341
             ++L   M++  ++P  + +   L  +
Sbjct: 818 EAKRLWLEMQERNVMPTAKTYTSLLHGY 845



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 140/324 (43%), Gaps = 11/324 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ L+    K+G+   +  +   MR  G  PD   YN+LI        KAK + +A  Y
Sbjct: 453 VYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFC----KAKRMEEARTY 508

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +M    R +PN  TY   +   ++A  ++  +  F E+    + P++  Y  +++ + 
Sbjct: 509 LMEMLE-RRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHC 567

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G + E  SV   + S +   D+ T+++LI    +     KM + F      +EK  LP
Sbjct: 568 KEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRN---GKMHEAFGIFSELQEKGLLP 624

Query: 193 ---TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T+NS+I    K     KA  + ++M      P  +TY  +I        + RA+ +F
Sbjct: 625 NAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLF 684

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D++   G      T  AM++ YC +  PT A  L E     GV PD+  Y ++     K 
Sbjct: 685 DDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKE 744

Query: 310 NMKELVQKLLKRMEQNGIVPNKRF 333
              E    L + M + G      F
Sbjct: 745 EKFEKALDLFQEMLEKGFASTVSF 768



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 144/352 (40%), Gaps = 30/352 (8%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL-- 66
           A+  I++ L+  + K G+   A+ +  EM   G  PD   Y+ LI  H   ++ A+A   
Sbjct: 344 ANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFEL 403

Query: 67  ----------AKALGYFQKMKGMERC------------------KPNIVTYNILLRACAQ 98
                        L Y   + G+ RC                  KPN V Y  L+ A A+
Sbjct: 404 LDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAK 463

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
              V++   + + + E  + PD++ YN ++  + K   ++E  + L  M   + +P+  T
Sbjct: 464 EGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHT 523

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +   ID Y K    +  ++ F  ++     P +  + ++I  + K     +A  VF+ + 
Sbjct: 524 YGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFIL 583

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           + +      TY  +I        +  A  IF EL + G      T N+++   C  G   
Sbjct: 584 SRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVD 643

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +A  L E     G+ PD  TY +L     KA   E  + L   +E  G+ PN
Sbjct: 644 KASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPN 695



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 160/378 (42%), Gaps = 51/378 (13%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y  LI     + ++R A  +  EM + G +P+P  YNALI   +   D  +A  
Sbjct: 273 VPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQA-- 330

Query: 68  KALGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
                F+    M  C  + N++ +N LL    +A  +++   + +E+ E  + PD  TY+
Sbjct: 331 -----FRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYS 385

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY---GKRQAFDKMEQ----- 177
            +++ + +   +     +L  MK  +  P ++T++++I+     G  Q  + + +     
Sbjct: 386 LLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMN 445

Query: 178 -------VFKSLM--HSKEK------------------PTLPTFNSMIINYGKARLQGKA 210
                  V+ +LM  H+KE                   P +  +NS+II + KA+   +A
Sbjct: 446 GLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEA 505

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
                +M   +  P+  TY   I  Y     +  A   F+E+   G    V    A++E 
Sbjct: 506 RTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEG 565

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +C  G  TEA  +F    +  V  D  TY +L    ++         +   +++ G++PN
Sbjct: 566 HCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPN 625

Query: 331 KRFFLEALETFSSSLAGS 348
                    T++S ++GS
Sbjct: 626 AF-------TYNSLISGS 636



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 141/337 (41%), Gaps = 19/337 (5%)

Query: 24  KGQTRLAMW-LFSEMRNSGCRPDPSVYNALITAH-------------LHTRDKAKALAKA 69
           KG      W +F  M      PD   Y  +I+AH             L   +KA+ L +A
Sbjct: 201 KGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEA 260

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +   + M  KG+    P++ TY+IL+      +   +   +  E+ +  L P+  TYN +
Sbjct: 261 IELKRSMVDKGL---VPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNAL 317

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D + + G I++   +   M +   + ++I +N L++   K    +K  ++ + +M    
Sbjct: 318 IDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGV 377

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P   T++ +I  + + +   +A  +  +M   K  P+ +TY  II     C N+     
Sbjct: 378 EPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNA 437

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           I  E+   G          ++ A+   G   E+ ++ E     G+ PD   Y  L   + 
Sbjct: 438 ILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFC 497

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           KA   E  +  L  M +  + PN   +   ++ +S +
Sbjct: 498 KAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKA 534



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 138/321 (42%), Gaps = 16/321 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI  + K G+   A  LF ++   G  P+   Y A++  +  +++   A    
Sbjct: 660 DIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAA---- 715

Query: 70  LGYFQKMKGM--ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              FQ ++ M      P+   YN++L  C +    ++   LF+E+ E   A  + ++N +
Sbjct: 716 ---FQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTL 771

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++ Y K+G ++E   +L  M   Q  P+ +T+  LID   K     + ++++  +     
Sbjct: 772 IEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNV 831

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            PT  T+ S++  Y       +   +F++M A    P  +TY  +I  Y    NV  A +
Sbjct: 832 MPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACK 891

Query: 248 IFDELSKLGKDMK------VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           + DE+   G  MK      + T + +   + + G   EA  +  +    G   ++++   
Sbjct: 892 LKDEILVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGD 951

Query: 302 LYKAYTKANMKELVQKLLKRM 322
           L          E    LLK+M
Sbjct: 952 LVDGNQNGANSEDSDNLLKQM 972



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 140/326 (42%), Gaps = 29/326 (8%)

Query: 6   WYIADTGIYSKLIAVMGKKGQTRLAMW--LFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           WY    G  S LI  + +   + LA+   +    R+    P+  +++ L+ ++     K 
Sbjct: 116 WY----GPASDLIKCIIRNSDSPLAVLGSIVKCYRSCNGSPNSVIFDMLMDSY----RKM 167

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L +A+  F   K  E  +P++++ N LL    +   V+    +F  +    + PD+YT
Sbjct: 168 GFLVEAVNVFLGPKNFEF-RPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYT 226

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++ A+ K G +K+ + VL  M                    K +  D+  ++ +S++
Sbjct: 227 YTNMISAHCKVGNVKDAKRVLLEMGE------------------KARLLDEAIELKRSMV 268

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                P L T++ +I  +   +   +A+ +  +M  +   P  ITY  +I  +    ++ 
Sbjct: 269 DKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIE 328

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           +A  I DE+   G +  +   N +L   C  G   +A  + +     GV PDS TY LL 
Sbjct: 329 QAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLI 388

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVP 329
           + + +        +LL  M++  + P
Sbjct: 389 EGHCRGQNMARAFELLDEMKKRKLAP 414



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 142/328 (43%), Gaps = 12/328 (3%)

Query: 16  KLIAVMGKKGQT-RLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           +++  MG+K +    A+ L   M + G  PD   Y+ LI      +   +A    L    
Sbjct: 245 RVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMID 304

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
              G+   KP  +TYN L+    +  +++Q   +  E+    +  ++  +N +++   K 
Sbjct: 305 V--GL---KPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKA 359

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G +++   ++  M     +PD  T++LLI+ + + Q   +  ++   +   K  PT+ T+
Sbjct: 360 GKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTY 419

Query: 195 NSMIINYGKAR---LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            S+IIN G  R   LQG    + ++M      P+ + Y  ++T +     V  +R I + 
Sbjct: 420 -SVIIN-GLCRCGNLQG-TNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILER 476

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G    V   N+++  +C      EA           + P++ TY      Y+KA  
Sbjct: 477 MREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGE 536

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALE 339
            E+  +    M   G++PN   +   +E
Sbjct: 537 MEIADRYFNEMLSCGVLPNVGIYTALIE 564


>gi|242054883|ref|XP_002456587.1| hypothetical protein SORBIDRAFT_03g038900 [Sorghum bicolor]
 gi|241928562|gb|EES01707.1| hypothetical protein SORBIDRAFT_03g038900 [Sorghum bicolor]
          Length = 655

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 166/378 (43%), Gaps = 55/378 (14%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT---RDKAKAL 66
           D  ++S LI +  + G    A+ LFS +R +G RPD   YNA + A+  +   RD  + L
Sbjct: 189 DLILFSNLIHLALRGGDAPKALALFSRLRAAGIRPDLKAYNAAVAAYCKSDLIRDAKRLL 248

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHE-SILAPDIYTY 124
                    M   +   P+  TY+ +L A A+  R++  V+ LF  +   + + PD+  +
Sbjct: 249 ------LHDMPA-DGVAPDAETYSPILAALARRGRHLAAVS-LFSHMRAVARVKPDLSVF 300

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N +++AYG+  + +E + +   M+     P ++T+N ++  YG    F +   +F  LM 
Sbjct: 301 NIILNAYGQLDLAREADRLFWSMRRAGVPPSVVTYNTMLRVYGDAGLFGEAVHLF-DLMR 359

Query: 185 SKE----------KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
           S            KP + T+N+MI  YGK+    KA  + Q M A+   P  ITY  I++
Sbjct: 360 SASDGNGGAGSSVKPNVVTYNTMIAIYGKSLEDEKAGKLVQDMQAIGVQPDAITYSTILS 419

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT---------------- 278
           ++     + RA ++F++L + G ++       M+ AY   GL +                
Sbjct: 420 IWVKAGKLDRAAKLFEKLREAGTEIDPVLYQTMVVAYERAGLVSQAKRLLRDLKDPEGIP 479

Query: 279 ---------------EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
                          EA  LF  + N G   DSS ++ +   Y K      V ++   M 
Sbjct: 480 KETAIKILASAGRLEEAAWLFRRAANTGEIKDSSVHRAMMDLYAKNRRHRNVIEVFDEMR 539

Query: 324 QNGIVPNKRFFLEALETF 341
           + G +P+      A+  +
Sbjct: 540 KLGQLPDSETIATAMNAY 557



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 156/340 (45%), Gaps = 16/340 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   YS L+A + + G    A+     M +    PD  +++ LI   L   D 
Sbjct: 147 RERGVTPDAFSYSTLLAALTRAGHLDHALTFLPLMEDDAVAPDLILFSNLIHLALRGGDA 206

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDI 121
            KALA     F +++     +P++  YN  + A C      D    L  ++    +APD 
Sbjct: 207 PKALA----LFSRLRAAG-IRPDLKAYNAAVAAYCKSDLIRDAKRLLLHDMPADGVAPDA 261

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            TY+ ++ A  + G      S+ S M++  + KPD+  FN+++++YG+     + +++F 
Sbjct: 262 ETYSPILAALARRGRHLAAVSLFSHMRAVARVKPDLSVFNIILNAYGQLDLAREADRLFW 321

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---------YTPSFITYEC 231
           S+  +   P++ T+N+M+  YG A L G+A ++F  M +             P+ +TY  
Sbjct: 322 SMRRAGVPPSVVTYNTMLRVYGDAGLFGEAVHLFDLMRSASDGNGGAGSSVKPNVVTYNT 381

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           +I +YG      +A ++  ++  +G      T + +L  +   G    A  LFE     G
Sbjct: 382 MIAIYGKSLEDEKAGKLVQDMQAIGVQPDAITYSTILSIWVKAGKLDRAAKLFEKLREAG 441

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
              D   Y+ +  AY +A +    ++LL+ ++    +P +
Sbjct: 442 TEIDPVLYQTMVVAYERAGLVSQAKRLLRDLKDPEGIPKE 481



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 2/227 (0%)

Query: 87  VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 146
           + YN+LLR+  +A ++   + L  E+ E  + PD ++Y+ ++ A  + G +    + L  
Sbjct: 121 IPYNLLLRSSCRAGDLRLASGLLLEMRERGVTPDAFSYSTLLAALTRAGHLDHALTFLPL 180

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           M+ +   PD+I F+ LI    +     K   +F  L  +  +P L  +N+ +  Y K+ L
Sbjct: 181 MEDDAVAPDLILFSNLIHLALRGGDAPKALALFSRLRAAGIRPDLKAYNAAVAAYCKSDL 240

Query: 207 QGKAE-YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK-DMKVSTL 264
              A+  +   M A    P   TY  I+           A  +F  +  + +    +S  
Sbjct: 241 IRDAKRLLLHDMPADGVAPDAETYSPILAALARRGRHLAAVSLFSHMRAVARVKPDLSVF 300

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           N +L AY    L  EAD LF +    GV P   TY  + + Y  A +
Sbjct: 301 NIILNAYGQLDLAREADRLFWSMRRAGVPPSVVTYNTMLRVYGDAGL 347



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 80/173 (46%), Gaps = 9/173 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS ++++  K G+   A  LF ++R +G   DP +Y  ++ A+    ++A  +++A
Sbjct: 410 DAITYSTILSIWVKAGKLDRAAKLFEKLREAGTEIDPVLYQTMVVAY----ERAGLVSQA 465

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               + +K      P  +     ++  A A  +++   LF+    +    D   +  +MD
Sbjct: 466 KRLLRDLK-----DPEGIPKETAIKILASAGRLEEAAWLFRRAANTGEIKDSSVHRAMMD 520

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            Y KN   + +  V   M+     PD  T    +++YGK + FDK   +++++
Sbjct: 521 LYAKNRRHRNVIEVFDEMRKLGQLPDSETIATAMNAYGKLKDFDKAAALYQAM 573


>gi|414888268|tpg|DAA64282.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 868

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 161/414 (38%), Gaps = 74/414 (17%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRL------------------------------- 29
           MQ+Q W   D  I++ +I V+G++G   L                               
Sbjct: 129 MQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPAESRTALSYTSLIAAYARNA 188

Query: 30  ----AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMK--GMERCK 83
               A  L  +M+ +G  P  + YN ++ A     D        LG F +M+       +
Sbjct: 189 LHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDASPSVR 248

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG-------M 136
           P++ TYN LL A A     DQ   L   + E+ ++PD  +Y  ++DA+   G       +
Sbjct: 249 PDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAFASAGNLSRAAEL 308

Query: 137 IKEMES----------------------------VLSRMKSNQCKPDIITFNLLIDSYGK 168
             EM +                            VL +M+++ C P   T+ +L+D YG+
Sbjct: 309 FSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPTAATYRVLLDLYGR 368

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
           +  FD + Q+F+  M +   P   T+N +   +G      +   +F  M      P  +T
Sbjct: 369 QGRFDGVRQLFRE-MRTAVPPDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVT 427

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
            E ++   G+      ARE+ + +++ G          ++EA     +  EA + F    
Sbjct: 428 CENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMT 487

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN-GIVPNKRFFLEALETF 341
            +G  P   TY  L  AY +  + +  + +  RM  N GI  +K  F   +E +
Sbjct: 488 EIGSLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAY 541



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 133/322 (41%), Gaps = 7/322 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  Y  ++      G    A  LFSEM  +G   D S Y  L+ AH     +  A A A
Sbjct: 285 DTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHT----RVGATADA 340

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +   ++M+  + C P   TY +LL    +    D V  LF+E+  ++  PD  TYN +  
Sbjct: 341 VAVLRQMQA-DGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTAV-PPDTATYNVLFR 398

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +G  G  KE+  +   M     +PD++T   ++ + G         +V + +      P
Sbjct: 399 VFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVP 458

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           T   +  ++   G A +  +A   F  MT +   P+  TY  +   Y        A  IF
Sbjct: 459 TADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQEAEAIF 518

Query: 250 DELS-KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             +S   G      + +A++EAYC      +A   +         PD  + + +  AY  
Sbjct: 519 SRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCI 578

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
           A + +  ++  + ++ +  +P+
Sbjct: 579 AGVIDESKEQFEELQSSVTMPS 600



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 133/301 (44%), Gaps = 27/301 (8%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARN--VDQVNALFKEL-HESILAPDIYTY 124
           ++L  F+ M+    C+P+   + I++    +     +D+   +F +L  ES  A    +Y
Sbjct: 121 RSLRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPAESRTA---LSY 177

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ----AFDKMEQVFK 180
             ++ AY +N + +E  ++L +MK+    P   T+N ++ +  +       FD +  +F 
Sbjct: 178 TSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLGLFA 237

Query: 181 SLMHSKE---KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
            + H      +P L T+N+++       L  ++E +   M     +P  ++Y  I+  + 
Sbjct: 238 EMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAFA 297

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
              N+SRA E+F E++  G     S    ++EA+   G   +A  +       G  P ++
Sbjct: 298 SAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPTAA 357

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR-------------FFLEALETFSSS 344
           TY++L   Y +    + V++L + M +  + P+               FF E +E F   
Sbjct: 358 TYRVLLDLYGRQGRFDGVRQLFREM-RTAVPPDTATYNVLFRVFGDGGFFKEVVELFHDM 416

Query: 345 L 345
           L
Sbjct: 417 L 417



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/244 (20%), Positives = 98/244 (40%), Gaps = 5/244 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  +G       A   F+ M   G  P    YNAL  A+     +     +A   F
Sbjct: 463 YTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYA----RGGLFQEAEAIF 518

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M      + +  +++ L+ A  Q   +D     + E+ +S   PD  +  GV++AY  
Sbjct: 519 SRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCI 578

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G+I E +     ++S+   P +I + +++  Y +   +     + + +  ++   T   
Sbjct: 579 AGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQV 638

Query: 194 FNSMIIN-YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
             S+I   Y  +      EYV +  T      SF  +  ++ +  +     RA  + D+ 
Sbjct: 639 IASLIKGEYDDSSNWQMVEYVLENSTMEGCDYSFRFFNALLGVLWWFGQKGRAARVLDQA 698

Query: 253 SKLG 256
            K G
Sbjct: 699 VKFG 702



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 84/209 (40%), Gaps = 34/209 (16%)

Query: 148 KSNQCKPDIITFNLLIDSYGKRQA--FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
           + + C+PD     ++I   G++     DK  +VF  L    E  T  ++ S+I  Y +  
Sbjct: 131 RQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDL--PAESRTALSYTSLIAAYARNA 188

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
           L  +A  +  +M A    P+  TY  ++     C   +     FD L  L  +M+     
Sbjct: 189 LHEEARALLDQMKATGVAPTAATYNTVLAA---CARATDPPVPFDMLLGLFAEMR----- 240

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
                               +  +  V PD +TY  L  A    ++ +  + LL  M + 
Sbjct: 241 --------------------HDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEA 280

Query: 326 GIVPNKRFFLEALETFSSSLAGSQSGSAK 354
           G+ P+   +   ++ F+S  AG+ S +A+
Sbjct: 281 GVSPDTVSYRHIVDAFAS--AGNLSRAAE 307


>gi|168012346|ref|XP_001758863.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690000|gb|EDQ76369.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 367

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 149/318 (46%), Gaps = 4/318 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ +I    +KG  + A  ++ +M  SG + D    + L++    T+   +   K    F
Sbjct: 48  FNSMIGAYARKGLFKKAWRMYEDMVESGIQADEITLSTLLSGVGKTQLPVETAEK---IF 104

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+K      P + TYN LL   ++  + ++   L  E+    + P+I T+N ++  + +
Sbjct: 105 SKIK-ENGILPRVETYNTLLSVLSRGGHTERCKELEIEMQRLEVVPNIITFNTLLMMHVQ 163

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +KE   V  R+     KP ++T+  L+  Y +     +  +VF  +     KP L  
Sbjct: 164 GGRLKEAAEVYQRILDAGLKPTVVTYTGLVQMYCRASKHKEAIEVFLEMRRVGCKPDLMI 223

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           ++ MI  YGKA    +A  VF+++    Y P+ +T+ C+I  +G+   +      F+E+ 
Sbjct: 224 YSLMISVYGKAGSAEEAALVFRQLQNDGYIPNVVTWCCLIQAFGWQGKMQEIGAFFNEML 283

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    ++  N M+ AY   G   +A +LF      G++P++ +Y  + +AY  +    
Sbjct: 284 ASGCLPDLTLYNVMMGAYGRYGHSVQAAILFRRMQAQGISPNAVSYDTMIQAYCHSKQAA 343

Query: 314 LVQKLLKRMEQNGIVPNK 331
             Q +L +M + G  P++
Sbjct: 344 DAQIVLDQMTRAGFSPDR 361



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 159/350 (45%), Gaps = 10/350 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ ++ V+G+ G T  A  LF EM +SG       +N++I A+     +     KA   +
Sbjct: 13  YTLVLGVLGRAGLTIQARELFDEMLSSGVEVGLHSFNSMIGAY----ARKGLFKKAWRMY 68

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAPDIYTYNGVMDA 130
           + M   G++    + +T + LL    + +  V+    +F ++ E+ + P + TYN ++  
Sbjct: 69  EDMVESGIQ---ADEITLSTLLSGVGKTQLPVETAEKIFSKIKENGILPRVETYNTLLSV 125

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             + G  +  + +   M+  +  P+IITFN L+  + +     +  +V++ ++ +  KPT
Sbjct: 126 LSRGGHTERCKELEIEMQRLEVVPNIITFNTLLMMHVQGGRLKEAAEVYQRILDAGLKPT 185

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           + T+  ++  Y +A    +A  VF +M  +   P  + Y  +I++YG   +   A  +F 
Sbjct: 186 VVTYTGLVQMYCRASKHKEAIEVFLEMRRVGCKPDLMIYSLMISVYGKAGSAEEAALVFR 245

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           +L   G    V T   +++A+   G   E    F      G  PD + Y ++  AY +  
Sbjct: 246 QLQNDGYIPNVVTWCCLIQAFGWQGKMQEIGAFFNEMLASGCLPDLTLYNVMMGAYGRYG 305

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRS 360
                  L +RM+  GI PN   +   ++ +  S   + +      +TR+
Sbjct: 306 HSVQAAILFRRMQAQGISPNAVSYDTMIQAYCHSKQAADAQIVLDQMTRA 355



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 142/304 (46%), Gaps = 24/304 (7%)

Query: 9   ADTGIYSKLIAVMGK-KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           AD    S L++ +GK +     A  +FS+++ +G  P    YN L++           L+
Sbjct: 78  ADEITLSTLLSGVGKTQLPVETAEKIFSKIKENGILPRVETYNTLLSV----------LS 127

Query: 68  KALGYFQKMKGME------RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           +  G+ ++ K +E         PNI+T+N LL    Q   + +   +++ + ++ L P +
Sbjct: 128 RG-GHTERCKELEIEMQRLEVVPNIITFNTLLMMHVQGGRLKEAAEVYQRILDAGLKPTV 186

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TY G++  Y +    KE   V   M+   CKPD++ ++L+I  YGK  + ++   VF+ 
Sbjct: 187 VTYTGLVQMYCRASKHKEAIEVFLEMRRVGCKPDLMIYSLMISVYGKAGSAEEAALVFRQ 246

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYV---FQKMTAMKYTPSFITYECIITMYGY 238
           L +    P + T+  +I  +G    QGK + +   F +M A    P    Y  ++  YG 
Sbjct: 247 LQNDGYIPNVVTWCCLIQAFG---WQGKMQEIGAFFNEMLASGCLPDLTLYNVMMGAYGR 303

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             +  +A  +F  +   G      + + M++AYC +    +A ++ +     G +PD S+
Sbjct: 304 YGHSVQAAILFRRMQAQGISPNAVSYDTMIQAYCHSKQAADAQIVLDQMTRAGFSPDRSS 363

Query: 299 YKLL 302
             +L
Sbjct: 364 RAML 367



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 116/251 (46%), Gaps = 1/251 (0%)

Query: 81  RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140
           R KPN  TY ++L    +A    Q   LF E+  S +   ++++N ++ AY + G+ K+ 
Sbjct: 5   RLKPNGHTYTLVLGVLGRAGLTIQARELFDEMLSSGVEVGLHSFNSMIGAYARKGLFKKA 64

Query: 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQ-AFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
             +   M  +  + D IT + L+   GK Q   +  E++F  +  +   P + T+N+++ 
Sbjct: 65  WRMYEDMVESGIQADEITLSTLLSGVGKTQLPVETAEKIFSKIKENGILPRVETYNTLLS 124

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
              +     + + +  +M  ++  P+ IT+  ++ M+     +  A E++  +   G   
Sbjct: 125 VLSRGGHTERCKELEIEMQRLEVVPNIITFNTLLMMHVQGGRLKEAAEVYQRILDAGLKP 184

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            V T   +++ YC      EA  +F     +G  PD   Y L+   Y KA   E    + 
Sbjct: 185 TVVTYTGLVQMYCRASKHKEAIEVFLEMRRVGCKPDLMIYSLMISVYGKAGSAEEAALVF 244

Query: 320 KRMEQNGIVPN 330
           ++++ +G +PN
Sbjct: 245 RQLQNDGYIPN 255



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 89/221 (40%), Gaps = 38/221 (17%)

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           ++  + KP+  T+ L++   G+     +  ++F  ++ S  +  L +FNSMI  Y +  L
Sbjct: 1   VQKGRLKPNGHTYTLVLGVLGRAGLTIQARELFDEMLSSGVEVGLHSFNSMIGAYARKGL 60

Query: 207 QGK------------------------------------AEYVFQKMTAMKYTPSFITYE 230
             K                                    AE +F K+      P   TY 
Sbjct: 61  FKKAWRMYEDMVESGIQADEITLSTLLSGVGKTQLPVETAEKIFSKIKENGILPRVETYN 120

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
            ++++     +  R +E+  E+ +L     + T N +L  +   G   EA  +++   + 
Sbjct: 121 TLLSVLSRGGHTERCKELEIEMQRLEVVPNIITFNTLLMMHVQGGRLKEAAEVYQRILDA 180

Query: 291 GVTPDSSTYKLLYKAYTKAN-MKELVQKLLKRMEQNGIVPN 330
           G+ P   TY  L + Y +A+  KE ++  L+ M + G  P+
Sbjct: 181 GLKPTVVTYTGLVQMYCRASKHKEAIEVFLE-MRRVGCKPD 220



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 5/114 (4%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           YI +   +  LI   G +G+ +     F+EM  SGC PD ++YN ++ A+       +A 
Sbjct: 252 YIPNVVTWCCLIQAFGWQGKMQEIGAFFNEMLASGCLPDLTLYNVMMGAYGRYGHSVQAA 311

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
                 F++M+  +   PN V+Y+ +++A   ++       +  ++  +  +PD
Sbjct: 312 I----LFRRMQA-QGISPNAVSYDTMIQAYCHSKQAADAQIVLDQMTRAGFSPD 360


>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
 gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
          Length = 1039

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 141/321 (43%), Gaps = 6/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT   + L+    + G  R A WL   M   GCR +   Y  LI     TR   +AL   
Sbjct: 217 DTYTCNALLLGYCRTGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLL 276

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L   Q     + C PN+ TY +L+R   +   +     L  E+    + P ++TYN ++D
Sbjct: 277 LMMLQ-----DGCSPNLHTYTLLIRGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMID 331

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y K+G +K+   + + M+ N C PD  T+N LI      +  D+ E++    +     P
Sbjct: 332 GYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIHGLCGGKP-DEAEELLNGAIARGFSP 390

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           T+ TF ++I  Y KA     A  V   M + K       Y  +I++      +  A++  
Sbjct: 391 TVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGVLISVLIKKHRLKEAKDTL 450

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +E+   G    V    ++++AYC  G    A  +F+ + + G  P++ TY  L     + 
Sbjct: 451 NEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIYGLIQD 510

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
                   L+ +M+++GI P 
Sbjct: 511 QKLHKAMALITKMQEDGITPG 531



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 133/317 (41%), Gaps = 24/317 (7%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+    K G T  A  L  +M N GC+ D   Y+ L+ A      K K L +AL   
Sbjct: 602 YTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALC----KQKKLNEALSIL 657

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M  +   K NIV Y I++    +    D   ++F E+  S   P   TY   + +Y K
Sbjct: 658 DQMT-LRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCK 716

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G I+E   ++  M+ N   PD++T+N+ I+  G     D      K ++ +  +P   T
Sbjct: 717 IGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCAFSTLKRMIDASCEPNYWT 776

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +  ++ ++ K  L   A YV         T     +  + T++          ++ + + 
Sbjct: 777 YWLLLKHFLKMSL-ANAHYVD--------TSGMWNWIKLDTVW----------QLLERMV 817

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           K G +    T ++++  +C      EA +L ++     ++P+   Y +L K      + E
Sbjct: 818 KHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFE 877

Query: 314 LVQKLLKRMEQNGIVPN 330
                +  M + G  P+
Sbjct: 878 KAASFVTNMIECGFQPH 894



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 140/332 (42%), Gaps = 27/332 (8%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR-DK 62
           +R  +     Y+ +I    K G+ + A+ + + M  +GC PD   YN+LI      + D+
Sbjct: 316 RRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIHGLCGGKPDE 375

Query: 63  AKAL---AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
           A+ L   A A G+           P ++T+  ++    +A  +D    +   +  S    
Sbjct: 376 AEELLNGAIARGF----------SPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKL 425

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D+  Y  ++    K   +KE +  L+ + +N   P+++ +  +ID+Y K        +VF
Sbjct: 426 DLQAYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVF 485

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           K   H   +P   T++S+I    + +   KA  +  KM     TP  ITY  +I   G C
Sbjct: 486 KLTEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQ--GQC 543

Query: 240 -----DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
                DN  R   +F+ + + G        N + +A C +G   EA   +      GV  
Sbjct: 544 KKHEFDNAFR---LFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEA---YSFLVKKGVVL 597

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
              TY  L   ++KA   E    L+++M   G
Sbjct: 598 TKVTYTSLVDGFSKAGNTEFAAALIEKMVNEG 629



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 138/350 (39%), Gaps = 66/350 (18%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    KK +   A  LF  M  +G  PD   YN L  A   +    +A +     F
Sbjct: 535 YTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYS-----F 589

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
              KG+   K   VTY  L+   ++A N +   AL +++       D +TY+ ++ A  K
Sbjct: 590 LVKKGVVLTK---VTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCK 646

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              + E  S+L +M     K +I+ + ++I    K    D  + +F  ++ S  KP+  T
Sbjct: 647 QKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAIT 706

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +   I +Y K     +A ++  +M      P  +TY   I   G+   +           
Sbjct: 707 YTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYM----------- 755

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK- 312
               D   STL  M++A C                     P+  TY LL K + K ++  
Sbjct: 756 ----DCAFSTLKRMIDASC--------------------EPNYWTYWLLLKHFLKMSLAN 791

Query: 313 ---------------ELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
                          + V +LL+RM ++G+ P          T+SS +AG
Sbjct: 792 AHYVDTSGMWNWIKLDTVWQLLERMVKHGLNPTA-------VTYSSIIAG 834



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 94/226 (41%), Gaps = 1/226 (0%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+ VTYN ++ A  +  ++   +  F+ L ES +  D YT N ++  Y + G +++   +
Sbjct: 181 PDTVTYNTMIMAYCKEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYCRTGDLRKACWL 240

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L  M    C+ +  ++ +LI    + +   +   +   ++     P L T+  +I    K
Sbjct: 241 LMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCK 300

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
                 A  +  +M      PS  TY  +I  Y     +  A  I   +   G +    T
Sbjct: 301 EGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWT 360

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            N+++   C  G P EA+ L   +   G +P   T+  +   Y KA
Sbjct: 361 YNSLIHGLC-GGKPDEAEELLNGAIARGFSPTVITFTNIINGYCKA 405



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 49/118 (41%)

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           ++ ++      P  +TY  +I  Y    +++ A   F  L + G +M   T NA+L  YC
Sbjct: 170 LYSQLVQEGLLPDTVTYNTMIMAYCKEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYC 229

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             G   +A  L      MG   +  +Y +L +   +         LL  M Q+G  PN
Sbjct: 230 RTGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLLMMLQDGCSPN 287


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 145/321 (45%), Gaps = 9/321 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D  IY+ +I    + G    A+ +  EM   GC PD   YN L+        K + L 
Sbjct: 267 VPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLC----KERRLL 322

Query: 68  KALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            A G   +M+  ER   P++ T+  L+        +D+   LF  +    L PDI TYN 
Sbjct: 323 DAEGLLNEMR--ERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNT 380

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++D   + G + +   +   M S +  P+ +T+++LIDS+ ++   +        +++  
Sbjct: 381 LIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKG 440

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P + T+NS+I  Y ++    K +   QKM   K +P  ITY  +I  Y   D +  A 
Sbjct: 441 ILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAF 500

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           ++ + + K      V T N ++  + ++G   EA  +FE     G+ PD  TY  +   +
Sbjct: 501 KLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGH 560

Query: 307 -TKANMKELVQKLLKRMEQNG 326
            T  N KE  Q L   M Q G
Sbjct: 561 VTAGNSKEAFQ-LHDEMLQRG 580



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 152/335 (45%), Gaps = 17/335 (5%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R    D   +S LI +  ++G+   AM    EMR  G  PD  +Y  +I        +
Sbjct: 227 RHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFC----R 282

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A  ++ AL    +M G   C P++VTYN LL    + R +     L  E+ E  + PD+ 
Sbjct: 283 AGLMSDALRVRDEMVGCG-CLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLC 341

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           T+  ++  Y   G + +   +   M + + +PDI+T+N LID   ++   DK   ++   
Sbjct: 342 TFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDD- 400

Query: 183 MHSKEK-PTLPTFNSMIINYGKARLQGKAEYVF---QKMTAMKYTPSFITYECIITMYGY 238
           MHS+E  P   T++ +I ++ +   +G+ E  F    +M      P+ +TY  II  Y  
Sbjct: 401 MHSREIFPNHVTYSILIDSHCE---KGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCR 457

Query: 239 CDNVSRAREIFDEL--SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
             NVS+ ++   ++  +K+  D+   T N ++  Y       +A  L        V PD 
Sbjct: 458 SGNVSKGQKFLQKMMVNKVSPDL--ITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDV 515

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
            TY +L   ++     +    + ++M   GI P++
Sbjct: 516 VTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDR 550



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 148/324 (45%), Gaps = 11/324 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ LI    + G+   A+ ++ EMR+ G +PD   ++ LI      R K   +  A
Sbjct: 199 DVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLI-GLFARRGK---MDHA 254

Query: 70  LGYFQKMKGMERC---KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           + Y ++M    RC    P+ V Y +++    +A  +     +  E+      PD+ TYN 
Sbjct: 255 MAYLREM----RCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNT 310

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++   K   + + E +L+ M+     PD+ TF  LI  Y      DK  Q+F ++++ +
Sbjct: 311 LLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQR 370

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + T+N++I    +     KA  ++  M + +  P+ +TY  +I  +     V  A 
Sbjct: 371 LRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAF 430

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
              DE+   G    + T N++++ YC +G  ++     +      V+PD  TY  L   Y
Sbjct: 431 GFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGY 490

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K +      KLL  ME+  + P+
Sbjct: 491 IKEDKMHDAFKLLNMMEKEKVQPD 514



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 123/261 (47%), Gaps = 11/261 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   ++ LI     +G+   A+ LF  M N   RPD   YN LI       D 
Sbjct: 332 RERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGD- 390

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L KA   +  M   E   PN VTY+IL+ +  +   V+       E+    + P+I 
Sbjct: 391 ---LDKANDLWDDMHSRE-IFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIM 446

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++  Y ++G + + +  L +M  N+  PD+IT+N LI  Y K    DKM   FK L
Sbjct: 447 TYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKE---DKMHDAFKLL 503

Query: 183 -MHSKEK--PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
            M  KEK  P + T+N +I  +       +A ++F+KM A    P   TY  +I  +   
Sbjct: 504 NMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTA 563

Query: 240 DNVSRAREIFDELSKLGKDMK 260
            N   A ++ DE+ + GK+ +
Sbjct: 564 GNSKEAFQLHDEMLQRGKEKR 584



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 140/314 (44%), Gaps = 14/314 (4%)

Query: 24  KGQTRLAMW-----LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKG 78
           KG  R  MW     +F EM + G  PD   +  LI        +   + +AL  +++M+ 
Sbjct: 173 KGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFC----RVGEIEEALKIYKEMR- 227

Query: 79  MERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIK 138
               KP++V+++ L+   A+   +D   A  +E+    L PD   Y  V+  + + G++ 
Sbjct: 228 HRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMS 287

Query: 139 EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 198
           +   V   M    C PD++T+N L++   K +     E +   +      P L TF ++I
Sbjct: 288 DALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLI 347

Query: 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLG 256
             Y       KA  +F  M   +  P  +TY  +I   G C   ++ +A +++D++    
Sbjct: 348 HGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLID--GMCRQGDLDKANDLWDDMHSRE 405

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
                 T + +++++C  G   +A    +   N G+ P+  TY  + K Y ++      Q
Sbjct: 406 IFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQ 465

Query: 317 KLLKRMEQNGIVPN 330
           K L++M  N + P+
Sbjct: 466 KFLQKMMVNKVSPD 479



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 108/251 (43%), Gaps = 3/251 (1%)

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCK-PNIVTYNILLRACAQARNVDQVNALFKELHES 115
           +H   KA    K      +M+  +RC  P++VT+N+++ A  +A + +   AL   +   
Sbjct: 102 VHNYCKALEFDKVDAVISEME--KRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSK 159

Query: 116 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 175
            L P I TYN V+    ++GM  +   V   M      PD+ +F +LI  + +    ++ 
Sbjct: 160 GLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEA 219

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
            +++K + H   KP L +F+ +I  + +      A    ++M      P  + Y  +I  
Sbjct: 220 LKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGG 279

Query: 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           +     +S A  + DE+   G    V T N +L   C      +A+ L       GV PD
Sbjct: 280 FCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPD 339

Query: 296 SSTYKLLYKAY 306
             T+  L   Y
Sbjct: 340 LCTFTTLIHGY 350



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/209 (19%), Positives = 92/209 (44%)

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           YT N ++  Y K     ++++V+S M+     PD++T N+++D+  +    +    +  S
Sbjct: 96  YTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDS 155

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++    KP + T+NS++    ++ +  KA  VF++M      P   ++  +I  +     
Sbjct: 156 MVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGE 215

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +  A +I+ E+   G    + + + ++  +   G    A          G+ PD   Y +
Sbjct: 216 IEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTM 275

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +   + +A +     ++   M   G +P+
Sbjct: 276 VIGGFCRAGLMSDALRVRDEMVGCGCLPD 304



 Score = 38.1 bits (87), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 228 TYECIITMYGYCDNV--SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
           TY   I ++ YC  +   +   +  E+ K      V T N M++A    G    A  L +
Sbjct: 95  TYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVD 154

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           +  + G+ P   TY  + K   ++ M +   ++ K M+  G+ P+ R F
Sbjct: 155 SMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSF 203


>gi|168062855|ref|XP_001783392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665090|gb|EDQ51786.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 540

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 147/319 (46%), Gaps = 9/319 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I      G+ + A   FS+M+  GC PD  +YN LI  +     K    ++A
Sbjct: 58  DIKFYALVIKEAINTGRFQTAQHWFSKMKLLGCPPDIVIYNILILEY----GKRGNFSQA 113

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           + YF ++K  E   P+  TY  +L AC +  N+D+ N   KE+ E+ + PD   Y+ ++D
Sbjct: 114 MKYFSQLKD-EGLLPDSGTYCAVLSACRKVGNIDKGNETLKEMREAGIKPDQVAYSILID 172

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS--KE 187
            +GK G  ++  +    ++ +   PD + +N LI ++ K    D+   VFK    S   +
Sbjct: 173 MFGKAGRHEDAAATFRELQMSGYLPDSVAYNTLIHAFAKVGMVDQATLVFKEAQRSFCLD 232

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P +  F +MI  Y KAR+  +A +V + M  +   P+ + Y  ++  +   +    A +
Sbjct: 233 DPVI--FYTMIQVYAKARMADQALHVLKLMKEIGLQPNELGYGSVLNAFMRANQPMGAIK 290

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F+E+ +       ST   ML  Y   G  + A+ L      +G   +   Y  L   Y 
Sbjct: 291 LFEEMQESNCRFGESTYITMLNVYSKAGFHSAAEELLAKMRQLGFRRNVVAYSTLIDMYG 350

Query: 308 KANMKELVQKLLKRMEQNG 326
           K    +   +L   M+Q G
Sbjct: 351 KVGKLQEATRLFSTMKQQG 369



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 149/355 (41%), Gaps = 44/355 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLHTRDKAKALA 67
           D  IY+ LI   GK+G    AM  FS++++ G  PD   Y A+++A   +   DK     
Sbjct: 93  DIVIYNILILEYGKRGNFSQAMKYFSQLKDEGLLPDSGTYCAVLSACRKVGNIDKGNETL 152

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           K +    +  G+   KP+ V Y+IL+    +A   +   A F+EL  S   PD   YN +
Sbjct: 153 KEM----REAGI---KPDQVAYSILIDMFGKAGRHEDAAATFRELQMSGYLPDSVAYNTL 205

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK------- 180
           + A+ K GM+ +   V    + + C  D + F  +I  Y K +  D+   V K       
Sbjct: 206 IHAFAKVGMVDQATLVFKEAQRSFCLDDPVIFYTMIQVYAKARMADQALHVLKLMKEIGL 265

Query: 181 --------SLMHSKEKPTLP--------------------TFNSMIINYGKARLQGKAEY 212
                   S++++  +   P                    T+ +M+  Y KA     AE 
Sbjct: 266 QPNELGYGSVLNAFMRANQPMGAIKLFEEMQESNCRFGESTYITMLNVYSKAGFHSAAEE 325

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +  KM  + +  + + Y  +I MYG    +  A  +F  + + G    +   N ML+ Y 
Sbjct: 326 LLAKMRQLGFRRNVVAYSTLIDMYGKVGKLQEATRLFSTMKQQGCKGNLIVYNTMLDMYG 385

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
             G   +A+ L     +  + PD+ TY  L  AY +    E   ++ ++   +G+
Sbjct: 386 KAGRINDAERLMAELKDSKLVPDTVTYTTLINAYNRLGRFEECIRVFEQHRADGL 440



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 127/308 (41%), Gaps = 10/308 (3%)

Query: 28  RLAMW-----LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82
           R+  W     L  EM    C PD   Y  +I   ++T         A  +F KMK +  C
Sbjct: 36  RVQKWVALEILVDEMIGKNCPPDIKFYALVIKEAINT----GRFQTAQHWFSKMK-LLGC 90

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
            P+IV YNIL+    +  N  Q    F +L +  L PD  TY  V+ A  K G I +   
Sbjct: 91  PPDIVIYNILILEYGKRGNFSQAMKYFSQLKDEGLLPDSGTYCAVLSACRKVGNIDKGNE 150

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
            L  M+    KPD + +++LID +GK    +     F+ L  S   P    +N++I  + 
Sbjct: 151 TLKEMREAGIKPDQVAYSILIDMFGKAGRHEDAAATFRELQMSGYLPDSVAYNTLIHAFA 210

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           K  +  +A  VF++          + +  +I +Y       +A  +   + ++G      
Sbjct: 211 KVGMVDQATLVFKEAQRSFCLDDPVIFYTMIQVYAKARMADQALHVLKLMKEIGLQPNEL 270

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
              ++L A+     P  A  LFE           STY  +   Y+KA      ++LL +M
Sbjct: 271 GYGSVLNAFMRANQPMGAIKLFEEMQESNCRFGESTYITMLNVYSKAGFHSAAEELLAKM 330

Query: 323 EQNGIVPN 330
            Q G   N
Sbjct: 331 RQLGFRRN 338



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 143/337 (42%), Gaps = 9/337 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI + GK G+   A   F E++ SG  PD   YN LI    H   K   + +A
Sbjct: 163 DQVAYSILIDMFGKAGRHEDAAATFRELQMSGYLPDSVAYNTLI----HAFAKVGMVDQA 218

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F++ +    C  + V +  +++  A+AR  DQ   + K + E  L P+   Y  V++
Sbjct: 219 TLVFKEAQ-RSFCLDDPVIFYTMIQVYAKARMADQALHVLKLMKEIGLQPNELGYGSVLN 277

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A+ +         +   M+ + C+    T+  +++ Y K       E++   +     + 
Sbjct: 278 AFMRANQPMGAIKLFEEMQESNCRFGESTYITMLNVYSKAGFHSAAEELLAKMRQLGFRR 337

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  ++++I  YGK     +A  +F  M       + I Y  ++ MYG    ++ A  + 
Sbjct: 338 NVVAYSTLIDMYGKVGKLQEATRLFSTMKQQGCKGNLIVYNTMLDMYGKAGRINDAERLM 397

Query: 250 DEL--SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
            EL  SKL  D    T   ++ AY   G   E   +FE     G+  D     ++   Y 
Sbjct: 398 AELKDSKLVPD--TVTYTTLINAYNRLGRFEECIRVFEQHRADGLKLDRILVAIMINVYG 455

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           KA     + +LL+ M ++GI P+ R     +E +   
Sbjct: 456 KARQYSKLAELLEVMPKSGIQPDTRILKTVVEIYEDG 492



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 136/329 (41%), Gaps = 40/329 (12%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y+ D+  Y+ LI    K G    A  +F E + S C  DP ++  +I  +     KA+  
Sbjct: 195 YLPDSVAYNTLIHAFAKVGMVDQATLVFKEAQRSFCLDDPVIFYTMIQVYA----KARMA 250

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES----------- 115
            +AL   + MK +   +PN + Y  +L A  +A        LF+E+ ES           
Sbjct: 251 DQALHVLKLMKEIG-LQPNELGYGSVLNAFMRANQPMGAIKLFEEMQESNCRFGESTYIT 309

Query: 116 ----------------ILAP--------DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151
                           +LA         ++  Y+ ++D YGK G ++E   + S MK   
Sbjct: 310 MLNVYSKAGFHSAAEELLAKMRQLGFRRNVVAYSTLIDMYGKVGKLQEATRLFSTMKQQG 369

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
           CK ++I +N ++D YGK    +  E++   L  SK  P   T+ ++I  Y +     +  
Sbjct: 370 CKGNLIVYNTMLDMYGKAGRINDAERLMAELKDSKLVPDTVTYTTLINAYNRLGRFEECI 429

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
            VF++  A       I    +I +YG     S+  E+ + + K G       L  ++E Y
Sbjct: 430 RVFEQHRADGLKLDRILVAIMINVYGKARQYSKLAELLEVMPKSGIQPDTRILKTVVEIY 489

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYK 300
              G+   A  L    + +G    ++ +K
Sbjct: 490 EDGGMCENAAELLRKINELGPLEGNTLHK 518



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 109/270 (40%)

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           +++ +K  +  +P+   Y        + +    +  L  E+      PDI  Y  V+   
Sbjct: 10  FYKWVKSQDGFEPHFHLYVAFAHCLMRVQKWVALEILVDEMIGKNCPPDIKFYALVIKEA 69

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
              G  +  +   S+MK   C PDI+ +N+LI  YGKR  F +  + F  L      P  
Sbjct: 70  INTGRFQTAQHWFSKMKLLGCPPDIVIYNILILEYGKRGNFSQAMKYFSQLKDEGLLPDS 129

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+ +++    K     K     ++M      P  + Y  +I M+G       A   F E
Sbjct: 130 GTYCAVLSACRKVGNIDKGNETLKEMREAGIKPDQVAYSILIDMFGKAGRHEDAAATFRE 189

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           L   G        N ++ A+   G+  +A L+F+ +       D   +  + + Y KA M
Sbjct: 190 LQMSGYLPDSVAYNTLIHAFAKVGMVDQATLVFKEAQRSFCLDDPVIFYTMIQVYAKARM 249

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            +    +LK M++ G+ PN+  +   L  F
Sbjct: 250 ADQALHVLKLMKEIGLQPNELGYGSVLNAF 279



 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 3/168 (1%)

Query: 177 QVFKSLMHSKEKPTLPTFNSMIIN--YGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
           ++    M  K  P    F +++I       R Q  A++ F KM  +   P  + Y  +I 
Sbjct: 44  EILVDEMIGKNCPPDIKFYALVIKEAINTGRFQ-TAQHWFSKMKLLGCPPDIVIYNILIL 102

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
            YG   N S+A + F +L   G      T  A+L A    G   + +   +     G+ P
Sbjct: 103 EYGKRGNFSQAMKYFSQLKDEGLLPDSGTYCAVLSACRKVGNIDKGNETLKEMREAGIKP 162

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           D   Y +L   + KA   E      + ++ +G +P+   +   +  F+
Sbjct: 163 DQVAYSILIDMFGKAGRHEDAAATFRELQMSGYLPDSVAYNTLIHAFA 210


>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
 gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic; Flags: Precursor
 gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
 gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
          Length = 918

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 156/331 (47%), Gaps = 4/331 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +S LI+  G+ G    A+ +F+ M+  G RP+   YNA+I A      + K +AK   +F
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAK---FF 327

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+     +P+ +T+N LL  C++    +    LF E+    +  D+++YN ++DA  K
Sbjct: 328 DEMQ-RNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICK 386

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +     +L++M   +  P++++++ +ID + K   FD+   +F  + +        +
Sbjct: 387 GGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVS 446

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N+++  Y K     +A  + ++M ++      +TY  ++  YG        +++F E+ 
Sbjct: 447 YNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMK 506

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           +      + T + +++ Y   GL  EA  +F    + G+  D   Y  L  A  K  +  
Sbjct: 507 REHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVG 566

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
               L+  M + GI PN   +   ++ F  S
Sbjct: 567 SAVSLIDEMTKEGISPNVVTYNSIIDAFGRS 597



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 147/318 (46%), Gaps = 10/318 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           + S +I+ +G+ G+  +A  +F      G       ++ALI+A+     ++    +A+  
Sbjct: 235 LASAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAY----GRSGLHEEAISV 290

Query: 73  FQKMK--GMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAPDIYTYNGVMD 129
           F  MK  G+   +PN+VTYN ++ AC +      QV   F E+  + + PD  T+N ++ 
Sbjct: 291 FNSMKEYGL---RPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLA 347

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              + G+ +   ++   M + + + D+ ++N L+D+  K    D   ++   +   +  P
Sbjct: 348 VCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMP 407

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + +++++I  + KA    +A  +F +M  +      ++Y  ++++Y        A +I 
Sbjct: 408 NVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDIL 467

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E++ +G    V T NA+L  Y   G   E   +F       V P+  TY  L   Y+K 
Sbjct: 468 REMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKG 527

Query: 310 NMKELVQKLLKRMEQNGI 327
            + +   ++ +  +  G+
Sbjct: 528 GLYKEAMEIFREFKSAGL 545



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 122/267 (45%), Gaps = 8/267 (2%)

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-IKEMESVL 144
           +  ++ L+ A  ++   ++  ++F  + E  L P++ TYN V+DA GK GM  K++    
Sbjct: 268 VYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFF 327

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             M+ N  +PD ITFN L+    +   ++    +F  + + + +  + ++N+++    K 
Sbjct: 328 DEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKG 387

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
                A  +  +M   +  P+ ++Y  +I  +        A  +F E+  LG  +   + 
Sbjct: 388 GQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSY 447

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N +L  Y   G   EA  +     ++G+  D  TY  L   Y K    + V+K+   M++
Sbjct: 448 NTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKR 507

Query: 325 NGIVPNKRFFLEALETFSSSLAGSQSG 351
             ++PN       L T+S+ + G   G
Sbjct: 508 EHVLPN-------LLTYSTLIDGYSKG 527



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 147/338 (43%), Gaps = 34/338 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+  + K GQ  LA  + ++M      P+   Y+ +I        KA    +A
Sbjct: 373 DVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFA----KAGRFDEA 428

Query: 70  LGYFQKMK----GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L  F +M+     ++R     V+YN LL    +    ++   + +E+    +  D+ TYN
Sbjct: 429 LNLFGEMRYLGIALDR-----VSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYN 483

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++  YGK G   E++ V + MK     P+++T++ LID Y K   + +  ++F+    +
Sbjct: 484 ALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSA 543

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
             +  +  ++++I    K  L G A  +  +MT    +P+ +TY  II  +G    + R+
Sbjct: 544 GLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRS 603

Query: 246 REIFDELSKLGKDMKVSTL-----NAMLEAY--------------CMNGLPTEADLL--F 284
            +  +  S       +S L     N +++ +              C  G+   + +L  F
Sbjct: 604 ADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVF 663

Query: 285 ENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
              H + + P+  T+  +  A ++ N  E    LL+ +
Sbjct: 664 RKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEEL 701


>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
          Length = 831

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 163/333 (48%), Gaps = 7/333 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + ++      + L S++  +G +PD  ++NA+I A      ++  L +A+  F
Sbjct: 357 YTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINAS----SESGNLDQAMKIF 412

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE-LHESILAPDIYTYNGVMDAYG 132
           +KMK    CKP   T+N L++   +   +++ + L    L + +L P+  T N ++ A+ 
Sbjct: 413 EKMK-ESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWC 471

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ-VFKSLMHSKEKPTL 191
               I+E  +++ +M+S   KPD++TFN L  +Y +  +    E  +   ++H+K KP +
Sbjct: 472 NQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNV 531

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T  +++  Y +     +A   F +M  +   P+   +  +I  +   +++    E+ D 
Sbjct: 532 RTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDL 591

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G    V T + ++ A+   G     + ++ +    G+ PD   + +L K Y +A  
Sbjct: 592 MEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGE 651

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            E  +++L +M + G+ PN   + + +  + S+
Sbjct: 652 PEKAKQILNQMRKFGVRPNVVIYTQIISGWCSA 684



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 142/326 (43%), Gaps = 12/326 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT +++ +I    + G    AM +F +M+ SGC+P  S +N LI  +     K   L ++
Sbjct: 388 DTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGY----GKIGKLEES 443

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                 M   E  +PN  T NIL++A    R +++   +  ++    + PD+ T+N +  
Sbjct: 444 SRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAK 503

Query: 130 AYGKNGMIKEMES-VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE- 187
           AY + G     E  ++ RM  N+ KP++ T   +++ Y +     KME+  +     KE 
Sbjct: 504 AYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEE---GKMEEALRFFYRMKEL 560

Query: 188 --KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P L  FNS+I  +           V   M      P  +T+  ++  +    ++ R 
Sbjct: 561 GVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRC 620

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            EI+ ++ + G D  +   + + + Y   G P +A  +       GV P+   Y  +   
Sbjct: 621 EEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAKQILNQMRKFGVRPNVVIYTQIISG 680

Query: 306 YTKAN-MKELVQKLLKRMEQNGIVPN 330
           +  A  MK+ +Q   K     G+ PN
Sbjct: 681 WCSAGEMKKAMQVYKKMCGIVGLSPN 706



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 120/266 (45%), Gaps = 2/266 (0%)

Query: 80  ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
           E  KP+++TY  L+ A  + ++   + +L  ++ ++ L PD   +N +++A  ++G + +
Sbjct: 348 EGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQ 407

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMI 198
              +  +MK + CKP   TFN LI  YGK    ++  ++   ++  +  +P   T N ++
Sbjct: 408 AMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILV 467

Query: 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE-IFDELSKLGK 257
             +   R   +A  +  KM +    P  +T+  +   Y    +   A + I   +     
Sbjct: 468 QAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKV 527

Query: 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
              V T   ++  YC  G   EA   F     +GV P+   +  L K +   N  + V +
Sbjct: 528 KPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGE 587

Query: 318 LLKRMEQNGIVPNKRFFLEALETFSS 343
           ++  ME+ G+ P+   F   +  +SS
Sbjct: 588 VVDLMEEFGVKPDVVTFSTLMNAWSS 613



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 6/242 (2%)

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           + +++F  L E    P + TY  ++ A  +      + S++S+++ N  KPD I FN +I
Sbjct: 337 EAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAII 396

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKY 222
           ++  +    D+  ++F+ +  S  KPT  TFN++I  YGK  +L+  +  +   +     
Sbjct: 397 NASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEML 456

Query: 223 TPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTE 279
            P+  T  C I +  +C+   +  A  I  ++   G    V T N + +AY   G   T 
Sbjct: 457 QPNDRT--CNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTA 514

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
            D++     +  V P+  T   +   Y +    E   +   RM++ G+ PN   F   ++
Sbjct: 515 EDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIK 574

Query: 340 TF 341
            F
Sbjct: 575 GF 576



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/329 (18%), Positives = 142/329 (43%), Gaps = 40/329 (12%)

Query: 36  EMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95
           +M++ G +PD   +N L  A  + R  +   A+ +   + +    + KPN+ T   ++  
Sbjct: 485 KMQSYGVKPDVVTFNTL--AKAYARIGSTCTAEDMIIPRMLH--NKVKPNVRTCGTIVNG 540

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
             +   +++    F  + E  + P+++ +N ++  +     +  +  V+  M+    KPD
Sbjct: 541 YCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPD 600

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
           ++TF+ L++++       + E+++  ++     P +  F+ +   Y +A    KA+ +  
Sbjct: 601 VVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAKQILN 660

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
           +M      P+ + Y  II+ +     + +A +++ ++  +                    
Sbjct: 661 QMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGI-------------------- 700

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335
                         +G++P+ +TY+ L   + +A      ++LLK ME   +VP ++  +
Sbjct: 701 --------------VGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRK-TM 745

Query: 336 EALETFSSSLAGSQSGSAKTDLTRSLSTA 364
           + +     S+  S S  A T L  S ST+
Sbjct: 746 QLIADGWKSIGVSNSNDANT-LGSSFSTS 773



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 96/217 (44%), Gaps = 6/217 (2%)

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D+ +   +M+   + G  +E  S+ + +     KP +IT+  L+ +  +++ F  +  + 
Sbjct: 318 DVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLI 377

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             +  +  KP    FN++I    ++    +A  +F+KM      P+  T+  +I  YG  
Sbjct: 378 SKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKI 437

Query: 240 DNVSRAREIFDELSKLGKDM---KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
             +  +  + D +  L  +M      T N +++A+C      EA  +     + GV PD 
Sbjct: 438 GKLEESSRLLDMM--LRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDV 495

Query: 297 STYKLLYKAYTKANMKELVQK-LLKRMEQNGIVPNKR 332
            T+  L KAY +       +  ++ RM  N + PN R
Sbjct: 496 VTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVR 532



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   +S L     + G+   A  + ++MR  G RP+  +Y  +I+        A  + KA
Sbjct: 635 DIHAFSILAKGYARAGEPEKAKQILNQMRKFGVRPNVVIYTQIISGWC----SAGEMKKA 690

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +  ++KM G+    PN+ TY  L+    +A+   +   L K++    + P   T   + D
Sbjct: 691 MQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLIAD 750

Query: 130 AYGKNGM 136
            +   G+
Sbjct: 751 GWKSIGV 757


>gi|414888267|tpg|DAA64281.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
          Length = 873

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 161/414 (38%), Gaps = 74/414 (17%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRL------------------------------- 29
           MQ+Q W   D  I++ +I V+G++G   L                               
Sbjct: 129 MQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPAESRTALSYTSLIAAYARNA 188

Query: 30  ----AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMK--GMERCK 83
               A  L  +M+ +G  P  + YN ++ A     D        LG F +M+       +
Sbjct: 189 LHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDASPSVR 248

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG-------M 136
           P++ TYN LL A A     DQ   L   + E+ ++PD  +Y  ++DA+   G       +
Sbjct: 249 PDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAFASAGNLSRAAEL 308

Query: 137 IKEMES----------------------------VLSRMKSNQCKPDIITFNLLIDSYGK 168
             EM +                            VL +M+++ C P   T+ +L+D YG+
Sbjct: 309 FSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPTAATYRVLLDLYGR 368

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
           +  FD + Q+F+  M +   P   T+N +   +G      +   +F  M      P  +T
Sbjct: 369 QGRFDGVRQLFRE-MRTAVPPDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVT 427

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
            E ++   G+      ARE+ + +++ G          ++EA     +  EA + F    
Sbjct: 428 CENVMAACGHGGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMT 487

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN-GIVPNKRFFLEALETF 341
            +G  P   TY  L  AY +  + +  + +  RM  N GI  +K  F   +E +
Sbjct: 488 EIGSLPTLETYNALAFAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAY 541



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 133/322 (41%), Gaps = 7/322 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  Y  ++      G    A  LFSEM  +G   D S Y  L+ AH     +  A A A
Sbjct: 285 DTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHT----RVGATADA 340

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +   ++M+  + C P   TY +LL    +    D V  LF+E+  ++  PD  TYN +  
Sbjct: 341 VAVLRQMQA-DGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTAV-PPDTATYNVLFR 398

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +G  G  KE+  +   M     +PD++T   ++ + G         +V + +      P
Sbjct: 399 VFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVP 458

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           T   +  ++   G A +  +A   F  MT +   P+  TY  +   Y        A  IF
Sbjct: 459 TADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQEAEAIF 518

Query: 250 DELS-KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             +S   G      + +A++EAYC      +A   +         PD  + + +  AY  
Sbjct: 519 SRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCI 578

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
           A + +  ++  + ++ +  +P+
Sbjct: 579 AGVIDESKEQFEELQSSVTMPS 600



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 133/301 (44%), Gaps = 27/301 (8%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARN--VDQVNALFKEL-HESILAPDIYTY 124
           ++L  F+ M+    C+P+   + I++    +     +D+   +F +L  ES  A    +Y
Sbjct: 121 RSLRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPAESRTA---LSY 177

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ----AFDKMEQVFK 180
             ++ AY +N + +E  ++L +MK+    P   T+N ++ +  +       FD +  +F 
Sbjct: 178 TSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARATDPPVPFDMLLGLFA 237

Query: 181 SLMHSKE---KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
            + H      +P L T+N+++       L  ++E +   M     +P  ++Y  I+  + 
Sbjct: 238 EMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAFA 297

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
              N+SRA E+F E++  G     S    ++EA+   G   +A  +       G  P ++
Sbjct: 298 SAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPTAA 357

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR-------------FFLEALETFSSS 344
           TY++L   Y +    + V++L + M +  + P+               FF E +E F   
Sbjct: 358 TYRVLLDLYGRQGRFDGVRQLFREM-RTAVPPDTATYNVLFRVFGDGGFFKEVVELFHDM 416

Query: 345 L 345
           L
Sbjct: 417 L 417



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/244 (20%), Positives = 98/244 (40%), Gaps = 5/244 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  +G       A   F+ M   G  P    YNAL  A+     +     +A   F
Sbjct: 463 YTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYA----RGGLFQEAEAIF 518

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M      + +  +++ L+ A  Q   +D     + E+ +S   PD  +  GV++AY  
Sbjct: 519 SRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCI 578

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G+I E +     ++S+   P +I + +++  Y +   +     + + +  ++   T   
Sbjct: 579 AGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQV 638

Query: 194 FNSMIIN-YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
             S+I   Y  +      EYV +  T      SF  +  ++ +  +     RA  + D+ 
Sbjct: 639 IASLIKGEYDDSSNWQMVEYVLENSTMEGCDYSFRFFNALLGVLWWFGQKGRAARVLDQA 698

Query: 253 SKLG 256
            K G
Sbjct: 699 VKFG 702



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 84/209 (40%), Gaps = 34/209 (16%)

Query: 148 KSNQCKPDIITFNLLIDSYGKRQA--FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
           + + C+PD     ++I   G++     DK  +VF  L    E  T  ++ S+I  Y +  
Sbjct: 131 RQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDL--PAESRTALSYTSLIAAYARNA 188

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
           L  +A  +  +M A    P+  TY  ++     C   +     FD L  L  +M+     
Sbjct: 189 LHEEARALLDQMKATGVAPTAATYNTVLAA---CARATDPPVPFDMLLGLFAEMR----- 240

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
                               +  +  V PD +TY  L  A    ++ +  + LL  M + 
Sbjct: 241 --------------------HDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEA 280

Query: 326 GIVPNKRFFLEALETFSSSLAGSQSGSAK 354
           G+ P+   +   ++ F+S  AG+ S +A+
Sbjct: 281 GVSPDTVSYRHIVDAFAS--AGNLSRAAE 307


>gi|357123530|ref|XP_003563463.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 862

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/414 (22%), Positives = 162/414 (39%), Gaps = 74/414 (17%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRL------------------------------- 29
           MQ+Q W   D  I++ +I V+G++G   L                               
Sbjct: 123 MQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPADSRTALSYTSLIAAYARNA 182

Query: 30  ----AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKG--MERCK 83
               A  L  +M+ +G  P  + YN ++ A     D        LG F +M+       +
Sbjct: 183 LHEEARALLDQMKAAGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDVSPAVR 242

Query: 84  PNIVTYNILLRACA-----------------------------------QARNVDQVNAL 108
           P++ TYN LL A A                                   +A ++ +V  L
Sbjct: 243 PDLTTYNTLLAAAAVRSLNDQAEMLLRAMLEAGVLPDTASYRHIVDAFARAGDLSRVAEL 302

Query: 109 FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
           F+E+ ++   PD   Y G+M+A+ + G   E  +VL +M+++ C P   T+ +L+D YG+
Sbjct: 303 FREMADTGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQADGCAPTAATYRVLLDLYGR 362

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
           +  FD + ++F+  M +   P   T+N +   +G      +   +F  M      P   T
Sbjct: 363 QGRFDGVRELFRE-MRTAVPPDTATYNVLFSVFGDGGFFKEVVELFHDMLRTGIEPDMET 421

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
            E ++   G       ARE+ D ++K G          ++EA     +  EA + F    
Sbjct: 422 CEGVLVACGQGGLHEDAREVLDYITKEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMT 481

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN-GIVPNKRFFLEALETF 341
            +G  P   TY  L   + K  + +  + +  RM  + GI  NK  F   +E +
Sbjct: 482 EIGSLPTIETYNSLANVFAKGGLFQEAESIFSRMTNSAGIQKNKDSFDALIEAY 535



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 138/324 (42%), Gaps = 7/324 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + DT  Y  ++    + G       LF EM ++G  PDPS Y  L+ AH     +  A A
Sbjct: 277 LPDTASYRHIVDAFARAGDLSRVAELFREMADTGHTPDPSAYLGLMEAHT----RVGATA 332

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A+   ++M+  + C P   TY +LL    +    D V  LF+E+  ++  PD  TYN +
Sbjct: 333 EAVAVLRQMQA-DGCAPTAATYRVLLDLYGRQGRFDGVRELFREMRTAV-PPDTATYNVL 390

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
              +G  G  KE+  +   M     +PD+ T   ++ + G+    +   +V   +     
Sbjct: 391 FSVFGDGGFFKEVVELFHDMLRTGIEPDMETCEGVLVACGQGGLHEDAREVLDYITKEGM 450

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            PT   +  ++   G A +  +A   F  MT +   P+  TY  +  ++        A  
Sbjct: 451 VPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNSLANVFAKGGLFQEAES 510

Query: 248 IFDELS-KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           IF  ++   G      + +A++EAYC      +A   +         PD  + + +  AY
Sbjct: 511 IFSRMTNSAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAY 570

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
             A + +  ++  + ++ N  VP+
Sbjct: 571 CIAGVIDESKEQFEEIQSNMAVPS 594



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 129/300 (43%), Gaps = 25/300 (8%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARN--VDQVNALFKELHESILAPDIYTYN 125
           +++  F+ M+    C+P+   + I++    +     +D+   +F +L     +    +Y 
Sbjct: 115 RSVRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPAD--SRTALSYT 172

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ----AFDKMEQVFKS 181
            ++ AY +N + +E  ++L +MK+    P   T+N ++ +  +       FD +  +F  
Sbjct: 173 SLIAAYARNALHEEARALLDQMKAAGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAE 232

Query: 182 LMHSKE---KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           + H      +P L T+N+++       L  +AE + + M      P   +Y  I+  +  
Sbjct: 233 MRHDVSPAVRPDLTTYNTLLAAAAVRSLNDQAEMLLRAMLEAGVLPDTASYRHIVDAFAR 292

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             ++SR  E+F E++  G     S    ++EA+   G   EA  +       G  P ++T
Sbjct: 293 AGDLSRVAELFREMADTGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQADGCAPTAAT 352

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR-------------FFLEALETFSSSL 345
           Y++L   Y +    + V++L + M +  + P+               FF E +E F   L
Sbjct: 353 YRVLLDLYGRQGRFDGVRELFREM-RTAVPPDTATYNVLFSVFGDGGFFKEVVELFHDML 411



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 138/336 (41%), Gaps = 51/336 (15%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA----HLHTRDKAKA 65
           DT  Y+ L +V G  G  +  + LF +M  +G  PD      ++ A     LH   +   
Sbjct: 383 DTATYNVLFSVFGDGGFFKEVVELFHDMLRTGIEPDMETCEGVLVACGQGGLHEDAR--- 439

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
             + L Y  K +GM    P    Y  L+ A   A   ++    F  + E    P I TYN
Sbjct: 440 --EVLDYITK-EGM---VPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYN 493

Query: 126 GVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
            + + + K G+ +E ES+ SRM  S   + +  +F+ LI++Y +    D   + +  +  
Sbjct: 494 SLANVFAKGGLFQEAESIFSRMTNSAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRK 553

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
           S+  P   +   ++  Y  A +  +++  F+++ +    PS I Y  ++++Y   D  + 
Sbjct: 554 SRFNPDERSLEGVLNAYCIAGVIDESKEQFEEIQSNMAVPSIIAYCMMLSLYARNDRWAD 613

Query: 245 AREIFDEL-----------------------------------SKL-GKDMKVSTLNAML 268
           A ++ +E+                                   S L G D  +   NA+L
Sbjct: 614 AYDLLEEMKTNRASSTHQVIASMIQGEYDDSSNWQMVEYALDSSNLEGCDYSLRFFNALL 673

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPD-SSTYKLLY 303
           +     G    A  + +++ N G+ P+ S   KL++
Sbjct: 674 DVLWWFGQKARAARVLDHAVNSGLFPELSRDTKLVW 709


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 145/324 (44%), Gaps = 14/324 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ L+  + +  Q   A  L   M+  GC PD ++YNALI+ +     KAK   +A
Sbjct: 9   DAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGY----SKAKDFGQA 64

Query: 70  LGYFQKMKGMERCKPNIVTY-NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
             +  +M     C P +VTY NI+   C   R  D V  L  E+ +   +P+IYTYN ++
Sbjct: 65  FKFLAEMV-KNHCLPTVVTYTNIVDGLCKAGRTKDAVK-LLDEMRDKGCSPNIYTYNVIV 122

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           +   +   + E + +L  M      PD++T+N  I    K    D++++  K L      
Sbjct: 123 EGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCK---CDRVDEARKFLARMPVT 179

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAR 246
           P + ++ ++I    K+     A  +  +MT    TP  +TY  +I   G+C    V RA 
Sbjct: 180 PDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLID--GFCKGGEVERAM 237

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            + D + KLG    +   N++L A    G   +A+ +       G TPD  +Y       
Sbjct: 238 GLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGL 297

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            KA   +  + +  RM + G  PN
Sbjct: 298 CKAERVKKAKAVFDRMVERGCTPN 321



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 146/326 (44%), Gaps = 18/326 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKAL- 70
           Y+ ++  + K G+T+ A+ L  EMR+ GC P+   YN ++      R  D+AK + + + 
Sbjct: 83  YTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMA 142

Query: 71  --GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
             GYF          P++VTYN  ++   +   VD+     K L    + PD+ +Y  V+
Sbjct: 143 VRGYF----------PDVVTYNSFIKGLCKCDRVDEAR---KFLARMPVTPDVVSYTTVI 189

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           +   K+G +     +L +M +  C PD++T++ LID + K    ++   +  S++    +
Sbjct: 190 NGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCR 249

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P +  +NS++    +    GKAE +  +M    +TP  ++Y   I      + V +A+ +
Sbjct: 250 PNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAV 309

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           FD + + G     S+ + ++E  C      +A  L E +       D   Y +L     K
Sbjct: 310 FDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCK 369

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
               +    L  ++    I     FF
Sbjct: 370 GGRFDEACALFSKVLDEKICEPDVFF 395



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 143/352 (40%), Gaps = 46/352 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I  + K G    A  +  +M N GC PD   Y++LI        K   + +A
Sbjct: 181 DVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFC----KGGEVERA 236

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +G    M  +  C+PN+V YN LL A  +  ++ +   +  E+      PD+ +YN  +D
Sbjct: 237 MGLLDSMLKL-GCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACID 295

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKP----------------------------------- 154
              K   +K+ ++V  RM    C P                                   
Sbjct: 296 GLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIV 355

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK-EKPTLPTFNSMIINYGKARLQGKAEYV 213
           DI+ + +L+D   K   FD+   +F  ++  K  +P +  +N M+ ++ K R   KA  +
Sbjct: 356 DILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQI 415

Query: 214 FQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
            ++M   +   + +T+   I ++G C  D +S A  +   +   G      T   +++A 
Sbjct: 416 HKQMLE-RNCCNVVTWN--ILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAM 472

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
           C  G    A  LFE +   G  PD  TY  L       NM E    L  +++
Sbjct: 473 CKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLD 524



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 129/294 (43%), Gaps = 8/294 (2%)

Query: 37  MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 96
           M +  C+PD   +  L+        ++  L KA     +MK M  C P+   YN L+   
Sbjct: 1   MIDKSCQPDAFTFAILLRGLC----RSNQLEKARQLLGRMKEM-GCVPDDAIYNALISGY 55

Query: 97  AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
           ++A++  Q      E+ ++   P + TY  ++D   K G  K+   +L  M+   C P+I
Sbjct: 56  SKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNI 115

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
            T+N++++   + +  D+ +++ + +      P + T+NS I    K     +A     +
Sbjct: 116 YTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLAR 175

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M     TP  ++Y  +I       ++  A  + D+++  G    V T +++++ +C  G 
Sbjct: 176 MPV---TPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGE 232

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              A  L ++   +G  P+   Y  L  A  +       + +L  ME+ G  P+
Sbjct: 233 VERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPD 286



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 116/278 (41%), Gaps = 38/278 (13%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG-CRPDPSVYNALITAHLHTRD 61
           ++++ I D  +Y+ L+  + K G+   A  LFS++ +   C PD   YN ++ +H     
Sbjct: 349 REKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHC---- 404

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPD 120
           K + + KAL   ++M  +ER   N+VT+NIL+   C   R  D    L   + E  + PD
Sbjct: 405 KRRQIDKALQIHKQM--LERNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFI-PD 461

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF--------------------- 159
             TY  ++DA  K G       +        C PD++T+                     
Sbjct: 462 FVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFT 521

Query: 160 -------NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN-YGKARLQGKAE 211
                  N +I  Y +  + D   ++F  L+ S  +P   TF   I     KA   GKA 
Sbjct: 522 KLDVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEISGKLVKAESLGKAR 581

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +F +     + P       +I ++  C ++  AR IF
Sbjct: 582 GLFDRAVKGGFFPDLFVANTLIDVFAKCGDLEEARRIF 619



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 13/177 (7%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           +I D   Y  L+  M K G++  A+ LF E    GC PD   Y+ALIT  +H     +A 
Sbjct: 458 FIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAY 517

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
                 F K+        ++  +N ++   A+  + D    LF EL ES + P+  T+  
Sbjct: 518 L----LFTKL--------DVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGK 565

Query: 127 VMDA-YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            +     K   + +   +  R       PD+   N LID + K    ++  ++F S+
Sbjct: 566 EISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDLEEARRIFYSM 622


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 125/270 (46%), Gaps = 5/270 (1%)

Query: 77  KGMERCK-----PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           K M+RC      P I TYNIL+    +AR  D    +F  L  + L PD+++YN ++D +
Sbjct: 175 KRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGF 234

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G + +   +  +M+     P+++T++ LI+   K +  DK E+V + ++ +  +P  
Sbjct: 235 SKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNN 294

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+N +I  Y  + +  ++  VF++M++    P        +T       +  AR+IFD 
Sbjct: 295 MTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDS 354

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G    V +  A+L  Y   G     D LF      GV PD   +  L  AY +  M
Sbjct: 355 MVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGM 414

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            +    + + M + G+ P+   F   +  F
Sbjct: 415 MDKSLLMFEDMTKQGVNPDIITFSTVISAF 444



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 147/318 (46%), Gaps = 9/318 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    +  +  L + +F  +  +G  PD   YNALI        K   + KA   F
Sbjct: 192 YNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGF----SKEGEVDKAHDLF 247

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM+  +   PN+VTY+ L+    + + +D+   + +++  + + P+  TYN ++  Y  
Sbjct: 248 YKMEE-QGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYST 306

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +GM KE   V   M S+   PD+   N  + +  K     +   +F S++    KP + +
Sbjct: 307 SGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVIS 366

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + +++  Y  A      + +F  M      P    +  +I  Y     + ++  +F++++
Sbjct: 367 YGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMT 426

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           K G +  + T + ++ A+C  G   +A   F +  + GV PD++ Y  L +   + N ++
Sbjct: 427 KQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQG--QCNRRD 484

Query: 314 LV--QKLLKRMEQNGIVP 329
           LV  ++L+  M   GI P
Sbjct: 485 LVKAKELISDMLSKGIPP 502



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 148/333 (44%), Gaps = 12/333 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   +S +I+   + G+   AM  F+ M ++G  PD +VY+ LI    + RD  KA  K 
Sbjct: 433 DIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKA--KE 490

Query: 70  LGYFQKMKGMERCKPNIVTY--NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           L      KG+    P  + +  +I+   C + R  +  + +   +H     P++ T+N +
Sbjct: 491 LISDMLSKGI---PPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTG-QRPNLITFNSL 546

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D Y   G +KE   +L  M+S   +PDI T+N L+D Y K    D    +F+ ++H + 
Sbjct: 547 VDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRV 606

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRA 245
             T  ++N ++    +AR    A+ +F +M       S  TY  ++   G C N     A
Sbjct: 607 TLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLG--GLCRNNCTDEA 664

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             + ++L  +     + T N ++ A    G   EA  LF      G+ P   TY+++   
Sbjct: 665 NMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITN 724

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
             K    E    L   ME++   P+ R   E +
Sbjct: 725 LIKEESFEDADNLFSSMEKSSCTPDSRILNEII 757



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 136/297 (45%), Gaps = 8/297 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL-HTRDKAKALAKALGY 72
           Y+ LI      G  + ++ +F EM +S   PD    N+ +TA   H R K     +A   
Sbjct: 297 YNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIK-----EARDI 351

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F  M  ++  KP++++Y  LL   A A  +  ++ LF  +    + PD + +N +++AY 
Sbjct: 352 FDSMV-LKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYA 410

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + GM+ +   +   M      PDIITF+ +I ++ +    D   + F  ++ +   P   
Sbjct: 411 RLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTA 470

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT-YECIITMYGYCDNVSRAREIFDE 251
            ++ +I      R   KA+ +   M +    P  I  +  II        V+  +++ D 
Sbjct: 471 VYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDL 530

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           +   G+   + T N++++ YC+ G   EA  L ++  ++GV PD  TY  L   Y K
Sbjct: 531 IIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCK 587



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 149/341 (43%), Gaps = 13/341 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D G  +  +  + K G+ + A  +F  M   G +PD   Y AL    LH    A  +A
Sbjct: 326 VPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGAL----LHGYATAGCIA 381

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
                F  M   E   P+   +N L+ A A+   +D+   +F+++ +  + PDI T++ V
Sbjct: 382 GMDNLFNVMV-CEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTV 440

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK- 186
           + A+ + G + +     + M      PD   ++ LI     R+   K +++   ++    
Sbjct: 441 ISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGI 500

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P +  F S+I N  K     + + V   +      P+ IT+  ++  Y    N+  A 
Sbjct: 501 PPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAV 560

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            + D +  +G +  + T N +++ YC +G   +A  LF +  +  VT  S +Y ++    
Sbjct: 561 GLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGL 620

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
            +A    + +++   M ++G+         ++ T+++ L G
Sbjct: 621 FQARRTIVAKEMFHEMIESGMA-------VSIHTYATVLGG 654



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 137/310 (44%), Gaps = 10/310 (3%)

Query: 29  LAMWLFSEMRNSGCRPD--PSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERCKP 84
           LA+ LF  M    C P+  P++Y   I  + + R +   L   L  F ++   G+    P
Sbjct: 169 LAVELFKRMDRCAC-PEAAPTIYTYNILINCYRRARRPDLG--LPVFGRLLRTGL---GP 222

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           ++ +YN L+   ++   VD+ + LF ++ E  + P++ TY+ +++   K   + + E VL
Sbjct: 223 DVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVL 282

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
            +M     +P+ +T+N LI  Y     + +  +VFK +  S   P +   NS +    K 
Sbjct: 283 RQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKH 342

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
               +A  +F  M      P  I+Y  ++  Y     ++    +F+ +   G        
Sbjct: 343 GRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVF 402

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N ++ AY   G+  ++ L+FE+    GV PD  T+  +  A+ +    +   +    M  
Sbjct: 403 NTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMID 462

Query: 325 NGIVPNKRFF 334
            G+ P+   +
Sbjct: 463 TGVPPDTAVY 472



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 115/254 (45%), Gaps = 11/254 (4%)

Query: 25  GQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP 84
           G  + A+ L   M + G  PD   YN L+  +     K   +  AL  F+ M   +R   
Sbjct: 554 GNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYC----KHGRIDDALTLFRDML-HKRVTL 608

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
             V+YNI+L    QAR       +F E+ ES +A  I+TY  V+    +N    E   +L
Sbjct: 609 TSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLL 668

Query: 145 SRMKSNQCKPDIITFNLLIDS---YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
            ++ S   K DI+TFN++I +    G+RQ   + +++F ++      PT+ T+  MI N 
Sbjct: 669 EKLFSMNVKFDILTFNIVIRAMFKVGRRQ---EAKELFAAISTYGLVPTILTYRVMITNL 725

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            K      A+ +F  M     TP       II M      V++A     ++ K G   + 
Sbjct: 726 IKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEA 785

Query: 262 STLNAMLEAYCMNG 275
           +T + ++  + +NG
Sbjct: 786 TTTSLLIYLFSVNG 799



 Score = 44.3 bits (103), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 58/138 (42%)

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
           P+  TY  +I  Y           +F  L + G    V + NA+++ +   G   +A  L
Sbjct: 187 PTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDL 246

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
           F      G+ P+  TY  L     K    +  +++L++M   G+ PN   +   +  +S+
Sbjct: 247 FYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYST 306

Query: 344 SLAGSQSGSAKTDLTRSL 361
           S    +S     +++ SL
Sbjct: 307 SGMWKESVRVFKEMSSSL 324


>gi|255549794|ref|XP_002515948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544853|gb|EEF46368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 706

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 157/354 (44%), Gaps = 31/354 (8%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT-----AHLHTRDKAKALAK 68
           Y+ +I  +         + LFS+M    CRP+   Y+ ++T       LH  DK   L++
Sbjct: 150 YNTMIQALANSRMVDKTILLFSKMMEKNCRPNEFTYSVILTLLAAEGQLHKLDKVVELSR 209

Query: 69  -------------ALGYFQKMKGMERCKPNIVTYN----------ILLRACAQARNVDQV 105
                         L          R   N+ +Y+          +L   C   + V+ +
Sbjct: 210 KYMNRSIYAYLVRTLNKLGHASEAHRLFCNMWSYHDRGDRDACLSMLESLCNAGKTVEAI 269

Query: 106 NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
           + L K +HE  +  D   YN V  A G+   I  +  +  +MK +   PDI T+N+LI S
Sbjct: 270 DLLGK-IHEKGINTDTIMYNTVFTALGRLKQISHLYDLYEKMKLDGPLPDIFTYNILISS 328

Query: 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
           +G+     +  ++F+ L +S  KP + ++NS+I   GK     +A   F++M      P 
Sbjct: 329 FGRAGKVYEAIKIFEELENSDCKPDIISYNSLINCLGKNGDLDEAHIRFREMQEKGLNPD 388

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
            +TY  +I  +G  D V  A  +FDE+   G    + T N +L+    +G   EA  L+ 
Sbjct: 389 VVTYSTLIECFGKTDKVEMACRLFDEMLAEGCFPNIVTYNILLDCLERSGRTAEAVDLYA 448

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
                G+TPDS TY +L +  + ++ K  V++  K      +V   R+FL+ L+
Sbjct: 449 KLKQQGLTPDSITYSVLERLQSGSHRKLRVRR--KNPITGWVVSPLRYFLKQLQ 500



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 126/302 (41%), Gaps = 41/302 (13%)

Query: 70  LGYFQKMKGMERC---------KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           +G+F   + +ERC         K N  TY  L++A  ++ + D    ++ E+       D
Sbjct: 17  IGFFGDGEDLERCIGLIEKWDLKMNGYTYKCLVQAYLRSCDSDNGFRVYLEMKRKGYTLD 76

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           I+ +N ++DA  K+  + +   V   MK   C+PD  T+ ++I   G+    D+   +F+
Sbjct: 77  IFAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTIMIRMTGRIGKLDESLALFE 136

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +++    P L  +N+MI     +R+  K   +F KM      P+  TY  I+T+     
Sbjct: 137 EMLNKGCSPNLIAYNTMIQALANSRMVDKTILLFSKMMEKNCRPNEFTYSVILTLLAAEG 196

Query: 241 NVSRAREIFD----------------ELSKLGKDMKVSTLN----------------AML 268
            + +  ++ +                 L+KLG   +   L                 +ML
Sbjct: 197 QLHKLDKVVELSRKYMNRSIYAYLVRTLNKLGHASEAHRLFCNMWSYHDRGDRDACLSML 256

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           E+ C  G   EA  L    H  G+  D+  Y  ++ A  +      +  L ++M+ +G +
Sbjct: 257 ESLCNAGKTVEAIDLLGKIHEKGINTDTIMYNTVFTALGRLKQISHLYDLYEKMKLDGPL 316

Query: 329 PN 330
           P+
Sbjct: 317 PD 318



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 147/346 (42%), Gaps = 16/346 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K++ Y  D   ++ L+  + K  +   A  +F +M+   C PD   Y  +I        +
Sbjct: 69  KRKGYTLDIFAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTIMI----RMTGR 124

Query: 63  AKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
              L ++L  F++M  KG   C PN++ YN +++A A +R VD+   LF ++ E    P+
Sbjct: 125 IGKLDESLALFEEMLNKG---CSPNLIAYNTMIQALANSRMVDKTILLFSKMMEKNCRPN 181

Query: 121 IYTYNGVMDAYGKNGMIKEMESV--LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
            +TY+ ++      G + +++ V  LSR   N+       +  L+ +  K     +  ++
Sbjct: 182 EFTYSVILTLLAAEGQLHKLDKVVELSRKYMNRS-----IYAYLVRTLNKLGHASEAHRL 236

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           F ++    ++       SM+ +   A    +A  +  K+         I Y  + T  G 
Sbjct: 237 FCNMWSYHDRGDRDACLSMLESLCNAGKTVEAIDLLGKIHEKGINTDTIMYNTVFTALGR 296

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              +S   ++++++   G    + T N ++ ++   G   EA  +FE   N    PD  +
Sbjct: 297 LKQISHLYDLYEKMKLDGPLPDIFTYNILISSFGRAGKVYEAIKIFEELENSDCKPDIIS 356

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           Y  L     K    +      + M++ G+ P+   +   +E F  +
Sbjct: 357 YNSLINCLGKNGDLDEAHIRFREMQEKGLNPDVVTYSTLIECFGKT 402



 Score = 45.4 bits (106), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI   GK  +  +A  LF EM   GC P+   YN L    L   +++   A+A
Sbjct: 388 DVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCFPNIVTYNIL----LDCLERSGRTAEA 443

Query: 70  LGYFQKMKGMERCKPNIVTYNILLR 94
           +  + K+K  +   P+ +TY++L R
Sbjct: 444 VDLYAKLK-QQGLTPDSITYSVLER 467


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 156/358 (43%), Gaps = 44/358 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  ++  + K+G T LA  L ++M      P   +Y  +I        K K +  A
Sbjct: 220 DLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLC----KNKHMDDA 275

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           L  F++M  KG+   +PN+VTY+ L+            + L  ++ E  + PD++T++ +
Sbjct: 276 LNLFKEMETKGI---RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSAL 332

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +DA+ K G + E E +   M      P I+T++ LI+ +      D+ +Q+F+ ++    
Sbjct: 333 IDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 392

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P + +++++I  + KA+   +   +F++M+      + +TY  +I       +   A+E
Sbjct: 393 FPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQE 452

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE---------------------- 285
           IF E+   G    + T N +L+  C NG   +A ++FE                      
Sbjct: 453 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 512

Query: 286 -------------NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                        N    GV PD   Y  +   + +   KE    L K M+++G +PN
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 570



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 137/319 (42%), Gaps = 44/319 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKALA 67
           D   +S LI    K+G+   A  L+ EM      P    Y++LI    +H R D+AK + 
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM- 383

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
                F+ M   + C P++V+Y+ L++   +A+ VD+   LF+E+ +  L  +  TY  +
Sbjct: 384 -----FEFMVS-KHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTL 437

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +    + G     + +   M S+   P+I+T+N L+D   K    +K   VF+ L  SK 
Sbjct: 438 IQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 497

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +PT+ T+N MI    KA   GK E                                   +
Sbjct: 498 EPTIYTYNIMIEGMCKA---GKVE--------------------------------DGWD 522

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F  LS  G    V   N M+  +C  G   EAD LF+     G  P+S  Y  L +A  
Sbjct: 523 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARL 582

Query: 308 KANMKELVQKLLKRMEQNG 326
           +   +E   +L+K M   G
Sbjct: 583 RDGDREASAELIKEMRSCG 601



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 154/355 (43%), Gaps = 46/355 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +SKL++ + K  +  + + L  +M+N G   +   Y+ LI           ALA  LG  
Sbjct: 84  FSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALA-VLGKM 142

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+ G E   PNIVT + LL     ++ + +  AL  ++  +   P+  T+N ++     
Sbjct: 143 MKL-GYE---PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD-------KMEQ--------- 177
           +    E  +++ RM +  C+PD++T+ ++++   KR   D       KMEQ         
Sbjct: 199 HNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLI 258

Query: 178 -------------------VFKSLMHSKEKPTLPTFNSMI---INYGKARLQGKAEYVFQ 215
                              +FK +     +P + T++S+I    NYG+      A  +  
Sbjct: 259 YTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGR---WSDASRLLS 315

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            M   K  P   T+  +I  +     +  A +++DE+ K   D  + T ++++  +CM+ 
Sbjct: 316 DMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHD 375

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              EA  +FE   +    PD  +Y  L K + KA   +   +L + M Q G+V N
Sbjct: 376 RLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGN 430



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 8/198 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR  + +T  Y+ LI  + + G   +A  +F EM + G  P+   YN L+          
Sbjct: 424 QRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLE 483

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           KA+     Y Q+ K ME   P I TYNI++    +A  V+    LF  L    + PD+  
Sbjct: 484 KAMV-VFEYLQRSK-ME---PTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVA 538

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY---GKRQAFDKMEQVFK 180
           YN ++  + + G  +E +++   MK +   P+   +N LI +    G R+A  ++ +  +
Sbjct: 539 YNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMR 598

Query: 181 SLMHSKEKPTLPTFNSMI 198
           S   + +  T+    +M+
Sbjct: 599 SCGFAGDASTIGLVTNML 616



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 118/278 (42%), Gaps = 5/278 (1%)

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L  A+  F +M    R  P+I+ ++ LL A A+    D V +L +++    +  + YTY+
Sbjct: 62  LDDAVALFGEMVK-SRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYS 120

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++ + +   +    +VL +M     +P+I+T + L++ Y   +   +   +   +  +
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVS 243
             +P   TFN++I          +A  +  +M A    P  +TY  ++   G C   +  
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVN--GLCKRGDTD 238

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  + +++ +   +  V     +++  C N    +A  LF+     G+ P+  TY  L 
Sbjct: 239 LAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLI 298

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
                        +LL  M +  I P+   F   ++ F
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAF 336


>gi|410110143|gb|AFV61151.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           velutina]
          Length = 382

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 141/294 (47%), Gaps = 6/294 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YNA+I        KAK   +
Sbjct: 3   GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFRE 58

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +MK      PN  +Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 59  ARSLISEMK-TAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMI 117

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +     +
Sbjct: 118 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIE 177

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSM++ YGK     KA  + Q+M +    P+ ITY  II+++G    + RA  +
Sbjct: 178 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAML 237

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKL 301
           F +L   G ++       M+ AY   GL   A  LL E      +  D++ + L
Sbjct: 238 FQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHIL 291



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 130/263 (49%), Gaps = 1/263 (0%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +KA+  F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  +Y+ 
Sbjct: 22  SKAISIFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 80

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +    
Sbjct: 81  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG      +A 
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G +    T + ++  +   G    A +LF+   + GV  D   ++ +  AY
Sbjct: 201 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 260

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            +A +    ++LL  +++   +P
Sbjct: 261 ERAGLVAHAKRLLHELKRPDNIP 283



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 149/331 (45%), Gaps = 15/331 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEM+ +G  P+ + Y+ L+T ++     
Sbjct: 32  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVEN--- 88

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   +AL  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ 
Sbjct: 89  -KKFLEALSVFSEMREI-KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 146

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++  YG   +  E   +   M+    + +++T+N ++  YGK    +K   + + +
Sbjct: 147 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 206

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P   T++++I  +GK     +A  +FQK+ +       I ++ +I  Y     V
Sbjct: 207 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLV 266

Query: 243 SRAREIFDELSK---LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           + A+ +  EL +   + +D  +  L          G   EA  +F  + + G   D + +
Sbjct: 267 AHAKRLLHELKRPDNIPRDTAIHILAGA-------GRIEEATYVFRQAVDAGEVKDITVF 319

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + +    +K      V ++  +M   G  P+
Sbjct: 320 ERMVHLLSKYKKYSNVVEVFDKMRGLGYFPD 350



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 119/250 (47%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           ++V Y+ L+    +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  S++
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
           S MK+    P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+ 
Sbjct: 64  SEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
            +  +A+ +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T 
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N+M+  Y       +A+ L +   + G+ P+S TY  +   + K    +    L +++  
Sbjct: 184 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 243

Query: 325 NGIVPNKRFF 334
           +G+  ++  F
Sbjct: 244 SGVEIDQILF 253


>gi|410110085|gb|AFV61122.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           fucata]
          Length = 382

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 141/294 (47%), Gaps = 6/294 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YNA+I        KAK   +
Sbjct: 3   GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFRE 58

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +MK      PN  +Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 59  ARSLIGEMKA-AGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMI 117

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +     +
Sbjct: 118 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIE 177

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSM++ YGK     KA  + Q+M +    P+ ITY  II+++G    + RA  +
Sbjct: 178 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAML 237

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKL 301
           F +L   G ++       M+ AY   GL   A  LL E      +  D++ + L
Sbjct: 238 FQKLRSSGIEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHIL 291



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 130/263 (49%), Gaps = 1/263 (0%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +KA+  F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  +Y+ 
Sbjct: 22  SKAISIFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYST 80

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +    
Sbjct: 81  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG      +A 
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G +    T + ++  +   G    A +LF+   + G+  D   ++ +  AY
Sbjct: 201 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAY 260

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            +A +    ++LL  +++   +P
Sbjct: 261 ERAGLVAHAKRLLHELKRPDNIP 283



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 148/331 (44%), Gaps = 15/331 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L  EM+ +G  P+ + Y+ L+T ++     
Sbjct: 32  KRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLTMYVEN--- 88

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   +AL  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ 
Sbjct: 89  -KKFLEALSVFSEMREI-KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 146

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++  YG   +  E   +   M+    + +++T+N ++  YGK    +K   + + +
Sbjct: 147 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 206

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P   T++++I  +GK     +A  +FQK+ +       I ++ +I  Y     V
Sbjct: 207 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLV 266

Query: 243 SRAREIFDELSK---LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           + A+ +  EL +   + +D  +  L          G   EA  +F  + + G   D + +
Sbjct: 267 AHAKRLLHELKRPDNIPRDTAIHILAGA-------GRIEEATYVFRQAIDAGEVKDITVF 319

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + +    +K      V ++  +M   G  P+
Sbjct: 320 ERMIHLLSKYKKYSNVVEVFDKMRGLGYFPD 350



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 118/250 (47%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           ++V Y+ L+    +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  S++
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             MK+    P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+ 
Sbjct: 64  GEMKAAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
            +  +A+ +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T 
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N+M+  Y       +A+ L +   + G+ P+S TY  +   + K    +    L +++  
Sbjct: 184 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 243

Query: 325 NGIVPNKRFF 334
           +GI  ++  F
Sbjct: 244 SGIEIDQILF 253


>gi|147812173|emb|CAN61517.1| hypothetical protein VITISV_033966 [Vitis vinifera]
          Length = 635

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 142/325 (43%), Gaps = 4/325 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D+  ++ +I    + G  + AM  F +M+ SG +P  S +N LI  +      A    ++
Sbjct: 141 DSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGY----GIAGEPEES 196

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               Z M   E  +PN+ TYN+L+RA     N+ +   +  ++  S L PD  TYN +  
Sbjct: 197 QKLLZLMSQDENVRPNLRTYNVLVRAWCNKXNIMKAWNVVYKMVASGLQPDAVTYNTIAT 256

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           AY +NG   + E ++  M+++  +P+  T  ++I  Y K     +  Q    +     +P
Sbjct: 257 AYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQP 316

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            L  FNS+I  +  A  +     V   M      P  IT+  I+  +     + + REIF
Sbjct: 317 NLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIF 376

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D++ K          + + + Y   G P +A+ +       G  P+   +  +   +  A
Sbjct: 377 DDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVMFTTIINGWCSA 436

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
              E   K+ ++M + GI PN + F
Sbjct: 437 GRMEYAIKIFEKMCECGIAPNLKTF 461



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 125/264 (47%), Gaps = 3/264 (1%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           KP++VTY  LL A    ++ D ++++  ++ E+ + PD   +N V++A+ ++G ++E   
Sbjct: 104 KPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMK 163

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE--KPTLPTFNSMIIN 200
              +MK +  KP   TFN LI  YG     ++ +++ + LM   E  +P L T+N ++  
Sbjct: 164 YFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLZ-LMSQDENVRPNLRTYNVLVRA 222

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
           +       KA  V  KM A    P  +TY  I T Y      S+A  I  E+        
Sbjct: 223 WCNKXNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPN 282

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
             T   ++  YC  G   EA        ++G+ P+   +  L K +  A  ++ V ++L 
Sbjct: 283 ERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLT 342

Query: 321 RMEQNGIVPNKRFFLEALETFSSS 344
            ME+ G+ P+   F   +  +S++
Sbjct: 343 LMEEFGVKPDVITFSTIMNAWSAA 366



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 134/290 (46%), Gaps = 11/290 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +     + G+   A  +  EM+NS  +P+      +I  +     K   + +A
Sbjct: 247 DAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYC----KEGKIKEA 302

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L +  +MK +   +PN+V +N L++    A + D VN +   + E  + PD+ T++ +M+
Sbjct: 303 LQFVYRMKDL-GLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMN 361

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A+   G + +   +   M   + +PD   +++L   Y +    +K E++  +++ S   P
Sbjct: 362 AWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHP 421

Query: 190 TLPTFNSMIINYGKARLQGKAEY---VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +  F ++I  +  A   G+ EY   +F+KM      P+  T+E +I  YG      ++ 
Sbjct: 422 NVVMFTTIINGWCSA---GRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSE 478

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
           E+   + +     + +TL  + EA+   GL  EA+ +     N   T ++
Sbjct: 479 EVLQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVKNEETTHET 528



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 112/240 (46%), Gaps = 3/240 (1%)

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +V ++   + E    P + TY  ++ A         + S++S+++ N  +PD I FN +I
Sbjct: 90  EVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVI 149

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           +++ +     +  + F  +  S  KPT  TFN++I  YG A    +++ + Z M+  +  
Sbjct: 150 NAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLZLMSQDENV 209

Query: 224 -PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
            P+  TY  ++  +    N+ +A  +  ++   G      T N +  AY  NG  ++A+ 
Sbjct: 210 RPNLRTYNVLVRAWCNKXNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEG 269

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           +     N  V P+  T  ++   Y K   +KE +Q  + RM+  G+ PN   F   ++ F
Sbjct: 270 IILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQ-FVYRMKDLGLQPNLVVFNSLIKGF 328


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 140/318 (44%), Gaps = 6/318 (1%)

Query: 30  AMWLFSEMRNSGCRPDPSV-YNALITAHLHTRDKAKALAKALGYFQKMKGMERCK----- 83
           A  LF E+      P P+   N L++A       A          +  K M+RC      
Sbjct: 56  ARHLFDELLLRRDAPAPARGLNELLSALARAPPSAACRDVPALAVELFKRMDRCACPEAA 115

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P I TYNIL+    +AR  D    +F  L  + L PD+++YN ++D + K G + +   +
Sbjct: 116 PTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDL 175

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
             +M+     P+++T++ LI+   K +  DK E+V + ++ +  +P   T+N +I  Y  
Sbjct: 176 FYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYST 235

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           + +  ++  VF++M++    P        +T       +  AR+IFD +   G    V +
Sbjct: 236 SGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVIS 295

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
             A+L  Y   G     D LF      GV PD   +  L  AY +  M +    + + M 
Sbjct: 296 YGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMT 355

Query: 324 QNGIVPNKRFFLEALETF 341
           + G+ P+   F   +  F
Sbjct: 356 KQGVNPDIITFSTVISAF 373



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 147/318 (46%), Gaps = 9/318 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    +  +  L + +F  +  +G  PD   YNALI        K   + KA   F
Sbjct: 121 YNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGF----SKEGEVDKAHDLF 176

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM+  +   PN+VTY+ L+    + + +D+   + +++  + + P+  TYN ++  Y  
Sbjct: 177 YKMEE-QGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYST 235

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +GM KE   V   M S+   PD+   N  + +  K     +   +F S++    KP + +
Sbjct: 236 SGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVIS 295

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + +++  Y  A      + +F  M      P    +  +I  Y     + ++  +F++++
Sbjct: 296 YGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMT 355

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           K G +  + T + ++ A+C  G   +A   F +  + GV PD++ Y  L +   + N ++
Sbjct: 356 KQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQG--QCNRRD 413

Query: 314 LV--QKLLKRMEQNGIVP 329
           LV  ++L+  M   GI P
Sbjct: 414 LVKAKELISDMLSKGIPP 431



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 148/333 (44%), Gaps = 12/333 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   +S +I+   + G+   AM  F+ M ++G  PD +VY+ LI    + RD  KA  K 
Sbjct: 362 DIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKA--KE 419

Query: 70  LGYFQKMKGMERCKPNIVTY--NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           L      KG+    P  + +  +I+   C + R  +  + +   +H     P++ T+N +
Sbjct: 420 LISDMLSKGI---PPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTG-QRPNLITFNSL 475

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D Y   G +KE   +L  M+S   +PDI T+N L+D Y K    D    +F+ ++H + 
Sbjct: 476 VDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRV 535

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRA 245
             T  ++N ++    +AR    A+ +F +M       S  TY  ++   G C N     A
Sbjct: 536 TLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLG--GLCRNNCTDEA 593

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             + ++L  +     + T N ++ A    G   EA  LF      G+ P   TY+++   
Sbjct: 594 NMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITN 653

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
             K    E    L   ME++   P+ R   E +
Sbjct: 654 LIKEESFEDADNLFSSMEKSSCTPDSRILNEII 686



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 136/297 (45%), Gaps = 8/297 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL-HTRDKAKALAKALGY 72
           Y+ LI      G  + ++ +F EM +S   PD    N+ +TA   H R K     +A   
Sbjct: 226 YNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIK-----EARDI 280

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F  M  ++  KP++++Y  LL   A A  +  ++ LF  +    + PD + +N +++AY 
Sbjct: 281 FDSMV-LKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYA 339

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + GM+ +   +   M      PDIITF+ +I ++ +    D   + F  ++ +   P   
Sbjct: 340 RLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTA 399

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT-YECIITMYGYCDNVSRAREIFDE 251
            ++ +I      R   KA+ +   M +    P  I  +  II        V+  +++ D 
Sbjct: 400 VYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDL 459

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           +   G+   + T N++++ YC+ G   EA  L ++  ++GV PD  TY  L   Y K
Sbjct: 460 IIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCK 516



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 149/341 (43%), Gaps = 13/341 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D G  +  +  + K G+ + A  +F  M   G +PD   Y AL    LH    A  +A
Sbjct: 255 VPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGAL----LHGYATAGCIA 310

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
                F  M   E   P+   +N L+ A A+   +D+   +F+++ +  + PDI T++ V
Sbjct: 311 GMDNLFNVMV-CEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTV 369

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK- 186
           + A+ + G + +     + M      PD   ++ LI     R+   K +++   ++    
Sbjct: 370 ISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGI 429

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P +  F S+I N  K     + + V   +      P+ IT+  ++  Y    N+  A 
Sbjct: 430 PPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAV 489

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            + D +  +G +  + T N +++ YC +G   +A  LF +  +  VT  S +Y ++    
Sbjct: 490 GLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGL 549

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
            +A    + +++   M ++G+         ++ T+++ L G
Sbjct: 550 FQARRTIVAKEMFHEMIESGMA-------VSIHTYATVLGG 583



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 136/306 (44%), Gaps = 10/306 (3%)

Query: 29  LAMWLFSEMRNSGCRPD--PSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERCKP 84
           LA+ LF  M    C P+  P++Y   I  + + R +   L   L  F ++   G+    P
Sbjct: 98  LAVELFKRMDRCAC-PEAAPTIYTYNILINCYRRARRPDLG--LPVFGRLLRTGL---GP 151

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           ++ +YN L+   ++   VD+ + LF ++ E  + P++ TY+ +++   K   + + E VL
Sbjct: 152 DVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVL 211

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
            +M     +P+ +T+N LI  Y     + +  +VFK +  S   P +   NS +    K 
Sbjct: 212 RQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKH 271

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
               +A  +F  M      P  I+Y  ++  Y     ++    +F+ +   G        
Sbjct: 272 GRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVF 331

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N ++ AY   G+  ++ L+FE+    GV PD  T+  +  A+ +    +   +    M  
Sbjct: 332 NTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMID 391

Query: 325 NGIVPN 330
            G+ P+
Sbjct: 392 TGVPPD 397



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 115/254 (45%), Gaps = 11/254 (4%)

Query: 25  GQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP 84
           G  + A+ L   M + G  PD   YN L+  +     K   +  AL  F+ M   +R   
Sbjct: 483 GNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYC----KHGRIDDALTLFRDML-HKRVTL 537

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
             V+YNI+L    QAR       +F E+ ES +A  I+TY  V+    +N    E   +L
Sbjct: 538 TSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLL 597

Query: 145 SRMKSNQCKPDIITFNLLIDS---YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
            ++ S   K DI+TFN++I +    G+RQ   + +++F ++      PT+ T+  MI N 
Sbjct: 598 EKLFSMNVKFDILTFNIVIRAMFKVGRRQ---EAKELFAAISTYGLVPTILTYRVMITNL 654

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            K      A+ +F  M     TP       II M      V++A     ++ K G   + 
Sbjct: 655 IKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEA 714

Query: 262 STLNAMLEAYCMNG 275
           +T + ++  + +NG
Sbjct: 715 TTTSLLIYLFSVNG 728



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 58/138 (42%)

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
           P+  TY  +I  Y           +F  L + G    V + NA+++ +   G   +A  L
Sbjct: 116 PTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDL 175

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
           F      G+ P+  TY  L     K    +  +++L++M   G+ PN   +   +  +S+
Sbjct: 176 FYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYST 235

Query: 344 SLAGSQSGSAKTDLTRSL 361
           S    +S     +++ SL
Sbjct: 236 SGMWKESVRVFKEMSSSL 253


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 152/318 (47%), Gaps = 6/318 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y++LI  +GK G+   A   + EM+   C+PD  V N +I    +   KA  L   
Sbjct: 299 DVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMI----NFLGKAGRLDDG 354

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARN-VDQVNALFKELHESILAPDIYTYNGVM 128
           L  F++M G+  C PN+VTYN +++A  ++++ V +V + F+ +  S ++P  +TY+ ++
Sbjct: 355 LKLFEEM-GVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILI 413

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D + K   I++   +L  M      P    +  LID+ GK + +D   ++F+ L  +   
Sbjct: 414 DGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGS 473

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
            +   +  MI + GKA     A  +F +M+ +  TP+   Y  +++       +  A   
Sbjct: 474 SSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTT 533

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             ++ + G    +++ N +L      G P  A  +  N  N  + PD+ +Y  +  A + 
Sbjct: 534 MRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSH 593

Query: 309 ANMKELVQKLLKRMEQNG 326
           A M E   +L+K M   G
Sbjct: 594 AGMFEEAAELMKEMNALG 611



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 146/333 (43%), Gaps = 6/333 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ +I++  K      A+ LF EMR   CRPD   Y  LI        KA  + +A  +
Sbjct: 267 IYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRG----LGKAGRIDEAYHF 322

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA-Y 131
           + +M+  E CKP+ V  N ++    +A  +D    LF+E+  S   P++ TYN ++ A +
Sbjct: 323 YHEMQ-REDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALF 381

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
                + E+ S   RMK +   P   T+++LID + K    +K   + + +      P  
Sbjct: 382 ESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCP 441

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             + S+I   GKA+    A  +FQ++     + S   Y  +I   G    +  A  +FDE
Sbjct: 442 AAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDE 501

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +SKLG    V   NA++       +  EA          G  PD ++Y ++     K   
Sbjct: 502 MSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGG 561

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
                ++L  M+ + I P+   +   L   S +
Sbjct: 562 PHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHA 594



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 149/350 (42%), Gaps = 34/350 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSG-CRPDPSVYNALITAH--LHTRDKAKALAK-- 68
           Y+ +I ++  +GQ      L++EM N G C PD   Y+ALI+A   L  +D A  L    
Sbjct: 197 YNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEM 256

Query: 69  ---------------------------ALGYFQKMKGMERCKPNIVTYNILLRACAQARN 101
                                      AL  F++M+ M  C+P++ TY  L+R   +A  
Sbjct: 257 KENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYM-YCRPDVFTYTELIRGLGKAGR 315

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
           +D+    + E+      PD    N +++  GK G + +   +   M  + C P+++T+N 
Sbjct: 316 IDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNT 375

Query: 162 LIDS-YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
           +I + +  +    ++   F+ +  S   P+  T++ +I  + K     KA  + ++M   
Sbjct: 376 IIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEK 435

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
            + P    Y  +I   G       A E+F EL +            M++     G   +A
Sbjct: 436 GFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDA 495

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             LF+    +G TP+   Y  L     +A M +     +++M+++G +P+
Sbjct: 496 INLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPD 545



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 134/314 (42%), Gaps = 9/314 (2%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S++I ++G       A+ +F +++   C+P    YN++I   +H     K        + 
Sbjct: 163 SQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHE----LYN 218

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M     C P+ VTY+ L+ A  +    D    L  E+ E+ + P    Y  ++  + K 
Sbjct: 219 EMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKL 278

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
             +    S+   M+   C+PD+ T+  LI   GK    D+    +  +     KP     
Sbjct: 279 DNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVM 338

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N+MI   GKA        +F++M      P+ +TY  II      ++ SR  E+F    +
Sbjct: 339 NNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIK--ALFESKSRVSEVFSWFER 396

Query: 255 L-GKDMKVS--TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + G  +  S  T + +++ +C      +A +L E     G  P  + Y  L  A  KA  
Sbjct: 397 MKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKR 456

Query: 312 KELVQKLLKRMEQN 325
            +L  +L + +++N
Sbjct: 457 YDLACELFQELKEN 470



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 109/228 (47%), Gaps = 7/228 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI    K  +   AM L  EM   G  P P+ Y +LI A      KAK    A   F
Sbjct: 409 YSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDA----LGKAKRYDLACELF 464

Query: 74  QKMKGMERCKPNIV-TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           Q++K  E C  +    Y ++++   +A  +D    LF E+ +    P++Y YN +M    
Sbjct: 465 QELK--ENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLA 522

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           +  M+ E  + + +M+ + C PDI ++N++++   K     +  ++  ++ +S  KP   
Sbjct: 523 RACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAV 582

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           ++N+++     A +  +A  + ++M A+ +    ITY  I+   G  D
Sbjct: 583 SYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGKVD 630



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 124/301 (41%), Gaps = 4/301 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT + + +I  +GK G+    + LF EM  S C P+   YN +I A   ++ +   +++ 
Sbjct: 334 DTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSR---VSEV 390

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
             +F++MKG     P+  TY+IL+    +   +++   L +E+ E    P    Y  ++D
Sbjct: 391 FSWFERMKG-SGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLID 449

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A GK         +   +K N        + ++I   GK    D    +F  +      P
Sbjct: 450 ALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTP 509

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  +N+++    +A +  +A    +KM      P   +Y  I+          RA E+ 
Sbjct: 510 NVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEML 569

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             +          + N +L A    G+  EA  L +  + +G   D  TY  + +A  K 
Sbjct: 570 TNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGKV 629

Query: 310 N 310
           +
Sbjct: 630 D 630



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/234 (19%), Positives = 96/234 (41%), Gaps = 5/234 (2%)

Query: 102 VDQVNALFKELHESILAPDIYT----YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           V+Q   ++K + E + +P         + V+   G   MI +  ++  ++K+ +C+P   
Sbjct: 136 VEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQ 195

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKAEYVFQK 216
            +N +I        ++K+ +++  + +     P   T++++I  + K   Q  A  +  +
Sbjct: 196 AYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNE 255

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M      P+   Y  II+++   DNV  A  +F+E+  +     V T   ++      G 
Sbjct: 256 MKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGR 315

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             EA   +         PD+     +     KA   +   KL + M  +  +PN
Sbjct: 316 IDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPN 369



 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 35/188 (18%)

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN-YGKARLQGKAEYV 213
           D  T+  LI      + + +M ++ + ++ S      P   S +I   G A++ GKA  +
Sbjct: 122 DTSTYMALIHCLELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITI 181

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F ++ A K  P+   Y  +I M  +     +  E+++E+S               E +C 
Sbjct: 182 FYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSN--------------EGHC- 226

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
                               PD+ TY  L  A+ K   ++   +LL  M++NG+ P  + 
Sbjct: 227 -------------------HPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKI 267

Query: 334 FLEALETF 341
           +   +  F
Sbjct: 268 YTMIISLF 275


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 148/321 (46%), Gaps = 13/321 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ +I ++ KKG+ + A  + S +      P+   Y +LI  H    +    L  A   F
Sbjct: 205 FNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHN----LDLAFAMF 260

Query: 74  QKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            +M   + C PN VTY+ L+   C++ R +++   + +E+ +  + P +YTY   + +  
Sbjct: 261 DRMVK-DGCDPNSVTYSTLINGLCSEGR-LEEAMDMLEEMVQKGIEPTVYTYTIPLVSLC 318

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
             G   E   +L +MK   C P+I TF  LI    +   F+    ++  ++     PT  
Sbjct: 319 DAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTV 378

Query: 193 TFNSMIINYGKARLQGKAE---YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           T+N++I    +  ++G+ E    +F+ M +    PS  TY  II  +    ++ +A  IF
Sbjct: 379 TYNALI---NQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIF 435

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D++ K G    V T N ++  YC  G    A  L E     G+ PD+ TY  L   +++ 
Sbjct: 436 DKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRG 495

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              E    L   M ++GI PN
Sbjct: 496 GKLEHATSLFYGMMEHGISPN 516



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 139/330 (42%), Gaps = 7/330 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+R  + +   ++ LI+ + + G+  +A+ L+ +M   G  P    YNALI   L    +
Sbjct: 334 KKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALIN-QLCVEGR 392

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +    A   F+ M       P+  TYN +++      ++ +   +F ++ ++  +P++ 
Sbjct: 393 FET---AFTIFKWMLS-HGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVI 448

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++  Y K G +     +L  MK N  KPD  T+  LI  + +    +    +F  +
Sbjct: 449 TYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGM 508

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           M     P   T+ ++I  Y        A  +F KM      PS  TY  +I+ +   +++
Sbjct: 509 MEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSI 568

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           S A     ++ K G    V T  + ++  C NG    A  +F         P+  TY  L
Sbjct: 569 SEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSL 628

Query: 303 YKAYTKANMKELVQ--KLLKRMEQNGIVPN 330
                +    E  +   LL R+   G  PN
Sbjct: 629 IYGLCQEGRAEDAEMYNLLARLTHYGCEPN 658



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 147/341 (43%), Gaps = 13/341 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    +     LA  +F  M   GC P+   Y+ LI   L +  +   L +A+   
Sbjct: 240 YTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLING-LCSEGR---LEEAMDML 295

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           ++M  KG+E   P + TY I L +   A    +   L  ++ +    P+I T+  ++   
Sbjct: 296 EEMVQKGIE---PTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGL 352

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            ++G  +    +  +M ++   P  +T+N LI+       F+    +FK ++     P+ 
Sbjct: 353 SRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPST 412

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIF 249
            T+N +I  +       KA  +F KM     +P+ ITY  +I  YGYC   N++ A  + 
Sbjct: 413 QTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLI--YGYCKQGNLNNAMRLL 470

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           + +   G      T   ++  +   G    A  LF      G++P+  TY  +   Y   
Sbjct: 471 EIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNL 530

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
              +    L  +M ++G +P+ + +   +  FS + + S++
Sbjct: 531 AKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEA 571



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 132/317 (41%), Gaps = 19/317 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    K+G    AM L   M+ +G +PD   Y  LI+    +R      A +L Y 
Sbjct: 450 YNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGF--SRGGKLEHATSLFYG 507

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
               G+    PN VTY  ++        VD   ALF ++ ES   P   TYN ++  + K
Sbjct: 508 MMEHGI---SPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSK 564

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              I E E+   +M      P++IT+   ID   +        ++F  +      P L T
Sbjct: 565 TNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYT 624

Query: 194 FNSMIINYGKARLQGKAE-----YVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAR 246
           ++S+I  YG  + +G+AE      +  ++T     P+  TY  ++   G C       A 
Sbjct: 625 YSSLI--YGLCQ-EGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVK--GLCGEGRCYEAD 679

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL-LFENSHNMGVTPDSSTYKLLYKA 305
           ++   + K G         A+L   C N L  E+ L +F +   +G     S YK L  A
Sbjct: 680 QLVVSMQKKGLQPSEEIYRALLIGECKN-LKVESALNIFYSMDTLGFQLHLSDYKALICA 738

Query: 306 YTKANMKELVQKLLKRM 322
             K N  E  Q + + M
Sbjct: 739 LCKENFIEEAQCIFQTM 755



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 114/250 (45%), Gaps = 20/250 (8%)

Query: 105 VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD----IITFN 160
           V+ L + + + + AP  +    ++ +    G +K +   LS + S   K D    + +F 
Sbjct: 115 VSMLNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINS---KYDFGYTLCSFT 171

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI-INYGKARLQGKAEYVFQKMTA 219
            L+   GK    D    ++  +++S  +P+L TFN+MI I   K R+Q +A+ +   +  
Sbjct: 172 TLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQ-EAKLIMSHIFR 230

Query: 220 MKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
               P+  TY  +I   G+C   N+  A  +FD + K G D    T + ++   C  G  
Sbjct: 231 YDAYPNAFTYTSLI--LGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRL 288

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEA 337
            EA  + E     G+ P   TY +   +   A       +LL +M++ G VPN       
Sbjct: 289 EEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPN------- 341

Query: 338 LETFSSSLAG 347
           ++TF++ ++G
Sbjct: 342 IQTFTALISG 351



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 129/330 (39%), Gaps = 76/330 (23%)

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           + ++  LL    +   VD    ++ ++  S + P + T+N +++   K G ++E + ++S
Sbjct: 167 LCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMS 226

Query: 146 -----------------------------------RMKSNQCKPDIITFNLLID---SYG 167
                                              RM  + C P+ +T++ LI+   S G
Sbjct: 227 HIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEG 286

Query: 168 K-RQAFDKMEQVFK---------------------------SLMHSKEK----PTLPTFN 195
           +  +A D +E++ +                            L+   +K    P + TF 
Sbjct: 287 RLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFT 346

Query: 196 SMIINYGKARLQGKAEY---VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           ++I   G +R  GK E    ++ KM A    P+ +TY  +I           A  IF  +
Sbjct: 347 ALI--SGLSR-DGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWM 403

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G      T N +++ +C+ G   +A ++F+     G +P+  TY  L   Y K    
Sbjct: 404 LSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNL 463

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
               +LL+ M+ NG+ P+   + E +  FS
Sbjct: 464 NNAMRLLEIMKGNGLKPDAWTYTELISGFS 493


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 148/321 (46%), Gaps = 13/321 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ +I ++ KKG+ + A  + S +      P+   Y +LI  H    +    L  A   F
Sbjct: 205 FNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHN----LDLAFAMF 260

Query: 74  QKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            +M   + C PN VTY+ L+   C++ R +++   + +E+ +  + P +YTY   + +  
Sbjct: 261 DRMVK-DGCDPNSVTYSTLINGLCSEGR-LEEAMDMLEEMVQKGIEPTVYTYTIPLVSLC 318

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
             G   E   +L +MK   C P+I TF  LI    +   F+    ++  ++     PT  
Sbjct: 319 DAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTV 378

Query: 193 TFNSMIINYGKARLQGKAE---YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           T+N++I    +  ++G+ E    +F+ M +    PS  TY  II  +    ++ +A  IF
Sbjct: 379 TYNALI---NQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIF 435

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D++ K G    V T N ++  YC  G    A  L E     G+ PD+ TY  L   +++ 
Sbjct: 436 DKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRG 495

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              E    L   M ++GI PN
Sbjct: 496 GKLEHATSLFYGMMEHGISPN 516



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 139/330 (42%), Gaps = 7/330 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+R  + +   ++ LI+ + + G+  +A+ L+ +M   G  P    YNALI   L    +
Sbjct: 334 KKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALIN-QLCVEGR 392

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +    A   F+ M       P+  TYN +++      ++ +   +F ++ ++  +P++ 
Sbjct: 393 FET---AFTIFKWMLS-HGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVI 448

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++  Y K G +     +L  MK N  KPD  T+  LI  + +    +    +F  +
Sbjct: 449 TYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGM 508

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           M     P   T+ ++I  Y        A  +F KM      PS  TY  +I+ +   +++
Sbjct: 509 MEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSI 568

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           S A     ++ K G    V T  + ++  C NG    A  +F         P+  TY  L
Sbjct: 569 SEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSL 628

Query: 303 YKAYTKANMKELVQ--KLLKRMEQNGIVPN 330
                +    E  +   LL R+   G  PN
Sbjct: 629 IYGLCQEGRAEDAEMYNLLARLTHYGCEPN 658



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 147/341 (43%), Gaps = 13/341 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    +     LA  +F  M   GC P+   Y+ LI   L +  +   L +A+   
Sbjct: 240 YTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLING-LCSEGR---LEEAMDML 295

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           ++M  KG+E   P + TY I L +   A    +   L  ++ +    P+I T+  ++   
Sbjct: 296 EEMVQKGIE---PTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGL 352

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            ++G  +    +  +M ++   P  +T+N LI+       F+    +FK ++     P+ 
Sbjct: 353 SRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPST 412

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIF 249
            T+N +I  +       KA  +F KM     +P+ ITY  +I  YGYC   N++ A  + 
Sbjct: 413 QTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLI--YGYCKQGNLNNAMRLL 470

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           + +   G      T   ++  +   G    A  LF      G++P+  TY  +   Y   
Sbjct: 471 EIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNL 530

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
              +    L  +M ++G +P+ + +   +  FS + + S++
Sbjct: 531 AKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEA 571



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 132/317 (41%), Gaps = 19/317 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    K+G    AM L   M+ +G +PD   Y  LI+    +R      A +L Y 
Sbjct: 450 YNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGF--SRGGKLEHATSLFYG 507

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
               G+    PN VTY  ++        VD   ALF ++ ES   P   TYN ++  + K
Sbjct: 508 MMEHGI---SPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSK 564

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              I E E+   +M      P++IT+   ID   +        ++F  +      P L T
Sbjct: 565 TNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYT 624

Query: 194 FNSMIINYGKARLQGKAE-----YVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAR 246
           ++S+I  YG  + +G+AE      +  ++T     P+  TY  ++   G C       A 
Sbjct: 625 YSSLI--YGLCQ-EGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVK--GLCGEGRCYEAD 679

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL-LFENSHNMGVTPDSSTYKLLYKA 305
           ++   + K G         A+L   C N L  E+ L +F +   +G     S YK L  A
Sbjct: 680 QLVVSMQKKGLQPSEEIYRALLIGECKN-LKVESALNIFYSMDTLGFQLHLSDYKALICA 738

Query: 306 YTKANMKELVQKLLKRM 322
             K N  E  Q + + M
Sbjct: 739 LCKENFIEEAQCIFQTM 755



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 114/250 (45%), Gaps = 20/250 (8%)

Query: 105 VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD----IITFN 160
           V+ L + + + + AP  +    ++ +    G +K +   LS + S   K D    + +F 
Sbjct: 115 VSMLNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINS---KYDFGYTLCSFT 171

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI-INYGKARLQGKAEYVFQKMTA 219
            L+   GK    D    ++  +++S  +P+L TFN+MI I   K R+Q +A+ +   +  
Sbjct: 172 TLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQ-EAKLIMSHIFR 230

Query: 220 MKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
               P+  TY  +I   G+C   N+  A  +FD + K G D    T + ++   C  G  
Sbjct: 231 YDAYPNAFTYTSLI--LGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRL 288

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEA 337
            EA  + E     G+ P   TY +   +   A       +LL +M++ G VPN       
Sbjct: 289 EEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPN------- 341

Query: 338 LETFSSSLAG 347
           ++TF++ ++G
Sbjct: 342 IQTFTALISG 351



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 129/330 (39%), Gaps = 76/330 (23%)

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           + ++  LL    +   VD    ++ ++  S + P + T+N +++   K G ++E + ++S
Sbjct: 167 LCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMS 226

Query: 146 -----------------------------------RMKSNQCKPDIITFNLLID---SYG 167
                                              RM  + C P+ +T++ LI+   S G
Sbjct: 227 HIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEG 286

Query: 168 K-RQAFDKMEQVFK---------------------------SLMHSKEK----PTLPTFN 195
           +  +A D +E++ +                            L+   +K    P + TF 
Sbjct: 287 RLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFT 346

Query: 196 SMIINYGKARLQGKAEY---VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           ++I   G +R  GK E    ++ KM A    P+ +TY  +I           A  IF  +
Sbjct: 347 ALI--SGLSR-DGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWM 403

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G      T N +++ +C+ G   +A ++F+     G +P+  TY  L   Y K    
Sbjct: 404 LSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNL 463

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
               +LL+ M+ NG+ P+   + E +  FS
Sbjct: 464 NNAMRLLEIMKGNGLKPDAWTYTELISGFS 493


>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 621

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 150/358 (41%), Gaps = 45/358 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D+ + + +I      G+   AM +F +M+  GC+P  S YN LI              ++
Sbjct: 129 DSILLNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGF----GIVGRPYES 184

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +   + M   E  KPN  TYNIL++A    + +++   +  ++  S + PD+ TYN +  
Sbjct: 185 MKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMAR 244

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-- 187
           AY +NG  ++ E ++ +M+ N+ KP+  T  ++I  Y K      M +  + L   KE  
Sbjct: 245 AYAQNGETEKAERLILKMQYNKVKPNERTCGIIISGYCKE---GNMTEALRFLYRMKELG 301

Query: 188 -KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P    FNS+I  Y  A      +     M      P  +T+  I+  +     +    
Sbjct: 302 VHPNPVVFNSLIKGYLDATDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMDNCE 361

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF---------------------- 284
           EIF+++ K G +  +   + + + Y   G P +A+ L                       
Sbjct: 362 EIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGW 421

Query: 285 -------------ENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
                        E  H MG +P+  TY+ L   Y +A      +++L  ME+ G+VP
Sbjct: 422 CAAGKMDRAFSLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEEILSTMEERGVVP 479



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 150/322 (46%), Gaps = 6/322 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+A + ++ + +    L S++ ++G +PD  + NA+I A     D  K + +A+  F
Sbjct: 98  YTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAF---SDSGK-VDEAMKIF 153

Query: 74  QKMKGMERCKPNIVTYNILLRACA-QARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           QKMK    CKP   TYN L++      R  + +  L     +  + P+  TYN ++ A+ 
Sbjct: 154 QKMKEY-GCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWC 212

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
               ++E  +VL +M ++  +PD++T+N +  +Y +    +K E++   + ++K KP   
Sbjct: 213 TKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAERLILKMQYNKVKPNER 272

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T   +I  Y K     +A     +M  +   P+ + +  +I  Y    + +   E    +
Sbjct: 273 TCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEALTLM 332

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            + G    V T + ++ A+   GL    + +F +    G+ PD   Y +L K Y +A   
Sbjct: 333 EEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQP 392

Query: 313 ELVQKLLKRMEQNGIVPNKRFF 334
              + LL  M + G+  N   F
Sbjct: 393 RKAESLLTSMSKYGVQTNVVIF 414



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 112/263 (42%), Gaps = 1/263 (0%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           KP ++TY  L+ A  + +    + AL  ++ ++ + PD    N +++A+  +G + E   
Sbjct: 92  KPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSDSGKVDEAMK 151

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYG-KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           +  +MK   CKP   T+N LI  +G   + ++ M+ +         KP   T+N +I  +
Sbjct: 152 IFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMGQDENVKPNDRTYNILIQAW 211

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
              +   +A  V  KM A    P  +TY  +   Y       +A  +  ++         
Sbjct: 212 CTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAERLILKMQYNKVKPNE 271

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T   ++  YC  G  TEA         +GV P+   +  L K Y  A     V + L  
Sbjct: 272 RTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEALTL 331

Query: 322 MEQNGIVPNKRFFLEALETFSSS 344
           ME+ GI P+   F   +  +SS+
Sbjct: 332 MEEFGIKPDVVTFSTIMNAWSSA 354



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 128/279 (45%), Gaps = 5/279 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +     + G+T  A  L  +M+ +  +P+      +I+ +     K   + +A
Sbjct: 235 DVVTYNTMARAYAQNGETEKAERLILKMQYNKVKPNERTCGIIISGYC----KEGNMTEA 290

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L +  +MK +    PN V +N L++    A + + V+     + E  + PD+ T++ +M+
Sbjct: 291 LRFLYRMKEL-GVHPNPVVFNSLIKGYLDATDTNGVDEALTLMEEFGIKPDVVTFSTIMN 349

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A+   G++   E + + M     +PDI  +++L   Y +     K E +  S+     + 
Sbjct: 350 AWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSMSKYGVQT 409

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  F ++I  +  A    +A  + +KM  M  +P+  TYE +I  YG      +A EI 
Sbjct: 410 NVVIFTTIISGWCAAGKMDRAFSLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEEIL 469

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
             + + G   ++ST+  + +A+   GL  EA+ +   S 
Sbjct: 470 STMEERGVVPEMSTMQLVADAWRAIGLFKEANRILNGSE 508



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 106/237 (44%), Gaps = 11/237 (4%)

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +  A+F  L E    P + TY  ++ A  +    K + ++LS++  N  KPD I  N +I
Sbjct: 78  EAQAVFHNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMI 137

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM--- 220
           +++      D+  ++F+ +     KPT  T+N++I  +G   + G+  Y   K+  M   
Sbjct: 138 NAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFG---IVGRP-YESMKLLEMMGQ 193

Query: 221 --KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
                P+  TY  +I  +     +  A  +  ++   G    V T N M  AY  NG   
Sbjct: 194 DENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETE 253

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKLLKRMEQNGIVPNKRFF 334
           +A+ L        V P+  T  ++   Y K  NM E + + L RM++ G+ PN   F
Sbjct: 254 KAERLILKMQYNKVKPNERTCGIIISGYCKEGNMTEAL-RFLYRMKELGVHPNPVVF 309



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 97/216 (44%), Gaps = 7/216 (3%)

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           ++    +M+A    G   E ++V   +     KP +IT+  L+ +  +++ F  +  +  
Sbjct: 60  VHARTKLMNALIGKGKPHEAQAVFHNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLS 119

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +  +  KP     N+MI  +  +    +A  +FQKM      P+  TY  +I  +G   
Sbjct: 120 KVADNGMKPDSILLNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGI-- 177

Query: 241 NVSRAREIFDELSKLGKDMKVS----TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
            V R  E    L  +G+D  V     T N +++A+C      EA  +       G+ PD 
Sbjct: 178 -VGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDV 236

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
            TY  + +AY +    E  ++L+ +M+ N + PN+R
Sbjct: 237 VTYNTMARAYAQNGETEKAERLILKMQYNKVKPNER 272


>gi|298707411|emb|CBJ30040.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 564

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 146/335 (43%), Gaps = 5/335 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA-- 67
           D   YS L++ + + G+    + L   MR+ G  PD   + A + A        +A+A  
Sbjct: 68  DVYTYSVLMSAVARSGRWEEVLVLLDVMRSEGVAPDHFAFGAAVNACAKGGQWERAVALL 127

Query: 68  --KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
             +AL    +M  +    PN+ T++  + AC  A   ++   L  ++ E  + P+ +T++
Sbjct: 128 DQRALRLLGEMAAVG-LSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFS 186

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
             + A GK G  +   ++L RM++  C P++ T+   ID+ GK   +   + +   +   
Sbjct: 187 AAVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREK 246

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P + TFNS I   G      +A  + + M +M   P+  +Y   +T  G  +  +RA
Sbjct: 247 GVAPNVITFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWARA 306

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             + +++   G      +  A ++A    G    A  L +   + G+ P   ++     A
Sbjct: 307 LAVHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRSFSTAISA 366

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFFLEALET 340
             K         LL+ ME+ G+ PN+  F  A++ 
Sbjct: 367 CGKGQQWGRAVALLREMEEVGVSPNEVSFNAAIDA 401



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 117/262 (44%), Gaps = 6/262 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +S  ++  GK GQ R A+ +   MR + C P+   Y A I A      KA     A G  
Sbjct: 185 FSAAVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDAC----GKAGEWRLAQGLL 240

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+  +   PN++T+N  + A        +   L +++    + P++++Y   + A G 
Sbjct: 241 AEMR-EKGVAPNVITFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGD 299

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           N       +V  +M+S   + D ++F   ID+  +  A++    +   +      PT+ +
Sbjct: 300 NNRWARALAVHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRS 359

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           F++ I   GK +  G+A  + ++M  +  +P+ +++   I   G       A  + D++S
Sbjct: 360 FSTAISACGKGQQWGRAVALLREMEEVGVSPNEVSFNAAIDACGRAGQWRAALSLLDKMS 419

Query: 254 KLGKDMKVSTLNAMLEAYCMNG 275
             G      T NA++ A C  G
Sbjct: 420 SAGVPRGTITYNAVI-AACGKG 440



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 118/282 (41%), Gaps = 15/282 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+  I   GK G+ RLA  L +EMR  G  P+   +N+ I+A            +AL   
Sbjct: 220 YTAAIDACGKAGEWRLAQGLLAEMREKGVAPNVITFNSAISAL----GNGGQWQEALNLL 275

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M  M   +PN+ +Y   + AC       +  A+ +++    +  D  ++   +DA  +
Sbjct: 276 RDMPSMG-VQPNMWSYTAAVTACGDNNRWARALAVHEQMRSRGIRGDEVSFTAAIDACAQ 334

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G  +   ++L  M+     P + +F+  I + GK Q + +   + + +      P   +
Sbjct: 335 GGAWEMALALLDEMRDEGIPPTVRSFSTAISACGKGQQWGRAVALLREMEEVGVSPNEVS 394

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG----YCDNVSRAREIF 249
           FN+ I   G+A     A  +  KM++       ITY  +I   G    +   VS  RE+ 
Sbjct: 395 FNAAIDACGRAGQWRAALSLLDKMSSAGVPRGTITYNAVIAACGKGKEWARAVSVLREML 454

Query: 250 DELSKLGKDM------KVSTLNAMLEAYCMNGLPTEADLLFE 285
              +K   DM       V + +A ++A    G   EA  L E
Sbjct: 455 AGQAKTDGDMAPVPMADVVSYSAAIDACVRAGEWEEAISLVE 496



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 84/225 (37%), Gaps = 27/225 (12%)

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D+YTY+ +M A  ++G  +E+  +L  M+S    PD   F   +++  K   +++     
Sbjct: 68  DVYTYSVLMSAVARSGRWEEVLVLLDVMRSEGVAPDHFAFGAAVNACAKGGQWER----- 122

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
                                   A L  +A  +  +M A+  +P+  T+   +   G  
Sbjct: 123 ----------------------AVALLDQRALRLLGEMAAVGLSPNVTTFSSAVAACGNA 160

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
               RA  + D++++ G      T +A + A    G    A  +          P+  TY
Sbjct: 161 GQWERALGLLDQMAEEGVPPNEFTFSAAVSACGKAGQWRPALTILRRMRAANCPPNVQTY 220

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
                A  KA    L Q LL  M + G+ PN   F  A+    + 
Sbjct: 221 TAAIDACGKAGEWRLAQGLLAEMREKGVAPNVITFNSAISALGNG 265


>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
 gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
 gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 145/324 (44%), Gaps = 10/324 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  YS LI+  GK  +   A+ LF EM+ +G +P   +Y  L+  +     K   + +A
Sbjct: 230 DTVTYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYF----KLGKVEEA 285

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L    +M+ M RC P + TY  L+R   ++  V+    ++K + +    PD+   N +++
Sbjct: 286 LNLVHEMR-MRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLIN 344

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
             G++  +KE   +   M+   C P+++T+N +I S  + +A     +    L   K+  
Sbjct: 345 ILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKA--PPSEASSWLERMKKDG 402

Query: 190 TLP---TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P   T++ +I  + K     KA  + ++M    + P    Y  +I   G       A 
Sbjct: 403 VVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAAN 462

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+F EL +      V     M++ +   G   EA  LF     +G  PD   Y  L    
Sbjct: 463 ELFQELKENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGM 522

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            +A+M +    L + ME+NG  P+
Sbjct: 523 VRADMMDEAFSLFRTMEENGCNPD 546



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 136/315 (43%), Gaps = 38/315 (12%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S+++ ++G+      A+ +F +++   CRP    YN++I   +      K        + 
Sbjct: 164 SEIVKILGRVKMVNKALSIFYQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHE----LYN 219

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M     C P+ VTY+ L+ A  +    D    LF E+ E+ L P    Y  +M  Y K 
Sbjct: 220 EMCSEGHCFPDTVTYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKL 279

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G ++E  +++  M+  +C P + T+  LI   GK    +    V+K+++    KP +   
Sbjct: 280 GKVEEALNLVHEMRMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLM 339

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N++I   G++    +A  +F++M  +  TP+ +TY  II            + +F++ + 
Sbjct: 340 NNLINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTII------------KSLFEDKAP 387

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
                                 P+EA    E     GV P S TY +L   + K N  E 
Sbjct: 388 ----------------------PSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEK 425

Query: 315 VQKLLKRMEQNGIVP 329
              LL+ M++ G  P
Sbjct: 426 ALLLLEEMDEKGFPP 440



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 111/239 (46%), Gaps = 7/239 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+   +  +  YS LI    K  +   A+ L  EM   G  P P+ Y +LI    ++  K
Sbjct: 399 KKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLI----NSLGK 454

Query: 63  AKALAKALGYFQKMKGMERCKPNIV-TYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           AK    A   FQ++K  E C  + V  Y ++++   +    ++   LF E+ +    PD+
Sbjct: 455 AKRYEAANELFQELK--ENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDV 512

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           Y YN ++    +  M+ E  S+   M+ N C PDI + N++++   +     +  ++F  
Sbjct: 513 YAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAK 572

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           +  S  KP   ++N+++    +A L  +A  + ++M +  +    ITY  I+   G  D
Sbjct: 573 MKSSTIKPDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKGFEYDLITYSSILEAVGKVD 631



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 131/301 (43%), Gaps = 4/301 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  + + LI ++G+  + + A+ LF EMR   C P+   YN +I +     DKA   ++A
Sbjct: 335 DVVLMNNLINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTIIKSLFE--DKAPP-SEA 391

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
             + ++MK  +   P+  TY+IL+    +   V++   L +E+ E    P    Y  +++
Sbjct: 392 SSWLERMKK-DGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIN 450

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           + GK    +    +   +K N     +  + ++I  +GK   F++   +F  +      P
Sbjct: 451 SLGKAKRYEAANELFQELKENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIP 510

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  +N++I    +A +  +A  +F+ M      P   ++  I+          RA E+F
Sbjct: 511 DVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMF 570

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            ++          + N +L      GL  EA  L +  ++ G   D  TY  + +A  K 
Sbjct: 571 AKMKSSTIKPDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKGFEYDLITYSSILEAVGKV 630

Query: 310 N 310
           +
Sbjct: 631 D 631



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 113/281 (40%), Gaps = 39/281 (13%)

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           TY  L+R   + R V ++    +++ +S  A      + ++   G+  M+ +  S+  ++
Sbjct: 127 TYMALIRCLDENRLVGELWRTIQDMVKSPCAIGPSELSEIVKILGRVKMVNKALSIFYQV 186

Query: 148 KSNQCKPD------------------------------------IITFNLLIDSYGKRQA 171
           K  +C+P                                      +T++ LI ++GK   
Sbjct: 187 KGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSALISAFGKLNR 246

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
            D   ++F  +  +  +PT   + +++  Y K     +A  +  +M   +  P+  TY  
Sbjct: 247 DDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTE 306

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           +I   G    V  A  ++  + K G    V  +N ++     +    EA  LFE    + 
Sbjct: 307 LIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLN 366

Query: 292 VTPDSSTYKLLYKAY--TKANMKELVQKLLKRMEQNGIVPN 330
            TP+  TY  + K+    KA   E     L+RM+++G+VP+
Sbjct: 367 CTPNVVTYNTIIKSLFEDKAPPSE-ASSWLERMKKDGVVPS 406



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 86/212 (40%), Gaps = 1/212 (0%)

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D  TY  ++    +N ++ E+   +  M  + C       + ++   G+ +  +K   +F
Sbjct: 124 DSTTYMALIRCLDENRLVGELWRTIQDMVKSPCAIGPSELSEIVKILGRVKMVNKALSIF 183

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT-PSFITYECIITMYGY 238
             +   K +PT  T+NS+I+   +     K   ++ +M +  +  P  +TY  +I+ +G 
Sbjct: 184 YQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSALISAFGK 243

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
            +    A  +FDE+ + G          ++  Y   G   EA  L          P   T
Sbjct: 244 LNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYT 303

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y  L +   K+   E    + K M ++G  P+
Sbjct: 304 YTELIRGLGKSGRVEDAYGVYKNMLKDGCKPD 335


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 140/298 (46%), Gaps = 5/298 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           ++ EM  SG   +   YN LI         A  L   L +F++M+   RC PN+VTYN +
Sbjct: 190 VYREMIASGVSLNVFSYNILIRGFC----AAGNLEMGLRFFEEME-RNRCLPNVVTYNTV 244

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           + A  + + +D+   L + +    L P++ TYN V++   + G I+E   VL+ M     
Sbjct: 245 IGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGF 304

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            PD +T+N L++ Y K   F +   +   ++ +   P + T+ S+I    KA    +A  
Sbjct: 305 APDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAME 364

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
            F +M      P+ +TY  +I  +     +  A  I+DE+ + G    + T NA+L  +C
Sbjct: 365 FFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHC 424

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           ++G   EA  L       G++PD  +Y  +   + +    +   ++   M + G+ P+
Sbjct: 425 VSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPD 482



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 171/409 (41%), Gaps = 59/409 (14%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++ +  D   Y+ L+    K G    A+ L SEM  +G  PD   Y +LI    +T  KA
Sbjct: 301 RKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLI----NTMCKA 356

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L +A+ +F +M  +   +PN VTY  L+   +Q   +D+   ++ E+  S   P I T
Sbjct: 357 GNLNRAMEFFDQMH-VRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVT 415

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN +++ +  +G ++E   +L  M+     PD+++++ +I  + + Q  D+  Q+   ++
Sbjct: 416 YNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMV 475

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DN 241
                P   T++S+I    + R   +A  +FQ+M      P   TY  +I   GYC   +
Sbjct: 476 EKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLIN--GYCKEGD 533

Query: 242 VSRAREIFDELSKLG--------------------------------------------- 256
           ++ A  + DE+ K G                                             
Sbjct: 534 LNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDT 593

Query: 257 -----KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
                 D++  ++ A+++ +CM GL  EAD +FE+       P+ + Y ++   + +   
Sbjct: 594 LIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGN 653

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRS 360
                KL K M   G +P+    +  ++   S     Q      D+ RS
Sbjct: 654 VHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEGMDEQLNLVIRDILRS 702



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 143/321 (44%), Gaps = 11/321 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI      G   + +  F EM  + C P+   YN +I A+     K K + +A    
Sbjct: 206 YNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYC----KLKRIDEAFKLL 261

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M G+E  +PN++TYN+++    +   +++ + +  E+     APD  TYN +++ Y K
Sbjct: 262 RSM-GLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCK 320

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G   +   + S M  N   PD++T+  LI++  K    ++  + F  +     +P   T
Sbjct: 321 VGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVT 380

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + S+I  + +     +A  ++ +M    + P+ +TY  ++  +     +  A  +   + 
Sbjct: 381 YTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGME 440

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKAYTKAN 310
             G    V + + ++  +C      E D  F+ +  M   GV+PD+ TY  L +   +  
Sbjct: 441 GKGLSPDVVSYSTIIAGFCRY---QELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQR 497

Query: 311 MKELVQKLLKRMEQNGIVPNK 331
                  L + M    ++P++
Sbjct: 498 RLNEACDLFQEMLNKSLLPDE 518



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/276 (20%), Positives = 117/276 (42%), Gaps = 8/276 (2%)

Query: 72  YFQKMKGME-RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           +FQ +K     C  +   +++++++C+    +++   +      +   P + +YN ++D+
Sbjct: 117 FFQCLKDTYFMCNSSSAVFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDS 176

Query: 131 YGK-NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
             +    +   E V   M ++    ++ ++N+LI  +      +   + F+ +  ++  P
Sbjct: 177 IVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLP 236

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE-- 247
            + T+N++I  Y K +   +A  + + M      P+ +TY  +I   G C  V R  E  
Sbjct: 237 NVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVIN--GLC-RVGRIEETS 293

Query: 248 -IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+ + G      T N ++  YC  G   +A +L       G+ PD  TY  L    
Sbjct: 294 GVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTM 353

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            KA       +   +M   G+ PN   +   +  FS
Sbjct: 354 CKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFS 389


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 162/343 (47%), Gaps = 23/343 (6%)

Query: 1   MQKQRWYIADTGIYSKLIAVMG--KKGQTRL--AMWLFSEMRNSGCRPDPSVYNALITAH 56
           M+K    +A TG Y+ ++  +    K   RL  AM  F EM+ SG  PD   Y+ L++A 
Sbjct: 128 MRKSSSSVA-TGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSA- 185

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
               D  + +A+A   F  M     C P+I+TYN+L+    +     +  +L KE+ ++ 
Sbjct: 186 --LSDSGR-MAEAHALFSAMT----CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAG 238

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
             P+++TY+ +++ Y K   ++E   V  +M  + C P+ +TFN LI  + K    +   
Sbjct: 239 YEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAI 298

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQG--KAEYVFQKMTAMKYTPSFITYECIIT 234
           ++F  +     K T+ T+N++I +  K R  G   A  +F K+     TP+ +TY  +I 
Sbjct: 299 KLFAEMEKIGCKATIVTYNTLIDSLCKKR-GGVYTAVDLFNKLEGAGLTPTIVTYNSLIQ 357

Query: 235 MYGYCD--NVSRAREIFDELSKLGKDM-KVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
             G+CD   +S A + FDE+   GK    V T + +++  C      EA    E+    G
Sbjct: 358 --GFCDARRLSEAMQYFDEME--GKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHG 413

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            TP   TY  L   + K    +      ++M+  G  PN   F
Sbjct: 414 YTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIF 456



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 148/365 (40%), Gaps = 53/365 (14%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD--KAKALAKAL- 70
           Y  L++ +   G+   A  LFS M    C PD   YN L+  +       +A++L K + 
Sbjct: 179 YHILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEIL 235

Query: 71  --GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
             GY          +PN+ TY+I++    +   V++   +F ++ ES   P+  T+N ++
Sbjct: 236 KAGY----------EPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLI 285

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-RQAFDKMEQVFKSLMHSKE 187
             + K GM+++   + + M+   CK  I+T+N LIDS  K R        +F  L  +  
Sbjct: 286 AGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGL 345

Query: 188 KPTLPTFNSMIINYGKAR-----------LQGK-----------------------AEYV 213
            PT+ T+NS+I  +  AR           ++GK                       A   
Sbjct: 346 TPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGKCAPNVITYSILIDGLCKVRRMKEAAKT 405

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
            + M A  YTP+ +TY  +I  +  C  +  A   F+++   G        N +++  C 
Sbjct: 406 LEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCK 465

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
                +   L  + H  G  PD  TY  L      AN  E  Q+L   M     V    F
Sbjct: 466 AERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGMACAPNVTTFNF 525

Query: 334 FLEAL 338
            +  L
Sbjct: 526 LIRGL 530



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 151/335 (45%), Gaps = 46/335 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA------ 67
           Y+ LI    K GQ   A+ +FS+M++SG  P+ S  N L+         + AL       
Sbjct: 35  YNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQ 94

Query: 68  -------------------------KALGYFQKMKGMERCKPNIV--TYNILLRA-CAQ- 98
                                     AL + Q M+   +   ++   TYN++L+  C + 
Sbjct: 95  AGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMR---KSSSSVATGTYNLVLKGLCWEN 151

Query: 99  --ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
             A  ++Q    FKE+  S + PD+ +Y+ ++ A   +G + E  ++ S M    C PDI
Sbjct: 152 KSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAM---TCSPDI 208

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           +T+N+L+D Y K     + + + K ++ +  +P + T++ +I  Y K     +A  VF K
Sbjct: 209 MTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMK 268

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC--MN 274
           M      P+ +T+  +I  +     +  A ++F E+ K+G    + T N ++++ C    
Sbjct: 269 MIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRG 328

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           G+ T  D LF      G+TP   TY  L + +  A
Sbjct: 329 GVYTAVD-LFNKLEGAGLTPTIVTYNSLIQGFCDA 362



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 114/240 (47%), Gaps = 14/240 (5%)

Query: 14  YSKLI-AVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           Y+ LI ++  K+G    A+ LF+++  +G  P    YN+LI         A+ L++A+ Y
Sbjct: 316 YNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFC----DARRLSEAMQY 371

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F +M+G  +C PN++TY+IL+    + R + +     +++      P + TY G+++ + 
Sbjct: 372 FDEMEG--KCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFC 429

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G +K       +MK   C P+ + FN LID   K +  +   ++   +     KP + 
Sbjct: 430 KCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVI 489

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFD 250
           T+N +I     A     A+ +F  M      P+  T+  +I   G C    V  AR I D
Sbjct: 490 TYNCLISGLCSANRVEDAQRLFDGMAC---APNVTTFNFLIR--GLCAQKKVEEARNILD 544



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 107/250 (42%), Gaps = 17/250 (6%)

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           N LL     AR  DQ   LFKE+   + AP+ +TYN ++  + K G + +  SV S MKS
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
           +   P+  T N L+    +     +M    K     +  P LPT  S  I      + G+
Sbjct: 61  SGLLPNASTMNTLLLGLCE---IGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGR 117

Query: 210 AEYVFQKMTAMKYTPSFI---TYECIITMYGYC------DNVSRAREIFDELSKLGKDMK 260
                  +  M+ + S +   TY   + + G C      + + +A E F E+   G +  
Sbjct: 118 VRDALAHLQDMRKSSSSVATGTYN--LVLKGLCWENKSANRLEQAMEFFKEMKASGVEPD 175

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           + + + +L A   +G   EA  LF     M  +PD  TY +L   Y K       Q L+K
Sbjct: 176 LESYHILLSALSDSGRMAEAHALFS---AMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMK 232

Query: 321 RMEQNGIVPN 330
            + + G  PN
Sbjct: 233 EILKAGYEPN 242



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 132/307 (42%), Gaps = 29/307 (9%)

Query: 50  NALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALF 109
           NAL++  +  R   +AL     + + + G+    PN  TYN+L+R   +   + Q  ++F
Sbjct: 1   NALLSGLVSARKHDQALRL---FKEVLAGLF--APNAHTYNVLIRGFCKGGQMHQAVSVF 55

Query: 110 KELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY--- 166
            ++  S L P+  T N ++    + G +     +   M++    P   + N+L+  +   
Sbjct: 56  SDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMA 115

Query: 167 GK-RQAFDKMEQVFKSLMHSKEKPTLPTFNSMII-----NYGKARLQGKAEYVFQKMTAM 220
           G+ R A   ++ + K    S       T+N ++      N    RL+   E+ F++M A 
Sbjct: 116 GRVRDALAHLQDMRK----SSSSVATGTYNLVLKGLCWENKSANRLEQAMEF-FKEMKAS 170

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
              P   +Y  +++       ++ A  +F   S +     + T N +++ YC  G   EA
Sbjct: 171 GVEPDLESYHILLSALSDSGRMAEAHALF---SAMTCSPDIMTYNVLMDGYCKIGQTYEA 227

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALET 340
             L +     G  P+  TY ++   Y K +  E   ++  +M ++  VPN         T
Sbjct: 228 QSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAV-------T 280

Query: 341 FSSSLAG 347
           F++ +AG
Sbjct: 281 FNTLIAG 287



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 8/142 (5%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K   Y      Y  LI    K G+ + A+  F +M+ +GC P+  ++N LI   L   ++
Sbjct: 410 KAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDG-LCKAER 468

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A    + L +       E CKP+++TYN L+     A  V+    LF  +     AP++ 
Sbjct: 469 ANDGLRLLCHMHA----EGCKPDVITYNCLISGLCSANRVEDAQRLFDGM---ACAPNVT 521

Query: 123 TYNGVMDAYGKNGMIKEMESVL 144
           T+N ++        ++E  ++L
Sbjct: 522 TFNFLIRGLCAQKKVEEARNIL 543


>gi|410110105|gb|AFV61132.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           aristata]
          Length = 382

 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 141/294 (47%), Gaps = 6/294 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YNA+I        KAK   +
Sbjct: 3   GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFRE 58

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +MK      PN  +Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 59  ARSLIGEMKA-AGVMPNTXSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMI 117

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +     +
Sbjct: 118 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIE 177

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSM++ YGK     KA  + Q+M +    P+ ITY  II+++G    + RA  +
Sbjct: 178 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAML 237

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKL 301
           F +L   G ++       M+ AY   GL   A  LL E      +  D++ + L
Sbjct: 238 FQKLRSSGIEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHIL 291



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 130/263 (49%), Gaps = 1/263 (0%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +KA+  F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  +Y+ 
Sbjct: 22  SKAISIFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYST 80

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +    
Sbjct: 81  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG      +A 
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G +    T + ++  +   G    A +LF+   + G+  D   ++ +  AY
Sbjct: 201 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAY 260

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            +A +    ++LL  +++   +P
Sbjct: 261 ERAGLVAHAKRLLHELKRPDNIP 283



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 147/331 (44%), Gaps = 15/331 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L  EM+ +G  P+   Y+ L+T ++     
Sbjct: 32  KRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTMYVEN--- 88

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   +AL  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ 
Sbjct: 89  -KKFLEALSVFSEMREI-KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 146

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++  YG   +  E   +   M+    + +++T+N ++  YGK    +K   + + +
Sbjct: 147 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 206

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P   T++++I  +GK     +A  +FQK+ +       I ++ +I  Y     V
Sbjct: 207 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLV 266

Query: 243 SRAREIFDELSK---LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           + A+ +  EL +   + +D  +  L          G   EA  +F  + + G   D + +
Sbjct: 267 AHAKRLLHELKRPDNIPRDTAIHILAGA-------GRIEEATYVFRQAIDAGEVKDITVF 319

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + +    +K      V ++  +M   G  P+
Sbjct: 320 ERMIHLLSKYKKYSNVVEVFDKMRGLGYFPD 350



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 118/250 (47%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           ++V Y+ L+    +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  S++
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             MK+    P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+ 
Sbjct: 64  GEMKAAGVMPNTXSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
            +  +A+ +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T 
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N+M+  Y       +A+ L +   + G+ P+S TY  +   + K    +    L +++  
Sbjct: 184 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 243

Query: 325 NGIVPNKRFF 334
           +GI  ++  F
Sbjct: 244 SGIEIDQILF 253


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 153/331 (46%), Gaps = 13/331 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++  +     Y+ LI    ++G+   A+ +   M ++ CRP+   YN LI        K 
Sbjct: 382 EKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGF----SKR 437

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           K + KA+    KM    +  P++VTYN L+    +A + D    L   L E+ L PD +T
Sbjct: 438 KHVHKAMTLLSKMLE-SKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWT 496

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+  +D   K+  ++E   + + +K    K + + +  LID + K    D+   + +  M
Sbjct: 497 YSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLER-M 555

Query: 184 HSKE-KPTLPTFNSMIINYGKARLQGKAE---YVFQKMTAMKYTPSFITYECIITMYGYC 239
           HS++  P   T+NS+I  YG  + +GK +    + + M+ M   P+  TY  +I      
Sbjct: 556 HSEDCLPNSSTYNSLI--YGVCK-EGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLRE 612

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            +   A  +F+++   G    V T  A +  YC +G   EA+ +       GV PDS TY
Sbjct: 613 GDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTY 672

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            LL  AY +  +      +LKRM   G  P+
Sbjct: 673 TLLISAYERLGLAYDAFNVLKRMLDAGCDPS 703



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 157/367 (42%), Gaps = 42/367 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + + G+    + LF +MR   C P    Y  +I A L   D+     + +  F
Sbjct: 287 YTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHA-LFGNDRN---LEGMDLF 342

Query: 74  QKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            +M+  ER C+PN+ TY +++ A  + R +D+   +  E+ E  L P + TYN ++  Y 
Sbjct: 343 NEMR--ERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYC 400

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + G I+    +L  M+SN C+P+  T+N LI  + KR+   K   +   ++ SK  P+L 
Sbjct: 401 EEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLV 460

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT-------MYGYCDNVSRA 245
           T+NS+I    KA     A  +   +      P   TY   I        M   CD  +  
Sbjct: 461 TYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSL 520

Query: 246 RE------------IFDELSKLGK-DMKVS---------------TLNAMLEAYCMNGLP 277
           +E            + D   K GK D  +S               T N+++   C  G  
Sbjct: 521 KEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKV 580

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEA 337
            E   + EN   MGV P  +TY +L +   +    +   ++  +M   G  P+   +   
Sbjct: 581 QEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAF 640

Query: 338 LETFSSS 344
           + T+ +S
Sbjct: 641 IHTYCTS 647



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 145/322 (45%), Gaps = 7/322 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D+  Y+ LI    +      A  +F+ M N GCR +   Y  +I    H   +A  + + 
Sbjct: 248 DSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTII----HGLCEAGRIDEG 303

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRAC-AQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           +  F+KM+  + C P + TY +++ A     RN++ ++ LF E+ E    P+++TY  ++
Sbjct: 304 ISLFKKMRE-DDCYPTVRTYTVIIHALFGNDRNLEGMD-LFNEMRERSCEPNVHTYTVMV 361

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           DA  K   + E   +L+ M      P ++T+N LI  Y +    +   ++   +  +  +
Sbjct: 362 DAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCR 421

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   T+N +I  + K +   KA  +  KM   K TPS +TY  +I +     +   A ++
Sbjct: 422 PNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKL 481

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            D L + G      T +  ++  C +    EA  LF +    G+  +   Y  L   + K
Sbjct: 482 LDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCK 541

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
           A   +    LL+RM     +PN
Sbjct: 542 AGKIDEAISLLERMHSEDCLPN 563



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 96/197 (48%), Gaps = 7/197 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K++   A+  +Y+ LI    K G+   A+ L   M +  C P+ S YN+LI        K
Sbjct: 521 KEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVC----K 576

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              + + L   + M  M   KP + TY IL+    +  + D  N +F ++      PD+Y
Sbjct: 577 EGKVQEGLSMVENMSKMG-VKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVY 635

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ-AFDKMEQVFKS 181
           TY   +  Y  +G +KE E +++RM      PD +T+ LLI +Y +   A+D    V K 
Sbjct: 636 TYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAF-NVLKR 694

Query: 182 LMHSKEKPTLPTFNSMI 198
           ++ +   P+ P +N++I
Sbjct: 695 MLDAGCDPSHPIWNNLI 711



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 117/260 (45%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           K ++ +YN LL   A+   +D++  ++ E+   ++ P+IYT N +++AY K G I E   
Sbjct: 176 KLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANL 235

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
            +S++      PD  T+  LI  Y +    +   +VF  + +   +    ++ ++I    
Sbjct: 236 YVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLC 295

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           +A    +   +F+KM      P+  TY  II      D      ++F+E+ +   +  V 
Sbjct: 296 EAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVH 355

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T   M++A C      E+  +       G+ P   TY  L + Y +    E   ++L  M
Sbjct: 356 TYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLM 415

Query: 323 EQNGIVPNKRFFLEALETFS 342
           E N   PN+R + E +  FS
Sbjct: 416 ESNNCRPNERTYNELICGFS 435



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 127/316 (40%), Gaps = 45/316 (14%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN--------- 134
           PNI T N ++ A ++  N+ + N    ++ ++ L+PD +TY  ++  Y +N         
Sbjct: 212 PNIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKV 271

Query: 135 --------------------------GMIKEMESVLSRMKSNQCKPDIITFNLLIDS-YG 167
                                     G I E  S+  +M+ + C P + T+ ++I + +G
Sbjct: 272 FNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFG 331

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
             +  + M+ +F  +     +P + T+  M+    K R   ++  +  +M      PS +
Sbjct: 332 NDRNLEGMD-LFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVV 390

Query: 228 TYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
           TY  +I   GYC+   +  A EI   +          T N ++  +       +A  L  
Sbjct: 391 TYNALIR--GYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLS 448

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 345
                 +TP   TY  L     KA   +   KLL  +++NG+VP++  +      F  +L
Sbjct: 449 KMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTY----SVFIDTL 504

Query: 346 AGSQSGSAKTDLTRSL 361
             S+      DL  SL
Sbjct: 505 CKSKRMEEACDLFNSL 520


>gi|242086476|ref|XP_002443663.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
 gi|241944356|gb|EES17501.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
          Length = 853

 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 153/314 (48%), Gaps = 10/314 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q  +  D   Y+ +I ++G+  Q  +   L  EM  + C+P    YN +I    H  
Sbjct: 350 LKRQPGFKHDGHTYTTMIGILGQARQFGVLKKLLDEMSRAHCKPTVVTYNRII----HAY 405

Query: 61  DKAKALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
            +A  L +A+  F++M+  G E   P+ VTY  L+   A+A  +D    L+  + E  L+
Sbjct: 406 GRANYLKEAVKVFEEMQEAGYE---PDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLS 462

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD +TY+ +++  GK G +     +   M  N C P+++T+N++I    K + ++ + ++
Sbjct: 463 PDTFTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKL 522

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           +K +  +  +P   T++ ++   G      +AE VF +M    + P    Y  ++ ++G 
Sbjct: 523 YKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMR-RDWAPDEPVYGLLVDLWGK 581

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             NV +A   +  + + G    V T N++L A+       +A ++ +N    G+ P   T
Sbjct: 582 AGNVDKALGWYQAMLQDGLQPNVPTCNSLLSAFLKMNRFQDAYIVLQNMLAQGLVPSVQT 641

Query: 299 YKLLYKAYTKANMK 312
           Y LL    T+A  +
Sbjct: 642 YTLLLSCCTEAQAQ 655



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 126/268 (47%), Gaps = 6/268 (2%)

Query: 67  AKALGYFQKM-KGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           A+  G  +K+   M R  CKP +VTYN ++ A  +A  + +   +F+E+ E+   PD  T
Sbjct: 373 ARQFGVLKKLLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQEAGYEPDRVT 432

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++D + K G +     +  RM+     PD  T++ +++  GK        ++F  ++
Sbjct: 433 YCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMI 492

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
            +   P L T+N MI    KAR       +++ M    + P  ITY  ++ + G+C ++ 
Sbjct: 493 ENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLD 552

Query: 244 RAREIFDELSK-LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            A  +F E+ +    D  V  L  +++ +   G   +A   ++     G+ P+  T   L
Sbjct: 553 EAEAVFIEMRRDWAPDEPVYGL--LVDLWGKAGNVDKALGWYQAMLQDGLQPNVPTCNSL 610

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
             A+ K N  +    +L+ M   G+VP+
Sbjct: 611 LSAFLKMNRFQDAYIVLQNMLAQGLVPS 638



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 120/269 (44%), Gaps = 15/269 (5%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           ALG+FQ +K     K +  TY  ++    QAR    +  L  E+  +   P + TYN ++
Sbjct: 343 ALGFFQWLKRQPGFKHDGHTYTTMIGILGQARQFGVLKKLLDEMSRAHCKPTVVTYNRII 402

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            AYG+   +KE   V   M+    +PD +T+  LID + K    D    ++  +      
Sbjct: 403 HAYGRANYLKEAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLS 462

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   T+++M+   GK      A  +F +M     TP+ +TY  +I +       ++AR  
Sbjct: 463 PDTFTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQ------AKARN- 515

Query: 249 FDELSKLGKDMKVS-------TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           ++ + KL KDM+V+       T + ++E     G   EA+ +F         PD   Y L
Sbjct: 516 YENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRR-DWAPDEPVYGL 574

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           L   + KA   +      + M Q+G+ PN
Sbjct: 575 LVDLWGKAGNVDKALGWYQAMLQDGLQPN 603



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 84/179 (46%)

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           K D  T+  +I   G+ + F  ++++   +  +  KPT+ T+N +I  YG+A    +A  
Sbjct: 357 KHDGHTYTTMIGILGQARQFGVLKKLLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEAVK 416

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           VF++M    Y P  +TY  +I ++     +  A +++  + ++G      T +AM+    
Sbjct: 417 VFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSAMVNCLG 476

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             G    A  LF      G TP+  TY ++     KA   E V KL K M+  G  P+K
Sbjct: 477 KGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDK 535


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 145/320 (45%), Gaps = 8/320 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL-HTRDKAKALAKALGY 72
           Y+ L+    +  +  LA+  F ++  +G R D     A+I +HL     +AK   +AL  
Sbjct: 116 YAILMDCCTRAHRPELALAFFGQLLRTGLRVD-----AIIASHLLKGFCEAKRTDEALDI 170

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE--SILAPDIYTYNGVMDA 130
                    C P++ +YNILL++        Q + L + + E  ++ +PD+  YN V+D 
Sbjct: 171 LLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDG 230

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K G + +   +   M      PD++T++ ++ +  K +A DK E   + +++    P 
Sbjct: 231 FFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPD 290

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             T+N++I  Y       +A  VF++M      P  +    ++        +  AR++FD
Sbjct: 291 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFD 350

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            ++  G++  V +   ML  Y   G   +   LF+     G+ PD  T+ +L KAY    
Sbjct: 351 TMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCG 410

Query: 311 MKELVQKLLKRMEQNGIVPN 330
           M +    +   M  +G+ P+
Sbjct: 411 MLDKAMIIFNEMRDHGVKPH 430



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 148/358 (41%), Gaps = 44/358 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I    K+G    A  LF EM   G  PD   Y++++    H   KA+A+ KA
Sbjct: 220 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVV----HALCKARAMDKA 275

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
             + ++M  KG+    P+  TYN L+   +      +   +FKE+    + PD+   N +
Sbjct: 276 EAFLRQMVNKGV---LPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTL 332

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           M +  K G IKE   V   M      PD+ ++ ++++ Y  +     M  +F  ++    
Sbjct: 333 MGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGI 392

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT------------- 234
            P + TFN +I  Y    +  KA  +F +M      P  +TY  +I              
Sbjct: 393 APDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAME 452

Query: 235 --------------------MYGYCDNVS--RAREIFDELSKLGKDMKVSTLNAMLEAYC 272
                               + G+C + S  +A+E+  E+   G  + +    +++   C
Sbjct: 453 KFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLC 512

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             G   +A  +F+ + N+G+ PD+  Y +L   Y      E   ++   M   GI PN
Sbjct: 513 KLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 570



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 138/308 (44%), Gaps = 13/308 (4%)

Query: 41  GCRPDPSVYNALITAHLHTRDKAKA--LAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
           GC PD   YN L+ +  +     +A  L + +      +G   C P++V YN ++    +
Sbjct: 179 GCVPDVFSYNILLKSLCNQGKSGQADDLLRMMA-----EGGTVCSPDVVAYNTVIDGFFK 233

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
             +V++   LFKE+ +  + PD+ TY+ V+ A  K   + + E+ L +M +    PD  T
Sbjct: 234 EGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWT 293

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM---IINYGKARLQGKAEYVFQ 215
           +N LI  Y     + +  +VFK +      P +   N++   +  YGK +   +A  VF 
Sbjct: 294 YNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIK---EARDVFD 350

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            M      P   +Y  ++  Y     +    ++FD +   G    + T N +++AY   G
Sbjct: 351 TMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCG 410

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335
           +  +A ++F    + GV P   TY  +  A  +    +   +   +M   G+VP+K  + 
Sbjct: 411 MLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYH 470

Query: 336 EALETFSS 343
             ++ F +
Sbjct: 471 CLIQGFCT 478



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/329 (20%), Positives = 134/329 (40%), Gaps = 5/329 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +++  + D    + L+  + K G+ + A  +F  M   G  PD   Y  ++  +      
Sbjct: 318 RRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYA----T 373

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L      F  M G +   P+I T+N+L++A A    +D+   +F E+ +  + P + 
Sbjct: 374 KGCLVDMTDLFDLMLG-DGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVV 432

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  V+ A  + G + +     ++M      PD   ++ LI  +    +  K +++   +
Sbjct: 433 TYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEI 492

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           M++  +  +  F S+I N  K      A+ +F     +   P  + Y  ++  Y     +
Sbjct: 493 MNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKM 552

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +FD +   G +  V     ++  YC  G   E   LF      G+ P +  Y ++
Sbjct: 553 EKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNII 612

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNK 331
                +A      +     M ++GI  NK
Sbjct: 613 IDGLFEAGRTVPAKVKFHEMTESGIAMNK 641



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 136/324 (41%), Gaps = 11/324 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  +IA + + G+   AM  F++M + G  PD   Y+ LI          KA  K L   
Sbjct: 434 YMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKA--KELISE 491

Query: 74  QKMKGMERCKPNIVTY-NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
               GM   + +IV + +I+   C   R +D  N +F       L PD   YN +MD Y 
Sbjct: 492 IMNNGM---RLDIVFFGSIINNLCKLGRVMDAQN-IFDLTVNVGLHPDAVVYNMLMDGYC 547

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
             G +++   V   M S   +P+++ +  L++ Y K    D+   +F+ ++    KP+  
Sbjct: 548 LVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTI 607

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFD 250
            +N +I    +A     A+  F +MT      +  TY   I + G   N     A  +F 
Sbjct: 608 LYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYS--IVLRGLFKNRCFDEAIFLFK 665

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           EL  +   + + TLN M+          EA  LF +    G+ P + TY ++     K  
Sbjct: 666 ELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEG 725

Query: 311 MKELVQKLLKRMEQNGIVPNKRFF 334
           + E  + +   M+  G  P+ R  
Sbjct: 726 LVEEAEDMFSSMQNAGCEPDSRLL 749



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 135/332 (40%), Gaps = 40/332 (12%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF  M   G  PD   +N LI A+ +       L KA+  F +M+     KP++VTY  +
Sbjct: 383 LFDLMLGDGIAPDIYTFNVLIKAYAN----CGMLDKAMIIFNEMRD-HGVKPHVVTYMTV 437

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ- 151
           + A  +   +D     F ++ +  + PD Y Y+ ++  +  +G + + + ++S + +N  
Sbjct: 438 IAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGM 497

Query: 152 --------------CK--------------------PDIITFNLLIDSYGKRQAFDKMEQ 177
                         CK                    PD + +N+L+D Y      +K  +
Sbjct: 498 RLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALR 557

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           VF +++ +  +P +  + +++  Y K     +   +F++M      PS I Y  II    
Sbjct: 558 VFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLF 617

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
                  A+  F E+++ G  M   T + +L     N    EA  LF+    M V  D  
Sbjct: 618 EAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDII 677

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           T   +     +    E  + L   + ++G+VP
Sbjct: 678 TLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 709



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 115/266 (43%), Gaps = 19/266 (7%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   +  +I  + K G+   A  +F    N G  PD  VYN L+  +         + KA
Sbjct: 500 DIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLV----GKMEKA 555

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           L  F  M   G+E   PN+V Y  L+    +   +D+  +LF+E+ +  + P    YN +
Sbjct: 556 LRVFDAMVSAGIE---PNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNII 612

Query: 128 MDAYGKNGM-----IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +D   + G      +K  E   S +  N+C     T+++++    K + FD+   +FK L
Sbjct: 613 IDGLFEAGRTVPAKVKFHEMTESGIAMNKC-----TYSIVLRGLFKNRCFDEAIFLFKEL 667

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                K  + T N+MI    + R   +A+ +F  ++     P  +TY  +IT       V
Sbjct: 668 RAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLV 727

Query: 243 SRAREIFDELSKLGKDMKVSTLNAML 268
             A ++F  +   G +     LN ++
Sbjct: 728 EEAEDMFSSMQNAGCEPDSRLLNHVV 753



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 10/200 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  L+    K G+    + LF EM   G +P   +YN +I           A  K     
Sbjct: 574 YGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMT 633

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +    M +C     TY+I+LR   + R  D+   LFKEL    +  DI T N ++    +
Sbjct: 634 ESGIAMNKC-----TYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQ 688

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              ++E + + + +  +   P  +T++++I +  K    ++ E +F S+ ++  +P    
Sbjct: 689 TRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEP---- 744

Query: 194 FNSMIINYGKARLQGKAEYV 213
            +S ++N+    L  K E V
Sbjct: 745 -DSRLLNHVVRELLKKNEIV 763


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 146/326 (44%), Gaps = 19/326 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--LHTRDKAKALA 67
           D  IYS +I  + K G    A +LFSEM   G  P+   YN +I           A+ L 
Sbjct: 295 DVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLL 354

Query: 68  KALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           + +        +ER   P+++T+N L+ A  +   + +   L  E+    + PD  TYN 
Sbjct: 355 RDM--------IEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 406

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  + K+    + + +   M S    PD++TFN +ID Y + +  D+  Q+ + +    
Sbjct: 407 MIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRG 462

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
                 T+N++I  + +      A+ +FQ+M +    P  IT  C I +YG+C+N  +  
Sbjct: 463 LVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTIT--CNILLYGFCENEKLEE 520

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A E+F+ +     D+     N ++   C      EA  LF +    GV PD  TY ++  
Sbjct: 521 ALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMIS 580

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
            +   +       L  +M+ NG  P+
Sbjct: 581 GFCGKSAISDANVLFHKMKDNGHEPD 606



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 168/352 (47%), Gaps = 26/352 (7%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  ++  M K G T+ A+ L S+M  +  +PD  +Y+A+I      +D   + A+ 
Sbjct: 260 DVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRL--CKDGHHSDAQY 317

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNG 126
           L  F +M  KG+    PN+ TYN ++   C+  R  D    L +++ E  + PD+ T+N 
Sbjct: 318 L--FSEMLEKGI---APNVFTYNCMIDGFCSFGRWSD-AQRLLRDMIEREINPDVLTFNA 371

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++ A  K G + E E +   M      PD +T+N +I  + K   FD  + +F  LM S 
Sbjct: 372 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMF-DLMAS- 429

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSR 244
             P + TFN++I  Y +A+   +   + ++++      +  TY  +I  +G+C  DN++ 
Sbjct: 430 --PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLI--HGFCEVDNLNA 485

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A+++F E+   G      T N +L  +C N    EA  LFE      +  D+  Y ++  
Sbjct: 486 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIH 545

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTD 356
              K +  +    L   +  +G+ P+       ++T++  ++G    SA +D
Sbjct: 546 GMCKGSKVDEAWDLFCSLPIHGVEPD-------VQTYNVMISGFCGKSAISD 590



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 142/315 (45%), Gaps = 11/315 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI  +  +G+   A  L ++M   G   D   Y  ++       D   AL       
Sbjct: 229 FNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSAL----NLL 284

Query: 74  QKMKGMERCKPNIVTYN-ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            KM+     KP++V Y+ I+ R C    + D    LF E+ E  +AP+++TYN ++D + 
Sbjct: 285 SKMEET-HIKPDVVIYSAIIDRLCKDGHHSD-AQYLFSEMLEKGIAPNVFTYNCMIDGFC 342

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
             G   + + +L  M   +  PD++TFN LI +  K     + E++   ++H    P   
Sbjct: 343 SFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTV 402

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+NSMI  + K      A+++F  M +    P  +T+  II +Y     V    ++  E+
Sbjct: 403 TYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREI 458

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           S+ G     +T N ++  +C       A  LF+   + GV PD+ T  +L   + +    
Sbjct: 459 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 518

Query: 313 ELVQKLLKRMEQNGI 327
           E   +L + ++ + I
Sbjct: 519 EEALELFEVIQMSKI 533



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 131/321 (40%), Gaps = 52/321 (16%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL-HTR-DKAKALA 67
           D   ++ LI+   K+G+   A  L  EM +    PD   YN++I     H R D AK + 
Sbjct: 365 DVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMF 424

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
             +             P++VT+N ++    +A+ VD+   L +E+    L  +  TYN +
Sbjct: 425 DLMA-----------SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTL 473

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  + +   +   + +   M S+   PD IT N+L+  + + +  ++  ++F+ +  SK 
Sbjct: 474 IHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKI 533

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRA 245
                 +N                                     I ++G C    V  A
Sbjct: 534 DLDTVAYN-------------------------------------IIIHGMCKGSKVDEA 556

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            ++F  L   G +  V T N M+  +C     ++A++LF    + G  PD+STY  L + 
Sbjct: 557 WDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRG 616

Query: 306 YTKANMKELVQKLLKRMEQNG 326
             KA   +   +L+  M  NG
Sbjct: 617 CLKAGEIDKSIELISEMRSNG 637



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/331 (20%), Positives = 142/331 (42%), Gaps = 24/331 (7%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           +K+I V  +  +  +A+ L+ +M       +   +N LI            L+ +L  F 
Sbjct: 110 NKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFC----DCHKLSFSLSTFG 165

Query: 75  KMKGMERCKPNIVTYNILLRA-CAQARNVD--------------QVNALFKELHESILAP 119
           K+  +   +P++VT+N LL   C + R  +              +  ALF ++ E  L P
Sbjct: 166 KLTKLGF-QPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTP 224

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
            + T+N +++     G + E  +++++M       D++T+  +++   K         + 
Sbjct: 225 VVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLL 284

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             +  +  KP +  ++++I    K      A+Y+F +M      P+  TY C+I   G+C
Sbjct: 285 SKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMID--GFC 342

Query: 240 D--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
                S A+ +  ++ +   +  V T NA++ A    G   EA+ L +   +  + PD+ 
Sbjct: 343 SFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTV 402

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           TY  +   + K N  +  + +   M    +V
Sbjct: 403 TYNSMIYGFCKHNRFDDAKHMFDLMASPDVV 433



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 5/171 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R  +A+T  Y+ LI    +      A  LF EM + G  PD    N L+          
Sbjct: 460 RRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCEN---- 515

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           + L +AL  F+ ++ M +   + V YNI++    +   VD+   LF  L    + PD+ T
Sbjct: 516 EKLEEALELFEVIQ-MSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQT 574

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
           YN ++  +     I +   +  +MK N  +PD  T+N LI    K    DK
Sbjct: 575 YNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDK 625



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/265 (20%), Positives = 104/265 (39%), Gaps = 27/265 (10%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A+  ++KM+ + R   NI ++NIL++       +    + F +L +    PD+ T+N ++
Sbjct: 125 AISLYRKME-IRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLL 183

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
                                  C  D I+  L +  Y     F +   +F  ++     
Sbjct: 184 HGL--------------------CLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLT 223

Query: 189 PTLPTFNSMIINYGKARLQGK---AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
           P + TFN++I       L+G+   A  +  KM         +TY  I+       +   A
Sbjct: 224 PVVITFNTLI---NGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSA 280

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             +  ++ +      V   +A+++  C +G  ++A  LF      G+ P+  TY  +   
Sbjct: 281 LNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDG 340

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
           +         Q+LL+ M +  I P+
Sbjct: 341 FCSFGRWSDAQRLLRDMIEREINPD 365


>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 152/316 (48%), Gaps = 5/316 (1%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S +++   ++G  R A   F+E+++ G  P    YNAL    L    KA    +AL   +
Sbjct: 292 STVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNAL----LQVFGKAGVYTEALSVLK 347

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M+    C  + VTYN L+ A A+A    +   + + + +  + P+  TY  V+DAYGK 
Sbjct: 348 EMEE-NNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKA 406

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G   E   +   MK   C P+  T+N ++   GK+   ++M ++   +  +   P   T+
Sbjct: 407 GKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATW 466

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N+++   G   +      VF++M +  + P   T+  +I+ YG C +   A +++ E+++
Sbjct: 467 NTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTR 526

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
            G +  V+T NA+L A    G     + +  +  + G  P  ++Y L+ + Y K      
Sbjct: 527 AGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLG 586

Query: 315 VQKLLKRMEQNGIVPN 330
           ++++ + + +  I P+
Sbjct: 587 IERIEEGINEGQIFPS 602



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/404 (24%), Positives = 161/404 (39%), Gaps = 75/404 (18%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  Q+  + +   Y+ +I   GK G+   A+ LF  M+ +GC P+   YNA+++  L  +
Sbjct: 383 MMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSM-LGKK 441

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            ++  + K L     MK    C PN  T+N +L  C        VN +F+E+      PD
Sbjct: 442 SRSNEMIKMLC---DMKS-NGCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPD 497

Query: 121 IYTYNGVMDAYGKNG-------MIKEM----------------------------ESVLS 145
             T+N ++ AYG+ G       M  EM                            E+V+S
Sbjct: 498 RDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVIS 557

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKME---------QVFKSLMHSKE--------- 187
            MKS   KP   +++L++  Y K   +  +E         Q+F S M  +          
Sbjct: 558 DMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEEGINEGQIFPSWMLLRTLLLANFKCR 617

Query: 188 -----------------KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
                            KP +  FNSM+  + +  +  +AE + Q +      P  +TY 
Sbjct: 618 ALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYN 677

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
            ++ MY       +A EI   L K      + + N +++ +C  GL  EA  +       
Sbjct: 678 SLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMTER 737

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           G+ P   TY      YT   M   ++ +++ M +N   PN+  F
Sbjct: 738 GIRPCIFTYNTFVSGYTAMGMYGEIEDVIECMAKNDCRPNELTF 781



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 144/326 (44%), Gaps = 14/326 (4%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y+ D   Y+ ++    + G+   A+ LF  M+  G  P    YN ++          ++ 
Sbjct: 213 YMLDVRAYTTILHAYSRTGKYEKAINLFERMKEMGPSPTLVTYNVILDVF---GKMGRSW 269

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            K LG  ++M+  +  K +  T + +L ACA+   + +    F EL      P   TYN 
Sbjct: 270 RKILGVLEEMRS-KGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNA 328

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  +GK G+  E  SVL  M+ N C  D +T+N L+ +Y  R  F K   V   +M  K
Sbjct: 329 LLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYA-RAGFSKEAAVVIEMMTQK 387

Query: 187 E-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P   T+ ++I  YGKA  + +A  +F  M      P+  TY  +++M G     SR+
Sbjct: 388 GVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLG---KKSRS 444

Query: 246 REIFDELSKL---GKDMKVSTLNAMLEAYCMN-GLPTEADLLFENSHNMGVTPDSSTYKL 301
            E+   L  +   G     +T N +L A C N G+    + +F    + G  PD  T+  
Sbjct: 445 NEMIKMLCDMKSNGCFPNRATWNTIL-ALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNT 503

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGI 327
           L  AY +   +    K+   M + G 
Sbjct: 504 LISAYGRCGSEVDASKMYGEMTRAGF 529



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 143/326 (43%), Gaps = 6/326 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +   L+ ++G++ Q  +A  L  ++       D   Y    T  LH   +     KA
Sbjct: 181 DHHVIEILVRILGRESQYSVAAKLLDKIPLQDYMLDVRAY----TTILHAYSRTGKYEKA 236

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHESILAPDIYTYNGVM 128
           +  F++MK M    P +VTYN++L    +  R+  ++  + +E+    L  D +T + V+
Sbjct: 237 INLFERMKEMGP-SPTLVTYNVILDVFGKMGRSWRKILGVLEEMRSKGLKFDEFTCSTVL 295

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            A  + G+++E +   + +KS   +P  +T+N L+  +GK   + +   V K +  +   
Sbjct: 296 SACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENNCP 355

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
               T+N ++  Y +A    +A  V + MT     P+ ITY  +I  YG       A ++
Sbjct: 356 ADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKL 415

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F  + + G      T NA+L          E   +  +  + G  P+ +T+  +      
Sbjct: 416 FYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILALCGN 475

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
             M + V ++ + M+  G  P++  F
Sbjct: 476 KGMDKFVNRVFREMKSCGFEPDRDTF 501



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 124/276 (44%), Gaps = 41/276 (14%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH----------------- 56
           Y+ L+  + +KG  R    + S+M++ G +P  + Y+ ++  +                 
Sbjct: 536 YNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEEGIN 595

Query: 57  --------------LHTRDKAKALA---KALGYFQKMKGMERCKPNIVTYNILLRACAQA 99
                         L    K +ALA   +A   F+K       KP++V +N +L    + 
Sbjct: 596 EGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKK----HGYKPDMVIFNSMLSIFTRN 651

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
              DQ   + + +HE  L PD+ TYN +MD Y + G   + E +L  ++ +Q KPD++++
Sbjct: 652 NMYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSY 711

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
           N +I  + ++    +  ++   +     +P + T+N+ +  Y    + G+ E V + M  
Sbjct: 712 NTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMYGEIEDVIECMAK 771

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
               P+ +T++ ++   GYC    +  E  D +SK+
Sbjct: 772 NDCRPNELTFKMVVD--GYC-RAGKYSEAMDFVSKI 804



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 137/333 (41%), Gaps = 44/333 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ ++A+ G KG  +    +F EM++ G  PD   +N LI+A+     +  A +K  G  
Sbjct: 466 WNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDA-SKMYGEM 524

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +  G   C   + TYN LL A A+  +      +  ++      P   +Y+ ++  Y K
Sbjct: 525 TR-AGFNAC---VTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAK 580

Query: 134 NG------MIKE-----------------------------MESVLSRMKSNQCKPDIIT 158
            G       I+E                              E   +  K +  KPD++ 
Sbjct: 581 GGNYLGIERIEEGINEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVI 640

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           FN ++  + +   +D+ E + +S+      P L T+NS++  Y +     KAE + + + 
Sbjct: 641 FNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLE 700

Query: 219 AMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
             +  P  ++Y  +I   G+C    +  A  +  E+++ G    + T N  +  Y   G+
Sbjct: 701 KSQLKPDLVSYNTVIK--GFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGM 758

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             E + + E        P+  T+K++   Y +A
Sbjct: 759 YGEIEDVIECMAKNDCRPNELTFKMVVDGYCRA 791


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 156/363 (42%), Gaps = 41/363 (11%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           +AD  +Y+ LI   GK+G    AM +F++M+  G  PD   Y  +I A      +   LA
Sbjct: 399 VADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAF----SRMGRLA 454

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL-HESILAPDIYTYNG 126
            A+  F +M  M   KP+ + YN L++      N+ +   L  E+    I  P+   +N 
Sbjct: 455 DAMDKFNQMIAMG-LKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNS 513

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++++  K G + E + +   +     +PD+ITFN LID YG     +K   V  +++   
Sbjct: 514 IINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVG 573

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY----------------- 229
            +P + T+++++  Y +         +F++M +    P+ ITY                 
Sbjct: 574 IEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAK 633

Query: 230 ----------------ECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
                            C I + G C N     A  +F +L  +     ++ +N M++A 
Sbjct: 634 KMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAM 693

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
                  EA+ LF++    G+ P++STY ++     K    E    +   ME++G  P+ 
Sbjct: 694 YKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSS 753

Query: 332 RFF 334
           R  
Sbjct: 754 RLL 756



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 146/355 (41%), Gaps = 45/355 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I    ++G+   A  LF EM   G  PD   Y++ I A      KA+A+ KA    
Sbjct: 230 YNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALC----KARAMDKAELVL 285

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           ++M   G E   P+ VTYN ++   +      +   +F+E+    L PDI+T N  M + 
Sbjct: 286 RQMISNGFE---PDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSL 342

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITF-------------------------------- 159
            K+G  KE       M +   KPD++T+                                
Sbjct: 343 CKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADH 402

Query: 160 ---NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
              N+LID+YGKR   D+   +F  +      P   T+ ++I  + +      A   F +
Sbjct: 403 SVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQ 462

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST-LNAMLEAYCMNG 275
           M AM   P  I Y  +I  +    N+ +A+E+  E+   G     +   N+++ + C  G
Sbjct: 463 MIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEG 522

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              EA  +F+   ++G  PD  T+  L   Y      E    +L  M   GI P+
Sbjct: 523 RVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPD 577



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 133/309 (43%), Gaps = 3/309 (0%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           L   M   G  PD   Y+ ++ +        +AL       +K  G   C PN+V+YN +
Sbjct: 177 LLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGG---CSPNVVSYNTV 233

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +   V +   LF E+ +  + PD+ TY+  +DA  K   + + E VL +M SN  
Sbjct: 234 IHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGF 293

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           +PD +T+N +I  Y     + +   +F+ +      P + T NS + +  K     +A  
Sbjct: 294 EPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAE 353

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
            F  M A  + P  +TY  ++  Y     V     +F+ +   G     S  N +++AY 
Sbjct: 354 FFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYG 413

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             G+  EA L+F      GV PD+ TY  +  A+++            +M   G+ P+  
Sbjct: 414 KRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTI 473

Query: 333 FFLEALETF 341
            +   ++ F
Sbjct: 474 VYNSLIQGF 482



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 153/344 (44%), Gaps = 10/344 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R  +     Y+ L+    +  +  +   LF     +G + D  V N L+    H +  
Sbjct: 111 RPRVALPTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRS 170

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESI-LAPD 120
             A+   L    ++ G+E   P+ ++Y+ +L++ C  +R+   ++ L   + +S   +P+
Sbjct: 171 DDAVNVLLHRMPEL-GVE---PDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPN 226

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + +YN V+  + + G + +  ++   M      PD++T++  ID+  K +A DK E V +
Sbjct: 227 VVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLR 286

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++ +  +P   T+N MI  Y       +   +F++MT     P   T  C   M   C 
Sbjct: 287 QMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFT--CNSYMSSLCK 344

Query: 241 N--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
           +     A E FD ++  G    + T + +L  Y   G   +   LF +    G+  D S 
Sbjct: 345 HGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSV 404

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           Y +L  AY K  M +    +  +M++ G++P+   +   +  FS
Sbjct: 405 YNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFS 448



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 149/360 (41%), Gaps = 47/360 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS L+     +G     + LF+ M  +G   D SVYN LI A+     K   + +A
Sbjct: 366 DLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAY----GKRGMMDEA 421

Query: 70  LGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           +  F +M+  ER   P+  TY  ++ A ++   +      F ++    L PD   YN ++
Sbjct: 422 MLIFTQMQ--ERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLI 479

Query: 129 DAYGKNGMIKEMESVLSRMKSNQC-KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
             +  +G + + + ++S M S    +P+ + FN +I+S  K     + + +F  ++H  E
Sbjct: 480 QGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGE 539

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN------ 241
           +P + TFNS+I  YG      KA  V   M ++   P  +TY  ++   GYC N      
Sbjct: 540 RPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLD--GYCRNGRIDDG 597

Query: 242 -------------------------------VSRAREIFDELSKLGKDMKVSTLNAMLEA 270
                                             A+++  E+ + G  M +ST   +L  
Sbjct: 598 LILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGG 657

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            C N    EA  LF+    M V  + +    +  A  K   +E   +L   +   G+VPN
Sbjct: 658 LCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPN 717



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 131/312 (41%), Gaps = 10/312 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           +T  ++ +I  + K+G+   A  +F  + + G RPD   +N+LI  +         + KA
Sbjct: 507 NTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGY----GLVGKMEKA 562

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            G    M   G+E   P++VTY+ LL    +   +D    LF+E+    + P   TY  +
Sbjct: 563 FGVLDAMISVGIE---PDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGII 619

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +     +G     + +   M  +    DI T  +++    +    D+   +FK L     
Sbjct: 620 LHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNV 679

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           K  +   N+MI    K R + +A  +F  ++A    P+  TY  +IT      +V  A  
Sbjct: 680 KFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADN 739

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F  + K G       LN ++      G  ++A           ++ ++ST  L+   ++
Sbjct: 740 MFSLMEKSGCAPSSRLLNNIIRVLLEKGEISKAGNYLSKVDGKTISLEASTASLMLSLFS 799

Query: 308 -KANMKELVQKL 318
            K   +E ++ L
Sbjct: 800 RKGKYREQIKSL 811


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 154/342 (45%), Gaps = 11/342 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR    D   Y+ LI    +      AM L  EMR+ GC PD   YN L+        K 
Sbjct: 232 QRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGIC----KE 287

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIY 122
             L +A+ +   M     C+PN++T+NI+LR+ C+  R +D    L  ++     +P + 
Sbjct: 288 GRLDEAIKFLNDMPS-SGCQPNVITHNIILRSMCSTGRWMD-AEKLLADMLRKGFSPSVV 345

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           T+N +++   + G++     +L +M  + C+P+ +++N L+  + K +  D+  +  + +
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           +     P + T+N+M+    K      A  +  ++++   +P  ITY  +I         
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKT 465

Query: 243 SRAREIFDELSKLGKDMKVSTL--NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            +A ++ DE+    KD+K  T+  ++++      G   EA   F     MG+ P++ T+ 
Sbjct: 466 GKAIKLLDEMR--AKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFN 523

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            +     K+   +     L  M   G  PN+  +   +E  +
Sbjct: 524 SIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLA 565



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 157/352 (44%), Gaps = 22/352 (6%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ +I+   K G+   A+ +   M  S   PD   YN ++ +     D  K L 
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVLDRMSVS---PDVVTYNTILRSLC---DSGK-LK 221

Query: 68  KALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +A+    +M  ++R C P+++TY IL+ A  +   V     L  E+ +    PD+ TYN 
Sbjct: 222 QAMEVLDRM--LQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNV 279

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++   K G + E    L+ M S+ C+P++IT N+++ S      +   E++   ++   
Sbjct: 280 LVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG 339

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
             P++ TFN +I    +  L G+A  + +KM      P+ ++Y  +  ++G+C    + R
Sbjct: 340 FSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPL--LHGFCKEKKMDR 397

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A E  + +   G    + T N ML A C +G   +A  +     + G +P   TY  +  
Sbjct: 398 AIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVID 457

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTD 356
              KA       KLL  M    + P+   +        SSL G  S   K D
Sbjct: 458 GLAKAGKTGKAIKLLDEMRAKDLKPDTITY--------SSLVGGLSREGKVD 501



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 139/325 (42%), Gaps = 5/325 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++  +   G+ + AM +   M    C PD   Y  LI A    RD    +  A
Sbjct: 203 DVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEAT--CRDSG--VGHA 258

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +    +M+    C P++VTYN+L+    +   +D+      ++  S   P++ T+N ++ 
Sbjct: 259 MKLLDEMRD-RGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILR 317

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           +    G   + E +L+ M      P ++TFN+LI+   ++    +   + + +     +P
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP 377

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              ++N ++  + K +   +A    ++M +    P  +TY  ++T       V  A EI 
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           ++LS  G    + T N +++     G   +A  L +      + PD+ TY  L    ++ 
Sbjct: 438 NQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSRE 497

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
              +   K     E+ GI PN   F
Sbjct: 498 GKVDEAIKFFHEFERMGIRPNAVTF 522



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 143/329 (43%), Gaps = 11/329 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT--- 59
           + R    D   Y+ L+  + K+G+   A+   ++M +SGC+P+   +N ++ +   T   
Sbjct: 266 RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRW 325

Query: 60  RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
            D  K LA  L      KG     P++VT+NIL+    +   + +   + +++ +    P
Sbjct: 326 MDAEKLLADML-----RKGF---SPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP 377

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           +  +YN ++  + K   +      L RM S  C PDI+T+N ++ +  K    +   ++ 
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             L      P L T+N++I    KA   GKA  +  +M A    P  ITY  ++      
Sbjct: 438 NQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSRE 497

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             V  A + F E  ++G      T N+++   C +     A        N G  P+ ++Y
Sbjct: 498 GKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSY 557

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIV 328
            +L +      M +   +LL  +   G++
Sbjct: 558 TILIEGLAYEGMAKEALELLNELCNKGLM 586



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 7/260 (2%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+I+    L+R   +     +   + + L  S   PD+ TYN ++  Y K G I    SV
Sbjct: 135 PDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSV 194

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L RM  +   PD++T+N ++ S        +  +V   ++     P + T+  +I    +
Sbjct: 195 LDRMSVS---PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCR 251

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKV 261
               G A  +  +M     TP  +TY  ++   G C    +  A +  +++   G    V
Sbjct: 252 DSGVGHAMKLLDEMRDRGCTPDVVTYNVLVN--GICKEGRLDEAIKFLNDMPSSGCQPNV 309

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T N +L + C  G   +A+ L  +    G +P   T+ +L     +  +      +L++
Sbjct: 310 ITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEK 369

Query: 322 MEQNGIVPNKRFFLEALETF 341
           M Q+G  PN   +   L  F
Sbjct: 370 MPQHGCQPNSLSYNPLLHGF 389


>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
 gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
          Length = 431

 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 139/317 (43%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  +I  + K G   LAM    +M  +G  PD  +YN +    L    KA  + +A   F
Sbjct: 52  YKCVIQSLVKAGNVVLAMDFLDKMIKTGLEPDTLLYNVV----LDGLGKANMIDEACKLF 107

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             MK M  C  +  TY IL+R+  + +  ++   LF E+ E    P    Y  V+D Y K
Sbjct: 108 ASMKSMG-CPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCK 166

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G I+    VL +M      PD  T N LI +  +    +   ++F+ +  S       +
Sbjct: 167 AGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVS 226

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           FN+M+   GKA   G A     +M A    P+ IT+  +I   G     S A ++  E+ 
Sbjct: 227 FNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMR 286

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V T   M+EA+   G   +A  +F +    G + +  TY LL  A  KA   +
Sbjct: 287 SAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQ 346

Query: 314 LVQKLLKRMEQNGIVPN 330
             + +   M++ GI+P+
Sbjct: 347 DARDIYFDMKKKGILPD 363



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 138/294 (46%), Gaps = 7/294 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT +Y+ ++  +GK      A  LF+ M++ GC  D   Y  LI     +  + K   +A
Sbjct: 83  DTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILI----RSLGRCKRDEEA 138

Query: 70  LGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
              F +M+  ER C P+   Y  ++    +A  ++    + K++ +  LAPD YT N ++
Sbjct: 139 TLLFDEME--ERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLI 196

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            A  + G  +    +  RMK +    + ++FN ++D  GK        Q    +     K
Sbjct: 197 TAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIK 256

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   TFN++I   G+A+   +A  V Q+M +   TP   TY C+I  +    N+ +A E+
Sbjct: 257 PNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEM 316

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           F ++ K G    V T N +++A    G   +A  ++ +    G+ PD+ T  +L
Sbjct: 317 FGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDIYFDMKKKGILPDAITATVL 370



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 138/312 (44%), Gaps = 5/312 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           + + ++++ CR    V NA+I A+     ++  + K +  FQ++      KPN  TY  +
Sbjct: 1   MLAAIQDTPCRYHVLVSNAVIAAY----GRSSRIHKVMDEFQELDK-HGSKPNAYTYKCV 55

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +++  +A NV        ++ ++ L PD   YN V+D  GK  MI E   + + MKS  C
Sbjct: 56  IQSLVKAGNVVLAMDFLDKMIKTGLEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMGC 115

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
             D  T+ +LI S G+ +  ++   +F  +      P+ P + ++I  Y KA     A  
Sbjct: 116 PADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMV 175

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           V +KM      P   T   +IT          A EIF+ + K G  +   + NAML+   
Sbjct: 176 VLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCG 235

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             G    A    +     G+ P+S T+  L     +A       K+L+ M   G+ P+  
Sbjct: 236 KAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVF 295

Query: 333 FFLEALETFSSS 344
            +   +E F+ +
Sbjct: 296 TYTCMIEAFAKA 307


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 146/326 (44%), Gaps = 19/326 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--LHTRDKAKALA 67
           D  IYS +I  + K G    A +LFSEM   G  P+   YN +I           A+ L 
Sbjct: 295 DVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLL 354

Query: 68  KALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           + +        +ER   P+++T+N L+ A  +   + +   L  E+    + PD  TYN 
Sbjct: 355 RDM--------IEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 406

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  + K+    + + +   M S    PD++TFN +ID Y + +  D+  Q+ + +    
Sbjct: 407 MIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRG 462

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
                 T+N++I  + +      A+ +FQ+M +    P  IT  C I +YG+C+N  +  
Sbjct: 463 LVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTIT--CNILLYGFCENEKLEE 520

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A E+F+ +     D+     N ++   C      EA  LF +    GV PD  TY ++  
Sbjct: 521 ALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMIS 580

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
            +   +       L  +M+ NG  P+
Sbjct: 581 GFCGKSAISDANVLFHKMKDNGHEPD 606



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 168/352 (47%), Gaps = 26/352 (7%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  ++  M K G T+ A+ L S+M  +  +PD  +Y+A+I      +D   + A+ 
Sbjct: 260 DVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRL--CKDGHHSDAQY 317

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNG 126
           L  F +M  KG+    PN+ TYN ++   C+  R  D    L +++ E  + PD+ T+N 
Sbjct: 318 L--FSEMLEKGI---APNVFTYNCMIDGFCSFGRWSD-AQRLLRDMIEREINPDVLTFNA 371

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++ A  K G + E E +   M      PD +T+N +I  + K   FD  + +F  LM S 
Sbjct: 372 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMF-DLMAS- 429

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSR 244
             P + TFN++I  Y +A+   +   + ++++      +  TY  +I  +G+C  DN++ 
Sbjct: 430 --PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLI--HGFCEVDNLNA 485

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A+++F E+   G      T N +L  +C N    EA  LFE      +  D+  Y ++  
Sbjct: 486 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIH 545

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTD 356
              K +  +    L   +  +G+ P+       ++T++  ++G    SA +D
Sbjct: 546 GMCKGSKVDEAWDLFCSLPIHGVEPD-------VQTYNVMISGFCGKSAISD 590



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 142/315 (45%), Gaps = 11/315 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI  +  +G+   A  L ++M   G   D   Y  ++       D   AL       
Sbjct: 229 FNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSAL----NLL 284

Query: 74  QKMKGMERCKPNIVTYN-ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            KM+     KP++V Y+ I+ R C    + D    LF E+ E  +AP+++TYN ++D + 
Sbjct: 285 SKMEET-HIKPDVVIYSAIIDRLCKDGHHSD-AQYLFSEMLEKGIAPNVFTYNCMIDGFC 342

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
             G   + + +L  M   +  PD++TFN LI +  K     + E++   ++H    P   
Sbjct: 343 SFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTV 402

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+NSMI  + K      A+++F  M     +P  +T+  II +Y     V    ++  E+
Sbjct: 403 TYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREI 458

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           S+ G     +T N ++  +C       A  LF+   + GV PD+ T  +L   + +    
Sbjct: 459 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 518

Query: 313 ELVQKLLKRMEQNGI 327
           E   +L + ++ + I
Sbjct: 519 EEALELFEVIQMSKI 533



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 133/327 (40%), Gaps = 52/327 (15%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL-HTR-D 61
           +R    D   ++ LI+   K+G+   A  L  EM +    PD   YN++I     H R D
Sbjct: 359 EREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFD 418

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            AK +   +             P++VT+N ++    +A+ VD+   L +E+    L  + 
Sbjct: 419 DAKHMFDLMA-----------SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANT 467

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TYN ++  + +   +   + +   M S+   PD IT N+L+  + + +  ++  ++F+ 
Sbjct: 468 TTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEV 527

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC-- 239
           +  SK       +N                                     I ++G C  
Sbjct: 528 IQMSKIDLDTVAYN-------------------------------------IIIHGMCKG 550

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             V  A ++F  L   G +  V T N M+  +C     ++A++LF    + G  PD+STY
Sbjct: 551 SKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTY 610

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNG 326
             L +   KA   +   +L+  M  NG
Sbjct: 611 NTLIRGCLKAGEIDKSIELISEMRSNG 637



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/331 (20%), Positives = 142/331 (42%), Gaps = 24/331 (7%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           +K+I V  +  +  +A+ L+ +M       +   +N LI            L+ +L  F 
Sbjct: 110 NKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFC----DCHKLSFSLSTFG 165

Query: 75  KMKGMERCKPNIVTYNILLRA-CAQARNVD--------------QVNALFKELHESILAP 119
           K+  +   +P++VT+N LL   C + R  +              +  ALF ++ E  L P
Sbjct: 166 KLTKLGF-QPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTP 224

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
            + T+N +++     G + E  +++++M       D++T+  +++   K         + 
Sbjct: 225 VVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLL 284

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             +  +  KP +  ++++I    K      A+Y+F +M      P+  TY C+I   G+C
Sbjct: 285 SKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMID--GFC 342

Query: 240 D--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
                S A+ +  ++ +   +  V T NA++ A    G   EA+ L +   +  + PD+ 
Sbjct: 343 SFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTV 402

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           TY  +   + K N  +  + +   M    +V
Sbjct: 403 TYNSMIYGFCKHNRFDDAKHMFDLMASPDVV 433



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/265 (20%), Positives = 104/265 (39%), Gaps = 27/265 (10%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A+  ++KM+ + R   NI ++NIL++       +    + F +L +    PD+ T+N ++
Sbjct: 125 AISLYRKME-IRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLL 183

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
                                  C  D I+  L +  Y     F +   +F  ++     
Sbjct: 184 HGL--------------------CLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLT 223

Query: 189 PTLPTFNSMIINYGKARLQGK---AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
           P + TFN++I       L+G+   A  +  KM         +TY  I+       +   A
Sbjct: 224 PVVITFNTLI---NGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSA 280

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             +  ++ +      V   +A+++  C +G  ++A  LF      G+ P+  TY  +   
Sbjct: 281 LNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDG 340

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
           +         Q+LL+ M +  I P+
Sbjct: 341 FCSFGRWSDAQRLLRDMIEREINPD 365



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  Y+ +I  M K  +   A  LF  +   G  PD   YN +I+          A++ A
Sbjct: 536 DTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFC----GKSAISDA 591

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F KMK     +P+  TYN L+R C +A  +D+   L  E+  +  + D +T   V D
Sbjct: 592 NVLFHKMKDNGH-EPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD 650

Query: 130 AYGKNGMIKEMESVLS 145
                 + K    +LS
Sbjct: 651 LITDGRLDKSFSDMLS 666


>gi|326490553|dbj|BAJ84940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 856

 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 147/334 (44%), Gaps = 44/334 (13%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D   Y  LI +  K G   +AM L+  M+  G  PD   Y+A++        K   L
Sbjct: 429 YQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNC----LGKGGQL 484

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A A   F +M     C PN+VTYNI++   A+ARN D V  L++++  +   PD  TY+ 
Sbjct: 485 AAAYKLFCEMID-NGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSI 543

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           VM+  G  G + E E+V   M+ +   PD   + LL+D +GK    DK    + +++   
Sbjct: 544 VMEVLGHCGHLDEAEAVFLEMRRDWA-PDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDG 602

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT-------MYGYC 239
            +P +PT NS++  + K      A  V Q M A    PS  TY  +++         G C
Sbjct: 603 LQPNVPTCNSLLSAFLKLNRFQDAYGVLQNMLAQGLVPSLQTYTLLLSCCTDAHAQMGLC 662

Query: 240 -------------------------DNV-SRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
                                    +NV   AR   D +    ++ K   ++A+++    
Sbjct: 663 CQLMAITGHPAHMFLLYLPDAEPGGENVRDHARYFLDMMHSEDRESKRGIMDAVIDFLHK 722

Query: 274 NGLPTEADLLFENSHNMGVTPD-----SSTYKLL 302
           +GL  EA  ++E +    V PD     SS+Y L+
Sbjct: 723 SGLKEEAGFIWEVAAQRNVYPDSVREKSSSYWLI 756



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 151/312 (48%), Gaps = 6/312 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q  +  D   Y+ +I ++G+  Q      L  EM +  C+P    YN +I    H  
Sbjct: 353 LKRQPGFKHDGHTYTTMIGILGQAKQFGTMRKLLDEMSSVNCKPTVVTYNRII----HAY 408

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +A  L +A+  F++M+G    +P+ VTY  L+   A++  ++    L+  + E  L+PD
Sbjct: 409 GRANYLREAVKVFEEMEGAGY-QPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPD 467

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            +TY+ +++  GK G +     +   M  N C P+++T+N++I    K + +D + ++++
Sbjct: 468 TFTYSAMVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYR 527

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +  +  +P   T++ ++   G      +AE VF +M    + P    Y  ++ ++G   
Sbjct: 528 DMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEMR-RDWAPDEPVYGLLVDLWGKAG 586

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           NV +A   +  + + G    V T N++L A+       +A  + +N    G+ P   TY 
Sbjct: 587 NVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKLNRFQDAYGVLQNMLAQGLVPSLQTYT 646

Query: 301 LLYKAYTKANMK 312
           LL    T A+ +
Sbjct: 647 LLLSCCTDAHAQ 658



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 118/250 (47%), Gaps = 3/250 (1%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           CKP +VTYN ++ A  +A  + +   +F+E+  +   PD  TY  ++D + K+G ++   
Sbjct: 394 CKPTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAM 453

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
            +  RM+     PD  T++ +++  GK        ++F  ++ +   P L T+N +I   
Sbjct: 454 DLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQ 513

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK-LGKDMK 260
            KAR       +++ M    + P  ITY  ++ + G+C ++  A  +F E+ +    D  
Sbjct: 514 AKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEMRRDWAPDEP 573

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           V  L  +++ +   G   +A   +      G+ P+  T   L  A+ K N  +    +L+
Sbjct: 574 VYGL--LVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKLNRFQDAYGVLQ 631

Query: 321 RMEQNGIVPN 330
            M   G+VP+
Sbjct: 632 NMLAQGLVPS 641



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 117/269 (43%), Gaps = 15/269 (5%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           ALG+F  +K     K +  TY  ++    QA+    +  L  E+      P + TYN ++
Sbjct: 346 ALGFFHWLKRQPGFKHDGHTYTTMIGILGQAKQFGTMRKLLDEMSSVNCKPTVVTYNRII 405

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            AYG+   ++E   V   M+    +PD +T+  LID + K    +    ++  +      
Sbjct: 406 HAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLS 465

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   T+++M+   GK      A  +F +M     TP+ +TY  II +       ++AR  
Sbjct: 466 PDTFTYSAMVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQ------AKARN- 518

Query: 249 FDELSKLGKDMKVS-------TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +D + KL +DM+++       T + ++E     G   EA+ +F         PD   Y L
Sbjct: 519 YDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEMRR-DWAPDEPVYGL 577

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           L   + KA   +        M Q+G+ PN
Sbjct: 578 LVDLWGKAGNVDKALGWYHAMLQDGLQPN 606



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 86/190 (45%)

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           K D  T+  +I   G+ + F  M ++   +     KPT+ T+N +I  YG+A    +A  
Sbjct: 360 KHDGHTYTTMIGILGQAKQFGTMRKLLDEMSSVNCKPTVVTYNRIIHAYGRANYLREAVK 419

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           VF++M    Y P  +TY  +I ++     +  A +++  + ++G      T +AM+    
Sbjct: 420 VFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLG 479

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             G    A  LF    + G TP+  TY ++     KA   + V KL + M+  G  P+K 
Sbjct: 480 KGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKI 539

Query: 333 FFLEALETFS 342
            +   +E   
Sbjct: 540 TYSIVMEVLG 549


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 162/346 (46%), Gaps = 13/346 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR-- 60
           ++R    +T  Y+ LIA + + G    A     +M + G  PD   Y ALI     +R  
Sbjct: 144 RERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRS 203

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           ++AKAL        +M   E  KPN+V Y  L+    +  N D+   + KE+  + + P+
Sbjct: 204 NEAKAL------LDEMSCAE-LKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPN 256

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TY+ ++    K G +     +L +M  +  +PD IT+NL+I+ + +        ++  
Sbjct: 257 KITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLS 316

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC- 239
            + ++   P + T++ MI    ++    KA  + ++MT     P+   Y  +I+  GYC 
Sbjct: 317 EMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLIS--GYCR 374

Query: 240 -DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             NVS A EIFD+++K+     +   N+++      G   E+   F      G+ P+  T
Sbjct: 375 EGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFT 434

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           Y  L   Y K    E  ++L++RM   G+ PN   +++ LE++  S
Sbjct: 435 YSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKS 480



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 151/336 (44%), Gaps = 16/336 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I  + + G+   A  L  EM   G +P+  VY  LI+ +   R+   +LA  +  F
Sbjct: 330 YSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGY--CREGNVSLACEI--F 385

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM  +    P++  YN L+   ++   V++    F ++ E  L P+ +TY+G++  Y K
Sbjct: 386 DKMTKV-NVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLK 444

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           NG ++  E ++ RM     KP+ + +  L++SY K    +K+   FKS++          
Sbjct: 445 NGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRI 504

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVSRARE--I 248
           +  +I N   +   G  E  F+ ++ ++     P    Y  +I+  G C    R +   I
Sbjct: 505 YGILIHNLSSS---GNMEAAFRVLSEIEKNGSVPDVHVYSSLIS--GLCKTADREKAFGI 559

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            DE+SK G D  +   NA+++  C +G  + A  +F +    G+ P+  TY  L     K
Sbjct: 560 LDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCK 619

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
                    L   M   GI P+  F    L T  SS
Sbjct: 620 VGDISNAFYLYNEMLATGITPDA-FVYSVLTTGCSS 654



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 140/304 (46%), Gaps = 12/304 (3%)

Query: 31  MWLFSE-MRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALGYFQKMKGMER-CKPNI 86
           +W   E M  +G  PD   Y+ LI A+   R  D AK +        +M+  ER C  N 
Sbjct: 101 LWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKV------LVEMR--ERGCGLNT 152

Query: 87  VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 146
           VTYN+L+    ++  V++     K++ +  L PD +TY  +++   K+    E +++L  
Sbjct: 153 VTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDE 212

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           M   + KP+++ +  LID + +    D+  ++ K ++ +  +P   T+++++    K   
Sbjct: 213 MSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQ 272

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
             +A  + ++M    + P  ITY  II  +    N   A  +  E+   G    V T + 
Sbjct: 273 MDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSI 332

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           M+   C +G P +A  L E     G+ P++  Y  L   Y +     L  ++  +M +  
Sbjct: 333 MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVN 392

Query: 327 IVPN 330
           ++P+
Sbjct: 393 VLPD 396



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 142/342 (41%), Gaps = 38/342 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  IY  LI  +   G    A  + SE+  +G  PD  VY++LI+    T D+     KA
Sbjct: 501 DNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADR----EKA 556

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            G   +M  KG++   PNIV YN L+    ++ ++     +F  +    L P+  TY  +
Sbjct: 557 FGILDEMSKKGVD---PNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSL 613

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK-SLMHSK 186
           +D   K G I     + + M +    PD   +++L  + G   A D  + +F    M  +
Sbjct: 614 IDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVL--TTGCSSAGDLEQAMFLIEEMFLR 671

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
              ++ +FN+++  + K     +   +   +      P+ +T E II+       +S   
Sbjct: 672 GHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVH 731

Query: 247 EIFDEL------------SKLGKDM------KVSTLNAMLEAYCMNGLPTEA----DLLF 284
            IF EL            S L  DM       +  ++ M+  +C  G   +A    D++ 
Sbjct: 732 TIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIV 791

Query: 285 ENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
             S  MG    SS   ++     K  + E +  LLK M++ G
Sbjct: 792 AKSAPMGC---SSYLAIVDNLCRKGKLSEALN-LLKEMDKRG 829



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 72/184 (39%)

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
             ++L+D+Y K        +V   +      P++   N+++ +  +A        V + M
Sbjct: 49  VLDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFM 108

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
                +P   TY  +I  Y        A+++  E+ + G  +   T N ++   C +G  
Sbjct: 109 VGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAV 168

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEA 337
            EA    ++  + G+ PD  TY  L     K+      + LL  M    + PN   +   
Sbjct: 169 EEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANL 228

Query: 338 LETF 341
           ++ F
Sbjct: 229 IDGF 232



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 117/310 (37%), Gaps = 80/310 (25%)

Query: 127 VMDAYGKNGMIKEMESVLSRMK------SNQC---------------------------- 152
           ++D Y K+G +++   V+  M+      S +C                            
Sbjct: 53  LVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAG 112

Query: 153 -KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII------------ 199
             PD+ T++ LI++Y K + FD  ++V   +          T+N +I             
Sbjct: 113 ISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAF 172

Query: 200 -------NYG----------------KARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
                  +YG                K+R   +A+ +  +M+  +  P+ + Y  +I  +
Sbjct: 173 GFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGF 232

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
               N   A ++  E+   G      T + ++   C  G    A LL +        PD+
Sbjct: 233 MREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDT 292

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG-SQSGSAK- 354
            TY L+ + + + + K+   +LL  ME  GI PN       + T+S  + G  QSG  + 
Sbjct: 293 ITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPN-------VYTYSIMIHGLCQSGEPEK 345

Query: 355 -TDLTRSLST 363
            +DL   ++T
Sbjct: 346 ASDLLEEMTT 355


>gi|168000535|ref|XP_001752971.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695670|gb|EDQ82012.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 391

 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 164/355 (46%), Gaps = 23/355 (6%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+K+I+  G+  Q +LA  LF EM   G +     +NALI    H+  +     KAL  F
Sbjct: 19  YAKMISFAGRISQPQLAADLFDEMEKRGIKKTAVSFNALI----HSYGRNNEAHKALQLF 74

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + MK    C+P +VTYN L+   ++    +++  LF +  E+  +PD +TYN ++  Y +
Sbjct: 75  EDMKATNDCQPTLVTYNTLISMYSRMGATEEMKKLFLDCKEAGFSPDRHTYNALIWGYMR 134

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + +ME   + +++ +CK D+IT+N  I  Y +  A +KME VF S M +   P    
Sbjct: 135 AGQLSQMEETFNELQAGECKADVITYNAQIIGYARANAVNKMEAVFSS-MQAAGIPINAM 193

Query: 194 FNSMIIN-YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY--GYCDNVSRAREIFD 250
              ++I  Y + +   K E     +  M  TP       + +M    Y D  ++  E+  
Sbjct: 194 VGEILIEVYSRTKHFEKME---NALKIMDVTPGVQYGSRVHSMVIESYAD-ANKLDEMEA 249

Query: 251 ELSKLGKDMKV----STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +S++ ++ ++     +L+A++ AY   G         E     G    SS Y +L   Y
Sbjct: 250 AISRMFQNKRMFSSPKSLHALIMAYSRAGEYGRLAKTMEVVKGAGWILQSSIYNILISEY 309

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRSL 361
            K    + ++++ + M      P       + ETF   +   ++ + + ++ R L
Sbjct: 310 GKGGHLDRMEQVFREMMDASCPP-------SFETFQYMIDAYEANNNEAEVDRIL 357



 Score = 42.4 bits (98), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 37/66 (56%)

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YNIL+    +  ++D++  +F+E+ ++   P   T+  ++DAY  N    E++ +L  M+
Sbjct: 302 YNILISEYGKGGHLDRMEQVFREMMDASCPPSFETFQYMIDAYEANNNEAEVDRILDLMR 361

Query: 149 SNQCKP 154
              C+P
Sbjct: 362 KAGCEP 367


>gi|410110117|gb|AFV61138.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           hermannioides]
          Length = 382

 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 141/294 (47%), Gaps = 6/294 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YNA+I        KAK   +
Sbjct: 3   GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFRE 58

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +MK      PN  +Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 59  ARSLISEMK-TAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMI 117

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +     +
Sbjct: 118 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIE 177

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSM++ YGK     KA  + Q+M +    P+ ITY  II+++G    + RA  +
Sbjct: 178 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAML 237

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKL 301
           F +L   G ++       M+ AY   GL   A  LL E      +  D++ + L
Sbjct: 238 FQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHIL 291



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 130/263 (49%), Gaps = 1/263 (0%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +KA+  F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  +Y+ 
Sbjct: 22  SKAISIFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 80

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +    
Sbjct: 81  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG      +A 
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G +    T + ++  +   G    A +LF+   + GV  D   ++ +  AY
Sbjct: 201 NLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 260

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            +A +    ++LL  +++   +P
Sbjct: 261 ERAGLVAHAKRLLHELKRPDNIP 283



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 141/340 (41%), Gaps = 42/340 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEM+ +G  P+ + Y+ L+T ++     
Sbjct: 32  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVEN--- 88

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 89  -KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 147

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 148 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 207

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           S   +P+ IT++ +I  +GK    D+   +F+ L  S  +     F +MI+ Y +A L  
Sbjct: 208 SRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVA 267

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++      P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 268 HAKRLLHELK----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKXITVFERMI 323

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
                    +    +F+    +G  PDS    ++  AY K
Sbjct: 324 HLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGK 363



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 119/250 (47%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           ++V Y+ L+    +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  S++
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
           S MK+    P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+ 
Sbjct: 64  SEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
            +  +A+ +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T 
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N+M+  Y       +A+ L +   + G+ P+S TY  +   + K    +    L +++  
Sbjct: 184 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRS 243

Query: 325 NGIVPNKRFF 334
           +G+  ++  F
Sbjct: 244 SGVEIDQILF 253



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 114/271 (42%), Gaps = 36/271 (13%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           +I V G+ G  + A  LF  MR  G  P+   YN L+  +      A+   +A+  F+ M
Sbjct: 116 MIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY----GDAELFGEAIHLFRLM 171

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +  +  + N+VTYN ++    +    ++ N L +E+    + P+  TY+ ++  +GK G 
Sbjct: 172 Q-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKXGK 230

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSY--------GKRQAFD--------------- 173
           +     +  +++S+  + D I F  +I +Y         KR   +               
Sbjct: 231 LDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHI 290

Query: 174 -----KMEQ---VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
                ++E+   VF+  + + E   +  F  MI    K +       VF KM  + Y P 
Sbjct: 291 LAGAGRIEEATYVFRQAIDAGEVKXITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPD 350

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLG 256
                 ++  YG      +A +++ E+ ++G
Sbjct: 351 SDVIAIVLNAYGKLQEFDKANDVYMEMQEVG 381


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 146/326 (44%), Gaps = 19/326 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--LHTRDKAKALA 67
           D  IYS +I  + K G    A +LFSEM   G  P+   YN +I           A+ L 
Sbjct: 290 DVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLL 349

Query: 68  KALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           + +        +ER   P+++T+N L+ A  +   + +   L  E+    + PD  TYN 
Sbjct: 350 RDM--------IEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 401

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  + K+    + + +   M S    PD++TFN +ID Y + +  D+  Q+ + +    
Sbjct: 402 MIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRG 457

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
                 T+N++I  + +      A+ +FQ+M +    P  IT  C I +YG+C+N  +  
Sbjct: 458 LVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTIT--CNILLYGFCENEKLEE 515

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A E+F+ +     D+     N ++   C      EA  LF +    GV PD  TY ++  
Sbjct: 516 ALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMIS 575

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
            +   +       L  +M+ NG  P+
Sbjct: 576 GFCGKSAISDANVLFHKMKDNGHEPD 601



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 168/352 (47%), Gaps = 26/352 (7%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  ++  M K G T+ A+ L S+M  +  +PD  +Y+A+I      +D   + A+ 
Sbjct: 255 DVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRL--CKDGHHSDAQY 312

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNG 126
           L  F +M  KG+    PN+ TYN ++   C+  R  D    L +++ E  + PD+ T+N 
Sbjct: 313 L--FSEMLEKGI---APNVFTYNCMIDGFCSFGRWSD-AQRLLRDMIEREINPDVLTFNA 366

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++ A  K G + E E +   M      PD +T+N +I  + K   FD  + +F  LM S 
Sbjct: 367 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMF-DLMAS- 424

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSR 244
             P + TFN++I  Y +A+   +   + ++++      +  TY  +I  +G+C  DN++ 
Sbjct: 425 --PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLI--HGFCEVDNLNA 480

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A+++F E+   G      T N +L  +C N    EA  LFE      +  D+  Y ++  
Sbjct: 481 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIH 540

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTD 356
              K +  +    L   +  +G+ P+       ++T++  ++G    SA +D
Sbjct: 541 GMCKGSKVDEAWDLFCSLPIHGVEPD-------VQTYNVMISGFCGKSAISD 585



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 142/315 (45%), Gaps = 11/315 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI  +  +G+   A  L ++M   G   D   Y  ++       D   AL       
Sbjct: 224 FNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSAL----NLL 279

Query: 74  QKMKGMERCKPNIVTYN-ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            KM+     KP++V Y+ I+ R C    + D    LF E+ E  +AP+++TYN ++D + 
Sbjct: 280 SKMEET-HIKPDVVIYSAIIDRLCKDGHHSD-AQYLFSEMLEKGIAPNVFTYNCMIDGFC 337

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
             G   + + +L  M   +  PD++TFN LI +  K     + E++   ++H    P   
Sbjct: 338 SFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTV 397

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+NSMI  + K      A+++F  M +    P  +T+  II +Y     V    ++  E+
Sbjct: 398 TYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREI 453

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           S+ G     +T N ++  +C       A  LF+   + GV PD+ T  +L   + +    
Sbjct: 454 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 513

Query: 313 ELVQKLLKRMEQNGI 327
           E   +L + ++ + I
Sbjct: 514 EEALELFEVIQMSKI 528



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 133/327 (40%), Gaps = 52/327 (15%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL-HTR-D 61
           +R    D   ++ LI+   K+G+   A  L  EM +    PD   YN++I     H R D
Sbjct: 354 EREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFD 413

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            AK +   +             P++VT+N ++    +A+ VD+   L +E+    L  + 
Sbjct: 414 DAKHMFDLMA-----------SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANT 462

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TYN ++  + +   +   + +   M S+   PD IT N+L+  + + +  ++  ++F+ 
Sbjct: 463 TTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEV 522

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC-- 239
           +  SK       +N                                     I ++G C  
Sbjct: 523 IQMSKIDLDTVAYN-------------------------------------IIIHGMCKG 545

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             V  A ++F  L   G +  V T N M+  +C     ++A++LF    + G  PD+STY
Sbjct: 546 SKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTY 605

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNG 326
             L +   KA   +   +L+  M  NG
Sbjct: 606 NTLIRGCLKAGEIDKSIELISEMRSNG 632



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/326 (20%), Positives = 142/326 (43%), Gaps = 19/326 (5%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           +K+I V  +  +  +A+ L+ +M       +   +N LI            L+ +L  F 
Sbjct: 110 NKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFC----DCHKLSFSLSTFG 165

Query: 75  KMKGMERCKPNIVTYNILLRA-CAQARNVD---------QVNALFKELHESILAPDIYTY 124
           K+  +   +P++VT+N LL   C + R  +         +  +LF ++ E  L P + T+
Sbjct: 166 KLTKLGF-QPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLTPVVITF 224

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N +++     G + E  +++++M       D++T+  +++   K         +   +  
Sbjct: 225 NTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEE 284

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NV 242
           +  KP +  ++++I    K      A+Y+F +M      P+  TY C+I   G+C     
Sbjct: 285 THIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMID--GFCSFGRW 342

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           S A+ +  ++ +   +  V T NA++ A    G   EA+ L +   +  + PD+ TY  +
Sbjct: 343 SDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSM 402

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIV 328
              + K N  +  + +   M    +V
Sbjct: 403 IYGFCKHNRFDDAKHMFDLMASPDVV 428



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  Y+ +I  M K  +   A  LF  +   G  PD   YN +I+          A++ A
Sbjct: 531 DTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFC----GKSAISDA 586

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F KMK     +P+  TYN L+R C +A  +D+   L  E+  +  + D +T   V D
Sbjct: 587 NVLFHKMKDNGH-EPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD 645

Query: 130 AYGKNGMIKEMESVLS 145
                 + K    +LS
Sbjct: 646 LITDGRLDKSFSDMLS 661



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 116/282 (41%), Gaps = 21/282 (7%)

Query: 64  KALAKALGYFQKMKGMERCKP--NIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           K+L  A+ +F  M    R +P    V  N ++    +    D   +L++++    +  +I
Sbjct: 85  KSLDDAIDFFDYMV---RSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNI 141

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI------DSYGKRQA-FDK 174
           Y++N ++  +     +    S   ++     +PD++TFN L+      D   +  A F  
Sbjct: 142 YSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGY 201

Query: 175 MEQ---VFKSLMHSKEKPTLPTFNSMIINYGKARLQGK---AEYVFQKMTAMKYTPSFIT 228
           M +   +F  ++     P + TFN++I       L+G+   A  +  KM         +T
Sbjct: 202 MVETGSLFDQMVEIGLTPVVITFNTLI---NGLCLEGRVLEAAALVNKMVGKGLHIDVVT 258

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
           Y  I+       +   A  +  ++ +      V   +A+++  C +G  ++A  LF    
Sbjct: 259 YGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEML 318

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             G+ P+  TY  +   +         Q+LL+ M +  I P+
Sbjct: 319 EKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPD 360


>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 583

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 148/358 (41%), Gaps = 45/358 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D+ + + +I    + G+   AM +F +M+  GC+P  S YN LI         A    ++
Sbjct: 91  DSILLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGF----GIAGRPYES 146

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +   + M   E  KPN  TYNIL++A    + +++   +  ++  S + PD+ TYN +  
Sbjct: 147 MKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMAR 206

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-- 187
           AY +NG  +  E ++ +M  N  KP+  T  ++I  Y K      M +  + L   KE  
Sbjct: 207 AYAQNGETERAERLILKMPYNIVKPNERTCGIIISGYCKE---GNMPEALRFLYRMKELG 263

Query: 188 -KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P    FNS+I  Y         +     M      P  +T+  I+  +     +    
Sbjct: 264 VDPNPVVFNSLIKGYLDTTDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMENCE 323

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF---------------------- 284
           EIF+++ K G +  +   + + + Y   G P +A+ L                       
Sbjct: 324 EIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGW 383

Query: 285 -------------ENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
                        E  H MG +P+  TY+ L   Y +A      ++LL  ME+ G+VP
Sbjct: 384 CAAGKMDRAFRLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEELLTTMEERGVVP 441



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 151/322 (46%), Gaps = 6/322 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+A + ++ + +    L S++ ++G +PD  + NA+I A      ++  + +A+  F
Sbjct: 60  YTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAF----SESGKVDEAMKIF 115

Query: 74  QKMKGMERCKPNIVTYNILLRACAQA-RNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           QKMK    CKP   TYN L++    A R  + +  L     +  + P+  TYN ++ A+ 
Sbjct: 116 QKMKEY-GCKPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWC 174

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
               ++E  +VL +M ++  +PD++T+N +  +Y +    ++ E++   + ++  KP   
Sbjct: 175 TKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETERAERLILKMPYNIVKPNER 234

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T   +I  Y K     +A     +M  +   P+ + +  +I  Y    + +   E    +
Sbjct: 235 TCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGVDEALTLM 294

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            + G    V T + ++ A+   GL    + +F +    G+ PD   Y +L K Y +A   
Sbjct: 295 EEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQP 354

Query: 313 ELVQKLLKRMEQNGIVPNKRFF 334
              + LL  M + G+ PN   F
Sbjct: 355 RKAEALLTSMSKYGVQPNVVIF 376



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 111/263 (42%), Gaps = 1/263 (0%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           KP ++TY  L+ A  + +    + AL  ++ ++ + PD    N +++A+ ++G + E   
Sbjct: 54  KPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSESGKVDEAMK 113

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYG-KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           +  +MK   CKP   T+N LI  +G   + ++ M+ +         KP   T+N +I  +
Sbjct: 114 IFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQDENVKPNDRTYNILIQAW 173

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
              +   +A  V  KM A    P  +TY  +   Y       RA  +  ++         
Sbjct: 174 CTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETERAERLILKMPYNIVKPNE 233

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T   ++  YC  G   EA         +GV P+   +  L K Y        V + L  
Sbjct: 234 RTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGVDEALTL 293

Query: 322 MEQNGIVPNKRFFLEALETFSSS 344
           ME+ GI P+   F   +  +SS+
Sbjct: 294 MEEFGIKPDVVTFSTIMNAWSSA 316



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 128/279 (45%), Gaps = 5/279 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +     + G+T  A  L  +M  +  +P+      +I+ +     K   + +A
Sbjct: 197 DVVTYNTMARAYAQNGETERAERLILKMPYNIVKPNERTCGIIISGYC----KEGNMPEA 252

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L +  +MK +    PN V +N L++      + + V+     + E  + PD+ T++ +M+
Sbjct: 253 LRFLYRMKEL-GVDPNPVVFNSLIKGYLDTTDTNGVDEALTLMEEFGIKPDVVTFSTIMN 311

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A+   G+++  E + + M     +PDI  +++L   Y +     K E +  S+     +P
Sbjct: 312 AWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAEALLTSMSKYGVQP 371

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  F ++I  +  A    +A  + +KM  M  +P+  TYE +I  YG      +A E+ 
Sbjct: 372 NVVIFTTIISGWCAAGKMDRAFRLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEELL 431

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
             + + G   ++ST+  + +A+   GL  EA+ +   S 
Sbjct: 432 TTMEERGVVPEMSTMQLVADAWRAIGLFKEANRILNGSE 470



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 111/234 (47%), Gaps = 5/234 (2%)

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +  A+F  L E    P + TY  ++ A  +    K + ++LS++  N  KPD I  N +I
Sbjct: 40  EAQAVFNNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMI 99

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK-Y 222
           +++ +    D+  ++F+ +     KPT  T+N++I  +G A    ++  + + M   +  
Sbjct: 100 NAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQDENV 159

Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD- 281
            P+  TY  +I  +     +  A  +  ++   G    V T N M  AY  NG    A+ 
Sbjct: 160 KPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETERAER 219

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKLLKRMEQNGIVPNKRFF 334
           L+ +  +N+ V P+  T  ++   Y K  NM E + + L RM++ G+ PN   F
Sbjct: 220 LILKMPYNI-VKPNERTCGIIISGYCKEGNMPEAL-RFLYRMKELGVDPNPVVF 271


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 147/319 (46%), Gaps = 9/319 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + K G T  A+ L  +M   GC+PD   YN +I +    R   +A+     +F
Sbjct: 179 YTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMY----FF 234

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   +   PN+VTY+ +L        +++  +LFK++    + P+  T+  ++D   K
Sbjct: 235 SEMVD-QGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCK 293

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            GMI E   V   M  N  +PD  T++ L+D Y  +   D+ +++F  ++     P++  
Sbjct: 294 EGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRV 353

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDE 251
           +N +I  + K+R   +A+ +  +M     TP  +TY  +  M G+C       A+++F E
Sbjct: 354 YNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTL--MQGFCQAGRPQVAQKLFKE 411

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G      T + +L+  C +G   EA  L +      + P    Y +L +       
Sbjct: 412 MCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGK 471

Query: 312 KELVQKLLKRMEQNGIVPN 330
            E  ++L   +   GI P+
Sbjct: 472 LEAARELFSNLFVKGIQPS 490



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 160/357 (44%), Gaps = 46/357 (12%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT-RDKAKALAKALG 71
           +++KL+  + KK      + L  +M  S  RP+      LI    H+ RD       ALG
Sbjct: 71  VFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSALG 130

Query: 72  YFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
              K+ G++   P  VT+  LL   C++A+ +D V  LF E+ +   AP + TY  ++  
Sbjct: 131 KMFKL-GLQ---PTHVTFGTLLNGLCSKAKIIDAVK-LFDEIGKMGFAPSLITYTTIIKG 185

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             K G       +L +M+   CKPD++ +N +IDS  K +  ++    F  ++     P 
Sbjct: 186 LCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPN 245

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREI 248
           + T++S++  +       +A  +F++M      P+ +T+  ++   G C    +  AR +
Sbjct: 246 VVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVD--GLCKEGMILEARRV 303

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE------------------NSH-- 288
           F+ +++ G +    T +A+++ YC+     EA  LF+                  N H  
Sbjct: 304 FEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCK 363

Query: 289 ---------------NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                          +  +TPD+ TY  L + + +A   ++ QKL K M   G++P+
Sbjct: 364 SRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPD 420



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 145/321 (45%), Gaps = 13/321 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +  L+  +  K +   A+ LF E+   G  P    Y  +I           AL       
Sbjct: 144 FGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNAL------- 196

Query: 74  QKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           Q +K ME   CKP++V YN ++ +  + R  ++    F E+ +  + P++ TY+ ++  +
Sbjct: 197 QLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGF 256

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
              G + E  S+  +M      P+ +TF +L+D   K     +  +VF+ +  +  +P  
Sbjct: 257 CNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDA 316

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIF 249
            T+++++  Y       +A+ +F  M    + PS   Y  +I   G+C +  ++ A+ + 
Sbjct: 317 YTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILIN--GHCKSRRLNEAKTLL 374

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+          T + +++ +C  G P  A  LF+   + G+ PDS TY +L     K 
Sbjct: 375 SEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKH 434

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +   +LLK M+++ I P+
Sbjct: 435 GHLDEAFRLLKAMQESKIEPH 455



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 152/335 (45%), Gaps = 11/335 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I  + K  +   AM+ FSEM + G  P+   Y+++    LH       L +A
Sbjct: 210 DVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSI----LHGFCNLGQLNEA 265

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F++M G     PN VT+ IL+    +   + +   +F+ + E+ + PD YTY+ +MD
Sbjct: 266 TSLFKQMIG-RNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMD 324

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y     + E + +   M      P +  +N+LI+ + K +  ++ + +   +      P
Sbjct: 325 GYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTP 384

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI---ITMYGYCDNVSRAR 246
              T+++++  + +A     A+ +F++M +    P  ITY  +   +  +G+ D   R  
Sbjct: 385 DTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLL 444

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           +   E SK+  +  +   N +++  C  G    A  LF N    G+ P   TY ++    
Sbjct: 445 KAMQE-SKI--EPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGL 501

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            K  +     ++ ++M  NG +PN   +  A++ F
Sbjct: 502 LKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGF 536



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 108/265 (40%), Gaps = 30/265 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKAL- 66
           D   YS L+     + Q   A  LF  M   G  P   VYN LI  H  +R  ++AK L 
Sbjct: 315 DAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLL 374

Query: 67  ---------AKALGYFQKMKGM--------------ERCK----PNIVTYNILLRACAQA 99
                       + Y   M+G               E C     P+ +TY+ILL    + 
Sbjct: 375 SEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKH 434

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
            ++D+   L K + ES + P I  YN ++      G ++    + S +     +P ++T+
Sbjct: 435 GHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTY 494

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
            ++I    K    ++  ++F+ ++ +   P   T+N  I  + +      A  + ++M  
Sbjct: 495 TVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVG 554

Query: 220 MKYTPSFITYECIITMYGYCDNVSR 244
             ++    T++ ++ +    + +SR
Sbjct: 555 RGFSADSSTFQMLLDLESNDEIISR 579



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 15/236 (6%)

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           ++P   T  G    Y     + +  +  +++   +  P ++ FN L+ S  K++ +  + 
Sbjct: 30  ISPSSITNGGFCSNYNNLHSVADAVASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVI 89

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ---KMTAMKYTPSFITYECII 233
            + K +  S  +P + T  +++IN      +    + F    KM  +   P+ +T+  ++
Sbjct: 90  SLCKQMDLSNIRPNVYTL-TILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLL 148

Query: 234 TMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
              G C    +  A ++FDE+ K+G    + T   +++  C  G  T A  L +     G
Sbjct: 149 N--GLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKG 206

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
             PD   Y  +  +  K             M   GI PN       + T+SS L G
Sbjct: 207 CKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPN-------VVTYSSILHG 255


>gi|297743170|emb|CBI36037.3| unnamed protein product [Vitis vinifera]
          Length = 646

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 150/340 (44%), Gaps = 32/340 (9%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA---- 65
           D   Y+ +I + GK G+   ++ LF EM   G  P+   YN +I A  + R   K     
Sbjct: 294 DEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLF 353

Query: 66  -------------------LAKALGYFQKMKGMERCKPNIVTYN---------ILLRACA 97
                              L + L          R   N+ +++          +L +  
Sbjct: 354 SKMVVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRLFCNMWSFHDEGDRDAYMSMLESLC 413

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
            A    +   L  ++HE  ++ D   YN V+ A GK     ++  +  +MK +   PDI 
Sbjct: 414 DAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIF 473

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           ++N+LI S+G+    ++  ++F+ L +S  KP + +FNS+I   GK     +A   F++M
Sbjct: 474 SYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEM 533

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
                +P  +TY  +I  +G  D V  A  +FDE+   G    + T N +L+    +G  
Sbjct: 534 REEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRT 593

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
            EA  L+      G+TPDS TY +L +  + ++ K  V++
Sbjct: 594 AEAVDLYAKLKQQGLTPDSITYAVLERLQSGSHQKVRVRR 633



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 137/335 (40%), Gaps = 36/335 (10%)

Query: 14  YSKLIAVMGKKGQTR------LAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           Y++L+ ++ K    R      L   +  +M   G R   S  N LI              
Sbjct: 155 YNRLLVILSKPSALRDSERLDLIRAILDDMERCGVRGSISTINILI-------------- 200

Query: 68  KALGYFQKMKGMERC---------KPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
              G F     +ERC         + N  TY  LL+A  ++ N ++   ++ EL      
Sbjct: 201 ---GIFGGGADVERCFDLVKKWDLQMNCYTYKCLLQAHLRSNNSNKAFEVYVELRRRGYK 257

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
            DI+ YN ++DA  K+  + ++  V   MK   C+PD  T+ ++I   GK    D+   +
Sbjct: 258 LDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTL 317

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT---YECIITM 235
           F+ +      P L  +N+MI      R+  K  ++F KM  ++ +  F+    Y  ++  
Sbjct: 318 FQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKM-VVEVSNKFMNKSIYAYLVRT 376

Query: 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
                + S A  +F  +     +       +MLE+ C  G  TEA  L    H   ++ D
Sbjct: 377 LSKLGHASEAHRLFCNMWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTD 436

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +  Y  +  A  K      +  L ++M+Q+G  P+
Sbjct: 437 TVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPD 471



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/367 (20%), Positives = 147/367 (40%), Gaps = 46/367 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R Y  D   Y+ L+  + K  +      +F +M+   C PD   Y  +I        K
Sbjct: 252 RRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMI----RMTGK 307

Query: 63  AKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFK----ELHESI 116
                ++L  FQ+M  KG     PN++ YN +++A A  R VD+   LF     E+    
Sbjct: 308 IGKADESLTLFQEMTEKGY---TPNLIAYNTMIQALANNRMVDKTIFLFSKMVVEVSNKF 364

Query: 117 LAPDIYTY--------------------------NGVMDAY-------GKNGMIKEMESV 143
           +   IY Y                           G  DAY          G   E   +
Sbjct: 365 MNKSIYAYLVRTLSKLGHASEAHRLFCNMWSFHDEGDRDAYMSMLESLCDAGKTTEALDL 424

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           LS++   +   D + +N ++ + GK +    +  +++ +      P + ++N +I ++G+
Sbjct: 425 LSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGR 484

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A    +A  +F+++      P  I++  +I   G   ++  A   F E+ + G    V T
Sbjct: 485 AGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVT 544

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            + ++E +        A  LF+     G +P+  TY +L     ++        L  +++
Sbjct: 545 YSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLK 604

Query: 324 QNGIVPN 330
           Q G+ P+
Sbjct: 605 QQGLTPD 611



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/334 (19%), Positives = 140/334 (41%), Gaps = 9/334 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  L+    +   +  A  ++ E+R  G + D   YN L+ A      K   + +    F
Sbjct: 228 YKCLLQAHLRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDA----LAKDNKVDQVYMVF 283

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + MK  + C+P+  TY I++R   +    D+   LF+E+ E    P++  YN ++ A   
Sbjct: 284 KDMK-RKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALAN 342

Query: 134 NGMIKEMESVLSRMK---SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           N M+ +   + S+M    SN+     I +  L+ +  K     +  ++F ++    ++  
Sbjct: 343 NRMVDKTIFLFSKMVVEVSNKFMNKSI-YAYLVRTLSKLGHASEAHRLFCNMWSFHDEGD 401

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
              + SM+ +   A    +A  +  K+   + +   + Y  +++  G     S   ++++
Sbjct: 402 RDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYE 461

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           ++ + G    + + N ++ ++   G   EA  +FE   N    PD  ++  L     K  
Sbjct: 462 KMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNG 521

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             +      K M + G+ P+   +   +E F  +
Sbjct: 522 DIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKT 555


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 156/344 (45%), Gaps = 16/344 (4%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M++Q+    D+  Y  LI+ M K+G+   A  +F EM   G RP   +YN LI    +  
Sbjct: 282 MKRQKIE-PDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKG 340

Query: 61  DKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
           +    L  A  Y  +M  KG+    P + TYN L+ A    +  D+   + KE+ E  ++
Sbjct: 341 N----LDMASAYKDEMLKKGIS---PTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGIS 393

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD  TYN +++ Y +    K+   +   M ++  KP   T+  L+    K+    + + +
Sbjct: 394 PDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDL 453

Query: 179 FKSLMHSKEKPTLPTFNSMIINY-GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           FK +      P    FN++I  +   + ++G  E + + M  MK  P  +T+  I  M G
Sbjct: 454 FKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFE-LLKDMDRMKVPPDEVTFNTI--MQG 510

Query: 238 YC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           +C    V  ARE+FDE+ + G      + N ++  Y   G   +A  +     + G  P 
Sbjct: 511 HCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPT 570

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
             TY  L +   K    +L ++LLK M   G+ P+   +   +E
Sbjct: 571 VLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIE 614



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 148/334 (44%), Gaps = 9/334 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K++  +      + L+++  K  +T  A  L++EM     +     +N +I        K
Sbjct: 178 KEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLC----K 233

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L KA  +   M+     KPNIVTYN ++     +  V+  +A+   +    + PD +
Sbjct: 234 EGKLKKAKDFVGHME-TSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSF 292

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++    K G ++E   +   M     +P  + +N LID +  +   D M   +K  
Sbjct: 293 TYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLD-MASAYKDE 351

Query: 183 MHSKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           M  K   PT+ T+NS+I      +   +AE + +++     +P  ITY  +I  Y  C N
Sbjct: 352 MLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCAN 411

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
             +A  + DE+   G      T  ++L          EAD LF+   + GV PD+  +  
Sbjct: 412 AKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNA 471

Query: 302 LYKAY-TKANMKELVQKLLKRMEQNGIVPNKRFF 334
           L   + + +N+K   + LLK M++  + P++  F
Sbjct: 472 LIDGHCSNSNVKGAFE-LLKDMDRMKVPPDEVTF 504



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 137/299 (45%), Gaps = 13/299 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ ++      G+   A  + + M+     PD   Y +LI+       K   L +A   F
Sbjct: 259 YNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMC----KQGRLEEASKIF 314

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           ++M  KG+   +P+ V YN L+       N+D  +A   E+ +  ++P + TYN ++ A 
Sbjct: 315 EEMVQKGL---RPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHAL 371

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
                  E E ++  ++     PD IT+N+LI+ Y +     K   +   ++ S  KPT 
Sbjct: 372 FMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTK 431

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIF 249
            T+ S++    K     +A+ +F+K+T+    P  I +  +I   G+C   NV  A E+ 
Sbjct: 432 KTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALID--GHCSNSNVKGAFELL 489

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            ++ ++       T N +++ +C  G   EA  LF+     G+ PD  ++  L   Y++
Sbjct: 490 KDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSR 548



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 125/273 (45%), Gaps = 7/273 (2%)

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           Y  K KG+    P I T N LL    +    +    L+ E+    +   +YT+N +++  
Sbjct: 175 YTMKEKGV---LPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVL 231

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G +K+ +  +  M+++  KP+I+T+N ++  Y      +  + +  ++   K +P  
Sbjct: 232 CKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDS 291

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIF 249
            T+ S+I    K     +A  +F++M      PS + Y  +I   G+C+  N+  A    
Sbjct: 292 FTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLID--GFCNKGNLDMASAYK 349

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE+ K G    +ST N+++ A  M     EA+ + +     G++PD+ TY +L   Y + 
Sbjct: 350 DEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRC 409

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
              +    L   M  +GI P K+ +   L   S
Sbjct: 410 ANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLS 442



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 84/210 (40%)

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           G    I+E+   L+  +        I F+ LI S       D+  + F ++      PT+
Sbjct: 127 GTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTI 186

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T NS++  + K      A  ++ +M  ++   S  T+  +I +      + +A++    
Sbjct: 187 ETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGH 246

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G    + T N ++  YC +G    AD +        + PDS TY  L     K   
Sbjct: 247 METSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGR 306

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            E   K+ + M Q G+ P+   +   ++ F
Sbjct: 307 LEEASKIFEEMVQKGLRPSAVIYNTLIDGF 336


>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
 gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
          Length = 718

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 147/303 (48%), Gaps = 6/303 (1%)

Query: 14  YSKLIAVMGKKG-QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           Y+ +I   GK G + +  + +F EM  +G +PD   +N+L+   + ++      A++L  
Sbjct: 150 YNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLA--VCSKGGLWEAARSLSC 207

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
               +G+++   +I TYN LL A  +   +D    +  E+    + P++ TY+ ++D Y 
Sbjct: 208 EMVNRGIDQ---DIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYA 264

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G + +  ++ + MK      D +++N L+  Y K   F++   V + + +S  +  + 
Sbjct: 265 KAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVV 324

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N+++  YGK         VF++M A   +P+ +TY  +I +Y        A ++F E 
Sbjct: 325 TYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREF 384

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            K G    V   +A+++A C NGL   A  L +     G+ P+  TY  +  A+ +    
Sbjct: 385 KKAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRPATT 444

Query: 313 ELV 315
           E V
Sbjct: 445 ESV 447



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 146/331 (44%), Gaps = 8/331 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +S +I+  G+ G    A+ +F  M++ G +P+   YNA+I A            + L  F
Sbjct: 115 FSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDA---CGKGGVEFKRVLEIF 171

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M   GM+   P+ +T+N LL  C++    +   +L  E+    +  DI+TYN ++DA 
Sbjct: 172 DEMLRNGMQ---PDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAV 228

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G +     ++S M +    P+++T++ +ID Y K    D    +F  +         
Sbjct: 229 CKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDR 288

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            ++N+++  Y K     +A  V ++M         +TY  ++  YG        R++F+E
Sbjct: 289 VSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEE 348

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +        + T + +++ Y   GL  EA  +F      G+  D   Y  L  A  K  +
Sbjct: 349 MKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGL 408

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            E    LL  M + GI PN   +   ++ F 
Sbjct: 409 VESAVSLLDEMTKEGIRPNVVTYNSIIDAFG 439



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 148/321 (46%), Gaps = 38/321 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+++  K G+   AM +  EM NSG R D   YNAL+  +   + K   + K    F
Sbjct: 291 YNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGY-GKQYKYDVVRKV---F 346

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++MK      PN++TY+ L+   ++     +   +F+E  ++ L  D+  Y+ ++DA  K
Sbjct: 347 EEMKA-RHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCK 405

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM------------------ 175
           NG+++   S+L  M     +P+++T+N +ID++G+    + +                  
Sbjct: 406 NGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRPATTESVVDDAGQTSELQIDSLSSS 465

Query: 176 --EQVFKSLMHSKE-KPTLPTFNSMIIN-YGKARLQGKAEY-----VFQKMTAMKYTPSF 226
             E+  KSL+  +E    +  F  +     G+A+  G  E      VF KM  ++  P+ 
Sbjct: 466 AVEKATKSLVADREDNRIIKIFGQLAAEKAGQAKNSGGQEMMCILGVFHKMHELEIKPNV 525

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           +T+  I+     C++   A  + +EL +L  +      + +L  Y  N +  +A  LF+ 
Sbjct: 526 VTFSAILNACSRCNSFEEASMLLEEL-RLFDNQVYGVAHGLLMGYREN-VWEQAQSLFDE 583

Query: 287 SHNMGVTPDSSTYKLLYKAYT 307
              M    DSST    Y A T
Sbjct: 584 VKLM----DSSTASAFYNALT 600



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 117/258 (45%), Gaps = 1/258 (0%)

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-IKEMESVL 144
           +  ++ ++ A  ++   ++   +F  + +  L P++ TYN V+DA GK G+  K +  + 
Sbjct: 112 VYAFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEIF 171

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             M  N  +PD ITFN L+    K   ++    +   +++      + T+N+++    K 
Sbjct: 172 DEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKG 231

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
                A  +  +M A    P+ +TY  +I  Y     +  AR +F+E+  LG  +   + 
Sbjct: 232 GQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSY 291

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N +L  Y   G   EA  +     N G+  D  TY  L   Y K    ++V+K+ + M+ 
Sbjct: 292 NTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKA 351

Query: 325 NGIVPNKRFFLEALETFS 342
             + PN   +   ++ +S
Sbjct: 352 RHVSPNLLTYSTLIDVYS 369



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 7/200 (3%)

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           G+ G ++  ++V     +      +  F+ +I +YG+    ++  ++F S+     KP L
Sbjct: 88  GRLGKVEMAKTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNL 147

Query: 192 PTFNSMIINYGKARLQGKAEY-VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
            T+N++I   GK  ++ K    +F +M      P  IT+  ++ +         AR +  
Sbjct: 148 VTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSC 207

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKAYT 307
           E+   G D  + T N +L+A C  G   + D+ FE    M    + P+  TY  +   Y 
Sbjct: 208 EMVNRGIDQDIFTYNTLLDAVCKGG---QLDMAFEIMSEMPAKNILPNVVTYSTMIDGYA 264

Query: 308 KANMKELVQKLLKRMEQNGI 327
           KA   +  + L   M+  GI
Sbjct: 265 KAGRLDDARNLFNEMKFLGI 284


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 142/324 (43%), Gaps = 15/324 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI    + G        F  +  +G R D    N L+    H +   +A+   L   
Sbjct: 93  YSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDVLL--- 149

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL---HESILAPDIYTYNGVMDA 130
           Q+M  +  C P+ V+Y ILL+     +  ++   L   +   H     P++ +Y+ V++ 
Sbjct: 150 QRMPELG-CMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVING 208

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           +   G + +  ++   M      PD++T+  +ID   K Q FD+ E VF+ ++ +  KP 
Sbjct: 209 FFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPN 268

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             T+N +I  Y       +   + ++M+A    P   TY  ++           AR  FD
Sbjct: 269 NYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFD 328

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEA----DLLFENSHNMGVTPDSSTYKLLYKAY 306
            + + G   KVST   ++  Y   G  +E     DL+ EN    G++PD   + + + AY
Sbjct: 329 SMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVEN----GLSPDHHIFNIFFSAY 384

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K  M +    +  +M Q+G+ PN
Sbjct: 385 AKCGMIDKAMDIFNKMRQHGLSPN 408



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 143/318 (44%), Gaps = 9/318 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI      G+ +  + +  EM   G +PD   Y +L+  +L    + +   +A  +F
Sbjct: 272 YNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLN-YLCKNGRCR---EARFFF 327

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             M  KG+   KP + TY IL+   A    + ++++    + E+ L+PD + +N    AY
Sbjct: 328 DSMIRKGI---KPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAY 384

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K GMI +   + ++M+ +   P+++ +  LID+  K    D  E  F  +++    P +
Sbjct: 385 AKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNI 444

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             FNS++          +AE +  +M      P+ + +  +I        V   R + D 
Sbjct: 445 VVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDL 504

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +  +G      +   ++  YC+ G   EA+ +F+   ++G++P   TY  L   Y  A+ 
Sbjct: 505 MEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASR 564

Query: 312 KELVQKLLKRMEQNGIVP 329
            +    L + M + G+ P
Sbjct: 565 IDDAYCLFREMLRKGVTP 582



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 138/341 (40%), Gaps = 45/341 (13%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           L   M   GC PD   Y  L+    + +   +AL   L +        RC PN+V+Y+I+
Sbjct: 148 LLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALE--LLHMMADDHGRRCPPNVVSYSIV 205

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +        VD+   LF E+ +  + PD+ TY  V+D   K  +    E V  +M  N  
Sbjct: 206 INGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGF 265

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY----GKARLQG 208
           KP+  T+N LI  Y     + ++ Q+ + +     KP   T+ S++ NY    G+ R   
Sbjct: 266 KPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLL-NYLCKNGRCR--- 321

Query: 209 KAEYVFQKMTAMKYTPSFITYECII----------------------------------- 233
           +A + F  M      P   TY  +I                                   
Sbjct: 322 EARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFF 381

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
           + Y  C  + +A +IF+++ + G    V    A+++A C  G   +A++ F    N GVT
Sbjct: 382 SAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVT 441

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           P+   +  L       +  E  ++L+  M   GI PN  FF
Sbjct: 442 PNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFF 482



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 137/321 (42%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  I++   +   K G    AM +F++MR  G  P+   Y ALI A         A  K 
Sbjct: 373 DHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVK- 431

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F +M   E   PNIV +N L+         ++   L  E+ +  + P+   +N ++ 
Sbjct: 432 ---FNQMIN-EGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLIC 487

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
                G + E   ++  M+    +PD  ++  LI  Y      D+ E+VF  ++     P
Sbjct: 488 NLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSP 547

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           T  T+N+++  Y  A     A  +F++M     TP  +TY  I+         S A+E++
Sbjct: 548 TEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELY 607

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             +   G    + T N +L   C +    EA  +F++  + G+  +  T+ ++  A  K 
Sbjct: 608 LNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKG 667

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
             KE    L   +  NG+VPN
Sbjct: 668 GRKEDAMDLFAAIPANGLVPN 688



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 138/368 (37%), Gaps = 44/368 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I     +GQ      LF EM + G  PD   Y  +I        KA+   +A G F
Sbjct: 202 YSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLC----KAQLFDRAEGVF 257

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           Q+M   G    KPN  TYN L+          +V  + +E+    L PD YTY  +++  
Sbjct: 258 QQMIDNGF---KPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYL 314

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            KNG  +E       M     KP + T+ +LI  Y  + A  +M      ++ +   P  
Sbjct: 315 CKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDH 374

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT----------------- 234
             FN     Y K  +  KA  +F KM     +P+ + Y  +I                  
Sbjct: 375 HIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQ 434

Query: 235 ----------------MYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
                           +YG C  D   RA E+  E+   G        N ++   C  G 
Sbjct: 435 MINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGR 494

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
             E   L +   ++GV PD+ +Y  L   Y      +  +K+   M   G+ P +  +  
Sbjct: 495 VMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNT 554

Query: 337 ALETFSSS 344
            L  + S+
Sbjct: 555 LLHGYCSA 562



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 135/319 (42%), Gaps = 5/319 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G+   A   F++M N G  P+  V+N+L+   L T DK +  A+ L Y 
Sbjct: 412 YGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYG-LCTVDKWER-AEELVYE 469

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
              +G+  C PN V +N L+        V +   L   +    + PD ++Y  ++  Y  
Sbjct: 470 MLDQGI--C-PNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCL 526

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G   E E V   M S    P  +T+N L+  Y      D    +F+ ++     P + T
Sbjct: 527 TGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVT 586

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N+++    + +   +A+ ++  M          TY  I+      + V  A ++F  L 
Sbjct: 587 YNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLC 646

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G  + + T   M+ A    G   +A  LF      G+ P+  TY+L+ +   +    E
Sbjct: 647 SKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLE 706

Query: 314 LVQKLLKRMEQNGIVPNKR 332
               L   ME+NG  PN +
Sbjct: 707 EFDSLFSAMEKNGTAPNSQ 725



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 121/293 (41%), Gaps = 9/293 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+     G+T  A  +F  M + G  P    YN L    LH    A  +  A
Sbjct: 513 DAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTL----LHGYCSASRIDDA 568

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F++M  KG+    P +VTYN +L    Q +   +   L+  +  S    DIYTYN +
Sbjct: 569 YCLFREMLRKGV---TPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNII 625

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++   K+  + E   +   + S   + +IITF ++I +  K    +    +F ++  +  
Sbjct: 626 LNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGL 685

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P + T+  +  N  +     + + +F  M      P+      ++    +  ++SRA  
Sbjct: 686 VPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGA 745

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
              +L +    ++ ST + ++  +  +     A  L E  H +     S+  K
Sbjct: 746 YLSKLDERNFSVEASTTSLLMSIFTSDEYQHHAKSLPEKYHFLNEANSSALIK 798



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 7/162 (4%)

Query: 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM------KYTP 224
             D   ++F  L+H     ++  FN ++    +AR    +E        M      K  P
Sbjct: 29  GLDDALKLFDELLHHARPASVRAFNHLLTAVSRARCSSASELAVSHFNRMVRECSDKVAP 88

Query: 225 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA-DLL 283
           +  TY  +I  +    ++      F  + K G  M    +N +L+  C      EA D+L
Sbjct: 89  NLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDVL 148

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            +    +G  PD+ +Y +L K        E   +LL  M  +
Sbjct: 149 LQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADD 190


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 153/343 (44%), Gaps = 21/343 (6%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++ ++ DT  Y+K+I  + +  +   +  LF EM+ +G  PD   Y  LI +      KA
Sbjct: 445 RKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFC----KA 500

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             + +A  +F +M+ +  C PN+VTY  LL A  +++ + Q + +F  + ++   P+  T
Sbjct: 501 GLIEQARSWFDEMRSV-GCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVT 559

Query: 124 YNGVMDAYGKNGMIKEMESVLSRM--------------KSNQC--KPDIITFNLLIDSYG 167
           Y+ ++D   K G I++   V  ++               ++ C   P+++T+  LID   
Sbjct: 560 YSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLC 619

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
           K Q      ++  +++ +  +P    ++++I  + K      A+ VF +MT   Y PS  
Sbjct: 620 KAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVH 679

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           TY  +I        +  A ++  E+     +  V T  AM++     G   +A  L    
Sbjct: 680 TYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLM 739

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              G +P+  TY  L     K    +   KL K+M   G  PN
Sbjct: 740 EEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPN 782



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 150/355 (42%), Gaps = 21/355 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI    K G    A   F EMR+ GC P+   Y AL+ A+L    K+K L +A
Sbjct: 486 DVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYL----KSKQLIQA 541

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL----------------H 113
              F +M     C PN VTY+ L+    +A  + +   ++++L                 
Sbjct: 542 HDIFHRMVDAA-CYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGND 600

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
              +AP++ TY  ++D   K   + +   +L  M +  C+P+ I ++ LID + K    D
Sbjct: 601 TCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKID 660

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
             ++VF  +      P++ T+ S+I    K      A  V  +M      P+ +TY  +I
Sbjct: 661 NAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMI 720

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
                   + +A  +   + + G    V T  A+++     G    +  LF+  ++ G  
Sbjct: 721 DGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCA 780

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 348
           P+  TY++L      A + +    LL  M+      + + +  A++ FS     S
Sbjct: 781 PNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIAS 835



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 123/276 (44%), Gaps = 18/276 (6%)

Query: 73  FQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           FQ +K M R    P+  TY  ++    QA+ V++   LF+E+  + + PD+YTY  ++D+
Sbjct: 437 FQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDS 496

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K G+I++  S    M+S  C P+++T+  L+ +Y K +   +   +F  ++ +   P 
Sbjct: 497 FCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPN 556

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMK----------------YTPSFITYECIIT 234
             T++++I    KA    KA  V++K+                      P+ +TY  +I 
Sbjct: 557 AVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALID 616

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
                  VS A E+ D +   G +      +A+++ +C  G    A  +F      G  P
Sbjct: 617 GLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLP 676

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              TY  L     K    +L  K+L  M  +   PN
Sbjct: 677 SVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPN 712



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 142/331 (42%), Gaps = 35/331 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEM--------------RNSGCRPDPSV--YNALITAHL 57
           YS LI  + K G+ + A  ++ ++               N  C   P+V  Y ALI    
Sbjct: 560 YSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLC 619

Query: 58  HTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
               KA+ ++ A      M     C+PN + Y+ L+    +   +D    +F  + +   
Sbjct: 620 ----KAQKVSDAHELLDAMLA-AGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGY 674

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
            P ++TY  ++D   K+G +     VLS M ++ C P+++T+  +ID   K    +K   
Sbjct: 675 LPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALN 734

Query: 178 VFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           +  SLM  K   P + T+ ++I   GK      +  +F++M +    P+++TY  +I   
Sbjct: 735 LL-SLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLI--- 790

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY--CMNGLPTE--ADL-LFENSHNMG 291
               N   A  + DE   L  +MK +     L+ Y   + G   +  A L L E   +  
Sbjct: 791 ----NHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLLEEMESHE 846

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
             P +  Y +L  +++KA   E   +L K +
Sbjct: 847 TVPIAPVYGMLIDSFSKAGRLETALELHKEL 877



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/356 (21%), Positives = 142/356 (39%), Gaps = 45/356 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSG---------------CR-------------PD 45
           Y+ L+ V+   GQ  +   +  EM  SG               C+              D
Sbjct: 207 YNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFAQALCKVGRWADALNMLEKED 266

Query: 46  PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQV 105
            ++   L T  +    +A    +A+ +  +M+    C PN+VTY  LL    + +     
Sbjct: 267 FNLDTVLCTQMISGLMEASLFNEAMSFLHRMR-CNSCIPNVVTYRTLLSGFLKKKQFGWC 325

Query: 106 NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
             +   +      P+   +N ++  Y   G       + +RM +    P  + +N+ I S
Sbjct: 326 KRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGS 385

Query: 166 YGKRQAF------DKMEQVFKSLMHSK---EKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
              ++        D +E+V++ ++ +     K     F+  +   GK     KA  + ++
Sbjct: 386 ICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFE---KAFQILKE 442

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M    + P   TY  +IT       V ++  +F E+ + G +  V T   +++++C  GL
Sbjct: 443 MMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGL 502

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ--KLLKRMEQNGIVPN 330
             +A   F+   ++G +P+  TY  L  AY K+  K+L+Q   +  RM      PN
Sbjct: 503 IEQARSWFDEMRSVGCSPNVVTYTALLHAYLKS--KQLIQAHDIFHRMVDAACYPN 556



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 146/359 (40%), Gaps = 33/359 (9%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I +   Y  L++   KK Q      + + M   GC P+PS++N+L+  + +  D A A  
Sbjct: 303 IPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYA-- 360

Query: 68  KALGYFQKMKGMERC--KPNIVTYNILLRA-CAQ-----ARNVDQVNALFKE-LHESILA 118
                ++    M  C   P  V YNI + + C Q     A  +D V  +++E L  S + 
Sbjct: 361 -----YKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVL 415

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
             + T N      G  G  ++   +L  M      PD  T+  +I    + +  +K   +
Sbjct: 416 NKVNTANFSRCLCGV-GKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLL 474

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           F+ +  +   P + T+  +I ++ KA L  +A   F +M ++  +P+ +TY  ++  Y  
Sbjct: 475 FQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLK 534

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL----------------PTEADL 282
              + +A +IF  +          T +A+++  C  G                   E+D 
Sbjct: 535 SKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDF 594

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            FE +    + P+  TY  L     KA       +LL  M   G  PN+  +   ++ F
Sbjct: 595 YFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGF 653



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 121/307 (39%), Gaps = 45/307 (14%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y+     Y+ LI  M K G+  LAM + SEM N  C P+   Y A+I        K   +
Sbjct: 674 YLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDG----LSKVGEI 729

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            KAL     M+  + C PN+VTY  L+    +    D    LFK+++    AP+  TY  
Sbjct: 730 EKALNLLSLME-EKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRV 788

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++     G++ E   +L  MK       +  ++  +  + K+  F     + + +   +
Sbjct: 789 LINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKK--FIASLGLLEEMESHE 846

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P  P +  +I ++ KA   G+ E                                 A 
Sbjct: 847 TVPIAPVYGMLIDSFSKA---GRLE--------------------------------TAL 871

Query: 247 EIFDELSKLGKDMKVSTLN---AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           E+  EL ++   + +++     ++++A C+     EA  L+      G+ PD   +  L 
Sbjct: 872 ELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLV 931

Query: 304 KAYTKAN 310
           K   + N
Sbjct: 932 KGLIEVN 938



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 123/313 (39%), Gaps = 23/313 (7%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT + +++I+ + +      AM     MR + C P+   Y  L++  L          K 
Sbjct: 270 DTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKK--------KQ 321

Query: 70  LGYFQKMKGM---ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            G+ +++  M   E C PN   +N L+     A +      LF  +      P    YN 
Sbjct: 322 FGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNI 381

Query: 127 VMDAYGKNG------MIKEMESVLSRMKSNQC---KPDIITFNLLIDSYGKRQAFDKMEQ 177
            + +           ++  +E V   M +  C   K +   F+  +   GK   F+K  Q
Sbjct: 382 FIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGK---FEKAFQ 438

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           + K +M     P   T+  +I    +A+   K+  +FQ+M      P   TY  +I  + 
Sbjct: 439 ILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFC 498

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
               + +AR  FDE+  +G    V T  A+L AY  +    +A  +F    +    P++ 
Sbjct: 499 KAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAV 558

Query: 298 TYKLLYKAYTKAN 310
           TY  L     KA 
Sbjct: 559 TYSALIDGLCKAG 571



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 136/369 (36%), Gaps = 59/369 (15%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMW-----LFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           D  +  +L+ V+ ++   R  +W         +++ G RP    YNAL+         A 
Sbjct: 164 DREVLRRLLNVLVRRC-CRHGLWDEALEELGRLKDFGYRPSAVTYNALV----QVLASAG 218

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH--ESILAPDIY 122
            +       ++M     C             C   R  D +N L KE    +++L   + 
Sbjct: 219 QVEMGFRVQKEMSASGFCMDRSTIGYFAQALCKVGRWADALNMLEKEDFNLDTVLCTQMI 278

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +  G+M+A     +  E  S L RM+ N C P+++T+  L+  + K++ F   +++   +
Sbjct: 279 S--GLMEA----SLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMM 332

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII--------- 233
           M     P    FNS++  Y  A     A  +F +MT     P ++ Y   I         
Sbjct: 333 MTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEEL 392

Query: 234 ---------------TMYGYC-------DNVSR----------AREIFDELSKLGKDMKV 261
                           +   C        N SR          A +I  E+ + G     
Sbjct: 393 PNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDT 452

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
           ST   ++   C      ++ LLF+     GV PD  TY +L  ++ KA + E  +     
Sbjct: 453 STYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDE 512

Query: 322 MEQNGIVPN 330
           M   G  PN
Sbjct: 513 MRSVGCSPN 521


>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 560

 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 134/289 (46%), Gaps = 8/289 (2%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL +F   K  E  K ++ TY  ++    +ARN +  + L +E+      P + TYN ++
Sbjct: 50  ALKFFDWAKEQEGYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRLI 109

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            AYG+   + E   +  +M+   C PD +T+  L+D + K    D    +++ +  +  +
Sbjct: 110 HAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQ 169

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   T++ +I   GKA    +A  +F++M    + PS +TY  II +     N   A ++
Sbjct: 170 PDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKL 229

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           ++++   G      T + M+E     G   EA+L+F      G  PD+  Y ++   + K
Sbjct: 230 YNDMQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVDMWGK 289

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDL 357
           A   E   +  ++M  +G+ PN +         S+SL GS     + DL
Sbjct: 290 ARNAERALEWYQKMLDSGLTPNVQ--------ISNSLLGSYLRMQQFDL 330



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 144/323 (44%), Gaps = 11/323 (3%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           ++Q  Y  D   Y+ +I +MG+         L  EMR  GC P    YN LI    H   
Sbjct: 58  KEQEGYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRLI----HAYG 113

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           +A  L +A+  F +M+  E C P+ VTY  L+   ++A   D    +++++ ++   PD 
Sbjct: 114 RANFLGEAMRIFYQMQE-EGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDT 172

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           +TY+ ++   GK G + E   +   M      P ++T+N++ID   K   +    +++  
Sbjct: 173 FTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYND 232

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           +  +   P   T++ M+   G+     +AE +F +M    + P    Y  ++ M+G   N
Sbjct: 233 MQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVDMWGKARN 292

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF---ENSHNMGVTPDSST 298
             RA E + ++   G    V   N++L +Y       + DL F   E     G+ P   T
Sbjct: 293 AERALEWYQKMLDSGLTPNVQISNSLLGSYLRM---QQFDLAFGVIETMKAWGLVPTLQT 349

Query: 299 YKLLYKAYTKANMKELVQKLLKR 321
           + +L  + T +     V  L+ R
Sbjct: 350 HTILLSSCTASAQHHQVVNLMHR 372


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 149/354 (42%), Gaps = 48/354 (13%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K R +  +  +Y+ L     K G+ + A+ +F  + +    PD   YNA+I  H    D 
Sbjct: 187 KVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPS----PDAIAYNAIIHGHCRKNDC 242

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
             AL      F K     +  P++ TYNIL+    +A   D+ + +  E+ +  + PD  
Sbjct: 243 DGALE-----FLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTV 297

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCK----------------------------- 153
           T+N +MD   K G  +   S+L+ M    C+                             
Sbjct: 298 TFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEF 357

Query: 154 ------PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
                 PD++T+++L D   KR   D+  ++ K +      P L T+N++I    KA   
Sbjct: 358 VSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKT 417

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLN 265
            KA  + + + +  + P  +TY  I+   G C    + +A ++ + + K G    V T  
Sbjct: 418 EKAYELLESLVSSGFVPDVVTYTIIVD--GLCKEGRLDKALKMVEGMLKRGCTPSVITYT 475

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
           A++E  C  G   EA  +F+   +   T D+  Y  L   Y K++  +  QK++
Sbjct: 476 ALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVV 529



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 146/332 (43%), Gaps = 18/332 (5%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--D 61
            R    DT  ++ ++  + K G+   A  L + M    CRP    YN LI+     +  D
Sbjct: 289 DRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVD 348

Query: 62  KAKALAKAL---GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
           +AK L       G+           P++VTY+IL     +   +D+   L KE+      
Sbjct: 349 RAKDLVDEFVSSGFV----------PDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCT 398

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           P++ TYN ++D   K    ++   +L  + S+   PD++T+ +++D   K    DK  ++
Sbjct: 399 PNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKM 458

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
            + ++     P++ T+ +++    +     +A ++F++M +   T   + Y  ++   GY
Sbjct: 459 VEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVN--GY 516

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
           C + SR +E    +  +     +   NA+++ YC  G   E   +FE+    G  P+  T
Sbjct: 517 CKS-SRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKT 575

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y ++     K    +     L+ M   G VP+
Sbjct: 576 YNIVMDGLCKHGKVDEAFPFLESMHSAGCVPD 607



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 140/326 (42%), Gaps = 13/326 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D+  Y  +I  + +  Q   A  +  + +  G +P+ SVY  L  A      K   L
Sbjct: 156 YAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFC----KTGRL 211

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             AL  F+ +       P+ + YN ++    +  + D      KE++E  +APD++TYN 
Sbjct: 212 KDALEIFRNIP-----SPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNI 266

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++D   K     +   +L  M      PD +TFN ++D   K   F++   +   +    
Sbjct: 267 LIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERN 326

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSR 244
            +P+  T+N++I    K +   +A+ +  +  +  + P  +TY   I   G C    +  
Sbjct: 327 CRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYS--ILADGLCKRGRIDE 384

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A E+  E+S  G    + T N +++  C      +A  L E+  + G  PD  TY ++  
Sbjct: 385 AFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVD 444

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
              K    +   K+++ M + G  P+
Sbjct: 445 GLCKEGRLDKALKMVEGMLKRGCTPS 470



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 137/311 (44%), Gaps = 9/311 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + + G+   A  +F EM +  C  D   Y +L+  +  +    +A        
Sbjct: 474 YTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEA-------- 525

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           QK+    R  P I  YN L+    +   +D++  +F+++      P+I TYN VMD   K
Sbjct: 526 QKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCK 585

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G + E    L  M S  C PD++++N++ID   K     +  QV   ++ +   P   T
Sbjct: 586 HGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVT 645

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N+++  + K      A  + + M      P  +TY  +I+     + +  A E+  E+ 
Sbjct: 646 YNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEML 705

Query: 254 KLGKDMK-VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           + G  +   +T N +++  C  G   +A LL ++    GV  ++ TY +      K    
Sbjct: 706 RNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRL 765

Query: 313 ELVQKLLKRME 323
           +    LL  M+
Sbjct: 766 DEASSLLSEMD 776



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 144/357 (40%), Gaps = 43/357 (12%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA- 65
           ++ D   YS L   + K+G+   A  L  EM   GC P+   YN LI          KA 
Sbjct: 362 FVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAY 421

Query: 66  ------------------------------LAKALGYFQKMKGMER-CKPNIVTYNILLR 94
                                         L KAL   + M  ++R C P+++TY  L+ 
Sbjct: 422 ELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGM--LKRGCTPSVITYTALME 479

Query: 95  ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
              +   VD+ + +FKE+       D   Y  +++ Y K+   KE + V+  ++     P
Sbjct: 480 GLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGT---P 536

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
            I  +N L+D Y K    D++  VF+ +      P + T+N ++    K    GK +  F
Sbjct: 537 YIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCK---HGKVDEAF 593

Query: 215 ---QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
              + M +    P  ++Y  II           AR++ D++ + G      T N ++  +
Sbjct: 594 PFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQF 653

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           C      +A  + +N    GV PD+ TY  L    ++ N      +L+  M +NG V
Sbjct: 654 CKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCV 710



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 138/356 (38%), Gaps = 42/356 (11%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD   Y  L+    K  +T+ A  +   +R +   P   VYNAL+  +     K   L +
Sbjct: 504 ADALAYVSLVNGYCKSSRTKEAQKVVDGIRGT---PYIDVYNALMDGYC----KEGRLDE 556

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
               F+ M     C PNI TYNI++    +   VD+     + +H +   PD+ +YN ++
Sbjct: 557 IPNVFEDM-ACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIII 615

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D   K    KE   VL +M      PD +T+N L+  + K + FD    + K+++ +   
Sbjct: 616 DGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVD 675

Query: 189 PTLPTFNSMIINYGKARLQGKA-EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           P   T+N++I    +    G A E + + +       +  TY  II        + +A  
Sbjct: 676 PDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALL 735

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM----------------- 290
           + D ++  G +    T N  ++  C  G   EA  L      +                 
Sbjct: 736 LMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCKAE 795

Query: 291 ----------------GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                           G+   S T+ LL  A+TK    +    LL  M Q G  P+
Sbjct: 796 QLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPS 851



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 125/314 (39%), Gaps = 43/314 (13%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ +I  + K  + + A  +  +M  +G  PD   YN L+        K +   
Sbjct: 605 VPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFC----KEERFD 660

Query: 68  KALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKE-LHESILAPDIYTY 124
            A+G  + M   G++   P+ VTYN L+   +Q   +     L  E L    +     TY
Sbjct: 661 DAVGILKNMIKAGVD---PDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTY 717

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD----------- 173
           N ++D   K G +K+   ++  M  +  + + +T+N+ ID   K    D           
Sbjct: 718 NTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDT 777

Query: 174 ---------------KMEQVFKSLMHSKEKP-------TLPTFNSMIINYGKARLQGKAE 211
                          K EQ+ ++   ++E         T  TFN +I  + K +   +A 
Sbjct: 778 LRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEAL 837

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
            +   M     +PS ITY  +IT     D V +A E+FDE++  G      +   ++   
Sbjct: 838 TLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGL 897

Query: 272 CMNGLPTEADLLFE 285
           C  G   EA  + E
Sbjct: 898 CGQGRGKEALQVLE 911



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 118/318 (37%), Gaps = 74/318 (23%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD------------- 129
           K +  T N  L+   +  + D++ A+F+ + ++  APD YTY+ V+              
Sbjct: 122 KHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFT 181

Query: 130 ----------------------AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
                                 A+ K G +K+   +   + S    PD I +N +I  + 
Sbjct: 182 MLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPS----PDAIAYNAIIHGHC 237

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
           ++   D   +  K +   K  P + T+N +I    KA    KA  +  +M     TP  +
Sbjct: 238 RKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTV 297

Query: 228 TYECIIT---------------------------------MYGYC--DNVSRAREIFDEL 252
           T+  I+                                  + G C   NV RA+++ DE 
Sbjct: 298 TFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEF 357

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G    V T + + +  C  G   EA  L +     G TP+  TY  L     KA+  
Sbjct: 358 VSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKT 417

Query: 313 ELVQKLLKRMEQNGIVPN 330
           E   +LL+ +  +G VP+
Sbjct: 418 EKAYELLESLVSSGFVPD 435



 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 49  YNALITAHLHTRDKAKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNA 107
           +N LI A      K K L +AL     M  ++R C P+++TYN+++    +   VD+   
Sbjct: 820 FNLLIDAFT----KTKRLDEALTLLGLM--VQRGCSPSVITYNMVITCLCKLDKVDKAWE 873

Query: 108 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
           LF E+    +     +Y  ++      G  KE   VL  M S+ C+ D
Sbjct: 874 LFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEID 921


>gi|255661208|gb|ACU25773.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 426

 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 157/327 (48%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K     KP++V YN ++    +A+   +  +L  E+ E+ + PD  
Sbjct: 61  SKAIS----IFSRLK-RAGIKPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTV 115

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV + M+  +C  D+ T N++ID YG+     + +++F S+
Sbjct: 116 SYSTLLTMYVENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSM 175

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG     
Sbjct: 176 RKVGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEH 235

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + GV  D   Y+ +
Sbjct: 236 EKANNLIQEMHNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTM 295

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  +++   +P
Sbjct: 296 IVAYERAGLVAHAKRLLHELKRPDNIP 322



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 109/217 (50%)

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
           E  L+PD YTY+ ++  +GK G+  +  S L +M+ ++   D++ ++ LI+   K   + 
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           K   +F  L  +  KP L  +NSMI  +GKA+L  +A  +  +M      P  ++Y  ++
Sbjct: 62  KAISIFSRLKRAGIKPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLL 121

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
           TMY        A  +F E+ ++   + ++T N M++ Y    +  EAD LF +   +G+ 
Sbjct: 122 TMYVENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIE 181

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQN 218



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/350 (20%), Positives = 146/350 (41%), Gaps = 36/350 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I V GK    R A  L SEMR +G  PD   Y+ L+T ++      +   +A
Sbjct: 78  DLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYVEN----QKFLEA 133

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ +YN ++ 
Sbjct: 134 LSVFAEMREI-KCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVSYNTLLR 192

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YG   +  E   +   M+    + +++T+N ++  YGK    +K   + + + +   +P
Sbjct: 193 VYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNRGIEP 252

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T++++I  +GK     +A  +FQK+ +       + Y+ +I  Y     V+ A+ + 
Sbjct: 253 NAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYERAGLVAHAKRLL 312

Query: 250 DELSK-------------------------------LGKDMKVSTLNAMLEAYCMNGLPT 278
            EL +                                G+   ++    M++ +       
Sbjct: 313 HELKRPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIDLFSKYKKYP 372

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
               +FE    +G   DS+   L+  AY K +  +    +   M+  G V
Sbjct: 373 NVVEVFEKMRGLGYFSDSNVISLVLNAYGKLHEFDKANDMYMGMQDEGCV 422


>gi|410110067|gb|AFV61113.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           herrerae]
          Length = 433

 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 138/297 (46%), Gaps = 5/297 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YNA+I        KAK   +
Sbjct: 45  GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVF----GKAKLFRE 100

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +MK      PN  +Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 101 ARALISEMK-TAGVMPNTASYSTLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMI 159

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +     +
Sbjct: 160 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIE 219

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSM++ YGK     KA  + Q+M      P+ ITY  II+++G    + RA  +
Sbjct: 220 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAML 279

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           F +L   G ++       M+ AY   GL   A  L     +    P  +   +L  A
Sbjct: 280 FQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKSPDNIPRDTAIHILAGA 336



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 153/327 (46%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 4   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 63

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +  AL  E+  + + P+  
Sbjct: 64  SKAIS----IFSRLK-RSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTA 118

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +
Sbjct: 119 SYSTLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 178

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG     
Sbjct: 179 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 238

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + GV  D   Y+ +
Sbjct: 239 EKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTM 298

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  ++    +P
Sbjct: 299 IVAYERAGLVAHAKRLLHELKSPDNIP 325



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 137/292 (46%), Gaps = 5/292 (1%)

Query: 36  EMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95
           EMR     PD   Y+ LIT H     K      AL + QKM+  +R   ++V Y+ L+  
Sbjct: 2   EMRERALSPDRYTYSTLIT-HF---GKEGLFDAALSWLQKME-QDRVPGDLVLYSNLIEL 56

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
             +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  +++S MK+    P+
Sbjct: 57  SRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPN 116

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
             +++ L+  Y + + F +   VF  +   K    L T N MI  YG+  +  +A+ +F 
Sbjct: 117 TASYSTLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFW 176

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T N+M+  Y    
Sbjct: 177 GMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTL 236

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
              +A+ L +   N G+ P+S TY  +   + K    +    L +++  +G+
Sbjct: 237 EHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGV 288



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 109/220 (49%)

Query: 111 ELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170
           E+ E  L+PD YTY+ ++  +GK G+     S L +M+ ++   D++ ++ LI+   K  
Sbjct: 2   EMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 61

Query: 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
            + K   +F  L  S   P L  +N+MI  +GKA+L  +A  +  +M      P+  +Y 
Sbjct: 62  DYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYS 121

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
            ++TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF     M
Sbjct: 122 TLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 181

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           G+ P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 182 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 221



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 152/360 (42%), Gaps = 42/360 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  ++ D   Y+ +I V GK    R A  L SEM+ +G  P+ + Y+ L+T ++     
Sbjct: 74  KRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLLTMYVEN--- 130

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 131 -KKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 189

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 190 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 249

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           +   +P+ IT++ +I  +GK    D+   +F+ L  S  +     + +MI+ Y +A L  
Sbjct: 250 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVA 309

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++     +P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 310 HAKRLLHELK----SPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMI 365

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             +           +F+    +G  PDS+   L+  AY K +  +    +   M++ G +
Sbjct: 366 HLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHELDKANDVYMEMQEVGCI 425


>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 154/346 (44%), Gaps = 16/346 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K + +  D   Y+ +++ M  +G+   A  +  EM+  G  PD   YN LI    +  D 
Sbjct: 288 KSKGFQPDLQTYNPILSWMCNEGR---ASEVLREMKGIGLVPDSVSYNILIRGCSNNGD- 343

Query: 63  AKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
              L  A  Y  +M  +GM    P   TYN L+        ++    L +E+ E  +  D
Sbjct: 344 ---LETAFAYRDEMVKQGM---VPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLD 397

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TYN V++ Y ++G  K+  ++   M ++  KP   T+  LI    +R    + +++F+
Sbjct: 398 SVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFE 457

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++    KP L   N+++  +       +A  + ++M  M   P  +TY C+  M G C 
Sbjct: 458 KVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCL--MRGLCG 515

Query: 241 N--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
                 ARE+  E+ + G      + N ++  Y   G    A ++ +   ++G  P   T
Sbjct: 516 EGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFIVRDEMLSLGFNPTLLT 575

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           Y  L K  +K    EL ++LL+ M+  GIVPN   F   +E  S S
Sbjct: 576 YNALLKGLSKNQDGELAEELLREMKSEGIVPNDSSFCSVIEAMSKS 621



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 107/242 (44%), Gaps = 11/242 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH---T 59
           +++  + D+  Y+ +I    + G  + A  L  EM   G +P    Y +LI        T
Sbjct: 390 REKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKT 449

Query: 60  RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
           R+  +   K +G     KGM   KP++V  N L+       N+D+  +L KE+    + P
Sbjct: 450 READELFEKVVG-----KGM---KPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDP 501

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D  TYN +M      G  +E   ++  MK    KPD I++N LI  Y K+        V 
Sbjct: 502 DDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFIVR 561

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             ++     PTL T+N+++    K +    AE + ++M +    P+  ++  +I      
Sbjct: 562 DEMLSLGFNPTLLTYNALLKGLSKNQDGELAEELLREMKSEGIVPNDSSFCSVIEAMSKS 621

Query: 240 DN 241
           DN
Sbjct: 622 DN 623



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/330 (20%), Positives = 133/330 (40%), Gaps = 22/330 (6%)

Query: 18  IAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL----------- 66
           IAV+ K    +    L  E+ ++       +++ L+ AH   + K+  L           
Sbjct: 110 IAVVSKLSSPKSVTQLLKEVVSTRKNSVRDLFDELVLAHDRLQTKSTILFDFMVRFYCQL 169

Query: 67  -----AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
                A    Y  K KG +   P   T N +L   ++   ++     + +++   +  ++
Sbjct: 170 RMVDEAIECFYLMKEKGFD---PKTETCNHILSLLSRLNRIENAWVFYADMYRMEIKSNV 226

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           YT+N +++   K G +K+ +  L  M+S   KP I+T+N L+  Y  R   +    +   
Sbjct: 227 YTFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGRIEGARMIISE 286

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           +     +P L T+N ++        +G+A  V ++M  +   P  ++Y  +I       +
Sbjct: 287 MKSKGFQPDLQTYNPILSWMCN---EGRASEVLREMKGIGLVPDSVSYNILIRGCSNNGD 343

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +  A    DE+ K G      T N ++    M      A++L       G+  DS TY +
Sbjct: 344 LETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNI 403

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           +   Y +    +    L   M  +GI P +
Sbjct: 404 VINGYCQHGDAKKAFALHDEMMTDGIKPTQ 433


>gi|357159149|ref|XP_003578355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Brachypodium distachyon]
          Length = 857

 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 143/324 (44%), Gaps = 41/324 (12%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D   Y  LI +  K G   +AM L+  M+  G  PD   Y+A++        K   L
Sbjct: 430 YEPDRVTYCTLIDIHAKAGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNC----LGKGGQL 485

Query: 67  AKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           A A   F +M  +E  C PN+VTYNI++   A+ARN D V  L++++  +   PD  TY+
Sbjct: 486 AAAYKLFCEM--IENGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQVAGFRPDKITYS 543

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            VM+  G  G + E E+V   M+ +   PD   + LL+D +GK    DK    + +++  
Sbjct: 544 IVMEVLGHCGHLDEAEAVFIEMRRDWA-PDEPVYGLLVDLWGKAGNVDKALGWYHAMLQD 602

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT-------MYGY 238
             +P +PT NS++  + K      A  V Q M A    PS  TY  +++         G 
Sbjct: 603 GLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLLSCCTDAHAQMGL 662

Query: 239 C-------------------------DNV-SRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           C                         +NV    R   D +    ++ K   ++A+++   
Sbjct: 663 CCQLMAITGHPAHMFLLYLPDAEPGGENVRDHTRYFLDMMHSEDRESKRGLMDAVIDFLH 722

Query: 273 MNGLPTEADLLFENSHNMGVTPDS 296
            +GL  EA  ++E +    V PDS
Sbjct: 723 KSGLKEEAGFIWEVAAQKNVYPDS 746



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 151/314 (48%), Gaps = 10/314 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q  +  D   Y+ +I ++G+  Q  +   L  EM    C+P    YN +I    H  
Sbjct: 354 LKRQPGFKHDGHTYTTMIGILGQARQFGIMRNLLHEMNRDRCKPTVVTYNRII----HAY 409

Query: 61  DKAKALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
            +A  L +A+  F++M+  G E   P+ VTY  L+   A+A  ++    L+  + E  L+
Sbjct: 410 GRANYLREAVKVFEEMEEAGYE---PDRVTYCTLIDIHAKAGYLEVAMDLYGRMQEVGLS 466

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD +TY+ +++  GK G +     +   M  N C P+++T+N++I    K + +D + ++
Sbjct: 467 PDTFTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIIIALQAKARNYDNVVKL 526

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           ++ +  +  +P   T++ ++   G      +AE VF +M    + P    Y  ++ ++G 
Sbjct: 527 YRDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMR-RDWAPDEPVYGLLVDLWGK 585

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             NV +A   +  + + G    V T N++L A+       +A  + +N    G+ P   T
Sbjct: 586 AGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQT 645

Query: 299 YKLLYKAYTKANMK 312
           Y LL    T A+ +
Sbjct: 646 YTLLLSCCTDAHAQ 659



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 120/252 (47%), Gaps = 3/252 (1%)

Query: 80  ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
           +RCKP +VTYN ++ A  +A  + +   +F+E+ E+   PD  TY  ++D + K G ++ 
Sbjct: 393 DRCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEEAGYEPDRVTYCTLIDIHAKAGYLEV 452

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
              +  RM+     PD  T++ +++  GK        ++F  ++ +   P L T+N +I 
Sbjct: 453 AMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIIIA 512

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK-LGKD 258
              KAR       +++ M    + P  ITY  ++ + G+C ++  A  +F E+ +    D
Sbjct: 513 LQAKARNYDNVVKLYRDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRRDWAPD 572

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
             V  L  +++ +   G   +A   +      G+ P+  T   L  A+ K N  +    +
Sbjct: 573 EPVYGL--LVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSV 630

Query: 319 LKRMEQNGIVPN 330
           L+ M   G+VP+
Sbjct: 631 LQNMLAQGLVPS 642



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 118/269 (43%), Gaps = 15/269 (5%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           ALG+F  +K     K +  TY  ++    QAR    +  L  E++     P + TYN ++
Sbjct: 347 ALGFFHWLKRQPGFKHDGHTYTTMIGILGQARQFGIMRNLLHEMNRDRCKPTVVTYNRII 406

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            AYG+   ++E   V   M+    +PD +T+  LID + K    +    ++  +      
Sbjct: 407 HAYGRANYLREAVKVFEEMEEAGYEPDRVTYCTLIDIHAKAGYLEVAMDLYGRMQEVGLS 466

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   T+++M+   GK      A  +F +M     TP+ +TY  II +       ++AR  
Sbjct: 467 PDTFTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIIIALQ------AKARN- 519

Query: 249 FDELSKLGKDMKVS-------TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +D + KL +DM+V+       T + ++E     G   EA+ +F         PD   Y L
Sbjct: 520 YDNVVKLYRDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRR-DWAPDEPVYGL 578

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           L   + KA   +        M Q+G+ PN
Sbjct: 579 LVDLWGKAGNVDKALGWYHAMLQDGLQPN 607



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 85/189 (44%)

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           K D  T+  +I   G+ + F  M  +   +   + KPT+ T+N +I  YG+A    +A  
Sbjct: 361 KHDGHTYTTMIGILGQARQFGIMRNLLHEMNRDRCKPTVVTYNRIIHAYGRANYLREAVK 420

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           VF++M    Y P  +TY  +I ++     +  A +++  + ++G      T +AM+    
Sbjct: 421 VFEEMEEAGYEPDRVTYCTLIDIHAKAGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLG 480

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             G    A  LF      G TP+  TY ++     KA   + V KL + M+  G  P+K 
Sbjct: 481 KGGQLAAAYKLFCEMIENGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQVAGFRPDKI 540

Query: 333 FFLEALETF 341
            +   +E  
Sbjct: 541 TYSIVMEVL 549


>gi|302792409|ref|XP_002977970.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
 gi|300153991|gb|EFJ20627.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
          Length = 695

 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 153/344 (44%), Gaps = 42/344 (12%)

Query: 37  MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 96
           M  +G  P+  +YN LI+       KA  LA+A  Y ++M   + C PN+V+YNI++   
Sbjct: 1   MLEAGLFPNAILYNNLISCLC----KAGMLAEAESYLKRMP--QHCAPNVVSYNIIIDGY 54

Query: 97  AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
            +ARN+++  A  +E+ E    P  + Y+ ++ ++ K G + +   V + M +  C+PDI
Sbjct: 55  CKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDI 114

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           + FN+L+    + +   +  ++F+S+     KP + T+N+MI    K +   +A ++ ++
Sbjct: 115 VNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLER 174

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS----------------KLGKDMK 260
           M     +P+F+TY  +I        + +A E+F++++                KL +  K
Sbjct: 175 MKQEDVSPTFVTYTTLIDHLCKFTRLQQAYEVFEKMAEGPCACTEPAYSVLFNKLQRAGK 234

Query: 261 VSTLNAMLEAYC--------------------MNGLPTEADLLFENSHNMGVTPDSSTYK 300
           +   + +    C                    M+G   EA  L        + PD   Y 
Sbjct: 235 LVEASRVYSDMCRKNVCMTDNTYSLVVLGLSKMDGGNVEAAKLVTEMMGKKIAPDFYAYS 294

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           +L     KA      +++ + M   GI P    +   LE   S+
Sbjct: 295 ILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLST 338



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 157/371 (42%), Gaps = 45/371 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS ++    K G    AM +F+EM   GC PD   +N L++       +A+ + +A   F
Sbjct: 82  YSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLW----RARKIHEARELF 137

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD---- 129
           + M     CKP++VTYN ++    + + +D+   L + + +  ++P   TY  ++D    
Sbjct: 138 RSMNS-RGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCK 196

Query: 130 --------------AYGKNGMIKEMESVL-------------SRMKSNQCKPDII----T 158
                         A G     +   SVL             SR+ S+ C+ ++     T
Sbjct: 197 FTRLQQAYEVFEKMAEGPCACTEPAYSVLFNKLQRAGKLVEASRVYSDMCRKNVCMTDNT 256

Query: 159 FNLLIDSYGKRQAFD-KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           ++L++    K    + +  ++   +M  K  P    ++ +I    KAR  G+A+ +FQ+M
Sbjct: 257 YSLVVLGLSKMDGGNVEAAKLVTEMMGKKIAPDFYAYSILINGLCKARRPGEAKEMFQEM 316

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
                +P+ +TY  ++        +  A E+   +   G+     + N M+  +C NG  
Sbjct: 317 RGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQGRLPDTCSYNLMIRGFCANGDT 376

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME--QNGIVPNKRFFL 335
            EA  LF++    G+  ++ TY  +   + K         L KRM+  +N  VP    F 
Sbjct: 377 NEAYCLFQDMIKDGIVLNTWTYNFMIVGFIKDEAWSSAWMLFKRMQSGKNDKVPAPNMF- 435

Query: 336 EALETFSSSLA 346
              E   SSL 
Sbjct: 436 -TYEILISSLC 445



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 135/337 (40%), Gaps = 41/337 (12%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+    EM   G  P P  Y++++ +   T +    ++KA+  F +M   + C+P+IV +
Sbjct: 63  ALAFLREMEELGHPPTPHAYSSIVQSFCKTGN----VSKAMDVFAEMPA-KGCEPDIVNF 117

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           N+LL    +AR + +   LF+ ++     PD+ TYN ++    K   + E   +L RMK 
Sbjct: 118 NVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQ 177

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM------------ 197
               P  +T+  LID   K     +  +VF+ +       T P ++ +            
Sbjct: 178 EDVSPTFVTYTTLIDHLCKFTRLQQAYEVFEKMAEGPCACTEPAYSVLFNKLQRAGKLVE 237

Query: 198 ---------------------IINYGKARLQG---KAEYVFQKMTAMKYTPSFITYECII 233
                                ++  G +++ G   +A  +  +M   K  P F  Y  +I
Sbjct: 238 ASRVYSDMCRKNVCMTDNTYSLVVLGLSKMDGGNVEAAKLVTEMMGKKIAPDFYAYSILI 297

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
                      A+E+F E+   G    V T N +LE         +A  L     + G  
Sbjct: 298 NGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQGRL 357

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           PD+ +Y L+ + +           L + M ++GIV N
Sbjct: 358 PDTCSYNLMIRGFCANGDTNEAYCLFQDMIKDGIVLN 394



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 133/308 (43%), Gaps = 17/308 (5%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           L +EM      PD   Y+ LI        KA+   +A   FQ+M+G     P +VTYN L
Sbjct: 277 LVTEMMGKKIAPDFYAYSILINGLC----KARRPGEAKEMFQEMRG-RGISPTVVTYNTL 331

Query: 93  LRAC-AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151
           L    + A+  D +   +  L +  L PD  +YN ++  +  NG   E   +   M  + 
Sbjct: 332 LEGLLSTAKLQDAMELTYFMLDQGRL-PDTCSYNLMIRGFCANGDTNEAYCLFQDMIKDG 390

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK----PTLPTFNSMIINYGKARLQ 207
              +  T+N +I  + K +A+     +FK +   K      P + T+  +I +  K    
Sbjct: 391 IVLNTWTYNFMIVGFIKDEAWSSAWMLFKRMQSGKNDKVPAPNMFTYEILISSLCKT--- 447

Query: 208 GKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
            + E  F+ ++AM+   + PS   +E +++       +  A E++ E+S++     V + 
Sbjct: 448 DQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSS 507

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N +L+     G   EA    +   + G+ PD  TY  L          +  +KL++ + +
Sbjct: 508 NILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVR 567

Query: 325 NGIVPNKR 332
           +G  P  +
Sbjct: 568 DGKRPENQ 575



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 152/385 (39%), Gaps = 78/385 (20%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI  + K  +   A  +F EMR  G  P    YN L+   L T     A+   L YF
Sbjct: 293 YSILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAME--LTYF 350

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
              +G     P+  +YN+++R      + ++   LF+++ +  +  + +TYN ++  + K
Sbjct: 351 MLDQGR---LPDTCSYNLMIRGFCANGDTNEAYCLFQDMIKDGIVLNTWTYNFMIVGFIK 407

Query: 134 NGMIKEMESVLSRMKSNQ----CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK- 188
           +        +  RM+S +      P++ T+ +LI S  K    D++E+ FK L   ++K 
Sbjct: 408 DEAWSSAWMLFKRMQSGKNDKVPAPNMFTYEILISSLCKT---DQVEEAFKLLSAMRDKG 464

Query: 189 --PTLPTFNSMIINYGKA-------------------RLQG----------------KAE 211
             P+L  +  ++    +A                   +L G                +A+
Sbjct: 465 FVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAK 524

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
              ++MT     P   TY+ ++    +     +AR++ +EL + GK  +   L  +L A 
Sbjct: 525 DFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVRDGKRPENQGLRQLLGAL 584

Query: 272 CMNG-----------LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           C  G           LP+    +    HN  VT      KL Y               L 
Sbjct: 585 CAQGDFQGAYEFYCWLPSVGVEVTLGMHNTLVTSCCLARKLDY---------------LD 629

Query: 321 RMEQNGIVPNKRFFLEALETFSSSL 345
            +EQ   VP+    +E +E F + L
Sbjct: 630 MIEQREGVPD--VIVERIEKFRAEL 652


>gi|414868449|tpg|DAA47006.1| TPA: hypothetical protein ZEAMMB73_127498 [Zea mays]
          Length = 870

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 154/348 (44%), Gaps = 51/348 (14%)

Query: 10  DTGI----------YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT 59
           DTGI          +S LI+   + G    AM +   M+ +G RP    YNA+I A    
Sbjct: 233 DTGIAGSYGNTVFAHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDA---C 289

Query: 60  RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
                 L   LGYF++M     C P+  T+N LL AC++A +++    +F E+       
Sbjct: 290 GKGGVDLRFTLGYFRQMLQDGLC-PDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGR 348

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD---KME 176
           DIYTYN  +DA  K G +     V+  M++N  KP+++T++ L+D + K + +D   K+ 
Sbjct: 349 DIYTYNTFVDAICKCGNMGLALQVVLDMEANNAKPNVVTYSTLMDGFSKLEKYDEALKLR 408

Query: 177 QVFKSL--------------MHSK-------------------EKPTLPTFNSMIINYGK 203
           +  KSL              ++ K                   EK T+ T+NS+I  YGK
Sbjct: 409 EKMKSLRIQLDRVCYNTLLAIYVKTGKYDEIATVCEEMEKLGIEKDTV-TYNSLINGYGK 467

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
                   ++ Q M A    PS +TY  +I +Y        A  ++ +  + G    V  
Sbjct: 468 QGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVL 527

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
            ++ ++    NGL   A  L +    MG+ P+  TY  +  A+ K+ +
Sbjct: 528 FSSFIDTLAKNGLVECALSLLDEMMKMGIKPNVVTYNTIIDAFGKSKI 575



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 142/336 (42%), Gaps = 25/336 (7%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ L+A   + G    A  +F EM + G   D   YN  + A     +   AL   
Sbjct: 314 DRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICKCGNMGLAL--- 370

Query: 70  LGYFQKMKGME--RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
               Q +  ME    KPN+VTY+ L+   ++    D+   L +++    +  D   YN +
Sbjct: 371 ----QVVLDMEANNAKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLRIQLDRVCYNTL 426

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  Y K G   E+ +V   M+    + D +T+N LI+ YGK+   D +  + + +     
Sbjct: 427 LAIYVKTGKYDEIATVCEEMEKLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQGV 486

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P++ T++++I  Y KA + G A  V+            + +   I        V  A  
Sbjct: 487 APSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGLVECALS 546

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY---- 303
           + DE+ K+G    V T N +++A+  + + TE D    +  +MG+        +      
Sbjct: 547 LLDEMMKMGIKPNVVTYNTIIDAFGKSKIFTEED---SDIGDMGIVGVYGGQVVRVTNPV 603

Query: 304 ----KAYTKANMKE-----LVQKLLKRMEQNGIVPN 330
               ++ T   M+       + +L ++M Q G+ PN
Sbjct: 604 IRGGRSATDVRMRRSQELFFILELFQKMVQQGVRPN 639



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 126/309 (40%), Gaps = 13/309 (4%)

Query: 49  YNALITAHLHTRDKAKALAKALGYFQKM-----------KGMERCKPNIV-TYNILLRAC 96
           Y AL        DK K L  A+G   KM            G+     N V  ++ L+ A 
Sbjct: 195 YAALPLVGGGAVDKGKLLTAAIGALGKMGRPDLARRAFDTGIAGSYGNTVFAHSALISAY 254

Query: 97  AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-IKEMESVLSRMKSNQCKPD 155
           A++    +   + + +  + L P   +YN V+DA GK G+ ++       +M  +   PD
Sbjct: 255 ARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLQDGLCPD 314

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
             TFN L+ +  +    +    VF  ++H      + T+N+ +    K    G A  V  
Sbjct: 315 RKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICKCGNMGLALQVVL 374

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            M A    P+ +TY  ++  +   +    A ++ +++  L   +     N +L  Y   G
Sbjct: 375 DMEANNAKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLRIQLDRVCYNTLLAIYVKTG 434

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335
              E   + E    +G+  D+ TY  L   Y K    ++V  L++ M   G+ P+   + 
Sbjct: 435 KYDEIATVCEEMEKLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQGVAPSVLTYS 494

Query: 336 EALETFSSS 344
             ++ +S +
Sbjct: 495 TLIDIYSKA 503



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 105/253 (41%), Gaps = 50/253 (19%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  Y+ LI   GK+G+  +  +L  +MR  G  P    Y+ LI  +      +KA    
Sbjct: 454 DTVTYNSLINGYGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIY------SKA---- 503

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                   GM                   A NV      + +  ES L  D+  ++  +D
Sbjct: 504 --------GMH----------------GDAFNV------YLDFKESGLKADVVLFSSFID 533

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL-MHSKEK 188
              KNG+++   S+L  M     KP+++T+N +ID++GK + F + +     + +     
Sbjct: 534 TLAKNGLVECALSLLDEMMKMGIKPNVVTYNTIIDAFGKSKIFTEEDSDIGDMGIVGVYG 593

Query: 189 PTLPTFNSMIINYGKA----RLQGKAEY-----VFQKMTAMKYTPSFITYECIITMYGYC 239
             +    + +I  G++    R++   E      +FQKM      P+ +T+  I+     C
Sbjct: 594 GQVVRVTNPVIRGGRSATDVRMRRSQELFFILELFQKMVQQGVRPNVVTFSAILNACSRC 653

Query: 240 DNVSRAREIFDEL 252
           ++   A  + ++L
Sbjct: 654 NSFEDAALLLEQL 666


>gi|410110131|gb|AFV61145.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rehmannii]
          Length = 379

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 141/294 (47%), Gaps = 6/294 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YNA+I        KAK   +
Sbjct: 3   GDLVLYSNLIELSRKLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFRE 58

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +MK      PN  +Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 59  ARSLIGEMK-TAGVMPNTSSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMI 117

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +     +
Sbjct: 118 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIE 177

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSM++ YGK     KA  + Q+M +    P+ ITY  II+++G    + RA  +
Sbjct: 178 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAML 237

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKL 301
           F +L   G ++       M+ AY   GL   A  LL E      +  D++ + L
Sbjct: 238 FQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHIL 291



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 130/263 (49%), Gaps = 1/263 (0%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +KA+  F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  +Y+ 
Sbjct: 22  SKAIAIFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTSSYST 80

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +    
Sbjct: 81  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG      +A 
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G +    T + ++  +   G    A +LF+   + GV  D   ++ +  AY
Sbjct: 201 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 260

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            +A +    ++LL  +++   +P
Sbjct: 261 ERAGLVAHAKRLLHELKRPDNIP 283



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 147/323 (45%), Gaps = 19/323 (5%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L  EM+ +G  P+ S Y+ L+T ++     
Sbjct: 32  KRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTSSYSTLLTMYVEN--- 88

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   +AL  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ 
Sbjct: 89  -KKFLEALSVFSEMREI-KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 146

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++  YG   +  E   +   M+    + +++T+N ++  YGK    +K   + + +
Sbjct: 147 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 206

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P   T++++I  +GK     +A  +FQK+ +       I ++ +I  Y     V
Sbjct: 207 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLV 266

Query: 243 SRAREIFDELSK---LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           + A+ +  EL +   + +D  +  L          G   EA  +F  + + G   D + +
Sbjct: 267 AHAKRLLHELKRPDNIPRDTAIHILAGA-------GRIEEATYVFRQAIDAGEVKDITVF 319

Query: 300 K----LLYKAYTKANMKELVQKL 318
           +    LL K    AN+ E+  K+
Sbjct: 320 ERMIHLLSKYKKYANVVEVFDKM 342



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 118/250 (47%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           ++V Y+ L+    +  +  +  A+F  L  S   PD+  YN +++ +GK  + +E  S++
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             MK+    P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+ 
Sbjct: 64  GEMKTAGVMPNTSSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
            +  +A+ +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T 
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N+M+  Y       +A+ L +   + G+ P+S TY  +   + K    +    L +++  
Sbjct: 184 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 243

Query: 325 NGIVPNKRFF 334
           +G+  ++  F
Sbjct: 244 SGVEIDQILF 253



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 112/269 (41%), Gaps = 36/269 (13%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           +I V G+ G  + A  LF  MR  G  P+   YN L+  +      A+   +A+  F+ M
Sbjct: 116 MIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY----GDAELFGEAIHLFRLM 171

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +  +  + N+VTYN ++    +    ++ N L +E+    + P+  TY+ ++  +GK G 
Sbjct: 172 Q-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGK 230

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSY--------GKRQAFD--------------- 173
           +     +  +++S+  + D I F  +I +Y         KR   +               
Sbjct: 231 LDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHI 290

Query: 174 -----KMEQ---VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
                ++E+   VF+  + + E   +  F  MI    K +       VF KM  + Y P 
Sbjct: 291 LAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPD 350

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSK 254
                 ++  YG      +A +++ E+ +
Sbjct: 351 SNVIAVVLNAYGKLQXFDKANDVYMEMQE 379



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 79/166 (47%), Gaps = 9/166 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I++ GK G+   A  LF ++R+SG   D  ++  +I A+    ++A  +A A    
Sbjct: 218 YSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY----ERAGLVAHAKRLL 273

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++K     +P+ +  +  +   A A  +++   +F++  ++    DI  +  ++    K
Sbjct: 274 HELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSK 328

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
                 +  V  +M+     PD     +++++YGK Q FDK   V+
Sbjct: 329 YKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQXFDKANDVY 374


>gi|242083798|ref|XP_002442324.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
 gi|241943017|gb|EES16162.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
          Length = 647

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 151/334 (45%), Gaps = 41/334 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +S LI+   + G    AM +   M+ +G RP    YNA+I A          L   LGYF
Sbjct: 26  HSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDA---CGKGGVDLRFTLGYF 82

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M     C P+  T+N LL AC++A +++    +F E+       DIYTYN  +DA  K
Sbjct: 83  RQMLQDGLC-PDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICK 141

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD---KMEQVFKSL-------- 182
            G ++    V+  M++N  KP+++T++ L+D + K + +D   K+ +  KSL        
Sbjct: 142 CGNMELATQVVLDMEANNIKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLGIQLDRVC 201

Query: 183 ------MHSK-------------------EKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
                 ++ K                   EK T+ T+NS+I  YGK        ++ Q M
Sbjct: 202 YNTLLAIYVKTGKYDEIATVCEDMENLGIEKDTV-TYNSLINGYGKQGRLDMVAFLVQDM 260

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
            A    PS +TY  +I +Y        A  ++ +  + G    V   ++ ++    NGL 
Sbjct: 261 RAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGLV 320

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
             A  L +    MG+ P+  TY  +  A+ K+ +
Sbjct: 321 ECALSLLDEMIKMGIKPNVVTYNTIIDAFGKSKI 354



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 144/340 (42%), Gaps = 27/340 (7%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ L+A   + G    A  +F EM + G   D   YN  + A     +   A    
Sbjct: 93  DRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICKCGNMELAT--- 149

Query: 70  LGYFQKMKGME--RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
               Q +  ME    KPN+VTY+ L+   ++    D+   L +++    +  D   YN +
Sbjct: 150 ----QVVLDMEANNIKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLGIQLDRVCYNTL 205

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  Y K G   E+ +V   M++   + D +T+N LI+ YGK+   D +  + + +     
Sbjct: 206 LAIYVKTGKYDEIATVCEDMENLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQGV 265

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P++ T++++I  Y KA + G A  V+            + +   I        V  A  
Sbjct: 266 APSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGLVECALS 325

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP--------DSSTY 299
           + DE+ K+G    V T N +++A+  + + TE     E+  NMG+           ++  
Sbjct: 326 LLDEMIKMGIKPNVVTYNTIIDAFGKSKILTE-----EDPGNMGIVGVYGGQIVRATNPV 380

Query: 300 KLLYKAYTKANMKE-----LVQKLLKRMEQNGIVPNKRFF 334
               ++ T   M+       + +L ++M Q G+ PN   F
Sbjct: 381 TRGGRSATDVRMRRSQELFFILELFQKMVQQGVRPNVVTF 420



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 133/296 (44%), Gaps = 8/296 (2%)

Query: 49  YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL 108
           ++ALI+A+     ++    +A+G  + MKG    +P  V+YN ++ AC +   VD    L
Sbjct: 26  HSALISAYA----RSGLATEAMGVLESMKG-AGLRPTTVSYNAVIDACGKG-GVDLRFTL 79

Query: 109 --FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
             F+++ +  L PD  T+N ++ A  + G +++  +V   M       DI T+N  +D+ 
Sbjct: 80  GYFRQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVDAI 139

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
            K    +   QV   +  +  KP + T+++++  + K     +A  + +KM ++      
Sbjct: 140 CKCGNMELATQVVLDMEANNIKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLGIQLDR 199

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           + Y  ++ +Y           + +++  LG +    T N+++  Y   G       L ++
Sbjct: 200 VCYNTLLAIYVKTGKYDEIATVCEDMENLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQD 259

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
               GV P   TY  L   Y+KA M      +    +++G+  +   F   ++T +
Sbjct: 260 MRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLA 315



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 115/266 (43%), Gaps = 1/266 (0%)

Query: 80  ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-IK 138
           +R    +  ++ L+ A A++    +   + + +  + L P   +YN V+DA GK G+ ++
Sbjct: 17  DRYGNTVFAHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLR 76

Query: 139 EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 198
                  +M  +   PD  TFN L+ +  +    +    VF  ++H      + T+N+ +
Sbjct: 77  FTLGYFRQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFV 136

Query: 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 258
               K      A  V   M A    P+ +TY  ++  +   +    A ++ +++  LG  
Sbjct: 137 DAICKCGNMELATQVVLDMEANNIKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLGIQ 196

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
           +     N +L  Y   G   E   + E+  N+G+  D+ TY  L   Y K    ++V  L
Sbjct: 197 LDRVCYNTLLAIYVKTGKYDEIATVCEDMENLGIEKDTVTYNSLINGYGKQGRLDMVAFL 256

Query: 319 LKRMEQNGIVPNKRFFLEALETFSSS 344
           ++ M   G+ P+   +   ++ +S +
Sbjct: 257 VQDMRAQGVAPSVLTYSTLIDIYSKA 282



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 127/313 (40%), Gaps = 34/313 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+A+  K G+      +  +M N G   D   YN+LI  +     K   L   
Sbjct: 198 DRVCYNTLLAIYVKTGKYDEIATVCEDMENLGIEKDTVTYNSLINGY----GKQGRLDMV 253

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               Q M+  +   P+++TY+ L+   ++A        ++ +  ES L  D+  ++  +D
Sbjct: 254 AFLVQDMRA-QGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFID 312

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME-------QVFKSL 182
              KNG+++   S+L  M     KP+++T+N +ID++GK +   + +        V+   
Sbjct: 313 TLAKNGLVECALSLLDEMIKMGIKPNVVTYNTIIDAFGKSKILTEEDPGNMGIVGVYGGQ 372

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEY-----VFQKMTAMKYTPSFITYECIITMYG 237
           +     P      S        R++   E      +FQKM      P+ +T+  I+    
Sbjct: 373 IVRATNPVTRGGRSAT----DVRMRRSQELFFILELFQKMVQQGVRPNVVTFSAILNACS 428

Query: 238 YCDNVSRAREIFDELSKLGKD---MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
            C+N   A  + ++L         +    L   LEA+      ++A  LF     M    
Sbjct: 429 RCNNFEDAALLLEQLRLFDNSVYGVAYGLLMGHLEAW------SQARSLFNQLGRM---- 478

Query: 295 DSSTYKLLYKAYT 307
           DS T    Y A T
Sbjct: 479 DSPTSSAFYNALT 491



 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 40/143 (27%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-----LHTRD-- 61
           AD  ++S  I  + K G    A+ L  EM   G +P+   YN +I A      L   D  
Sbjct: 302 ADVVLFSSFIDTLAKNGLVECALSLLDEMIKMGIKPNVVTYNTIIDAFGKSKILTEEDPG 361

Query: 62  --------------------------------KAKALAKALGYFQKMKGMERCKPNIVTY 89
                                           +++ L   L  FQKM   +  +PN+VT+
Sbjct: 362 NMGIVGVYGGQIVRATNPVTRGGRSATDVRMRRSQELFFILELFQKMV-QQGVRPNVVTF 420

Query: 90  NILLRACAQARNVDQVNALFKEL 112
           + +L AC++  N +    L ++L
Sbjct: 421 SAILNACSRCNNFEDAALLLEQL 443


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 151/340 (44%), Gaps = 24/340 (7%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+ Q+    DT  Y+ LI    K G+      LF EM   G  P+    N L+     T 
Sbjct: 409 MRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRT- 467

Query: 61  DKAKALAKALGYF--QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
                ++ A+ +F   + +GM   K + VTY  L+ A     N ++   LF E+ +S  +
Sbjct: 468 ---GRVSSAVNFFVEAQRRGM---KGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCS 521

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD   Y  ++  + + G + +   VL+ +K    +PD + +N LI  + +   F ++ ++
Sbjct: 522 PDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEM 581

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
            K +  +  KP   T+N++I    K      A+ V +KM      P+  TY  +I  Y  
Sbjct: 582 LKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCL 641

Query: 239 CDNVSRAREIFDELSKLGKDMKVST--------LNAMLEAYCMNGLPTEADLLFENSHNM 290
             N + A EIF       KDMK ++         N ++ + C N     A  L E+    
Sbjct: 642 NGNGNEAMEIF-------KDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIW 694

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           GVTP+++TY  ++K        E V + + RM ++   P+
Sbjct: 695 GVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPD 734



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 140/324 (43%), Gaps = 9/324 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-GCRPDPSVYNALITAHLHTRDKAKALAK 68
           D  IY+ LI  + K G+ +  + L   MR+  GC PD   YN LI        KA  + K
Sbjct: 382 DVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFC----KAGEIEK 437

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
               F +M   E   PN+VT N L+    +   V      F E     +  D  TY  ++
Sbjct: 438 GKELFDEMNK-EGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALI 496

Query: 129 DAYGK-NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +A+   N   K ME + + M  + C PD I +  LI  + +         V   L     
Sbjct: 497 NAFCNVNNFEKAME-LFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGI 555

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P    +N++I  + +     +   + ++M      P  ITY  +I       ++  A++
Sbjct: 556 RPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQK 615

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG-VTPDSSTYKLLYKAY 306
           +  ++ K G    V+T  A++ AYC+NG   EA  +F++      V P++  Y +L  + 
Sbjct: 616 VMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSL 675

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K N  +    L++ M+  G+ PN
Sbjct: 676 CKNNKVKSAVSLMEDMKIWGVTPN 699



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/352 (20%), Positives = 153/352 (43%), Gaps = 16/352 (4%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEM----RNSGCRPDPSVYNALITAHLHTRDKA 63
           + +T + +  ++++ + G+ + A+ +  EM     +S CRP+ +  + L +  L      
Sbjct: 187 VKNTYLRNVWLSILLRSGRVKDALKVIDEMFESNDDSNCRPNDATGDILFSFLLKRERNE 246

Query: 64  KALAK--ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           + L++   +    K         +     ++ R C + R  ++   LF E+ +     + 
Sbjct: 247 ELLSEDEIVNLVLKFGEHGVLISSFWMGRLITRLC-RNRKTNRGWDLFTEMIKLGAVLES 305

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
              N ++    + G    M  ++ +M     +P+++TF +LI+   K +  D   +V + 
Sbjct: 306 AACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEK 365

Query: 182 LMHSKE--------KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSFITYECI 232
           +   KE        +P +  +N++I    K   Q +   + ++M + K   P  ITY C+
Sbjct: 366 MSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCL 425

Query: 233 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV 292
           I  +     + + +E+FDE++K G    V T+N ++   C  G  + A   F  +   G+
Sbjct: 426 IDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGM 485

Query: 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             D+ TY  L  A+   N  E   +L   M ++G  P+   +   +  FS +
Sbjct: 486 KGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQA 537



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 109/244 (44%), Gaps = 16/244 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y  LI+   + G+   A ++ +E++  G RPD   YN LI     T    +     
Sbjct: 523 DAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRV---- 578

Query: 70  LGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F+ +K ME    KP+ +TYN L+   ++  ++     + +++ ++ + P + TY  V
Sbjct: 579 ---FEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAV 635

Query: 128 MDAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++AY  NG   E   +   MK+ ++  P+ + +N+LI+S  K         + + +    
Sbjct: 636 INAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWG 695

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM---KYTPSFITYECIITMYGYCDNVS 243
             P   T+N++   +   R +   E VF+ M  M      P +IT E +         + 
Sbjct: 696 VTPNTTTYNAI---FKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGEIE 752

Query: 244 RARE 247
           R ++
Sbjct: 753 RLKK 756


>gi|224144580|ref|XP_002325338.1| predicted protein [Populus trichocarpa]
 gi|222862213|gb|EEE99719.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 142/312 (45%), Gaps = 9/312 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI ++ K   T  A+ +  +M   GC PD   YN+L+  +  +++     A  + Y 
Sbjct: 165 YTILIELVWKHCGTVRALEVLEDMAIEGCYPDLVTYNSLV--NFASKEGKYEDAALIIYN 222

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
               GME   PN +TYN LL +       D+V+ +   + ++   P + TYN +++   K
Sbjct: 223 ILSHGME---PNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILINGLCK 279

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G+++   +   +M S  C PDIIT+N L+ +  K    D+  QVF  L  S   P L T
Sbjct: 280 CGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSNCSPGLIT 339

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N++I    +     +A  ++ +M      P  IT+  ++  + + D V  A EI  E+ 
Sbjct: 340 YNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQVEDAVEILREMG 399

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM-- 311
           K    +  S    ++   C N     A  + E   +    PD   Y  L K+   A M  
Sbjct: 400 KRDHRINSSAYRLVINGLCRNKRVDIAIQVLEMMISGRYKPDEEIYSTLIKSVADAGMVE 459

Query: 312 --KELVQKLLKR 321
              EL QKL++R
Sbjct: 460 EADELHQKLIER 471



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 157/358 (43%), Gaps = 28/358 (7%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ ++    K+ Q R A+ L  +M  SGC PD   YN +I +        +A+ 
Sbjct: 89  VPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGKFDQAVE 148

Query: 68  KALGYFQKMKGMERCKPNIVTYNILL----RACAQARNVDQVNALFKELHESILAPDIYT 123
              G  ++      C P ++ Y IL+    + C   R ++    + +++      PD+ T
Sbjct: 149 FWRGQLRR-----GCLPYLIPYTILIELVWKHCGTVRALE----VLEDMAIEGCYPDLVT 199

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN +++   K G  ++   ++  + S+  +P+ IT+N L+ S      +D+++++   + 
Sbjct: 200 YNSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMK 259

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
            +   PT+ T+N +I    K  L  +A   F +M +   +P  ITY  ++T       V 
Sbjct: 260 KTSHPPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVD 319

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A ++F  LS       + T N +++     G   EA  L+      G+ PD  T++ L 
Sbjct: 320 EALQVFVLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLV 379

Query: 304 KAYTKANMKELVQKLLKRMEQ--------------NGIVPNKRFFLEALETFSSSLAG 347
             +   +  E   ++L+ M +              NG+  NKR  + A++     ++G
Sbjct: 380 WGFCWIDQVEDAVEILREMGKRDHRINSSAYRLVINGLCRNKRVDI-AIQVLEMMISG 436



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 139/324 (42%), Gaps = 7/324 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I ++   + LI  + + G+   A  +   M  SG  PD   YN ++        K + L 
Sbjct: 54  IPNSTCSTNLIRGLVRIGRIERASRVLKTMVMSGLVPDVITYNMMVGGFC----KRRQLR 109

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            A+   + M  +  C P+++TYN ++R+       DQ    ++        P +  Y  +
Sbjct: 110 SAIDLLEDMS-LSGCPPDVITYNTIIRSLFDNGKFDQAVEFWRGQLRRGCLPYLIPYTIL 168

Query: 128 MDAYGKN-GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++   K+ G ++ +E VL  M    C PD++T+N L++   K   ++    +  +++   
Sbjct: 169 IELVWKHCGTVRALE-VLEDMAIEGCYPDLVTYNSLVNFASKEGKYEDAALIIYNILSHG 227

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P   T+NS++ +     L  + + +   M    + P+ +TY  +I     C  V RA 
Sbjct: 228 MEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILINGLCKCGLVERAI 287

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
             F ++        + T N +L A C  G+  EA  +F    +   +P   TY  +    
Sbjct: 288 NFFVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSNCSPGLITYNTVIDGL 347

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
           T+    +   KL  +M + GI P+
Sbjct: 348 TRRGYMDEALKLYNQMIEKGIAPD 371



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 105/274 (38%), Gaps = 1/274 (0%)

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
           LH   K  +L +A      M  + +  PN      L+R   +   +++ + + K +  S 
Sbjct: 29  LHNLCKKGSLMEATKLIDIMSRVNQI-PNSTCSTNLIRGLVRIGRIERASRVLKTMVMSG 87

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           L PD+ TYN ++  + K   ++    +L  M  + C PD+IT+N +I S      FD+  
Sbjct: 88  LVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGKFDQAV 147

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           + ++  +     P L  +  +I    K     +A  V + M      P  +TY  ++   
Sbjct: 148 EFWRGQLRRGCLPYLIPYTILIELVWKHCGTVRALEVLEDMAIEGCYPDLVTYNSLVNFA 207

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                   A  I   +   G +    T N++L + C  GL  E D +          P  
Sbjct: 208 SKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTV 267

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            TY +L     K  + E       +M      P+
Sbjct: 268 VTYNILINGLCKCGLVERAINFFVQMVSENCSPD 301



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 96/208 (46%), Gaps = 5/208 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  + K G    A+  F +M +  C PD   YN L+TA      K   + +AL  F
Sbjct: 270 YNILINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALC----KEGMVDEALQVF 325

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             +     C P ++TYN ++    +   +D+   L+ ++ E  +APD  T+  ++  +  
Sbjct: 326 VLLSD-SNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWGFCW 384

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              +++   +L  M     + +   + L+I+   + +  D   QV + ++  + KP    
Sbjct: 385 IDQVEDAVEILREMGKRDHRINSSAYRLVINGLCRNKRVDIAIQVLEMMISGRYKPDEEI 444

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMK 221
           ++++I +   A +  +A+ + QK+   K
Sbjct: 445 YSTLIKSVADAGMVEEADELHQKLIERK 472



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 48/246 (19%), Positives = 93/246 (37%), Gaps = 37/246 (15%)

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D  T N ++    K G + E   ++  M      P+      LI    +    ++  +V 
Sbjct: 21  DEETNNEILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVL 80

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII------ 233
           K+++ S   P + T+N M+  + K R    A  + + M+     P  ITY  II      
Sbjct: 81  KTMVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDN 140

Query: 234 ------------------------------TMYGYCDNVSRAREIFDELSKLGKDMKVST 263
                                          ++ +C  V RA E+ ++++  G    + T
Sbjct: 141 GKFDQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTV-RALEVLEDMAIEGCYPDLVT 199

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N+++      G   +A L+  N  + G+ P++ TY  L  +     + + V ++L  M+
Sbjct: 200 YNSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMK 259

Query: 324 QNGIVP 329
           +    P
Sbjct: 260 KTSHPP 265


>gi|125525011|gb|EAY73125.1| hypothetical protein OsI_00999 [Oryza sativa Indica Group]
          Length = 634

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 160/337 (47%), Gaps = 12/337 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+A +  +       WL +E+ ++G RPD   +NALI A +    +A+ + +A   F
Sbjct: 117 YTTLLAALTSQRAFDTIPWLLAEVEDAGLRPDSIFFNALINALV----EARRMGEATNTF 172

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL------HESILAPDIYTYNGV 127
            +M G   C+P   T+N L++    A   ++   +F  +       E+ + P++ TYN +
Sbjct: 173 LRM-GHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGGAGGEAAVRPNLTTYNIL 231

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-QAFDKMEQVFKSLMHSK 186
           + A+   G ++E   V++RM+++   PD++T+N L  +Y K  + +   E V +    + 
Sbjct: 232 VKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDETWRAEELVVEMAQQAG 291

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            + +  T+  ++  Y +    G+A    ++M      P+ I +  ++  +   ++++   
Sbjct: 292 LRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFNTLLKGFLDANDMAAVD 351

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           ++   + + G    + T +  L A    G   +   +F+     G+ PD   Y +L K Y
Sbjct: 352 DVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGY 411

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
            +A   E  ++LL++M + G+ PN   F   +  + S
Sbjct: 412 VRAQQPEKAEELLRQMGRLGVRPNVVTFTTVISGWCS 448



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 117/268 (43%), Gaps = 7/268 (2%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P++VTY  LL A    R  D +  L  E+ ++ L PD   +N +++A  +   + E  +
Sbjct: 111 RPSLVTYTTLLAALTSQRAFDTIPWLLAEVEDAGLRPDSIFFNALINALVEARRMGEATN 170

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE------KPTLPTFNS 196
              RM  + C+P   TFN LI  YG     ++ ++VF  +           +P L T+N 
Sbjct: 171 TFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGGAGGEAAVRPNLTTYNI 230

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS-KL 255
           ++  +  A    +A  V  +M A    P  +TY  + + Y   D   RA E+  E++ + 
Sbjct: 231 LVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDETWRAEELVVEMAQQA 290

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
           G      T   ++  YC  G   EA        + GV P+   +  L K +  AN    V
Sbjct: 291 GLRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFNTLLKGFLDANDMAAV 350

Query: 316 QKLLKRMEQNGIVPNKRFFLEALETFSS 343
             +L  MEQ GI P+   +   L   SS
Sbjct: 351 DDVLGLMEQFGIKPDIVTYSHQLNALSS 378



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 111/256 (43%), Gaps = 7/256 (2%)

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +RA   AR   Q ++ F+ L +    P + TY  ++ A         +  +L+ ++    
Sbjct: 86  MRAMIDARRPHQAHSAFRHLVDDGHRPSLVTYTTLLAALTSQRAFDTIPWLLAEVEDAGL 145

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           +PD I FN LI++  + +   +    F  + HS  +PT  TFN++I  YG A    +++ 
Sbjct: 146 RPDSIFFNALINALVEARRMGEATNTFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQR 205

Query: 213 VFQKMTAMKYT------PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
           VF  M +          P+  TY  ++  +     +  A  +   +   G D  V T N 
Sbjct: 206 VFDMMASGGAGGEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNT 265

Query: 267 MLEAYCMNGLPTEA-DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
           +  AY  N     A +L+ E +   G+     T+ ++   Y +        + +++M+ +
Sbjct: 266 LASAYAKNDETWRAEELVVEMAQQAGLRTSERTWGIIVGGYCREGRLGEALRCVRQMKDS 325

Query: 326 GIVPNKRFFLEALETF 341
           G++PN   F   L+ F
Sbjct: 326 GVLPNVIVFNTLLKGF 341



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/302 (19%), Positives = 135/302 (44%), Gaps = 8/302 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD--KAKALAKALG 71
           Y+ L+      G+   A  + + MR SG  PD   YN L +A+    +  +A+ L   + 
Sbjct: 228 YNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDETWRAEELVVEMA 287

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
               ++  ER      T+ I++    +   + +     +++ +S + P++  +N ++  +
Sbjct: 288 QQAGLRTSER------TWGIIVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFNTLLKGF 341

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
                +  ++ VL  M+    KPDI+T++  +++        K  +VF  ++ +  +P  
Sbjct: 342 LDANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDP 401

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             ++ +   Y +A+   KAE + ++M  +   P+ +T+  +I+ +    ++  A  ++  
Sbjct: 402 QVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPNVVTFTTVISGWCSVADMGNAVRVYAA 461

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G    + T   ++  Y     P +A+ + +   + GV P  +TY L+  A+    +
Sbjct: 462 MRDAGVRPNLRTFETLIWGYSELKQPWKAEEVLQMMQDAGVRPKQTTYCLVADAWKAVGL 521

Query: 312 KE 313
            E
Sbjct: 522 VE 523


>gi|299471515|emb|CBN80001.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 687

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 170/387 (43%), Gaps = 42/387 (10%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD   YS +IA  G+  + + AM L  +MR  G  P+   YN+ I A      K     +
Sbjct: 285 ADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACA----KGDRWKE 340

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACA-QARNVDQVNALFKELHESILAPDIYTYNGV 127
           AL   ++M  +    P +++YN    ACA   R V+ +  L KE+    +AP+  +YN  
Sbjct: 341 ALDLLREMTTVGLV-PTVISYNSATAACAVNGRWVEALE-LLKEMPAQGIAPNTISYNSA 398

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +DA  K G  ++   +L  M +    PDII+FN  ID+ G+ Q ++   ++ + +  +  
Sbjct: 399 LDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDACGRGQQWETAVELLREMPTAGL 458

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P + T+NS I   G++    +A  +F++M     +P+ +TY  +I      +    A +
Sbjct: 459 TPNVITYNSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQ 518

Query: 248 IFDELSKLGKDMKVSTLNAMLEA-----------YCMNGLPT------------------ 278
           +   +   G    V + N+ +EA             + G+PT                  
Sbjct: 519 LLTGMPARGVAPDVISYNSAIEACGKGEQWELALQLLKGMPTRGPKPDIISYNSAVTACA 578

Query: 279 ------EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
                 EA  L ++   +G+TP++ +Y     A  K    ++  ++LK M+ +G  PN  
Sbjct: 579 KSGRWREALGLLKDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTHGATPNLI 638

Query: 333 FFLEALETFSSSLAGSQSGSAKTDLTR 359
            +  A++  +      ++    TDL R
Sbjct: 639 TYSAAIDACAKQGRWKEAVDLLTDLRR 665



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 136/297 (45%), Gaps = 5/297 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+  +    K GQ   A+ L   M   G  PD   +N+ I A      + +    A+   
Sbjct: 395 YNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDAC----GRGQQWETAVELL 450

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M       PN++TYN  + AC ++    +   LF+E+    L+P++ TYN ++DA  K
Sbjct: 451 REMP-TAGLTPNVITYNSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAK 509

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
               +    +L+ M +    PD+I++N  I++ GK + ++   Q+ K +     KP + +
Sbjct: 510 GEQWELAVQLLTGMPARGVAPDVISYNSAIEACGKGEQWELALQLLKGMPTRGPKPDIIS 569

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS +    K+    +A  + + M  +  TP+ ++Y   I   G  +    A  I  E+ 
Sbjct: 570 YNSAVTACAKSGRWREALGLLKDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQ 629

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
             G    + T +A ++A    G   EA  L  +    G+TPD+ TY  +  A+ + +
Sbjct: 630 THGATPNLITYSAAIDACAKQGRWKEAVDLLTDLRRQGLTPDAQTYLTVISAFQRCS 686



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 144/337 (42%), Gaps = 7/337 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEM--RNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           D   Y+  IA   K G+ + AM L ++M     G  PD   YN+ I A            
Sbjct: 144 DVVTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAAC----SNGGRWK 199

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A+   ++M   +   PN++TYN  + ACA+ R  ++   L +E+ E    P   TYN V
Sbjct: 200 EAMDLLEQMVA-QGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPV 258

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +DA  K G   E   +L +M +N    D+I+++ +I + G+ + + +   + + +     
Sbjct: 259 IDACAKGGRWLEAMDLLGQMLTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGV 318

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P + ++NS I    K     +A  + ++MT +   P+ I+Y               A E
Sbjct: 319 SPNVISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVISYNSATAACAVNGRWVEALE 378

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +  E+   G      + N+ L+A    G   +A  L      +G  PD  ++     A  
Sbjct: 379 LLKEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDACG 438

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           +    E   +LL+ M   G+ PN   +  A+E    S
Sbjct: 439 RGQQWETAVELLREMPTAGLTPNVITYNSAIEACGRS 475



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 140/321 (43%), Gaps = 7/321 (2%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T  Y+ +I    K G+   AM L  +M  +    D   Y+++I A      + +   +A+
Sbjct: 252 TRTYNPVIDACAKGGRWLEAMDLLGQMLTNDIPADVISYSSVIAAC----GRGRRWKEAM 307

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
              ++M+  +   PN+++YN  + ACA+     +   L +E+    L P + +YN    A
Sbjct: 308 DLLEQMR-TQGVSPNVISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVISYNSATAA 366

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
              NG   E   +L  M +    P+ I++N  +D+  K   ++K  ++ + +      P 
Sbjct: 367 CAVNGRWVEALELLKEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPD 426

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           + +FNS I   G+ +    A  + ++M     TP+ ITY   I   G       A  +F 
Sbjct: 427 IISFNSAIDACGRGQQWETAVELLREMPTAGLTPNVITYNSAIEACGRSARWQEAMGLFR 486

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTE-ADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           E+   G    V T N+M++A C  G   E A  L       GV PD  +Y    +A  K 
Sbjct: 487 EMPTRGLSPNVVTYNSMIDA-CAKGEQWELAVQLLTGMPARGVAPDVISYNSAIEACGKG 545

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              EL  +LLK M   G  P+
Sbjct: 546 EQWELALQLLKGMPTRGPKPD 566



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 140/332 (42%), Gaps = 13/332 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+   A     G+   A+ L  EM   G  P+   YN+ + A      K     KA+   
Sbjct: 360 YNSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSALDACA----KGGQWEKAVKLL 415

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M  +    P+I+++N  + AC + +  +    L +E+  + L P++ TYN  ++A G+
Sbjct: 416 RGMSTVGS-DPDIISFNSAIDACGRGQQWETAVELLREMPTAGLTPNVITYNSAIEACGR 474

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +   +E   +   M +    P+++T+N +ID+  K + ++   Q+   +      P + +
Sbjct: 475 SARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQLLTGMPARGVAPDVIS 534

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE---IFD 250
           +NS I   GK      A  + + M      P  I+Y   +T    C    R RE   +  
Sbjct: 535 YNSAIEACGKGEQWELALQLLKGMPTRGPKPDIISYNSAVTA---CAKSGRWREALGLLK 591

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL-LFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +++ +G      +  A + A C  G   +  + + +     G TP+  TY     A  K 
Sbjct: 592 DMATVGLTPNTVSYGAAIHA-CGKGEQWDVAVRILKEMQTHGATPNLITYSAAIDACAKQ 650

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
              +    LL  + + G+ P+ + +L  +  F
Sbjct: 651 GRWKEAVDLLTDLRRQGLTPDAQTYLTVISAF 682



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 142/332 (42%), Gaps = 24/332 (7%)

Query: 10  DTGIYSKL--IAVMGKKGQTRLAMWLFSEMRNS-GCRPDPSVYNALITAHLHTRDKAKAL 66
           D G+  +   + V+ ++G+  L     S    S G +P   V    I      RD   AL
Sbjct: 36  DAGVSGEATRLGVLSRRGEGSLEPSTRSRGAASRGGKPKSLVKLKSILLEAKGRDWRTAL 95

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A AL  F+   G      +  +YNI + AC+  R       L +E+    + PD+ TYN 
Sbjct: 96  A-ALDEFKISGG----SLDTTSYNIAIAACSNGRQWATAVRLLREMPTEGVTPDVVTYNS 150

Query: 127 VMDAYGKNGMIKEMESVLSRM--KSNQCKPDIITFNLLID--SYGKR--QAFDKMEQVFK 180
            + A  K G  KE   +L++M   +    PD++T+N  I   S G R  +A D +EQ   
Sbjct: 151 AIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGGRWKEAMDLLEQ--- 207

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++     P L T+NS I    K R   +A  + +++    + PS  TY  +I     C 
Sbjct: 208 -MVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDA---CA 263

Query: 241 NVSRAREIFDELSK-LGKDMKVSTLN-AMLEAYCMNGLP-TEADLLFENSHNMGVTPDSS 297
              R  E  D L + L  D+    ++ + + A C  G    EA  L E     GV+P+  
Sbjct: 264 KGGRWLEAMDLLGQMLTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVI 323

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           +Y     A  K +  +    LL+ M   G+VP
Sbjct: 324 SYNSAIDACAKGDRWKEALDLLREMTTVGLVP 355



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 11/231 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+  I   G+  + + AM LF EM   G  P+   YN++I A    + +   LA  L   
Sbjct: 465 YNSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDAC--AKGEQWELAVQLLTG 522

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
              +G+    P++++YN  + AC +    +    L K +      PDI +YN  + A  K
Sbjct: 523 MPARGV---APDVISYNSAIEACGKGEQWELALQLLKGMPTRGPKPDIISYNSAVTACAK 579

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G  +E   +L  M +    P+ +++   I + GK + +D   ++ K +      P L T
Sbjct: 580 SGRWREALGLLKDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTHGATPNLIT 639

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDN 241
           +++ I    K   QG+ +     +T ++    TP   TY  +I+ +  C +
Sbjct: 640 YSAAIDACAK---QGRWKEAVDLLTDLRRQGLTPDAQTYLTVISAFQRCSD 687


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 145/325 (44%), Gaps = 10/325 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  LI  +GK+ + + A  LF E R  GC P    YN +I        K   +  A
Sbjct: 29  DVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLC----KCGRIENA 84

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  +  M      +P +VTY+ L+    +   VD+   L +E+     AP+  TYN +++
Sbjct: 85  LTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVN 144

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQVFKSLMHS 185
           A    G  KE  S+L +M +N C P++ITF L+I    K      AF  ++++F  ++ S
Sbjct: 145 ALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMF--MIES 202

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P + TFNS++    K +    A  VF++       P+ +TY  +I        +  A
Sbjct: 203 GLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEA 262

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            ++  ++ +LG      T + +++     G   +A ++     + G  PD+ TY  L   
Sbjct: 263 LQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDG 322

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
           + K         LL+ M + G  P+
Sbjct: 323 FFKRQRLREAVGLLREMLEAGFHPS 347



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 147/324 (45%), Gaps = 16/324 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEM--RNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           +  +I  + K+G+   A  +  EM    SG  PD   +N+++        K + +  A  
Sbjct: 174 FGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLC----KEQRILDAHN 229

Query: 72  YFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
            F++   +ER C+PN+VTY+ L+   ++   +D+   L  ++ E     +  TY+ V+D 
Sbjct: 230 VFKR--ALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDG 287

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             K G +++   VL +M+   C PD +T+N LID + KRQ   +   + + ++ +   P+
Sbjct: 288 LLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPS 347

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           + T+ ++     ++    +A  +   M A    P+ ITY  I+   G C    R  E   
Sbjct: 348 VVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVD--GLC-KAGRVTEALG 404

Query: 251 ELSKLGKDMKVS----TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
              K+ +D  V+      +A+++  C  G   EA    E     G  PD  T+ +L    
Sbjct: 405 YFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGL 464

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
             A   +   +L + M + G VP+
Sbjct: 465 CDAGRIDTGLELFRGMAERGCVPD 488



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 136/308 (44%), Gaps = 10/308 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI  + K  +   A+ L ++M   GCR +   Y+ ++   L    K   +  A+   
Sbjct: 246 YSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLL----KVGRMEDAVVVL 301

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M+    C P+ VTYN L+    + + + +   L +E+ E+   P + TY  +     +
Sbjct: 302 RQMRDAG-CLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCR 360

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLP 192
           +G   E   +L  M +  C P+ IT++ ++D   K     +    F+ +   +   P + 
Sbjct: 361 SGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVI 420

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFD 250
            ++++I    KA    +A    ++M      P  +T+  +I   G CD   +    E+F 
Sbjct: 421 AYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILIN--GLCDAGRIDTGLELFR 478

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            +++ G    + T   +++  C      EA  LF+   + G++PD ST + +     + N
Sbjct: 479 GMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVN 538

Query: 311 MKELVQKL 318
             E  +++
Sbjct: 539 RDEDAKRI 546



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 114/265 (43%), Gaps = 10/265 (3%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           A+T  YS ++  + K G+   A+ +  +MR++GC PD   YN LI        K + L +
Sbjct: 276 ANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFF----KRQRLRE 331

Query: 69  ALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A+G  ++M   G     P++VTY  L     ++   D+   +   +     AP+  TY+ 
Sbjct: 332 AVGLLREMLEAGFH---PSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSS 388

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
           ++D   K G + E      +M  ++   P +I ++ LID   K    D+  +  + ++ +
Sbjct: 389 IVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRA 448

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P + TF+ +I     A        +F+ M      P  +TY  ++        V  A
Sbjct: 449 GRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEA 508

Query: 246 REIFDELSKLGKDMKVSTLNAMLEA 270
            ++F ++   G     ST   M+  
Sbjct: 509 FDLFQQMRSDGLSPDRSTRRTMIHG 533



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 127/271 (46%), Gaps = 15/271 (5%)

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           K++ + KA+  F++M   +   P++VTY  L+    + R V +   LF+E       P +
Sbjct: 7   KSRKVDKAITLFKQMVD-KAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTV 65

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSN-QCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            TYN ++D   K G I+   ++   M  +   +P ++T++ LID   +    DK  ++ +
Sbjct: 66  VTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLE 125

Query: 181 SLMHSKEKPTLPTFNSMI---INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
            +      P   T+N+++   +  G+++   +A  + ++M A    P  IT+  II   G
Sbjct: 126 EMAGRGCAPNAVTYNTLVNALLGQGRSK---EAFSLLEQMAANGCPPELITFGLIIK--G 180

Query: 238 YC--DNVSRAREIFDELSKL--GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
            C    +  A  + DE+  +  G    V T N++L+  C      +A  +F+ +   G  
Sbjct: 181 LCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCR 240

Query: 294 PDSSTYKLLYKAYTK-ANMKELVQKLLKRME 323
           P+  TY  L    +K A M E +Q L K +E
Sbjct: 241 PNVVTYSTLIDGLSKMAKMDEALQLLAKMVE 271


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 149/310 (48%), Gaps = 9/310 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G+TR A+ +  ++       D  +YN +I    ++  K KA++ A   +
Sbjct: 167 YRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIII----NSLCKDKAVSDAYQLY 222

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   +R  P++VT+N L+        + +   LF E+    + PD+YT++ ++DA  K
Sbjct: 223 SEMI-TKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCK 281

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G I   +++L+ M      PD++T++ L+D Y      +K + VF ++      P   +
Sbjct: 282 DGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHS 341

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N MI   GK ++  +A  +F++M      P  +TY  +I        +S A ++ DE+ 
Sbjct: 342 YNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMH 401

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA---- 309
             G    + T N++++  C N    +A  L +   + G+ P   TY +L     K     
Sbjct: 402 NNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLK 461

Query: 310 NMKELVQKLL 319
           N +++ Q LL
Sbjct: 462 NAQDVFQDLL 471



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 145/322 (45%), Gaps = 11/322 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ LI      GQ + A  LF EM      PD   ++ L+ A    +D     AK 
Sbjct: 233 DVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDAL--CKDGNITRAKN 290

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +      +G+    P++VTY+ L+        V++   +F  +    +AP  ++YN +++
Sbjct: 291 MLAVMMKQGV---IPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMIN 347

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
             GK  M+ E  S+   M      PD +T+N LID   K        Q+    MH+   P
Sbjct: 348 GLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDE-MHNNGIP 406

Query: 190 T-LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAR 246
             + T+NS+I    K     KA  + +K+      PS  TY  +I   G C    +  A+
Sbjct: 407 ADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILID--GLCKGGRLKNAQ 464

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           ++F +L   G  +   T N M+   C  GL  EA++L     N G+ PD+ TY+ + +A 
Sbjct: 465 DVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRAL 524

Query: 307 TKANMKELVQKLLKRMEQNGIV 328
            + +  E  +KLL+ M   G++
Sbjct: 525 FRKDENEKAEKLLREMIIRGLL 546



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 140/336 (41%), Gaps = 32/336 (9%)

Query: 25  GQTRLAMWLFSEMRNSGCRPDPSVYNALITA---------HLHTRDKAKALA-------- 67
           G+   A  +F+++   G  P    +N LI            LH  D   AL         
Sbjct: 108 GEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSY 167

Query: 68  --------------KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH 113
                          AL   +K++G +    ++V YNI++ +  + + V     L+ E+ 
Sbjct: 168 RTLINGLCKIGETRAALQMLKKIEG-KLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMI 226

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
              ++PD+ T+N ++  +   G +KE   +   M      PD+ TF++L+D+  K     
Sbjct: 227 TKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNIT 286

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           + + +   +M     P + T++S++  Y       KA++VF  M+ +   P   +Y  +I
Sbjct: 287 RAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMI 346

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
              G    V  A  +F E+   G      T N++++  C  G  + A  L +  HN G+ 
Sbjct: 347 NGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIP 406

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
            D  TY  L     K +  +    L+K+++  GI P
Sbjct: 407 ADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQP 442



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 112/254 (44%), Gaps = 10/254 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M KQ   I D   YS L+       +   A  +FS M   G  P    YN +I       
Sbjct: 295 MMKQ-GVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMING----L 349

Query: 61  DKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
            K K + +AL  F++M  KG+    P+ VTYN L+    +   +     L  E+H + + 
Sbjct: 350 GKIKMVDEALSLFKEMCCKGIA---PDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIP 406

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
            DI TYN ++D   KN  I +  +++ ++K    +P + T+N+LID   K       + V
Sbjct: 407 ADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDV 466

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           F+ L+         T+N MI    K  L  +AE +  KM      P  +TYE II     
Sbjct: 467 FQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFR 526

Query: 239 CDNVSRAREIFDEL 252
            D   +A ++  E+
Sbjct: 527 KDENEKAEKLLREM 540



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/325 (20%), Positives = 139/325 (42%), Gaps = 40/325 (12%)

Query: 43  RPDPSV--YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR 100
           RP PS+  +N ++ + +   +     A +L +  ++KG+    P IVT+NIL+       
Sbjct: 52  RPTPSIVEFNKILGSIVKANNNHYTTAISLSHQLELKGIT---PTIVTFNILVNCYCHLG 108

Query: 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE--------------MESV--- 143
            +    ++F ++ +    P   T+N +++    NG +KE              ++ V   
Sbjct: 109 EMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYR 168

Query: 144 ------------------LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
                             L +++      D++ +N++I+S  K +A     Q++  ++  
Sbjct: 169 TLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITK 228

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
           +  P + TFNS+I+ +       +A  +F +M      P   T+  ++       N++RA
Sbjct: 229 RISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRA 288

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           + +   + K G    V T +++++ YC+     +A  +F     +GV P + +Y ++   
Sbjct: 289 KNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMING 348

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
             K  M +    L K M   GI P+
Sbjct: 349 LGKIKMVDEALSLFKEMCCKGIAPD 373



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 4/160 (2%)

Query: 168 KRQAFDKMEQV--FKSLMHSKEKPTLPTFNSMIINYGKARLQG--KAEYVFQKMTAMKYT 223
           K   FD    V  F  ++  +  P++  FN ++ +  KA       A  +  ++     T
Sbjct: 32  KSNDFDVNNDVSSFHRMLRMRPTPSIVEFNKILGSIVKANNNHYTTAISLSHQLELKGIT 91

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
           P+ +T+  ++  Y +   ++ A  IF ++ KLG      T N ++   C+NG   EA   
Sbjct: 92  PTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHF 151

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            ++   +G   D  +Y+ L     K        ++LK++E
Sbjct: 152 HDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIE 191


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 151/357 (42%), Gaps = 54/357 (15%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--LHTRDKAKALA 67
           D  IYS +I  + K G    A +LFSEM   G  P+   YN +I           A+ L 
Sbjct: 79  DVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLL 138

Query: 68  KALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           + +        +ER   P+++T+N L+ A  +   + +   L  E+    + PD  TYN 
Sbjct: 139 RDM--------IEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 190

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  + K+    + + +   M S    PD++TFN +ID Y + +  D+  Q+ + +    
Sbjct: 191 MIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRG 246

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN----- 241
                 T+N++I  + +      A+ +FQ+M +    P  IT  C I +YG+C+N     
Sbjct: 247 LVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTIT--CNILLYGFCENEKLEE 304

Query: 242 --------------------------------VSRAREIFDELSKLGKDMKVSTLNAMLE 269
                                           V  A ++F  L   G +  V T N M+ 
Sbjct: 305 ALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMIS 364

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
            +C     ++A++LF    + G  PD+STY  L +   KA   +   +L+  M  NG
Sbjct: 365 GFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNG 421



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 168/352 (47%), Gaps = 26/352 (7%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  ++  M K G T+ A+ L S+M  +  +PD  +Y+A+I      +D   + A+ 
Sbjct: 44  DVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRL--CKDGHHSDAQY 101

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNG 126
           L  F +M  KG+    PN+ TYN ++   C+  R  D    L +++ E  + PD+ T+N 
Sbjct: 102 L--FSEMLEKGI---APNVFTYNCMIDGFCSFGRWSD-AQRLLRDMIEREINPDVLTFNA 155

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++ A  K G + E E +   M      PD +T+N +I  + K   FD  + +F  LM S 
Sbjct: 156 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMF-DLMAS- 213

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSR 244
             P + TFN++I  Y +A+   +   + ++++      +  TY  +I  +G+C  DN++ 
Sbjct: 214 --PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLI--HGFCEVDNLNA 269

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A+++F E+   G      T N +L  +C N    EA  LFE      +  D+  Y ++  
Sbjct: 270 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIH 329

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTD 356
              K +  +    L   +  +G+ P+       ++T++  ++G    SA +D
Sbjct: 330 GMCKGSKVDEAWDLFCSLPIHGVEPD-------VQTYNVMISGFCGKSAISD 374



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 142/315 (45%), Gaps = 11/315 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI  +  +G+   A  L ++M   G   D   Y  ++       D   AL       
Sbjct: 13  FNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSAL----NLL 68

Query: 74  QKMKGMERCKPNIVTYN-ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            KM+     KP++V Y+ I+ R C    + D    LF E+ E  +AP+++TYN ++D + 
Sbjct: 69  SKMEE-THIKPDVVIYSAIIDRLCKDGHHSD-AQYLFSEMLEKGIAPNVFTYNCMIDGFC 126

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
             G   + + +L  M   +  PD++TFN LI +  K     + E++   ++H    P   
Sbjct: 127 SFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTV 186

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+NSMI  + K      A+++F  M     +P  +T+  II +Y     V    ++  E+
Sbjct: 187 TYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREI 242

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           S+ G     +T N ++  +C       A  LF+   + GV PD+ T  +L   + +    
Sbjct: 243 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 302

Query: 313 ELVQKLLKRMEQNGI 327
           E   +L + ++ + I
Sbjct: 303 EEALELFEVIQMSKI 317



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 113/248 (45%), Gaps = 6/248 (2%)

Query: 84  PNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           P ++T+N L+   C + R V +  AL  ++    L  D+ TY  +++   K G  K   +
Sbjct: 8   PVVITFNTLINGLCLEGR-VLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALN 66

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +LS+M+    KPD++ ++ +ID   K       + +F  ++     P + T+N MI  + 
Sbjct: 67  LLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFC 126

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
                  A+ + + M   +  P  +T+  +I+       +  A ++ DE+          
Sbjct: 127 SFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTV 186

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T N+M+  +C +    +A  +F+    +  +PD  T+  +   Y +A   +   +LL+ +
Sbjct: 187 TYNSMIYGFCKHNRFDDAKHMFD----LMASPDVVTFNTIIDVYCRAKRVDEGMQLLREI 242

Query: 323 EQNGIVPN 330
            + G+V N
Sbjct: 243 SRRGLVAN 250



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 5/171 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R  +A+T  Y+ LI    +      A  LF EM + G  PD    N L    L+   + 
Sbjct: 244 RRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNIL----LYGFCEN 299

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           + L +AL  F+ ++ M +   + V YNI++    +   VD+   LF  L    + PD+ T
Sbjct: 300 EKLEEALELFEVIQ-MSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQT 358

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
           YN ++  +     I +   +  +MK N  +PD  T+N LI    K    DK
Sbjct: 359 YNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDK 409



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  Y+ +I  M K  +   A  LF  +   G  PD   YN +I+          A++ A
Sbjct: 320 DTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFC----GKSAISDA 375

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F KMK     +P+  TYN L+R C +A  +D+   L  E+  +  + D +T   V D
Sbjct: 376 NVLFHKMKDNGH-EPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD 434

Query: 130 AYGKNGMIKEMESVLS 145
                 + K    +LS
Sbjct: 435 LITDGRLDKSFSDMLS 450


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 147/317 (46%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +S LI     +G+   A+ LF  M   G +P+   Y+ +I   L    K   + K L + 
Sbjct: 164 FSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKG-LCRVGKTTEVIKLLEHM 222

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + +     C+P++V YN ++    + R V++   +F ++  + + P + TY  ++     
Sbjct: 223 KVVG----CEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRN 278

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G  KE   +L+ MK     PD++ F++LID   K     +   + K++     +P + T
Sbjct: 279 LGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVAT 338

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N+++  Y       +A  VF+ M +    P   ++  ++  Y     +  A+++FDE++
Sbjct: 339 YNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMT 398

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G      + N ++   C    P EA+ LF++ H+ G  P+  TY +L    +K    +
Sbjct: 399 HRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLD 458

Query: 314 LVQKLLKRMEQNGIVPN 330
               L + ME +G+ P+
Sbjct: 459 QAMGLFRAMENSGLKPD 475



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 145/326 (44%), Gaps = 5/326 (1%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R Y  +   YS +I  + + G+T   + L   M+  GC PD  +YN ++        K +
Sbjct: 190 RGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLC----KDR 245

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            + +A+  F KMKG     P +VTY  L+          +   L  E+    + PD+  +
Sbjct: 246 LVNEAVHIFCKMKG-TGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAF 304

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           + ++D   K G + E   +L  M     +PD+ T+N L++ Y  R    +  +VF+ ++ 
Sbjct: 305 SVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMIS 364

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P + +F+ ++  Y KA+   +A+ +F +MT     P  ++Y  +I+          
Sbjct: 365 KGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLE 424

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A E+F ++   G    + T + +L+     G   +A  LF    N G+ PD  TY ++  
Sbjct: 425 AEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMID 484

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
              K    +  ++L   +   G+ PN
Sbjct: 485 GMCKYGKFKDARELFAELSVKGLQPN 510



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 121/251 (48%), Gaps = 6/251 (2%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +PN++T++ L+        + +   LF  +      P++++Y+ ++    + G   E+  
Sbjct: 158 EPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIK 217

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +L  MK   C+PD++ +N ++D   K +  ++   +F  +  +   PT+ T+ S+I  +G
Sbjct: 218 LLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLI--HG 275

Query: 203 KARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
              L G+ +  F  +  MK     P  + +  +I +      VS AR I   ++++G + 
Sbjct: 276 LRNL-GRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEP 334

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            V+T N ++  YC+     EA  +FE   + G  PD  ++ +L   Y KA   +  ++L 
Sbjct: 335 DVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLF 394

Query: 320 KRMEQNGIVPN 330
             M   G++P+
Sbjct: 395 DEMTHRGLIPD 405



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 106/249 (42%), Gaps = 36/249 (14%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH------------- 56
           D   +S LI +M K+G+   A  +   M   G  PD + YN L+  +             
Sbjct: 300 DLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVF 359

Query: 57  ------------------LHTRDKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRAC 96
                             ++   KAK + +A   F +M  +G+    P+ V+YN L+   
Sbjct: 360 EVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGL---IPDTVSYNTLISGL 416

Query: 97  AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
            QAR   +   LFK++H +   P++ TY+ ++D   K G + +   +   M+++  KPD+
Sbjct: 417 CQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDL 476

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           +T+N++ID   K   F    ++F  L     +P        I    K  L  +A   F++
Sbjct: 477 VTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQ 536

Query: 217 MTAMKYTPS 225
           M     +P+
Sbjct: 537 MEKDDCSPA 545



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/231 (19%), Positives = 94/231 (40%)

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
           RN++   + F  +  +   P I  +  +  A  +    K + S+  +M+      D+++ 
Sbjct: 70  RNINDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSL 129

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
            +LI+ + +    D    V   ++    +P + TF+++I  +      G+A  +F  M A
Sbjct: 130 TILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVA 189

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
             Y P+  +Y  II         +   ++ + +  +G +  V   N +++  C + L  E
Sbjct: 190 RGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNE 249

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           A  +F      G+ P   TY  L          +    LL  M+   I+P+
Sbjct: 250 AVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPD 300


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 158/334 (47%), Gaps = 12/334 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSG-CRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           Y  +I+   K G+   A+ +F EM   G  +P+  +YNALI  +    D+ K L  AL Y
Sbjct: 184 YGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYC---DQGK-LDTALLY 239

Query: 73  FQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             +M  +ER     + TYN+L+ A        +   L +E+    LAPD++TYN +++ +
Sbjct: 240 RDRM--VERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGH 297

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G +K+   +   M     +  ++T+  LI +  K+    + +++F   +    +P L
Sbjct: 298 CKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDL 357

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIF 249
             +N++I ++  +    +A  +  +M   +  P  +TY  +  M G C    V  AR++ 
Sbjct: 358 VLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTL--MRGLCLLGRVDEARKLI 415

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE+++ G    + T N ++  Y M G   +A  +     N G  P   TY  L +   K 
Sbjct: 416 DEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKN 475

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
              +  + ++K M +NGI P+   ++  +E  ++
Sbjct: 476 GQGDDAENMVKEMVENGITPDDSTYISLIEGLTT 509



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 5/224 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI    K+G  + A+ +F  M   G R     Y ALI A L  + + +   K 
Sbjct: 286 DVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYA-LSKKGQVQETDKL 344

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                + +G+   +P++V YN L+ + + + N+D+   +  E+ +  +APD  TYN +M 
Sbjct: 345 FDEAVR-RGI---RPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMR 400

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
                G + E   ++  M     +PD++T+N LI  Y  +       ++   +M+    P
Sbjct: 401 GLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 460

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           TL T+N++I    K      AE + ++M     TP   TY  +I
Sbjct: 461 TLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLI 504



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 118/296 (39%), Gaps = 13/296 (4%)

Query: 54  TAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH 113
           TA LH    A   A A   F  M  + R      T+NI+LR    A    +   L +++ 
Sbjct: 83  TASLHPLLSALPSAPAFALFADMFRL-RLPLCTTTFNIMLRHLCSAGKPARALELLRQMP 141

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLLIDSYGKRQAF 172
                P+  TYN V+  +   G ++    ++  M+      P+  T+  +I  + K    
Sbjct: 142 R----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRV 197

Query: 173 DKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKAEYVF---QKMTAMKYTPSFIT 228
           D+  +VF  ++   E KP    +N++I  Y     QGK +       +M       +  T
Sbjct: 198 DEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD---QGKLDTALLYRDRMVERGVAMTVAT 254

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
           Y  ++         + A E+ +E+   G    V T N ++  +C  G   +A  +FEN  
Sbjct: 255 YNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS 314

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             GV     TY  L  A +K    +   KL     + GI P+   +   + + S+S
Sbjct: 315 RRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 370



 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 10/126 (7%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+K+R    D   Y+ L+  +   G+   A  L  EM   G +PD   YN LI+ +    
Sbjct: 383 MEKKRIAPDDV-TYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKG 441

Query: 61  DKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
           D    +  AL    +M  KG     P ++TYN L++   +    D    + KE+ E+ + 
Sbjct: 442 D----VKDALRIRNEMMNKGF---NPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGIT 494

Query: 119 PDIYTY 124
           PD  TY
Sbjct: 495 PDDSTY 500


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 144/319 (45%), Gaps = 5/319 (1%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R+   D   Y  ++  + K  +   A+    EM   G +PD  +YN +++  L   +K +
Sbjct: 108 RYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSG-LCQEEKVE 166

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
              +A   F+KM   +R  PN+VTYN L+    +A  ++    LFKE+      P   +Y
Sbjct: 167 ---EARLLFEKMV-KQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSY 222

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++D + K   +   + V  +M  + C P+++T+  LID   K        +V   ++ 
Sbjct: 223 NTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVK 282

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P + T++ +I  + K R   +A  + ++M      P+ +TY  ++      D +  
Sbjct: 283 KGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLED 342

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A ++F  +++      V T N +L A C +     A  L+      G  PD+ TY  L  
Sbjct: 343 AFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAW 402

Query: 305 AYTKANMKELVQKLLKRME 323
             T+A      Q+L+++M+
Sbjct: 403 GLTRAGKVHEAQELMEKMK 421



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 137/319 (42%), Gaps = 10/319 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT--AHLHTRDKAKALAKALG 71
           Y  LI+ + K G    A  L   MR    +     Y+ +I     L+  ++A+ L + + 
Sbjct: 48  YGILISCLCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMA 107

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +          P+ +TY  ++    + + +D   A  +E+    + PD + YN V+   
Sbjct: 108 RYAP--------PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGL 159

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            +   ++E   +  +M   +  P+++T+N LI+   K    +   ++FK +      PT 
Sbjct: 160 CQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTE 219

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            ++N++I  + K +    A+ VF KM      P+ +TY  +I        V  A E+ D 
Sbjct: 220 VSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDG 279

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + K G    V+T + +++ +C      EA  L E     G+ P   TY +L  +  +A+ 
Sbjct: 280 MVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADK 339

Query: 312 KELVQKLLKRMEQNGIVPN 330
            E   KL + M Q    P 
Sbjct: 340 LEDAFKLFRGMAQRRCHPT 358



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 134/320 (41%), Gaps = 12/320 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I  + K  +   A  L  +M      PD   Y  ++     T    K +  AL   
Sbjct: 83  YSTIINWLCKLNRVEEARELIEKMARYA-PPDALTYGPIVERLCKT----KRIDDALATV 137

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           ++M  +G+   KP+   YN +L    Q   V++   LF+++ +  + P++ TYN +++  
Sbjct: 138 EEMATRGI---KPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGL 194

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K   I+    +   M      P  +++N LID + K++     + VF  ++ S   P +
Sbjct: 195 CKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNV 254

Query: 192 PTFNSMIINYGKA-RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
            T+ ++I    K+ ++Q  AE V   M     TP+  TY C+I  +     V  A ++ +
Sbjct: 255 VTYTTLIDGLSKSGKVQAAAE-VLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLE 313

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           ++   G    V T N +L + C      +A  LF         P   TY  L +A     
Sbjct: 314 QMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHK 373

Query: 311 MKELVQKLLKRMEQNGIVPN 330
             +   +L   M   G  P+
Sbjct: 374 QLDGAHRLYAEMIAKGCPPD 393



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 101/218 (46%), Gaps = 5/218 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y+     Y+ LI    KK     A  +F +M  S C P+   Y  LI   L    K +A 
Sbjct: 215 YVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDG-LSKSGKVQAA 273

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A+ L    K KG+    PN+ TY+ L+    + R VD+ + L +++    +AP + TYN 
Sbjct: 274 AEVLDGMVK-KGV---TPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNI 329

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++++  +   +++   +   M   +C P ++T+N L+ +    +  D   +++  ++   
Sbjct: 330 LLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKG 389

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 224
             P   T++++     +A    +A+ + +KM   K  P
Sbjct: 390 CPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKRNP 427



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/289 (18%), Positives = 108/289 (37%), Gaps = 38/289 (13%)

Query: 78  GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMI 137
            + R  P   T+N +    A+A  ++QV  +++ + E+        Y  ++    K G  
Sbjct: 2   ALRRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNF 61

Query: 138 KEMESVLSRMKSNQ---------------CK-------------------PDIITFNLLI 163
            E   +L  M+  +               CK                   PD +T+  ++
Sbjct: 62  DEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPIV 121

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           +   K +  D      + +     KP    +N ++    +     +A  +F+KM   +  
Sbjct: 122 ERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRIN 181

Query: 224 PSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
           P+ +TY  +I   G C    +  A E+F E++  G      + N +++ +C       A 
Sbjct: 182 PNVVTYNTLIN--GLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAK 239

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +F+        P+  TY  L    +K+   +   ++L  M + G+ PN
Sbjct: 240 DVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPN 288



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 87/223 (39%), Gaps = 1/223 (0%)

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           P   T+N V D + K G +++++ V   M           + +LI    K   FD+  ++
Sbjct: 8   PGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKL 67

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
             ++   + K     ++++I    K     +A  + +KM A    P  +TY  I+     
Sbjct: 68  LHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKM-ARYAPPDALTYGPIVERLCK 126

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              +  A    +E++  G        N +L   C      EA LLFE      + P+  T
Sbjct: 127 TKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVT 186

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           Y  L     KA   E   +L K M   G VP +  +   ++ F
Sbjct: 187 YNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGF 229


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 155/327 (47%), Gaps = 23/327 (7%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI      G+ +  +  F EM  +GC P+   YN LI A+     K   + +A G  
Sbjct: 13  YNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYC----KMGRIDEAFGLL 68

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           + M  KGM+   PN+++YN+++    +  ++ +   + +E+      PD  TYN +++ Y
Sbjct: 69  KSMSSKGMQ---PNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGY 125

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G   +   + + M  N   P ++T+  LI+S  K +  ++  + F  +     +P  
Sbjct: 126 CKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNE 185

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIF 249
            T+ ++I  + +  L  +A  +  +MT   ++PS +TY   I  +G+C  + +  A  + 
Sbjct: 186 RTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFI--HGHCVLERMEEALGVV 243

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKAY 306
            E+ + G    V + + ++  +C  G   E D  F+    M   GV+PD+ TY  L +  
Sbjct: 244 QEMVEKGLAPDVVSYSTIISGFCRKG---ELDRAFQMKQEMVEKGVSPDAVTYSSLIQGL 300

Query: 307 TKANMKELVQ--KLLKRMEQNGIVPNK 331
            +  M+ L +   L + M   G+ P++
Sbjct: 301 CE--MRRLTEACDLSQEMLDMGLPPDE 325



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 135/294 (45%), Gaps = 5/294 (1%)

Query: 37  MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 96
           M  S   P+   YN LI       +    L K LG F +M+    C PN+VTYN L+ A 
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGE----LQKGLGCFGEME-RNGCLPNVVTYNTLIDAY 55

Query: 97  AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
            +   +D+   L K +    + P++ +YN +++   + G +KE   +L  M      PD 
Sbjct: 56  CKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDE 115

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           +T+N L++ Y K   F +   +   ++ +   P++ T+ ++I +  KAR   +A   F +
Sbjct: 116 VTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQ 175

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M      P+  TY  +I  +     ++ A  I +E+++ G    V T NA +  +C+   
Sbjct: 176 MRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLER 235

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             EA  + +     G+ PD  +Y  +   + +    +   ++ + M + G+ P+
Sbjct: 236 MEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPD 289



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 151/332 (45%), Gaps = 9/332 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + ++G  + A  +  EM   G  PD   YN L+  +     K     +AL   
Sbjct: 83  YNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYC----KEGNFHQALVIH 138

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M       P++VTY  L+ +  +ARN+++    F ++    L P+  TY  ++D + +
Sbjct: 139 AEMV-RNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSR 197

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G++ E   +L+ M  +   P ++T+N  I  +   +  ++   V + ++     P + +
Sbjct: 198 QGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVS 257

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDE 251
           ++++I  + +     +A  + Q+M     +P  +TY  +I   G C+   ++ A ++  E
Sbjct: 258 YSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQ--GLCEMRRLTEACDLSQE 315

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +  +G      T   ++ AYC+ G   +A  L +   + G  PD+ TY +L     K   
Sbjct: 316 MLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQAR 375

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
               ++LL ++     VP+   +   +E  S+
Sbjct: 376 TREAKRLLFKLIYEESVPSDVTYDTLIENCSN 407



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/376 (20%), Positives = 155/376 (41%), Gaps = 55/376 (14%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           + +  D   Y+ L+    K+G    A+ + +EM  +G  P    Y ALI +      KA+
Sbjct: 109 KGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMC----KAR 164

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            L +A+ +F +M+ +   +PN  TY  L+   ++   +++   +  E+ ES  +P + TY
Sbjct: 165 NLNRAMEFFDQMR-IRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTY 223

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N  +  +     ++E   V+  M      PD+++++ +I  + ++   D+  Q+ + ++ 
Sbjct: 224 NAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVE 283

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P   T++S+I    + R   +A  + Q+M  M   P   TY  +I  Y    ++++
Sbjct: 284 KGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNK 343

Query: 245 AREIFDELSKLG------------------------------------------------ 256
           A  + DE+   G                                                
Sbjct: 344 ALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIE 403

Query: 257 --KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
              +++  ++ A+++ +CM GL  EAD +FE+       P  + Y ++   + +      
Sbjct: 404 NCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPK 463

Query: 315 VQKLLKRMEQNGIVPN 330
              L K M  +G VP+
Sbjct: 464 AFNLYKEMIHSGFVPH 479



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 95/228 (41%), Gaps = 35/228 (15%)

Query: 115 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
           S ++P++YTYN ++  +   G +++       M+ N C P+++T+N LID+Y K    D+
Sbjct: 4   SRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDE 63

Query: 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
              + KS+     +P L ++N +I    +     +A  + ++M    +TP  +TY     
Sbjct: 64  AFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTY----- 118

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
                                         N +L  YC  G   +A ++       GV+P
Sbjct: 119 ------------------------------NTLLNGYCKEGNFHQALVIHAEMVRNGVSP 148

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
              TY  L  +  KA       +   +M   G+ PN+R +   ++ FS
Sbjct: 149 SVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFS 196



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 115/272 (42%), Gaps = 29/272 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS +I+   +KG+   A  +  EM   G  PD   Y++LI      R     L +A
Sbjct: 254 DVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMR----RLTEA 309

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               Q+M  M    P+  TY  L+ A     ++++   L  E+      PD  TY+ +++
Sbjct: 310 CDLSQEMLDM-GLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLIN 368

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K    +E + +L ++   +  P  +T++ LI++    +        FKS++      
Sbjct: 369 GLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIE--------FKSVV------ 414

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRARE 247
                 ++I  +    L  +A+ VF+ M    + P    Y  II  +G+C   N+ +A  
Sbjct: 415 ------ALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVII--HGHCRGGNLPKAFN 466

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
           ++ E+   G      T+  +++A    G+  E
Sbjct: 467 LYKEMIHSGFVPHTVTVITLIKALFKEGMNEE 498


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 147/322 (45%), Gaps = 5/322 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I+   K  Q   A  +F  MR+ G  PD   YN +I   L +R K +   + 
Sbjct: 130 DVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMI-GSLCSRGKLELAFEV 188

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +    K    + CKP+++TY IL+ A      +++   LF EL    L PD+YTYN ++ 
Sbjct: 189 MDELLK----DGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIR 244

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K GM       +  + +  C PD++++N+L+ S+  +  ++  E++ K ++ S  +P
Sbjct: 245 GICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEP 304

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T + +I ++ +     +A  V + M     TP   +Y+ +I+ +     +  A E  
Sbjct: 305 NVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYL 364

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +++   G    +   N +L   C  G    A  +FE    +G  P    Y  ++ A    
Sbjct: 365 EKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSC 424

Query: 310 NMKELVQKLLKRMEQNGIVPNK 331
             K    +++  M + GI P++
Sbjct: 425 GNKIKALEMISEMIRKGIDPDE 446



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 149/326 (45%), Gaps = 5/326 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI     +G+   A+ LF E+ + G RPD   YNA+I        + +AL      F
Sbjct: 204 YTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALD-----F 258

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +      C P++V+YNILLR+       +    L K++  S   P++ T++ ++ ++ +
Sbjct: 259 VRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCR 318

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++E  +VL  MK     PD  +++ LI ++ K    D   +  + ++     P +  
Sbjct: 319 EGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVN 378

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N+++    K      A  VF+K+  +   P+   Y  + +    C N  +A E+  E+ 
Sbjct: 379 YNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMI 438

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G D    T N+++   C +GL  EA  L  +       P   ++ ++     KA+   
Sbjct: 439 RKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVF 498

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALE 339
              +LL  M + G +PN+  ++  +E
Sbjct: 499 EGIELLITMVEKGCLPNETSYVLLIE 524



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 159/323 (49%), Gaps = 22/323 (6%)

Query: 16  KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQK 75
           KL+    + G+   +++    + + G +PD  +   LI    ++R+  KA+       + 
Sbjct: 67  KLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAM-------RV 119

Query: 76  MKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           M+ +E    P++ +YN ++   ++A  +D  N +F  +     +PD+ TYN ++ +    
Sbjct: 120 MEILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSR 179

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G ++    V+  +  + CKP +IT+ +LI++       ++  ++F  L+    +P L T+
Sbjct: 180 GKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTY 239

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N++I    K  ++ +A    + ++A    P  ++Y  ++  +     ++++R  +++  +
Sbjct: 240 NAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSF-----LNKSR--WEDGER 292

Query: 255 LGKDMKVS-------TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           L KDM +S       T + ++ ++C  G   EA  + E     G+TPDS +Y  L  A+ 
Sbjct: 293 LMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFC 352

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           K    +L  + L++M  +G +P+
Sbjct: 353 KEGRLDLAIEYLEKMVSDGCLPD 375



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 94/200 (47%), Gaps = 10/200 (5%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           + K++    D+  Y  LI+   K+G+  LA+    +M + GC PD   YN +    L T 
Sbjct: 331 VMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTI----LATL 386

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K      AL  F+K+  +  C P +  YN +  A     N  +   +  E+    + PD
Sbjct: 387 CKFGCADLALDVFEKLDEVG-CPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPD 445

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-RQAFDKMEQVF 179
             TYN ++    ++G++ E   +L  M++ + +P +I+FN+++    K  + F+ +E   
Sbjct: 446 EITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIEL-- 503

Query: 180 KSLMHSKEKPTLPTFNSMII 199
             L+   EK  LP   S ++
Sbjct: 504 --LITMVEKGCLPNETSYVL 521


>gi|410110079|gb|AFV61119.1| pentatricopeptide repeat-containing protein 123, partial [Junellia
           succulentifolia]
          Length = 382

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 131/277 (47%), Gaps = 5/277 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YNA+I        KAK    
Sbjct: 3   GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVF----GKAKLFRD 58

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +M+      PN  +Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 59  ARSLISEMR-TAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMI 117

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +     +
Sbjct: 118 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIE 177

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSM++ YGK     KA  + Q+M      P+ ITY  II+++G    + RA  +
Sbjct: 178 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAML 237

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
           F +L   G D+       M+ AY   GL   A  L  
Sbjct: 238 FQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLH 274



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 153/331 (46%), Gaps = 15/331 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  ++ D   Y+ +I V GK    R A  L SEMR +G  P+ + Y+ L+T ++     
Sbjct: 32  KRSGFMPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVTPNTASYSTLLTMYVEN--- 88

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   +AL  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ 
Sbjct: 89  -KKFLEALSVFAEMREI-KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 146

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++  YG   +  E   +   M+    + +++T+N ++  YGK    +K   + + +
Sbjct: 147 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 206

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
            +   +P   T++++I  +GK     +A  +FQK+ +       + Y+ +I  Y     V
Sbjct: 207 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLV 266

Query: 243 SRAREIFDELSK---LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           + A+ +  EL +   + +D+ +  L          G   EA  +F  + + G   D + +
Sbjct: 267 AHAKRLLHELKRPDNIPRDIAIHILAGA-------GRIEEATWVFRQAIDAGXVKDITVF 319

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + +   ++K      V ++  +M   G  P+
Sbjct: 320 ERMIHLFSKYKKYGNVVEVFDKMRGLGYFPD 350



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 129/263 (49%), Gaps = 1/263 (0%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +KA+  F ++K      P++V YN ++    +A+      +L  E+  + + P+  +Y+ 
Sbjct: 22  SKAISIFSRLK-RSGFMPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVTPNTASYST 80

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y +N    E  SV + M+  +C  D+ T N++ID YG+     + +++F  +    
Sbjct: 81  LLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG      +A 
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G +    T + ++  +   G    A +LF+   + GV  D   Y+ +  AY
Sbjct: 201 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAY 260

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            +A +    ++LL  +++   +P
Sbjct: 261 ERAGLVAHAKRLLHELKRPDNIP 283



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 116/243 (47%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           ++V Y+ L+    +  +  +  ++F  L  S   PD+  YN +++ +GK  + ++  S++
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFRDARSLI 63

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
           S M++    P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+ 
Sbjct: 64  SEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
            +  +A+ +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T 
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N+M+  Y       +A+ L +   N G+ P+S TY  +   + K    +    L +++  
Sbjct: 184 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 243

Query: 325 NGI 327
           +G+
Sbjct: 244 SGV 246



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 84/176 (47%)

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           D++ ++ LI+   K   + K   +F  L  S   P L  +N+MI  +GKA+L   A  + 
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFRDARSLI 63

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
            +M     TP+  +Y  ++TMY        A  +F E+ ++   + ++T N M++ Y   
Sbjct: 64  SEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           G+  EAD LF     MG+ P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 179



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 85/189 (44%)

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           S+ SR+K +   PD++ +N +I+ +GK + F     +   +  +   P   ++++++  Y
Sbjct: 26  SIFSRLKRSGFMPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVTPNTASYSTLLTMY 85

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            + +   +A  VF +M  +K      T   +I +YG       A ++F  + K+G +  V
Sbjct: 86  VENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 145

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            + N +L  Y    L  EA  LF       +  +  TY  +   Y K    E    L++ 
Sbjct: 146 VSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQE 205

Query: 322 MEQNGIVPN 330
           M+  GI PN
Sbjct: 206 MQNRGIEPN 214


>gi|22330179|ref|NP_683419.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
 gi|75216707|sp|Q9ZU27.1|PPR76_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g51965, mitochondrial; Flags: Precursor
 gi|4220445|gb|AAD12672.1| Similar to gi|3004555 F19F24.14 salt inducible protein homolog from
           Arabidopsis thaliana BAC gb|AC003673 [Arabidopsis
           thaliana]
 gi|332194619|gb|AEE32740.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
          Length = 650

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 146/332 (43%), Gaps = 29/332 (8%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNAL------------------ITA 55
           Y+ L+ V+ K      A+ +FS M  +GCRP+   Y+ L                  I+ 
Sbjct: 308 YNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISK 367

Query: 56  HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI----------LLRACAQARNVDQV 105
              T+     L + L     +    R   ++ ++ +          L   C   + ++ +
Sbjct: 368 RYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAI 427

Query: 106 NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
             L K +HE  +  D   YN V  A GK   I  +  +  +MK +   PDI T+N+LI S
Sbjct: 428 EMLSK-IHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIAS 486

Query: 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
           +G+    D+   +F+ L  S  KP + ++NS+I   GK     +A   F++M      P 
Sbjct: 487 FGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPD 546

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
            +TY  ++  +G  + V  A  +F+E+   G    + T N +L+    NG   EA  L+ 
Sbjct: 547 VVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYS 606

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
                G+TPDS TY +L +  + ++ K  +++
Sbjct: 607 KMKQQGLTPDSITYTVLERLQSVSHGKSRIRR 638



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 110/210 (52%), Gaps = 9/210 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++  + DT +Y+ + + +GK  Q      LF +M+  G  PD   YN LI +      + 
Sbjct: 435 EKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASF----GRV 490

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             + +A+  F++++  + CKP+I++YN L+    +  +VD+ +  FKE+ E  L PD+ T
Sbjct: 491 GEVDEAINIFEELERSD-CKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVT 549

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ +M+ +GK   ++   S+   M    C+P+I+T+N+L+D   K     +   ++  + 
Sbjct: 550 YSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMK 609

Query: 184 HSKEKPTLPTFNSM----IINYGKARLQGK 209
                P   T+  +     +++GK+R++ K
Sbjct: 610 QQGLTPDSITYTVLERLQSVSHGKSRIRRK 639



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 145/330 (43%), Gaps = 12/330 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+R    D   Y+ +I  MG+ G+   A+ LF+EM   G   +   YN L    +    K
Sbjct: 262 KKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTL----MQVLAK 317

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K + KA+  F +M     C+PN  TY++LL        + +++ +  E+ +  +   IY
Sbjct: 318 GKMVDKAIQVFSRMVETG-CRPNEYTYSLLLNLLVAEGQLVRLDGVV-EISKRYMTQGIY 375

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY-GKRQAFDKMEQVFKS 181
           +Y  ++    K G + E   +   M S   K +  ++  +++S  G  +  + +E + K 
Sbjct: 376 SY--LVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSK- 432

Query: 182 LMHSKEKPT-LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +H K   T    +N++    GK +       +F+KM     +P   TY  +I  +G   
Sbjct: 433 -IHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVG 491

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            V  A  IF+EL +      + + N+++     NG   EA + F+     G+ PD  TY 
Sbjct: 492 EVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYS 551

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            L + + K    E+   L + M   G  PN
Sbjct: 552 TLMECFGKTERVEMAYSLFEEMLVKGCQPN 581



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/325 (20%), Positives = 134/325 (41%), Gaps = 46/325 (14%)

Query: 47  SVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC---------KPNIVTYNILLRACA 97
           S+ ++++ +++H       +   +G+F   + ++ C         K N  TY  LL+A  
Sbjct: 157 SILDSMVKSNVH--GNISTVNILIGFFGNTEDLQMCLRLVKKWDLKMNSFTYKCLLQAYL 214

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           ++R+  +   ++ E+       DI+ YN ++DA  K+   ++   V   MK   C+ D  
Sbjct: 215 RSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDALAKD---EKACQVFEDMKKRHCRRDEY 271

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           T+ ++I + G+    D+   +F  ++       +  +N+++    K ++  KA  VF +M
Sbjct: 272 TYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRM 331

Query: 218 TAMKYTPSFITYECIITM-------------------------YGY-------CDNVSRA 245
                 P+  TY  ++ +                         Y Y         +VS A
Sbjct: 332 VETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQGIYSYLVRTLSKLGHVSEA 391

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             +F ++       +  +  +MLE+ C  G   EA  +    H  GV  D+  Y  ++ A
Sbjct: 392 HRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSA 451

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
             K      +  L ++M+++G  P+
Sbjct: 452 LGKLKQISHIHDLFEKMKKDGPSPD 476



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 137/347 (39%), Gaps = 40/347 (11%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A  ++ E+R  G + D   YN L+ A    +D+     KA   F+ MK    C+ +  TY
Sbjct: 222 AFDVYCEIRRGGHKLDIFAYNMLLDAL--AKDE-----KACQVFEDMKK-RHCRRDEYTY 273

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
            I++R   +    D+   LF E+    L  ++  YN +M    K  M+ +   V SRM  
Sbjct: 274 TIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVE 333

Query: 150 NQCKPDIITFNLLID---SYGKRQAFDKMEQVFKSLM----------------HSKEKPT 190
             C+P+  T++LL++   + G+    D + ++ K  M                H  E   
Sbjct: 334 TGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQGIYSYLVRTLSKLGHVSEAHR 393

Query: 191 L-------------PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           L              ++ SM+ +   A    +A  +  K+         + Y  + +  G
Sbjct: 394 LFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALG 453

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
               +S   ++F+++ K G    + T N ++ ++   G   EA  +FE        PD  
Sbjct: 454 KLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDII 513

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           +Y  L     K    +      K M++ G+ P+   +   +E F  +
Sbjct: 514 SYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKT 560


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 144/319 (45%), Gaps = 5/319 (1%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R+   D   Y  ++  + K  +   A+    EM   G +PD  +YN +++  L   +K +
Sbjct: 3   RYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSG-LCQEEKVE 61

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
              +A   F+KM   +R  PN+VTYN L+    +A  ++    LFKE+      P   +Y
Sbjct: 62  ---EARLLFEKMV-KQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSY 117

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++D + K   +   + V  +M  + C P+++T+  LID   K        +V   ++ 
Sbjct: 118 NTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVK 177

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P + T++ +I  + K R   +A  + ++M      P+ +TY  ++      D +  
Sbjct: 178 KGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLED 237

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A ++F  +++      V T N +L A C +     A  L+      G  PD+ TY  L  
Sbjct: 238 AFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAW 297

Query: 305 AYTKANMKELVQKLLKRME 323
             T+A      Q+L+++M+
Sbjct: 298 GLTRAGKVHEAQELMEKMK 316



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 111/247 (44%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+ +TY  ++    + + +D   A  +E+    + PD + YN V+    +   ++E   +
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
             +M   +  P+++T+N LI+   K    +   ++FK +      PT  ++N++I  + K
Sbjct: 67  FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCK 126

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
            +    A+ VF KM      P+ +TY  +I        V  A E+ D + K G    V+T
Sbjct: 127 KKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVAT 186

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            + +++ +C      EA  L E     G+ P   TY +L  +  +A+  E   KL + M 
Sbjct: 187 YSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMA 246

Query: 324 QNGIVPN 330
           Q    P 
Sbjct: 247 QRRCHPT 253



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 123/290 (42%), Gaps = 11/290 (3%)

Query: 44  PDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARN 101
           PD   Y  ++        K K +  AL   ++M  +G+   KP+   YN +L    Q   
Sbjct: 7   PDALTYGPIVERLC----KTKRIDDALATVEEMATRGI---KPDAFIYNFVLSGLCQEEK 59

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
           V++   LF+++ +  + P++ TYN +++   K   I+    +   M      P  +++N 
Sbjct: 60  VEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNT 119

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA-RLQGKAEYVFQKMTAM 220
           LID + K++     + VF  ++ S   P + T+ ++I    K+ ++Q  AE V   M   
Sbjct: 120 LIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAE-VLDGMVKK 178

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
             TP+  TY C+I  +     V  A ++ +++   G    V T N +L + C      +A
Sbjct: 179 GVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDA 238

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             LF         P   TY  L +A       +   +L   M   G  P+
Sbjct: 239 FKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPD 288



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           + Y+     Y+ LI    KK     A  +F +M  S C P+   Y  LI   L    K +
Sbjct: 108 KGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDG-LSKSGKVQ 166

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           A A+ L    K KG+    PN+ TY+ L+    + R VD+ + L +++    +AP + TY
Sbjct: 167 AAAEVLDGMVK-KGV---TPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTY 222

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++++  +   +++   +   M   +C P ++T+N L+ +    +  D   +++  ++ 
Sbjct: 223 NILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIA 282

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 224
               P   T++++     +A    +A+ + +KM   K  P
Sbjct: 283 KGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKRNP 322



 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 44/118 (37%)

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
           P  +TY  I+        +  A    +E++  G        N +L   C      EA LL
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           FE      + P+  TY  L     KA   E   +L K M   G VP +  +   ++ F
Sbjct: 67  FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGF 124


>gi|115435438|ref|NP_001042477.1| Os01g0228400 [Oryza sativa Japonica Group]
 gi|17385740|dbj|BAB78680.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|113532008|dbj|BAF04391.1| Os01g0228400 [Oryza sativa Japonica Group]
 gi|215740499|dbj|BAG97155.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 636

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 160/337 (47%), Gaps = 12/337 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+A +  +       WL +E+ ++G RPD   +NALI A +    +A+ + +A   F
Sbjct: 117 YTTLLAALTSQRAFDTIPWLLAEVEDAGLRPDSIFFNALINALV----EARRMGEATNTF 172

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL------HESILAPDIYTYNGV 127
            +M G   C+P   T+N L++    A   ++   +F  +       E+ + P++ TYN +
Sbjct: 173 LRM-GHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGGAGGEAAVRPNLTTYNIL 231

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-QAFDKMEQVFKSLMHSK 186
           + A+   G ++E   V++RM+++   PD++T+N L  +Y K  + +   E V +    + 
Sbjct: 232 VKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDETWRAEELVVEMAQQAG 291

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            + +  T+  ++  Y +    G+A    ++M      P+ I +  ++  +   ++++   
Sbjct: 292 LRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFNTLLKGFLDANDMAAVD 351

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           ++   + + G    + T +  L A    G   +   +F+     G+ PD   Y +L K Y
Sbjct: 352 DVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGY 411

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
            +A   E  ++LL++M + G+ PN   F   +  + S
Sbjct: 412 VRAQQPEKAEELLRQMGRLGVRPNVVTFTTVISGWCS 448



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 117/268 (43%), Gaps = 7/268 (2%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P++VTY  LL A    R  D +  L  E+ ++ L PD   +N +++A  +   + E  +
Sbjct: 111 RPSLVTYTTLLAALTSQRAFDTIPWLLAEVEDAGLRPDSIFFNALINALVEARRMGEATN 170

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE------KPTLPTFNS 196
              RM  + C+P   TFN LI  YG     ++ ++VF  +           +P L T+N 
Sbjct: 171 TFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGGAGGEAAVRPNLTTYNI 230

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS-KL 255
           ++  +  A    +A  V  +M A    P  +TY  + + Y   D   RA E+  E++ + 
Sbjct: 231 LVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDETWRAEELVVEMAQQA 290

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
           G      T   ++  YC  G   EA        + GV P+   +  L K +  AN    V
Sbjct: 291 GLRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFNTLLKGFLDANDMAAV 350

Query: 316 QKLLKRMEQNGIVPNKRFFLEALETFSS 343
             +L  MEQ GI P+   +   L   SS
Sbjct: 351 DDVLGLMEQFGIKPDIVTYSHQLNALSS 378



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 111/256 (43%), Gaps = 7/256 (2%)

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +RA   AR   Q ++ F+ L +    P + TY  ++ A         +  +L+ ++    
Sbjct: 86  MRAMIDARRPHQAHSAFRHLVDDGHRPSLVTYTTLLAALTSQRAFDTIPWLLAEVEDAGL 145

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           +PD I FN LI++  + +   +    F  + HS  +PT  TFN++I  YG A    +++ 
Sbjct: 146 RPDSIFFNALINALVEARRMGEATNTFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQR 205

Query: 213 VFQKMTAMKYT------PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
           VF  M +          P+  TY  ++  +     +  A  +   +   G D  V T N 
Sbjct: 206 VFDMMASGGAGGEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNT 265

Query: 267 MLEAYCMNGLPTEA-DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
           +  AY  N     A +L+ E +   G+     T+ ++   Y +        + +++M+ +
Sbjct: 266 LASAYAKNDETWRAEELVVEMAQQAGLRTSERTWGIIVGGYCREGRLGEALRCVRQMKDS 325

Query: 326 GIVPNKRFFLEALETF 341
           G++PN   F   L+ F
Sbjct: 326 GVLPNVIVFNTLLKGF 341



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/302 (19%), Positives = 135/302 (44%), Gaps = 8/302 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD--KAKALAKALG 71
           Y+ L+      G+   A  + + MR SG  PD   YN L +A+    +  +A+ L   + 
Sbjct: 228 YNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDETWRAEELVVEMA 287

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
               ++  ER      T+ I++    +   + +     +++ +S + P++  +N ++  +
Sbjct: 288 QQAGLRTSER------TWGIIVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFNTLLKGF 341

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
                +  ++ VL  M+    KPDI+T++  +++        K  +VF  ++ +  +P  
Sbjct: 342 LDANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDP 401

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             ++ +   Y +A+   KAE + ++M  +   P+ +T+  +I+ +    ++  A  ++  
Sbjct: 402 QVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPNVVTFTTVISGWCSVADMGNAVRVYAA 461

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G    + T   ++  Y     P +A+ + +   + GV P  +TY L+  A+    +
Sbjct: 462 MRDAGVRPNLRTFETLIWGYSELKQPWKAEEVLQMMQDAGVRPKQTTYCLVADAWKAVGL 521

Query: 312 KE 313
            E
Sbjct: 522 VE 523


>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
          Length = 665

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 161/367 (43%), Gaps = 41/367 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I   G  G  + A+ L  +M  +G  PD   +N +++A    ++ A+  +KA+ YF
Sbjct: 84  YNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSA---LKNGAQ-YSKAISYF 139

Query: 74  QKMKGME------------------------------------RCKPNIVTYNILLRACA 97
           + MKG                                      +C P++VTY  ++ +  
Sbjct: 140 EIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYC 199

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
               V+   A+F  +    + P+I  YN ++ AY   GM +E  ++ + +K N  +PDI+
Sbjct: 200 IYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIV 259

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           ++  L+++YG+    +K  +VF  +  +  KP   ++N++I  YG A +  +A  +  +M
Sbjct: 260 SYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEM 319

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
                 P  ++   ++   G C  ++R   I +     G D+     N+ +++Y   G  
Sbjct: 320 EKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDY 379

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL-E 336
            +A  L+ +     V PD+ TY +L    +K        +  + M  + +   K   L E
Sbjct: 380 EKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEGKLSE 439

Query: 337 ALETFSS 343
           A  TFSS
Sbjct: 440 AESTFSS 446



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 144/334 (43%), Gaps = 11/334 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+ Q  Y A   IY  +I +  +  Q   A  LF EM+   C+PD  +YN+LI  H H+R
Sbjct: 1   MKNQDNYCARNDIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLI--HAHSR 58

Query: 61  DKAKALAKALGYFQKMKGMERCK--PNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
                 A        M+ M R    P   TYN ++ AC  A N  +   L K++ E+ + 
Sbjct: 59  AGQWRWA-----INIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVG 113

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD+ T+N V+ A        +  S    MK      D  T N++I    K     +  ++
Sbjct: 114 PDLVTHNIVLSALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIEL 173

Query: 179 FKSLMHSKEK--PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           F S+   + K  P + T+ S++ +Y         + +F  M A    P+ + Y  ++  Y
Sbjct: 174 FNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAY 233

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                   A  IF+ + K G    + +  ++L AY  +  P +A  +F         P+ 
Sbjct: 234 ASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNK 293

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +Y  L  AY  A M +    LL  ME++GI P+
Sbjct: 294 VSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPD 327



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 158/364 (43%), Gaps = 40/364 (10%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN--SGCRPDPSVYNALITAHLHTRDKAKAL 66
           +DT   + +I  + K GQ   A+ LF+ MR   + C PD   Y    T+ +H+      +
Sbjct: 149 SDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTY----TSIMHSYCIYGQV 204

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
                 F  M   E  KPNIV YN LL A A      +  A+F  + ++ L PDI +Y  
Sbjct: 205 ENCKAIFDLMVA-EGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTS 263

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++AYG++   ++   V ++MK N CKP+ +++N LID+YG      +   +   +    
Sbjct: 264 LLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDG 323

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + + ++++   G+ R   + E + +   +     + + Y   I  Y    +  +A 
Sbjct: 324 IQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKAL 383

Query: 247 EIFDEL-------------------SKLGK---------DMKVSTLNAMLEAYCMNGLPT 278
           E++  +                   SKLGK         DM  S +++  E     G  +
Sbjct: 384 ELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKE-----GKLS 438

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           EA+  F +    G  PD  TY  L +AY      +    L K ME NGI P+       +
Sbjct: 439 EAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLM 498

Query: 339 ETFS 342
           E F+
Sbjct: 499 EAFN 502



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 153/333 (45%), Gaps = 29/333 (8%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+     +G  R A+ +F+ ++ +G RPD   Y +L+ A+     ++    KA   F
Sbjct: 226 YNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAY----GRSAQPEKAREVF 281

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KMK    CKPN V+YN L+ A   A  + +   L  E+ +  + PD+ + + ++ A G+
Sbjct: 282 NKMKK-NSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGR 340

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              I  +E++L   +S     + + +N  I SY     ++K  +++ S+  S  KP   T
Sbjct: 341 CRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVT 400

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII------TMYGYCDNVSRARE 247
           +N +I   G ++L              KYT S   +E ++      T  G    +S A  
Sbjct: 401 YNILI--SGSSKLG-------------KYTESLRFFEDMVDSKVSSTKEG---KLSEAES 442

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
            F  + K G    V T   +++AY   G    A  LF+     G+ PD+     L +A+ 
Sbjct: 443 TFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEAFN 502

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALET 340
           K    E V +L++ M++  I  N++ + E + +
Sbjct: 503 KGGEPERVLQLMEFMKKKSIPLNQKSYFEIIAS 535



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 126/279 (45%), Gaps = 3/279 (1%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A G F +M+   RCKP+   YN L+ A ++A        + +++  + + P   TYN V
Sbjct: 29  QARGLFFEMQEW-RCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNV 87

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++A G  G  K+   +  +M  N   PD++T N+++ +      + K    F+ +  +  
Sbjct: 88  INACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMKGANV 147

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTA--MKYTPSFITYECIITMYGYCDNVSRA 245
                T N +I    K    G+A  +F  M     K  P  +TY  I+  Y     V   
Sbjct: 148 TSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENC 207

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           + IFD +   G    +   N++L AY   G+  EA  +F      G+ PD  +Y  L  A
Sbjct: 208 KAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNA 267

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           Y ++   E  +++  +M++N   PNK  +   ++ + S+
Sbjct: 268 YGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSA 306



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 94/231 (40%), Gaps = 26/231 (11%)

Query: 25  GQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH-------------------TRDKAKA 65
           G    A+ L++ MR S  +PD   YN LI+                       +  K   
Sbjct: 377 GDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEGK 436

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L++A   F  MK    C P+++TY  L++A        +   LFKE+  + + PD    +
Sbjct: 437 LSEAESTFSSMKK-SGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICS 495

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +M+A+ K G  + +  ++  MK      +  ++  +I S    + +    ++ + L  S
Sbjct: 496 SLMEAFNKGGEPERVLQLMEFMKKKSIPLNQKSYFEIIASCTMIRDWKTASEMIEYLDSS 555

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEY---VFQKMTAMKYTPSFITYECII 233
               ++ T N ++   GK    GK E    +F KM     T    TY  ++
Sbjct: 556 LSSISVGTLNHVLNFLGKC---GKTENMMKLFYKMVTSCSTVGLSTYAVVL 603


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 150/315 (47%), Gaps = 9/315 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  L+  + K G+TR A+ L   + +   RPD  +YN +I        K K + +A  ++
Sbjct: 240 YGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLC----KDKLVNEAYDFY 295

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M       P+++TY+ L+     A  +    +L  E+    + PD+YTY  ++DA  K
Sbjct: 296 TEMNS-RGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCK 354

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +KE +++L  M     KP+++T++ L+D Y         +Q+F +++ ++  P++ +
Sbjct: 355 EGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCS 414

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDE 251
           +N MI    K +   +A  + ++M      P+ +TY  +I   G C +  ++ A ++  E
Sbjct: 415 YNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLID--GLCKSGRITSALDLMKE 472

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           L   G+   V T  ++L+  C N    +A  LF      G+ P+  TY  L     K   
Sbjct: 473 LHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGAR 532

Query: 312 KELVQKLLKRMEQNG 326
            +  QKL + +   G
Sbjct: 533 LKNAQKLFQHILVKG 547



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 141/334 (42%), Gaps = 9/334 (2%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R    D   YS LI      GQ   A  L +EM      PD   Y  LI A L    K K
Sbjct: 301 RGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDA-LCKEGKLK 359

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
                LG   K    E  KPN+VTY+ L+        V     +F  + ++ + P + +Y
Sbjct: 360 EAKNLLGVMTK----EGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSY 415

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N +++   K   + E  ++L  M      P+ +T+N LID   K         + K L H
Sbjct: 416 NIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHH 475

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--V 242
             +   + T+ S++    K +   KA  +F KM      P+  TY  +I   G C    +
Sbjct: 476 RGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALID--GLCKGARL 533

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A+++F  +   G  + V T N M+   C  G+  EA  +     + G  PD+ T++++
Sbjct: 534 KNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEII 593

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
            ++  + +  +  +KLL  M   G++  + F  E
Sbjct: 594 IRSLFEKDENDKAEKLLHEMIAKGLLHFRNFHGE 627



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 141/327 (43%), Gaps = 9/327 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  +T I + L+  +  KG+ + ++    ++   G + +   Y  L+   L    + +  
Sbjct: 198 YQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNG-LCKIGETRCA 256

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            K L    +M      +P++V YN ++    + + V++    + E++   + PD+ TY+ 
Sbjct: 257 IKLL----RMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYST 312

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  +   G +    S+L+ M      PD+ T+ +LID+  K     + + +   +    
Sbjct: 313 LICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEG 372

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSR 244
            KP + T+++++  Y        A+ +F  M   +  PS  +Y  +I   G C   +V  
Sbjct: 373 VKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMIN--GLCKGKSVDE 430

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  +  E+          T N++++  C +G  T A  L +  H+ G   D  TY  L  
Sbjct: 431 AMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLD 490

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNK 331
              K    +    L  +M++ GI PNK
Sbjct: 491 GLCKNQNLDKAIALFMKMKERGIQPNK 517



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 131/316 (41%), Gaps = 23/316 (7%)

Query: 27  TRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA--KALAKALGYFQKMKGMERCKP 84
           TR  MWL S + +S     P + N     + H++  +    +  A+  F  M  M R  P
Sbjct: 72  TRPLMWLSSSLSHSIPNFPPFLPNPTFPFYFHSQPPSIHDVVHDAVSQFNGMLLM-RNTP 130

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           +I+ +  +L +  + ++     +L K++    + PD+ T + +++ +   G +    SVL
Sbjct: 131 SIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSVL 190

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
            ++     +P+ I    L+     +       +V KSL H  +K     F    ++YG  
Sbjct: 191 GKILKLGYQPNTIILTTLMKGLCLKG------EVKKSL-HFHDKVVAQGFQMNQVSYG-T 242

Query: 205 RLQG-------KAEYVFQKMTAMKYT-PSFITYECIITMYGYCDN--VSRAREIFDELSK 254
            L G       +      +M   + T P  + Y  II   G C +  V+ A + + E++ 
Sbjct: 243 LLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIID--GLCKDKLVNEAYDFYTEMNS 300

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
            G    V T + ++  +C+ G    A  L        + PD  TY +L  A  K    + 
Sbjct: 301 RGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKE 360

Query: 315 VQKLLKRMEQNGIVPN 330
            + LL  M + G+ PN
Sbjct: 361 AKNLLGVMTKEGVKPN 376


>gi|410110129|gb|AFV61144.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           pusilla]
          Length = 381

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 5/297 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YNA+I        KAK   +
Sbjct: 3   GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFRE 58

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +MK      PN  +Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 59  ARSLISEMK-TAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMI 117

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +     +
Sbjct: 118 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIE 177

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSM++ YGK     KA  + Q+M +    P+ ITY  II+++G    + RA  +
Sbjct: 178 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAML 237

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           F +L   G ++       M+  Y   GL   A  L          P  +   +L  A
Sbjct: 238 FQKLRSTGVEIDQILFQTMIVXYERAGLIAHAKRLLHELKRPDNIPRDTAIHILAGA 294



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 148/323 (45%), Gaps = 19/323 (5%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEM+ +G  P+ + Y+ L+T ++     
Sbjct: 32  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVEN--- 88

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   +AL  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ 
Sbjct: 89  -KKFLEALSVFSEMREI-KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 146

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++  YG   +  E   +   M+    + +++T+N ++  YGK    +K   + + +
Sbjct: 147 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 206

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P   T++++I  +GK     +A  +FQK+ +       I ++ +I  Y     +
Sbjct: 207 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVXYERAGLI 266

Query: 243 SRAREIFDELSK---LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           + A+ +  EL +   + +D  +  L          G   EA  +F  + + G   D + +
Sbjct: 267 AHAKRLLHELKRPDNIPRDTAIHILAGA-------GRIEEATYVFRQAIDAGEVKDITVF 319

Query: 300 K----LLYKAYTKANMKELVQKL 318
           +    LL K    AN+ E+  K+
Sbjct: 320 ERMIHLLSKYKKYANVVEVFDKM 342



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 129/263 (49%), Gaps = 1/263 (0%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +KA+  F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  +Y+ 
Sbjct: 22  SKAISIFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 80

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +    
Sbjct: 81  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG      +A 
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G +    T + ++  +   G    A +LF+   + GV  D   ++ +   Y
Sbjct: 201 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVXY 260

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            +A +    ++LL  +++   +P
Sbjct: 261 ERAGLIAHAKRLLHELKRPDNIP 283



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 118/250 (47%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           ++V Y+ L+    +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  S++
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
           S MK+    P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+ 
Sbjct: 64  SEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 123

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
            +  +A+ +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T 
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N+M+  Y       +A+ L +   + G+ P+S TY  +   + K    +    L +++  
Sbjct: 184 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 243

Query: 325 NGIVPNKRFF 334
            G+  ++  F
Sbjct: 244 TGVEIDQILF 253



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 112/271 (41%), Gaps = 36/271 (13%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           +I V G+ G  + A  LF  MR  G  P+   YN L+  +      A+   +A+  F+ M
Sbjct: 116 MIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY----GDAELFGEAIHLFRLM 171

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +  +  + N+VTYN ++    +    ++ N L +E+    + P+  TY+ ++  +GK G 
Sbjct: 172 Q-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGK 230

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSY--------GKRQAFD--------------- 173
           +     +  +++S   + D I F  +I  Y         KR   +               
Sbjct: 231 LDRAAMLFQKLRSTGVEIDQILFQTMIVXYERAGLIAHAKRLLHELKRPDNIPRDTAIHI 290

Query: 174 -----KMEQ---VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
                ++E+   VF+  + + E   +  F  MI    K +       VF KM  + Y P 
Sbjct: 291 LAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPD 350

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLG 256
                 ++  YG      +A +++ E+ ++G
Sbjct: 351 SNVIAVVLNAYGKLQEFDKANDVYMEMQEVG 381


>gi|297816088|ref|XP_002875927.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321765|gb|EFH52186.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 657

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 142/307 (46%), Gaps = 5/307 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI  +   GQ  LA  L ++M   GC P+    ++L+           AL     + 
Sbjct: 283 YSTLINELSNSGQIELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRGTTFDALDM---WN 339

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           Q ++G    +PN+V YN L++      N+D+  ++F  + E   +P+I TY  +++ + K
Sbjct: 340 QMIRGFGL-QPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTK 398

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++    + ++M ++ C P+++ +  ++++  +   F + E + + +      P++PT
Sbjct: 399 RGSLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPT 458

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAM-KYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           FN+ I     A     AE VF++M    +  P+ +TY  ++      + +  A  +  E+
Sbjct: 459 FNAFIKGLCDAGRLDWAEKVFRQMEQQYRCPPNIVTYNELLDGLAKANRIEEAYGLTREI 518

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G +   ST N +L   C  GLP  A  L       G +PD  T  ++  AY K    
Sbjct: 519 FMRGVEWSTSTYNTLLHGSCNAGLPGIALQLVGKMMVNGKSPDEITMNMIILAYCKQGKA 578

Query: 313 ELVQKLL 319
           E   ++L
Sbjct: 579 ERAVQML 585



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 139/319 (43%), Gaps = 15/319 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLHTRDKAKALAKALG 71
           Y+ L+  + K  +   A  L  EM N GC P+   Y  +I++   +    + + LA    
Sbjct: 183 YNVLLKALCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTVISSMCEVGMVKEGRQLA---- 238

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
                   ER +P +  YN L+    + R+      L  E+ E  ++P++ +Y+ +++  
Sbjct: 239 --------ERFEPVVSVYNALINGLCKERDYKGGVELMSEMVEKGISPNVISYSTLINEL 290

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLI-DSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             +G I+   S+L++M    C P+I T + L+   + +   FD ++   + +     +P 
Sbjct: 291 SNSGQIELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRGTTFDALDMWNQMIRGFGLQPN 350

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           +  +N+++  +       KA  VF  M  +  +P+  TY  +I  +    ++  A  I++
Sbjct: 351 VVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWN 410

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           ++   G    V    +M+EA C +    EA+ L E        P   T+    K    A 
Sbjct: 411 KMLTSGCCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAG 470

Query: 311 MKELVQKLLKRMEQNGIVP 329
             +  +K+ ++MEQ    P
Sbjct: 471 RLDWAEKVFRQMEQQYRCP 489



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/335 (20%), Positives = 141/335 (42%), Gaps = 21/335 (6%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           ++  +I+V  + G    A+ +F  ++  GC P   +YN       H  D      +    
Sbjct: 112 LFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYN-------HVLDTLLGENRIQMI 164

Query: 73  FQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           +   + M+R   +PN+ TYN+LL+A  +   VD    L  E+      P+  +Y  V+ +
Sbjct: 165 YMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTVISS 224

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             + GM+KE   +  R +     P +  +N LI+   K + +    ++   ++     P 
Sbjct: 225 MCEVGMVKEGRQLAERFE-----PVVSVYNALINGLCKERDYKGGVELMSEMVEKGISPN 279

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAM---KYTPSFITYECIITMYGYCDNVSRARE 247
           + +++++I     +   G+ E  F  +  M      P+  T   ++           A +
Sbjct: 280 VISYSTLINELSNS---GQIELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRGTTFDALD 336

Query: 248 IFDELSK-LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           +++++ +  G    V   N +++ +C +G   +A  +F +   +G +P+  TY  L   +
Sbjct: 337 MWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGF 396

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           TK    E    +  +M  +G  PN   +   +E  
Sbjct: 397 TKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMVEAL 431



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 119/284 (41%), Gaps = 8/284 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+      G    A+ +F  M   GC P+   Y +LI        K  +L  A+  +
Sbjct: 354 YNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGF----TKRGSLEGAVYIW 409

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM     C PN+V Y  ++ A  +     +  +L + + +   AP + T+N  +     
Sbjct: 410 NKML-TSGCCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCD 468

Query: 134 NGMIKEMESVLSRMKSN-QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
            G +   E V  +M+   +C P+I+T+N L+D   K    ++   + + +     + +  
Sbjct: 469 AGRLDWAEKVFRQMEQQYRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSTS 528

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N+++     A L G A  +  KM     +P  IT   II  Y       RA ++ D +
Sbjct: 529 TYNTLLHGSCNAGLPGIALQLVGKMMVNGKSPDEITMNMIILAYCKQGKAERAVQMLDLV 588

Query: 253 SKLGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
           S   +  +  V +   ++   C +    +  +LFE   +  + P
Sbjct: 589 SCGRRKWRPDVISYTNVIWGLCRSNCREDGVILFERMISERIIP 632



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/340 (19%), Positives = 148/340 (43%), Gaps = 17/340 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA-KALGY 72
           +  +I  +   GQ     +L  +M+  G      ++ ++I+ +     +   LA +A+  
Sbjct: 78  FEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVY-----RQVGLAERAVEM 132

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F ++K    C P++  YN +L        +  +  +++++      P+++TYN ++ A  
Sbjct: 133 FYRIKEFG-CDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALC 191

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           KN  +   + +L  M +  C P+ +++  +I S  +     +  Q     +  + +P + 
Sbjct: 192 KNNKVDGAKKLLVEMSNKGCCPNAVSYTTVISSMCEVGMVKEGRQ-----LAERFEPVVS 246

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            +N++I    K R       +  +M     +P+ I+Y  +I        +  A  +  ++
Sbjct: 247 VYNALINGLCKERDYKGGVELMSEMVEKGISPNVISYSTLINELSNSGQIELAFSLLAQM 306

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEA-DLLFENSHNMGVTPDSSTYKLLYKAY-TKAN 310
            K G    + TL+++++   + G   +A D+  +     G+ P+   Y  L + + +  N
Sbjct: 307 LKRGCHPNIHTLSSLVKGCFVRGTTFDALDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGN 366

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETFS--SSLAGS 348
           + + V   L  ME+ G  PN R +   +  F+   SL G+
Sbjct: 367 IDKAVSVFL-HMEEIGCSPNIRTYGSLINGFTKRGSLEGA 405



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 77/195 (39%), Gaps = 21/195 (10%)

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFN 195
           IKE  +VL R++   C P  + F                   FKS+ +S   K T  TF 
Sbjct: 40  IKE-SAVLKRLRQESCVPLALHF-------------------FKSIANSNLFKHTPLTFE 79

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
            MI            +Y+ Q+M    +  S   +  +I++Y       RA E+F  + + 
Sbjct: 80  VMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEF 139

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
           G D  V   N +L+            +++ +    G  P+  TY +L KA  K N  +  
Sbjct: 140 GCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGA 199

Query: 316 QKLLKRMEQNGIVPN 330
           +KLL  M   G  PN
Sbjct: 200 KKLLVEMSNKGCCPN 214


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 144/300 (48%), Gaps = 8/300 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           I++ L++    KG+   A  + +EM   GC PD  +Y +LI     T      + +A   
Sbjct: 285 IFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFST----GRVPEARHV 340

Query: 73  FQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           F  M  +E+ C P+ +TY  +++  ++  NV+    + + + +S + PD + YN +MD Y
Sbjct: 341 FDSM--IEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGY 398

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPT 190
            K   + +   V  RM ++  KP+ +TFN+L+    K    D+   +FK ++  +E  PT
Sbjct: 399 VKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPT 458

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           L ++  +I   GKA    +A   FQ+M      P   TY  +I        +  A+++ +
Sbjct: 459 LVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVE 518

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           ++ KLG +  V   +A++     + +   A  +F+     G  P+  TYK+L + +  A 
Sbjct: 519 DMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAG 578



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 139/324 (42%), Gaps = 11/324 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  +    +   A  LF E++ +GC P+   Y A+I   L    KA  +   L  F
Sbjct: 111 YTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLL----KAGRIEDGLKNF 166

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M G   C P   TY +++    +A+ +     +F+++ +    PD  TY  ++D + K
Sbjct: 167 EEMSG-SSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSK 225

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              + E   +L  M +   +P  +T+  ++  + K    ++ ++V   +     +P L  
Sbjct: 226 ASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFI 285

Query: 194 FNSMIINYGKARLQGKAEYVFQ---KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           F S++  Y     +G+AE  +Q   +MTA    P  I Y  +I +      V  AR +FD
Sbjct: 286 FTSLLSYYLS---KGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFD 342

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            + + G      T   +++ +   G    A  + E     GV PD   Y  L   Y K  
Sbjct: 343 SMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLE 402

Query: 311 MKELVQKLLKRMEQNGIVPNKRFF 334
             +    +  RM  +GI PN   F
Sbjct: 403 RVDQAFGVYDRMVASGIKPNAVTF 426



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/331 (19%), Positives = 134/331 (40%), Gaps = 9/331 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I+ +    +   A   F+ M ++GC PD   +  LI          KA    +G+ 
Sbjct: 10  YNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGF------CKAGQPQVGHK 63

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
              + ++R +P++  Y  ++    +A ++D     F+ +     + D+ +Y  V+     
Sbjct: 64  LLNQALKRFRPDVFLYTSVIHGYCKAGDLD--TGYFRAVTPKA-SLDVISYTTVIKGLAD 120

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +  I E   +   +K+  C P+++ +  +ID   K    +   + F+ +  S   PT  T
Sbjct: 121 SKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTT 180

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +  +I    KA++   A  VF++M      P  ITY  +I  +     +  AR++ D + 
Sbjct: 181 YTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVML 240

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G +    T  +++  +C   +  EA  +       G  P    +  L   Y      E
Sbjct: 241 TKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAE 300

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
              ++L  M   G  P+   +   ++   S+
Sbjct: 301 EAYQVLTEMTARGCAPDVILYTSLIDLLFST 331



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 122/320 (38%), Gaps = 10/320 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + K      A  +F +M   GC PD   Y  LI        KA  + +A    
Sbjct: 181 YTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGF----SKASKMDEARKLL 236

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             M  KG E   P  VTY  ++    +   +++   +  ++ E    P ++ +  ++  Y
Sbjct: 237 DVMLTKGPE---PTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYY 293

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
              G  +E   VL+ M +  C PD+I +  LID         +   VF S++     P  
Sbjct: 294 LSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDA 353

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+ ++I N+ K      A  + + M      P    Y  ++  Y   + V +A  ++D 
Sbjct: 354 LTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDR 413

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF-ENSHNMGVTPDSSTYKLLYKAYTKAN 310
           +   G      T N ++     +G    A  LF E      V P   +Y +L     KA 
Sbjct: 414 MVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAG 473

Query: 311 MKELVQKLLKRMEQNGIVPN 330
                    + M   GI+P 
Sbjct: 474 RVSEAFLQFQEMIDRGIIPE 493



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  +I    K G    A  +   M  SG  PD   YN+L+  ++    K + + +A
Sbjct: 352 DALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYV----KLERVDQA 407

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE-LHESILAPDIYTYNGVM 128
            G + +M      KPN VT+N+L+    +    D+  +LFKE L +  + P + +Y  ++
Sbjct: 408 FGVYDRMVA-SGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILI 466

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D  GK G + E       M      P+  T+  LI S  K     + +++ + ++     
Sbjct: 467 DGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVN 526

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 232
           P +  ++++I     + +   A  VFQ+M      P+ +TY+ +
Sbjct: 527 PDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVL 570



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/320 (20%), Positives = 136/320 (42%), Gaps = 13/320 (4%)

Query: 41  GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR 100
           GC P    YN +I+  L + DK   + +A  +F  M     C+P+++ +  L+    +A 
Sbjct: 2   GCEPTIVSYNTVISG-LASIDK---MDEAYKFFNSMID-NGCEPDVIAFTTLIHGFCKA- 55

Query: 101 NVDQVNALFKELHESI--LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
              Q     K L++++    PD++ Y  V+  Y K G   ++++   R  + +   D+I+
Sbjct: 56  --GQPQVGHKLLNQALKRFRPDVFLYTSVIHGYCKAG---DLDTGYFRAVTPKASLDVIS 110

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +  +I      +  D+  ++F+ L  +   P +  + ++I    KA         F++M+
Sbjct: 111 YTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMS 170

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
                P+  TY  +I        +  A ++F+++ + G      T   +++ +       
Sbjct: 171 GSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMD 230

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           EA  L +     G  P + TY  +   + K +M    ++++ +M + G  P    F   L
Sbjct: 231 EARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLL 290

Query: 339 ETFSSSLAGSQSGSAKTDLT 358
             + S     ++    T++T
Sbjct: 291 SYYLSKGRAEEAYQVLTEMT 310



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 10/112 (8%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R  I +   Y+ LI  + K G+   A  L  +M   G  PD   Y+ALIT  + +    
Sbjct: 487 DRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDS---- 542

Query: 64  KALAKALGYFQKMKGMER-CKPNIVTYNIL---LRACAQARNVDQVNALFKE 111
             +  A   FQ+M  M+R C PN VTY +L    RA  +A +++ V   F +
Sbjct: 543 SMVDTAWDVFQEM--MKRGCAPNEVTYKVLRRGFRAAGRALDLEAVKQHFSQ 592



 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 5/130 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  +GK G+   A   F EM + G  P+   Y +LI    ++  KA  + +A    
Sbjct: 462 YTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLI----YSLAKAGRIPEAKKLV 517

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M  +    P++  Y+ L+     +  VD    +F+E+ +   AP+  TY  +   +  
Sbjct: 518 EDMVKL-GVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRA 576

Query: 134 NGMIKEMESV 143
            G   ++E+V
Sbjct: 577 AGRALDLEAV 586


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 159/334 (47%), Gaps = 10/334 (2%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R +  +T  Y+ LI+ + K+ Q   A  L   + + G  PD   +N+LI     T +   
Sbjct: 380 RDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRL 439

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYT 123
           A+      F++MK  + C P+  TYN+L+ + C++ R +++  +L KE+  S  + ++ T
Sbjct: 440 AME----LFEEMK-TKGCHPDEFTYNMLIDSLCSRGR-LEEALSLLKEMESSGCSRNVVT 493

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++D + KN  I+E E +   M+      +++T+N LID   K +  ++  Q+   ++
Sbjct: 494 YNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQML 553

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
               KP   T+NS++  + +A    KA  + Q MT+    P  +TY  +I        V 
Sbjct: 554 MEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVE 613

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  +   +   G  +   T N +++A       +EA  LF      G  PD+ TYK+++
Sbjct: 614 LASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVF 673

Query: 304 KAYTKAN--MKELVQKLLKRMEQNGIVPNKRFFL 335
           +        + E V  L++ M   G +P+   FL
Sbjct: 674 RGLCSGGGPIGEAVDFLVE-MTDKGFLPDFSSFL 706



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 146/324 (45%), Gaps = 9/324 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           +  D   ++ L+  + + G  + A+ +   M   G  PD   YN+LI        K   +
Sbjct: 312 FRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLC----KLGEV 367

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            +A+    +M  +    PN VTYN L+    +   V++   L + L    + PD+ T+N 
Sbjct: 368 EEAVEILNQMI-LRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNS 426

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++         +    +   MK+  C PD  T+N+LIDS   R   ++   + K +  S 
Sbjct: 427 LIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSG 486

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
               + T+N++I  + K +   +AE +F +M     + + +TY  +I   G C N  V  
Sbjct: 487 CSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLID--GLCKNRRVEE 544

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A ++ D++   G      T N++L  +C  G   +A  + +   + G  PDS TY  L  
Sbjct: 545 AAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLIL 604

Query: 305 AYTKANMKELVQKLLKRMEQNGIV 328
             +KA   EL  +LL+ ++  G+V
Sbjct: 605 GLSKAGRVELASRLLRTVQLKGMV 628



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 134/321 (41%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ LI  + +  Q R A+ +  EM + G  PD   +  L+   +   +   AL   
Sbjct: 210 DVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALR-- 267

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               ++      C  + VT N+L+    +   +++V +   E+      PD +T+N +++
Sbjct: 268 ---IREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVN 324

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              + G +K    +L  M      PDI T+N LI    K    ++  ++   ++     P
Sbjct: 325 GLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSP 384

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T+N++I    K     +A  + + +T+    P   T+  +I      +N   A E+F
Sbjct: 385 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELF 444

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +E+   G      T N ++++ C  G   EA  L +   + G + +  TY  L   + K 
Sbjct: 445 EEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKN 504

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              E  +++   ME  GI  N
Sbjct: 505 KRIEEAEEIFDEMELQGISRN 525



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 138/322 (42%), Gaps = 5/322 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ L+    ++G    A+ +  +M  +GC   PS  N  +   +H   K   + + 
Sbjct: 245 DEKTFTTLMQGFIEEGNMNGALRIREQMVAAGC---PS-SNVTVNVLVHGYCKEGRIEEV 300

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L +  +M   E  +P+  T+N L+    +  +V     +   + +    PDI+TYN ++ 
Sbjct: 301 LSFIDEMSN-EGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIF 359

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K G ++E   +L++M      P+ +T+N LI +  K    ++  ++ + L      P
Sbjct: 360 GLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILP 419

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + TFNS+I           A  +F++M      P   TY  +I        +  A  + 
Sbjct: 420 DVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLL 479

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+   G    V T N +++ +C N    EA+ +F+     G++ +  TY  L     K 
Sbjct: 480 KEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKN 539

Query: 310 NMKELVQKLLKRMEQNGIVPNK 331
              E   +L+ +M   G+ P+K
Sbjct: 540 RRVEEAAQLMDQMLMEGLKPDK 561



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 152/394 (38%), Gaps = 66/394 (16%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT--AHLHTR 60
           KQ  ++  + IY +++  +GK G       +  EM+++GC      +  LI   A     
Sbjct: 97  KQPNFVPSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELF 156

Query: 61  DKAKA--------------------LAKALGYFQKMKGME---------RCKPNIVTYNI 91
           D+A A                    L   L    K+K +E           KP++ T+NI
Sbjct: 157 DEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNI 216

Query: 92  LLRACAQARNVDQVNALFKELHESILAPDIYTY--------------------------- 124
           L++A  +A  +     + +E+    L+PD  T+                           
Sbjct: 217 LIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAG 276

Query: 125 --------NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
                   N ++  Y K G I+E+ S +  M +   +PD  TFN L++   +        
Sbjct: 277 CPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHAL 336

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           ++   ++     P + T+NS+I    K     +A  +  +M    ++P+ +TY  +I+  
Sbjct: 337 EILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTL 396

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
              + V  A E+   L+  G    V T N++++  C+      A  LFE     G  PD 
Sbjct: 397 CKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDE 456

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            TY +L  +       E    LLK ME +G   N
Sbjct: 457 FTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRN 490


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 148/342 (43%), Gaps = 7/342 (2%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           Q QR    D   Y+ LI    K+     AM L  EMR+ GC+PD   YN LI        
Sbjct: 238 QMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGIC---- 293

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPD 120
           K   L +A+ +   M     C+PN++T+NI+LR+ C+  R +D       E+     +P 
Sbjct: 294 KEGRLDEAIRFLNHMPSYG-CQPNVITHNIILRSMCSTGRWMD-AEKFLAEMIRKGCSPS 351

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + T+N +++   + G+I     VL +M  + C P+ +++N L+ +  K +  ++  +   
Sbjct: 352 VVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLD 411

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++     P + T+N+++    K      A  +  ++ +   +P  ITY  +I       
Sbjct: 412 IMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVG 471

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
               A ++ DE+   G    + T + ++      G   EA   F +   MGV P++ TY 
Sbjct: 472 KTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYN 531

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            +     KA         L  M   G  P +  ++  +E  +
Sbjct: 532 SIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLA 573



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 162/381 (42%), Gaps = 39/381 (10%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R  I D    + LI  + K G+T  A  +   + +SG  PD   YN LI+ +  T +   
Sbjct: 139 RGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGS 198

Query: 65  ALA------------------KALGYFQKMK--------GMER-CKPNIVTYNILLRACA 97
           AL                   + L    K+K         M+R C P+++TY IL+ A  
Sbjct: 199 ALQLLDRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATC 258

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           +   V Q   L  E+ +    PD+ TYN +++   K G + E    L+ M S  C+P++I
Sbjct: 259 KESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVI 318

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           T N+++ S      +   E+    ++     P++ TFN +I    +  L G+A  V +KM
Sbjct: 319 THNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKM 378

Query: 218 TAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
                TP+ ++Y  +  ++  C +  + RA E  D +   G    + T N +L A C +G
Sbjct: 379 PQHGCTPNSLSYNPL--LHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDG 436

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335
               A  +     + G +P   TY  +    +K    +   KLL  M+  G+ P+   + 
Sbjct: 437 KVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITY- 495

Query: 336 EALETFSSSLAGSQSGSAKTD 356
                  S+L G  S   K D
Sbjct: 496 -------STLVGGLSREGKVD 509



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 108/243 (44%), Gaps = 5/243 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI  + +KG    A+ +  +M   GC P+   YN L    LH   K K + +A+ Y 
Sbjct: 355 FNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPL----LHALCKDKKMERAIEYL 410

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             M     C P+IVTYN LL A  +   VD    +  +L     +P + TYN V+D   K
Sbjct: 411 DIMVS-RGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSK 469

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G   +   +L  MK    KPDIIT++ L+    +    D+    F  L     KP   T
Sbjct: 470 VGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAIT 529

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS+++   KAR   +A      M A    P+  +Y  +I    Y      A E+ +EL 
Sbjct: 530 YNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELC 589

Query: 254 KLG 256
             G
Sbjct: 590 SRG 592



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 132/321 (41%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++  +   G+ + AM +        C PD   Y  LI A      K   + +A
Sbjct: 211 DVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATC----KESGVGQA 266

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +    +M+  + CKP++VTYN+L+    +   +D+       +      P++ T+N ++ 
Sbjct: 267 MKLLDEMRD-KGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILR 325

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           +    G   + E  L+ M    C P ++TFN+LI+   ++    +   V + +      P
Sbjct: 326 SMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTP 385

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              ++N ++    K +   +A      M +    P  +TY  ++T       V  A EI 
Sbjct: 386 NSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 445

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           ++L   G    + T N +++     G   +A  L +     G+ PD  TY  L    ++ 
Sbjct: 446 NQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSRE 505

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +        +E+ G+ PN
Sbjct: 506 GKVDEAIAFFHDLEEMGVKPN 526



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 75/198 (37%), Gaps = 3/198 (1%)

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           +NG ++E    L  M      PDII    LI    K     K  +V + L  S   P + 
Sbjct: 122 RNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVI 181

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N +I  Y K    G A    Q +  M  +P  +TY  I+        +  A E+ D  
Sbjct: 182 TYNVLISGYCKTGEIGSA---LQLLDRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQ 238

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            +      V T   ++EA C      +A  L +   + G  PD  TY +L     K    
Sbjct: 239 MQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRL 298

Query: 313 ELVQKLLKRMEQNGIVPN 330
           +   + L  M   G  PN
Sbjct: 299 DEAIRFLNHMPSYGCQPN 316


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 157/371 (42%), Gaps = 39/371 (10%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH---------LHTRDKAKA 65
           + LI    + G+TR A  +   +  SG  PD   YN +I+ +         L   D+   
Sbjct: 141 TTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSV 200

Query: 66  LAKALGYF-------------QKMKGMER-----CKPNIVTYNILLRACAQARNVDQVNA 107
               + Y              Q M+ ++R     C P+++TY IL+ A  +   V Q   
Sbjct: 201 SPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMK 260

Query: 108 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
           L  E+ +    PD+ TYN +++   K G + E    L+ M S+ C+P++IT N+++ S  
Sbjct: 261 LLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMC 320

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
               +   E++   ++     P++ TFN +I    +  L G+A  + +KM      P+ +
Sbjct: 321 STGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSL 380

Query: 228 TYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
           +Y  +  ++G+C    + RA E  + +   G    + T N ML A C +G   +A  +  
Sbjct: 381 SYNPL--LHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILN 438

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 345
              + G +P   TY  +     KA       KLL  M    + P+   +        SSL
Sbjct: 439 QLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITY--------SSL 490

Query: 346 AGSQSGSAKTD 356
            G  S   K D
Sbjct: 491 VGGLSREGKVD 501



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 152/342 (44%), Gaps = 11/342 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR    D   Y+ LI    +      AM L  EMR+ GC PD   YN L+        K 
Sbjct: 232 QRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGIC----KE 287

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIY 122
             L +A+ +   M     C+PN++T+NI+LR+ C+  R +D    L  ++     +P + 
Sbjct: 288 GRLDEAIKFLNDMPS-SGCQPNVITHNIILRSMCSTGRWMD-AEKLLADMLRKGFSPSVV 345

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           T+N +++   + G++     +L +M  + C+P+ +++N L+  + K +  D+  +  + +
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           +     P + T+N+M+    K      A  +  ++++   +P  ITY  +I         
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKT 465

Query: 243 SRAREIFDELSKLGKDMKVSTL--NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            +A ++ DE+    KD+K  T+  ++++      G   EA   F     MGV P++ T+ 
Sbjct: 466 GKAIKLLDEMR--AKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFN 523

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            +     K    +     L  M   G  P +  +   +E  +
Sbjct: 524 SIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLA 565



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 140/325 (43%), Gaps = 5/325 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++  +   G+ + AM +   M    C PD   Y  LI A    RD    + +A
Sbjct: 203 DVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEAT--CRDSG--VGQA 258

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +    +M+    C P++VTYN+L+    +   +D+      ++  S   P++ T+N ++ 
Sbjct: 259 MKLLDEMRD-RGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILR 317

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           +    G   + E +L+ M      P ++TFN+LI+   ++    +   + + +     +P
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQP 377

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              ++N ++  + K +   +A    ++M +    P  +TY  ++T       V  A EI 
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           ++LS  G    + T N +++     G   +A  L +      + PD+ TY  L    ++ 
Sbjct: 438 NQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSRE 497

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
              +   K     E+ G+ PN   F
Sbjct: 498 GKVDEAIKFFHEFERMGVRPNAVTF 522



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 141/329 (42%), Gaps = 11/329 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT--- 59
           + R    D   Y+ L+  + K+G+   A+   ++M +SGC+P+   +N ++ +   T   
Sbjct: 266 RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRW 325

Query: 60  RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
            D  K LA  L      KG     P++VT+NIL+    +   + +   + +++ +    P
Sbjct: 326 MDAEKLLADML-----RKGFS---PSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQP 377

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           +  +YN ++  + K   +      L RM S  C PDI+T+N ++ +  K    +   ++ 
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             L      P L T+N++I    KA   GKA  +  +M A    P  ITY  ++      
Sbjct: 438 NQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSRE 497

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             V  A + F E  ++G      T N+++   C       A        N G  P  ++Y
Sbjct: 498 GKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSY 557

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIV 328
            +L +      M +   +LL  +   G++
Sbjct: 558 TILIEGLAYEGMAKEALELLNELCNKGLM 586



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 110/260 (42%), Gaps = 7/260 (2%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+I+    L+R   +     +   + + L  S   PD+ TYN ++  Y K G I    SV
Sbjct: 135 PDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSV 194

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L RM  +   PD++T+N ++ S        +  +V   ++     P + T+  +I    +
Sbjct: 195 LDRMSVS---PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCR 251

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKV 261
               G+A  +  +M     TP  +TY  ++   G C    +  A +  +++   G    V
Sbjct: 252 DSGVGQAMKLLDEMRDRGCTPDVVTYNVLVN--GICKEGRLDEAIKFLNDMPSSGCQPNV 309

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T N +L + C  G   +A+ L  +    G +P   T+ +L     +  +      +L++
Sbjct: 310 ITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEK 369

Query: 322 MEQNGIVPNKRFFLEALETF 341
           M ++G  PN   +   L  F
Sbjct: 370 MPKHGCQPNSLSYNPLLHGF 389


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 144/321 (44%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ LI    + G+   AM  + EM+  G  PD   ++ LI     TR K   +  A
Sbjct: 261 DVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLI-GLFSTRGK---MDHA 316

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
             Y ++MKG+    P+ V Y +++    +A ++ +   +  E+      PD+ TYN +++
Sbjct: 317 AAYLREMKGLGLV-PDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLN 375

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K   + + E +L+ MK     PD+ TF  LI  Y +   F+K  Q+F +L+H + +P
Sbjct: 376 GLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRP 435

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  +NS+I    +     KA  ++  M A +  P+ +TY  +I  +     V  A    
Sbjct: 436 DVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFL 495

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE+   G    + T N++++ YC +G   +     +      + PD  T+  L   Y K 
Sbjct: 496 DEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKE 555

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
                   +   ME+  + P+
Sbjct: 556 ENMHGAFNVFNIMEKEMVQPD 576



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 152/367 (41%), Gaps = 42/367 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR    D   +S LI +   +G+   A     EM+  G  PD  +Y  +I        +
Sbjct: 289 QQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFC----R 344

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQAR--------------------- 100
           A ++++AL    +M G+  C P++VTYN LL   C Q R                     
Sbjct: 345 AGSMSEALRVRDEMVGLG-CLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLC 403

Query: 101 -------------NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
                        N ++   LF  L    L PD+  YN ++D   + G + +   +   M
Sbjct: 404 TFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDM 463

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
            + +  P+ +T+++LIDS+ ++   ++       ++     P + T+NS+I  Y ++   
Sbjct: 464 HAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNV 523

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            K +   QKM      P  IT+  +I  Y   +N+  A  +F+ + K        T N +
Sbjct: 524 KKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMI 583

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKRMEQNG 326
           +  +   G   EA  +F+     G+ PD  TY  L   + T  N KE  Q L   M   G
Sbjct: 584 INGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQ-LHDEMMHRG 642

Query: 327 IVPNKRF 333
             P+ +F
Sbjct: 643 FAPDDKF 649



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/359 (22%), Positives = 161/359 (44%), Gaps = 25/359 (6%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR-- 60
           ++R    D   ++ LI    + G    A+ L   M N G +P    +N+++      R  
Sbjct: 184 EKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRF 243

Query: 61  DKAKALAKALGYFQKMKGMERCK--PNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
           DKAK + +A         M++C   P++ ++NIL+    +   V++    +KE+ +  + 
Sbjct: 244 DKAKEVFRA---------MDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVT 294

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD+ +++ ++  +   G +    + L  MK     PD + + ++I  + +  +  +  +V
Sbjct: 295 PDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRV 354

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
              ++     P + T+N+++    K      AE +  +M     TP   T+  +I  +GY
Sbjct: 355 RDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLI--HGY 412

Query: 239 C--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
           C   N  +A ++FD L        V   N++++  C  G   +A+ L+++ H   + P+ 
Sbjct: 413 CRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNH 472

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG-SQSGSAK 354
            TY +L  ++ +    E     L  M   G +PN       + T++S + G  +SG+ K
Sbjct: 473 VTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPN-------IMTYNSIIKGYCRSGNVK 524



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 124/276 (44%), Gaps = 5/276 (1%)

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCK-PNIVTYNILLRACAQARNVDQVNALFKELHES 115
           +H+  K+    KA     +M+  +RC  P++VT+N+L+ A  +A +VD   AL   +   
Sbjct: 164 VHSYCKSLEFDKADTVISEME--KRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANK 221

Query: 116 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 175
            L P I T+N V+    K+    + + V   M      PD+ +FN+LI  + +    ++ 
Sbjct: 222 GLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEA 281

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYG-KARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
            + +K +      P + +F+ +I  +  + ++   A Y+ ++M  +   P  + Y  +I 
Sbjct: 282 MKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYL-REMKGLGLVPDGVIYTMVIG 340

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
            +    ++S A  + DE+  LG    V T N +L   C      +A+ L       GVTP
Sbjct: 341 GFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTP 400

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           D  T+  L   Y +    E   +L   +    + P+
Sbjct: 401 DLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPD 436



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 100/227 (44%), Gaps = 4/227 (1%)

Query: 108 LFKELHESILAPD----IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           L +E +  +L+ D     YT N ++ +Y K+    + ++V+S M+     PD++T N+LI
Sbjct: 140 LAEEAYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLI 199

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           D+  +    D    +  S+ +   KP + TFNS++    K R   KA+ VF+ M      
Sbjct: 200 DARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVA 259

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
           P   ++  +I  +     V  A + + E+ + G    V + + ++  +   G    A   
Sbjct: 260 PDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAY 319

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                 +G+ PD   Y ++   + +A       ++   M   G +P+
Sbjct: 320 LREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPD 366



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 73/168 (43%)

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
           E+ ++ ++ S  +    T N M+ +Y K+    KA+ V  +M      P  +T+  +I  
Sbjct: 142 EEAYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDA 201

Query: 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
                +V  A  + D ++  G    + T N++L+  C +    +A  +F       V PD
Sbjct: 202 RFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPD 261

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
             ++ +L   + +    E   K  K M+Q G+ P+   F   +  FS+
Sbjct: 262 VRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFST 309


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 138/318 (43%), Gaps = 4/318 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  +  +G+   A+ +  +MR +GC P+   YN L+ A      +A  L  A    
Sbjct: 155 YNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFC----RAGELDGAERVV 210

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             M+     KPN+VT+N ++    +A  ++    +F E+    LAPD+ +YN ++  Y K
Sbjct: 211 SLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCK 270

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + E  +V S M      PD++TF  LI +  K    ++   +   +     +    T
Sbjct: 271 VGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVT 330

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           F ++I  + K      A    ++M      PS + Y  +I  Y     +  ARE+  E+ 
Sbjct: 331 FTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREME 390

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
                  V T + ++  YC  G    A  L +     GV PD+ TY  L +   +     
Sbjct: 391 AKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLN 450

Query: 314 LVQKLLKRMEQNGIVPNK 331
              +L + M Q G+ P++
Sbjct: 451 DACELFENMLQLGVQPDE 468



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 152/321 (47%), Gaps = 13/321 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ ++  + K G+   A  +F EM   G  PD   YN L++ +     K   L ++L  F
Sbjct: 226 FNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYC----KVGCLHESLAVF 281

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  +G+    P++VT+  L+ A  +A N++Q  AL  ++ E  L  +  T+  ++D +
Sbjct: 282 SEMTQRGL---VPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGF 338

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G + +    +  M+    +P ++ +N LI+ Y K    D   ++ + +   + KP +
Sbjct: 339 CKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDV 398

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIF 249
            T++++I  Y K      A  + QKM      P  ITY  +I   G C+   ++ A E+F
Sbjct: 399 VTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIR--GLCEEKRLNDACELF 456

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           + + +LG      T   +++ +C  G   +A  L +     GV PD  TY +L    +K+
Sbjct: 457 ENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKS 516

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +   +LL ++     VP+
Sbjct: 517 ARTKEAHRLLFKLYHEDPVPD 537



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 132/304 (43%), Gaps = 52/304 (17%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P++  YN +L A + A ++         +    +AP++YTYN ++ A    G ++E   V
Sbjct: 116 PSVPAYNAVLLALSDA-SLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGV 174

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK--EKPTLPTFNSMIINY 201
           +  M+   C P+ +T+N L+ ++ +    D  E+V  SLM  +   KP L TFNSM+   
Sbjct: 175 VGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV-SLMREEGNAKPNLVTFNSMVNGL 233

Query: 202 GKA-RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--------------------- 239
            KA R++G A  VF +M      P  ++Y  +++  GYC                     
Sbjct: 234 CKAGRMEG-ARKVFDEMVREGLAPDVVSYNTLLS--GYCKVGCLHESLAVFSEMTQRGLV 290

Query: 240 ----------------DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
                            N+ +A  +  ++ + G  M   T  A+++ +C  G   +A L 
Sbjct: 291 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLA 350

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
            E     G+ P    Y  L   Y K    +L ++L++ ME   + P+       + T+S+
Sbjct: 351 VEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPD-------VVTYST 403

Query: 344 SLAG 347
            ++G
Sbjct: 404 IISG 407



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 144/344 (41%), Gaps = 24/344 (6%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR  + D   ++ LI    K G    A+ L ++MR  G R +   + ALI        K 
Sbjct: 286 QRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFC----KK 341

Query: 64  KALAKALGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             L  AL   ++M+   +C  +P++V YN L+    +   +D    L +E+    + PD+
Sbjct: 342 GFLDDALLAVEEMR---KCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDV 398

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TY+ ++  Y K G +     +  +M      PD IT++ LI    + +  +   ++F++
Sbjct: 399 VTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFEN 458

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++    +P   T+ ++I  + K     KA  +  +M      P  +TY  +I        
Sbjct: 459 MLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSAR 518

Query: 242 VSRAREI---------------FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
              A  +               +D L       +  ++ A+L+ +CM GL  EAD ++++
Sbjct: 519 TKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQS 578

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +     D S Y +L   + +           K+M ++G  PN
Sbjct: 579 MLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPN 622



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 148/323 (45%), Gaps = 14/323 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L++   K G    ++ +FSEM   G  PD   + +LI    H   KA  L +A
Sbjct: 257 DVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLI----HATCKAGNLEQA 312

Query: 70  LGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           +    +M+  ER  + N VT+  L+    +   +D      +E+ +  + P +  YN ++
Sbjct: 313 VALVAQMR--ERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALI 370

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + Y K G +     ++  M++ + KPD++T++ +I  Y K    D   Q+ + ++     
Sbjct: 371 NGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVL 430

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAR 246
           P   T++S+I    + +    A  +F+ M  +   P   TY  +I   G+C   NV +A 
Sbjct: 431 PDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLID--GHCKEGNVEKAL 488

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKLLYKA 305
            + DE+ + G    V T + ++     +    EA  LLF+  H   V PD+  Y  L   
Sbjct: 489 SLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPV-PDNIKYDALMLC 547

Query: 306 YTKANMKELVQKLLKRMEQNGIV 328
            +KA  K +V  LLK     G++
Sbjct: 548 CSKAEFKSVV-ALLKGFCMKGLM 569


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 139/303 (45%), Gaps = 11/303 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +Q   + D   YS L+   GK G+   A+ +F  M+ +GC PD  VYN LI+       K
Sbjct: 327 EQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISC----LGK 382

Query: 63  AKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
              + +AL   + M  KG+    P+  TYNI++   +     ++  + F  +     +PD
Sbjct: 383 QGKVDEALELLEDMNRKGI---MPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPD 439

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF-DKMEQVF 179
           + TYN +++   K     E   +   M++N+C PD+ TF  LID+  K     D +EQ  
Sbjct: 440 VVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSA 499

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           + L+     P    +N++I  + ++    K   +FQ M      P  ITY  ++  +   
Sbjct: 500 R-LVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRR 558

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            + S A E+  E+ + G    ++T N ++ +  M G   +A  LF+     G  PD  TY
Sbjct: 559 GHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTY 618

Query: 300 KLL 302
             L
Sbjct: 619 SAL 621



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 161/347 (46%), Gaps = 12/347 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-GCRPDPSVYNALITAHLHT 59
           M++  +   DT  ++  +  + +  +   AM LF +MR +  C PD   YN LI  +   
Sbjct: 79  MRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDCAPDVVAYNTLIAGYC-- 136

Query: 60  RDKAKALAKALGYFQKMKGMERCKPNIVTYNIL-LRACAQARNVDQVNALFKELHESILA 118
             KA    +AL  F+++K    CKPN V+++ L +  C  +R  D + A+F+E+  + L 
Sbjct: 137 --KAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDAL-AVFQEMLGAGLK 193

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
            D+   N ++    + GM+++   +L  M ++ C  D  T+ +L++++ +     ++   
Sbjct: 194 ADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQMHEVASF 253

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
            +   H     +   +N +I  + +     +A  +F+     +  P   TY  +I +   
Sbjct: 254 MELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYNLLIAL--- 310

Query: 239 CDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
           C +  +  A  +F E  + G  + V T + +++A+   G   +A  +F N    G  PD+
Sbjct: 311 CKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDT 370

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
             Y +L     K    +   +LL+ M + GI+P+ R +   ++  SS
Sbjct: 371 VVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSS 417



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 151/386 (39%), Gaps = 66/386 (17%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-----LHTRDKA 63
           AD  + + LI    + G  R A  L   M    C  D   Y  L+ AH     +H     
Sbjct: 194 ADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQMHEVASF 253

Query: 64  KALAK-------ALGYFQKMKGMERCK------------------PNIVTYNILLRACAQ 98
             LA+       A+ Y   ++G  RC                   P++ TYN+L+  C +
Sbjct: 254 MELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYNLLIALC-K 312

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII- 157
           ++ +++   LF+E  +  +  D++TY+ +MDA+GK G   +   V   M+   C PD + 
Sbjct: 313 SKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVV 372

Query: 158 ----------------------------------TFNLLIDSYGKRQAFDKMEQVFKSLM 183
                                             T+N++ID       ++K    F  + 
Sbjct: 373 YNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMK 432

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
             K  P + T+N+++    K R   +A  +F +M A K  P   T+  +I        + 
Sbjct: 433 RRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRME 492

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A E    L K+G        NA++  +C +G   +   LF++       PDS TY +L 
Sbjct: 493 DALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILV 552

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVP 329
             +++     +  +LL+ M + G  P
Sbjct: 553 LGFSRRGHTSMAMELLQEMVREGHTP 578



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 141/323 (43%), Gaps = 6/323 (1%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ LIA+   K Q   A+ LF E    G   D   Y+ L+ A      KA   A
Sbjct: 298 VPDVFTYNLLIALCKSK-QLEEALTLFQEAEQGGVVLDVFTYSYLMDAF----GKAGRAA 352

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           KAL  F  M+    C P+ V YN+L+    +   VD+   L ++++   + PD  TYN V
Sbjct: 353 KALEVFYNMQK-AGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIV 411

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D     G  ++  S    MK  +  PD++T+N L++   K +  D+   +F  +  +K 
Sbjct: 412 IDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKC 471

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P L TF ++I    KA     A     ++  M + P+   Y  +I+ +     V +  E
Sbjct: 472 MPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYE 531

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F ++ +        T   ++  +   G  + A  L +     G TP  +TY +L ++ +
Sbjct: 532 LFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLS 591

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
            A   E    L K M   G  P+
Sbjct: 592 MAGQVEDAYTLFKEMIAKGFNPD 614



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 111/269 (41%), Gaps = 3/269 (1%)

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI-LAPD 120
           +A  L  A+G    M+    C+P+ V +   +    + R V+Q   LF ++ E+   APD
Sbjct: 65  RAGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDCAPD 124

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMK-SNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           +  YN ++  Y K G       +  R+K    CKP+ ++F+ L+    K         VF
Sbjct: 125 VVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVF 184

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           + ++ +  K  +   N++I    +  +  +A  +   MTA        TY  ++  +   
Sbjct: 185 QEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRA 244

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             +       +     G  +     N +++ +   G   EA  LFE++      PD  TY
Sbjct: 245 GQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTY 304

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIV 328
            LL  A  K+   E    L +  EQ G+V
Sbjct: 305 NLLI-ALCKSKQLEEALTLFQEAEQGGVV 332



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 5/197 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M K+R +  D   Y+ L+  + K  +T  A  LF EM+ + C PD + +  LI     T 
Sbjct: 430 MMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLI----DTL 485

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            KA  +  AL    ++  M    PN   YN L+    ++  VD+   LF+++ E    PD
Sbjct: 486 AKAGRMEDALEQSARLVKMGH-APNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPD 544

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TY  ++  + + G       +L  M      P + T+N+LI S       +    +FK
Sbjct: 545 SITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFK 604

Query: 181 SLMHSKEKPTLPTFNSM 197
            ++     P + T++++
Sbjct: 605 EMIAKGFNPDMQTYSAL 621


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 138/318 (43%), Gaps = 4/318 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  +  +G+   A+ +  +MR +GC P+   YN L+ A      +A  L  A    
Sbjct: 13  YNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFC----RAGELDGAERVV 68

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             M+     KPN+VT+N ++    +A  ++    +F E+    LAPD+ +YN ++  Y K
Sbjct: 69  SLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCK 128

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + E  +V S M      PD++TF  LI +  K    ++   +   +     +    T
Sbjct: 129 VGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVT 188

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           F ++I  + K      A    ++M      PS + Y  +I  Y     +  ARE+  E+ 
Sbjct: 189 FTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREME 248

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
                  V T + ++  YC  G    A  L +     GV PD+ TY  L +   +     
Sbjct: 249 AKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLN 308

Query: 314 LVQKLLKRMEQNGIVPNK 331
              +L + M Q G+ P++
Sbjct: 309 DACELFENMLQLGVQPDE 326



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 152/321 (47%), Gaps = 13/321 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ ++  + K G+   A  +F EM   G  PD   YN L++ +     K   L ++L  F
Sbjct: 84  FNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYC----KVGCLHESLAVF 139

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  +G+    P++VT+  L+ A  +A N++Q  AL  ++ E  L  +  T+  ++D +
Sbjct: 140 SEMTQRGL---VPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGF 196

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G + +    +  M+    +P ++ +N LI+ Y K    D   ++ + +   + KP +
Sbjct: 197 CKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDV 256

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIF 249
            T++++I  Y K      A  + QKM      P  ITY  +I   G C+   ++ A E+F
Sbjct: 257 VTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIR--GLCEEKRLNDACELF 314

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           + + +LG      T   +++ +C  G   +A  L +     GV PD  TY +L    +K+
Sbjct: 315 ENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKS 374

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +   +LL ++     VP+
Sbjct: 375 ARTKEAHRLLFKLYHEDPVPD 395



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 131/266 (49%), Gaps = 10/266 (3%)

Query: 84  PNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           PN+ TYNIL+RA CA+ R +++   +  ++  +  AP+  TYN ++ A+ + G +   E 
Sbjct: 8   PNVYTYNILVRALCARGR-LEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAER 66

Query: 143 VLSRMK-SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           V+S M+     KP+++TFN +++   K    +   +VF  ++     P + ++N+++  Y
Sbjct: 67  VVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGY 126

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            K     ++  VF +MT     P  +T+  +I       N+ +A  +  ++ + G  M  
Sbjct: 127 CKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNE 186

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T  A+++ +C  G   +A L  E     G+ P    Y  L   Y K    +L ++L++ 
Sbjct: 187 VTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIRE 246

Query: 322 MEQNGIVPNKRFFLEALETFSSSLAG 347
           ME   + P+       + T+S+ ++G
Sbjct: 247 MEAKRVKPD-------VVTYSTIISG 265



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 144/344 (41%), Gaps = 24/344 (6%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR  + D   ++ LI    K G    A+ L ++MR  G R +   + ALI        K 
Sbjct: 144 QRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFC----KK 199

Query: 64  KALAKALGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             L  AL   ++M+   +C  +P++V YN L+    +   +D    L +E+    + PD+
Sbjct: 200 GFLDDALLAVEEMR---KCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDV 256

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TY+ ++  Y K G +     +  +M      PD IT++ LI    + +  +   ++F++
Sbjct: 257 VTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFEN 316

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++    +P   T+ ++I  + K     KA  +  +M      P  +TY  +I        
Sbjct: 317 MLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSAR 376

Query: 242 VSRAREI---------------FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
              A  +               +D L       +  ++ A+L+ +CM GL  EAD ++++
Sbjct: 377 TKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQS 436

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +     D S Y +L   + +           K+M ++G  PN
Sbjct: 437 MLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPN 480


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 148/313 (47%), Gaps = 5/313 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + K G+TR A+ L   + +   RP+  +YN +I        K K + +A   +
Sbjct: 118 YATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLC----KDKLVNEAYDLY 173

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M       PN++TY+ L+     A  + +   L  E+    + P++YTY  +MDA  K
Sbjct: 174 SEMDA-RGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCK 232

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +KE +++L+ M     KP+++++N L+D Y         +Q+F +++     P + +
Sbjct: 233 EGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYS 292

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N MI    K++   +A  + +++      P+ +TY  +I  +     ++ A ++  E+ 
Sbjct: 293 YNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMY 352

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G+   V T  ++L+A C N    +A  LF      G+ P+  TY  L     K    +
Sbjct: 353 HRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHK 412

Query: 314 LVQKLLKRMEQNG 326
             QKL + +   G
Sbjct: 413 NAQKLFQHLLVKG 425



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 145/334 (43%), Gaps = 5/334 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M + R    +  +Y+ +I  + K      A  L+SEM   G  P+   Y+ LI       
Sbjct: 140 MIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFC--- 196

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
             A  L +A G   +M  ++   PN+ TY IL+ A  +   V +   L   + +  + P+
Sbjct: 197 -LAGQLMEAFGLLNEMI-LKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPN 254

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + +YN +MD Y   G ++  + +   M      P++ ++N++ID   K +  D+   + +
Sbjct: 255 VVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLR 314

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++H    P   T++S+I  + K      A  + ++M         +TY  ++       
Sbjct: 315 EVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQ 374

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           N+ +A  +F ++ + G      T  A+++  C  G    A  LF++    G   +  TY 
Sbjct: 375 NLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYN 434

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           ++     K  M +    +  +ME+NG +P+   F
Sbjct: 435 VMISGLCKEGMLDEALAMKSKMEENGCIPDAVTF 468



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 135/320 (42%), Gaps = 9/320 (2%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R    +   YS LI      GQ   A  L +EM      P+   Y  L+ A L    K K
Sbjct: 179 RGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDA-LCKEGKVK 237

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
                L    K    E  KPN+V+YN L+        V     +F  + +  + P++Y+Y
Sbjct: 238 EAKNLLAVMTK----EGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSY 293

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++D   K+  + E  ++L  +      P+ +T++ LID + K         + K + H
Sbjct: 294 NIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYH 353

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
             +   + T+ S++    K +   KA  +F KM      P+  TY  +I   G C     
Sbjct: 354 RGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALID--GLCKGGRH 411

Query: 245 --AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A+++F  L   G  + V T N M+   C  G+  EA  +       G  PD+ T++++
Sbjct: 412 KNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEII 471

Query: 303 YKAYTKANMKELVQKLLKRM 322
            ++  + +  +  +KLL  M
Sbjct: 472 IRSLFEKDQNDKAEKLLHEM 491



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/332 (19%), Positives = 137/332 (41%), Gaps = 13/332 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++K++  + K      A+ LF +M+  G  PD    N LI    H      +    LG  
Sbjct: 13  FNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFT-VLGKI 71

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP----DIYTYNGVMD 129
            K+      +PN +T N L++       V +        H+ ++A     D  +Y  +++
Sbjct: 72  LKLG----YQPNTITLNTLMKGLCLKGEVKKS----LHFHDKVVAQGFQMDQVSYATLLN 123

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K G  +    +L  ++    +P+++ +N +ID   K +  ++   ++  +      P
Sbjct: 124 GLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFP 183

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T++++I  +  A    +A  +  +M      P+  TY  ++        V  A+ + 
Sbjct: 184 NVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLL 243

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             ++K G    V + N +++ YC+ G    A  +F      GV P+  +Y ++     K+
Sbjct: 244 AVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKS 303

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
              +    LL+ +    +VPN   +   ++ F
Sbjct: 304 KRVDEAMNLLREVLHKNMVPNTVTYSSLIDGF 335



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 117/281 (41%), Gaps = 42/281 (14%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + K+G+ + A  L + M   G +P+   YN L+  +    +   A  K + + 
Sbjct: 223 YTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNA--KQMFHT 280

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP-------------- 119
              KG+    PN+ +YNI++    +++ VD+   L +E+    + P              
Sbjct: 281 MVQKGVN---PNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCK 337

Query: 120 ---------------------DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
                                D+ TY  ++DA  KN  + +  ++  +MK    +P+  T
Sbjct: 338 LGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYT 397

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +  LID   K       +++F+ L+    +  + T+N MI    K  +  +A  +  KM 
Sbjct: 398 YTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKME 457

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
                P  +T+E II      D   +A ++  E+  + KD+
Sbjct: 458 ENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEM--IAKDL 496



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 122/288 (42%), Gaps = 41/288 (14%)

Query: 81  RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140
           R  P I+ +N ++ +  + ++     +LFK++    + PD++T N +++ +   G +   
Sbjct: 5   RDTPPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFS 64

Query: 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKR---------------QAFDKMEQV-FKSLMH 184
            +VL ++     +P+ IT N L+     +               Q F +M+QV + +L++
Sbjct: 65  FTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGF-QMDQVSYATLLN 123

Query: 185 S--------------------KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 224
                                  +P +  +N++I    K +L  +A  ++ +M A    P
Sbjct: 124 GLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFP 183

Query: 225 SFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
           + ITY  +I  YG+C    +  A  + +E+     +  V T   +++A C  G   EA  
Sbjct: 184 NVITYSTLI--YGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKN 241

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           L       GV P+  +Y  L   Y      +  +++   M Q G+ PN
Sbjct: 242 LLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPN 289



 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 9/122 (7%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+R    +   Y+ LI  + K G+ + A  LF  +   GCR +   YN +I+       K
Sbjct: 387 KERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLC----K 442

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L +AL    KM+    C P+ VT+ I++R+  +    DQ +   K LHE I A D+ 
Sbjct: 443 EGMLDEALAMKSKMEE-NGCIPDAVTFEIIIRSLFEK---DQNDKAEKLLHEMI-AKDLL 497

Query: 123 TY 124
            +
Sbjct: 498 RF 499


>gi|222618027|gb|EEE54159.1| hypothetical protein OsJ_00969 [Oryza sativa Japonica Group]
          Length = 610

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 162/341 (47%), Gaps = 19/341 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+A +  +       WL +E+ ++G RPD   +NALI A +    +A+ + +A   F
Sbjct: 117 YTTLLAALTSQRAFDTIPWLLAEVEDAGLRPDSIFFNALINALV----EARRMGEATNTF 172

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI------LAPDIYTYNGV 127
            +M G   C+P   T+N L++    A   ++   +F  +          + P++ TYN +
Sbjct: 173 LRM-GHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGGAGGEAAVRPNLTTYNIL 231

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-QAFDKMEQVFKSLMHSK 186
           + A+   G ++E   V++RM+++   PD++T+N L  +Y K  + +   E V +    + 
Sbjct: 232 VKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDETWRAEELVVEMAQQAG 291

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            + +  T+  ++  Y +    G+A    ++M      P+ I +  ++  +   ++++   
Sbjct: 292 LRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFNTLLKGFLDANDMAAVD 351

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           ++   + + G    + T +  L A    G   +   +F+     G+ PD   Y +L K Y
Sbjct: 352 DVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGY 411

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
            +A   E  ++LL++M + G+ PN       + TF++ ++G
Sbjct: 412 VRAQQPEKAEELLRQMGRLGVRPN-------VVTFTTVISG 445



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 117/268 (43%), Gaps = 7/268 (2%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P++VTY  LL A    R  D +  L  E+ ++ L PD   +N +++A  +   + E  +
Sbjct: 111 RPSLVTYTTLLAALTSQRAFDTIPWLLAEVEDAGLRPDSIFFNALINALVEARRMGEATN 170

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE------KPTLPTFNS 196
              RM  + C+P   TFN LI  YG     ++ ++VF  +           +P L T+N 
Sbjct: 171 TFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGGAGGEAAVRPNLTTYNI 230

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS-KL 255
           ++  +  A    +A  V  +M A    P  +TY  + + Y   D   RA E+  E++ + 
Sbjct: 231 LVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDETWRAEELVVEMAQQA 290

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
           G      T   ++  YC  G   EA        + GV P+   +  L K +  AN    V
Sbjct: 291 GLRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFNTLLKGFLDANDMAAV 350

Query: 316 QKLLKRMEQNGIVPNKRFFLEALETFSS 343
             +L  MEQ GI P+   +   L   SS
Sbjct: 351 DDVLGLMEQFGIKPDIVTYSHQLNALSS 378



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 111/256 (43%), Gaps = 7/256 (2%)

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +RA   AR   Q ++ F+ L +    P + TY  ++ A         +  +L+ ++    
Sbjct: 86  MRAMIDARRPHQAHSAFRHLVDDGHRPSLVTYTTLLAALTSQRAFDTIPWLLAEVEDAGL 145

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           +PD I FN LI++  + +   +    F  + HS  +PT  TFN++I  YG A    +++ 
Sbjct: 146 RPDSIFFNALINALVEARRMGEATNTFLRMGHSGCRPTASTFNTLIKGYGIAGRPEESQR 205

Query: 213 VFQKMTAMKYT------PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
           VF  M +          P+  TY  ++  +     +  A  +   +   G D  V T N 
Sbjct: 206 VFDMMASGGAGGEAAVRPNLTTYNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNT 265

Query: 267 MLEAYCMNGLPTEA-DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
           +  AY  N     A +L+ E +   G+     T+ ++   Y +        + +++M+ +
Sbjct: 266 LASAYAKNDETWRAEELVVEMAQQAGLRTSERTWGIIVGGYCREGRLGEALRCVRQMKDS 325

Query: 326 GIVPNKRFFLEALETF 341
           G++PN   F   L+ F
Sbjct: 326 GVLPNVIVFNTLLKGF 341



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 111/277 (40%), Gaps = 47/277 (16%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA-------- 65
           Y+ L+      G+   A  + + MR SG  PD   YN L +A+    +  +A        
Sbjct: 228 YNILVKAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAKNDETWRAEELVVEMA 287

Query: 66  ------------------------LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN 101
                                   L +AL   ++MK      PN++ +N LL+    A +
Sbjct: 288 QQAGLRTSERTWGIIVGGYCREGRLGEALRCVRQMKD-SGVLPNVIVFNTLLKGFLDAND 346

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
           +  V+ +   + +  + PDI TY+  ++A    G + +   V  +M     +PD   +++
Sbjct: 347 MAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSI 406

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN---------SMIINYGKARLQGKAEY 212
           L   Y + Q  +K E++ + +     +P + TF          ++I  Y + +   KAE 
Sbjct: 407 LAKGYVRAQQPEKAEELLRQMGRLGVRPNVVTFTTVISGWTFETLIWGYSELKQPWKAEE 466

Query: 213 VFQKMTAMKYTPSFITYECIIT----MYGYCDNVSRA 245
           V Q M      P   TY C++       G  +N +RA
Sbjct: 467 VLQMMQDAGVRPKQTTY-CLVADAWKAVGLVENANRA 502


>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 529

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 156/339 (46%), Gaps = 31/339 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K GQTR A+     +     +PD  +YN +I        K K +  A   +
Sbjct: 120 YGTLINGLCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLC----KDKLVNDAFNLY 175

Query: 74  QKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            +M     C P++VTYN L+   C  A+  D +  L K + E I  P +YT++ ++DA+ 
Sbjct: 176 FEMVAKRIC-PSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDI-NPTVYTFSILIDAFC 233

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL---------- 182
           K G +KE ++V + M     KP+I+T+N L+D +       K + +F ++          
Sbjct: 234 KEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKMVDEAMNL 293

Query: 183 ---MHSKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY---TPSFITYECIITM 235
              MH K+  P +  +NS+I    K+   G+  Y  + +  M Y    P   TY  ++  
Sbjct: 294 FEEMHFKQIYPDMVIYNSLIDGLCKS---GRTPYALKFIGEMHYRGQPPDIFTYNSLLD- 349

Query: 236 YGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
              C N  V +A E+  +L   G    V T N ++   C +G   +A+ +FE+    G  
Sbjct: 350 -ALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVKGYN 408

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
            D  TY  + K + K  + +    ++ +M+ +G  P+ +
Sbjct: 409 TDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCSPDAK 447



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 145/339 (42%), Gaps = 23/339 (6%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++ Y +D   ++ LI  +  KG+   A+    ++   G + +   Y  LI        K 
Sbjct: 75  KKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGTLINGLC----KV 130

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
                AL + +++ G +  +P++V YN ++    + + V+    L+ E+    + P + T
Sbjct: 131 GQTRAALEFLRRIDG-KLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRICPSVVT 189

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++        +K+   +L +M      P + TF++LID++ K     + + VF  +M
Sbjct: 190 YNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGKMKEAKNVFAVMM 249

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM--------------KYTPSFITY 229
               KP + T+NS++  +    +  KA+ +F  M  M              +  P  + Y
Sbjct: 250 KEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKMVDEAMNLFEEMHFKQIYPDMVIY 309

Query: 230 ECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
             +I   G C +     A +   E+   G+   + T N++L+A C N    +A  L    
Sbjct: 310 NSLID--GLCKSGRTPYALKFIGEMHYRGQPPDIFTYNSLLDALCKNYHVDKAIELLTKL 367

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
            + G+ P   TY +L     K+   +  +K+ + +   G
Sbjct: 368 KDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVKG 406



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 110/230 (47%), Gaps = 11/230 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--LHTRDKAKAL----- 66
           +S LI    K+G+ + A  +F+ M     +P+   YN+L+  H  ++   KAK++     
Sbjct: 225 FSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMI 284

Query: 67  ---AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
               +A+  F++M   ++  P++V YN L+    ++           E+H     PDI+T
Sbjct: 285 KMVDEAMNLFEEMH-FKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFT 343

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++DA  KN  + +   +L+++K    +P + T+N+LI+   K       E+VF+ L+
Sbjct: 344 YNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLL 403

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
                  + T+N+MI  + K  L  +   +  KM     +P     E II
Sbjct: 404 VKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCSPDAKNCEIII 453



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 10/168 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  IY+ LI  + K G+T  A+    EM   G  PD   YN+L+ A      K   + KA
Sbjct: 305 DMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYNSLLDALC----KNYHVDKA 360

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +    K+K  +  +P++ TYNIL+    ++  +     +F++L       D+YTYN ++ 
Sbjct: 361 IELLTKLKD-QGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVKGYNTDVYTYNAMIK 419

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
            + K G+  E  +++S+MK + C PD     ++I     R  FDK E 
Sbjct: 420 GFCKKGLFDETLAMVSKMKDSGCSPDAKNCEIII-----RSLFDKGEN 462


>gi|218199303|gb|EEC81730.1| hypothetical protein OsI_25362 [Oryza sativa Indica Group]
          Length = 583

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 162/377 (42%), Gaps = 41/377 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I   G  G  + A+ L  +M  +G  PD   +N +++A    ++ A+  +KA+ YF
Sbjct: 84  YNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSA---LKNGAQ-YSKAISYF 139

Query: 74  QKMKGME------------------------------------RCKPNIVTYNILLRACA 97
           + MKG                                      +C P++VTY  ++ +  
Sbjct: 140 EIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYC 199

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
               V+   A+F  +    + P+I  YN ++ AY   GM +E  ++ + +K N  +PDI+
Sbjct: 200 IYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIV 259

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           ++  L+++YG+    +K  +VF  +  +  KP   ++N++I  YG A +  +A  +  +M
Sbjct: 260 SYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEM 319

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
                 P  ++   ++   G C  ++R   I +     G D+     N+ +++Y   G  
Sbjct: 320 EKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDY 379

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEA 337
            +A  L+ +     V PD+ TY +L    +K        +  + M  + +   K  FL  
Sbjct: 380 EKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKE-FLWT 438

Query: 338 LETFSSSLAGSQSGSAK 354
           +     SL   Q   +K
Sbjct: 439 IRWLEESLGPVQRDGSK 455



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 144/334 (43%), Gaps = 11/334 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+ Q  Y A   IY  +I +  +  Q   A  LF EM+   C+PD  +YN+LI  H H+R
Sbjct: 1   MKNQDNYCARNDIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLI--HAHSR 58

Query: 61  DKAKALAKALGYFQKMKGMERCK--PNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
                 A        M+ M R    P   TYN ++ AC  A N  +   L K++ E+ + 
Sbjct: 59  AGQWRWA-----INIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVG 113

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD+ T+N V+ A        +  S    MK      D  T N++I    K     +  ++
Sbjct: 114 PDLVTHNIVLSALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIEL 173

Query: 179 FKSLMHSKEK--PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           F S+   + K  P + T+ S++ +Y         + +F  M A    P+ + Y  ++  Y
Sbjct: 174 FNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAY 233

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                   A  IF+ + K G    + +  ++L AY  +  P +A  +F         P+ 
Sbjct: 234 ASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNK 293

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +Y  L  AY  A M +    LL  ME++GI P+
Sbjct: 294 VSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPD 327



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 126/279 (45%), Gaps = 3/279 (1%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A G F +M+   RCKP+   YN L+ A ++A        + +++  + + P   TYN V
Sbjct: 29  QARGLFFEMQEW-RCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNV 87

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++A G  G  K+   +  +M  N   PD++T N+++ +      + K    F+ +  +  
Sbjct: 88  INACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMKGANV 147

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTA--MKYTPSFITYECIITMYGYCDNVSRA 245
                T N +I    K    G+A  +F  M     K  P  +TY  I+  Y     V   
Sbjct: 148 TSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENC 207

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           + IFD +   G    +   N++L AY   G+  EA  +F      G+ PD  +Y  L  A
Sbjct: 208 KAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNA 267

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           Y ++   E  +++  +M++N   PNK  +   ++ + S+
Sbjct: 268 YGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSA 306


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 142/327 (43%), Gaps = 9/327 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ LI    KKG   LA+ +  +MRN GC+P+   Y  L+        K   + 
Sbjct: 380 VPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFC----KLGKID 435

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A     +M   +  KPN V +N L+ A  +   + +   +F+E+      PD+YT+N +
Sbjct: 436 EAYNLLNEMSA-DGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 494

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +    +   IK    +L  M S     + +T+N LI+++ +R    +  ++   ++    
Sbjct: 495 ISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGS 554

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRA 245
                T+NS+I    +A    KA  +F+KM      PS I+  C I + G C +  V  A
Sbjct: 555 LLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSIS--CNILINGLCRSGMVEEA 612

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            E   E+   G    + T N+++   C  G   +   +F      G+ PD+ TY  L   
Sbjct: 613 VEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSW 672

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKR 332
             K         LL    ++G VPN R
Sbjct: 673 LCKGGFVYDACLLLDEGIEDGFVPNDR 699



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 143/351 (40%), Gaps = 29/351 (8%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + ++ IY  LI  + K  +   A+ L  EM   GC PD   +N +I   L   D+    A
Sbjct: 243 VPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILG-LCKFDRINEAA 301

Query: 68  KALG-------------YFQKMKGMERC--------------KPNIVTYNILLRACAQAR 100
           K +              Y   M G+ +               KP  V +N L+       
Sbjct: 302 KMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHG 361

Query: 101 NVDQVNALFKELHESI-LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
            +D   A+  ++  S  + PD+ TYN ++  Y K G++     VL  M++  CKP++ ++
Sbjct: 362 RLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSY 421

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
            +L+D + K    D+   +   +     KP    FN +I  + K     +A  +F++M  
Sbjct: 422 TILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPR 481

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
               P   T+  +I+     D +  A  +  ++   G      T N ++ A+   G   E
Sbjct: 482 KGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKE 541

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           A  L       G   D  TY  L K   +A   +  + L ++M ++G+VP+
Sbjct: 542 ARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPS 592



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 132/297 (44%), Gaps = 11/297 (3%)

Query: 13  IYSKLIAVMG--KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           +YS  I V G  K G+   A  L +EM   G +P+   +N LI+A      K   + +A+
Sbjct: 418 VYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFC----KEHRIPEAV 473

Query: 71  GYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
             F++M  KG   CKP++ T+N L+    +   +     L +++    +  +  TYN ++
Sbjct: 474 EIFREMPRKG---CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLI 530

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           +A+ + G IKE   +++ M       D IT+N LI    +    DK   +F+ ++     
Sbjct: 531 NAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLV 590

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P+  + N +I    ++ +  +A    ++M     TP  +T+  +I        +     +
Sbjct: 591 PSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTM 650

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           F +L   G      T N ++   C  G   +A LL +     G  P+  T+ +L ++
Sbjct: 651 FRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQS 707



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 141/329 (42%), Gaps = 11/329 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           Q+ Y     +Y  LI  +G  G+ +    L  +M++ G     S++ +++  +    DKA
Sbjct: 98  QKGYRHSFDVYQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFISIMRDY----DKA 153

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNA-LFKELHESILAPDIY 122
               +      +M+ +  C+P   +YN++L       N  +V A +F ++    + P ++
Sbjct: 154 GFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSG-NCHKVAANVFYDMLSRKIPPTLF 212

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           T+  VM A      +    SVL  M  + C P+ + +  LI S  K    ++  Q+ + +
Sbjct: 213 TFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEM 272

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 P   TFN +I+   K     +A  +  +M    +TP  ITY  +  M G C  +
Sbjct: 273 FLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYL--MNGLC-KI 329

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKL 301
            R     D   ++ K   V   N ++  +  +G   +A  +L +   + G+ PD  TY  
Sbjct: 330 GRVDAAKDLFYRIPKPTSV-IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNS 388

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           L   Y K  +  L  ++L+ M   G  PN
Sbjct: 389 LIYGYWKKGLVGLALEVLRDMRNKGCKPN 417



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 5/167 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ LI  + + G+   A  LF +M   G  P     N LI     +    +A+ 
Sbjct: 555 LLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVE 614

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
                FQK   +    P+IVT+N L+    +A  ++    +F++L    + PD  TYN +
Sbjct: 615 -----FQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTL 669

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
           M    K G + +   +L     +   P+  T+++L+ S   ++  D+
Sbjct: 670 MSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQSLVPQETLDR 716



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 18/196 (9%)

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL---PTFNSMIINYGKARLQGKAEYVF 214
            + +LI   G    F  ++++   LM  K++  +     F S++ +Y KA   G+   + 
Sbjct: 107 VYQVLIGKLGSNGEFKTIDRL---LMQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLM 163

Query: 215 QKM-TAMKYTPSFITYECI--ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
            +M       P+F +Y  +  I + G C  V+ A   +D LS+      + T   +++A 
Sbjct: 164 LEMRNVYSCEPTFKSYNVVLEILVSGNCHKVA-ANVFYDMLSR-KIPPTLFTFGVVMKAL 221

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           C       A  +  +    G  P+S  Y+ L  + +K N      +LL+ M   G VP+ 
Sbjct: 222 CAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDA 281

Query: 332 RFFLEALETFSSSLAG 347
                  ETF+  + G
Sbjct: 282 -------ETFNDVILG 290


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 155/327 (47%), Gaps = 23/327 (7%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI      G+ +  +  F EM  +GC P+   YN LI A+     K   + +A G  
Sbjct: 217 YNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYC----KMGRIDEAFGLL 272

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           + M  KGM+   PN+++YN+++    +  ++ +   + +E+      PD  TYN +++ Y
Sbjct: 273 KSMSSKGMQ---PNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGY 329

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G   +   + + M  N   P ++T+  LI+S  K +  ++  + F  +     +P  
Sbjct: 330 CKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNE 389

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIF 249
            T+ ++I  + +  L  +A  +  +MT   ++PS +TY   I  +G+C  + +  A  + 
Sbjct: 390 RTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFI--HGHCVLERMEEALGVV 447

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKAY 306
            E+ + G    V + + ++  +C  G   E D  F+    M   GV+PD+ TY  L +  
Sbjct: 448 QEMVEKGLAPDVVSYSTIISGFCRKG---ELDRAFQMKQEMVEKGVSPDAVTYSSLIQGL 504

Query: 307 TKANMKELVQ--KLLKRMEQNGIVPNK 331
            +  M+ L +   L + M   G+ P++
Sbjct: 505 CE--MRRLTEACDLSQEMLDMGLPPDE 529



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 148/317 (46%), Gaps = 6/317 (1%)

Query: 15  SKLIAVMGKKGQTRL-AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           S L A++  +G  +L A  ++ EM  S   P+   YN LI       +    L K LG F
Sbjct: 182 SVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGE----LQKGLGCF 237

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+    C PN+VTYN L+ A  +   +D+   L K +    + P++ +YN +++   +
Sbjct: 238 GEME-RNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCR 296

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +KE   +L  M      PD +T+N L++ Y K   F +   +   ++ +   P++ T
Sbjct: 297 EGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVT 356

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + ++I +  KAR   +A   F +M      P+  TY  +I  +     ++ A  I +E++
Sbjct: 357 YTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMT 416

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G    V T NA +  +C+     EA  + +     G+ PD  +Y  +   + +    +
Sbjct: 417 ESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELD 476

Query: 314 LVQKLLKRMEQNGIVPN 330
              ++ + M + G+ P+
Sbjct: 477 RAFQMKQEMVEKGVSPD 493



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 137/293 (46%), Gaps = 3/293 (1%)

Query: 38  RNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACA 97
           ++SG  P    YN+++ A + +R   K  A+ + Y + ++   R  PN+ TYNIL+R   
Sbjct: 169 KSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEV-YREMIRS--RVSPNVYTYNILIRGFC 225

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
               + +    F E+  +   P++ TYN ++DAY K G I E   +L  M S   +P++I
Sbjct: 226 SVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLI 285

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           ++N++I+   +  +  +  ++ + + +    P   T+N+++  Y K     +A  +  +M
Sbjct: 286 SYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEM 345

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
                +PS +TY  +I       N++RA E FD++   G      T   +++ +   GL 
Sbjct: 346 VRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLL 405

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            EA  +       G +P   TY      +      E    +++ M + G+ P+
Sbjct: 406 NEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPD 458



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 146/319 (45%), Gaps = 9/319 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + ++G  + A  +  EM   G  PD   YN L+  +     K     +AL   
Sbjct: 287 YNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYC----KEGNFHQALVIH 342

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M       P++VTY  L+ +  +ARN+++    F ++    L P+  TY  ++D + +
Sbjct: 343 AEMV-RNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSR 401

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G++ E   +L+ M  +   P ++T+N  I  +   +  ++   V + ++     P + +
Sbjct: 402 QGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVS 461

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDE 251
           ++++I  + +     +A  + Q+M     +P  +TY  +I   G C+   ++ A ++  E
Sbjct: 462 YSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQ--GLCEMRRLTEACDLSQE 519

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +  +G      T   ++ AYC+ G   +A  L +   + G  PD+ TY +L     K   
Sbjct: 520 MLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQAR 579

Query: 312 KELVQKLLKRMEQNGIVPN 330
               ++LL ++     VP+
Sbjct: 580 TREAKRLLFKLIYEESVPS 598



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/376 (20%), Positives = 155/376 (41%), Gaps = 55/376 (14%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           + +  D   Y+ L+    K+G    A+ + +EM  +G  P    Y ALI +      KA+
Sbjct: 313 KGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMC----KAR 368

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            L +A+ +F +M+ +   +PN  TY  L+   ++   +++   +  E+ ES  +P + TY
Sbjct: 369 NLNRAMEFFDQMR-IRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTY 427

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N  +  +     ++E   V+  M      PD+++++ +I  + ++   D+  Q+ + ++ 
Sbjct: 428 NAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVE 487

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P   T++S+I    + R   +A  + Q+M  M   P   TY  +I  Y    ++++
Sbjct: 488 KGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNK 547

Query: 245 AREIFDELSKLG------------------------------------------------ 256
           A  + DE+   G                                                
Sbjct: 548 ALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIE 607

Query: 257 --KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
              +++  ++ A+++ +CM GL  EAD +FE+       P  + Y ++   + +      
Sbjct: 608 NCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPK 667

Query: 315 VQKLLKRMEQNGIVPN 330
              L K M  +G VP+
Sbjct: 668 AFNLYKEMIHSGFVPH 683



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 131/295 (44%), Gaps = 54/295 (18%)

Query: 55  AHLHTRDKAKA---LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNA--LF 109
           +HL+  D+A     LAK+ G+           P +++YN +L A  ++R   +++A  ++
Sbjct: 153 SHLNMIDQAVNTINLAKSSGFM----------PGVLSYNSVLDAIVRSRGSVKLSAEEVY 202

Query: 110 KELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR 169
           +E+  S ++P++YTYN ++  +   G +++       M+ N C P+++T+N LID     
Sbjct: 203 REMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLID----- 257

Query: 170 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
            A+ KM ++                              +A  + + M++    P+ I+Y
Sbjct: 258 -AYCKMGRI-----------------------------DEAFGLLKSMSSKGMQPNLISY 287

Query: 230 ECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
             II   G C   ++  A EI +E+   G      T N +L  YC  G   +A ++    
Sbjct: 288 NVIIN--GLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEM 345

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
              GV+P   TY  L  +  KA       +   +M   G+ PN+R +   ++ FS
Sbjct: 346 VRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFS 400



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 137/323 (42%), Gaps = 29/323 (8%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS +I+   +KG+   A  +  EM   G  PD   Y++LI      R     L +A
Sbjct: 458 DVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMR----RLTEA 513

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               Q+M  M    P+  TY  L+ A     ++++   L  E+      PD  TY+ +++
Sbjct: 514 CDLSQEMLDM-GLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLIN 572

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K    +E + +L ++   +  P  +T++ LI++    +        FKS++      
Sbjct: 573 GLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIE--------FKSVV------ 618

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRARE 247
                 ++I  +    L  +A+ VF+ M    + P    Y  II  +G+C   N+ +A  
Sbjct: 619 ------ALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVII--HGHCRGGNLPKAFN 670

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           ++ E+   G      T+  +++A    G+  E   +  ++       ++   K+L +   
Sbjct: 671 LYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEINH 730

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           K    E V  +L  M ++G++PN
Sbjct: 731 KEGNMEAVLNVLTDMAKDGLLPN 753


>gi|302141714|emb|CBI18917.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 147/328 (44%), Gaps = 42/328 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y ++I + GK G    A+  F+ M + GC+PD   ++ +I+    +  K +   +A  +F
Sbjct: 149 YMEMIDLAGKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVIS----SLSKKRRAIEAQSFF 204

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             +K  +R +P++V Y  L+    +A N+ +   +F E+  + + P++YTY+ V+DA  +
Sbjct: 205 DSLK--DRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCR 262

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G I     V S M    C P+ ITFN L+  + K    +K+ Q                
Sbjct: 263 SGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQ---------------- 306

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
                              V+ +M  +   P  ITY  +I  +   DN+  A +I + + 
Sbjct: 307 -------------------VYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVK 347

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           K G ++  S+ N +       G    A  +F    ++   P++ TY +L + +      +
Sbjct: 348 K-GCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTD 406

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETF 341
           +V KL K M++N I PN   +   + TF
Sbjct: 407 MVLKLRKEMDENEIEPNANTYRVLISTF 434



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 32/202 (15%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA------ 67
           ++ L+ V  K G+T   + ++++M+  GC PD   YN LI +H    +  +A+       
Sbjct: 288 FNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVK 347

Query: 68  ------------------------KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD 103
                                    A   F KMK + +C+PN VTYNIL+R  A  ++ D
Sbjct: 348 KGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDL-KCRPNTVTYNILMRMFADKKSTD 406

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC-KPDIITFNLL 162
            V  L KE+ E+ + P+  TY  ++  +   G      S    M   +C +P +  + ++
Sbjct: 407 MVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMV 466

Query: 163 IDSYGKRQAFDKMEQVFKSLMH 184
           +    K     K E++ + +++
Sbjct: 467 LQQLRKAGQLKKHEELVEKMVN 488


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 155/374 (41%), Gaps = 52/374 (13%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR  I D   YS LI  +  K +   A  LF  M+  GCRPD   Y  L+     T +  
Sbjct: 219 QRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGN-- 276

Query: 64  KALAKALGYFQKMK------GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
             +  AL   Q+M       G+ +CKP +++Y+I++    + R  D+   LFKE+    +
Sbjct: 277 --INTALQLHQEMLNDTGRYGI-KCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGI 333

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
            PD+ +Y  ++  +  +G  ++ + + + M     +PD+ T ++LID   K+    +  +
Sbjct: 334 MPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANK 393

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT--------- 228
           + + ++     P + T  +++          KA  +F KM  +   P+ +T         
Sbjct: 394 LLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLC 453

Query: 229 --------------------------------YECIITMYGYCDNVSRAREIFDELSKLG 256
                                           Y  II     C     ARE+F E+  LG
Sbjct: 454 QSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALG 513

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
               V +  +++  +C +G   +A  LF    ++GV PD +T+ +L     K        
Sbjct: 514 VIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEAN 573

Query: 317 KLLKRMEQNGIVPN 330
           +LL+ M Q G +PN
Sbjct: 574 ELLEVMIQRGCIPN 587



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 152/376 (40%), Gaps = 56/376 (14%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR  I D   YS LI  +  K +   A  LF  M+  GCRPD   Y  L+     T    
Sbjct: 38  QRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQT---- 93

Query: 64  KALAKALGYFQKMK------GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
             +  AL   Q+M       G+ +CKP +V+Y+I++    + R  D+   LFKE+    +
Sbjct: 94  GKINIALHLHQEMLNDTSQYGI-KCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGM 152

Query: 118 APDIYTYNG-----------------------------------VMDAYGKNGMIKEMES 142
            PD+ +Y                                     ++D   K G + E   
Sbjct: 153 MPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANE 212

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +L  M    C  DI+T++ LI     +    +  ++F S+     +P    + +++    
Sbjct: 213 LLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLC 272

Query: 203 KARLQGKAEYVFQKMT------AMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSK 254
           +      A  + Q+M        +K  P+ I+Y  II   G C +     ARE+F E+  
Sbjct: 273 QTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIID--GLCKDRREDEARELFKEMKA 330

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
            G    V +   ++  +C++G   +A  LF    ++G+ PD +T  +L     K      
Sbjct: 331 QGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIE 390

Query: 315 VQKLLKRMEQNGIVPN 330
             KLL+ + Q G +P+
Sbjct: 391 ANKLLEVVIQRGCIPD 406



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 146/334 (43%), Gaps = 15/334 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K +  + D   Y+ LI      G+   A  LF+EM + G +PD +  + LI   L  + K
Sbjct: 329 KAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDM-LCKKGK 387

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
                K L    +      C P++VT   L++       + +   LF ++ +    P++ 
Sbjct: 388 VIEANKLLEVVIQ----RGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVV 443

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSN------QCKPDIITFNLLIDSYGKRQAFDKME 176
           T   +M    ++G IK    +   M S+       CKP+ I+++++ID   K    D+  
Sbjct: 444 TCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEAR 503

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           ++FK +      P + ++ S+I  + ++     A+Y+F +M  +   P   T+  +I M 
Sbjct: 504 ELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDML 563

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                V  A E+ + + + G      T   +++  CMN   +EA  LF     +G  PD 
Sbjct: 564 CKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDV 623

Query: 297 STYKLLYKAYTK-ANMK---ELVQKLLKRMEQNG 326
            TY  L K   +  N+K   EL +K+L    Q G
Sbjct: 624 VTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYG 657



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 146/337 (43%), Gaps = 13/337 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR  I D    + L+  +  K +   A  LF +M+  GC P+      L+     + +  
Sbjct: 400 QRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIK 459

Query: 64  KALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            AL             G+  CKPN ++Y+I++    +    D+   LFKE+    + PD+
Sbjct: 460 IALELHKNMLSDTSPYGI-NCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDV 518

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            +Y  ++  + ++G  K+ + + + M     +PD+ TF++LID   K     +  ++ + 
Sbjct: 519 ISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEV 578

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD- 240
           ++     P   T+ +++          +A  +F KM  +   P  +TY  +  M G C  
Sbjct: 579 MIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTL--MKGLCQT 636

Query: 241 -NVSRAREI----FDELSKLGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
            N+  A E+      +  + G + K  V + + +++  C +G   EA  LF+    +GV 
Sbjct: 637 GNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVI 696

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           P+  +Y  L   + ++   E  + L   M   G+  N
Sbjct: 697 PNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLN 733



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 158/353 (44%), Gaps = 29/353 (8%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D    S LI ++ KKG+   A  L   +   GC PD      L+   L  + +   ++KA
Sbjct: 371 DVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKG-LCMKHR---ISKA 426

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA----------P 119
              F KM+ +  C PN+VT   L++   Q+ N+     +  ELH+++L+          P
Sbjct: 427 TQLFLKMQKL-GCMPNVVTCATLMKGLCQSGNI----KIALELHKNMLSDTSPYGINCKP 481

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           +  +Y+ ++D   K G   E   +   MK+    PD+I++  LI  + +   +   + +F
Sbjct: 482 NAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLF 541

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             ++    +P + TF+ +I    K     +A  + + M      P+ +TY  ++   G C
Sbjct: 542 NEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVK--GLC 599

Query: 240 --DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTEADL---LFENSHNMGVT 293
             D +S A ++F ++ KLG    V T   +++  C  G + T  +L   +  ++   G  
Sbjct: 600 MNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTN 659

Query: 294 --PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             PD  +Y ++     K   ++  ++L K M+  G++PN   +   +  F  S
Sbjct: 660 FKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRS 712



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 121/281 (43%), Gaps = 50/281 (17%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K    I D   Y+ LI    + G+ + A +LF+EM + G +PD + ++ LI   +  ++ 
Sbjct: 510 KALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLI--DMLCKEG 567

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
               A  L      +G   C PN VTY  L++       + +   LF ++ +    PD+ 
Sbjct: 568 KVIEANELLEVMIQRG---CIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVV 624

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSN------QCKPDIITFNLLIDSYGKRQAFDKME 176
           TY  +M    + G IK    +  +M S+        KPD+I+++++ID   K        
Sbjct: 625 TYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCK-------- 676

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
                  H +E                     +A  +F++M A+   P+ I+Y  +I  +
Sbjct: 677 -------HGRED--------------------EARELFKEMKALGVIPNVISYTSLI--H 707

Query: 237 GYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
           G+C +  +  A+ +F+E+   G  +   T + M+  +C  G
Sbjct: 708 GFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEG 748



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 114/256 (44%), Gaps = 10/256 (3%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P++ T  +L+    +   V + N L + + +     DI TY+ ++        I E   
Sbjct: 7   QPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQ 66

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS------KEKPTLPTFNS 196
           +   MK   C+PD I +  L+    +    +    + + +++       K KPTL +++ 
Sbjct: 67  LFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSI 126

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSK 254
           +I    K R + +A  +F++M A    P  I+Y  +I  +G+C +    +A+ +F+E+  
Sbjct: 127 IIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLI--HGFCRSGKWEKAKCLFNEMLD 184

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
           +G    V+T + +++  C  G   EA+ L E     G   D  TY  L K     +    
Sbjct: 185 VGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISE 244

Query: 315 VQKLLKRMEQNGIVPN 330
             +L   M++ G  P+
Sbjct: 245 ATRLFMSMQKLGCRPD 260



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 84/176 (47%), Gaps = 9/176 (5%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR  I +T  Y+ L+  +    +   A  LF +M+  GC PD   Y  L+     T +  
Sbjct: 581 QRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGN-- 638

Query: 64  KALAKALGYFQKM-----KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
             +  AL   +KM     +     KP++++Y+I++    +    D+   LFKE+    + 
Sbjct: 639 --IKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVI 696

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
           P++ +Y  ++  + ++G +++ + + + M     + + +T++++I  + K    DK
Sbjct: 697 PNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDK 752


>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial [Vitis vinifera]
          Length = 531

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 163/336 (48%), Gaps = 11/336 (3%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           +KQ+ +   T  Y+ LI  +GK  Q ++   L ++MR+ G     +   ALI+       
Sbjct: 136 EKQKGFKYSTENYNALIEALGKIKQFKMIWNLVNDMRSKGLLTQETF--ALISRRYA--- 190

Query: 62  KAKALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
           +A+ + +A+  F+KM+  G++   P +  +N LL A  ++R+V++   +F ++ +    P
Sbjct: 191 RARKVKEAVETFEKMEKFGLQ---PVLSDFNRLLDALCKSRHVERAQEVFDKMKDRKFRP 247

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           DI +Y  +++ +G+   +  ++ V   MK    +PD +T+ +LI+++ K + +D   ++F
Sbjct: 248 DIKSYTILLEGWGQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHCKARRYDAAVELF 307

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             +  +K  PT   + ++I   G  R   +A   F++  A  +TP   TY  ++  Y   
Sbjct: 308 HKMEANKCMPTPHIYCTLINGLGSERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQS 367

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN-SHNMGVTPDSST 298
             +  A  I DE+ K G   +  T + +L          EA  +F+  S   G  P  ST
Sbjct: 368 MRMDDAYRIVDEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGMSSEPGCEPSVST 427

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           Y+++ + +      ++  ++   M+  G++P    F
Sbjct: 428 YEIVVRMFCNEERVDMALRVWDEMKAKGVLPGMHMF 463



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 141/312 (45%), Gaps = 6/312 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +++L+  + K      A  +F +M++   RPD   Y  L    L    + + L +    +
Sbjct: 217 FNRLLDALCKSRHVERAQEVFDKMKDRKFRPDIKSYTIL----LEGWGQEQNLLRLDEVY 272

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++MK  E  +P+ VTY IL+ A  +AR  D    LF ++  +   P  + Y  +++  G 
Sbjct: 273 REMKD-EGFEPDAVTYGILINAHCKARRYDAAVELFHKMEANKCMPTPHIYCTLINGLGS 331

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              + E      R K++   P+  T+N ++ SY +    D   ++   +      P   T
Sbjct: 332 ERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQSMRMDDAYRIVDEMRKCGVGPQTRT 391

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           ++ ++ +  KAR   +A  VFQ M++     PS  TYE ++ M+   + V  A  ++DE+
Sbjct: 392 YDIILHHLIKARRTKEAYRVFQGMSSEPGCEPSVSTYEIVVRMFCNEERVDMALRVWDEM 451

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G    +   + ++ + C      EA   F    +MG+ P ++ +  L +       +
Sbjct: 452 KAKGVLPGMHMFSTLINSLCYENKLDEACKYFHEMLDMGIRPPAAMFSNLKQTLLDEGKQ 511

Query: 313 ELVQKLLKRMEQ 324
           ++V  L +++++
Sbjct: 512 DMVLILAQKLDK 523



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 93/212 (43%), Gaps = 18/212 (8%)

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +N LI++ GK + F KM     + M SK   T  TF  +   Y +AR   +A   F+KM 
Sbjct: 148 YNALIEALGKIKQF-KMIWNLVNDMRSKGLLTQETFALISRRYARARKVKEAVETFEKME 206

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELS--KLGKDMKVSTLNAMLEAYCMNGL 276
                P    +  ++       +V RA+E+FD++   K   D+K  T+  +LE +     
Sbjct: 207 KFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRKFRPDIKSYTI--LLEGWGQEQN 264

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP------- 329
               D ++    + G  PD+ TY +L  A+ KA   +   +L  +ME N  +P       
Sbjct: 265 LLRLDEVYREMKDEGFEPDAVTYGILINAHCKARRYDAAVELFHKMEANKCMPTPHIYCT 324

Query: 330 ------NKRFFLEALETFSSSLAGSQSGSAKT 355
                 ++R   EAL+ F  S A   +  A T
Sbjct: 325 LINGLGSERRLTEALQFFERSKASGFTPEAPT 356


>gi|440800754|gb|ELR21789.1| pentatricopeptide repeat domain/PPR repeatcontaining protein
           [Acanthamoeba castellanii str. Neff]
          Length = 559

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 153/334 (45%), Gaps = 9/334 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           ++  L+   G+ G  +    +  +MR  G RP  S Y  LI A      KA  L +    
Sbjct: 100 VFDVLLQGYGRAGDRQRLAQVQRDMREVGVRPGMSTYTILIDAW----GKAGDLRRMWQA 155

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI---LAPDIYTYNGVMD 129
           ++ M+  +  +PN+V Y  ++    +  +V  +   F E+  S    + P+  TYN ++ 
Sbjct: 156 WEDMR-EQGLRPNVVVYTSVIATLGKLGDVAAMERTFAEMQRSSGDGVEPNRTTYNAMVH 214

Query: 130 AYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           +YG+  M+ +ME+++ RM+++     D  T + ++ ++ +    DK  + F S+  +  +
Sbjct: 215 SYGQQQMMDKMEALVERMRADPGLGLDNFTHSAVVAAWSRAGRVDKALEAFDSIAATGGQ 274

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P+L  + +++   G A    +      KM  +   PS   Y  II  +G   N+    + 
Sbjct: 275 PSLHAWTAILHMLGTAGRSDEMLRTLDKMKRLGVKPSTAVYNTIINAFGKARNIHSMMDT 334

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F  + + G    V T N +++ +   G   EA+  +      G+ P   T   L  AYT+
Sbjct: 335 FKAMRRDGVAADVKTYNTLIDTWAKTGKAVEAEKFYVLMKREGLQPTMYTIASLMDAYTR 394

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           A+  E V +L+ RM++ G  P+   F   ++T+ 
Sbjct: 395 ADQFEKVLRLISRMKKEGRAPDNVVFNLLIDTYG 428



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 123/266 (46%), Gaps = 10/266 (3%)

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           +  +++LL+   +A +  ++  + +++ E  + P + TY  ++DA+GK G ++ M     
Sbjct: 98  LAVFDVLLQGYGRAGDRQRLAQVQRDMREVGVRPGMSTYTILIDAWGKAGDLRRMWQAWE 157

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE---KPTLPTFNSMIINYG 202
            M+    +P+++ +  +I + GK      ME+ F  +  S     +P   T+N+M+ +YG
Sbjct: 158 DMREQGLRPNVVVYTSVIATLGKLGDVAAMERTFAEMQRSSGDGVEPNRTTYNAMVHSYG 217

Query: 203 KARLQGKAEYVFQKMTAMKYTPSF----ITYECIITMYGYCDNVSRAREIFDELSKLGKD 258
           + ++  K E + ++M A    P       T+  ++  +     V +A E FD ++  G  
Sbjct: 218 QQQMMDKMEALVERMRA---DPGLGLDNFTHSAVVAAWSRAGRVDKALEAFDSIAATGGQ 274

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
             +    A+L      G   E     +    +GV P ++ Y  +  A+ KA     +   
Sbjct: 275 PSLHAWTAILHMLGTAGRSDEMLRTLDKMKRLGVKPSTAVYNTIINAFGKARNIHSMMDT 334

Query: 319 LKRMEQNGIVPNKRFFLEALETFSSS 344
            K M ++G+  + + +   ++T++ +
Sbjct: 335 FKAMRRDGVAADVKTYNTLIDTWAKT 360



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 141/346 (40%), Gaps = 39/346 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI   GK G  R     + +MR  G RP+  VY ++I A L       A+ +     
Sbjct: 136 YTILIDAWGKAGDLRRMWQAWEDMREQGLRPNVVVYTSVI-ATLGKLGDVAAMERTFAEM 194

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL------------HESILA--- 118
           Q+  G +  +PN  TYN ++ +  Q + +D++ AL + +            H +++A   
Sbjct: 195 QRSSG-DGVEPNRTTYNAMVHSYGQQQMMDKMEALVERMRADPGLGLDNFTHSAVVAAWS 253

Query: 119 ---------------------PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
                                P ++ +  ++   G  G   EM   L +MK    KP   
Sbjct: 254 RAGRVDKALEAFDSIAATGGQPSLHAWTAILHMLGTAGRSDEMLRTLDKMKRLGVKPSTA 313

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
            +N +I+++GK +    M   FK++        + T+N++I  + K     +AE  +  M
Sbjct: 314 VYNTIINAFGKARNIHSMMDTFKAMRRDGVAADVKTYNTLIDTWAKTGKAVEAEKFYVLM 373

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
                 P+  T   ++  Y   D   +   +   + K G+       N +++ Y   G P
Sbjct: 374 KREGLQPTMYTIASLMDAYTRADQFEKVLRLISRMKKEGRAPDNVVFNLLIDTYGRMGKP 433

Query: 278 TEAD-LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
            EA+ +L       G+  +++ +  + +A+ +    +  ++ L RM
Sbjct: 434 EEAEKVLCGAMKEYGIALETNNFTSVIEAWARNGNLDKAEEWLHRM 479



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 7/190 (3%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T +Y+ +I   GK       M  F  MR  G   D   YN LI     T    KA+ +A 
Sbjct: 312 TAVYNTIINAFGKARNIHSMMDTFKAMRRDGVAADVKTYNTLIDTWAKT---GKAV-EAE 367

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
            ++  MK  E  +P + T   L+ A  +A   ++V  L   + +   APD   +N ++D 
Sbjct: 368 KFYVLMK-REGLQPTMYTIASLMDAYTRADQFEKVLRLISRMKKEGRAPDNVVFNLLIDT 426

Query: 131 YGKNGMIKEMESVL-SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL-MHSKEK 188
           YG+ G  +E E VL   MK      +   F  +I+++ +    DK E+    +      K
Sbjct: 427 YGRMGKPEEAEKVLCGAMKEYGIALETNNFTSVIEAWARNGNLDKAEEWLHRMNTDYATK 486

Query: 189 PTLPTFNSMI 198
           P + T  +++
Sbjct: 487 PDIKTLTTLL 496


>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Glycine max]
          Length = 521

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 143/317 (45%), Gaps = 5/317 (1%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           L+  +   G+  LA  L   +   G + +  VYNALI          KA+   +  F   
Sbjct: 195 LVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMK--IKAFMSR 252

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
            G   C P++VTYNILL  C +   VD+   L + +  S + PD+Y+YN ++  + K  M
Sbjct: 253 TG---CVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANM 309

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           +     ++      +   D++++N +I ++ K +   K  ++F+ +     +P + TFN 
Sbjct: 310 VDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFEEMCGKGIRPDMVTFNI 369

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           +I  + +       + +  +MT M+  P  I Y  ++        V  A  +F ++ + G
Sbjct: 370 LIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENG 429

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
            +  V + NA+L  +C      +A  LF+   + G+ PD  TYKL+     +     L  
Sbjct: 430 VNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLAC 489

Query: 317 KLLKRMEQNGIVPNKRF 333
           ++  +M + G   N+  
Sbjct: 490 RVWDQMMERGFTLNRHL 506



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 127/272 (46%), Gaps = 12/272 (4%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ L+    ++G    A+ L   M  SG  PD   YN L+        KA  + 
Sbjct: 256 VPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFC----KANMVD 311

Query: 68  KA-LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +A L   ++M+    C  ++V+YN ++ A  +AR   +   LF+E+    + PD+ T+N 
Sbjct: 312 RAHLMMVERMQTKGMC--DVVSYNTVITAFCKARRTRKGYELFEEMCGKGIRPDMVTFNI 369

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++DA+ + G    ++ +L  M   +  PD I +  ++D   K    D    VF+ ++ + 
Sbjct: 370 LIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENG 429

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P + ++N+++  + K      A ++F +M +    P  +TY+ I+        +S A 
Sbjct: 430 VNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLAC 489

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
            ++D++ + G      TLN  L    +N + +
Sbjct: 490 RVWDQMMERG-----FTLNRHLSETLVNAIQS 516



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 141/322 (43%), Gaps = 16/322 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL-HTRDKAKALAKALGY 72
           Y   I+ + K G    A++LF +M  S CR     YN  I   L H+R     L  A  Y
Sbjct: 13  YRSQISKLVKAGLINQAIYLFDQMTESNCRVFSVDYNRFIGVLLRHSR-----LHLAHHY 67

Query: 73  FQKMKGMERCKPNIVTYNILLRA-CAQARNVDQ--VNALFKELHESILAPDIYTYNGVMD 129
           +++            TY+  + A C+   N++   +++L  ++      PDI+ +N  ++
Sbjct: 68  YRRHVIPRGFSLLPFTYSRFISALCSAPNNINLPLIHSLLLDMDSLGFVPDIWAFNTYLN 127

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              +   ++    +   M S    PD++++ ++ID+    + FD+  +V++ L+     P
Sbjct: 128 LLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLSP 187

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAM---KYTPSFITYECIITMYGYCDNVSRAR 246
                 ++++        G+ +  ++ +  +       + + Y  +I  +     V +A 
Sbjct: 188 DYKACVALVVGLCSG---GRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAM 244

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           +I   +S+ G    + T N +L   C  G+  EA  L E     GV PD  +Y  L K +
Sbjct: 245 KIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGF 304

Query: 307 TKANMKELVQ-KLLKRMEQNGI 327
            KANM +     +++RM+  G+
Sbjct: 305 CKANMVDRAHLMMVERMQTKGM 326


>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
          Length = 770

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 120/244 (49%)

Query: 87  VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 146
           +TYNI+++ C +A  +++   L  ++ +    PD++T+N  + AY   G ++++  +L +
Sbjct: 498 ITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQ 557

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           MKS   KPDI+T+  +ID Y K +   K  +    L+ +  +P    +N++I  YG+   
Sbjct: 558 MKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRPNAVIYNALIGGYGRNGS 617

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
              A  V   M      P+ ITY  ++    +   V  A+EIF +      ++ V     
Sbjct: 618 ISDAIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQCILKNIELGVIGYTI 677

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           +++ +C  G   EA + F+  H   + P+  TY  L  AY K   KE   KL   M  +G
Sbjct: 678 IIQGFCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKCGNKEEAFKLFDEMVSSG 737

Query: 327 IVPN 330
           IVP+
Sbjct: 738 IVPD 741



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 123/249 (49%), Gaps = 2/249 (0%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHE-SILAPDIYTYNGVMDAYGKNGMIKEMES 142
           P+I T NIL+ A      +D    +F E+ + + +APD+YTY  ++ A  + G I     
Sbjct: 178 PSIKTCNILVEALGCGGQLDLARKVFGEMRDGNAVAPDVYTYTVMIKALCRAGEIDAAFV 237

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +L+ ++ +  +P ++T+N+L+D+  +    ++  Q+   ++  + +P++ TF  +I    
Sbjct: 238 MLAELERSGIQPTVVTYNVLMDALCRSGRVEEAFQLKGRMVEGRLRPSIVTFGILINGLA 297

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           + +  G+ + V Q+M     TP+ + Y  +I  +    + S A  +FDE+   G    V 
Sbjct: 298 RGQRFGEVDAVLQEMEGFGITPNEVIYNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVV 357

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK-ELVQKLLKR 321
           T N + +A C  G    A+ + +     G+T   S +  +   + +   + ++V +L++ 
Sbjct: 358 TYNLIAKALCKEGEMEHAEQILDEMLLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIRE 417

Query: 322 MEQNGIVPN 330
           M    + PN
Sbjct: 418 MVARFLKPN 426



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 122/271 (45%), Gaps = 11/271 (4%)

Query: 8   IADTGI------YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           + D+G+      Y+ +I    K  +   A+ L  +M   G +PD   +N  + A+ +   
Sbjct: 488 MVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNL-- 545

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
               +   L    +MK  E  KP+IVTY  ++    +A++V + N    EL ++ L P+ 
Sbjct: 546 --GKVEDILHLLDQMKS-EGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRPNA 602

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
             YN ++  YG+NG I +   VL  MK N  +P  IT+N L+         ++ +++F  
Sbjct: 603 VIYNALIGGYGRNGSISDAIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQ 662

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
            +    +  +  +  +I  + K     +A   F++M      P+ +TY  ++  Y  C N
Sbjct: 663 CILKNIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKCGN 722

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
              A ++FDE+   G      + N ++   C
Sbjct: 723 KEEAFKLFDEMVSSGIVPDTVSYNTLISGCC 753



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 136/353 (38%), Gaps = 48/353 (13%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYN---------------------- 50
           IY++LI    ++G    A+ LF EM + G +     YN                      
Sbjct: 323 IYNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEQILDEM 382

Query: 51  --ALITAHL---------HTRDKAKALAKALGYFQKMKGMERCKPN-IVTYNILLRACAQ 98
             A +T H          H R   + L   L   ++M      KPN  V    +   C +
Sbjct: 383 LLAGMTVHCSLFNSVVAWHLRGTGR-LDVVLRLIREMVA-RFLKPNDAVMTACIQELCKR 440

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
            ++ +     F  L +  L  +I T N ++    +   +KE   VL  M  +  + D IT
Sbjct: 441 GKHEEAAEIWFLVLGKG-LGVNIATSNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRIT 499

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +N++I    K    ++  Q+   ++    KP L TFN+ +  Y      GK E +   + 
Sbjct: 500 YNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNL---GKVEDILHLLD 556

Query: 219 AMK---YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            MK     P  +TY  II  Y    +V +A +   EL K G        NA++  Y  NG
Sbjct: 557 QMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRPNAVIYNALIGGYGRNG 616

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE-----LVQKLLKRME 323
             ++A  + +   + G+ P   TY  L      A + E       Q +LK +E
Sbjct: 617 SISDAIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQCILKNIE 669



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/252 (19%), Positives = 111/252 (44%), Gaps = 9/252 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R +  D   ++  +      G+    + L  +M++ G +PD   Y  +I  +     KA
Sbjct: 525 KRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYC----KA 580

Query: 64  KALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           K + KA  Y  ++   G+   +PN V YN L+    +  ++     +   +  + + P  
Sbjct: 581 KDVHKANKYLIELIKNGL---RPNAVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQPTP 637

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TYN +M      G+++E + + ++      +  +I + ++I  + K    D+    FK 
Sbjct: 638 ITYNSLMYWMCHAGLVEEAKEIFAQCILKNIELGVIGYTIIIQGFCKIGKIDEAVMYFKE 697

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           + +   +P   T+ +++  Y K   + +A  +F +M +    P  ++Y  +I+     D+
Sbjct: 698 MHYRDIRPNKMTYTTLMYAYCKCGNKEEAFKLFDEMVSSGIVPDTVSYNTLISGCCEVDS 757

Query: 242 VSRAREIFDELS 253
           + +  E   E+S
Sbjct: 758 LDKIVESPAEMS 769


>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
 gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
          Length = 844

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 152/316 (48%), Gaps = 5/316 (1%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S +I+  G++G    A   F E+++SG  P    YNAL    L    KA   ++AL   +
Sbjct: 307 STVISACGREGLINEAKEFFVELKSSGYEPGTVTYNAL----LQVFGKAGIYSEALNILK 362

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M+    C  + VTYN L+ A  +A   ++   +   +    + P+  TY  V++AYG+ 
Sbjct: 363 EMED-NNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRA 421

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G   +   + ++MK + C P++ T+N ++   GK+   ++M ++   +  +   P   T+
Sbjct: 422 GKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITW 481

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N+++   G         +VF++M    + P   T+  +I+ YG C +   A +++DE+ K
Sbjct: 482 NTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMK 541

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
            G     +T NA+L A    G    A+ +  +  N G  P+ +++ L+   Y K      
Sbjct: 542 AGFTPCATTYNALLNALARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRG 601

Query: 315 VQKLLKRMEQNGIVPN 330
           ++++ K +    I P+
Sbjct: 602 LERIGKDIYDGQIFPS 617



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 141/319 (44%), Gaps = 7/319 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L+A+ G KG+ +    +F EM+N G  P    +N LI+A+         L  A  Y 
Sbjct: 481 WNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRC---GSELDAAKMYD 537

Query: 74  QKMK-GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           + MK G   C     TYN LL A A+  +     ++  ++      P+  +++ ++  Y 
Sbjct: 538 EMMKAGFTPCA---TTYNALLNALARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYA 594

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G ++ +E +   +   Q  P  +    LI +  K +A   ME+ F+ LM +  KP + 
Sbjct: 595 KGGNVRGLERIGKDIYDGQIFPSWVLLRTLILANFKCRAVRGMERAFEELMKNGYKPDMV 654

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            FNSM+  + K  +  +A+ +   +      P  +TY  ++ MY       +A EI   L
Sbjct: 655 IFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAEEILKGL 714

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            K G+   + + N +++ +C  GL  EA  +       G+ P   TY      Y    M 
Sbjct: 715 IKSGESPDLVSYNTIIKGFCRQGLMQEAIRVMSEMTTRGICPCIFTYNTFVSGYAGRGMF 774

Query: 313 ELVQKLLKRMEQNGIVPNK 331
             V +++  M Q    PN+
Sbjct: 775 AEVDEVISYMIQKNCKPNE 793



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 151/369 (40%), Gaps = 52/369 (14%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K   Y   T  Y+ L+ V GK G    A+ +  EM ++ C  D   YN L+ A++     
Sbjct: 330 KSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVRA--- 386

Query: 63  AKALAKALGYFQK----MKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
                   G++++    +  M R    PN VTY  ++ A  +A    +   LF ++ +S 
Sbjct: 387 --------GFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSG 438

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
             P++ TYN ++   GK    +EM  +LS M+ N C P+ IT+N L+   G +     + 
Sbjct: 439 CVPNVCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVN 498

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
            VF+ + +   +P   TFN++I  YG+   +  A  ++ +M    +TP   TY  ++   
Sbjct: 499 HVFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNAL 558

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-----------------LPTE 279
               +   A  +  ++   G     ++ + ML  Y   G                  P+ 
Sbjct: 559 ARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSW 618

Query: 280 ADL------------------LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
             L                   FE     G  PD   +  +   + K NM E  QK+L  
Sbjct: 619 VLLRTLILANFKCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDL 678

Query: 322 MEQNGIVPN 330
           + ++G+ P+
Sbjct: 679 IRESGLQPD 687



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 156/339 (46%), Gaps = 24/339 (7%)

Query: 14  YSKLIAVMGKKGQTRLAMW-----LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           Y+ ++ V GK G++    W     L  EMRN G + D    + +I+A      +   + +
Sbjct: 270 YNVMLDVYGKMGRS----WDKILDLLDEMRNEGLQFDEFTCSTVISAC----GREGLINE 321

Query: 69  ALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A  +F ++K  G E   P  VTYN LL+   +A    +   + KE+ ++    D  TYN 
Sbjct: 322 AKEFFVELKSSGYE---PGTVTYNALLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNE 378

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++ AY + G  +E  +V+  M      P+ +T+  +I++YG+     K  Q+F  +  S 
Sbjct: 379 LVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSG 438

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT---PSFITYECIITMYGYCDNVS 243
             P + T+NS++   GK   + ++E + + ++ M+     P+ IT+  ++ M G      
Sbjct: 439 CVPNVCTYNSILALLGK---KSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKGKHK 495

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
               +F E+   G +    T N ++ AY   G   +A  +++     G TP ++TY  L 
Sbjct: 496 FVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALL 555

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            A  +    +  + +L  M   G  PN+  F   L  ++
Sbjct: 556 NALARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYA 594



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 139/298 (46%), Gaps = 9/298 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI+  G+ G    A  ++ EM  +G  P  + YNAL+ A L  R   KA A+++   
Sbjct: 516 FNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNA-LARRGDWKA-AESVLLD 573

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            + KG    KPN  +++++L   A+  NV  +  + K++++  + P       ++ A  K
Sbjct: 574 MRNKGF---KPNETSFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSWVLLRTLILANFK 630

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              ++ ME     +  N  KPD++ FN ++  + K   +++ +++   +  S  +P L T
Sbjct: 631 CRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLVT 690

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDE 251
           +NS++  Y +     KAE + + +     +P  ++Y  II   G+C    +  A  +  E
Sbjct: 691 YNSLMNMYARRGECWKAEEILKGLIKSGESPDLVSYNTIIK--GFCRQGLMQEAIRVMSE 748

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           ++  G    + T N  +  Y   G+  E D +          P+  TYK++   Y KA
Sbjct: 749 MTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVISYMIQKNCKPNELTYKIIVDGYCKA 806



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 104/212 (49%), Gaps = 1/212 (0%)

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-QAFDKMEQV 178
           D+     ++ AY +NG  K+  ++  RMK     P ++T+N+++D YGK  +++DK+  +
Sbjct: 231 DVRACTTILHAYSRNGKYKQAIAMFERMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILDL 290

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
              + +   +    T +++I   G+  L  +A+  F ++ +  Y P  +TY  ++ ++G 
Sbjct: 291 LDEMRNEGLQFDEFTCSTVISACGREGLINEAKEFFVELKSSGYEPGTVTYNALLQVFGK 350

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
               S A  I  E+      +   T N ++ AY   G   E   + +     GV P++ T
Sbjct: 351 AGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVT 410

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y  +  AY +A  +    +L  +M+++G VPN
Sbjct: 411 YTTVINAYGRAGKEVKALQLFNQMKKSGCVPN 442



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 117/254 (46%), Gaps = 8/254 (3%)

Query: 86  IVTYNILLRAC-----AQARN--VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-I 137
           I  Y++ +RAC     A +RN    Q  A+F+ + +  L+P + TYN ++D YGK G   
Sbjct: 225 IDKYSLDVRACTTILHAYSRNGKYKQAIAMFERMKDCGLSPSLVTYNVMLDVYGKMGRSW 284

Query: 138 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 197
            ++  +L  M++   + D  T + +I + G+    ++ ++ F  L  S  +P   T+N++
Sbjct: 285 DKILDLLDEMRNEGLQFDEFTCSTVISACGREGLINEAKEFFVELKSSGYEPGTVTYNAL 344

Query: 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK 257
           +  +GKA +  +A  + ++M     T   +TY  ++  Y           + D +++ G 
Sbjct: 345 LQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGV 404

Query: 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
                T   ++ AY   G   +A  LF      G  P+  TY  +     K +  E + K
Sbjct: 405 MPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMIK 464

Query: 318 LLKRMEQNGIVPNK 331
           +L  M  NG  PN+
Sbjct: 465 ILSDMRINGCPPNR 478



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 89/176 (50%), Gaps = 10/176 (5%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD--KAK 64
           Y  D  I++ ++++  K      A  +   +R SG +PD   YN+L+  +    +  KA+
Sbjct: 649 YKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAE 708

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            + K L     +K  E   P++V+YN +++   +   + +   +  E+    + P I+TY
Sbjct: 709 EILKGL-----IKSGE--SPDLVSYNTIIKGFCRQGLMQEAIRVMSEMTTRGICPCIFTY 761

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF-DKMEQVF 179
           N  +  Y   GM  E++ V+S M    CKP+ +T+ +++D Y K + + D M+ +F
Sbjct: 762 NTFVSGYAGRGMFAEVDEVISYMIQKNCKPNELTYKIIVDGYCKARKYQDAMDFIF 817



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 92/185 (49%), Gaps = 12/185 (6%)

Query: 34  FSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER---CKPNIVTYN 90
           F E+  +G +PD  ++N++++         +A        QKM  + R    +P++VTYN
Sbjct: 641 FEELMKNGYKPDMVIFNSMLSIFAKNNMYERA--------QKMLDLIRESGLQPDLVTYN 692

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
            L+   A+     +   + K L +S  +PD+ +YN ++  + + G+++E   V+S M + 
Sbjct: 693 SLMNMYARRGECWKAEEILKGLIKSGESPDLVSYNTIIKGFCRQGLMQEAIRVMSEMTTR 752

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR-LQGK 209
              P I T+N  +  Y  R  F ++++V   ++    KP   T+  ++  Y KAR  Q  
Sbjct: 753 GICPCIFTYNTFVSGYAGRGMFAEVDEVISYMIQKNCKPNELTYKIIVDGYCKARKYQDA 812

Query: 210 AEYVF 214
            +++F
Sbjct: 813 MDFIF 817



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 108/277 (38%), Gaps = 37/277 (13%)

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG-MIKEMESVLSRMKS 149
           I L     A   D +NALF  +   +L  DI +    +D  GK+   I   E V+S   S
Sbjct: 131 ICLLNSIAAEPFDSLNALFDSVKSELLEVDIVSLLKALDVLGKSERAILLFEWVVSNSVS 190

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
              K D     L+I   G+   +    ++   +   K    +    +++  Y +     +
Sbjct: 191 GDVKLDSKAVELMIRILGRESKYSIALKLLDKIPIDKYSLDVRACTTILHAYSRNGKYKQ 250

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYG--------------------------YCDNV- 242
           A  +F++M     +PS +TY  ++ +YG                           C  V 
Sbjct: 251 AIAMFERMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILDLLDEMRNEGLQFDEFTCSTVI 310

Query: 243 ---------SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
                    + A+E F EL   G +    T NA+L+ +   G+ +EA  + +   +   T
Sbjct: 311 SACGREGLINEAKEFFVELKSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEMEDNNCT 370

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            DS TY  L  AY +A   E    ++  M + G++PN
Sbjct: 371 LDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGVMPN 407


>gi|168049914|ref|XP_001777406.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671255|gb|EDQ57810.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 142/321 (44%), Gaps = 6/321 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ ++ V+ +  Q  L+  +  +M N+G RPD   Y+ LI+      ++      A+ +F
Sbjct: 46  YNVMLKVLRRGQQWELSQQIAEDMINAGIRPDNITYSTLISC----ANRCNYQDAAMAWF 101

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   + C P+ VTY+ ++    +    D+  AL++ + +S   PD  TY  ++  +G+
Sbjct: 102 DRMHDAQ-CVPDAVTYSTMIDVYGKVGKYDEAVALYESVKKSGWKPDKVTYGTMVRLFGR 160

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G I    S+   MK +  +P  + +N++I   G+        +VF+ +  +  KP   T
Sbjct: 161 AGYISAAVSIFDEMKGSGIQPGSVVYNIMISCLGRAGRMGHALKVFQEMKQAGVKPNAVT 220

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            ++++  Y ++    +   +F  M         I Y  +I M      V  A +   E+ 
Sbjct: 221 LSTVMEIYSRSGKVMEGLGIFHHMR-QDLACDIIVYNAVIKMCREAGLVPEAEQYLREMV 279

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G      T   M+  Y  NG+  EA  +F      G  PD  +Y  L + Y  A   E
Sbjct: 280 EYGHQPNDWTYRNMISLYAKNGMAVEAQRMFSQLVEAGYQPDVMSYTSLLQGYGNAKDYE 339

Query: 314 LVQKLLKRMEQNGIVPNKRFF 334
            VQ++L  M      P++R +
Sbjct: 340 KVQEILHEMVSANCAPDERLW 360



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 125/269 (46%), Gaps = 5/269 (1%)

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           K+   AL  F+ ++  +    NI TYN++L+   + +  +    + +++  + + PD  T
Sbjct: 21  KSWKVALSLFKWLQAEQNFNLNIYTYNVMLKVLRRGQQWELSQQIAEDMINAGIRPDNIT 80

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ ++    +        +   RM   QC PD +T++ +ID YGK   +D+   +++S+ 
Sbjct: 81  YSTLISCANRCNYQDAAMAWFDRMHDAQCVPDAVTYSTMIDVYGKVGKYDEAVALYESVK 140

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
            S  KP   T+ +M+  +G+A     A  +F +M      P  + Y  +I+  G    + 
Sbjct: 141 KSGWKPDKVTYGTMVRLFGRAGYISAAVSIFDEMKGSGIQPGSVVYNIMISCLGRAGRMG 200

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM--GVTPDSSTYKL 301
            A ++F E+ + G      TL+ ++E Y  +G   E   +F   H+M   +  D   Y  
Sbjct: 201 HALKVFQEMKQAGVKPNAVTLSTVMEIYSRSGKVMEGLGIF---HHMRQDLACDIIVYNA 257

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + K   +A +    ++ L+ M + G  PN
Sbjct: 258 VIKMCREAGLVPEAEQYLREMVEYGHQPN 286



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 118/263 (44%), Gaps = 3/263 (1%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P+ +TY+ L+    +    D   A F  +H++   PD  TY+ ++D YGK G   E  +
Sbjct: 75  RPDNITYSTLISCANRCNYQDAAMAWFDRMHDAQCVPDAVTYSTMIDVYGKVGKYDEAVA 134

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +   +K +  KPD +T+  ++  +G+         +F  +  S  +P    +N MI   G
Sbjct: 135 LYESVKKSGWKPDKVTYGTMVRLFGRAGYISAAVSIFDEMKGSGIQPGSVVYNIMISCLG 194

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK-LGKDMKV 261
           +A   G A  VFQ+M      P+ +T   ++ +Y     V     IF  + + L  D+ V
Sbjct: 195 RAGRMGHALKVFQEMKQAGVKPNAVTLSTVMEIYSRSGKVMEGLGIFHHMRQDLACDIIV 254

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
              NA+++     GL  EA+         G  P+  TY+ +   Y K  M    Q++  +
Sbjct: 255 --YNAVIKMCREAGLVPEAEQYLREMVEYGHQPNDWTYRNMISLYAKNGMAVEAQRMFSQ 312

Query: 322 MEQNGIVPNKRFFLEALETFSSS 344
           + + G  P+   +   L+ + ++
Sbjct: 313 LVEAGYQPDVMSYTSLLQGYGNA 335



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 110/231 (47%), Gaps = 6/231 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  ++ + G+ G    A+ +F EM+ SG +P   VYN +I+       +A  +  A
Sbjct: 147 DKVTYGTMVRLFGRAGYISAAVSIFDEMKGSGIQPGSVVYNIMISC----LGRAGRMGHA 202

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  FQ+MK     KPN VT + ++   +++  V +   +F  + +  LA DI  YN V+ 
Sbjct: 203 LKVFQEMK-QAGVKPNAVTLSTVMEIYSRSGKVMEGLGIFHHMRQD-LACDIIVYNAVIK 260

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              + G++ E E  L  M     +P+  T+  +I  Y K     + +++F  L+ +  +P
Sbjct: 261 MCREAGLVPEAEQYLREMVEYGHQPNDWTYRNMISLYAKNGMAVEAQRMFSQLVEAGYQP 320

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            + ++ S++  YG A+   K + +  +M +    P    +  I+ +   CD
Sbjct: 321 DVMSYTSLLQGYGNAKDYEKVQEILHEMVSANCAPDERLWCVILNLLDACD 371



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 85/190 (44%)

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           +I T+N+++    + Q ++  +Q+ + ++++  +P   T++++I    +   Q  A   F
Sbjct: 42  NIYTYNVMLKVLRRGQQWELSQQIAEDMINAGIRPDNITYSTLISCANRCNYQDAAMAWF 101

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
            +M   +  P  +TY  +I +YG       A  +++ + K G      T   M+  +   
Sbjct: 102 DRMHDAQCVPDAVTYSTMIDVYGKVGKYDEAVALYESVKKSGWKPDKVTYGTMVRLFGRA 161

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           G  + A  +F+     G+ P S  Y ++     +A       K+ + M+Q G+ PN    
Sbjct: 162 GYISAAVSIFDEMKGSGIQPGSVVYNIMISCLGRAGRMGHALKVFQEMKQAGVKPNAVTL 221

Query: 335 LEALETFSSS 344
              +E +S S
Sbjct: 222 STVMEIYSRS 231


>gi|242032435|ref|XP_002463612.1| hypothetical protein SORBIDRAFT_01g002930 [Sorghum bicolor]
 gi|241917466|gb|EER90610.1| hypothetical protein SORBIDRAFT_01g002930 [Sorghum bicolor]
          Length = 638

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 139/313 (44%), Gaps = 10/313 (3%)

Query: 33  LFSEMRNSG---CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           LF+EMR+      RPD + YN L+ A        ++LA       +        P+ V+Y
Sbjct: 5   LFAEMRHDASPSVRPDLTTYNTLLAAA-----AVRSLADQSEMLLRTMLEAGVSPDTVSY 59

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
             ++ A A A N+ +V  LF E+       D   Y G+M+A+ + G   E  +VL +M++
Sbjct: 60  RYIVDAFASAGNLSRVAELFSEMAVMGNTADASAYLGLMEAHTRVGATAEAVAVLRQMQA 119

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
           + C P   T+ +L+D YG++  FD + ++F+  M +   P   T+N +   YG      +
Sbjct: 120 DGCAPTAATYRVLLDLYGRQGRFDGVRELFRE-MRTAVPPDTATYNVLFRVYGDGGFFKE 178

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
              +F  M      P  +T E ++   G       ARE+ + +++ G          ++E
Sbjct: 179 VVELFHDMLETGVEPDMVTCENVMAACGRGGLHEDAREVLEYMTREGMVPTADAYTGLVE 238

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN-GIV 328
           A     +  EA + F     +G  P   TY  L  AY +  + +  + +  RM  N GI 
Sbjct: 239 ALGHAAMYEEAYVAFNMMTEIGSLPTLETYNTLAFAYARGGLFQEAEAIFSRMSNNAGIQ 298

Query: 329 PNKRFFLEALETF 341
            NK  F   +E +
Sbjct: 299 KNKDSFDALIEAY 311



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 134/322 (41%), Gaps = 7/322 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  Y  ++      G       LFSEM   G   D S Y  L+ AH     +  A A+A
Sbjct: 55  DTVSYRYIVDAFASAGNLSRVAELFSEMAVMGNTADASAYLGLMEAHT----RVGATAEA 110

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +   ++M+  + C P   TY +LL    +    D V  LF+E+  ++  PD  TYN +  
Sbjct: 111 VAVLRQMQA-DGCAPTAATYRVLLDLYGRQGRFDGVRELFREMRTAV-PPDTATYNVLFR 168

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YG  G  KE+  +   M     +PD++T   ++ + G+    +   +V + +      P
Sbjct: 169 VYGDGGFFKEVVELFHDMLETGVEPDMVTCENVMAACGRGGLHEDAREVLEYMTREGMVP 228

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           T   +  ++   G A +  +A   F  MT +   P+  TY  +   Y        A  IF
Sbjct: 229 TADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNTLAFAYARGGLFQEAEAIF 288

Query: 250 DELS-KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             +S   G      + +A++EAYC      +A   +         PD  + + +  AY  
Sbjct: 289 SRMSNNAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCI 348

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
           A + +  ++  + ++ +  +P+
Sbjct: 349 AGVIDESKEQFEELQSSVTLPS 370



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 138/321 (42%), Gaps = 13/321 (4%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD   Y  L+    + G T  A+ +  +M+  GC P  + Y  L+   L+ R       +
Sbjct: 89  ADASAYLGLMEAHTRVGATAEAVAVLRQMQADGCAPTAATYRVLL--DLYGRQGRFDGVR 146

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
            L  F++M+      P+  TYN+L R         +V  LF ++ E+ + PD+ T   VM
Sbjct: 147 EL--FREMR--TAVPPDTATYNVLFRVYGDGGFFKEVVELFHDMLETGVEPDMVTCENVM 202

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            A G+ G+ ++   VL  M      P    +  L+++ G    +++    F  +      
Sbjct: 203 AACGRGGLHEDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSL 262

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMT----AMKYTPSFITYECIITMYGYCDNVSR 244
           PTL T+N++   Y +  L  +AE +F +M+      K   SF   + +I  Y     +  
Sbjct: 263 PTLETYNTLAFAYARGGLFQEAEAIFSRMSNNAGIQKNKDSF---DALIEAYCQGAQLDD 319

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A + + E+ K   +    +L  +L AYC+ G+  E+   FE   +    P    Y ++  
Sbjct: 320 AVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSSVTLPSIIAYCMMLS 379

Query: 305 AYTKANMKELVQKLLKRMEQN 325
            Y + +       +L+ M+ N
Sbjct: 380 LYARNDRWADAYDMLEEMKTN 400



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/244 (19%), Positives = 95/244 (38%), Gaps = 5/244 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  +G       A   F+ M   G  P    YN L  A+     +     +A   F
Sbjct: 233 YTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNTLAFAYA----RGGLFQEAEAIF 288

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M      + N  +++ L+ A  Q   +D     + E+ +S   PD  +  GV++AY  
Sbjct: 289 SRMSNNAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCI 348

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G+I E +     ++S+   P II + +++  Y +   +     + + +  ++   T   
Sbjct: 349 AGVIDESKEQFEELQSSVTLPSIIAYCMMLSLYARNDRWADAYDMLEEMKTNRASSTHQV 408

Query: 194 FNSMIIN-YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
             S+I   Y  +      EY  +  T      S   +  ++ +  +     RA  + D+ 
Sbjct: 409 IASLIKGEYDDSSNWQMVEYALENSTMEGCDYSLRFFNALLDVLWWFGQKGRAARVLDQA 468

Query: 253 SKLG 256
            + G
Sbjct: 469 VQFG 472


>gi|302820365|ref|XP_002991850.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
 gi|300140388|gb|EFJ07112.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
          Length = 425

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 139/317 (43%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  +I  + K G   LAM L  +M  +G  PD  + N +    L    KA  + +A   F
Sbjct: 52  YKCVIQSLVKAGNVVLAMELLDKMIKTGLEPDTLLCNVV----LDGLGKANMMDEACKLF 107

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             MK M  C  +  TY IL+R+  + +  ++   LF E+ E    P    Y  V+D Y K
Sbjct: 108 ASMKSMG-CPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCK 166

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G I+    VL +M      PD  T N LI +  +    +   ++F+ +  S       +
Sbjct: 167 AGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVS 226

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           FN+M+   GKA   G A     +M A    P+ IT+  +I   G     S A ++  E+ 
Sbjct: 227 FNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMR 286

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V T   M+EA+   G   +A  +F +    G + +  TY LL  A  KA   +
Sbjct: 287 SAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQ 346

Query: 314 LVQKLLKRMEQNGIVPN 330
             + +   M++ GI+P+
Sbjct: 347 DARDIYFDMKKKGILPD 363



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 138/312 (44%), Gaps = 5/312 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           + + ++++ CR    V NA+I A+     ++  + K +  FQ++      KPN  TY  +
Sbjct: 1   MLAAIQDTPCRYHVLVSNAVIAAY----GRSSRIHKVMDEFQELDK-HGSKPNAYTYKCV 55

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +++  +A NV     L  ++ ++ L PD    N V+D  GK  M+ E   + + MKS  C
Sbjct: 56  IQSLVKAGNVVLAMELLDKMIKTGLEPDTLLCNVVLDGLGKANMMDEACKLFASMKSMGC 115

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
             D  T+ +LI S G+ +  ++   +F  +      P+ P + ++I  Y KA     A  
Sbjct: 116 PADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMV 175

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           V +KM      P   T   +IT          A EIF+ + K G  +   + NAML+   
Sbjct: 176 VLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCG 235

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             G    A    +     G+ P+S T+  L     +A       K+L+ M   G+ P+  
Sbjct: 236 KAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVF 295

Query: 333 FFLEALETFSSS 344
            +   +E F+ +
Sbjct: 296 TYTCMIEAFAKA 307



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 124/303 (40%), Gaps = 40/303 (13%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD   Y+ LI  +G+  +   A  LF EM   GC P    Y  +I  +            
Sbjct: 117 ADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIY------------ 164

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
                        CK               A  ++    + K++ +  LAPD YT N ++
Sbjct: 165 -------------CK---------------AGRIESAMVVLKKMLDKNLAPDDYTLNSLI 196

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            A  + G  +    +  RMK +    + ++FN ++D  GK        Q    +     K
Sbjct: 197 TAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIK 256

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   TFN++I   G+A+   +A  V Q+M +   TP   TY C+I  +    N+ +A E+
Sbjct: 257 PNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEM 316

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F ++ K G    V T N +++A    G   +A  ++ +    G+ PD+ T  +L +   K
Sbjct: 317 FGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDIYFDMKKKGILPDAITATVLQQLAGK 376

Query: 309 ANM 311
             +
Sbjct: 377 CKL 379


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 138/318 (43%), Gaps = 4/318 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  +  +G+   A+ +  +MR +GC P+   YN L+ A      +A  L  A    
Sbjct: 155 YNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFC----RAGELDGAERVV 210

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             M+     KPN+VT+N ++    +A  ++    +F E+    LAPD+ +YN ++  Y K
Sbjct: 211 SLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCK 270

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + E  +V S M      PD++TF  LI +  K    ++   +   +     +    T
Sbjct: 271 VGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVT 330

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           F ++I  + K      A    ++M      PS + Y  +I  Y     +  ARE+  E+ 
Sbjct: 331 FTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREME 390

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
                  V T + ++  YC  G    A  L +     GV PD+ TY  L +   +     
Sbjct: 391 AKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLN 450

Query: 314 LVQKLLKRMEQNGIVPNK 331
              +L + M Q G+ P++
Sbjct: 451 DACELFENMLQLGVQPDE 468



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 152/321 (47%), Gaps = 13/321 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ ++  + K G+   A  +F EM   G  PD   YN L++ +     K   L ++L  F
Sbjct: 226 FNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYC----KVGCLHESLAVF 281

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  +G+    P++VT+  L+ A  +A N++Q  AL  ++ E  L  +  T+  ++D +
Sbjct: 282 SEMTQRGL---VPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGF 338

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G + +    +  M+    +P ++ +N LI+ Y K    D   ++ + +   + KP +
Sbjct: 339 CKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDV 398

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIF 249
            T++++I  Y K      A  + QKM      P  ITY  +I   G C+   ++ A E+F
Sbjct: 399 VTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIR--GLCEEKRLNDACELF 456

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           + + +LG      T   +++ +C  G   +A  L +     GV PD  TY +L    +K+
Sbjct: 457 ENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKS 516

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +   +LL ++     VP+
Sbjct: 517 ARTKEAHRLLFKLYHEDPVPD 537



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 132/304 (43%), Gaps = 52/304 (17%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P++  YN +L A + A ++         +    +AP++YTYN ++ A    G ++E   V
Sbjct: 116 PSVPAYNAVLLALSDA-SLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGV 174

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK--EKPTLPTFNSMIINY 201
           +  M+   C P+ +T+N L+ ++ +    D  E+V  SLM  +   KP L TFNSM+   
Sbjct: 175 VGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV-SLMREEGNAKPNLVTFNSMVNGL 233

Query: 202 GKA-RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--------------------- 239
            KA R++G A  VF +M      P  ++Y  +++  GYC                     
Sbjct: 234 CKAGRMEG-ARKVFDEMVREGLAPDVVSYNTLLS--GYCKVGCLHESLAVFSEMTQRGLV 290

Query: 240 ----------------DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
                            N+ +A  +  ++ + G  M   T  A+++ +C  G   +A L 
Sbjct: 291 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLA 350

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
            E     G+ P    Y  L   Y K    +L ++L++ ME   + P+       + T+S+
Sbjct: 351 VEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPD-------VVTYST 403

Query: 344 SLAG 347
            ++G
Sbjct: 404 IISG 407



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 144/344 (41%), Gaps = 24/344 (6%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR  + D   ++ LI    K G    A+ L ++MR  G R +   + ALI        K 
Sbjct: 286 QRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFC----KK 341

Query: 64  KALAKALGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             L  AL   ++M+   +C  +P++V YN L+    +   +D    L +E+    + PD+
Sbjct: 342 GFLDDALLAVEEMR---KCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDV 398

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TY+ ++  Y K G +     +  +M      PD IT++ LI    + +  +   ++F++
Sbjct: 399 VTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFEN 458

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++    +P   T+ ++I  + K     KA  +  +M      P  +TY  +I        
Sbjct: 459 MLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSAR 518

Query: 242 VSRAREI---------------FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
              A  +               +D L       +  ++ A+L+ +CM GL  EAD ++++
Sbjct: 519 TKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQS 578

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +     D S Y +L   + +           K+M ++G  PN
Sbjct: 579 MLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPN 622



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 148/323 (45%), Gaps = 14/323 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L++   K G    ++ +FSEM   G  PD   + +LI    H   KA  L +A
Sbjct: 257 DVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLI----HATCKAGNLEQA 312

Query: 70  LGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           +    +M+  ER  + N VT+  L+    +   +D      +E+ +  + P +  YN ++
Sbjct: 313 VALVAQMR--ERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALI 370

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + Y K G +     ++  M++ + KPD++T++ +I  Y K    D   Q+ + ++     
Sbjct: 371 NGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVL 430

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAR 246
           P   T++S+I    + +    A  +F+ M  +   P   TY  +I   G+C   NV +A 
Sbjct: 431 PDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLID--GHCKEGNVEKAL 488

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKLLYKA 305
            + DE+ + G    V T + ++     +    EA  LLF+  H   V PD+  Y  L   
Sbjct: 489 SLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPV-PDNIKYDALMLC 547

Query: 306 YTKANMKELVQKLLKRMEQNGIV 328
            +KA  K +V  LLK     G++
Sbjct: 548 CSKAEFKSVVA-LLKGFCMKGLM 569


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 158/334 (47%), Gaps = 12/334 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSG-CRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           Y  +I+   K G+   A+ +F EM   G  +P+  +YNALI  +    D+ K L  AL Y
Sbjct: 553 YGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYC---DQGK-LDTALLY 608

Query: 73  FQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             +M  +ER     + TYN+L+ A        +   L +E+    LAPD++TYN +++ +
Sbjct: 609 RDRM--VERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGH 666

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G +K+   +   M     +  ++T+  LI +  K+    + +++F   +    +P L
Sbjct: 667 CKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDL 726

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIF 249
             +N++I ++  +    +A  +  +M   +  P  +TY  +  M G C    V  AR++ 
Sbjct: 727 VLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTL--MRGLCLLGRVDEARKLI 784

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE+++ G    + T N ++  Y M G   +A  +     N G  P   TY  L +   K 
Sbjct: 785 DEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKN 844

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
              +  + ++K M +NGI P+   ++  +E  ++
Sbjct: 845 GQGDDAENMVKEMVENGITPDDSTYISLIEGLTT 878



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 5/224 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI    K+G  + A+ +F  M   G R     Y ALI A L  + + +   K 
Sbjct: 655 DVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYA-LSKKGQVQETDKL 713

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                + +G+   +P++V YN L+ + + + N+D+   +  E+ +  +APD  TYN +M 
Sbjct: 714 FDEAVR-RGI---RPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMR 769

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
                G + E   ++  M     +PD++T+N LI  Y  +       ++   +M+    P
Sbjct: 770 GLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 829

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           TL T+N++I    K      AE + ++M     TP   TY  +I
Sbjct: 830 TLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLI 873



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 118/296 (39%), Gaps = 13/296 (4%)

Query: 54  TAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH 113
           TA LH    A   A A   F  M  + R      T+NI+LR    A    +   L +++ 
Sbjct: 452 TASLHPLLSALPSAPAFALFADMFRL-RLPLCTTTFNIMLRHLCSAGKPARALELLRQMP 510

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLLIDSYGKRQAF 172
                P+  TYN V+  +   G ++    ++  M+      P+  T+  +I  + K    
Sbjct: 511 R----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRV 566

Query: 173 DKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKAEYVF---QKMTAMKYTPSFIT 228
           D+  +VF  ++   E KP    +N++I  Y     QGK +       +M       +  T
Sbjct: 567 DEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD---QGKLDTALLYRDRMVERGVAMTVAT 623

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
           Y  ++         + A E+ +E+   G    V T N ++  +C  G   +A  +FEN  
Sbjct: 624 YNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS 683

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             GV     TY  L  A +K    +   KL     + GI P+   +   + + S+S
Sbjct: 684 RRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 739



 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 10/132 (7%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+K+R    D   Y+ L+  +   G+   A  L  EM   G +PD   YN LI+ +    
Sbjct: 752 MEKKR-IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKG 810

Query: 61  DKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
           D    +  AL    +M  KG     P ++TYN L++   +    D    + KE+ E+ + 
Sbjct: 811 D----VKDALRIRNEMMNKGF---NPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGIT 863

Query: 119 PDIYTYNGVMDA 130
           PD  TY  +++ 
Sbjct: 864 PDDSTYISLIEG 875


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 151/329 (45%), Gaps = 9/329 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ +I  + K G+   A  +F+EM   G  PD   Y ALI  +     KA  + 
Sbjct: 379 VPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYC----KAGEMK 434

Query: 68  KALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           +A     +M  KG+    PN+VTY  L     +   +D  N L  E+    L P++YTYN
Sbjct: 435 EAFSVHNQMVQKGL---TPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYN 491

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++   K G I++   ++  M      PD IT+  L+D+Y K     K  ++ + +++ 
Sbjct: 492 TIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNK 551

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
           + +PTL TFN ++  +  + +    E + + M      P+  T+  ++  Y   +N+   
Sbjct: 552 RLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRAT 611

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            EI+  +   G     +T N +++ +C      EA  L +     G +  ++TY  L + 
Sbjct: 612 TEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRG 671

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           + K       +KL + M ++G+V  K  +
Sbjct: 672 FYKRKKFVEARKLFEEMRKHGLVAEKDIY 700



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 131/312 (41%), Gaps = 9/312 (2%)

Query: 25  GQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK- 83
           G+    + L  E++  G +PD  +YN +I       +  +A        Q ++GM +   
Sbjct: 291 GELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAE-------QLLRGMRKWGV 343

Query: 84  -PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
            P+ V Y  ++    +  NV     LF E+    + PDI TY  V+    K+G + E   
Sbjct: 344 FPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEARE 403

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           + + M     +PD +T+  LID Y K     +   V   ++     P + T+ ++     
Sbjct: 404 MFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLC 463

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           K      A  +  +M+     P+  TY  I+       N+ +  ++ +E+   G      
Sbjct: 464 KNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTI 523

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T   +++AYC  G   +A  L     N  + P   T+ +L   +  + M E  ++L++ M
Sbjct: 524 TYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWM 583

Query: 323 EQNGIVPNKRFF 334
            + GI+PN   F
Sbjct: 584 LEKGIMPNATTF 595



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 134/311 (43%), Gaps = 15/311 (4%)

Query: 25  GQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP 84
           G+ R A  L  +M + G  PD   Y  +++ +     +   L K L    ++KG +  KP
Sbjct: 256 GKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYC----RIGELDKVLKLVDELKG-KGLKP 310

Query: 85  NIVTYN-ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           +   YN I+L  C     V +   L + + +  + PD   Y  V+  + K G +     +
Sbjct: 311 DEYIYNNIILLLCKNGEVV-EAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKL 369

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
              M+  +  PDI+T+  +I    K     +  ++F  ++    +P   T+ ++I  Y K
Sbjct: 370 FDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCK 429

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKV 261
           A    +A  V  +M     TP+ +TY  +    G C N  +  A E+  E+S+ G    V
Sbjct: 430 AGEMKEAFSVHNQMVQKGLTPNVVTYTALAD--GLCKNGEIDVANELLHEMSRKGLQPNV 487

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK----ANMKELVQK 317
            T N ++   C  G   +   L E     G  PD+ TY  L  AY K    A   EL++ 
Sbjct: 488 YTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRI 547

Query: 318 LLKRMEQNGIV 328
           +L +  Q  +V
Sbjct: 548 MLNKRLQPTLV 558



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 118/264 (44%), Gaps = 5/264 (1%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A+  F++   +  C  N V+ NI+L    Q   V + + L  ++ +    PD+ +Y  V+
Sbjct: 226 AVKVFEEFPELGVCW-NTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVV 284

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
             Y + G + ++  ++  +K    KPD   +N +I    K     + EQ+ + +      
Sbjct: 285 SGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVF 344

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAR 246
           P    + ++I  + K      A  +F +M   K  P  +TY  +I  +G C +  +  AR
Sbjct: 345 PDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVI--HGICKSGKMVEAR 402

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+F+E+   G +    T  A+++ YC  G   EA  +       G+TP+  TY  L    
Sbjct: 403 EMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGL 462

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K    ++  +LL  M + G+ PN
Sbjct: 463 CKNGEIDVANELLHEMSRKGLQPN 486


>gi|326520353|dbj|BAK07435.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 652

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 150/306 (49%), Gaps = 16/306 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  ++S LI +  + G    A+ LFS +R +G RPD   YNA I A+     K+  L  A
Sbjct: 188 DLVLFSNLIHLALRAGDAPKALALFSRLRAAGIRPDLKAYNAAIAAYC----KSDLLRDA 243

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHE-SILAPDIYTYNGV 127
                     +   P+  +Y  +L A A+  R++  V+ LF  +   + + PD+  +N V
Sbjct: 244 KRLLLHDVPADGVAPDAESYAPVLAALARRGRHLAAVS-LFSHMRAVARVKPDLSVFNIV 302

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++AYG+  + ++ + +   M+     P ++T+N ++  YG    F +   +F  LM+S  
Sbjct: 303 LNAYGQLDLARDADRLFWSMRRAGVPPSVVTYNTMLRVYGDAGLFGEAVHLF-GLMYSTA 361

Query: 188 -------KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
                  +P + T+N+MI  +GKA    KA  + Q+M A    P+ +TY  +++++    
Sbjct: 362 SDGGTVVRPNVVTYNTMIAIHGKALEDDKAGSLVQQMQASGIQPNAVTYSTVLSIWVKAG 421

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD-LLFENSHNMGVTPDSSTY 299
            + RA ++FD+L + G +M       M+ AY   GL +++  LL E  H     P  +  
Sbjct: 422 KLDRAAKLFDKLRESGTEMDPVLYQTMVVAYERAGLVSQSKRLLRELRHPDQAIPKETAM 481

Query: 300 KLLYKA 305
           K+L  A
Sbjct: 482 KILASA 487



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 147/330 (44%), Gaps = 13/330 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R   AD   YS L+A + + G    A+     M      PD  +++ LI   L   D 
Sbjct: 146 RARGVAADGFSYSTLLAALTRAGHLDHALTFLPLMEADAVAPDLVLFSNLIHLALRAGDA 205

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDI 121
            KALA     F +++     +P++  YN  + A C      D    L  ++    +APD 
Sbjct: 206 PKALA----LFSRLRAAG-IRPDLKAYNAAIAAYCKSDLLRDAKRLLLHDVPADGVAPDA 260

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            +Y  V+ A  + G      S+ S M++  + KPD+  FN+++++YG+       +++F 
Sbjct: 261 ESYAPVLAALARRGRHLAAVSLFSHMRAVARVKPDLSVFNIVLNAYGQLDLARDADRLFW 320

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK------YTPSFITYECIIT 234
           S+  +   P++ T+N+M+  YG A L G+A ++F  M +          P+ +TY  +I 
Sbjct: 321 SMRRAGVPPSVVTYNTMLRVYGDAGLFGEAVHLFGLMYSTASDGGTVVRPNVVTYNTMIA 380

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
           ++G      +A  +  ++   G      T + +L  +   G    A  LF+     G   
Sbjct: 381 IHGKALEDDKAGSLVQQMQASGIQPNAVTYSTVLSIWVKAGKLDRAAKLFDKLRESGTEM 440

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           D   Y+ +  AY +A +    ++LL+ +  
Sbjct: 441 DPVLYQTMVVAYERAGLVSQSKRLLRELRH 470



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 121/288 (42%), Gaps = 43/288 (14%)

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           +V YN+LLRA ++A  +   + L  E+    +A D ++Y+ ++ A  + G +    + L 
Sbjct: 119 LVPYNLLLRAASRAGQLRLASGLLLEMRARGVAADGFSYSTLLAALTRAGHLDHALTFLP 178

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
            M+++   PD++ F+ LI    +     K   +F  L  +  +P L  +N+ I  Y K+ 
Sbjct: 179 LMEADAVAPDLVLFSNLIHLALRAGDAPKALALFSRLRAAGIRPDLKAYNAAIAAYCKSD 238

Query: 206 L---------------------------------QGK---AEYVFQKMTAM-KYTPSFIT 228
           L                                 +G+   A  +F  M A+ +  P    
Sbjct: 239 LLRDAKRLLLHDVPADGVAPDAESYAPVLAALARRGRHLAAVSLFSHMRAVARVKPDLSV 298

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA----DLLF 284
           +  ++  YG  D    A  +F  + + G    V T N ML  Y   GL  EA     L++
Sbjct: 299 FNIVLNAYGQLDLARDADRLFWSMRRAGVPPSVVTYNTMLRVYGDAGLFGEAVHLFGLMY 358

Query: 285 ENSHNMG--VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             + + G  V P+  TY  +   + KA   +    L+++M+ +GI PN
Sbjct: 359 STASDGGTVVRPNVVTYNTMIAIHGKALEDDKAGSLVQQMQASGIQPN 406



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/267 (19%), Positives = 117/267 (43%), Gaps = 12/267 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +++ ++   G+    R A  LF  MR +G  P    YN ++  +      A    +A
Sbjct: 295 DLSVFNIVLNAYGQLDLARDADRLFWSMRRAGVPPSVVTYNTMLRVY----GDAGLFGEA 350

Query: 70  LGYFQKM-----KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           +  F  M      G    +PN+VTYN ++    +A   D+  +L +++  S + P+  TY
Sbjct: 351 VHLFGLMYSTASDGGTVVRPNVVTYNTMIAIHGKALEDDKAGSLVQQMQASGIQPNAVTY 410

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           + V+  + K G +     +  +++ +  + D + +  ++ +Y +     + +++ + L H
Sbjct: 411 STVLSIWVKAGKLDRAAKLFDKLRESGTEMDPVLYQTMVVAYERAGLVSQSKRLLRELRH 470

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
             +   +P   +M I     R++ +A ++F++            +  ++ ++        
Sbjct: 471 PDQ--AIPKETAMKILASAGRVE-EAAWLFRRAVHTGEVKDPSVHRAMMALFAKNRRHRS 527

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAY 271
             E+FDE+ KLG      T+   + AY
Sbjct: 528 VVEVFDEMRKLGHLPDSETIAVTMNAY 554



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 81/169 (47%), Gaps = 8/169 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS ++++  K G+   A  LF ++R SG   DP +Y  ++ A+    ++A  ++++    
Sbjct: 410 YSTVLSIWVKAGKLDRAAKLFDKLRESGTEMDPVLYQTMVVAY----ERAGLVSQSKRLL 465

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++++  ++  P      IL    A A  V++   LF+    +    D   +  +M  + K
Sbjct: 466 RELRHPDQAIPKETAMKIL----ASAGRVEEAAWLFRRAVHTGEVKDPSVHRAMMALFAK 521

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           N   + +  V   M+     PD  T  + +++YGK + FDK   ++++L
Sbjct: 522 NRRHRSVVEVFDEMRKLGHLPDSETIAVTMNAYGKLKEFDKAAGLYRAL 570


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 148/350 (42%), Gaps = 32/350 (9%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA-- 67
           D   Y+ +I  + K+G    A   + EM +    PD   YN++I A    +   +A+   
Sbjct: 10  DVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEVL 69

Query: 68  -------------------------KALGYFQKM--KGMERCKPNIVTYNILLRACAQAR 100
                                    KA+G F+KM   G+E   P++VTYN L+    +  
Sbjct: 70  TVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIE---PDVVTYNSLMDYLCKNG 126

Query: 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
              +   +F  + +  L PDI TY  ++  Y   G + EM  +L+ M  N  + D   FN
Sbjct: 127 KCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFN 186

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
           +LI +Y K++  D++  VF  +      P    + ++I    K      A   F++M   
Sbjct: 187 ILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDK 246

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
             TP+ + Y  +I      D   +A E+  E+   G +  +   N +L++ C  G   E+
Sbjct: 247 GLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIES 306

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             LF+   ++GV PD  TY  L   Y  A   +   KLL  M   G+ P+
Sbjct: 307 KKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPD 356



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 121/261 (46%), Gaps = 9/261 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +++ LI    K+ +    + +FS+MR  G  P+   Y  +I        K   L  A
Sbjct: 181 DHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLC----KLGRLDDA 236

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +  F++M  KG+    PN+V Y  L+ A       ++   L  E+ +  + P+I  +N +
Sbjct: 237 MLNFEQMIDKGL---TPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTI 293

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D+  K G + E + +   +      PD+IT++ LID Y      D   ++   ++    
Sbjct: 294 LDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGL 353

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           KP   T++++I  Y K      A  +F++M +    P  ITY  I+         + A+E
Sbjct: 354 KPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKE 413

Query: 248 IFDELSKLGKDMKVSTLNAML 268
           ++  +++ G  +++ST N +L
Sbjct: 414 LYARITESGTQLELSTYNIIL 434



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 134/319 (42%), Gaps = 9/319 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+  + K G+   A  +F  M   G +PD + Y  L    LH      AL + 
Sbjct: 111 DVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTL----LHGYASKGALVEM 166

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
                 M   GM+    +   +NIL+ A  +   VD+V  +F ++ +  L P+   Y  V
Sbjct: 167 HDLLALMVQNGMQL---DHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTV 223

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D   K G + +      +M      P+++ +  LI +      ++K E++   ++    
Sbjct: 224 IDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGI 283

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P +  FN+++ +  K     +++ +F  +  +   P  ITY  +I  Y     +  A +
Sbjct: 284 NPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMK 343

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +   +  +G      T + ++  YC      +A  LF+   + GV PD  TY ++     
Sbjct: 344 LLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLF 403

Query: 308 KANMKELVQKLLKRMEQNG 326
           +       ++L  R+ ++G
Sbjct: 404 RTRRTAAAKELYARITESG 422



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 120/292 (41%), Gaps = 31/292 (10%)

Query: 81  RCKPNIVTYNILLRACAQARNVDQVNALFKEL-----------HESILA----------- 118
           RC P++V+YN ++    +  +VD+    + E+           + SI+A           
Sbjct: 6   RCPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRA 65

Query: 119 ---------PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR 169
                    P+ +TYN +M  Y  +G  ++   +  +M S+  +PD++T+N L+D   K 
Sbjct: 66  MEVLTVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKN 125

Query: 170 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
               +  ++F S++    KP + T+ +++  Y       +   +   M           +
Sbjct: 126 GKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVF 185

Query: 230 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289
             +I  Y   + V     +F ++ + G          +++  C  G   +A L FE   +
Sbjct: 186 NILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMID 245

Query: 290 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            G+TP+   Y  L  A    +  E  ++L+  +   GI PN  FF   L++ 
Sbjct: 246 KGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSL 297



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 127/307 (41%), Gaps = 5/307 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R    D   Y  L+     KG       L + M  +G + D  V+N LI A+     K 
Sbjct: 140 KRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAY----TKQ 195

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           + + + +  F KM+  +   PN V Y  ++    +   +D     F+++ +  L P++  
Sbjct: 196 EKVDEVVLVFSKMR-QQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVV 254

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++ A       ++ E ++  +      P+I+ FN ++DS  K     + +++F  L 
Sbjct: 255 YTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLG 314

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
           H    P + T++++I  Y  A     A  +   M ++   P  +TY  +I  Y   + + 
Sbjct: 315 HIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRME 374

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  +F E+   G +  + T N +L           A  L+      G   + STY ++ 
Sbjct: 375 DALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESGTQLELSTYNIIL 434

Query: 304 KAYTKAN 310
             + K N
Sbjct: 435 MDFAKTN 441



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 79/212 (37%), Gaps = 46/212 (21%)

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
           +C PD++++N +ID   K    DK    +  ++  +  P   T+NS+I    KA+   +A
Sbjct: 6   RCPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRA 65

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
             V   M      P+  TY                                   N+++  
Sbjct: 66  MEVLTVMVM----PNCFTY-----------------------------------NSIMHG 86

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           YC +G   +A  +F    + G+ PD  TY  L     K       +K+   M + G+ P+
Sbjct: 87  YCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPD 146

Query: 331 KRFFLEALETFSSSLAGSQSGSAKTDLTRSLS 362
                  + T+ + L G  S  A  ++   L+
Sbjct: 147 -------ITTYGTLLHGYASKGALVEMHDLLA 171


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 158/334 (47%), Gaps = 12/334 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSG-CRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           Y  +I+   K G+   A+ +F EM   G  +P+  +YNALI  +    D+ K L  AL Y
Sbjct: 558 YGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYC---DQGK-LDTALLY 613

Query: 73  FQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             +M  +ER     + TYN+L+ A        +   L +E+    LAPD++TYN +++ +
Sbjct: 614 RDRM--VERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGH 671

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G +K+   +   M     +  ++T+  LI +  K+    + +++F   +    +P L
Sbjct: 672 CKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDL 731

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIF 249
             +N++I ++  +    +A  +  +M   +  P  +TY  +  M G C    V  AR++ 
Sbjct: 732 VLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTL--MRGLCLLGRVDEARKLI 789

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE+++ G    + T N ++  Y M G   +A  +     N G  P   TY  L +   K 
Sbjct: 790 DEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKN 849

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
              +  + ++K M +NGI P+   ++  +E  ++
Sbjct: 850 GQGDDAENMVKEMVENGITPDDSTYISLIEGLTT 883



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 5/224 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI    K+G  + A+ +F  M   G R     Y ALI A L  + + +   K 
Sbjct: 660 DVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYA-LSKKGQVQETDKL 718

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                + +G+   +P++V YN L+ + + + N+D+   +  E+ +  +APD  TYN +M 
Sbjct: 719 FDEAVR-RGI---RPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMR 774

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
                G + E   ++  M     +PD++T+N LI  Y  +       ++   +M+    P
Sbjct: 775 GLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 834

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           TL T+N++I    K      AE + ++M     TP   TY  +I
Sbjct: 835 TLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLI 878



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 118/296 (39%), Gaps = 13/296 (4%)

Query: 54  TAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH 113
           TA LH    A   A A   F  M  + R      T+NI+LR    A    +   L +++ 
Sbjct: 457 TASLHPLLSALPSAPAFALFADMFRL-RLPLCTTTFNIMLRHLCSAGKPARALELLRQMP 515

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLLIDSYGKRQAF 172
                P+  TYN V+  +   G ++    ++  M+      P+  T+  +I  + K    
Sbjct: 516 R----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRV 571

Query: 173 DKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKAEYVF---QKMTAMKYTPSFIT 228
           D+  +VF  ++   E KP    +N++I  Y     QGK +       +M       +  T
Sbjct: 572 DEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD---QGKLDTALLYRDRMVERGVAMTVAT 628

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
           Y  ++         + A E+ +E+   G    V T N ++  +C  G   +A  +FEN  
Sbjct: 629 YNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS 688

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             GV     TY  L  A +K    +   KL     + GI P+   +   + + S+S
Sbjct: 689 RRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 744



 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 10/132 (7%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+K+R    D   Y+ L+  +   G+   A  L  EM   G +PD   YN LI+ +    
Sbjct: 757 MEKKR-IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKG 815

Query: 61  DKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
           D    +  AL    +M  KG     P ++TYN L++   +    D    + KE+ E+ + 
Sbjct: 816 D----VKDALRIRNEMMNKGF---NPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGIT 868

Query: 119 PDIYTYNGVMDA 130
           PD  TY  +++ 
Sbjct: 869 PDDSTYISLIEG 880


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 157/361 (43%), Gaps = 41/361 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+R  + +  +Y+ LI  + K+ + R A  LF EM      P+   +N LI  +     K
Sbjct: 93  KRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYC----K 148

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A  +  A+G  ++MK  E+ +P+I+T+N LL    +AR +++   +  E+  +   PD +
Sbjct: 149 AGEVDVAIGLRERMK-KEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGF 207

Query: 123 TYNGVMD------------------AYGK-------------NGMIKE-----MESVLSR 146
           TY+ + D                  A GK             NG+ KE      E VL  
Sbjct: 208 TYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKS 267

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           +  +   P  + +N +++ Y +    D+     + +     +P    FNS+I  + + ++
Sbjct: 268 LVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQM 327

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
             KAE   +KM      PS  TY  +I  YG     SR  +I +E+ + G+   V +  +
Sbjct: 328 IDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGS 387

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           ++   C +G   EA+++  +    GV P+++ Y +L              +    M +NG
Sbjct: 388 LINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNG 447

Query: 327 I 327
           I
Sbjct: 448 I 448



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 155/357 (43%), Gaps = 41/357 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA----KA 69
           ++ L++ + K  +   A  + +E++ +G  PD   Y+ +    L + D A A      +A
Sbjct: 174 FNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREA 233

Query: 70  LGYFQK---------MKGMERCK--------------------PNIVTYNILLRACAQAR 100
           +G   K         + G+  CK                    P  V YN ++    Q  
Sbjct: 234 IGKGVKIDNYTCSILLNGL--CKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIG 291

Query: 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
           ++D+     +++    L P+   +N V+D + +  MI + E  + +M      P + T+N
Sbjct: 292 DMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYN 351

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
           +LID YG+   F +  Q+ + +  + EKP + ++ S+I    K     +AE V + M   
Sbjct: 352 ILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGR 411

Query: 221 KYTPSFITYECIITMYGYCDNVSRARE---IFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
              P+   Y  +I   G C  V + RE    FDE+SK G    + T N++++  C  G  
Sbjct: 412 GVLPNANIYNMLID--GSC-TVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKL 468

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            EA+ +F    + G  PD  TY  L   Y+ A   +   +L + M++ G+ P    F
Sbjct: 469 KEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTF 525



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 138/317 (43%), Gaps = 6/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI   G+         +  EM  +G +P+   Y +LI        K   + +A    
Sbjct: 350 YNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLC----KDGKILEAEMVL 405

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M G     PN   YN+L+        + +    F E+ ++ +   I TYN ++    K
Sbjct: 406 RDMVG-RGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCK 464

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +KE E +   + S    PD+IT+N LI  Y       K  ++++++     KPT+ T
Sbjct: 465 MGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINT 524

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           F+ +I    K  ++ K E +F +M  M  +P  + Y  +I  Y    +V +A  +  E+ 
Sbjct: 525 FHPLISGCSKEGIKLK-ETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMV 583

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
            +G      T N+++  +   G  +E   L ++    G+ P++ TY LL + +       
Sbjct: 584 DMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFN 643

Query: 314 LVQKLLKRMEQNGIVPN 330
                 + M +NG +PN
Sbjct: 644 GAYVWYREMLENGFLPN 660



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 134/312 (42%), Gaps = 10/312 (3%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           L+  MR  G  P       ++ + + +    K     L  F++M G+   +P+ + Y   
Sbjct: 18  LYDFMRQEGRLPSFGYVRMIVESLVES----KKFDNVLDLFKEMVGLGF-RPDKLVYGRA 72

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           + A  +  ++     LF+ +    + P+++ YN ++    K   I++ E +   M     
Sbjct: 73  MLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNL 132

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            P+ +TFN LID Y K    D    + + +   K +P++ TFNS++    KAR   +A  
Sbjct: 133 VPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARC 192

Query: 213 VFQKMTAMKYTPSFITYECIIT-MYGYCDNVSRAREIFDELSKLGKDMKVS--TLNAMLE 269
           +  ++    + P   TY  I   +    D    A +++ E   +GK +K+   T + +L 
Sbjct: 193 MLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYRE--AIGKGVKIDNYTCSILLN 250

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             C  G   +A+ + ++    G+ P    Y  +   Y +    +     +++ME  G+ P
Sbjct: 251 GLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRP 310

Query: 330 NKRFFLEALETF 341
           N   F   ++ F
Sbjct: 311 NCIAFNSVIDKF 322



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 124/299 (41%), Gaps = 29/299 (9%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R  + +  IY+ LI      G+ R A+  F EM  +G       YN+LI        K  
Sbjct: 411 RGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLC----KMG 466

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            L +A   F  +     C P+++TYN L+   + A N  +   L++ + +  L P I T+
Sbjct: 467 KLKEAEEMFFLITSTGHC-PDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTF 525

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           + ++    K G IK  E++ + M      PD + +N +I  Y +     K   + K ++ 
Sbjct: 526 HPLISGCSKEG-IKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVD 584

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD---- 240
              +P   T+NS+I+ + K     + + +   M A    P   TY  +I   G+CD    
Sbjct: 585 MGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQ--GHCDLKDF 642

Query: 241 -----------------NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
                            NV    E+   L K G+  +  ++ + + A  M+ L T  DL
Sbjct: 643 NGAYVWYREMLENGFLPNVCICNELSTGLRKDGRLQEAQSICSEMIANGMDNLDTNEDL 701


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 148/336 (44%), Gaps = 25/336 (7%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L+  + ++G+   A+ L   M   G +P+   Y  ++       D   AL       
Sbjct: 182 FTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSAL----NLL 237

Query: 74  QKMKGMERCKPNIVTYNILLRAC------AQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +KM+ +   KPN+V + +  R C      +  R  +    L + L    ++PD+ TYN +
Sbjct: 238 RKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNAL 297

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++A+ K G   E E +   M      P  IT++ +ID + K+   D  E +F  +     
Sbjct: 298 INAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGC 357

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRA 245
            P + TFN++I  Y +A+       +  +MT      + ITY  +I  +G+C   +++ A
Sbjct: 358 SPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLI--HGFCQVGDLNAA 415

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF----------ENSHNM-GVTP 294
           +++  E+   G    V T N +L+  C NG   +A  +F          + SH   GV P
Sbjct: 416 QDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEP 475

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           D  TY +L             ++L + M   GIVP+
Sbjct: 476 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 511



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 147/337 (43%), Gaps = 26/337 (7%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI    K+G+   A  L+ EM   G  P    Y+++I      +++  A A+ 
Sbjct: 290 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCK-QNRLDA-AEH 347

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           + Y    KG   C P+I+T+N L+    +A+ VD    L  E+ E+ L  +  TY  ++ 
Sbjct: 348 MFYLMATKG---CSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIH 404

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK--- 186
            + + G +   + +L  M S+   P+++T N L+D            ++FK++  SK   
Sbjct: 405 GFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDI 464

Query: 187 --------EKPTLPTFNSMI---INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
                    +P + T+N +I   IN GK     +AE ++++M      P  ITY  +I  
Sbjct: 465 DASHPFNGVEPDVQTYNILISGLINEGKFL---EAEELYEEMPHRGIVPDTITYNSVI-- 519

Query: 236 YGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
           +G C    +  A ++FD +        V T   ++  YC  G   +   LF      G+ 
Sbjct: 520 HGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIV 579

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            ++ TY  L   + K         + + M  +G+ P+
Sbjct: 580 ANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPD 616



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 141/328 (42%), Gaps = 21/328 (6%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R  I  T  YS +I    K+ +   A  +F  M   GC PD   +N LI  +     +AK
Sbjct: 320 RGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYC----RAK 375

Query: 65  ALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +   +    +M   G+     N +TY  L+    Q  +++    L +E+  S + P++ 
Sbjct: 376 RVDDGIKLLHEMTEAGL---VANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVV 432

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKS-----------NQCKPDIITFNLLIDSYGKRQA 171
           T N ++D    NG +K+   +   M+            N  +PD+ T+N+LI        
Sbjct: 433 TCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGK 492

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
           F + E++++ + H    P   T+NS+I    K     +A  +F  M +  ++P+ +T+  
Sbjct: 493 FLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTT 552

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           +I  Y     V    E+F E+ + G      T   ++  +   G    A  +F+     G
Sbjct: 553 LINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASG 612

Query: 292 VTPDSSTYK-LLYKAYTKANMKELVQKL 318
           V PD+ T + +L   ++K  +K  V  L
Sbjct: 613 VYPDTITIRNMLTGLWSKEELKRAVAML 640



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 141/312 (45%), Gaps = 22/312 (7%)

Query: 29  LAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88
            A+  F ++   G  P    ++ L    LH       +++AL  F +M     CKPN+VT
Sbjct: 131 FALSTFGKITKLGFHPTVVTFSTL----LHGLCVEDRISEALDLFHQM-----CKPNVVT 181

Query: 89  YNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           +  L+   C + R V+ V AL   + E  L P+  TY  ++D   K G      ++L +M
Sbjct: 182 FTTLMNGLCREGRVVEAV-ALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKM 240

Query: 148 KS-NQCKPDIITFNL-----LIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIIN 200
           +  +  KP+++ + L     +I+ +     + + +Q+ + ++  K+  P + T+N++I  
Sbjct: 241 EEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINA 300

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKD 258
           + K     +AE ++ +M      PS ITY  +I   G+C  + +  A  +F  ++  G  
Sbjct: 301 FVKEGKFFEAEELYDEMLPRGIIPSTITYSSMID--GFCKQNRLDAAEHMFYLMATKGCS 358

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
             + T N ++  YC      +   L       G+  ++ TY  L   + +       Q L
Sbjct: 359 PDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDL 418

Query: 319 LKRMEQNGIVPN 330
           L+ M  +G+ PN
Sbjct: 419 LQEMVSSGVCPN 430



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 121/289 (41%), Gaps = 16/289 (5%)

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           + K L  A+  F  M    R  P+++ +  L+    +   +D V +L +++    +  + 
Sbjct: 55  EIKGLEDAIDLFGDMV-RSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPCNA 113

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           Y++  +M  +     +    S   ++      P ++TF+ L+         D++ +    
Sbjct: 114 YSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVE---DRISEAL-D 169

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC-- 239
           L H   KP + TF +++    +     +A  +  +M      P+ ITY  I+   G C  
Sbjct: 170 LFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVD--GMCKM 227

Query: 240 -DNVSRAREI--FDELSKLGKDMKVSTL---NAMLEAYCMNGLPTEAD-LLFENSHNMGV 292
            D VS    +   +E+S +  ++ +  L     M+  +C +G  +EA  LL E      +
Sbjct: 228 GDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKI 287

Query: 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           +PD  TY  L  A+ K       ++L   M   GI+P+   +   ++ F
Sbjct: 288 SPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGF 336


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 143/331 (43%), Gaps = 21/331 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI    K G    A   F EMR+ GC  +   Y AL+ A+L    KAK L +A
Sbjct: 322 DVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYL----KAKQLPQA 377

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL----------------H 113
              F +M     C PN +TY+ L+    +A  + +   ++ +L                H
Sbjct: 378 SDIFNRMID-AGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKH 436

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
              +AP++ TY  ++D   K   + + + +L  M SN C+P+ I ++ LID + K    D
Sbjct: 437 TDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKID 496

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
             ++VF  +      PT+ T+ S+I    K R    A  V  +M     TP+ +TY  +I
Sbjct: 497 NAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMI 556

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
                     +A ++   + + G    V T  A+++    +G    +  LF      G  
Sbjct: 557 DGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCA 616

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           P+  TY++L      A + +    LL  M+Q
Sbjct: 617 PNYVTYRVLINHCCAAGLLDEAHSLLSEMKQ 647



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 120/263 (45%), Gaps = 16/263 (6%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+  TY+ ++    +A  V++   LF+E+    + PD+YTY  ++D++ K G+I++  S 
Sbjct: 286 PDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSW 345

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
              M+S  C  +++T+  L+ +Y K +   +   +F  ++ +   P   T+++++    K
Sbjct: 346 FDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCK 405

Query: 204 ARLQGKAEYVFQKMTAM------------KYT----PSFITYECIITMYGYCDNVSRARE 247
           A    KA  V+ K+               K+T    P+ +TY  +I        V  A+E
Sbjct: 406 AGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQE 465

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + D +   G +      +A+++ +C  G    A  +F      G  P   TY  L  A  
Sbjct: 466 LLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMF 525

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           K    +L  K+L +M ++   PN
Sbjct: 526 KDRRLDLAMKVLSQMVESSCTPN 548



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/377 (21%), Positives = 146/377 (38%), Gaps = 69/377 (18%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I +   Y  L+    KK Q      + + M   GC P+PS++N+L+ ++ + RD   A  
Sbjct: 139 IPNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYA-- 196

Query: 68  KALGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVN--ALFKELHESILA----- 118
                ++ +K M  C   P  V YNI + +      +   +  AL ++++E +LA     
Sbjct: 197 -----YKLLKRMADCGCPPGYVAYNIFIGSICGGEELPSPDLLALAEKVYEEMLASSCVL 251

Query: 119 ----------------------------------PDIYTYNGVMDAYGKNGMIKEMESVL 144
                                             PD  TY+ V+    +   +++   + 
Sbjct: 252 NKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLF 311

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             MKS    PD+ T+ +LIDS+ K    ++    F  +        + T+ +++  Y KA
Sbjct: 312 QEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKA 371

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
           +   +A  +F +M      P+ ITY  ++        + +A E++ +L  +G    V + 
Sbjct: 372 KQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKL--IGTSDNVGS- 428

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
                           D  FE  H   + P+  TY  L     KA+     Q+LL  M  
Sbjct: 429 ----------------DFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLS 472

Query: 325 NGIVPNKRFFLEALETF 341
           NG  PN   +   ++ F
Sbjct: 473 NGCEPNHIIYDALIDGF 489



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 47/336 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K  +   A  L   M ++GC P+  +Y+ALI        K   +  A   F
Sbjct: 447 YGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFC----KVGKIDNAQEVF 502

Query: 74  QKMKGMERCK--PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M    +C   P + TY  L+ A  + R +D    +  ++ ES   P++ TY  ++D  
Sbjct: 503 LRMS---KCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGL 559

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G  ++   +LS M+   C P+++T+  LID  GK    D   Q+F  +      P  
Sbjct: 560 CRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNY 619

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC-------------------- 231
            T+  +I +   A L  +A  +  +M    Y P ++   C                    
Sbjct: 620 VTYRVLINHCCAAGLLDEAHSLLSEMK-QTYWPKYLQGYCSVVQGFSKKFIASLGLLEEL 678

Query: 232 -------IITMYGY-CDNVSRAR------EIFDELSKLGKDMKVSTLN---AMLEAYCMN 274
                  I  +YG   DN S+A       E+  E+ +L   + +++ +   ++++A C+ 
Sbjct: 679 ESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQALCLA 738

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
               +A  L+      GV P+ S +  L K   K N
Sbjct: 739 SQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVN 774



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 129/314 (41%), Gaps = 25/314 (7%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT + +++I+ + +      A+     MR + C P+   Y  L+T  L          K 
Sbjct: 106 DTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLKK--------KQ 157

Query: 70  LGYFQKMKGM---ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           LG+ +++  M   E C PN   +N L+ +   AR+      L K + +    P    YN 
Sbjct: 158 LGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNI 217

Query: 127 VMDAYGKN------GMIKEMESVLSRMKSNQC---KPDIITFNLLIDSYGKRQAFDKMEQ 177
            + +           ++   E V   M ++ C   K +   F   +   GK   FD   Q
Sbjct: 218 FIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGK---FDMAFQ 274

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           + K +M     P   T++ +I    +A    KA  +FQ+M ++   P   TY  +I  + 
Sbjct: 275 IIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFC 334

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC-MNGLPTEADLLFENSHNMGVTPDS 296
               + +AR  FDE+  +G    V T  A+L AY     LP  +D +F    + G  P++
Sbjct: 335 KAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASD-IFNRMIDAGCPPNT 393

Query: 297 STYKLLYKAYTKAN 310
            TY  L     KA 
Sbjct: 394 ITYSALVDGLCKAG 407



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 133/354 (37%), Gaps = 41/354 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSG---------------C-------------RPD 45
           Y+ L+ V+   GQ  +   +  EM  SG               C             R D
Sbjct: 43  YNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGRWSDALVMIERED 102

Query: 46  PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQV 105
             +   L T  +    +A    +A+ +  +M+    C PN+VTY  LL    + + +   
Sbjct: 103 FKLDTVLCTQMISGLMEASLFDEAISFLHRMR-CNSCIPNVVTYRTLLTGFLKKKQLGWC 161

Query: 106 NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
             +   + +    P+   +N ++ +Y           +L RM    C P  + +N+ I S
Sbjct: 162 KRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGS 221

Query: 166 YGKRQAFDK------MEQVFKSLMHSK---EKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
               +           E+V++ ++ S     K     F   +   GK  +   A  + + 
Sbjct: 222 ICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDM---AFQIIKV 278

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M    + P   TY  +IT       V +A  +F E+  +G +  V T   +++++C  GL
Sbjct: 279 MMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGL 338

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +A   F+   ++G + +  TY  L  AY KA        +  RM   G  PN
Sbjct: 339 IEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPN 392



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 136/319 (42%), Gaps = 28/319 (8%)

Query: 36  EMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95
           E+++ G RP  + YNAL+         A  +       ++M     C             
Sbjct: 30  ELKDFGYRPSGATYNALV----QVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQAL 85

Query: 96  CAQARNVDQVNALFKELH--ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
           C + R  D +  + +E    +++L   + +  G+M+A     +  E  S L RM+ N C 
Sbjct: 86  CKEGRWSDALVMIEREDFKLDTVLCTQMIS--GLMEA----SLFDEAISFLHRMRCNSCI 139

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P+++T+  L+  + K++     +++   +M     P    FNS++ +Y  AR    A  +
Sbjct: 140 PNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKL 199

Query: 214 FQKMTAMKYTPSFITYECIITMYGYC--------DNVSRAREIFDELSKLGKDMKVSTLN 265
            ++M      P ++ Y   I +   C        D ++ A ++++E+  L     ++ +N
Sbjct: 200 LKRMADCGCPPGYVAYN--IFIGSICGGEELPSPDLLALAEKVYEEM--LASSCVLNKVN 255

Query: 266 AMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
               A C+ G+  + D+ F+    M   G  PD+STY  +     +A   E    L + M
Sbjct: 256 TANFARCLCGM-GKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEM 314

Query: 323 EQNGIVPNKRFFLEALETF 341
           +  G+ P+   +   +++F
Sbjct: 315 KSVGVNPDVYTYTILIDSF 333


>gi|225450007|ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
           [Vitis vinifera]
          Length = 644

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 150/316 (47%), Gaps = 13/316 (4%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +++  I+ +   G    A  +F +M   G  PD   Y  ++  +     K K ++ AL Y
Sbjct: 325 VFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYC----KVKDISNALKY 380

Query: 73  FQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
             KM  +G+   +P++ TY +L+ +C +  N++    LF+ +    L PD+ +YN +M+ 
Sbjct: 381 LGKMLKRGI---RPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNG 437

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           YGK G +++   +LS M+S    PD++T+N+LI    KR   ++ + +   L      P 
Sbjct: 438 YGKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPD 497

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREI 248
           + TF ++I  +       +A  +F  M+     P  +T  C   + GYC    ++ A  +
Sbjct: 498 VVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVT--CSALLNGYCRTRCMAEANVL 555

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F ++   G    V   N+++  +C  G   +A  L       G+ P++ T+  L   Y K
Sbjct: 556 FHKMLDAGLKADVILYNSLIHGFCSLGNIDDACHLVSMMIEHGIMPNNITHHALVLGYEK 615

Query: 309 ANMKELVQKLLKRMEQ 324
             ++  V++   +++Q
Sbjct: 616 KCVENPVERAAFKLQQ 631



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 132/287 (45%), Gaps = 5/287 (1%)

Query: 44  PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD 103
           P+  V+N+ I+      +  KA AK    FQ M  M    P+  +Y  ++    + +++ 
Sbjct: 321 PNIFVFNSFISKLCTDGNMLKA-AKV---FQDMCEMGLI-PDCFSYTTMMAGYCKVKDIS 375

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
                  ++ +  + P + TY  ++D+  K G ++  E +  RM +    PD++++N L+
Sbjct: 376 NALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLM 435

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           + YGK+    K  ++   +  +   P L T+N +I    K  L  +A+ +  ++T   ++
Sbjct: 436 NGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFS 495

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
           P  +T+  II  +    N   A  +F  +S+   +  V T +A+L  YC      EA++L
Sbjct: 496 PDVVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEANVL 555

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           F    + G+  D   Y  L   +      +    L+  M ++GI+PN
Sbjct: 556 FHKMLDAGLKADVILYNSLIHGFCSLGNIDDACHLVSMMIEHGIMPN 602



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 141/324 (43%), Gaps = 20/324 (6%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y  L+    K+  T++A+ L  +MR+    P   V N+L+ A L    +++ L  A  +
Sbjct: 153 VYGMLVNCYVKENMTQVALKLICKMRHLNIFPLIGVCNSLLKALL----ESEQLNLAWDF 208

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            ++MK  +    N    ++ +       N+D    L  E+    + PD+  Y  V+D+  
Sbjct: 209 LKEMKS-QGLGLNASIISLFISGYCSQGNIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLC 267

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K  ++KE  S+L +M       D ++ + ++D Y K     K E+    L      P + 
Sbjct: 268 KMSLLKEATSILFKMTQMGVFLDSVSVSSVVDGYCK---VGKSEEAMDVLEVFNLSPNIF 324

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            FNS I          KA  VFQ M  M   P   +Y  +  M GYC    + ++I + L
Sbjct: 325 VFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTM--MAGYC----KVKDISNAL 378

Query: 253 SKLGKDMK------VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
             LGK +K      V+T   ++++ C  G    A+ LF+     G+ PD  +Y  L   Y
Sbjct: 379 KYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGY 438

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K    +   +LL  M   G+ P+
Sbjct: 439 GKKGHLQKAFELLSMMRSAGVSPD 462



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 110/260 (42%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           PNI  +N  +       N+ +   +F+++ E  L PD ++Y  +M  Y K   I      
Sbjct: 321 PNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNALKY 380

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L +M     +P + T+ LLIDS  K    +  E +F+ ++     P + ++N+++  YGK
Sbjct: 381 LGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGK 440

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
                KA  +   M +   +P  +TY  +I        V+ A++I DEL++ G    V T
Sbjct: 441 KGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVVT 500

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
              ++  +   G   EA LLF       + PD  T   L   Y +         L  +M 
Sbjct: 501 FTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEANVLFHKML 560

Query: 324 QNGIVPNKRFFLEALETFSS 343
             G+  +   +   +  F S
Sbjct: 561 DAGLKADVILYNSLIHGFCS 580



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 91/206 (44%), Gaps = 9/206 (4%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ L+   GKKG  + A  L S MR++G  PD   YN LI    H   K   + 
Sbjct: 425 VPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNILI----HGLIKRGLVN 480

Query: 68  KALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           +A     ++  +G     P++VT+  ++   +   N ++   LF  + E  L PD+ T +
Sbjct: 481 EAKDILDELTRRGF---SPDVVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCS 537

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++ Y +   + E   +  +M     K D+I +N LI  +      D    +   ++  
Sbjct: 538 ALLNGYCRTRCMAEANVLFHKMLDAGLKADVILYNSLIHGFCSLGNIDDACHLVSMMIEH 597

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAE 211
              P   T +++++ Y K  ++   E
Sbjct: 598 GIMPNNITHHALVLGYEKKCVENPVE 623



 Score = 42.4 bits (98), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R +  D   ++ +I     KG    A  LF  M      PD    +AL+  +  TR   
Sbjct: 491 RRGFSPDVVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTR--- 547

Query: 64  KALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             +A+A   F KM   G+   K +++ YN L+       N+D    L   + E  + P+ 
Sbjct: 548 -CMAEANVLFHKMLDAGL---KADVILYNSLIHGFCSLGNIDDACHLVSMMIEHGIMPNN 603

Query: 122 YTYNGVMDAYGK 133
            T++ ++  Y K
Sbjct: 604 ITHHALVLGYEK 615


>gi|125528270|gb|EAY76384.1| hypothetical protein OsI_04314 [Oryza sativa Indica Group]
          Length = 665

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 154/341 (45%), Gaps = 16/341 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R    D   YS L+A + + G    A+     M +    PD  +++ LI   L   D 
Sbjct: 155 RDRGVAPDAFSYSTLLAALTRAGHLDHALTFLPLMEDDAVAPDLVLFSNLIHLALRGGDA 214

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDI 121
            KALA     F +++G    KP++  YN  + A C      D    L  ++    +APD 
Sbjct: 215 PKALA----LFSRLRGAAGIKPDLKAYNAAIAAYCKSDLLRDANRLLLHDMPSDGVAPDA 270

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            +Y+ ++ A  + G      S+ + M++  + KPD+  FN+++++YG+     + +++F 
Sbjct: 271 ESYSPILAALARRGRHLAAVSLFTHMRTVARVKPDLSVFNIVLNAYGQLDLAREADRLFW 330

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK----------YTPSFITYE 230
           S+  +   P++ T+N+M+  YG A L G+A ++F  M +              P+ +TY 
Sbjct: 331 SMRRAGVAPSVVTYNTMLRVYGDAGLFGEAVHLFGLMRSAASDGSDRGGSVIKPNVVTYN 390

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
            +I +YG      +A  +  ++   G      T + +L  +   G    A  LFE     
Sbjct: 391 TMIAIYGKSLEDEKAGSLVQDMQANGIQPNAITYSTILSIWVKAGKLDRAGKLFEKLREA 450

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           G   D   Y+ +  AY +A +    ++LL  ++ +  VP +
Sbjct: 451 GTEIDPVLYQTMVVAYERAGLVSQSKRLLHDLKDSEDVPKE 491



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 165/369 (44%), Gaps = 57/369 (15%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-GCRPDPSVYNALITAHLHT---RDKAKA 65
           D  ++S LI +  + G    A+ LFS +R + G +PD   YNA I A+  +   RD  + 
Sbjct: 197 DLVLFSNLIHLALRGGDAPKALALFSRLRGAAGIKPDLKAYNAAIAAYCKSDLLRDANRL 256

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHE-SILAPDIYT 123
           L         M   +   P+  +Y+ +L A A+  R++  V+ LF  +   + + PD+  
Sbjct: 257 L------LHDMPS-DGVAPDAESYSPILAALARRGRHLAAVS-LFTHMRTVARVKPDLSV 308

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           +N V++AYG+  + +E + +   M+     P ++T+N ++  YG    F +   +F  LM
Sbjct: 309 FNIVLNAYGQLDLAREADRLFWSMRRAGVAPSVVTYNTMLRVYGDAGLFGEAVHLF-GLM 367

Query: 184 HSKE-----------KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 232
            S             KP + T+N+MI  YGK+    KA  + Q M A    P+ ITY  I
Sbjct: 368 RSAASDGSDRGGSVIKPNVVTYNTMIAIYGKSLEDEKAGSLVQDMQANGIQPNAITYSTI 427

Query: 233 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT-------------- 278
           ++++     + RA ++F++L + G ++       M+ AY   GL +              
Sbjct: 428 LSIWVKAGKLDRAGKLFEKLREAGTEIDPVLYQTMVVAYERAGLVSQSKRLLHDLKDSED 487

Query: 279 -----------------EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
                            EA  LF  + + G   D+S Y+++   + K+     V ++   
Sbjct: 488 VPKETAIKILANAGRVEEAAWLFRRAADAGDVRDTSVYRMMIDLFAKSRRHRSVIEVFDE 547

Query: 322 MEQNGIVPN 330
           M + G +P+
Sbjct: 548 MRKAGSLPD 556



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 118/293 (40%), Gaps = 48/293 (16%)

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           ++ YN+LLR+  +A  +   + L  E+ +  +APD ++Y+ ++ A  + G +    + L 
Sbjct: 128 LIPYNLLLRSACRAGMLRLASGLLLEMRDRGVAPDAFSYSTLLAALTRAGHLDHALTFLP 187

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKA 204
            M+ +   PD++ F+ LI    +     K   +F  L  +   KP L  +N+ I  Y K+
Sbjct: 188 LMEDDAVAPDLVLFSNLIHLALRGGDAPKALALFSRLRGAAGIKPDLKAYNAAIAAYCKS 247

Query: 205 RL---------------------------------QGK---AEYVFQKM-TAMKYTPSFI 227
            L                                 +G+   A  +F  M T  +  P   
Sbjct: 248 DLLRDANRLLLHDMPSDGVAPDAESYSPILAALARRGRHLAAVSLFTHMRTVARVKPDLS 307

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF--- 284
            +  ++  YG  D    A  +F  + + G    V T N ML  Y   GL  EA  LF   
Sbjct: 308 VFNIVLNAYGQLDLAREADRLFWSMRRAGVAPSVVTYNTMLRVYGDAGLFGEAVHLFGLM 367

Query: 285 -----ENSHNMG--VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                + S   G  + P+  TY  +   Y K+   E    L++ M+ NGI PN
Sbjct: 368 RSAASDGSDRGGSVIKPNVVTYNTMIAIYGKSLEDEKAGSLVQDMQANGIQPN 420



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 80/169 (47%), Gaps = 9/169 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS ++++  K G+   A  LF ++R +G   DP +Y  ++ A+    ++A  ++++    
Sbjct: 424 YSTILSIWVKAGKLDRAGKLFEKLREAGTEIDPVLYQTMVVAY----ERAGLVSQSKRLL 479

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             +K  E   P      IL    A A  V++   LF+   ++    D   Y  ++D + K
Sbjct: 480 HDLKDSEDV-PKETAIKIL----ANAGRVEEAAWLFRRAADAGDVRDTSVYRMMIDLFAK 534

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +   + +  V   M+     PD  T  + ++++GK + FDK   +++++
Sbjct: 535 SRRHRSVIEVFDEMRKAGSLPDSETIAITMNAHGKLKEFDKAAALYRAM 583



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/259 (20%), Positives = 102/259 (39%), Gaps = 52/259 (20%)

Query: 6   WYIADTGI------YSKLIAVMGKKGQTRLAMWLFSEMRNSG----------CRPDPSVY 49
           W +   G+      Y+ ++ V G  G    A+ LF  MR++            +P+   Y
Sbjct: 330 WSMRRAGVAPSVVTYNTMLRVYGDAGLFGEAVHLFGLMRSAASDGSDRGGSVIKPNVVTY 389

Query: 50  NALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALF 109
           N +I  +     K+    KA    Q M+     +PN +TY+ +L    +A  +D+   LF
Sbjct: 390 NTMIAIY----GKSLEDEKAGSLVQDMQA-NGIQPNAITYSTILSIWVKAGKLDRAGKLF 444

Query: 110 KELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP--------------- 154
           ++L E+    D   Y  ++ AY + G++ + + +L  +K ++  P               
Sbjct: 445 EKLREAGTEIDPVLYQTMVVAYERAGLVSQSKRLLHDLKDSEDVPKETAIKILANAGRVE 504

Query: 155 ----------------DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 198
                           D   + ++ID + K +    + +VF  +  +   P   T    +
Sbjct: 505 EAAWLFRRAADAGDVRDTSVYRMMIDLFAKSRRHRSVIEVFDEMRKAGSLPDSETIAITM 564

Query: 199 INYGKARLQGKAEYVFQKM 217
             +GK +   KA  +++ M
Sbjct: 565 NAHGKLKEFDKAAALYRAM 583


>gi|27545040|gb|AAO18446.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
 gi|108711829|gb|ABF99624.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 863

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/410 (23%), Positives = 159/410 (38%), Gaps = 73/410 (17%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRL------------------------------- 29
           MQ+Q W   D  I++ +I V+G++G   L                               
Sbjct: 124 MQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPSESRTALSYTSLIAAYARNA 183

Query: 30  ----AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKG--MERCK 83
               A  L  +M+ SG  P  + YN ++ A     D        LG F +M+       +
Sbjct: 184 LHEEARELLDQMKASGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDPSPSVR 243

Query: 84  PNIVTYN----------------ILLR-------------------ACAQARNVDQVNAL 108
           P++ TYN                +LLR                   A A A N+ +V  L
Sbjct: 244 PDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAEL 303

Query: 109 FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
           F E+  +   PD   Y G+M+A+   G   E  +VL +M+++ C P   T+ +L+D YG+
Sbjct: 304 FAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGR 363

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
           +  FD + ++F+  M +   P   T+N +   +G      +   +FQ M   +  P   T
Sbjct: 364 QGRFDGVRELFRE-MRTTVPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDT 422

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
            E ++   G       ARE+ D ++  G          ++EA     +  EA + F    
Sbjct: 423 CENVMVACGRGGLHEDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMT 482

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
            +G  P   TY  L  A+ K  + +  + +  RM  N  +   +   +AL
Sbjct: 483 EIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDAL 532



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 138/326 (42%), Gaps = 11/326 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + DT  Y  ++      G       LF+EM  +G  PDPS Y  L+ AH        A A
Sbjct: 278 LPDTASYRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHT----LVGATA 333

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A+   ++M+  + C P   TY +LL    +    D V  LF+E+  ++  PD  TYN +
Sbjct: 334 EAVAVLRQMQA-DGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTTV-PPDTATYNVL 391

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
              +G  G  KE+  +   M  ++ +PDI T   ++ + G+    +   +V   +     
Sbjct: 392 FRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGM 451

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            PT   +  ++   G A +  +A   F  MT +   P+  TY  +   +        A  
Sbjct: 452 VPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEA 511

Query: 248 IFDELSK---LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           IF  ++    + KD    + +A++EAYC      +A   +         PD  + + +  
Sbjct: 512 IFSRMTNNAAIQKDK--DSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLN 569

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
           AY  A + +  ++  + ++    VP+
Sbjct: 570 AYCIAGVIDESKEQFEELQSMVTVPS 595



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 132/301 (43%), Gaps = 27/301 (8%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARN--VDQVNALFKEL-HESILAPDIYTY 124
           ++L  F+ M+    C+P+   + I++    +     +D+   +F +L  ES  A    +Y
Sbjct: 116 RSLRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPSESRTA---LSY 172

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ----AFDKMEQVFK 180
             ++ AY +N + +E   +L +MK++   P   T+N ++ +  +       FD +  +F 
Sbjct: 173 TSLIAAYARNALHEEARELLDQMKASGVAPTAATYNTVLAACARATDPPVPFDMLLGLFA 232

Query: 181 SLMHSKE---KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
            + H      +P L T+N+++       L  ++E + + M      P   +Y  I+  + 
Sbjct: 233 EMRHDPSPSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFA 292

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
              N+SR  E+F E+S  G     S    ++EA+ + G   EA  +       G  P ++
Sbjct: 293 GAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAA 352

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR-------------FFLEALETFSSS 344
           TY++L   Y +    + V++L + M +  + P+               FF E +E F   
Sbjct: 353 TYRVLLDLYGRQGRFDGVRELFREM-RTTVPPDTATYNVLFRVFGDGGFFKEVVELFQDM 411

Query: 345 L 345
           L
Sbjct: 412 L 412



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 5/244 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  +G       A   F+ M   G  P    YNAL  A      K     +A   F
Sbjct: 458 YTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFA----KGGLFQEAEAIF 513

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M      + +  +++ L+ A  Q   +D     + E+ +S   PD  +  GV++AY  
Sbjct: 514 SRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCI 573

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G+I E +     ++S    P II + +++  Y +   +     + + +  ++   T   
Sbjct: 574 AGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQV 633

Query: 194 FNSMIIN-YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
             SMI   Y         EYV           S   +  ++ +  +     RA  + D+ 
Sbjct: 634 IASMIKGEYDDDSNWQMVEYVLDNSNLEGCDYSLRFFNALLDVLWWFGQKGRAARVLDQA 693

Query: 253 SKLG 256
            K G
Sbjct: 694 LKYG 697


>gi|410110111|gb|AFV61135.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           duartei]
          Length = 381

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 5/297 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++  G  PD   YNA+I        KAK   +
Sbjct: 2   GDLVLYSNLIELSRKLCDYSKAISIFSRLKRLGFXPDLVAYNAMINVF----GKAKLFRE 57

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +MK      PN  +Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 58  ARSLIGEMK-TAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMI 116

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +     +
Sbjct: 117 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIE 176

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSM++ YGK     KA  + Q+M +    P+ ITY  II+++G    + RA  +
Sbjct: 177 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAXL 236

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           F +L   G ++       M+ AY   GL   A  L          P  +   +L  A
Sbjct: 237 FQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGA 293



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 130/263 (49%), Gaps = 1/263 (0%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +KA+  F ++K +    P++V YN ++    +A+   +  +L  E+  + + P+  +Y+ 
Sbjct: 21  SKAISIFSRLKRLG-FXPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTTSYST 79

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +    
Sbjct: 80  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 139

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG      +A 
Sbjct: 140 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 199

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G +    T + ++  +   G    A  LF+   + GV  D   ++ +  AY
Sbjct: 200 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQILFQTMIVAY 259

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            +A +    ++LL  +++   +P
Sbjct: 260 ERAGLVAHAKRLLHELKRPDNIP 282



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 140/340 (41%), Gaps = 42/340 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L  EM+ +G  P+ + Y+ L+T ++     
Sbjct: 31  KRLGFXPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTTSYSTLLTMYVEN--- 87

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 88  -KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 146

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 147 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 206

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           S   +P+ IT++ +I  +GK    D+   +F+ L  S  +     F +MI+ Y +A L  
Sbjct: 207 SRGIEPNSITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQILFQTMIVAYERAGLVA 266

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++      P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 267 HAKRLLHELK----RPDNIPRDTAIHILAGAGRIEEATYVFRQXIDAGEVKDITVFERMI 322

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
                    +    +F+    +G  PDS    ++  AY K
Sbjct: 323 HLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGK 362



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 117/250 (46%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           ++V Y+ L+    +  +  +  ++F  L      PD+  YN +++ +GK  + +E  S++
Sbjct: 3   DLVLYSNLIELSRKLCDYSKAISIFSRLKRLGFXPDLVAYNAMINVFGKAKLFREARSLI 62

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             MK+    P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+ 
Sbjct: 63  GEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQL 122

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
            +  +A+ +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T 
Sbjct: 123 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 182

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N+M+  Y       +A+ L +   + G+ P+S TY  +   + K    +    L +++  
Sbjct: 183 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAXLFQKLRS 242

Query: 325 NGIVPNKRFF 334
           +G+  ++  F
Sbjct: 243 SGVEIDQILF 252



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 114/271 (42%), Gaps = 36/271 (13%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           +I V G+ G  + A  LF  MR  G  P+   YN L+  +      A+   +A+  F+ M
Sbjct: 115 MIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY----GDAELFGEAIHLFRLM 170

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +  +  + N+VTYN ++    +    ++ N L +E+    + P+  TY+ ++  +GK G 
Sbjct: 171 Q-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGK 229

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSY--------GKRQAFD--------------- 173
           +     +  +++S+  + D I F  +I +Y         KR   +               
Sbjct: 230 LDRAAXLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHI 289

Query: 174 -----KMEQ---VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
                ++E+   VF+  + + E   +  F  MI    K +       VF KM  + Y P 
Sbjct: 290 LAGAGRIEEATYVFRQXIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPD 349

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLG 256
                 ++  YG      +A +++ E+ ++G
Sbjct: 350 SDVIAIVLNAYGKLQEFDKANDVYMEMQEVG 380


>gi|388499386|gb|AFK37759.1| unknown [Lotus japonicus]
          Length = 500

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 138/307 (44%), Gaps = 40/307 (13%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+  I  + K G    A  +F  M+  GC+P    Y  LI  +L+ +D    +A  L  
Sbjct: 234 VYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTETYTMLI--NLYGKDGKSFMA--LKV 289

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F +M    +CKPNI TY  L+ A A+    ++   +F+++ E+ L PD+Y+YN +M+AY 
Sbjct: 290 FNEMLS-HKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYSYNALMEAYS 348

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + G       + S M+   C+PD  ++N+L+D+YG+    +  E V              
Sbjct: 349 RAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLNDAEAV-------------- 394

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
                                F+ M  +  TP+  ++  +++ +    NVS+  +I +++
Sbjct: 395 ---------------------FEDMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDILNQM 433

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            K G  +    LN+ML  Y   G   + + +     N     D STY +L   Y +A   
Sbjct: 434 CKSGLKLDTFVLNSMLNLYGRLGQFGKMEEVLTVMENGSCEADISTYNILINRYGQAGFI 493

Query: 313 ELVQKLL 319
           + ++ L 
Sbjct: 494 DKMEGLF 500



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 138/288 (47%), Gaps = 5/288 (1%)

Query: 40  SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 99
           S  + D   YN LI A        +A +    Y Q ++   RC PN  TY +L++A   +
Sbjct: 156 SSFKQDVICYNLLIDAFGQKFLYKEAEST---YLQLLEA--RCIPNEDTYALLIKAYCLS 210

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
             +++  A+F E+    L      YN  ++   K G   + E +  RMK + CKP   T+
Sbjct: 211 GLLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTETY 270

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
            +LI+ YGK        +VF  ++  K KP + T+ +++  + +  L  KAE VF++M  
Sbjct: 271 TMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQE 330

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
               P   +Y  ++  Y        A EIF  +  +G +   ++ N +++AY   G   +
Sbjct: 331 AGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLND 390

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           A+ +FE+   +G+TP   ++ +L  A++K       + +L +M ++G+
Sbjct: 391 AEAVFEDMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKSGL 438



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 129/262 (49%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           K +++ YN+L+ A  Q     +  + + +L E+   P+  TY  ++ AY  +G++++ E+
Sbjct: 159 KQDVICYNLLIDAFGQKFLYKEAESTYLQLLEARCIPNEDTYALLIKAYCLSGLLEKAEA 218

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           V   MK+       + +N  I+   K    +K E++F  +     KP+  T+  +I  YG
Sbjct: 219 VFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTETYTMLINLYG 278

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           K      A  VF +M + K  P+  TY  ++  +       +A E+F+++ + G +  V 
Sbjct: 279 KDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVY 338

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           + NA++EAY   G P  A  +F    +MG  PD ++Y +L  AY +A      + + + M
Sbjct: 339 SYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLNDAEAVFEDM 398

Query: 323 EQNGIVPNKRFFLEALETFSSS 344
           ++ GI P  +  +  L  FS +
Sbjct: 399 KRVGITPTMKSHMVLLSAFSKT 420


>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
 gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
          Length = 447

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 162/356 (45%), Gaps = 39/356 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL------- 66
           Y+ LI    K GQ   A+ +FS+M++SG  P+ S  N L+         + AL       
Sbjct: 28  YNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQ 87

Query: 67  ---------------------AKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVD 103
                                 +A+ +F++MK  G+E   P++ +Y+ILL A + +  + 
Sbjct: 88  AGPFLPTSASHNILLRGFFMAGRAIEFFKEMKASGVE---PDLESYHILLSALSDSGRMA 144

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           + +ALF  +     +PDI TYN +MD Y K G   E +S++  +     +P++ T++++I
Sbjct: 145 EAHALFSAM---TCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIII 201

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           + Y K    ++  +VF  ++ S   P   TFN++I  + KA +   A  +F +M  +   
Sbjct: 202 NCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCK 261

Query: 224 PSFITYECII-TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
            + +TY  +I ++      V  A ++F++L   G    + T N++++ +  +    +   
Sbjct: 262 ATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGF--SERANDGLR 319

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           L  + H  G  PD  TY  L      AN  E  Q+L   M     V    F +  L
Sbjct: 320 LLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFNGMACAPNVTTFNFLIRGL 375



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 137/295 (46%), Gaps = 16/295 (5%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+  F EM+ SG  PD   Y+ L++A     D  + +A+A   F  M     C P+I+TY
Sbjct: 111 AIEFFKEMKASGVEPDLESYHILLSA---LSDSGR-MAEAHALFSAMT----CSPDIMTY 162

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           N+L+    +     +  +L KE+ ++   P+++TY+ +++ Y K   ++E   V  +M  
Sbjct: 163 NVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIE 222

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG- 208
           + C P+ +TFN LI  + K    +   ++F  +     K T+ T+N++I +  K R  G 
Sbjct: 223 SNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKR-GGV 281

Query: 209 -KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
             A  +F K+     TP+ +TY  +I   G+ +  +    +   +   G    V T N +
Sbjct: 282 YTAVDLFNKLEGAGLTPTIVTYNSLIQ--GFSERANDGLRLLCHMHAEGCKPDVITYNCL 339

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           +   C      +A  LF   + M   P+ +T+  L +        E  + +L RM
Sbjct: 340 ISGLCSANRVEDAQRLF---NGMACAPNVTTFNFLIRGLCAQKKVEEARNILDRM 391



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 148/323 (45%), Gaps = 28/323 (8%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD--KAKALAKAL- 70
           Y  L++ +   G+   A  LFS M    C PD   YN L+  +       +A++L K + 
Sbjct: 130 YHILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEIL 186

Query: 71  --GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
             GY          +PN+ TY+I++    +   V++   +F ++ ES   P+  T+N ++
Sbjct: 187 KAGY----------EPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLI 236

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-RQAFDKMEQVFKSLMHSKE 187
             + K GM+++   + + M+   CK  I+T+N LIDS  K R        +F  L  +  
Sbjct: 237 AGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGL 296

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            PT+ T+NS+I  + +    G    +   M A    P  ITY C+I+     + V  A+ 
Sbjct: 297 TPTIVTYNSLIQGFSERANDGLR--LLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQR 354

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F+ ++       V+T N ++   C      EA     N  +    PD +T+  +  A+ 
Sbjct: 355 LFNGMACAPN---VTTFNFLIRGLCAQKKVEEA----RNILDRMTAPDMTTFNTIILAFC 407

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           KA      ++++K M ++G  PN
Sbjct: 408 KAGAMHDAREVMKDMLKHGFYPN 430



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 110/249 (44%), Gaps = 13/249 (5%)

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
           AR  DQ   LFKE+   + AP+ +TYN ++  + K G + +  SV S MKS+   P+  T
Sbjct: 3   ARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNAST 62

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
            N L+    +     +M    K     +  P LPT  S  I      + G+A   F++M 
Sbjct: 63  MNTLLLGLCE---IGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRAIEFFKEMK 119

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           A    P   +Y  +++       ++ A  +F   S +     + T N +++ YC  G   
Sbjct: 120 ASGVEPDLESYHILLSALSDSGRMAEAHALF---SAMTCSPDIMTYNVLMDGYCKIGQTY 176

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           EA  L +     G  P+  TY ++   Y K +  E   ++  +M ++  VPN        
Sbjct: 177 EAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAV------ 230

Query: 339 ETFSSSLAG 347
            TF++ +AG
Sbjct: 231 -TFNTLIAG 238



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 107/248 (43%), Gaps = 16/248 (6%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           PN  TYN+L+R   +   + Q  ++F ++  S L P+  T N ++    + G +     +
Sbjct: 23  PNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKL 82

Query: 144 LSRMKSNQCKPDIITFNLLIDSY---GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
              M++    P   + N+L+  +   G+   F      FK +  S  +P L +++ ++  
Sbjct: 83  FREMQAGPFLPTSASHNILLRGFFMAGRAIEF------FKEMKASGVEPDLESYHILLSA 136

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKD 258
              +    +A  +F  MT    +P  +TY   + M GYC       A+ +  E+ K G +
Sbjct: 137 LSDSGRMAEAHALFSAMTC---SPDIMTYN--VLMDGYCKIGQTYEAQSLMKEILKAGYE 191

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
             V T + ++  YC      EA  +F         P++ T+  L   + KA M E   KL
Sbjct: 192 PNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKL 251

Query: 319 LKRMEQNG 326
              ME+ G
Sbjct: 252 FAEMEKIG 259



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 14/130 (10%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
            + L   M   GC+PD   YN LI+        A  +  A   F  M     C PN+ T+
Sbjct: 317 GLRLLCHMHAEGCKPDVITYNCLISGLC----SANRVEDAQRLFNGMA----CAPNVTTF 368

Query: 90  NILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           N L+R  CAQ +  +  N L     + + APD+ T+N ++ A+ K G + +   V+  M 
Sbjct: 369 NFLIRGLCAQKKVEEARNIL-----DRMTAPDMTTFNTIILAFCKAGAMHDAREVMKDML 423

Query: 149 SNQCKPDIIT 158
            +   P+  T
Sbjct: 424 KHGFYPNTYT 433


>gi|115440859|ref|NP_001044709.1| Os01g0833000 [Oryza sativa Japonica Group]
 gi|20805252|dbj|BAB92918.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113534240|dbj|BAF06623.1| Os01g0833000 [Oryza sativa Japonica Group]
          Length = 665

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 154/341 (45%), Gaps = 16/341 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R    D   YS L+A + + G    A+     M +    PD  +++ LI   L   D 
Sbjct: 155 RDRGVAPDAFSYSTLLAALTRAGHLDHALTFLPLMEDDAVAPDLVLFSNLIHLALRGGDA 214

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDI 121
            KALA     F +++G    KP++  YN  + A C      D    L  ++    +APD 
Sbjct: 215 PKALA----LFSRLRGAAGIKPDLKAYNAAIAAYCKSDLLRDANRLLLHDMPSDGVAPDA 270

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            +Y+ ++ A  + G      S+ + M++  + KPD+  FN+++++YG+     + +++F 
Sbjct: 271 ESYSPILAALARRGRHLAAVSLFTHMRAVARVKPDLSVFNIVLNAYGQLDLAREADRLFW 330

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK----------YTPSFITYE 230
           S+  +   P++ T+N+M+  YG A L G+A ++F  M +              P+ +TY 
Sbjct: 331 SMRRAGVAPSVVTYNTMLRVYGDAGLFGEAVHLFGLMRSAASDGSDRGGSVIKPNVVTYN 390

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
            +I +YG      +A  +  ++   G      T + +L  +   G    A  LFE     
Sbjct: 391 TMIAIYGKSLEDEKAGSLVQDMQANGIQPNAITYSTILSIWVKAGKLDRAGKLFEKLREA 450

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           G   D   Y+ +  AY +A +    ++LL  ++ +  VP +
Sbjct: 451 GTEIDPVLYQTMVVAYERAGLVSQSKRLLHDLKDSEDVPKE 491



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 165/369 (44%), Gaps = 57/369 (15%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-GCRPDPSVYNALITAHLHT---RDKAKA 65
           D  ++S LI +  + G    A+ LFS +R + G +PD   YNA I A+  +   RD  + 
Sbjct: 197 DLVLFSNLIHLALRGGDAPKALALFSRLRGAAGIKPDLKAYNAAIAAYCKSDLLRDANRL 256

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHE-SILAPDIYT 123
           L         M   +   P+  +Y+ +L A A+  R++  V+ LF  +   + + PD+  
Sbjct: 257 L------LHDMPS-DGVAPDAESYSPILAALARRGRHLAAVS-LFTHMRAVARVKPDLSV 308

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           +N V++AYG+  + +E + +   M+     P ++T+N ++  YG    F +   +F  LM
Sbjct: 309 FNIVLNAYGQLDLAREADRLFWSMRRAGVAPSVVTYNTMLRVYGDAGLFGEAVHLF-GLM 367

Query: 184 HSKE-----------KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 232
            S             KP + T+N+MI  YGK+    KA  + Q M A    P+ ITY  I
Sbjct: 368 RSAASDGSDRGGSVIKPNVVTYNTMIAIYGKSLEDEKAGSLVQDMQANGIQPNAITYSTI 427

Query: 233 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT-------------- 278
           ++++     + RA ++F++L + G ++       M+ AY   GL +              
Sbjct: 428 LSIWVKAGKLDRAGKLFEKLREAGTEIDPVLYQTMVVAYERAGLVSQSKRLLHDLKDSED 487

Query: 279 -----------------EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
                            EA  LF  + + G   D+S Y+++   + K+     V ++   
Sbjct: 488 VPKETAIKILANAGRVEEAAWLFRRAADAGDVRDTSVYRMMIDLFAKSRRHRSVIEVFDE 547

Query: 322 MEQNGIVPN 330
           M + G +P+
Sbjct: 548 MRKAGSLPD 556



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 119/293 (40%), Gaps = 48/293 (16%)

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           ++ YN+LLR+  +A  +   + L  E+ +  +APD ++Y+ ++ A  + G +    + L 
Sbjct: 128 LIPYNLLLRSACRAGMLRLASGLLLEMRDRGVAPDAFSYSTLLAALTRAGHLDHALTFLP 187

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKA 204
            M+ +   PD++ F+ LI    +     K   +F  L  +   KP L  +N+ I  Y K+
Sbjct: 188 LMEDDAVAPDLVLFSNLIHLALRGGDAPKALALFSRLRGAAGIKPDLKAYNAAIAAYCKS 247

Query: 205 RL---------------------------------QGK---AEYVFQKMTAM-KYTPSFI 227
            L                                 +G+   A  +F  M A+ +  P   
Sbjct: 248 DLLRDANRLLLHDMPSDGVAPDAESYSPILAALARRGRHLAAVSLFTHMRAVARVKPDLS 307

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF--- 284
            +  ++  YG  D    A  +F  + + G    V T N ML  Y   GL  EA  LF   
Sbjct: 308 VFNIVLNAYGQLDLAREADRLFWSMRRAGVAPSVVTYNTMLRVYGDAGLFGEAVHLFGLM 367

Query: 285 -----ENSHNMG--VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                + S   G  + P+  TY  +   Y K+   E    L++ M+ NGI PN
Sbjct: 368 RSAASDGSDRGGSVIKPNVVTYNTMIAIYGKSLEDEKAGSLVQDMQANGIQPN 420



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 80/169 (47%), Gaps = 9/169 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS ++++  K G+   A  LF ++R +G   DP +Y  ++ A+    ++A  ++++    
Sbjct: 424 YSTILSIWVKAGKLDRAGKLFEKLREAGTEIDPVLYQTMVVAY----ERAGLVSQSKRLL 479

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             +K  E   P      IL    A A  V++   LF+   ++    D   Y  ++D + K
Sbjct: 480 HDLKDSEDV-PKETAIKIL----ANAGRVEEAAWLFRRAADAGDVRDTSVYRMMIDLFAK 534

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +   + +  V   M+     PD  T  + ++++GK + FDK   +++++
Sbjct: 535 SRRHRSVIEVFDEMRKAGSLPDSETIAITMNAHGKLKEFDKAAALYRAM 583



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 52/259 (20%), Positives = 102/259 (39%), Gaps = 52/259 (20%)

Query: 6   WYIADTGI------YSKLIAVMGKKGQTRLAMWLFSEMRNSG----------CRPDPSVY 49
           W +   G+      Y+ ++ V G  G    A+ LF  MR++            +P+   Y
Sbjct: 330 WSMRRAGVAPSVVTYNTMLRVYGDAGLFGEAVHLFGLMRSAASDGSDRGGSVIKPNVVTY 389

Query: 50  NALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALF 109
           N +I  +     K+    KA    Q M+     +PN +TY+ +L    +A  +D+   LF
Sbjct: 390 NTMIAIY----GKSLEDEKAGSLVQDMQA-NGIQPNAITYSTILSIWVKAGKLDRAGKLF 444

Query: 110 KELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP--------------- 154
           ++L E+    D   Y  ++ AY + G++ + + +L  +K ++  P               
Sbjct: 445 EKLREAGTEIDPVLYQTMVVAYERAGLVSQSKRLLHDLKDSEDVPKETAIKILANAGRVE 504

Query: 155 ----------------DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 198
                           D   + ++ID + K +    + +VF  +  +   P   T    +
Sbjct: 505 EAAWLFRRAADAGDVRDTSVYRMMIDLFAKSRRHRSVIEVFDEMRKAGSLPDSETIAITM 564

Query: 199 INYGKARLQGKAEYVFQKM 217
             +GK +   KA  +++ M
Sbjct: 565 NAHGKLKEFDKAAALYRAM 583


>gi|168011113|ref|XP_001758248.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690704|gb|EDQ77070.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 658

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 154/322 (47%), Gaps = 15/322 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI    + G+   A   F  M+      +  +Y+ L+ A+ + R       +  G  
Sbjct: 292 YGLLIDAYSRAGRLDQAKAAFHNMKVENVPANAFIYSRLMVAYRNAR-------QWDGTI 344

Query: 74  QKMKGM--ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           + +K M     KPN   +NIL+    +   + Q    F ++ +    PD+ T+N +++A+
Sbjct: 345 RLLKDMYASNIKPNQFIFNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAH 404

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G+I E   +L +M+  +C P + T+N+++++ G    + +M  +   +      P +
Sbjct: 405 CRAGLITEALDLLKQMQERECVPSLHTYNIILNALGWHNRWKEMALLLDEMRFKGLDPNV 464

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY---GYCDNVSRAREI 248
            T+ +++ +YG ++   +A    ++M +    PS   Y  +   Y   G C+   +A E+
Sbjct: 465 VTYTTLVDSYGTSKRYREASEYLKQMKSQGLQPSTSVYCALANSYAKRGLCE---QAMEV 521

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F  + K G ++ +S LN ++ A+ + G   EA  +F+    +G++PD  TY  L KA  K
Sbjct: 522 FKSMEKDGVELNLSMLNLLINAFGVAGKYVEAFSVFDYILEVGMSPDVVTYTTLMKALIK 581

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
           A   + V  + ++M + G  P+
Sbjct: 582 AEQLDQVPDVYEQMVRAGCTPD 603



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 136/312 (43%), Gaps = 9/312 (2%)

Query: 35  SEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK--PNIVTYNIL 92
           + +   G   D  +YN +I A+    D  KA       FQ M  M+ C   P++ +Y+ L
Sbjct: 173 ANIEQEGLEMDTKLYNDVINAYCRAGDPDKA-------FQYMGLMQACDLVPDVRSYSSL 225

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +      R +D   A + E+       ++ T N ++ AY +  +++++E ++   +    
Sbjct: 226 IETLVVVRRLDDAEAAYAEMKSKSYKINLRTLNALLSAYTRKSLLEQVEKLMQDAEDAGL 285

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           K    ++ LLID+Y +    D+ +  F ++           ++ +++ Y  AR       
Sbjct: 286 KLSTFSYGLLIDAYSRAGRLDQAKAAFHNMKVENVPANAFIYSRLMVAYRNARQWDGTIR 345

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           + + M A    P+   +  +I  YG    + +A   F ++ K G    V T N+++EA+C
Sbjct: 346 LLKDMYASNIKPNQFIFNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHC 405

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             GL TEA  L +        P   TY ++  A    N  + +  LL  M   G+ PN  
Sbjct: 406 RAGLITEALDLLKQMQERECVPSLHTYNIILNALGWHNRWKEMALLLDEMRFKGLDPNVV 465

Query: 333 FFLEALETFSSS 344
            +   ++++ +S
Sbjct: 466 TYTTLVDSYGTS 477



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 147/351 (41%), Gaps = 43/351 (12%)

Query: 18  IAVMGKKGQTRL--AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQK 75
           IA+ G   ++R+  AM LF +++  G  P P  YNA++     T  +   L  AL    +
Sbjct: 83  IAITGLSKESRVEEAMLLFDQLKQLGVSPGPMAYNAIV----GTCAREDRLETALELMNQ 138

Query: 76  MKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           M+G    +P+ V Y ++ +ACA+ R  VD ++ +   + +  L  D   YN V++AY + 
Sbjct: 139 MRG-SGFQPDNVNYTLVFQACAKKRVGVDVISRVCANIEQEGLEMDTKLYNDVINAYCRA 197

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G   +    +  M++    PD+ +++ LI++    +  D  E  +  +     K  L T 
Sbjct: 198 GDPDKAFQYMGLMQACDLVPDVRSYSSLIETLVVVRRLDDAEAAYAEMKSKSYKINLRTL 257

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF----- 249
           N+++  Y +  L  + E + Q         S  +Y  +I  Y     + +A+  F     
Sbjct: 258 NALLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQAKAAFHNMKV 317

Query: 250 -----------------------DELSKLGKDMKVSTL-------NAMLEAYCMNGLPTE 279
                                  D   +L KDM  S +       N +++ Y   G   +
Sbjct: 318 ENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTYGKFGRLPQ 377

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           A   F      G  PD  T+  L +A+ +A +      LLK+M++   VP+
Sbjct: 378 AMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQERECVPS 428



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 140/325 (43%), Gaps = 5/325 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT +Y+ +I    + G    A      M+     PD   Y++LI   +  R     L  A
Sbjct: 183 DTKLYNDVINAYCRAGDPDKAFQYMGLMQACDLVPDVRSYSSLIETLVVVR----RLDDA 238

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              + +MK  +  K N+ T N LL A  +   ++QV  L ++  ++ L    ++Y  ++D
Sbjct: 239 EAAYAEMKS-KSYKINLRTLNALLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLID 297

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           AY + G + + ++    MK      +   ++ L+ +Y   + +D   ++ K +  S  KP
Sbjct: 298 AYSRAGRLDQAKAAFHNMKVENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNIKP 357

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               FN +I  YGK     +A   F +M    + P  +T+  +I  +     ++ A ++ 
Sbjct: 358 NQFIFNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALDLL 417

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            ++ +      + T N +L A   +    E  LL +     G+ P+  TY  L  +Y  +
Sbjct: 418 KQMQERECVPSLHTYNIILNALGWHNRWKEMALLLDEMRFKGLDPNVVTYTTLVDSYGTS 477

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
                  + LK+M+  G+ P+   +
Sbjct: 478 KRYREASEYLKQMKSQGLQPSTSVY 502



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 9/151 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+   G   + R A     +M++ G +P  SVY AL  ++     K     +A+  F
Sbjct: 467 YTTLVDSYGTSKRYREASEYLKQMKSQGLQPSTSVYCALANSYA----KRGLCEQAMEVF 522

Query: 74  QKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           + M+  G+E    N+   N+L+ A   A    +  ++F  + E  ++PD+ TY  +M A 
Sbjct: 523 KSMEKDGVEL---NLSMLNLLINAFGVAGKYVEAFSVFDYILEVGMSPDVVTYTTLMKAL 579

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
            K   + ++  V  +M    C PD +  ++L
Sbjct: 580 IKAEQLDQVPDVYEQMVRAGCTPDDMAKDML 610


>gi|147771903|emb|CAN75708.1| hypothetical protein VITISV_031421 [Vitis vinifera]
          Length = 1313

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 164/367 (44%), Gaps = 41/367 (11%)

Query: 11   TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
            T  Y+ LI + GK G+ + A  +F+EM   G   D   +N +I    +T      L++A 
Sbjct: 650  TATYNTLIDLYGKAGRLKDAADVFAEMLKLGVAMDTITFNTMI----YTCGSHGHLSEAE 705

Query: 71   GYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                +M+  ER   P+  TYNI L   A   N+D     ++++ E  L PD+ T+  V+ 
Sbjct: 706  TLLTEME--ERGISPDTKTYNIFLSLYADGGNIDAALKCYRKIREVGLFPDVVTHRAVLH 763

Query: 130  AYGKNGMIKEMESVLSRMKSNQCK------PDII-------------------------- 157
               +  M+ E+E+V++ MK ++ +      P +I                          
Sbjct: 764  VLCERNMVGEVETVIAEMKRSRVRVDEHSIPVVIKMYVNEGLLDKAKIFLEEHLLEDELS 823

Query: 158  --TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
              T   +ID+Y ++  + + E VF       +K  +  +N M+  YGKA+L  KA  +F+
Sbjct: 824  SRTRVAIIDAYAEKGLWAEAENVFIGKRDLGQKKDVVEYNVMVKAYGKAKLYDKAFSLFK 883

Query: 216  KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
             M      P+  TY  +I M+   D V  AR+I  E+ K+G   +  T +A++  Y   G
Sbjct: 884  GMRNHGTWPNESTYNSLIQMFSGGDLVDEARDILAEMQKMGFKPQCLTFSAVIACYARLG 943

Query: 276  LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335
               +A  ++E    +GV P+   Y  L   +++    E      ++M++ GI  N+    
Sbjct: 944  RLPDAVGVYEEMVRLGVKPNEVVYGSLINGFSETGNVEEALCYFRKMDEFGISANQIVLT 1003

Query: 336  EALETFS 342
              ++ +S
Sbjct: 1004 SLIKAYS 1010



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 144/348 (41%), Gaps = 39/348 (11%)

Query: 10   DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
            DT  ++ +I   G  G    A  L +EM   G  PD   YN  ++ +    +    +  A
Sbjct: 684  DTITFNTMIYTCGSHGHLSEAETLLTEMEERGISPDTKTYNIFLSLYADGGN----IDAA 739

Query: 70   LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD--------- 120
            L  ++K++ +    P++VT+  +L    +   V +V  +  E+  S +  D         
Sbjct: 740  LKCYRKIREVG-LFPDVVTHRAVLHVLCERNMVGEVETVIAEMKRSRVRVDEHSIPVVIK 798

Query: 121  IYTYNG-------------------------VMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
            +Y   G                         ++DAY + G+  E E+V    +    K D
Sbjct: 799  MYVNEGLLDKAKIFLEEHLLEDELSSRTRVAIIDAYAEKGLWAEAENVFIGKRDLGQKKD 858

Query: 156  IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
            ++ +N+++ +YGK + +DK   +FK + +    P   T+NS+I  +    L  +A  +  
Sbjct: 859  VVEYNVMVKAYGKAKLYDKAFSLFKGMRNHGTWPNESTYNSLIQMFSGGDLVDEARDILA 918

Query: 216  KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            +M  M + P  +T+  +I  Y     +  A  +++E+ +LG         +++  +   G
Sbjct: 919  EMQKMGFKPQCLTFSAVIACYARLGRLPDAVGVYEEMVRLGVKPNEVVYGSLINGFSETG 978

Query: 276  LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
               EA   F      G++ +      L KAY+K    E  + L + M+
Sbjct: 979  NVEEALCYFRKMDEFGISANQIVLTSLIKAYSKVGCLEGAKTLYEGMK 1026



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 121/284 (42%), Gaps = 21/284 (7%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           + L  F+ +K  E   PN++ YN++LR   +A+  D++   + E+ ++ + P   TY  +
Sbjct: 471 RVLRVFEWIKSQEDYVPNVIHYNVVLRVLGRAQKWDELRLCWIEMAKNGVLPTNNTYGML 530

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK- 186
           +D YGK G++KE    +  MK     PD +T N ++        FD  ++ ++     K 
Sbjct: 531 VDVYGKAGLVKEALLWIKHMKLRGVFPDEVTMNTVVRVLKDAGEFDWADRFYRDWCVGKV 590

Query: 187 ---------------EKPTLPTFNSMIINYGKARLQGKAEYV----FQKMTAMKYTPSFI 227
                          E  + P      ++    ++ G+               ++ P   
Sbjct: 591 ELGDFDLESVADSDDEIGSAPVSLKHFLSTELFKIGGRRPISNIMDSSNTDGSRHKPRLT 650

Query: 228 -TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
            TY  +I +YG    +  A ++F E+ KLG  M   T N M+     +G  +EA+ L   
Sbjct: 651 ATYNTLIDLYGKAGRLKDAADVFAEMLKLGVAMDTITFNTMIYTCGSHGHLSEAETLLTE 710

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
               G++PD+ TY +    Y      +   K  +++ + G+ P+
Sbjct: 711 MEERGISPDTKTYNIFLSLYADGGNIDAALKCYRKIREVGLFPD 754



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 121/265 (45%), Gaps = 2/265 (0%)

Query: 81  RCKPNIV-TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
           R KP +  TYN L+    +A  +     +F E+ +  +A D  T+N ++   G +G + E
Sbjct: 644 RHKPRLTATYNTLIDLYGKAGRLKDAADVFAEMLKLGVAMDTITFNTMIYTCGSHGHLSE 703

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
            E++L+ M+     PD  T+N+ +  Y      D   + ++ +      P + T  +++ 
Sbjct: 704 AETLLTEMEERGISPDTKTYNIFLSLYADGGNIDAALKCYRKIREVGLFPDVVTHRAVLH 763

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
              +  + G+ E V  +M   +      +   +I MY     + +A+ IF E   L  ++
Sbjct: 764 VLCERNMVGEVETVIAEMKRSRVRVDEHSIPVVIKMYVNEGLLDKAK-IFLEEHLLEDEL 822

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
              T  A+++AY   GL  EA+ +F    ++G   D   Y ++ KAY KA + +    L 
Sbjct: 823 SSRTRVAIIDAYAEKGLWAEAENVFIGKRDLGQKKDVVEYNVMVKAYGKAKLYDKAFSLF 882

Query: 320 KRMEQNGIVPNKRFFLEALETFSSS 344
           K M  +G  PN+  +   ++ FS  
Sbjct: 883 KGMRNHGTWPNESTYNSLIQMFSGG 907



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 120/262 (45%), Gaps = 1/262 (0%)

Query: 83   KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
            K ++V YN++++A  +A+  D+  +LFK +      P+  TYN ++  +    ++ E   
Sbjct: 856  KKDVVEYNVMVKAYGKAKLYDKAFSLFKGMRNHGTWPNESTYNSLIQMFSGGDLVDEARD 915

Query: 143  VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
            +L+ M+    KP  +TF+ +I  Y +         V++ ++    KP    + S+I  + 
Sbjct: 916  ILAEMQKMGFKPQCLTFSAVIACYARLGRLPDAVGVYEEMVRLGVKPNEVVYGSLINGFS 975

Query: 203  KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
            +     +A   F+KM     + + I    +I  Y     +  A+ +++ +  L     + 
Sbjct: 976  ETGNVEEALCYFRKMDEFGISANQIVLTSLIKAYSKVGCLEGAKTLYEGMKDLEGGPDIV 1035

Query: 263  TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
              N+M+  Y   GL +EA L+F++    G + D  ++  +   Y    M +    +   M
Sbjct: 1036 ASNSMINLYADLGLVSEAKLIFDDLRQKG-SADGVSFATMMYLYKNLGMLDEAIDVADEM 1094

Query: 323  EQNGIVPNKRFFLEALETFSSS 344
            +Q+G + +   F + +  ++++
Sbjct: 1095 KQSGFLRDCASFNKVMACYATN 1116



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 135/332 (40%), Gaps = 8/332 (2%)

Query: 13   IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
            +Y  LI    + G    A+  F +M   G   +  V  +LI A+     K   L  A   
Sbjct: 966  VYGSLINGFSETGNVEEALCYFRKMDEFGISANQIVLTSLIKAY----SKVGCLEGAKTL 1021

Query: 73   FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            ++ MK +E   P+IV  N ++   A    V +   +F +L +   A D  ++  +M  Y 
Sbjct: 1022 YEGMKDLE-GGPDIVASNSMINLYADLGLVSEAKLIFDDLRQKGSA-DGVSFATMMYLYK 1079

Query: 133  KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
              GM+ E   V   MK +    D  +FN ++  Y          ++   ++  +  P   
Sbjct: 1080 NLGMLDEAIDVADEMKQSGFLRDCASFNKVMACYATNGQLSACGELLHEMISRRILPDTG 1139

Query: 193  TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            TF  M     K  L  +A  V Q  ++ +    +     I +++      + A E  +  
Sbjct: 1140 TFKVMFTVLKKGGLPTEA--VTQLESSYQEGKPYARQAVITSVFSTVGLHAFALESCETF 1197

Query: 253  SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
                 D+  S  N  + AY  +G   +A  +F    + G+ PD  TY  L   Y KA M 
Sbjct: 1198 LNAEVDLDSSFYNVAIYAYGASGSIDKALKMFMKMQDEGLEPDLVTYINLAGCYGKAGML 1257

Query: 313  ELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            E ++++  +++   I PN+  F   ++ + S+
Sbjct: 1258 EGLKRIYSQLKYREIEPNESLFKAIIDAYRSA 1289



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 91/218 (41%), Gaps = 28/218 (12%)

Query: 3    KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
            KQ  ++ D   ++K++A     GQ      L  EM +    PD   +  + T        
Sbjct: 1095 KQSGFLRDCASFNKVMACYATNGQLSACGELLHEMISRRILPDTGTFKVMFTVLKKGGLP 1154

Query: 63   AKALAKALGYFQKMK--------------------GMERCKPNIVT--------YNILLR 94
             +A+ +    +Q+ K                     +E C+  +          YN+ + 
Sbjct: 1155 TEAVTQLESSYQEGKPYARQAVITSVFSTVGLHAFALESCETFLNAEVDLDSSFYNVAIY 1214

Query: 95   ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
            A   + ++D+   +F ++ +  L PD+ TY  +   YGK GM++ ++ + S++K  + +P
Sbjct: 1215 AYGASGSIDKALKMFMKMQDEGLEPDLVTYINLAGCYGKAGMLEGLKRIYSQLKYREIEP 1274

Query: 155  DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
            +   F  +ID+Y   +  D  E V + +  + +   LP
Sbjct: 1275 NESLFKAIIDAYRSAKRHDLAELVSQEMKFAFDTTMLP 1312


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 154/316 (48%), Gaps = 17/316 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  + K G TR A+ L  ++     +P+  +Y+ +I A      K + +++A G F
Sbjct: 167 YATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALC----KYQLVSEAYGLF 222

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  KG+     ++VTY+ L+        + +   L  E+    + P++YTYN ++DA 
Sbjct: 223 SEMTVKGIS---ADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDAL 279

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G +KE +SVL+ M     KPD+IT++ L+D Y       K + VF ++      P +
Sbjct: 280 CKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDV 339

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIF 249
            T+  +I  + K ++  +A  +F++M      P  +TY  +I   G C +  +    ++ 
Sbjct: 340 HTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLID--GLCKSGRIPYVWDLI 397

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE+   G+   V T +++++  C NG    A  LF    +  + P+  T+ +L     K 
Sbjct: 398 DEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKG 457

Query: 310 ----NMKELVQKLLKR 321
               + +E+ Q LL +
Sbjct: 458 GRLKDAQEVFQDLLTK 473



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 144/322 (44%), Gaps = 9/322 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD   YS LI     +G+ + A+ L +EM      P+   YN L+ A L    K K    
Sbjct: 232 ADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDA-LCKEGKVKEAKS 290

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
            L    K       KP+++TY+ L+        V +   +F  +    + PD++TY  ++
Sbjct: 291 VLAVMLK----ACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILI 346

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + + KN M+ E  ++   M      P I+T++ LID   K      +  +   +    + 
Sbjct: 347 NGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQP 406

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAR 246
             + T++S+I    K     +A  +F KM   +  P+  T+   I + G C    +  A+
Sbjct: 407 ADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFT--ILLDGLCKGGRLKDAQ 464

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+F +L   G  + V T N M+  +C  GL  EA  +     + G  P++ T++ +  A 
Sbjct: 465 EVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIAL 524

Query: 307 TKANMKELVQKLLKRMEQNGIV 328
            K +  +  +KLL++M   G++
Sbjct: 525 FKKDENDKAEKLLRQMIARGLL 546



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 125/331 (37%), Gaps = 47/331 (14%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           LI      GQ      + +++   G  PD    N LI   L  + + K   KAL +  K+
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKG-LCLKGQVK---KALHFHDKL 155

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
              +  + N V+Y  L+    +  +      L +++   +  P++  Y+ ++DA  K  +
Sbjct: 156 LA-QGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQL 214

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           + E   + S M       D++T++ LI  +       +   +   ++     P + T+N 
Sbjct: 215 VSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNI 274

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           ++    K     +A+ V   M      P  ITY  ++  Y     V +A+ +F+ +S   
Sbjct: 275 LVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSL-- 332

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
                                            MGVTPD  TY +L   + K  M +   
Sbjct: 333 ---------------------------------MGVTPDVHTYTILINGFCKNKMVDEAL 359

Query: 317 KLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
            L K M Q  +VP        + T+SS + G
Sbjct: 360 NLFKEMHQKNMVP-------GIVTYSSLIDG 383



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 40/181 (22%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R   AD   YS LI  + K G    A+ LF++M++   R                   
Sbjct: 401 RDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIR------------------- 441

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
                                PNI T+ ILL    +   +     +F++L       ++Y
Sbjct: 442 ---------------------PNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVY 480

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN +++ + K G+++E  ++LS+M+ N C P+  TF  +I +  K+   DK E++ + +
Sbjct: 481 TYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQM 540

Query: 183 M 183
           +
Sbjct: 541 I 541



 Score = 38.1 bits (87), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 29/165 (17%), Positives = 62/165 (37%)

Query: 170 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
           Q  D     F  ++  +  P +  FN ++ ++ K +    A  +  ++      P  IT 
Sbjct: 38  QNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITL 97

Query: 230 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289
             +I  + +   ++    +  ++ K G      TLN +++  C+ G   +A    +    
Sbjct: 98  NILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLA 157

Query: 290 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            G   +  +Y  L     K        KLL++++     PN   +
Sbjct: 158 QGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMY 202


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 141/313 (45%), Gaps = 5/313 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L+  +  +G+    M L+ +M   G +P+   YN +I    ++  K+    +ALG+ 
Sbjct: 135 FTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVII----NSLSKSGKANEALGFL 190

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M+ +  C PN+V Y+ L+        +D+  ++F  +      P++YTY  +M+ Y K
Sbjct: 191 KQMEKVG-CVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCK 249

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              I+E   +L         PDI+TF  +I    +       +Q+F+ +      P + T
Sbjct: 250 IERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMT 309

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +  ++    K     +A  +FQ+M      P+ + Y  +I     C  +   +E+F  L 
Sbjct: 310 YGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLI 369

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V T  A++ A C  GL  EA  LF      G TPD   Y ++ + + +     
Sbjct: 370 DEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPS 429

Query: 314 LVQKLLKRMEQNG 326
           + ++L++ M   G
Sbjct: 430 MARQLVEEMVNRG 442



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 141/320 (44%), Gaps = 11/320 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLHTRDKA-KALAKAL 70
           +SKL + + + G     ++L  E+   G   D    + LI    HLH  D     L+K L
Sbjct: 65  FSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSVLSKIL 124

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
                  G+E   P+IVT+  LL        +DQV  L+ ++    L P++YTYN ++++
Sbjct: 125 KL-----GLE---PSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINS 176

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             K+G   E    L +M+   C P+++ ++ LID Y  R   D+   VF  ++     P 
Sbjct: 177 LSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPN 236

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           + T+ S++  Y K     +A  +  +       P  +T+  II+          A+++F 
Sbjct: 237 VYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFR 296

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            +   G    + T   +L+  C +G   EA  LF+      V P+   Y +L  +  K  
Sbjct: 297 YICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCG 356

Query: 311 MKELVQKLLKRMEQNGIVPN 330
             +  ++L  R+   G+ PN
Sbjct: 357 KIKDGKELFSRLIDEGLKPN 376



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 121/251 (48%), Gaps = 4/251 (1%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +PN+ TYN+++ + +++   ++     K++ +    P++  Y+ ++D Y   G + E  S
Sbjct: 164 QPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARS 223

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           V   M S  C P++ T+  L++ Y K +  ++  Q+    +     P + TF ++I    
Sbjct: 224 VFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLC 283

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMK 260
           +A     A+ +F+ + A  +TP+ +TY   + + G C   N+  A  +F E+ +      
Sbjct: 284 RAGRPLAAQQLFRYICAHGHTPNIMTYG--VLLDGLCKHGNLEEAFALFQEMQRSTVKPN 341

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           +     ++++ C  G   +   LF    + G+ P+  TY  L  A  K  +     KL +
Sbjct: 342 LVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFR 401

Query: 321 RMEQNGIVPNK 331
           +ME++G  P+K
Sbjct: 402 KMEEDGCTPDK 412



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 126/272 (46%), Gaps = 10/272 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI     +GQ   A  +F  M + GC P+   Y +L+  +     K + + +A+   
Sbjct: 205 YSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYC----KIERIEEAVQLL 260

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +   KG+    P+IVT+  ++    +A        LF+ +      P+I TY  ++D  
Sbjct: 261 DETLRKGL---VPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGL 317

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K+G ++E  ++   M+ +  KP+++ + +LIDS  K       +++F  L+    KP +
Sbjct: 318 CKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNV 377

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+ +++    K  L  +A  +F+KM     TP    Y  II  +    + S AR++ +E
Sbjct: 378 YTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEE 437

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
           +   G     +T  A+L  +  N +P    L+
Sbjct: 438 MVNRGFSADAAT-RALLNDFPTNDIPALKTLI 468



 Score = 41.2 bits (95), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 5/100 (5%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ LI  + K G+ +    LFS + + G +P+   Y AL+ A      K   + +A   
Sbjct: 344 IYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALC----KEGLIIEAHKL 399

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL 112
           F+KM+  + C P+   YN++++   Q ++      L +E+
Sbjct: 400 FRKMEE-DGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEM 438


>gi|125572530|gb|EAZ14045.1| hypothetical protein OsJ_03970 [Oryza sativa Japonica Group]
          Length = 665

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 154/341 (45%), Gaps = 16/341 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R    D   YS L+A + + G    A+     M +    PD  +++ LI   L   D 
Sbjct: 155 RDRGVAPDAFSYSTLLAALTRAGHLDHALTFLPLMEDDAVAPDLVLFSNLIHLALRGGDA 214

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDI 121
            KALA     F +++G    KP++  YN  + A C      D    L  ++    +APD 
Sbjct: 215 PKALA----LFSRLRGAAGIKPDLKAYNAAIAAYCKSDLLRDANRLLLHDMPSDGVAPDA 270

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            +Y+ ++ A  + G      S+ + M++  + KPD+  FN+++++YG+     + +++F 
Sbjct: 271 ESYSPILAALARRGRHLAAVSLFTHMRAVARVKPDLSVFNIVLNAYGQLDLAREADRLFW 330

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK----------YTPSFITYE 230
           S+  +   P++ T+N+M+  YG A L G+A ++F  M +              P+ +TY 
Sbjct: 331 SMRRAGVAPSVVTYNTMLRVYGDAGLFGEAVHLFGLMRSAASDGSDRGGSVIKPNVVTYN 390

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
            +I +YG      +A  +  ++   G      T + +L  +   G    A  LFE     
Sbjct: 391 TMIAIYGKSLEDEKAGSLVQDMQANGIQPNAITYSTILSIWVKAGKLDRAGKLFEKLREA 450

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           G   D   Y+ +  AY +A +    ++LL  ++ +  VP +
Sbjct: 451 GTEIDPVLYQTMVVAYERAGLVSQSKRLLHDLKDSEDVPKE 491



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 165/369 (44%), Gaps = 57/369 (15%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-GCRPDPSVYNALITAHLHT---RDKAKA 65
           D  ++S LI +  + G    A+ LFS +R + G +PD   YNA I A+  +   RD  + 
Sbjct: 197 DLVLFSNLIHLALRGGDAPKALALFSRLRGAAGIKPDLKAYNAAIAAYCKSDLLRDANRL 256

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHE-SILAPDIYT 123
           L         M   +   P+  +Y+ +L A A+  R++  V+ LF  +   + + PD+  
Sbjct: 257 L------LHDMPS-DGVAPDAESYSPILAALARRGRHLAAVS-LFTHMRAVARVKPDLSV 308

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           +N V++AYG+  + +E + +   M+     P ++T+N ++  YG    F +   +F  LM
Sbjct: 309 FNIVLNAYGQLDLAREADRLFWSMRRAGVAPSVVTYNTMLRVYGDAGLFGEAVHLF-GLM 367

Query: 184 HSKE-----------KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 232
            S             KP + T+N+MI  YGK+    KA  + Q M A    P+ ITY  I
Sbjct: 368 RSAASDGSDRGGSVIKPNVVTYNTMIAIYGKSLEDEKAGSLVQDMQANGIQPNAITYSTI 427

Query: 233 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT-------------- 278
           ++++     + RA ++F++L + G ++       M+ AY   GL +              
Sbjct: 428 LSIWVKAGKLDRAGKLFEKLREAGTEIDPVLYQTMVVAYERAGLVSQSKRLLHDLKDSED 487

Query: 279 -----------------EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
                            EA  LF  + + G   D+S Y+++   + K+     V ++   
Sbjct: 488 VPKETAIKILANAGRVEEAAWLFRRAADAGDVRDTSVYRMMIDLFAKSRRHRSVIEVFDE 547

Query: 322 MEQNGIVPN 330
           M + G +P+
Sbjct: 548 MRKAGSLPD 556



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 118/293 (40%), Gaps = 48/293 (16%)

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           ++ YN+LLR+  +   +   + L  E+ +  +APD ++Y+ ++ A  + G +    + L 
Sbjct: 128 LIPYNLLLRSACRPGMLRLASGLLLEMRDRGVAPDAFSYSTLLAALTRAGHLDHALTFLP 187

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKA 204
            M+ +   PD++ F+ LI    +     K   +F  L  +   KP L  +N+ I  Y K+
Sbjct: 188 LMEDDAVAPDLVLFSNLIHLALRGGDAPKALALFSRLRGAAGIKPDLKAYNAAIAAYCKS 247

Query: 205 RL---------------------------------QGK---AEYVFQKMTAM-KYTPSFI 227
            L                                 +G+   A  +F  M A+ +  P   
Sbjct: 248 DLLRDANRLLLHDMPSDGVAPDAESYSPILAALARRGRHLAAVSLFTHMRAVARVKPDLS 307

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF--- 284
            +  ++  YG  D    A  +F  + + G    V T N ML  Y   GL  EA  LF   
Sbjct: 308 VFNIVLNAYGQLDLAREADRLFWSMRRAGVAPSVVTYNTMLRVYGDAGLFGEAVHLFGLM 367

Query: 285 -----ENSHNMG--VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                + S   G  + P+  TY  +   Y K+   E    L++ M+ NGI PN
Sbjct: 368 RSAASDGSDRGGSVIKPNVVTYNTMIAIYGKSLEDEKAGSLVQDMQANGIQPN 420



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 80/169 (47%), Gaps = 9/169 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS ++++  K G+   A  LF ++R +G   DP +Y  ++ A+    ++A  ++++    
Sbjct: 424 YSTILSIWVKAGKLDRAGKLFEKLREAGTEIDPVLYQTMVVAY----ERAGLVSQSKRLL 479

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             +K  E   P      IL    A A  V++   LF+   ++    D   Y  ++D + K
Sbjct: 480 HDLKDSEDV-PKETAIKIL----ANAGRVEEAAWLFRRAADAGDVRDTSVYRMMIDLFAK 534

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +   + +  V   M+     PD  T  + ++++GK + FDK   +++++
Sbjct: 535 SRRHRSVIEVFDEMRKAGSLPDSETIAITMNAHGKLKEFDKAAALYRAM 583



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 52/259 (20%), Positives = 102/259 (39%), Gaps = 52/259 (20%)

Query: 6   WYIADTGI------YSKLIAVMGKKGQTRLAMWLFSEMRNSG----------CRPDPSVY 49
           W +   G+      Y+ ++ V G  G    A+ LF  MR++            +P+   Y
Sbjct: 330 WSMRRAGVAPSVVTYNTMLRVYGDAGLFGEAVHLFGLMRSAASDGSDRGGSVIKPNVVTY 389

Query: 50  NALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALF 109
           N +I  +     K+    KA    Q M+     +PN +TY+ +L    +A  +D+   LF
Sbjct: 390 NTMIAIY----GKSLEDEKAGSLVQDMQA-NGIQPNAITYSTILSIWVKAGKLDRAGKLF 444

Query: 110 KELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP--------------- 154
           ++L E+    D   Y  ++ AY + G++ + + +L  +K ++  P               
Sbjct: 445 EKLREAGTEIDPVLYQTMVVAYERAGLVSQSKRLLHDLKDSEDVPKETAIKILANAGRVE 504

Query: 155 ----------------DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 198
                           D   + ++ID + K +    + +VF  +  +   P   T    +
Sbjct: 505 EAAWLFRRAADAGDVRDTSVYRMMIDLFAKSRRHRSVIEVFDEMRKAGSLPDSETIAITM 564

Query: 199 INYGKARLQGKAEYVFQKM 217
             +GK +   KA  +++ M
Sbjct: 565 NAHGKLKEFDKAAALYRAM 583


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 145/340 (42%), Gaps = 21/340 (6%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           +I DT  YSK+I ++    +   A  LF EM+++   PD   Y  LI +      K   L
Sbjct: 476 FIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFC----KVGLL 531

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            +A  +F +M   + C PN+VTY  L+ A  +AR +   N LF+ +      P++ TY  
Sbjct: 532 QQARKWFDEMV-RDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTA 590

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPD----------------IITFNLLIDSYGKRQ 170
           ++D + K+G I++   + +RM+ N   PD                I T+  L+D   K  
Sbjct: 591 LIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAH 650

Query: 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
              +   +   +     +P    ++++I  + K     +A+ VF KM+   Y P+  TY 
Sbjct: 651 KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
            +I        +  A ++   + +      V     M++  C  G   EA  L       
Sbjct: 711 SLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEK 770

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           G  P+  TY  +   + KA   +   +L+++M   G  PN
Sbjct: 771 GCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPN 810



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 160/380 (42%), Gaps = 54/380 (14%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI------------------- 53
           I++ LI    + G    A  L  +M + GC+P   VYN LI                   
Sbjct: 371 IFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAE 430

Query: 54  -------TAHL-----HTRDKAKALAKALGYFQKMKGMER------CKPNIVTYNILLRA 95
                   AH+     +  + A+ L  A G F+K   + R        P+  TY+ ++  
Sbjct: 431 KAYGEMLDAHVVLNKVNVSNLARCLCGA-GKFEKAYSIIREMMSKGFIPDTSTYSKVIGL 489

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
              A  VD    LF+E+  + + PD++TY  ++D++ K G++++       M  + C P+
Sbjct: 490 LCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPN 549

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK-----------A 204
           ++T+  LI +Y K +      ++F+ ++     P + T+ ++I  + K           A
Sbjct: 550 VVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYA 609

Query: 205 RLQGKAEY-----VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
           R++G A+       F+        P+  TY  ++        V  AR++ D +S  G + 
Sbjct: 610 RMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEP 669

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
                +A+++ +C  G   EA ++F      G  P+  TY  L     K    +L  K+L
Sbjct: 670 NHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVL 729

Query: 320 KRMEQNGIVPNKRFFLEALE 339
            RM +N   PN   + E ++
Sbjct: 730 SRMLENSCAPNVIIYTEMID 749



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 144/338 (42%), Gaps = 21/338 (6%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K    + D   Y+ LI    K G  + A   F EM   GC P+   Y ALI A+L    K
Sbjct: 507 KSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYL----K 562

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILL----------RAC---AQAR---NVDQVN 106
           A+ ++ A   F+ M   E C PN+VTY  L+          +AC   A+ R   ++  V+
Sbjct: 563 ARKMSSANELFEMMLS-EGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVD 621

Query: 107 ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
             FK    +I  P+I+TY  ++D   K   +KE   +L  M    C+P+ I ++ LID +
Sbjct: 622 MYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGF 681

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
            K    D+ + VF  +      P + T++S+I    K +    A  V  +M      P+ 
Sbjct: 682 CKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNV 741

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           I Y  +I           A  +   + + G    V T  AM++ +   G   +   L   
Sbjct: 742 IIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQ 801

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
               G  P+  TY++L      A + +   +LL  M+Q
Sbjct: 802 MGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQ 839



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 145/326 (44%), Gaps = 13/326 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD--KAKA 65
           I +   Y+ LI    K GQ   A  +++ MR +   PD  +Y  +   ++   +     A
Sbjct: 582 IPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGA 641

Query: 66  LAKALGYFQKMK---------GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
           L   L    K+K          +E C+PN + Y+ L+    +   +D+   +F ++ E  
Sbjct: 642 LVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERG 701

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
             P++YTY+ ++D   K+  +     VLSRM  N C P++I +  +ID   K    D+  
Sbjct: 702 YGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAY 761

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           ++   +      P + T+ +MI  +GKA    K   + ++M A    P+F+TY  +I   
Sbjct: 762 RLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHC 821

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                +  A ++ DE+ +      ++    ++E +          LL E + N+ V P  
Sbjct: 822 CAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGF-NREFIISLGLLDEIAENVAV-PII 879

Query: 297 STYKLLYKAYTKANMKELVQKLLKRM 322
             Y++L  ++ KA   EL  +L K M
Sbjct: 880 PAYRILIDSFCKAGRLELALELHKEM 905



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/355 (21%), Positives = 141/355 (39%), Gaps = 49/355 (13%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
            + ++ K G+ R A+ L  +      + D  +Y  +I+       +A    +A+ +  +M
Sbjct: 273 FVHLLCKAGRWREALALIEKEEF---KLDTVIYTQMISGLC----EASLFEEAMDFLSRM 325

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +    C PN+VTY ILL  C + R + +   +   +      P    +N ++ AY ++G 
Sbjct: 326 RS-SSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGD 384

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLID-------------------SYGK--------- 168
                 +L +M    C+P  + +N+LI                    +YG+         
Sbjct: 385 YSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLN 444

Query: 169 -------------RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
                           F+K   + + +M     P   T++ +I     A     A  +F+
Sbjct: 445 KVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFE 504

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
           +M +    P   TY  +I  +     + +AR+ FDE+ + G    V T  A++ AY    
Sbjct: 505 EMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKAR 564

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             + A+ LFE   + G  P+  TY  L   + K+   E   ++  RM  N  +P+
Sbjct: 565 KMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPD 619



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/369 (19%), Positives = 147/369 (39%), Gaps = 47/369 (12%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y  L+ V+G  G  R+      E+R+     D  +   L+   +    +      AL  
Sbjct: 164 VYHALLEVLGCGGNDRVPEQFLREIRDE----DKEILGKLLNVLIRKCCRNGLWNVALEE 219

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT--------- 123
             ++K +   KP+ +TYN L+R   +A  +D    + +E+ +S    D YT         
Sbjct: 220 LGRLKDLGY-KPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLC 278

Query: 124 -----------------------YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
                                  Y  ++    +  + +E    LSRM+S+ C P+++T+ 
Sbjct: 279 KAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYR 338

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
           +L+    +++   + +++   ++     P+   FNS+I  Y ++     A  + +KM   
Sbjct: 339 ILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDC 398

Query: 221 KYTPSFITYECIITMYGYCDN--------VSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
              P ++ Y  +I   G C N        +  A + + E+      +    ++ +    C
Sbjct: 399 GCQPGYVVYNILIG--GICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLC 456

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             G   +A  +     + G  PD+STY  +      A+  +    L + M+ N +VP+  
Sbjct: 457 GAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVF 516

Query: 333 FFLEALETF 341
            +   +++F
Sbjct: 517 TYTILIDSF 525


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 148/317 (46%), Gaps = 17/317 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G+TR A+ L   +     + +  +YN +I        K K +  A   +
Sbjct: 176 YGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDG----MSKDKHVNDAFDLY 231

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   +R  P++VTY+ L+R       +     LF ++    + PD+YT+N ++D + K
Sbjct: 232 SEMVA-KRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCK 290

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +K+ ++VL  M     KP++ TFN L+D + K +   + + VF  +M    KP + T
Sbjct: 291 EGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVT 350

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + S++  Y   +   KA+ +F  M+    T +  +Y  +I  +     V +A ++F E+ 
Sbjct: 351 YCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMH 410

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
                  V T N++++  C +G  + A  L    H+ G  P+  TY              
Sbjct: 411 HKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITY------------NS 458

Query: 314 LVQKLLKRMEQNGIVPN 330
           ++  LL +++  GI PN
Sbjct: 459 ILNALLTKLKDQGIQPN 475



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 140/307 (45%), Gaps = 5/307 (1%)

Query: 24  KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK 83
           KGQ   A+    ++   G   D   Y  LI        K      AL   +++ G +  +
Sbjct: 151 KGQIHQALNFHDKLVALGFHLDQVSYGTLINGLC----KVGETRAALQLLRRVDG-KLVQ 205

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
            N V YN ++   ++ ++V+    L+ E+    ++PD+ TY+ ++  +   G +K+   +
Sbjct: 206 LNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDL 265

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
            ++M     KPD+ TFN+L+D + K     K + V   +M    KP + TFN+++  + K
Sbjct: 266 FNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCK 325

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
            R   + + VF  M      P+ +TY  ++  Y     V++A++IF+ +S+ G    V +
Sbjct: 326 DRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHS 385

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N M+  +C      +A  LF   H+  + PD  TY  L     K+       +L+  M 
Sbjct: 386 YNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMH 445

Query: 324 QNGIVPN 330
             G  PN
Sbjct: 446 DRGQPPN 452



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 145/313 (46%), Gaps = 23/313 (7%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ +I  M K      A  L+SEM      PD   Y+ALI            L  A+  
Sbjct: 210 MYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFF----IVGKLKDAIDL 265

Query: 73  FQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           F KM  +E  KP++ T+NIL+   C + R     N L   + + I  P++ T+N ++D +
Sbjct: 266 FNKMI-LENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDI-KPNVSTFNTLVDGF 323

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K+  +KE ++V + M     KP+++T+  L+D Y   +  +K +++F ++        +
Sbjct: 324 CKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANV 383

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIF 249
            ++N MI  + K +   KA  +F +M      P  +TY  +I   G C +  +S A ++ 
Sbjct: 384 HSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLID--GLCKSGKISYAFQLV 441

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +E+   G+   + T N++L A            L     + G+ P+  T  +L K   ++
Sbjct: 442 NEMHDRGQPPNIITYNSILNA------------LLTKLKDQGIQPNMHTDTILIKGLCQS 489

Query: 310 NMKELVQKLLKRM 322
              E  +K+ + +
Sbjct: 490 GKLEAARKVFEDL 502



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 105/227 (46%), Gaps = 11/227 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI      G+ + A+ LF++M     +PD   +N L+        K   L KA
Sbjct: 242 DVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFC----KEGRLKKA 297

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                 M  ++  KPN+ T+N L+    + R + +   +F  + +  + P++ TY  +MD
Sbjct: 298 KNVLDMMM-IQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMD 356

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y     + + + + + M       ++ ++N++I+ + K +  DK  ++F  + H    P
Sbjct: 357 GYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIP 416

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECII 233
            + T+NS+I    K+   GK  Y FQ +  M      P+ ITY  I+
Sbjct: 417 DVVTYNSLIDGLCKS---GKISYAFQLVNEMHDRGQPPNIITYNSIL 460



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/331 (20%), Positives = 131/331 (39%), Gaps = 44/331 (13%)

Query: 39  NSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
           NS    +P++        L +  K+K     L   Q+M+  E   PN VT+NIL+    Q
Sbjct: 57  NSLLHQNPTLTAFEFNKILGSLVKSKHYHTVLSLSQQME-FEGINPNFVTFNILINCFCQ 115

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMD----------------------------A 130
              +    ++  ++ +    PDI T N  +                             +
Sbjct: 116 LGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVS 175

Query: 131 YGK--NGMIKEMES-----VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YG   NG+ K  E+     +L R+     + + + +N +ID   K +  +    ++  ++
Sbjct: 176 YGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMV 235

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN-- 241
             +  P + T++++I  +        A  +F KM      P   T+  ++   G+C    
Sbjct: 236 AKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVD--GFCKEGR 293

Query: 242 VSRAREIFDELSKLGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           + +A+ + D +  + +D+K  VST N +++ +C +    E   +F      G+ P+  TY
Sbjct: 294 LKKAKNVLDMM--MIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTY 351

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             L   Y         +K+   M Q G+  N
Sbjct: 352 CSLMDGYCLVKQVNKAKKIFNTMSQRGVTAN 382



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 65/151 (43%)

Query: 173 DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 232
           D    +F SL+H     T   FN ++ +  K++       + Q+M      P+F+T+  +
Sbjct: 50  DGAVSLFNSLLHQNPTLTAFEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPNFVTFNIL 109

Query: 233 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV 292
           I  +     +  A  +  ++ K+G +  + TLN  ++ +C+ G   +A    +    +G 
Sbjct: 110 INCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVALGF 169

Query: 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
             D  +Y  L     K        +LL+R++
Sbjct: 170 HLDQVSYGTLINGLCKVGETRAALQLLRRVD 200



 Score = 41.6 bits (96), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 42/214 (19%), Positives = 89/214 (41%), Gaps = 10/214 (4%)

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
            + +VD   +LF  L         + +N ++ +  K+     + S+  +M+     P+ +
Sbjct: 45  HSNDVDGAVSLFNSLLHQNPTLTAFEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPNFV 104

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           TFN+LI+ + +         V   ++    +P + T N+ I  +       +A     K+
Sbjct: 105 TFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKL 164

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
            A+ +    ++Y  +I   G C  V   R     L ++  D K+  LNA++    ++G+ 
Sbjct: 165 VALGFHLDQVSYGTLIN--GLC-KVGETRAALQLLRRV--DGKLVQLNAVMYNTVIDGMS 219

Query: 278 TEADL-----LFENSHNMGVTPDSSTYKLLYKAY 306
            +  +     L+       ++PD  TY  L + +
Sbjct: 220 KDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGF 253


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 145/340 (42%), Gaps = 21/340 (6%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           +I DT  YSK+I ++    +   A  LF EM+++   PD   Y  LI +      K   L
Sbjct: 476 FIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFC----KVGLL 531

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            +A  +F +M   + C PN+VTY  L+ A  +AR +   N LF+ +      P++ TY  
Sbjct: 532 QQARKWFDEMV-RDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTA 590

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPD----------------IITFNLLIDSYGKRQ 170
           ++D + K+G I++   + +RM+ N   PD                I T+  L+D   K  
Sbjct: 591 LIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAH 650

Query: 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
              +   +   +     +P    ++++I  + K     +A+ VF KM+   Y P+  TY 
Sbjct: 651 KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
            +I        +  A ++   + +      V     M++  C  G   EA  L       
Sbjct: 711 SLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEK 770

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           G  P+  TY  +   + KA   +   +L+++M   G  PN
Sbjct: 771 GCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPN 810



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 160/380 (42%), Gaps = 54/380 (14%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI------------------- 53
           I++ LI    + G    A  L  +M + GC+P   VYN LI                   
Sbjct: 371 IFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAE 430

Query: 54  -------TAHL-----HTRDKAKALAKALGYFQKMKGMER------CKPNIVTYNILLRA 95
                   AH+     +  + A+ L  A G F+K   + R        P+  TY+ ++  
Sbjct: 431 KAYGEMLDAHVVLNKVNVSNLARCLCGA-GKFEKAYSIIREMMSKGFIPDTSTYSKVIGL 489

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
              A  VD    LF+E+  + + PD++TY  ++D++ K G++++       M  + C P+
Sbjct: 490 LCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPN 549

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK-----------A 204
           ++T+  LI +Y K +      ++F+ ++     P + T+ ++I  + K           A
Sbjct: 550 VVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYA 609

Query: 205 RLQGKAEY-----VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
           R++G A+       F+        P+  TY  ++        V  AR++ D +S  G + 
Sbjct: 610 RMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEP 669

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
                +A+++ +C  G   EA ++F      G  P+  TY  L     K    +L  K+L
Sbjct: 670 NHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVL 729

Query: 320 KRMEQNGIVPNKRFFLEALE 339
            RM +N   PN   + E ++
Sbjct: 730 SRMLENSCAPNVIIYTEMID 749



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 144/338 (42%), Gaps = 21/338 (6%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K    + D   Y+ LI    K G  + A   F EM   GC P+   Y ALI A+L    K
Sbjct: 507 KSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYL----K 562

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILL----------RAC---AQAR---NVDQVN 106
           A+ ++ A   F+ M   E C PN+VTY  L+          +AC   A+ R   ++  V+
Sbjct: 563 ARKMSSANELFEMMLS-EGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVD 621

Query: 107 ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
             FK    +I  P+I+TY  ++D   K   +KE   +L  M    C+P+ I ++ LID +
Sbjct: 622 MYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGF 681

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
            K    D+ + VF  +      P + T++S+I    K +    A  V  +M      P+ 
Sbjct: 682 CKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNV 741

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           I Y  +I           A  +   + + G    V T  AM++ +   G   +   L   
Sbjct: 742 IIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQ 801

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
               G  P+  TY++L      A + +   +LL  M+Q
Sbjct: 802 MGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQ 839



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 145/326 (44%), Gaps = 13/326 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD--KAKA 65
           I +   Y+ LI    K GQ   A  +++ MR +   PD  +Y  +   ++   +     A
Sbjct: 582 IPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGA 641

Query: 66  LAKALGYFQKMK---------GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
           L   L    K+K          +E C+PN + Y+ L+    +   +D+   +F ++ E  
Sbjct: 642 LVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERG 701

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
             P++YTY+ ++D   K+  +     VLSRM  N C P++I +  +ID   K    D+  
Sbjct: 702 YGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAY 761

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           ++   +      P + T+ +MI  +GKA    K   + ++M A    P+F+TY  +I   
Sbjct: 762 RLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHC 821

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                +  A ++ DE+ +      ++    ++E +          LL E + N+ V P  
Sbjct: 822 CAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGF-NREFIISLGLLDEIAENVAV-PII 879

Query: 297 STYKLLYKAYTKANMKELVQKLLKRM 322
             Y++L  ++ KA   EL  +L K M
Sbjct: 880 PAYRILIDSFCKAGRLELALELHKXM 905



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/355 (21%), Positives = 141/355 (39%), Gaps = 49/355 (13%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
            + ++ K G+ R A+ L  +      + D  +Y  +I+       +A    +A+ +  +M
Sbjct: 273 FVHLLCKAGRWREALALIEKEEF---KLDTVIYTQMISGLC----EASLFEEAMDFLSRM 325

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +    C PN+VTY ILL  C + R + +   +   +      P    +N ++ AY ++G 
Sbjct: 326 RS-SSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGD 384

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLID-------------------SYGK--------- 168
                 +L +M    C+P  + +N+LI                    +YG+         
Sbjct: 385 YSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLN 444

Query: 169 -------------RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
                           F+K   + + +M     P   T++ +I     A     A  +F+
Sbjct: 445 KVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFE 504

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
           +M +    P   TY  +I  +     + +AR+ FDE+ + G    V T  A++ AY    
Sbjct: 505 EMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKAR 564

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             + A+ LFE   + G  P+  TY  L   + K+   E   ++  RM  N  +P+
Sbjct: 565 KMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPD 619



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/369 (19%), Positives = 147/369 (39%), Gaps = 47/369 (12%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y  L+ V+G  G  R+      E+R+     D  +   L+   +    +      AL  
Sbjct: 164 VYHALLEVLGCGGNDRVPEQFLREIRDE----DKEILGKLLNVLIRKCCRNGLWNVALEE 219

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT--------- 123
             ++K +   KP+ +TYN L+R   +A  +D    + +E+ +S    D YT         
Sbjct: 220 LGRLKDLGY-KPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLC 278

Query: 124 -----------------------YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
                                  Y  ++    +  + +E    LSRM+S+ C P+++T+ 
Sbjct: 279 KAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYR 338

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
           +L+    +++   + +++   ++     P+   FNS+I  Y ++     A  + +KM   
Sbjct: 339 ILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDC 398

Query: 221 KYTPSFITYECIITMYGYCDN--------VSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
              P ++ Y  +I   G C N        +  A + + E+      +    ++ +    C
Sbjct: 399 GCQPGYVVYNILIG--GICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLC 456

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             G   +A  +     + G  PD+STY  +      A+  +    L + M+ N +VP+  
Sbjct: 457 GAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVF 516

Query: 333 FFLEALETF 341
            +   +++F
Sbjct: 517 TYTILIDSF 525


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 157/384 (40%), Gaps = 51/384 (13%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R YI D   Y+ LI  +  + +   A  LF  M+  GC P+   Y  LI     T +  
Sbjct: 154 RRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGN-- 211

Query: 64  KALAKALGYFQKM-KGME----RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
             +  AL   Q+M  G       CKPNI +YNI++    +     +   LF E+ +  + 
Sbjct: 212 --INLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVR 269

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD+ T++ ++D   K GM+ E +  L  M      PD+ TF  LI+ +      D  +++
Sbjct: 270 PDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKEL 329

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT---------- 228
           F S+     +P + ++  +I  Y K     +A  ++ +M  +   P   T          
Sbjct: 330 FLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFL 389

Query: 229 -----------------------YECIITMYGYCDN--VSRAREIFDELSKLGKDMKVST 263
                                  Y C + + G C N  +  A E+F+EL      + + +
Sbjct: 390 AGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIES 449

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N +++  C       A  LFE     G+ PD  TY ++   + K    +    L + ME
Sbjct: 450 FNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMME 509

Query: 324 QNGIVPNKRFFLEALETFSSSLAG 347
           +NG  PN       L T+S+ L G
Sbjct: 510 ENGCTPN-------LLTYSALLHG 526



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 113/252 (44%), Gaps = 6/252 (2%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           +I+++N+LL A A+ ++  QV +L+K++H + L+P+ +T N +++       ++E  S +
Sbjct: 90  SIISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAM 149

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
           + +      PD++T+  LI          +  ++F  +      P + T+ ++I    + 
Sbjct: 150 AGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRT 209

Query: 205 RLQGKAEYVFQKMT------AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 258
                A  + Q+M       A+   P+  +Y  II           A+ +F+E+   G  
Sbjct: 210 GNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVR 269

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
             V T +A+++  C  G+  EA    E     G+ PD  T+  L + +      +  ++L
Sbjct: 270 PDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKEL 329

Query: 319 LKRMEQNGIVPN 330
              M   G  P+
Sbjct: 330 FLSMPSKGYEPD 341



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 124/318 (38%), Gaps = 40/318 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   +S LI  + K+G    A      M   G  PD   + +LI       D   A  K 
Sbjct: 271 DVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSA--KE 328

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L      KG E   P++++Y +L+    +  NV++   L+ E+      PD+ T+  ++ 
Sbjct: 329 LFLSMPSKGYE---PDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLK 385

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
                G + + + +   +K +    ++   ++ +D   K     +  ++F  L     K 
Sbjct: 386 GLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKL 445

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + +FN +I    KAR    A  +F+K++     P  +TY CI+                
Sbjct: 446 DIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTY-CIM---------------- 488

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
                             +  +C NG    A++LF+     G TP+  TY  L   + K 
Sbjct: 489 ------------------INGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKN 530

Query: 310 NMKELVQKLLKRMEQNGI 327
           N  E V KLL +M Q  +
Sbjct: 531 NKLEEVVKLLHKMIQKDV 548



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 112/251 (44%), Gaps = 8/251 (3%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R  + D   ++ LI      G    A  LF  M + G  PD   Y  LI  +  T +   
Sbjct: 301 RGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFN--- 357

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            + +A+  + +M  + +  P++ T+ +LL+    A  V     LF  +    +  ++Y  
Sbjct: 358 -VEEAMKLYNEMLRVGK-WPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYIC 415

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           +  +D   KNG + E   + + +KS   K DI +FN LID   K +  +   ++F+ L  
Sbjct: 416 SVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQ 475

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
              +P + T+  MI  + K      A  +FQ M     TP+ +TY  +  ++G+  N ++
Sbjct: 476 EGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSAL--LHGFYKN-NK 532

Query: 245 AREIFDELSKL 255
             E+   L K+
Sbjct: 533 LEEVVKLLHKM 543



 Score = 38.1 bits (87), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 19/144 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALA 67
           D   ++ LI  + K  +   A  LF ++   G +PD   Y  +I         D A  L 
Sbjct: 446 DIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANIL- 504

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI-----LAPDIY 122
                FQ M+    C PN++TY+ LL    +   +++V    K LH+ I     LA  IY
Sbjct: 505 -----FQMMEE-NGCTPNLLTYSALLHGFYKNNKLEEV---VKLLHKMIQKDVSLAASIY 555

Query: 123 TYNGVMDAYGKNGMIKEMESVLSR 146
           T   V D   K+   +E   +L R
Sbjct: 556 TI--VEDMVSKDEKCREWLDILQR 577


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 150/355 (42%), Gaps = 46/355 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  +  +G  + A+ +  +MR +GC P+   YN L+ A     +   A        
Sbjct: 153 YNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGA-------- 204

Query: 74  QKMKGM---ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           +++ GM      KPN+VT+N ++    +A  ++    +F E+    LAPD  +YN ++  
Sbjct: 205 ERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGG 264

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITF-----------NL------------------ 161
           Y K G   E  SV + M      PD++TF           NL                  
Sbjct: 265 YCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMN 324

Query: 162 ------LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
                 LID + K+   D      + +   + KP++  +N++I  Y       +A  +  
Sbjct: 325 EVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLH 384

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
           +M A    P  +TY  II+ Y    +   A E+  ++ + G      T ++++   C   
Sbjct: 385 EMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEK 444

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             ++A +LF+N   +G+ PD  TY  L   + K    E    L  +M + G++P+
Sbjct: 445 RLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPD 499



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 130/287 (45%), Gaps = 8/287 (2%)

Query: 46  PSV--YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD 103
           PSV  YNA++ A         +L  A  +F  M   +   PN+ TYNIL+RA     +  
Sbjct: 114 PSVLAYNAVLLAL-----SDASLTSARRFFDSMLS-DGVAPNVYTYNILIRALCGRGHRK 167

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +  ++ +++  +   P++ TYN ++ A+ + G +   E ++  M     KP+++TFN ++
Sbjct: 168 EALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMV 227

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           +   K    +   +VF  +M     P   ++N+++  Y KA    +A  VF +MT     
Sbjct: 228 NGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIM 287

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
           P  +T+  +I +     N+  A  +  ++ + G  M   T  A+++ +C  G   +A L 
Sbjct: 288 PDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLA 347

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                   + P    Y  L   Y      +  ++LL  ME  G+ P+
Sbjct: 348 VRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPD 394



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 149/346 (43%), Gaps = 28/346 (8%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           Q+  + D   ++ LI VM K G    A+ L  +MR  G + +   + ALI        K 
Sbjct: 283 QKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFC----KK 338

Query: 64  KALAKALGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             L  AL     ++GM +C  KP++V YN L+        +D+   L  E+    L PD+
Sbjct: 339 GFLDDAL---LAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDV 395

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TY+ ++ AY KN        +  +M      PD IT++ LI    + +       +FK+
Sbjct: 396 VTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKN 455

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++    +P   T+ S+I  + K     +A  +  KM      P  +TY  +I        
Sbjct: 456 MIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSAR 515

Query: 242 VSRAREI---------------FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
              A+++               +D L    +  ++ ++ A+L+ +CM GL  EAD ++++
Sbjct: 516 AMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQS 575

Query: 287 SHNMGVTPDSSTYKLLYKAYTKAN--MKELVQKLLKRMEQNGIVPN 330
             +     D S Y +L   + +A   MK L     K+M Q G  PN
Sbjct: 576 MLDRNWNLDGSVYSVLIHGHCRAGNVMKAL--SFHKQMLQRGFAPN 619



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 143/318 (44%), Gaps = 9/318 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ ++  M K G+   A  +F EM   G  PD   YN L+  +     KA    +AL  F
Sbjct: 223 FNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYC----KAGCSHEALSVF 278

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  KG+    P++VT+  L+    +A N++    L +++ E  L  +  T+  ++D +
Sbjct: 279 AEMTQKGI---MPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGF 335

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G + +    +  M+  + KP ++ +N LI+ Y      D+  ++   +     KP +
Sbjct: 336 CKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDV 395

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T++++I  Y K      A  + Q+M      P  ITY  +I +      +S A  +F  
Sbjct: 396 VTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKN 455

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + KLG      T  ++++ +C  G    A  L +     GV PD  TY +L    +K+  
Sbjct: 456 MIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSAR 515

Query: 312 KELVQKLLKRMEQNGIVP 329
               Q+LL ++     +P
Sbjct: 516 AMEAQQLLFKLYHEEPIP 533



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 113/258 (43%), Gaps = 36/258 (13%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+++ YN +L A + A ++      F  +    +AP++YTYN ++ A    G  KE  S+
Sbjct: 114 PSVLAYNAVLLALSDA-SLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSI 172

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L  M+   C P+++T+N L+ ++ +    D  E++   ++    KP L TFNSM+    K
Sbjct: 173 LRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCK 232

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A   GK E                                 AR++FDE+ + G      +
Sbjct: 233 A---GKME--------------------------------DARKVFDEMMREGLAPDGVS 257

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N ++  YC  G   EA  +F      G+ PD  T+  L     KA   E    L+++M 
Sbjct: 258 YNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMR 317

Query: 324 QNGIVPNKRFFLEALETF 341
           + G+  N+  F   ++ F
Sbjct: 318 ERGLQMNEVTFTALIDGF 335



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 150/338 (44%), Gaps = 28/338 (8%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI      G+   A  L  EM   G +PD   Y+ +I+A+    D   A        
Sbjct: 363 YNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFE----LN 418

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           Q+M  KG+    P+ +TY+ L+R   + + +   + LFK + +  L PD +TY  ++D +
Sbjct: 419 QQMLEKGV---LPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGH 475

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-QAFDKMEQVFK---------- 180
            K G ++   S+  +M      PD++T+++LI+   K  +A +  + +FK          
Sbjct: 476 CKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPAN 535

Query: 181 ----SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
               +LMH   K  L +  +++  +    L  +A+ V+Q M    +      Y  +I  +
Sbjct: 536 TKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLI--H 593

Query: 237 GYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
           G+C   NV +A     ++ + G     ++  +++     NG+  EAD + +   N     
Sbjct: 594 GHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNCCSLA 653

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
           D+   K L          + V  +L  M ++G++P+ R
Sbjct: 654 DAEASKALIDLNLNEGNVDAVLDVLHGMAKDGLLPSPR 691


>gi|410110075|gb|AFV61117.1| pentatricopeptide repeat-containing protein 123, partial
           [Burroughsia fastigiata]
          Length = 348

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 125/256 (48%), Gaps = 5/256 (1%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ +FS +++SG  PD   YN +I        KAK   +A     +MK      PN  +Y
Sbjct: 6   AISIFSRLKSSGYXPDLVAYNTMIIVF----GKAKLFREARSLISEMK-TAGVTPNTTSY 60

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           + LL    + +   +  ++F E+ E     D+ T N ++D YG+ GM KE + +   M+ 
Sbjct: 61  STLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 120

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
              +P+++++N L+  YG  + F +   +F+ +     +  + T+NSMI+ YGK     K
Sbjct: 121 MGIEPNVVSYNTLVRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEK 180

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  + Q+M +    P+ ITY  II+++G    + RA  +F +L   G ++       M+ 
Sbjct: 181 ANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIV 240

Query: 270 AYCMNGLPTEADLLFE 285
           AY   GL   A  L  
Sbjct: 241 AYERAGLVAHAKRLLH 256



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 129/263 (49%), Gaps = 1/263 (0%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +KA+  F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  +Y+ 
Sbjct: 4   SKAISIFSRLKS-SGYXPDLVAYNTMIIVFGKAKLFREARSLISEMKTAGVTPNTTSYST 62

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +    
Sbjct: 63  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + ++N+++  YG A L G+A ++F+ M       + +TY  +I +YG      +A 
Sbjct: 123 IEPNVVSYNTLVRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKAN 182

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G +    T + ++  +   G    A +LF+   + G   D   ++ +  AY
Sbjct: 183 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAY 242

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            +A +    ++LL  +++   +P
Sbjct: 243 ERAGLVAHAKRLLHELKRPDNIP 265



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 148/331 (44%), Gaps = 15/331 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K   Y  D   Y+ +I V GK    R A  L SEM+ +G  P+ + Y+ L+T ++     
Sbjct: 14  KSSGYXPDLVAYNTMIIVFGKAKLFREARSLISEMKTAGVTPNTTSYSTLLTMYVEN--- 70

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   +AL  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ 
Sbjct: 71  -KKFLEALSVFSEMREI-KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 128

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++  YG   +  E   +   M+    + +++T+N +I  YGK    +K   + + +
Sbjct: 129 SYNTLVRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEM 188

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P   T++++I  +GK     +A  +FQK+ +       I ++ +I  Y     V
Sbjct: 189 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLV 248

Query: 243 SRAREIFDELSK---LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           + A+ +  EL +   + +D  +  L          G   EA  +F  + + G   D + +
Sbjct: 249 AHAKRLLHELKRPDNIPRDTAIHILAGA-------GRIEEATYVFRQAIDAGEVKDITVF 301

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + +    +K      V ++  +M   G  P+
Sbjct: 302 ERMIHLLSKYKKYSNVVEVFDKMRGLGYFPD 332



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 77/159 (48%)

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
           + K   +F  L  S   P L  +N+MII +GKA+L  +A  +  +M     TP+  +Y  
Sbjct: 3   YSKAISIFSRLKSSGYXPDLVAYNTMIIVFGKAKLFREARSLISEMKTAGVTPNTTSYST 62

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           ++TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF     MG
Sbjct: 63  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 123 IEPNVVSYNTLVRVYGDAELFGEAIHLFRLMQRKNIEQN 161



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 86/189 (45%)

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           S+ SR+KS+   PD++ +N +I  +GK + F +   +   +  +   P   ++++++  Y
Sbjct: 8   SIFSRLKSSGYXPDLVAYNTMIIVFGKAKLFREARSLISEMKTAGVTPNTTSYSTLLTMY 67

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            + +   +A  VF +M  +K      T   +I +YG       A ++F  + K+G +  V
Sbjct: 68  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 127

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            + N ++  Y    L  EA  LF       +  +  TY  +   Y K    E    L++ 
Sbjct: 128 VSYNTLVRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQE 187

Query: 322 MEQNGIVPN 330
           M+  GI PN
Sbjct: 188 MQSRGIEPN 196



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 74/157 (47%), Gaps = 9/157 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I++ GK G+   A  LF ++R+SG   D  ++  +I A+    ++A  +A A    
Sbjct: 200 YSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAY----ERAGLVAHAKRLL 255

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++K     +P+ +  +  +   A A  +++   +F++  ++    DI  +  ++    K
Sbjct: 256 HELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSK 310

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170
                 +  V  +M+     PD     +++++YGK Q
Sbjct: 311 YKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQ 347


>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 547

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 162/329 (49%), Gaps = 7/329 (2%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           +KQ+ +  +T  Y+ LI  +GK  Q +L   L +EM++       +   ALI+   H R 
Sbjct: 148 EKQKGFKYNTESYNALIEALGKIKQFKLIRSLVNEMKSRKLLNKDTF--ALISRR-HAR- 203

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            A+ + +A+  F++M+     K     +N LL    ++R+V++ N +F ++ +    PDI
Sbjct: 204 -ARKVEEAIEAFERMEEFG-FKLETSDFNRLLDTLCKSRHVEKANKVFDKMKKRRFVPDI 261

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            +Y  +++ +GK   +  ++ V   MK +  +PD++T+ +LI +Y K + +D   ++F  
Sbjct: 262 KSYTILLEGWGKEHNLLRLDEVYLEMKYDGFEPDVVTYGILISAYCKAKKYDAAIELFHE 321

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           +     KPT   + ++I   G  +   +A   F++  +  +TP   TY  ++  Y +   
Sbjct: 322 MEAKNCKPTPHVYCTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMR 381

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN-SHNMGVTPDSSTYK 300
           +  A ++ DE+ K        T + +L          EA   F+  S+  G  P  STY+
Sbjct: 382 IDDAFQVIDEMRKHSAGPNSRTYDIILHHLIKARRTNEAYFRFQKMSNEPGCEPTVSTYE 441

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           ++ + +   +  +L +++  +M+  G++P
Sbjct: 442 IIVRMFCNEDRVDLAKQVWDQMKAKGVLP 470



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 133/294 (45%), Gaps = 7/294 (2%)

Query: 16  KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQK 75
           +++  +   G   L+ + ++E +  G + +   YNALI A      K K          +
Sbjct: 128 EVLKRLSNAGVIALSFFTWAE-KQKGFKYNTESYNALIEA----LGKIKQFKLIRSLVNE 182

Query: 76  MKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG 135
           MK   R   N  T+ ++ R  A+AR V++    F+ + E     +   +N ++D   K+ 
Sbjct: 183 MKS--RKLLNKDTFALISRRHARARKVEEAIEAFERMEEFGFKLETSDFNRLLDTLCKSR 240

Query: 136 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195
            +++   V  +MK  +  PDI ++ +L++ +GK     ++++V+  + +   +P + T+ 
Sbjct: 241 HVEKANKVFDKMKKRRFVPDIKSYTILLEGWGKEHNLLRLDEVYLEMKYDGFEPDVVTYG 300

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
            +I  Y KA+    A  +F +M A    P+   Y  +I   G    +S A E F+     
Sbjct: 301 ILISAYCKAKKYDAAIELFHEMEAKNCKPTPHVYCTLINGLGSEKRLSEALEFFERFKSC 360

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           G   +  T N+++ AYC +    +A  + +        P+S TY ++     KA
Sbjct: 361 GFTPEAPTYNSLVGAYCWSMRIDDAFQVIDEMRKHSAGPNSRTYDIILHHLIKA 414



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 111/257 (43%), Gaps = 10/257 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+R ++ D   Y+ L+   GK+        ++ EM+  G  PD   Y  LI+A+     K
Sbjct: 253 KKRRFVPDIKSYTILLEGWGKEHNLLRLDEVYLEMKYDGFEPDVVTYGILISAYC----K 308

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           AK    A+  F +M+  + CKP    Y  L+      + + +    F+        P+  
Sbjct: 309 AKKYDAAIELFHEMEA-KNCKPTPHVYCTLINGLGSEKRLSEALEFFERFKSCGFTPEAP 367

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++ AY  +  I +   V+  M+ +   P+  T+++++    K +  +  E  F+  
Sbjct: 368 TYNSLVGAYCWSMRIDDAFQVIDEMRKHSAGPNSRTYDIILHHLIKARRTN--EAYFRFQ 425

Query: 183 MHSKE---KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             S E   +PT+ T+  ++  +        A+ V+ +M A    P    Y  +IT   + 
Sbjct: 426 KMSNEPGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKAKGVLPGMHMYSDLITSLCHK 485

Query: 240 DNVSRAREIFDELSKLG 256
           + +  A + F E+   G
Sbjct: 486 NKLGEACKYFQEMLDAG 502



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 83/212 (39%), Gaps = 36/212 (16%)

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN +++A GK    K + S+++ MKS +   +  TF L+   + + +  ++  + F+ +
Sbjct: 159 SYNALIEALGKIKQFKLIRSLVNEMKSRKL-LNKDTFALISRRHARARKVEEAIEAFERM 217

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                K     FN ++    K+R   KA  VF KM   ++ P   +Y  ++  +G   N+
Sbjct: 218 EEFGFKLETSDFNRLLDTLCKSRHVEKANKVFDKMKKRRFVPDIKSYTILLEGWGKEHNL 277

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            R  E++ E       MK                              G  PD  TY +L
Sbjct: 278 LRLDEVYLE-------MKYD----------------------------GFEPDVVTYGIL 302

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
             AY KA   +   +L   ME     P    +
Sbjct: 303 ISAYCKAKKYDAAIELFHEMEAKNCKPTPHVY 334


>gi|125563733|gb|EAZ09113.1| hypothetical protein OsI_31378 [Oryza sativa Indica Group]
          Length = 618

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 134/303 (44%), Gaps = 10/303 (3%)

Query: 31  MW-LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           +W LF EM   G  P    YN LI A  H  D    +AKA   + +M    R  PN+VTY
Sbjct: 157 VWELFDEMLGRGMVPSVVTYNTLINACRHQGD----VAKAWEVWDQMVA-RRIDPNVVTY 211

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
             ++ A  +   +     LF E+ E+ + P++YTYN +M ++ K   IK        +  
Sbjct: 212 TTMIYALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYYDLLK 271

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
               P+ + F  LID   K     + + +F  +   +  PT+P +NS+I    ++    +
Sbjct: 272 CGLVPNDVIFTTLIDGLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQE 331

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAM 267
           A   FQ++   +  P    + C I + G CD   +  A    + + + G  +  +  N +
Sbjct: 332 ALAFFQEIIRKELRPD--EFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVL 389

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           ++ YC +G   EA +       +GV P+  TY  L   ++K    E+   +   M   G+
Sbjct: 390 IDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGV 449

Query: 328 VPN 330
            PN
Sbjct: 450 EPN 452



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/263 (19%), Positives = 116/263 (44%), Gaps = 4/263 (1%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +AL  F +++ +    P +   N +L    +A  + +V  LF E+    + P + TYN +
Sbjct: 124 EALSVFGRLREL----PALPACNAILDGLVKAHMLARVWELFDEMLGRGMVPSVVTYNTL 179

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++A    G + +   V  +M + +  P+++T+  +I +  +       E +F  +  +  
Sbjct: 180 INACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMIYALCEEDCIGDAEGLFLEMKEAGM 239

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P L T+N+++ ++ K      A   +  +      P+ + +  +I      + ++ A+ 
Sbjct: 240 RPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVIFTTLIDGLCKANRITEAKN 299

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           IF ++ +      V   N+++     +G   EA   F+      + PD  T  ++ +   
Sbjct: 300 IFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKELRPDEFTCSIVVRGLC 359

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
                ++  + L+ M+Q+GI  N
Sbjct: 360 DGGQMQVATRFLEVMQQSGIALN 382



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/299 (20%), Positives = 127/299 (42%), Gaps = 9/299 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + ++     A  LF EM+ +G RP+   YNAL+++H   RD  K    AL ++
Sbjct: 211 YTTMIYALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHF-KRDNIK---HALVFY 266

Query: 74  QKMKGMERCK--PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             +    +C   PN V +  L+    +A  + +   +F ++    +AP +  YN ++   
Sbjct: 267 YDLL---KCGLVPNDVIFTTLIDGLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGA 323

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            ++G  +E  +    +   + +PD  T ++++             +  + +  S      
Sbjct: 324 FRSGYAQEALAFFQEIIRKELRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNA 383

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             +N +I  Y K+    +A     +M+ +   P+ +TY  +I  +     +  A  I+ E
Sbjct: 384 AAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTE 443

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           +   G +  V T  A++  +  NG    A  L +     G+  ++ T  +L     + N
Sbjct: 444 MVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCREN 502



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 138/327 (42%), Gaps = 15/327 (4%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           I++ LI  + K  +   A  +F +M      P   VYN+LI    H   ++    +AL +
Sbjct: 280 IFTTLIDGLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLI----HGAFRSGYAQEALAF 335

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           FQ++   E  +P+  T +I++R       +       + + +S +A +   YN ++D Y 
Sbjct: 336 FQEIIRKE-LRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYC 394

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K+G + E     +RM     +P+++T++ LID + K    +    ++  ++    +P + 
Sbjct: 395 KSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVV 454

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFD 250
           T+ ++I  + K      A ++ ++M       + IT   ++   G C  + V  A     
Sbjct: 455 TYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVD--GLCRENRVQDAVRFIM 512

Query: 251 ELSKLGKDMKVSTLN------AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           E S   K  K  ++        ++    ++G   EA   F    + G+ PD  TY L+ +
Sbjct: 513 EYSGQKKSEKNPSIANSVTYMTLIYGLYIDGQYNEACHFFSCMRDSGMVPDRFTYTLVIR 572

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNK 331
                        L   M + G+ P K
Sbjct: 573 GLCMLGYVLNAMMLYADMVKVGVKPTK 599



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 102/239 (42%), Gaps = 11/239 (4%)

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
            +L+ A +Q    D+  ++F  L E    P +   N ++D   K  M+  +  +   M  
Sbjct: 110 GVLVIALSQMALPDEALSVFGRLRE---LPALPACNAILDGLVKAHMLARVWELFDEMLG 166

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
               P ++T+N LI++   +    K  +V+  ++  +  P + T+ +MI    +    G 
Sbjct: 167 RGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMIYALCEEDCIGD 226

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           AE +F +M      P+  TY  +++ +   DN+  A   + +L K G          +++
Sbjct: 227 AEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVIFTTLID 286

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTY-KLLYKAYTK-------ANMKELVQKLLK 320
             C     TEA  +F +     V P    Y  L++ A+         A  +E+++K L+
Sbjct: 287 GLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKELR 345


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 156/337 (46%), Gaps = 11/337 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ+Q   I D   Y  +IA   + G+   AM  F++M   G +P+  VY++LI       
Sbjct: 428 MQEQ-GVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHG 486

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           +  KA  K L      +G+ R  PNIV +N ++ +  +   V + + +F  +      PD
Sbjct: 487 NLVKA--KELVSEMMSRGIPR--PNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPD 542

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + T+N ++D YG  G I++   VL  M S   +PD++++N LID Y +    D    +F 
Sbjct: 543 VITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFG 602

Query: 181 SLMHSKEKPTLPTFNSMIIN-YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
            ++    KPT  T+  ++   +   R  G A+ +  +M     T    T  C I + G C
Sbjct: 603 EMLSKGVKPTTITYGIILHGLFNDGRTVG-AKKMCHEMIESGTTMDIST--CGIILGGLC 659

Query: 240 DN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
            N     A  +F +L  +     ++ +N M++A        EA  LF++    G+ P++S
Sbjct: 660 RNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEAKELFDSISATGLVPNAS 719

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           TY ++ K   K    E    +   ME++G  P+ R  
Sbjct: 720 TYGVMIKNLLKEGSVEEADNMFSLMEKSGCAPSSRLL 756



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 130/301 (43%), Gaps = 8/301 (2%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           L   M   G  PD   YN ++          +AL       +K  G   C PN+VTYN +
Sbjct: 177 LLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGG---CSPNVVTYNTV 233

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +   V +   LF E+ +  + PD+ TY  ++DA  K   + + E VL +M SN  
Sbjct: 234 IHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGF 293

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           +P+ +T+N +I  Y     + +   +F+ +      P + T NS + +  K     +A  
Sbjct: 294 QPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAE 353

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
            F  M A  + P+ +TY  ++  Y           +F+ +   G        N +++AY 
Sbjct: 354 FFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYG 413

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN-----MKELVQKLLKRMEQNGI 327
             G+  E  L+F      GV PD+ TY ++  A+++       M +  Q +   ++  GI
Sbjct: 414 KRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGI 473

Query: 328 V 328
           V
Sbjct: 474 V 474



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 145/353 (41%), Gaps = 41/353 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + ++G+   A  LF EM   G  PD   Y ++I A      KA+A+ KA    
Sbjct: 230 YNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALC----KARAMDKAELVL 285

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M      +PN VTYN ++   + +    +   +F+E+    L P+I T N  M +  K
Sbjct: 286 RQMIS-NGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCK 344

Query: 134 NGMIKEMESVLSRMKSNQCKPDIIT----------------------------------- 158
           +G  KE       M +   KP+++T                                   
Sbjct: 345 HGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRV 404

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           FN++ID+YGKR   D+   +F  +      P   T+  +I  + +      A   F +M 
Sbjct: 405 FNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMI 464

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG-KDMKVSTLNAMLEAYCMNGLP 277
           AM   P  I Y  +I  +    N+ +A+E+  E+   G     +   N+++ + C  G  
Sbjct: 465 AMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRV 524

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            EA  +F+   ++G  PD  T+  L   Y      E    +L  M   GI P+
Sbjct: 525 VEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPD 577



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 155/350 (44%), Gaps = 43/350 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I      GQ +    +F EM + G  P+    N+ +++ L    K+K  A+   +F
Sbjct: 300 YNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSS-LCKHGKSKEAAE---FF 355

Query: 74  QKMKGMERCKPNIVTYNILLRACA-QARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             M      KPN+VTY++LL   A +   VD +N LF  +  + +  D   +N V+DAYG
Sbjct: 356 DSMAAKGH-KPNLVTYSVLLHGYATEGCFVDMLN-LFNSMEGNGIVADQRVFNIVIDAYG 413

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQ----------- 177
           K GM+ E   + ++M+     PD  T+ ++I ++ +      A DK  Q           
Sbjct: 414 KRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGI 473

Query: 178 VFKSL-----MH-----SKE-----------KPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           V+ SL     MH     +KE           +P +  FNS+I +  K     +A  +F  
Sbjct: 474 VYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDIFDF 533

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           +  +   P  IT+  +I  YG    + +A  + D +   G +  V + N +++ YC NG 
Sbjct: 534 VIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGR 593

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
             +  +LF    + GV P + TY ++             +K+   M ++G
Sbjct: 594 IDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESG 643



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 118/289 (40%), Gaps = 38/289 (13%)

Query: 84  PNIVTYNILLRACAQA------------------------------------RNVDQVNA 107
           P + TYNIL+  C +                                     R+ D VN 
Sbjct: 117 PTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKRSDDVVNL 176

Query: 108 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM--KSNQCKPDIITFNLLIDS 165
           L   + E  + PD  +YN V+    ++   +    +L  M  KS  C P+++T+N +I  
Sbjct: 177 LLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHG 236

Query: 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
             +     K   +F  +M     P + T+ S+I    KAR   KAE V ++M +  + P+
Sbjct: 237 LFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPN 296

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
            +TY C+I  Y           +F E++  G    + T N+ + + C +G   EA   F+
Sbjct: 297 KVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFD 356

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           +    G  P+  TY +L   Y        +  L   ME NGIV ++R F
Sbjct: 357 SMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVF 405



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/344 (21%), Positives = 154/344 (44%), Gaps = 10/344 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R  +     Y+ L+    +  +  +   LF     +G + D  V + L+    H + +
Sbjct: 111 RPRVALPTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAK-R 169

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESI-LAPD 120
           +  +   L +     G+E   P+ ++YN +++  C  +R+   ++ L   + +S   +P+
Sbjct: 170 SDDVVNLLLHRMPELGVE---PDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPN 226

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TYN V+    + G + +  ++   M      PD++T+  +ID+  K +A DK E V +
Sbjct: 227 VVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLR 286

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++ +  +P   T+N MI  Y  +    +   +F++MT+    P+ +T  C   M   C 
Sbjct: 287 QMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVT--CNSYMSSLCK 344

Query: 241 N--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
           +     A E FD ++  G    + T + +L  Y   G   +   LF +    G+  D   
Sbjct: 345 HGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRV 404

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           + ++  AY K  M +    +  +M++ G++P+   +   +  FS
Sbjct: 405 FNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFS 448



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 138/364 (37%), Gaps = 86/364 (23%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           +AD  +++ +I   GK+G     M +F++M+  G  PD   Y  +I A      +   LA
Sbjct: 399 VADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAF----SRMGRLA 454

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            A+  F +M  M                                     L P+   Y+ +
Sbjct: 455 DAMDKFNQMIAMG------------------------------------LKPEGIVYHSL 478

Query: 128 MDAYGKNG-MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +  +  +G ++K  E V   M     +P+I+ FN +I+S  K     +   +F  ++H  
Sbjct: 479 IQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIG 538

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM---KYTPSFITYECIITMYGYCDN-- 241
           E+P + TFNS+I  YG   L GK E  F  + AM      P  ++Y  +I   GYC N  
Sbjct: 539 ERPDVITFNSLIDGYG---LVGKIEKAFGVLDAMISAGIEPDVVSYNTLID--GYCRNGR 593

Query: 242 -----------------------------------VSRAREIFDELSKLGKDMKVSTLNA 266
                                                 A+++  E+ + G  M +ST   
Sbjct: 594 IDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGI 653

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           +L   C N    EA  +F+    M V  + +    +  A  K   +E  ++L   +   G
Sbjct: 654 ILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEAKELFDSISATG 713

Query: 327 IVPN 330
           +VPN
Sbjct: 714 LVPN 717



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 122/297 (41%), Gaps = 9/297 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ +I  + K+G+   A  +F  + + G RPD   +N+LI  +         + KA G  
Sbjct: 511 FNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGY----GLVGKIEKAFGVL 566

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             M   G+E   P++V+YN L+    +   +D    LF E+    + P   TY  ++   
Sbjct: 567 DAMISAGIE---PDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGL 623

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
             +G     + +   M  +    DI T  +++    +    D+   +FK L     K  +
Sbjct: 624 FNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNI 683

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
              N+MI    K R + +A+ +F  ++A    P+  TY  +I       +V  A  +F  
Sbjct: 684 AIINTMIDAMYKVRKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSL 743

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           + K G       LN ++      G   +A           ++ ++ST  LL   +++
Sbjct: 744 MEKSGCAPSSRLLNYIIRVLLEKGEIVKAGNYMFKVDGKRISLEASTVSLLMALFSR 800


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 148/324 (45%), Gaps = 6/324 (1%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           +AD+  ++ LI    K+G    A+ +F+EMR  G  P+   Y  +I A      +   LA
Sbjct: 444 VADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALC----RMGRLA 499

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL-HESILAPDIYTYNG 126
            A+    +M  +   KPN V Y+ L++      ++ +   L  E+  + I  P+I  ++ 
Sbjct: 500 DAMEKLSQMISIG-LKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSS 558

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++ +    G +   + V + +     +PDI TFN LID Y      DK   V  +++ + 
Sbjct: 559 IIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAG 618

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + T++++I  Y K+        +F++M   +  P+ +TY  ++         S A+
Sbjct: 619 TEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAK 678

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           ++F E+ + G  M +ST   +L+  C N    EA  LF     M +  + +    +  A 
Sbjct: 679 KMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHAL 738

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K   +E    L   +  +G+VPN
Sbjct: 739 YKVKRREEAHDLFASVSASGLVPN 762



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 151/326 (46%), Gaps = 14/326 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +IA + + G+   AM   S+M + G +P+  VY++LI       D  KA  K L   
Sbjct: 485 YATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKA--KELVSE 542

Query: 74  QKMKGMERCKPNIVTYNILLRA-CAQAR--NVDQVNALFKELHESILAPDIYTYNGVMDA 130
              +G+ R  PNI  ++ ++ + C + R  N   V  L   + +    PDI+T+N ++D 
Sbjct: 543 MMDQGIPR--PNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDR---PDIFTFNSLIDG 597

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           Y   G + +   VL  M S   +PD++T++ LI+ Y K    D    +F+ ++  + KPT
Sbjct: 598 YCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPT 657

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREI 248
             T++ ++    +A     A+ +F +M       S  TY   I + G C N     A  +
Sbjct: 658 TVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYT--IILQGLCRNNCTDEAITL 715

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F +L  +    +++ LN M+ A        EA  LF +    G+ P++STY ++     K
Sbjct: 716 FHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLK 775

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
               E    +   ME+ G  P+ R  
Sbjct: 776 EGSVEEADIMFSSMEKTGCAPSSRLL 801



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 139/322 (43%), Gaps = 5/322 (1%)

Query: 22  GKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER 81
            K+    L+M L   M   GC PD   YN +I +        +AL   L    +M   + 
Sbjct: 213 AKRTDEALSM-LLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLL----RMTKGDG 267

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C P++V+Y +++        + +   LF E+ +  + P++ TYN ++ A  K   + + E
Sbjct: 268 CSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAE 327

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
            VL +M  N  +PD +T+  +I  Y     + +  ++FK +      P + TFNS++ + 
Sbjct: 328 LVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSL 387

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            K +   +A  +F  +    + P  I+Y  ++  Y           +F  ++  G     
Sbjct: 388 CKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADS 447

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
              N ++ A+   G+  EA L+F      GV+P+  TY  +  A  +        + L +
Sbjct: 448 HCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQ 507

Query: 322 MEQNGIVPNKRFFLEALETFSS 343
           M   G+ PN   +   ++ F +
Sbjct: 508 MISIGLKPNTVVYHSLIQGFCT 529



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 133/290 (45%), Gaps = 5/290 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I  +  +G+   A  LF+EM   G  P+   YN+++    H   KA+A+ KA
Sbjct: 271 DVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIV----HALCKARAMDKA 326

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               ++M      +P+ VTY  ++   +      +   +FKE+    L PDI T+N +MD
Sbjct: 327 ELVLRQMFD-NSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMD 385

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           +  K+   KE   +   + +   KPDII++++L+  Y     F  M  +F S+  +    
Sbjct: 386 SLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVA 445

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               FN +I  + K  +  +A  +F +M     +P+ +TY  +I        ++ A E  
Sbjct: 446 DSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKL 505

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            ++  +G        +++++ +C +G   +A  L     + G+   + T+
Sbjct: 506 SQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITF 555



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 110/251 (43%), Gaps = 1/251 (0%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
            IVT   L   C   R  + ++ L   + E    PD ++YN V+ +       +E   +L
Sbjct: 200 GIVTNTFLKCLCYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDML 259

Query: 145 SRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
            RM K + C PD++++ ++I          K   +F  ++     P + T+NS++    K
Sbjct: 260 LRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCK 319

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           AR   KAE V ++M      P  +TY  +I  Y        A ++F E+++ G    + T
Sbjct: 320 ARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVT 379

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N+++++ C +    EA  +F +    G  PD  +Y +L   Y        +  L   M 
Sbjct: 380 FNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMT 439

Query: 324 QNGIVPNKRFF 334
            NGIV +   F
Sbjct: 440 DNGIVADSHCF 450



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 139/330 (42%), Gaps = 10/330 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           Q+  + +   Y+ ++  + K      A  +  +M ++  +PD   Y A+I    H     
Sbjct: 300 QKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMI----HGYSCL 355

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
               +A   F++M   E   P+IVT+N L+ +  + +   +   +F  +      PDI +
Sbjct: 356 GRWKEAAKMFKEMT-REGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIIS 414

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ ++  Y   G   +M ++   M  N    D   FN+LI+++ KR   D+   +F  + 
Sbjct: 415 YSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMR 474

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DN 241
                P + T+ ++I    +      A     +M ++   P+ + Y  +I   G+C   +
Sbjct: 475 GQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQ--GFCTHGD 532

Query: 242 VSRAREIFDELSKLG-KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           + +A+E+  E+   G     ++  ++++ + C  G    A  +F    ++G  PD  T+ 
Sbjct: 533 LIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFN 592

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            L   Y      +    +L  M   G  P+
Sbjct: 593 SLIDGYCLVGKMDKAFGVLDAMVSAGTEPD 622



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 128/308 (41%), Gaps = 10/308 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +S +I  +  +G+   A  +F+ + + G RPD   +N+LI  +         + KA G  
Sbjct: 556 FSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYC----LVGKMDKAFGVL 611

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             M   G E   P++VTY+ L+    ++  +D    LF+E+    + P   TY+ V+D  
Sbjct: 612 DAMVSAGTE---PDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGL 668

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G     + +   M  +     I T+ +++    +    D+   +F  L     K  +
Sbjct: 669 FRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEI 728

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
              N+MI    K + + +A  +F  ++A    P+  TY  +I       +V  A  +F  
Sbjct: 729 AILNTMIHALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSS 788

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKAN 310
           + K G       LN ++      G   +A           ++ ++ST  LL   + +K  
Sbjct: 789 MEKTGCAPSSRLLNDIIRMLLQKGEIVKAGYYMSKVDGTIISLEASTTSLLISLFASKGR 848

Query: 311 MKELVQKL 318
            +E ++ L
Sbjct: 849 YREQIKFL 856



 Score = 41.2 bits (95), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 88/212 (41%), Gaps = 15/212 (7%)

Query: 142 SVLSRMKSNQCKPDII-----TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           ++ +R+   +  P ++     T+ +L+D   + +  D     F  L+ +  +      N+
Sbjct: 146 ALFNRICREEAGPRVVPLTVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNT 205

Query: 197 MI--INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
            +  + Y K R       +  +M+ +   P   +Y  +I     C   SR++E  D L +
Sbjct: 206 FLKCLCYAK-RTDEALSMLLHRMSELGCVPDAFSYNTVIK--SLCGG-SRSQEALDMLLR 261

Query: 255 L----GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           +    G    V +   ++    M G  ++A  LF      GV P+  TY  +  A  KA 
Sbjct: 262 MTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKAR 321

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
             +  + +L++M  N I P++  +   +  +S
Sbjct: 322 AMDKAELVLRQMFDNSIQPDEVTYTAMIHGYS 353


>gi|302768008|ref|XP_002967424.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
 gi|300165415|gb|EFJ32023.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
          Length = 546

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 146/303 (48%), Gaps = 7/303 (2%)

Query: 26  QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85
           Q  LA  L  EM      PD   ++ LI+ +     +A  L  A+G+ Q+M+     KP+
Sbjct: 40  QWELAEGLVLEMVEKDLVPDKFTFSTLISGY----GRANRLEDAMGWLQEMEA-GGIKPD 94

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           +V ++ L+    + ++  +  +LF +L  S +APD   YN +++ YGK    KE + +L+
Sbjct: 95  LVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLA 154

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
            MK     PD +++ +LI++Y + Q + + +QVF  +     +  + T N MI  YGK  
Sbjct: 155 EMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLE 214

Query: 206 LQGKAEYVFQKMT-AMKYTPSFITYECIITMYGYCDNVSRAREIFDEL-SKLGKDMKVST 263
           +   AE +F  M+  +    + +TY  +I +Y   + +S A  +F  + +K G +  V T
Sbjct: 215 MVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVIT 274

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N +L  + +     +A  L       G+ P++ TY  L   Y K    +    L K + 
Sbjct: 275 YNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLR 334

Query: 324 QNG 326
           + G
Sbjct: 335 EKG 337



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 124/249 (49%), Gaps = 2/249 (0%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+I  YN++L+   +AR  +    L  E+ E  L PD +T++ ++  YG+   +++    
Sbjct: 23  PSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDAMGW 82

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L  M++   KPD++ F+ LI+  GK + + K   +F  L  S   P    +NSMI  YGK
Sbjct: 83  LQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGK 142

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A+   +A+ +  +M      P  ++Y  +I  Y        A+++F E+   G  + V+T
Sbjct: 143 AKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTT 202

Query: 264 LNAMLEAYCMNGLPTEADLLFEN-SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
            N M++ Y    +  +A+ LF + S  +G+  +  TY  + K Y +A +      +   M
Sbjct: 203 CNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYM 262

Query: 323 E-QNGIVPN 330
           + + G+ PN
Sbjct: 263 QNKGGVEPN 271



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 144/298 (48%), Gaps = 7/298 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  I+S LI + GK      A  LFS+++ SG  PD  +YN++I  +     KAK   +A
Sbjct: 94  DLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLY----GKAKFYKEA 149

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            G   +MK      P+ V+Y IL+ A A+++   +   +F E+    +  D+ T N ++D
Sbjct: 150 QGLLAEMKEA-GLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMID 208

Query: 130 AYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH-SKE 187
            YGK  M+++ E +   M K+   + +++T+N +I  Y + +   +   VF  + +    
Sbjct: 209 VYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKGGV 268

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P + T+N+++  +G      KA  + +KM      P+ +TY  +I++YG      RA  
Sbjct: 269 EPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAF 328

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           +F  L + G +M      +M+  Y   GL   A  L E      + P  +   +L KA
Sbjct: 329 LFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKRLLEELKQPDIVPRDTAISILAKA 386



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 156/367 (42%), Gaps = 36/367 (9%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD-------- 61
           D  IY+ +I + GK    + A  L +EM+ +G  PD   Y  LI A+  ++         
Sbjct: 129 DKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVF 188

Query: 62  -----------------------KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
                                  K + +  A   F  M      + N+VTYN +++   +
Sbjct: 189 LEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKE 248

Query: 99  ARNVDQV-NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           A  + +  N  +   ++  + P++ TYN ++  +G     ++   ++ +M+    +P+ +
Sbjct: 249 AELLSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAV 308

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           T++ LI  YGK   +D+   +FK+L     +     + SMI+ Y +A L   A+ + +++
Sbjct: 309 TYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKRLLEEL 368

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
                 P  +  +  I++    + +  A +++    + G+  +  T  +M++ +  N   
Sbjct: 369 K----QPDIVPRDTAISILAKAEKLEEAAKLYWRSHEAGEIKESVTYKSMIQLFMRNKRS 424

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEA 337
             A  +FEN    G  PDS T  +L  AY +    E  +KL   M + G    K    + 
Sbjct: 425 KNAIDVFENMRESGFLPDSETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQM 484

Query: 338 LETFSSS 344
           L+ +  +
Sbjct: 485 LKLYGDA 491



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 100/247 (40%), Gaps = 13/247 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT--RDKAKALAKALG 71
           Y+ ++ + G   Q   AM L  +M+  G  P+   Y+ LI+ +  T   D+A  L K L 
Sbjct: 275 YNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTL- 333

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
              + KG E  +   + Y  ++    +A  V    A  K L E +  PDI   +  +   
Sbjct: 334 ---REKGFEMDE---ILYQSMIVVYERAGLV----AHAKRLLEELKQPDIVPRDTAISIL 383

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K   ++E   +  R        + +T+  +I  + + +       VF+++  S   P  
Sbjct: 384 AKAEKLEEAAKLYWRSHEAGEIKESVTYKSMIQLFMRNKRSKNAIDVFENMRESGFLPDS 443

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T   ++  YG+ R    AE ++  M     T     +  ++ +YG    +  A ++F  
Sbjct: 444 ETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQMLKLYGDARKIREAEDMFAA 503

Query: 252 LSKLGKD 258
           L   G D
Sbjct: 504 LKLEGLD 510


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 148/330 (44%), Gaps = 10/330 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ LI    KKG+   A  LF EM   G   +   Y  LI        K +        
Sbjct: 200 IYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFE----M 255

Query: 73  FQKMKGMERCKPNIVTYNILL-RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           ++KM+  +   PN+ TYN ++ + C   R  D    +F E+ E  ++ +I TYN ++   
Sbjct: 256 YEKMQE-DGVFPNLYTYNCVMNQLCKDGRTKDAFQ-VFDEMRERGVSCNIVTYNTLIGGL 313

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            +   + E   V+ +MKS+   P++IT+N LID +       K   + + L      P+L
Sbjct: 314 CREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSL 373

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+N ++  + +      A  + ++M      PS +TY  +I  +   DN+ +A ++   
Sbjct: 374 VTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLS 433

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + +LG    V T + ++  +C+ G   EA  LF++       P+   Y  +   Y K   
Sbjct: 434 MEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGS 493

Query: 312 KELVQKLLKRMEQNGIVPNK---RFFLEAL 338
                KLLK ME+  + PN    R+ +E L
Sbjct: 494 SYRALKLLKEMEEKELAPNVASYRYMIEVL 523



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 133/294 (45%), Gaps = 9/294 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ ++  + K G+T+ A  +F EMR  G   +   YN LI        +   L +A    
Sbjct: 271 YNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLC----REMKLNEANKVV 326

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +MK  +   PN++TYN L+        + +  +L ++L    L+P + TYN ++  + +
Sbjct: 327 DQMKS-DGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCR 385

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G       ++  M+    KP  +T+ +LID++ +    +K  Q+  S+      P + T
Sbjct: 386 KGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHT 445

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS--RAREIFDE 251
           ++ +I  +       +A  +F+ M      P+ + Y  +I   GYC   S  RA ++  E
Sbjct: 446 YSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMI--LGYCKEGSSYRALKLLKE 503

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           + +      V++   M+E  C      EA+ L E   + G+ P +S   L+ +A
Sbjct: 504 MEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLISRA 557



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 154/334 (46%), Gaps = 10/334 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y  +I    +     L++  F+EM ++G  P  + +N L+T  +     + +  +   +
Sbjct: 96  LYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVV----GSSSFNQWWSF 151

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F + K   +   ++ ++ IL++ C +A  +++   L  EL E   +P++  Y  ++D   
Sbjct: 152 FNENKS--KVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCC 209

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G I++ + +   M       +  T+ +LI+   K     +  ++++ +      P L 
Sbjct: 210 KKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLY 269

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFD 250
           T+N ++    K      A  VF +M     + + +TY  +I   G C    ++ A ++ D
Sbjct: 270 TYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIG--GLCREMKLNEANKVVD 327

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           ++   G +  + T N +++ +C  G   +A  L  +  + G++P   TY +L   + +  
Sbjct: 328 QMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKG 387

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
                 K++K ME+ GI P+K  +   ++TF+ S
Sbjct: 388 DTSGAAKMVKEMEERGIKPSKVTYTILIDTFARS 421


>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 830

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 154/319 (48%), Gaps = 11/319 (3%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S +I+  G++G    A    +E++ +G +P   +YN++    L    KA    +AL   +
Sbjct: 291 STVISACGREGMLDEARKFLAELKLNGYKPGTVMYNSM----LQVFGKAGIYTEALSILK 346

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M+    C P+ +TYN L     +A  +D+  A+   +    + P+  TY  V+DAYGK 
Sbjct: 347 EMED-NNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKA 405

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G   +   + S+MK   C P++ T+N ++   GK+   + + +V   +  +   P   T+
Sbjct: 406 GREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATW 465

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVSRAREIFDE 251
           N+M+        +GK  YV + +  MK   + P   T+  +I+ Y  C +   + +++ E
Sbjct: 466 NTML---AVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGE 522

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + K G    V+T NA+L A    G    A+ + ++    G  P+ ++Y LL   Y+KA  
Sbjct: 523 MVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGN 582

Query: 312 KELVQKLLKRMEQNGIVPN 330
              ++K+ K +    + P+
Sbjct: 583 VRGIEKVEKEIYDGQVFPS 601



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 163/381 (42%), Gaps = 44/381 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I   GK G+   A+ LFS+M++ GC P+   YN+++ A L  + + + + K L   
Sbjct: 395 YTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVL-AMLGKKSRTEDVIKVLC-- 451

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD------------- 120
            +MK +  C PN  T+N +L  C++    + VN + +E+      PD             
Sbjct: 452 -EMK-LNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYAR 509

Query: 121 ----------------------IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
                                 + TYN +++A    G  K  ESV+  M++   KP+  +
Sbjct: 510 CGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETS 569

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           ++LL+  Y K      +E+V K +   +  P+     +++++  K R     E  F ++ 
Sbjct: 570 YSLLLHCYSKAGNVRGIEKVEKEIYDGQVFPSWILLRTLVLSNHKCRHLRGMERAFDQLQ 629

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
              Y P  +    +++M+      S+ARE+   + + G    + T N +++ Y       
Sbjct: 630 KYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREDECW 689

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           +A+ + +   N    PD  +Y  + K + +  + +   ++L  M   GI P     +   
Sbjct: 690 KAEEVLKGIQNSVPEPDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPT----IVTY 745

Query: 339 ETFSSSLAGSQSGSAKTDLTR 359
            TF S  AG +      ++ R
Sbjct: 746 NTFLSGYAGMELFDEANEVIR 766



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 136/325 (41%), Gaps = 8/325 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D   Y+ ++    + G+ + A+ LF +M   G  P    YN ++  +       ++ 
Sbjct: 212 YSLDVRAYTTILHAYARSGKYKRAIDLFDKMEGIGLDPTLVTYNVMLDVY---GKMGRSW 268

Query: 67  AKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            + L    +M  KG+E    +  T + ++ AC +   +D+      EL  +   P    Y
Sbjct: 269 GRILELLDEMRSKGLEF---DEFTCSTVISACGREGMLDEARKFLAELKLNGYKPGTVMY 325

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++  +GK G+  E  S+L  M+ N C PD IT+N L  +Y +    D+   V  ++  
Sbjct: 326 NSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTS 385

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P   T+ ++I  YGKA  +  A  +F KM  +   P+  TY  ++ M G       
Sbjct: 386 KGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTED 445

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
             ++  E+   G     +T N ML      G     + +     N G  PD  T+  L  
Sbjct: 446 VIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLIS 505

Query: 305 AYTKANMKELVQKLLKRMEQNGIVP 329
           +Y +   +    K+   M ++G  P
Sbjct: 506 SYARCGSEVDSAKMYGEMVKSGFTP 530



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 138/318 (43%), Gaps = 5/318 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ ++AV  ++G+      +  EM+N G  PD   +N LI+++     +  + AK  G  
Sbjct: 465 WNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDS-AKMYGEM 523

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K  G   C   + TYN LL A A   +     ++ +++      P+  +Y+ ++  Y K
Sbjct: 524 VK-SGFTPC---VTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSK 579

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++ +E V   +   Q  P  I    L+ S  K +    ME+ F  L     KP L  
Sbjct: 580 AGNVRGIEKVEKEIYDGQVFPSWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDLVV 639

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            NSM+  + + ++  KA  +   +      P+  TY C++ +Y   D   +A E+   + 
Sbjct: 640 INSMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREDECWKAEEVLKGIQ 699

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
               +  V + N +++ +C  GL  EA  +       G+ P   TY      Y    + +
Sbjct: 700 NSVPEPDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFD 759

Query: 314 LVQKLLKRMEQNGIVPNK 331
              ++++ M ++   P++
Sbjct: 760 EANEVIRFMIEHNCRPSE 777



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 142/322 (44%), Gaps = 13/322 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ LI+   + G    +  ++ EM  SG  P  + YNAL+ A  H R   KA    
Sbjct: 496 DKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAH-RGDWKAAESV 554

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +   Q  KG    KPN  +Y++LL   ++A NV  +  + KE+++  + P       ++ 
Sbjct: 555 IQDMQT-KGF---KPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFPSWILLRTLVL 610

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           +  K   ++ ME    +++    KPD++  N ++  + + + F K  ++   +     +P
Sbjct: 611 SNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQP 670

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRARE 247
            L T+N ++  Y +     KAE V + +      P  ++Y  +I   G+C    +  A  
Sbjct: 671 NLFTYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDVVSYNTVIK--GFCRKGLMQEAIR 728

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD--LLFENSHNMGVTPDSSTYKLLYKA 305
           +  E++  G    + T N  L  Y    L  EA+  + F   HN    P   TYK+L   
Sbjct: 729 VLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHN--CRPSELTYKILVDG 786

Query: 306 YTKANMKELVQKLLKRMEQNGI 327
           Y KA   E     + ++++  I
Sbjct: 787 YCKAGKHEEAMDFVTKIKEIDI 808



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 113/254 (44%), Gaps = 1/254 (0%)

Query: 79  MERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-I 137
           +E+   ++  Y  +L A A++    +   LF ++    L P + TYN ++D YGK G   
Sbjct: 209 VEKYSLDVRAYTTILHAYARSGKYKRAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMGRSW 268

Query: 138 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 197
             +  +L  M+S   + D  T + +I + G+    D+  +    L  +  KP    +NSM
Sbjct: 269 GRILELLDEMRSKGLEFDEFTCSTVISACGREGMLDEARKFLAELKLNGYKPGTVMYNSM 328

Query: 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK 257
           +  +GKA +  +A  + ++M      P  ITY  +   Y     +     + D ++  G 
Sbjct: 329 LQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKGV 388

Query: 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
                T   +++AY   G   +A  LF    ++G  P+  TY  +     K +  E V K
Sbjct: 389 MPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIK 448

Query: 318 LLKRMEQNGIVPNK 331
           +L  M+ NG  PN+
Sbjct: 449 VLCEMKLNGCAPNR 462



 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 75/182 (41%), Gaps = 1/182 (0%)

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
           L++   G+        ++F  +   K    +  + +++  Y ++    +A  +F KM  +
Sbjct: 186 LMVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHAYARSGKYKRAIDLFDKMEGI 245

Query: 221 KYTPSFITYECIITMYGYCD-NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
              P+ +TY  ++ +YG    +  R  E+ DE+   G +    T + ++ A    G+  E
Sbjct: 246 GLDPTLVTYNVMLDVYGKMGRSWGRILELLDEMRSKGLEFDEFTCSTVISACGREGMLDE 305

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
           A          G  P +  Y  + + + KA +      +LK ME N   P+   + E   
Sbjct: 306 ARKFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAA 365

Query: 340 TF 341
           T+
Sbjct: 366 TY 367



 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 1/149 (0%)

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           M+   G+      A  +F  +   KY+     Y  I+  Y       RA ++FD++  +G
Sbjct: 187 MVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHAYARSGKYKRAIDLFDKMEGIG 246

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADL-LFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
            D  + T N ML+ Y   G      L L +   + G+  D  T   +  A  +  M +  
Sbjct: 247 LDPTLVTYNVMLDVYGKMGRSWGRILELLDEMRSKGLEFDEFTCSTVISACGREGMLDEA 306

Query: 316 QKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           +K L  ++ NG  P    +   L+ F  +
Sbjct: 307 RKFLAELKLNGYKPGTVMYNSMLQVFGKA 335


>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
 gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
          Length = 677

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 144/334 (43%), Gaps = 11/334 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+ Q  Y A   IY  +I +  +  Q   A  LF EM+   C+PD  +YN+LI  H H+R
Sbjct: 1   MKNQDNYCARNDIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLI--HAHSR 58

Query: 61  DKAKALAKALGYFQKMKGMERCK--PNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
                 A        M+ M R    P   TYN ++ AC  A N  +   L K++ E+ + 
Sbjct: 59  AGQWRWA-----INIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVG 113

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD+ T+N V+ A        +  S    MK      D  T N++I    K     +  ++
Sbjct: 114 PDLVTHNIVLSALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIEL 173

Query: 179 FKSLMHSKEK--PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           F S+   + K  P + T+ S++ +Y         + +F  M A    P+ + Y  ++  Y
Sbjct: 174 FNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAY 233

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                   A  IF+ + K G    + +  ++L AY  +  P +A  +F         P+ 
Sbjct: 234 ASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNK 293

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +Y  L  AY  A M +    LL  ME++GI P+
Sbjct: 294 VSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPD 327



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 148/331 (44%), Gaps = 40/331 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I   G  G  + A+ L  +M  +G  PD   +N +++A    ++ A+  +KA+ YF
Sbjct: 84  YNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSA---LKNGAQ-YSKAISYF 139

Query: 74  QKMKGME------------------------------------RCKPNIVTYNILLRACA 97
           + MKG                                      +C P++VTY  ++ +  
Sbjct: 140 EIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYC 199

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
               V+   A+F  +    + P+I  YN ++ AY   GM +E  ++ + +K N  +PDI+
Sbjct: 200 IYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIV 259

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           ++  L+++YG+    +K  +VF  +  +  KP   ++N++I  YG A +  +A  +  +M
Sbjct: 260 SYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEM 319

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
                 P  ++   ++   G C  ++R   I +     G D+     N+ +++Y   G  
Sbjct: 320 EKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDY 379

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            +A  L+ +     V PD+ TY +L    +K
Sbjct: 380 EKALELYTSMRESNVKPDAVTYNILISGSSK 410



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 162/371 (43%), Gaps = 42/371 (11%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN--SGCRPDPSVYNALITAHLHTRDKAKAL 66
           +DT   + +I  + K GQ   A+ LF+ MR   + C PD   Y    T+ +H+      +
Sbjct: 149 SDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTY----TSIMHSYCIYGQV 204

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
                 F  M   E  KPNIV YN LL A A      +  A+F  + ++ L PDI +Y  
Sbjct: 205 ENCKAIFDLMVA-EGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTS 263

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++AYG++   ++   V ++MK N CKP+ +++N LID+YG      +   +   +    
Sbjct: 264 LLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDG 323

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + + ++++   G+ R   + E + +   +     + + Y   I  Y    +  +A 
Sbjct: 324 IQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKAL 383

Query: 247 EIFDEL-------------------SKLGK------------DMKVST----LNAMLEAY 271
           E++  +                   SKLGK            D KVS+     ++++ +Y
Sbjct: 384 ELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEVYSSLIYSY 443

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
              G  +EA+  F +    G  PD  TY  L +AY      +    L K ME NGI P+ 
Sbjct: 444 IKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDA 503

Query: 332 RFFLEALETFS 342
                 +E F+
Sbjct: 504 IICSSLMEAFN 514



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 152/327 (46%), Gaps = 5/327 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+     +G  R A+ +F+ ++ +G RPD   Y +L+ A+     ++    KA   F
Sbjct: 226 YNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAY----GRSAQPEKAREVF 281

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KMK    CKPN V+YN L+ A   A  + +   L  E+ +  + PD+ + + ++ A G+
Sbjct: 282 NKMKK-NSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGR 340

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              I  +E++L   +S     + + +N  I SY     ++K  +++ S+  S  KP   T
Sbjct: 341 CRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVT 400

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N +I    K     ++   F+ M   K + +   Y  +I  Y     +S A   F  + 
Sbjct: 401 YNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEVYSSLIYSYIKQGKLSEAESTFSSMK 460

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           K G    V T   +++AY   G    A  LF+     G+ PD+     L +A+ K    E
Sbjct: 461 KSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEAFNKGGEPE 520

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALET 340
            V +L++ M++  I  N++ + E + +
Sbjct: 521 RVLQLMEFMKKKSIPLNQKSYFEIIAS 547



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 126/279 (45%), Gaps = 3/279 (1%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A G F +M+   RCKP+   YN L+ A ++A        + +++  + + P   TYN V
Sbjct: 29  QARGLFFEMQEW-RCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNV 87

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++A G  G  K+   +  +M  N   PD++T N+++ +      + K    F+ +  +  
Sbjct: 88  INACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMKGANV 147

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTA--MKYTPSFITYECIITMYGYCDNVSRA 245
                T N +I    K    G+A  +F  M     K  P  +TY  I+  Y     V   
Sbjct: 148 TSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENC 207

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           + IFD +   G    +   N++L AY   G+  EA  +F      G+ PD  +Y  L  A
Sbjct: 208 KAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNA 267

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           Y ++   E  +++  +M++N   PNK  +   ++ + S+
Sbjct: 268 YGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSA 306



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+   K G+   ++  F +M +S       VY++LI +++    K   L++A
Sbjct: 397 DAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEVYSSLIYSYI----KQGKLSEA 452

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F  MK    C P+++TY  L++A        +   LFKE+  + + PD    + +M+
Sbjct: 453 ESTFSSMKK-SGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLME 511

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A+ K G  + +  ++  MK      +  ++  +I S    + +    ++ + L  S    
Sbjct: 512 AFNKGGEPERVLQLMEFMKKKSIPLNQKSYFEIIASCTMIRDWKTASEMIEYLDSSLSSI 571

Query: 190 TLPTFNSMIINYGKARLQGKAEY---VFQKMTAMKYTPSFITYECII 233
           ++ T N ++   GK    GK E    +F KM     T    TY  ++
Sbjct: 572 SVGTLNHVLNFLGKC---GKTENMMKLFYKMVTSCSTVGLSTYAVVL 615


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 146/326 (44%), Gaps = 23/326 (7%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCR--PDPSVYNALITAHLHTRDKAKALAK--- 68
           Y+  +  + K+  T  A  L   +R+   R  PD   ++ LI          +A      
Sbjct: 191 YNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNDDMI 250

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A GY           PN+VTYN L+    +A  +++ +A+ + + +  + PD+ TY+ ++
Sbjct: 251 AGGYV----------PNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLV 300

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR----QAFDKMEQVFKSLMH 184
           DA+ K   + E   +L  M S  C P+++TFN +ID   K     +AF    QV+  ++ 
Sbjct: 301 DAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRML- 359

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P   TFN +I    KA    +A  +F++M A    P  +T+  +I        V  
Sbjct: 360 ---VPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEA 416

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           AR+I D +  LG    V T N ++   C +G   E     E   + G  P+S TY  L  
Sbjct: 417 ARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVY 476

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
           A  +A+  +   +L+ +++  G  P+
Sbjct: 477 ALCRASRTDDALQLVSKLKSFGWDPD 502



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 138/325 (42%), Gaps = 11/325 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + K  +    M LF E+   G  PD   YN LI +     D  +  A+ L   
Sbjct: 84  YNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEE--ARRLHGG 141

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL--HESILAPDIYTYNGVMDAY 131
              +G   C PN+VTY++L+    +   +D+   L +E+      + P+I TYN  +D  
Sbjct: 142 MSSRG---CVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGL 198

Query: 132 GKNGMIKEMESVLSRMKSNQCK--PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            K  M  E   ++  ++    +  PD +TF+ LID   K    D  E     ++     P
Sbjct: 199 CKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTD--EACNDDMIAGGYVP 256

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+N+++    KA    +A  + + M     TP  ITY  ++  +     V  A E+ 
Sbjct: 257 NVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELL 316

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             ++  G    V T N++++  C +    EA  +    +N  + PD  T+ +L     KA
Sbjct: 317 HGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKA 376

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
              E    L + M    + P+   F
Sbjct: 377 GNFEQASALFEEMVAKNMQPDVMTF 401



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 137/301 (45%), Gaps = 9/301 (2%)

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
           L +  +A   A+AL  F+     +   P IVTYN ++    ++  +     LF+EL +  
Sbjct: 52  LQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRG 111

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
             PD+ TYN ++D+  K G ++E   +   M S  C P+++T+++LI+   K    D+  
Sbjct: 112 HHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEAR 171

Query: 177 QVFKSLMHSKEK--PTLPTFNSMIINYGKARLQGKAEYVFQKM--TAMKYTPSFITYECI 232
           ++ + +        P + T+NS +    K  +  +A  + + +   +++ +P  +T+  +
Sbjct: 172 ELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTL 231

Query: 233 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV 292
           I     C     A    D++   G    V T NA++   C       A  + E+  + GV
Sbjct: 232 IDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGV 289

Query: 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGS 352
           TPD  TY +L  A+ KA+  +   +LL  M   G  PN   F   ++    S    +SG 
Sbjct: 290 TPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKS---DRSGE 346

Query: 353 A 353
           A
Sbjct: 347 A 347



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 151/345 (43%), Gaps = 17/345 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  +S LI  + K GQT  A     +M   G  P+   YNAL+        KA  + +A
Sbjct: 224 DTVTFSTLIDGLCKCGQTDEA--CNDDMIAGGYVPNVVTYNALVNGLC----KADKMERA 277

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
               + M  KG+    P+++TY++L+ A  +A  VD+   L   +      P++ T+N +
Sbjct: 278 HAMIESMVDKGV---TPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSI 334

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D   K+    E   +  ++ +    PD +TFN+LI    K   F++   +F+ ++    
Sbjct: 335 IDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNM 394

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRA 245
           +P + TF ++I    KA     A  +   M  +   P+ +TY  ++  +G C +  +   
Sbjct: 395 QPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLV--HGLCKSGRIEEP 452

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            E  +E+   G   +  T  +++ A C      +A  L     + G  PD+ TY +L   
Sbjct: 453 CEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDG 512

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF--SSSLAGS 348
             K+   E    +L+ M   G  P+   F         S +LAG+
Sbjct: 513 LWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGT 557



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 5/191 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R  + D   ++ LIA   K G    A  LF EM     +PD   + ALI        KA
Sbjct: 356 NRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLC----KA 411

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             +  A      M G     PN+VTYN+L+    ++  +++     +E+  S   P+  T
Sbjct: 412 GQVEAARDILDLM-GNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMT 470

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++ A  +     +   ++S++KS    PD +T+N+L+D   K    ++   V + ++
Sbjct: 471 YGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMV 530

Query: 184 HSKEKPTLPTF 194
               +P   TF
Sbjct: 531 GKGHQPDSFTF 541


>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
 gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
          Length = 455

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 147/320 (45%), Gaps = 9/320 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLHTRDKAKALAKAL 70
           I++   +   K G    AM +F++MR  G  PD   Y ALI A   L   D A+      
Sbjct: 32  IFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDDAEV----- 86

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
             F +M   E   PNIV ++ L+         ++V  LF E+    + P+I  +N ++  
Sbjct: 87  -KFNQMIN-EGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCN 144

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             K G + E + ++  ++    +PD+I++N LID +      D+  ++ + ++    KP 
Sbjct: 145 LCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPN 204

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             ++N+++  Y KA     A  +F+KM +   TP  +TY  I+         S A+E++ 
Sbjct: 205 SFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYL 264

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            +   G    + T N +L   C +    EA  +F++  + G+  +  T+ ++  A  K  
Sbjct: 265 NMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGG 324

Query: 311 MKELVQKLLKRMEQNGIVPN 330
            KE    L   +  NG+VP+
Sbjct: 325 RKEDAMDLFAAIPANGLVPD 344



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 99/213 (46%)

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           ++P+ + +N    AY K GMI +   + ++M+ +   PD +++  LID+  K    D  E
Sbjct: 26  ISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDDAE 85

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
             F  +++    P +  F+S++          K E +F +M  +   P+ + +  I+   
Sbjct: 86  VKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNL 145

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                V   + + D +  +G    V + N +++ +C+ G   EA  L E   ++G+ P+S
Sbjct: 146 CKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNS 205

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
            +Y  L   Y KA   +    L ++M  NGI P
Sbjct: 206 FSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITP 238



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 112/248 (45%), Gaps = 4/248 (1%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           PN   +NI   A A+   +D+   +F ++ +  L+PD  +Y  ++DA  K G + + E  
Sbjct: 28  PNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDDAEVK 87

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
            ++M +    P+I+ F+ L+        ++K+E++F  +++    P +  FN+++ N  K
Sbjct: 88  FNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCK 147

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
                + + +   +  M   P  I+Y  +I  +     +  A ++ + +  +G      +
Sbjct: 148 EGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFS 207

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL----LYKAYTKANMKELVQKLL 319
            N +L  YC  G    A  LF    + G+TP   TY      L++    +  KEL   ++
Sbjct: 208 YNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMI 267

Query: 320 KRMEQNGI 327
               + GI
Sbjct: 268 NSGTKWGI 275



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 4/206 (1%)

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  YG  G + EM  +L+ M +N   P+   FN+   +Y K    DK   +F  +    
Sbjct: 1   MLHGYGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 60

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSR 244
             P   ++ ++I    K      AE  F +M     TP+ + +  ++  YG C  D   +
Sbjct: 61  LSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLV--YGLCSIDKWEK 118

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
             E+F E+  +G    +   N +L   C  G   E   L ++   MGV PD  +Y  L  
Sbjct: 119 VEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLID 178

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
            +  A   +   KLL+ M   G+ PN
Sbjct: 179 GHCLAGTIDEASKLLEGMVSVGLKPN 204



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 106/258 (41%), Gaps = 5/258 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI      G    A  L   M + G +P+   YN L    LH   KA  +  A   F
Sbjct: 173 YNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTL----LHGYCKAGRIDSAYSLF 228

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KM       P +VTYN +L    Q +   +   L+  +  S     IYTYN +++   K
Sbjct: 229 RKMLS-NGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWGIYTYNTILNGLCK 287

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +  + E   +   + S   + +IITF ++I +  K    +    +F ++  +   P + T
Sbjct: 288 SNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVT 347

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +  +  N  +     + + +F  M      P+      ++    +  ++SRA     +L 
Sbjct: 348 YRVVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLD 407

Query: 254 KLGKDMKVSTLNAMLEAY 271
           +    ++ ST + ++  +
Sbjct: 408 ERNFSVEASTTSMLISIF 425



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 60/138 (43%)

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           M+  YG      +   +   M A   +P+   +    + Y  C  + +A +IF+++ + G
Sbjct: 1   MLHGYGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 60

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
                 +  A+++A C  G   +A++ F    N GVTP+   +  L       +  E V+
Sbjct: 61  LSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVE 120

Query: 317 KLLKRMEQNGIVPNKRFF 334
           +L   M   GI PN  FF
Sbjct: 121 ELFFEMLNVGIHPNIVFF 138


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 146/342 (42%), Gaps = 21/342 (6%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           + +I DT  YSK+I ++    +   A  LF EM+++   PD   Y  LI +      K  
Sbjct: 474 KGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFC----KVG 529

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            L +A  +F +M   + C PN+VTY  L+ A  +AR +   N LF+ +      P++ TY
Sbjct: 530 LLQQARKWFDEMV-RDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTY 588

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPD----------------IITFNLLIDSYGK 168
             ++D + K+G I++   + +RM+ N   PD                I T+  L+D   K
Sbjct: 589 TALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCK 648

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
                +   +   +     +P    ++++I  + K     +A+ VF KM+   Y P+  T
Sbjct: 649 AHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYT 708

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
           Y  +I        +  A ++   + +      V     M++  C  G   EA  L     
Sbjct: 709 YSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMME 768

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             G  P+  TY  +   + KA   +   +L+++M   G  PN
Sbjct: 769 EKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPN 810



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 160/380 (42%), Gaps = 54/380 (14%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI------------------- 53
           I++ LI    + G    A  L  +M + GC+P   VYN LI                   
Sbjct: 371 IFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAE 430

Query: 54  -------TAHL-----HTRDKAKALAKALGYFQKMKGMER------CKPNIVTYNILLRA 95
                   AH+     +  + A+ L  A G F+K   + R        P+  TY+ ++  
Sbjct: 431 KAYGEMLDAHVVLNKVNVSNLARCLCGA-GKFEKAYSIIREMMSKGFIPDTSTYSKVIGL 489

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
              A  VD    LF+E+  + + PD++TY  ++D++ K G++++       M  + C P+
Sbjct: 490 LCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPN 549

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK-----------A 204
           ++T+  LI +Y K +      ++F+ ++     P + T+ ++I  + K           A
Sbjct: 550 VVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYA 609

Query: 205 RLQGKAEY-----VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
           R++G A+       F+        P+  TY  ++        V  AR++ D +S  G + 
Sbjct: 610 RMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEP 669

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
                +A+++ +C  G   EA ++F      G  P+  TY  L     K    +L  K+L
Sbjct: 670 NHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVL 729

Query: 320 KRMEQNGIVPNKRFFLEALE 339
            RM +N   PN   + E ++
Sbjct: 730 SRMLENSCAPNVIIYTEMID 749



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 149/341 (43%), Gaps = 27/341 (7%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K    + D   Y+ LI    K G  + A   F EM   GC P+   Y ALI A+L    K
Sbjct: 507 KSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYL----K 562

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILL----------RAC---AQAR---NVDQVN 106
           A+ ++ A   F+ M   E C PN+VTY  L+          +AC   A+ R   ++  V+
Sbjct: 563 ARKMSSANELFEMMLS-EGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVD 621

Query: 107 ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
             FK    +I  P+I+TY  ++D   K   +KE   +L  M    C+P+ I ++ LID +
Sbjct: 622 MYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGF 681

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
            K    D+ + VF  +      P + T++S+I    K +    A  V  +M      P+ 
Sbjct: 682 CKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNV 741

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKL---GKDMKVSTLNAMLEAYCMNGLPTEADLL 283
           I Y  +I   G C  V +  E +  +S +   G    V T  AM++ +   G   +   L
Sbjct: 742 IIYTEMID--GLC-KVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLEL 798

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
                  G  P+  TY++L      A + +   +LL  M+Q
Sbjct: 799 MRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQ 839



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 145/326 (44%), Gaps = 13/326 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD--KAKA 65
           I +   Y+ LI    K GQ   A  +++ MR +   PD  +Y  +   ++   +     A
Sbjct: 582 IPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGA 641

Query: 66  LAKALGYFQKMK---------GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
           L   L    K+K          +E C+PN + Y+ L+    +   +D+   +F ++ E  
Sbjct: 642 LVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERG 701

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
             P++YTY+ ++D   K+  +     VLSRM  N C P++I +  +ID   K    D+  
Sbjct: 702 YGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAY 761

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           ++   +      P + T+ +MI  +GKA    K   + ++M A    P+F+TY  +I   
Sbjct: 762 RLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHC 821

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                +  A ++ DE+ +      ++    ++E +          LL E + N+ V P  
Sbjct: 822 CAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGF-NREFIISLGLLDEIAENVAV-PII 879

Query: 297 STYKLLYKAYTKANMKELVQKLLKRM 322
             Y++L  ++ KA   EL  +L K M
Sbjct: 880 PAYRILIDSFCKAGRLELALELHKEM 905



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/355 (21%), Positives = 141/355 (39%), Gaps = 49/355 (13%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
            + ++ K G+ R A+ L  +      + D  +Y  +I+       +A    +A+ +  +M
Sbjct: 273 FVHLLCKAGRWREALALIEKEEF---KLDTVIYTQMISGLC----EASLFEEAMDFLSRM 325

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +    C PN+VTY ILL  C + R + +   +   +      P    +N ++ AY ++G 
Sbjct: 326 RS-SSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGD 384

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLID-------------------SYGK--------- 168
                 +L +M    C+P  + +N+LI                    +YG+         
Sbjct: 385 YSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLN 444

Query: 169 -------------RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
                           F+K   + + +M     P   T++ +I     A     A  +F+
Sbjct: 445 KVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFE 504

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
           +M +    P   TY  +I  +     + +AR+ FDE+ + G    V T  A++ AY    
Sbjct: 505 EMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKAR 564

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             + A+ LFE   + G  P+  TY  L   + K+   E   ++  RM  N  +P+
Sbjct: 565 KMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPD 619



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/369 (19%), Positives = 147/369 (39%), Gaps = 47/369 (12%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y  L+ V+G  G  R+      E+R+     D  +   L+   +    +      AL  
Sbjct: 164 VYHALLEVLGCGGNDRVPEQFLREIRDE----DKEILGKLLNVLIRKCCRNGLWNVALEE 219

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT--------- 123
             ++K +   KP+ +TYN L+R   +A  +D    + +E+ +S    D YT         
Sbjct: 220 LGRLKDLGY-KPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLC 278

Query: 124 -----------------------YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
                                  Y  ++    +  + +E    LSRM+S+ C P+++T+ 
Sbjct: 279 KAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYR 338

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
           +L+    +++   + +++   ++     P+   FNS+I  Y ++     A  + +KM   
Sbjct: 339 ILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDC 398

Query: 221 KYTPSFITYECIITMYGYCDN--------VSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
              P ++ Y  +I   G C N        +  A + + E+      +    ++ +    C
Sbjct: 399 GCQPGYVVYNILIG--GICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLC 456

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             G   +A  +     + G  PD+STY  +      A+  +    L + M+ N +VP+  
Sbjct: 457 GAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVF 516

Query: 333 FFLEALETF 341
            +   +++F
Sbjct: 517 TYTILIDSF 525


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 148/322 (45%), Gaps = 5/322 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I+   K  Q   A  + + M+  G  PD   YN +I +  + R     L  A
Sbjct: 146 DVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRR----KLGLA 201

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L    ++  ++ C P ++TY IL+ A      +++   L +E+    L PD+YTYN ++ 
Sbjct: 202 LTVLDQLL-LDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIR 260

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K GM++    +++ + S  C+PD+I++N+L+ ++  +  +D+ E++   +     +P
Sbjct: 261 GMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEP 320

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T++ +I +  +     +A  V + M   + TP   +Y+ +I+       +  A  I 
Sbjct: 321 NKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIM 380

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D +   G    +   N +L A C NG   +A  +F     MG  P+ S+Y  +  A    
Sbjct: 381 DYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSC 440

Query: 310 NMKELVQKLLKRMEQNGIVPNK 331
             +     ++  M   GI P++
Sbjct: 441 GDRSRALGMVPAMISKGIDPDE 462



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 144/323 (44%), Gaps = 13/323 (4%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DK 62
           R  + D   Y+ +I  M K+G    A  L + + + GC PD   YN L+ A L+    D+
Sbjct: 246 RGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDE 305

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            + L   +  F +      C+PN VTY+IL+ +  +   +D+  ++ K + E  L PD Y
Sbjct: 306 GEKLVAEM--FSR-----GCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTY 358

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++ A  K G +     ++  M SN C PDI+ +N ++ +  K    ++  ++F  L
Sbjct: 359 SYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKL 418

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 P + ++N+MI        + +A  +   M +    P  ITY  +I+       V
Sbjct: 419 RGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLV 478

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A  + D++ + G    V + N +L   C      +A  +F      G  P+ +TY LL
Sbjct: 479 EEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILL 538

Query: 303 YKAYTKANMK----ELVQKLLKR 321
            +    A  +    EL   L  R
Sbjct: 539 IEGIGFAGWRTEAMELANSLFSR 561



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 141/328 (42%), Gaps = 9/328 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALG 71
           Y+ LI     +G    AM L  EM   G  PD   YNA+I         ++A  L  +L 
Sbjct: 220 YTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSL- 278

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
                KG   C+P++++YNILLRA       D+   L  E+      P+  TY+ ++ + 
Sbjct: 279 ---TSKG---CEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSL 332

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G I E  SVL  M   +  PD  +++ LI +  K    D    +   ++ +   P +
Sbjct: 333 CRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDI 392

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             +N+++    K     +A  +F K+  M   P+  +Y  +I+    C + SRA  +   
Sbjct: 393 VNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPA 452

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G D    T N+++   C +GL  EA  L ++    G  P   +Y ++     K   
Sbjct: 453 MISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRR 512

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALE 339
            +    +   M + G  PN+  ++  +E
Sbjct: 513 IDDAIGMFAEMIEKGCRPNETTYILLIE 540



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 113/249 (45%), Gaps = 5/249 (2%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+++    L++     +N+++ + +  E+ ES   PD++ YN V+  + K   I+    V
Sbjct: 111 PDVILCTKLIKGFFNFKNIEKASRVM-EILESHTEPDVFAYNAVISGFCKVNQIEAATQV 169

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L+RMK+    PDI+T+N++I S   R+       V   L+     PT+ T+  +I     
Sbjct: 170 LNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIV 229

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKV 261
                +A  + ++M A    P   TY  II   G C    V RA E+   L+  G +  V
Sbjct: 230 EGGINEAMKLLEEMLARGLLPDMYTYNAIIR--GMCKEGMVERAAELITSLTSKGCEPDV 287

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            + N +L A+   G   E + L     + G  P+  TY +L  +  +    +    +LK 
Sbjct: 288 ISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKV 347

Query: 322 MEQNGIVPN 330
           M +  + P+
Sbjct: 348 MIEKELTPD 356



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/315 (18%), Positives = 133/315 (42%), Gaps = 6/315 (1%)

Query: 16  KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQK 75
           KL+    K G+   +++    + N G  PD  +   LI    + ++  KA ++ +   + 
Sbjct: 83  KLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKA-SRVMEILES 141

Query: 76  MKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG 135
                  +P++  YN ++    +   ++    +   +      PDI TYN ++ +     
Sbjct: 142 -----HTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRR 196

Query: 136 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195
            +    +VL ++  + C P +IT+ +LI++       ++  ++ + ++     P + T+N
Sbjct: 197 KLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYN 256

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
           ++I    K  +  +A  +   +T+    P  I+Y  ++  +          ++  E+   
Sbjct: 257 AIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSR 316

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
           G +    T + ++ + C  G   EA  + +      +TPD+ +Y  L  A  K    +L 
Sbjct: 317 GCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLA 376

Query: 316 QKLLKRMEQNGIVPN 330
             ++  M  NG +P+
Sbjct: 377 IGIMDYMISNGCLPD 391



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 1/213 (0%)

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD+     ++  +     I++   V+  ++S+  +PD+  +N +I  + K    +   QV
Sbjct: 111 PDVILCTKLIKGFFNFKNIEKASRVMEILESHT-EPDVFAYNAVISGFCKVNQIEAATQV 169

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
              +      P + T+N MI +    R  G A  V  ++      P+ ITY  +I     
Sbjct: 170 LNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIV 229

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              ++ A ++ +E+   G    + T NA++   C  G+   A  L  +  + G  PD  +
Sbjct: 230 EGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVIS 289

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           Y +L +A+      +  +KL+  M   G  PNK
Sbjct: 290 YNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNK 322


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 143/311 (45%), Gaps = 9/311 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    + G+   A+ LF +M+  GC PD   Y  L+ A      + +AL     +F
Sbjct: 263 YTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALK----FF 318

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           ++M   G+E   PN+ TY +L+    +   +D+   +   + E  L   +  +N ++D Y
Sbjct: 319 EEMVENGIE---PNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGY 375

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K GM+++   VL  MK N+  P+  T+N LI  + ++++ D+   +   +  +K  P L
Sbjct: 376 CKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNL 435

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+N++I    KAR+   A  +   M    + P   T+   I        V +A ++F+ 
Sbjct: 436 VTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFES 495

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           L +   +       A+++ YC     ++A LLF+     G  P+S T+ +L     K   
Sbjct: 496 LKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGK 555

Query: 312 KELVQKLLKRM 322
            E    L+  M
Sbjct: 556 VEDAMSLVDVM 566



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 133/322 (41%), Gaps = 11/322 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI    K+G    A+ +   M+ +   P+   YN LI        + K++ +A+   
Sbjct: 368 FNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFC----RKKSMDRAMALL 423

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM    +  PN+VTYN L+    +AR VD    L   + +    PD  T+   +D   K
Sbjct: 424 NKMYE-NKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCK 482

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +++   V   +K    + +   +  LID Y K + F     +FK ++     P   T
Sbjct: 483 MGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSIT 542

Query: 194 FNSMIINYGKARLQGKAE---YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           FN ++      R +GK E    +   M      P+  TY  +I       +  RA    D
Sbjct: 543 FNVLL---DGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLD 599

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           ++   G    V T  A ++AYC  G   EA+ +       G+  DS  Y +L  AY    
Sbjct: 600 QMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIG 659

Query: 311 MKELVQKLLKRMEQNGIVPNKR 332
             +    +L RM   G  P+++
Sbjct: 660 QLDSAFGVLIRMFDTGCEPSRQ 681



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 137/389 (35%), Gaps = 71/389 (18%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD------------ 61
           Y++L  V+ + G       LF +M N G  P+   +N ++ AH    +            
Sbjct: 158 YNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYFCGLM 217

Query: 62  -------------------KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
                              K   L  A   F+ M   E C  N V+Y  L+    +   +
Sbjct: 218 KFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMP-QEGCLRNEVSYTNLIHGFCEVGKI 276

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF--- 159
           D+   LF ++ E    PD+ TY  ++ A+ + G   E       M  N  +P++ T+   
Sbjct: 277 DEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVL 336

Query: 160 --------------------------------NLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
                                           N LID Y KR   +    V  S+  +K 
Sbjct: 337 IDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKV 396

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRA 245
            P   T+N +I  + + +   +A  +  KM   K +P+ +TY  +I  +G C    V  A
Sbjct: 397 CPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLI--HGLCKARVVDSA 454

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             +   + K G      T  A ++  C  G   +A  +FE+        +   Y  L   
Sbjct: 455 WRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDG 514

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           Y KA        L KRM   G  PN   F
Sbjct: 515 YCKAEKFSDAHLLFKRMLFEGCFPNSITF 543



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 144/353 (40%), Gaps = 37/353 (10%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K++   A+  +Y+ LI    K  +   A  LF  M   GC P+   +N L+   L    K
Sbjct: 497 KEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDG-LRKEGK 555

Query: 63  ---AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
              A +L   +G F         KP + TY IL+    +  + D+ N    ++  S   P
Sbjct: 556 VEDAMSLVDVMGKFDA-------KPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQP 608

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           ++ TY   + AY + G + E E ++ ++K      D   +++L+++YG     D    V 
Sbjct: 609 NVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVL 668

Query: 180 KSLMHSKEKPTLPTF---------------------NSMIINYGKARLQGKAEY-----V 213
             +  +  +P+  T+                     NS  I+   A +   A++     +
Sbjct: 669 IRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITML 728

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F+KM      P+  TY  +I      +++S A  +F+ + + G     +  N++L + C 
Sbjct: 729 FEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCK 788

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
            G+  EA  L ++           +YKLL     +   +E  +++ + +   G
Sbjct: 789 LGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCG 841



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/346 (19%), Positives = 143/346 (41%), Gaps = 20/346 (5%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNA-----LITA 55
           +  Q  +I     Y  L+ ++ + G  R A      +RNS  +   S + A     L+T 
Sbjct: 93  IHYQHGFIHTVHSYQPLLFILVRNGFLRAA----ENVRNSMIKSCVSSHEARFVLNLLTH 148

Query: 56  H-----LHTRDKAKALAKALGYFQKMKGM------ERCKPNIVTYNILLRACAQARNVDQ 104
           H     + + ++   +    G   ++  +      +  +PN++++N ++ A  +  NV  
Sbjct: 149 HEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVV 208

Query: 105 VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164
             A F  L +     D +TY  ++  Y K   + +   V   M    C  + +++  LI 
Sbjct: 209 AKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIH 268

Query: 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 224
            + +    D+  ++F  +      P +PT+  ++  + +   + +A   F++M      P
Sbjct: 269 GFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEP 328

Query: 225 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 284
           +  TY  +I  +     +    E+   + + G    V   NA+++ YC  G+  +A  + 
Sbjct: 329 NVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVL 388

Query: 285 ENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           ++     V P+S TY  L   + +    +    LL +M +N + PN
Sbjct: 389 DSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPN 434



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 142/376 (37%), Gaps = 60/376 (15%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--------------HLHT 59
           Y++LI    +K     AM L ++M  +   P+   YN LI                HL  
Sbjct: 403 YNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMI 462

Query: 60  RD-----------------KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
           +D                 K   + +A   F+ +K  +  + N   Y  L+    +A   
Sbjct: 463 KDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKE-KHAEANEFLYTALIDGYCKAEKF 521

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
              + LFK +      P+  T+N ++D   K G +++  S++  M     KP + T+ +L
Sbjct: 522 SDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTIL 581

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMK 221
           I+   +   FD+       ++ S  +P + T+ + I  Y +  RL    E V +      
Sbjct: 582 IEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGI 641

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML-----EAYCMNGL 276
              SFI Y+ ++  YG    +  A  +   +   G +    T + +L     E Y   G+
Sbjct: 642 LLDSFI-YDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGM 700

Query: 277 PTEAD---------------------LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
             + +                     +LFE     G  P+ +TY  L K   K     L 
Sbjct: 701 GLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLA 760

Query: 316 QKLLKRMEQNGIVPNK 331
            +L   M+++GI P++
Sbjct: 761 FRLFNHMKESGISPSE 776



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/252 (19%), Positives = 105/252 (41%), Gaps = 17/252 (6%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+   + D+ IY  L+   G  GQ   A  +   M ++GC P    Y+ L+   +  +  
Sbjct: 637 KEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEK-- 694

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
                    Y ++  G++    NI   N  +   A   + + +  LF+++ E    P++ 
Sbjct: 695 ---------YNKEGMGLDLNSTNISVDNANIWKIA---DFEIITMLFEKMVEQGCVPNVN 742

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY+ ++    K   +     + + MK +   P     N L+ S  K    ++  ++  S+
Sbjct: 743 TYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSM 802

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI---ITMYGYC 239
           M       L ++  ++    +   Q KAE +F+ + +  Y    + ++ +   +   GY 
Sbjct: 803 MEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWKVLLDGLVRKGYV 862

Query: 240 DNVSRAREIFDE 251
           D  S+ R+I ++
Sbjct: 863 DECSQLRDIMEK 874



 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 66/148 (44%), Gaps = 9/148 (6%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLHTRDKAKA 65
           + +   YSKLI  + K     LA  LF+ M+ SG  P  +++N+L+++   L   ++A  
Sbjct: 738 VPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALR 797

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L  ++  +  +  +E       +Y +L+    +  N ++   +F+ L       D   + 
Sbjct: 798 LLDSMMEYNHLAHLE-------SYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWK 850

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCK 153
            ++D   + G + E   +   M+   C+
Sbjct: 851 VLLDGLVRKGYVDECSQLRDIMEKTGCR 878


>gi|302753732|ref|XP_002960290.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
 gi|300171229|gb|EFJ37829.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
          Length = 546

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 146/303 (48%), Gaps = 7/303 (2%)

Query: 26  QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85
           Q  LA  L  EM      PD   ++ LI+ +     +A  L  A+G+ Q+M+     KP+
Sbjct: 40  QWELAEGLVLEMVEKDLVPDKFTFSTLISGY----GRANRLEDAMGWLQEMEA-GGIKPD 94

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           +V ++ L+    + ++  +  +LF +L  S +APD   YN +++ YGK    KE + +L+
Sbjct: 95  LVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLA 154

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
            MK     PD +++ +LI++Y + Q + + +QVF  +     +  + T N MI  YGK  
Sbjct: 155 EMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLE 214

Query: 206 LQGKAEYVFQKMT-AMKYTPSFITYECIITMYGYCDNVSRAREIFDEL-SKLGKDMKVST 263
           +   AE +F  M+  +    + +TY  +I +Y   + +S A  +F  + +K G +  V T
Sbjct: 215 MVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVIT 274

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N +L  + +     +A  L       G+ P++ TY  L   Y K    +    L K + 
Sbjct: 275 YNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLR 334

Query: 324 QNG 326
           + G
Sbjct: 335 EKG 337



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 124/249 (49%), Gaps = 2/249 (0%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+I  YN++L+   +AR  +    L  E+ E  L PD +T++ ++  YG+   +++    
Sbjct: 23  PSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDAMGW 82

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L  M++   KPD++ F+ LI+  GK + + K   +F  L  S   P    +NSMI  YGK
Sbjct: 83  LQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGK 142

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A+   +A+ +  +M      P  ++Y  +I  Y        A+++F E+   G  + V+T
Sbjct: 143 AKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTT 202

Query: 264 LNAMLEAYCMNGLPTEADLLFEN-SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
            N M++ Y    +  +A+ LF + S  +G+  +  TY  + K Y +A +      +   M
Sbjct: 203 CNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYM 262

Query: 323 E-QNGIVPN 330
           + + G+ PN
Sbjct: 263 QNKGGVEPN 271



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 144/298 (48%), Gaps = 7/298 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  I+S LI + GK      A  LFS+++ SG  PD  +YN++I  +     KAK   +A
Sbjct: 94  DLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLY----GKAKFYKEA 149

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            G   +MK      P+ V+Y IL+ A A+++   +   +F E+    +  D+ T N ++D
Sbjct: 150 QGLLAEMKEA-GLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMID 208

Query: 130 AYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH-SKE 187
            YGK  M+++ E +   M K+   + +++T+N +I  Y + +   +   VF  + +    
Sbjct: 209 VYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKGGV 268

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P + T+N+++  +G      KA  + +KM      P+ +TY  +I++YG      RA  
Sbjct: 269 EPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAF 328

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           +F  L + G +M      +M+  Y   GL   A  L E      + P  +   +L KA
Sbjct: 329 LFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKRLLEELKQPDIVPRDTAISILAKA 386



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 156/367 (42%), Gaps = 36/367 (9%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD-------- 61
           D  IY+ +I + GK    + A  L +EM+ +G  PD   Y  LI A+  ++         
Sbjct: 129 DKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVF 188

Query: 62  -----------------------KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
                                  K + +  A   F  M      + N+VTYN +++   +
Sbjct: 189 LEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKE 248

Query: 99  ARNVDQV-NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           A  + +  N  +   ++  + P++ TYN ++  +G     ++   ++ +M+    +P+ +
Sbjct: 249 AELLSEAFNVFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAV 308

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           T++ LI  YGK   +D+   +FK+L     +     + SMI+ Y +A L   A+ + +++
Sbjct: 309 TYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKRLLEEL 368

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
                 P  +  +  I++    + +  A +++    + G+  +  T  +M++ +  N   
Sbjct: 369 K----QPDIVPRDTAISILAKAEKLEEAAKLYWRSHEAGEIKESVTYKSMIQLFVRNKRS 424

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEA 337
             A  +FEN    G  PDS T  +L  AY +    E  +KL   M + G    K    + 
Sbjct: 425 KNAIDVFENMRESGFLPDSETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQM 484

Query: 338 LETFSSS 344
           L+ +  +
Sbjct: 485 LKLYGDA 491



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 100/247 (40%), Gaps = 13/247 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT--RDKAKALAKALG 71
           Y+ ++ + G   Q   AM L  +M+  G  P+   Y+ LI+ +  T   D+A  L K L 
Sbjct: 275 YNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTL- 333

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
              + KG E  +   + Y  ++    +A  V    A  K L E +  PDI   +  +   
Sbjct: 334 ---REKGFEMDE---ILYQSMIVVYERAGLV----AHAKRLLEELKQPDIVPRDTAISIL 383

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K   ++E   +  R        + +T+  +I  + + +       VF+++  S   P  
Sbjct: 384 AKAEKLEEAAKLYWRSHEAGEIKESVTYKSMIQLFVRNKRSKNAIDVFENMRESGFLPDS 443

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T   ++  YG+ R    AE ++  M     T     +  ++ +YG    +  A ++F  
Sbjct: 444 ETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQMLKLYGDARKIREAEDMFAA 503

Query: 252 LSKLGKD 258
           L   G D
Sbjct: 504 LKLEGLD 510


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 161/366 (43%), Gaps = 51/366 (13%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR    D   Y  ++  + K+G   LA+ L ++M  +  + +  ++N +I +      K 
Sbjct: 216 QRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLC----KY 271

Query: 64  KALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           + +  A+  F +M  KG+   +PN+VTYN L+            + L   + E  + P++
Sbjct: 272 RHVEVAVDLFTEMETKGI---RPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNV 328

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            T+N ++DA+ K G + E E +   M      PD IT+NLLI+ +      D+ +Q+FK 
Sbjct: 329 VTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKF 388

Query: 182 LMHSKEKPTLPTFNSMIINYGKAR---------------------------LQG------ 208
           ++     P + T+N++I  + K +                           +QG      
Sbjct: 389 MVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGD 448

Query: 209 --KAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTL 264
              A+ VF++M + +     +TY   I ++G C    +  A  IF  L K   ++ +   
Sbjct: 449 CDSAQMVFKQMVSNRVPTDIMTYS--ILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIY 506

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N M+E  C  G   EA  LF    ++ + PD  TY  +        + +    L ++M++
Sbjct: 507 NTMIEGMCKAGKVGEAWDLF---CSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKE 563

Query: 325 NGIVPN 330
           +G +PN
Sbjct: 564 DGTLPN 569



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 150/329 (45%), Gaps = 10/329 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  DT  ++ LI  +    +   A+ L  +M   GC+PD   Y  ++       D    +
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD----I 239

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             AL    KM+   R K N+V +N ++ +  + R+V+    LF E+    + P++ TYN 
Sbjct: 240 DLALNLLNKMEA-ARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNS 298

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++     G   +   +LS M   +  P+++TFN LID++ K     + E++ + ++   
Sbjct: 299 LINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRS 358

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P   T+N +I  +       +A+ +F+ M +    P+  TY  +I  +  C  V    
Sbjct: 359 IDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGV 418

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK-- 304
           E+F E+S+ G      T   +++ +   G    A ++F+   +  V  D  TY +L    
Sbjct: 419 ELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGL 478

Query: 305 -AYTKANMKELVQKLLKR--MEQNGIVPN 330
            +Y K +   ++ K L++  ME N  + N
Sbjct: 479 CSYGKLDTALVIFKYLQKSEMELNIFIYN 507



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 150/335 (44%), Gaps = 11/335 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS  I    ++ Q  LA+ + ++M   G  PD    ++L+  + H+    K ++ A
Sbjct: 117 DLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHS----KRISDA 172

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +    +M  M   KP+  T+  L+          +  AL  ++ +    PD+ TY  V++
Sbjct: 173 VALVDQMVEMGY-KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVN 231

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K G I    ++L++M++ + K +++ FN +IDS  K +  +    +F  +     +P
Sbjct: 232 GLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRP 291

Query: 190 TLPTFNSMI---INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            + T+NS+I    NYG+      A  +   M   K  P+ +T+  +I  +     +  A 
Sbjct: 292 NVVTYNSLINCLCNYGR---WSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAE 348

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           ++ +E+ +   D    T N ++  +CM+    EA  +F+   +    P+  TY  L   +
Sbjct: 349 KLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGF 408

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            K    E   +L + M Q G+V N   +   ++ F
Sbjct: 409 CKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGF 443



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 139/317 (43%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++KL++ + K  +  L + L  +M+  G   D   Y+  I        +   L+ AL   
Sbjct: 86  FNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFC----RRSQLSLALAVL 141

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM  +   +P+IVT + LL     ++ +    AL  ++ E    PD +T+  ++     
Sbjct: 142 AKMMKLGY-EPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +    E  +++ +M    C+PD++T+  +++   KR   D    +   +  ++ K  +  
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVI 260

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           FN++I +  K R    A  +F +M      P+ +TY  +I         S A  +   + 
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNML 320

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           +   +  V T NA+++A+   G   EA+ L E      + PD+ TY LL   +   N  +
Sbjct: 321 EKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLD 380

Query: 314 LVQKLLKRMEQNGIVPN 330
             +++ K M     +PN
Sbjct: 381 EAKQMFKFMVSKDCLPN 397



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 108/260 (41%), Gaps = 4/260 (1%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+IV +N LL A A+    + V +L +++    ++ D+YTY+  ++ + +   +    +V
Sbjct: 81  PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L++M     +PDI+T + L++ Y   +       +   ++    KP   TF ++I     
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKV 261
                +A  +  +M      P  +TY  ++   G C   ++  A  + +++        V
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVN--GLCKRGDIDLALNLLNKMEAARIKANV 258

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
              N ++++ C       A  LF      G+ P+  TY  L              +LL  
Sbjct: 259 VIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSN 318

Query: 322 MEQNGIVPNKRFFLEALETF 341
           M +  I PN   F   ++ F
Sbjct: 319 MLEKKINPNVVTFNALIDAF 338


>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 829

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 159/371 (42%), Gaps = 44/371 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I   GK G+   A+ LFS M++ GC P+   YN+++ A L  + + + + K L   
Sbjct: 394 YTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVL-AMLGKKSRTEDVIKVLC-- 450

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD------------- 120
            +MK +  C PN  T+N +L  C++    + VN + +E+      PD             
Sbjct: 451 -EMK-LNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYAR 508

Query: 121 ----------------------IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
                                 + TYN +++A  + G  K  ESV+  M++   KP+  +
Sbjct: 509 CGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENS 568

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           ++LL+  Y K      +E+V K +      P+     ++++   K R     E  F ++ 
Sbjct: 569 YSLLLHCYSKAGNVKGIEKVEKEIYDGHVFPSWILLRTLVLTNHKCRHLRGMERAFDQLQ 628

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
              Y P  +    +++M+      S+ARE+   + + G    + T N +++ Y   G   
Sbjct: 629 KYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREGECW 688

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           +A+ + +   N G  PD  +Y  + K + +  + +    +L  M   GI P     +   
Sbjct: 689 KAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPT----IVTY 744

Query: 339 ETFSSSLAGSQ 349
            TF S  AG +
Sbjct: 745 NTFLSGYAGME 755



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 153/319 (47%), Gaps = 11/319 (3%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S +I+  G++G    A    +E++ +G +P    YN++    L    KA    +AL   +
Sbjct: 290 STVISACGREGMLDEARKFLAELKFNGYKPGTVTYNSM----LQVFGKAGIYTEALSILK 345

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M+    C P+ VTYN L     +A  +D+  A+   +    + P+  TY  V+DAYGK 
Sbjct: 346 EMED-NNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKA 404

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G   +   + S MK   C P++ T+N ++   GK+   + + +V   +  +   P   T+
Sbjct: 405 GREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATW 464

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVSRAREIFDE 251
           N+M+        +GK  YV + +  MK   + P   T+  +I+ Y  C +   + +++ E
Sbjct: 465 NTML---AVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGE 521

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + K G    V+T NA+L A    G    A+ + ++    G  P+ ++Y LL   Y+KA  
Sbjct: 522 MVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCYSKAGN 581

Query: 312 KELVQKLLKRMEQNGIVPN 330
            + ++K+ K +    + P+
Sbjct: 582 VKGIEKVEKEIYDGHVFPS 600



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 137/325 (42%), Gaps = 8/325 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D   Y+ ++    + G+ + A+ LF +M+  G  P    YN ++  +       ++ 
Sbjct: 211 YSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYNVMLDVY---GKMGRSW 267

Query: 67  AKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            + L    +M  KG+E    +  T + ++ AC +   +D+      EL  +   P   TY
Sbjct: 268 DRILELLDEMRSKGLEL---DEFTCSTVISACGREGMLDEARKFLAELKFNGYKPGTVTY 324

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++  +GK G+  E  S+L  M+ N C PD +T+N L  +Y +    D+   V  ++  
Sbjct: 325 NSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTS 384

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P   T+ ++I  YGKA  +  A  +F  M  +   P+  TY  ++ M G       
Sbjct: 385 KGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTED 444

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
             ++  E+   G     +T N ML      G     + +     N G  PD  T+  L  
Sbjct: 445 VIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLIS 504

Query: 305 AYTKANMKELVQKLLKRMEQNGIVP 329
           AY +   +    K+   M ++G  P
Sbjct: 505 AYARCGSEVDSAKMYGEMVKSGFTP 529



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 138/318 (43%), Gaps = 5/318 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ ++AV  ++G+      +  EM+N G  PD   +N LI+A+     +  + AK  G  
Sbjct: 464 WNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGSEVDS-AKMYGEM 522

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K  G   C   + TYN LL A A+  +     ++ +++      P+  +Y+ ++  Y K
Sbjct: 523 VK-SGFTPC---VTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCYSK 578

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +K +E V   +      P  I    L+ +  K +    ME+ F  L     KP L  
Sbjct: 579 AGNVKGIEKVEKEIYDGHVFPSWILLRTLVLTNHKCRHLRGMERAFDQLQKYGYKPDLVV 638

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            NSM+  + + ++  KA  +   +      P+  TY C++ +Y       +A E+   + 
Sbjct: 639 INSMLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREGECWKAEEVLKGIQ 698

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G +  V + N +++ +C  GL  EA  +       G+ P   TY      Y    + +
Sbjct: 699 NSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAGMELFD 758

Query: 314 LVQKLLKRMEQNGIVPNK 331
              ++++ M ++   P++
Sbjct: 759 EANEVIRFMIEHNCRPSE 776



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 131/283 (46%), Gaps = 42/283 (14%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA---KALAKAL 70
           Y+ L+  + ++G  + A  +  +MR  G +P+ + Y+ L    LH   KA   K + K  
Sbjct: 534 YNALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSLL----LHCYSKAGNVKGIEKVE 589

Query: 71  -----GYF-----------------QKMKGMERC---------KPNIVTYNILLRACAQA 99
                G+                  + ++GMER          KP++V  N +L   A+ 
Sbjct: 590 KEIYDGHVFPSWILLRTLVLTNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFARN 649

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
           +   +   +   +HE  L P+++TYN +MD Y + G   + E VL  ++++  +PD++++
Sbjct: 650 KMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREGECWKAEEVLKGIQNSGPEPDVVSY 709

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
           N +I  + ++    +   V   +     +PT+ T+N+ +  Y    L  +A  V + M  
Sbjct: 710 NTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIE 769

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
               PS +TY+ ++   GYC    +  E  D +SK+ K++ +S
Sbjct: 770 HNCRPSELTYKILVD--GYC-KAGKYEEAMDFVSKI-KELDIS 808



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 114/254 (44%), Gaps = 1/254 (0%)

Query: 79  MERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-I 137
           +E+   ++  Y  +L + A+     +   LF ++ E  L P + TYN ++D YGK G   
Sbjct: 208 VEKYSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYNVMLDVYGKMGRSW 267

Query: 138 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 197
             +  +L  M+S   + D  T + +I + G+    D+  +    L  +  KP   T+NSM
Sbjct: 268 DRILELLDEMRSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYKPGTVTYNSM 327

Query: 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK 257
           +  +GKA +  +A  + ++M      P  +TY  +   Y     +     + D ++  G 
Sbjct: 328 LQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTSKGV 387

Query: 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
                T   +++AY   G   +A  LF    ++G  P+  TY  +     K +  E V K
Sbjct: 388 MPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIK 447

Query: 318 LLKRMEQNGIVPNK 331
           +L  M+ NG  PN+
Sbjct: 448 VLCEMKLNGCAPNR 461



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 77/182 (42%), Gaps = 1/182 (0%)

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
           L++   G+        ++F  +   K    +  + +++ +Y +     +A  +F KM  +
Sbjct: 185 LMVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEI 244

Query: 221 KYTPSFITYECIITMYGYCD-NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
              P+ +TY  ++ +YG    +  R  E+ DE+   G ++   T + ++ A    G+  E
Sbjct: 245 GLDPTLVTYNVMLDVYGKMGRSWDRILELLDEMRSKGLELDEFTCSTVISACGREGMLDE 304

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
           A          G  P + TY  + + + KA +      +LK ME N   P+   + E   
Sbjct: 305 ARKFLAELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAA 364

Query: 340 TF 341
           T+
Sbjct: 365 TY 366


>gi|125537564|gb|EAY84052.1| hypothetical protein OsI_39281 [Oryza sativa Indica Group]
          Length = 762

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 144/329 (43%), Gaps = 40/329 (12%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQK   Y  D   Y  LI +  K G   +AM L++ M+  G  PD   Y+A++       
Sbjct: 427 MQKAG-YEPDRVTYCTLIDIHAKGGYLEVAMDLYTRMQEVGLSPDTFTYSAMVNC----L 481

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K   LA A   F +M     C PN+VTYNI++   A+ARN + V  L+K++  +   PD
Sbjct: 482 GKGGHLAAAYKLFCEMV-ENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPD 540

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TY+ VM+  G  G + E E+V   M+ +   PD   + LL+D +GK    DK    + 
Sbjct: 541 KITYSIVMEVLGHCGHLDEAEAVFIEMRHDWA-PDEPVYGLLVDLWGKAGNVDKALGWYH 599

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT------ 234
           +++    +P +PT NS++  + K      A  V Q M A    PS  TY  +++      
Sbjct: 600 AMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLLSCCTEAQ 659

Query: 235 -MYGYC-------------------------DNV-SRAREIFDELSKLGKDMKVSTLNAM 267
              G C                          NV    R   D +    ++ K   ++A+
Sbjct: 660 AQMGLCCQLMAITGHPAHMFLLYLPDAEPGGQNVRDHTRYFLDMMHSEDRESKRGLMDAV 719

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDS 296
           ++    +GL  EA  ++E +    V PDS
Sbjct: 720 IDFLHKSGLKEEAGFIWEVAAQRNVYPDS 748



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 150/314 (47%), Gaps = 10/314 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q  +  D   Y+ +I ++G+  Q      L  EM +  C+P    YN +I    H  
Sbjct: 356 LKRQPGFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRII----HAY 411

Query: 61  DKAKALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
            +A  L +A+  F++M+  G E   P+ VTY  L+   A+   ++    L+  + E  L+
Sbjct: 412 GRANYLREAVKVFEEMQKAGYE---PDRVTYCTLIDIHAKGGYLEVAMDLYTRMQEVGLS 468

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD +TY+ +++  GK G +     +   M  N C P+++T+N++I    K + ++ + ++
Sbjct: 469 PDTFTYSAMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKL 528

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           +K +  +  +P   T++ ++   G      +AE VF +M    + P    Y  ++ ++G 
Sbjct: 529 YKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMR-HDWAPDEPVYGLLVDLWGK 587

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             NV +A   +  + + G    V T N++L A+       +A  + +N    G+ P   T
Sbjct: 588 AGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQT 647

Query: 299 YKLLYKAYTKANMK 312
           Y LL    T+A  +
Sbjct: 648 YTLLLSCCTEAQAQ 661



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 118/251 (47%), Gaps = 3/251 (1%)

Query: 81  RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140
            CKP +VTYN ++ A  +A  + +   +F+E+ ++   PD  TY  ++D + K G ++  
Sbjct: 396 HCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEVA 455

Query: 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
             + +RM+     PD  T++ +++  GK        ++F  ++ +   P L T+N MI  
Sbjct: 456 MDLYTRMQEVGLSPDTFTYSAMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIAL 515

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL-SKLGKDM 259
             KAR       +++ M    + P  ITY  ++ + G+C ++  A  +F E+      D 
Sbjct: 516 QAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRHDWAPDE 575

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            V  L  +++ +   G   +A   +      G+ P+  T   L  A+ K N  +    +L
Sbjct: 576 PVYGL--LVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVL 633

Query: 320 KRMEQNGIVPN 330
           + M   G+VP+
Sbjct: 634 QNMLAQGLVPS 644



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 17/270 (6%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           ALG+FQ +K     K +  +Y  ++    QAR    +  L  E++     P + TYN ++
Sbjct: 349 ALGFFQWLKRQPGFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRII 408

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            AYG+   ++E   V   M+    +PD +T+  LID + K    +    ++  +      
Sbjct: 409 HAYGRANYLREAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEVAMDLYTRMQEVGLS 468

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   T+++M+   GK      A  +F +M     TP+ +TY  +I +       ++AR  
Sbjct: 469 PDTFTYSAMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQ------AKARN- 521

Query: 249 FDELSKLGKDMKVS-------TLNAMLEAYCMNGLPTEADLLF-ENSHNMGVTPDSSTYK 300
           ++ + KL KDM+V+       T + ++E     G   EA+ +F E  H+    PD   Y 
Sbjct: 522 YENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRHDW--APDEPVYG 579

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           LL   + KA   +        M Q+G+ PN
Sbjct: 580 LLVDLWGKAGNVDKALGWYHAMLQDGLQPN 609



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 85/189 (44%)

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           K D  ++  +I   G+ + F  M ++   +     KPT+ T+N +I  YG+A    +A  
Sbjct: 363 KHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREAVK 422

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           VF++M    Y P  +TY  +I ++     +  A +++  + ++G      T +AM+    
Sbjct: 423 VFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEVAMDLYTRMQEVGLSPDTFTYSAMVNCLG 482

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             G    A  LF      G TP+  TY ++     KA   E V KL K M+  G  P+K 
Sbjct: 483 KGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKI 542

Query: 333 FFLEALETF 341
            +   +E  
Sbjct: 543 TYSIVMEVL 551


>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
 gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
          Length = 768

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 150/334 (44%), Gaps = 9/334 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +Q+W       Y  LI  + K G+   A+  F++M N G  PD  V+++L+   L T DK
Sbjct: 369 RQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYG-LCTVDK 427

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +   K   +F+ +   +  + N   +NIL+    +   V +   L   +    + PD+ 
Sbjct: 428 WEKAEKL--FFEVLD--QGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVI 483

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++D +   G I E   +L  M S   KPD  T+N L+  Y K +  D    +F+ +
Sbjct: 484 SYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREM 543

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN- 241
           +     P + T+N+++    +     +A+ ++  M   +      TY  I+   G C N 
Sbjct: 544 LMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRKCDIYTYTIILN--GLCRNN 601

Query: 242 -VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            V  A ++F  L      + + T+N M+ A    G   +A  LF      G+ PD  TY+
Sbjct: 602 FVDEAFKMFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYR 661

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           L+ +   K    E + +L   ME+NG  PN R  
Sbjct: 662 LIAENLIKEGSLEELDELFSAMEENGTAPNSRML 695



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 133/326 (40%), Gaps = 21/326 (6%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + K      A  +F  M + G RP+   Y  LI  +L T  K K + + L   
Sbjct: 205 YTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLST-GKWKEVVQML--- 260

Query: 74  QKMKGMERCKPNIVTYNILLR------ACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           Q+M      +P+ V Y +LL        C +ARN+      F  L    + P +  Y  +
Sbjct: 261 QEMS-THGLQPDCVIYAVLLDYLCKNGRCTEARNI------FDSLIRKGIKPHVTIYGIL 313

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  Y   G + EM S L  M  N   PD   FN++ ++Y K+   D+   +F  +     
Sbjct: 314 LHGYATEGALSEMHSFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWL 373

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRA 245
            P +  + ++I    K      A   F +M     TP    +  ++  YG C  D   +A
Sbjct: 374 SPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLV--YGLCTVDKWEKA 431

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            ++F E+   G  +  +  N ++   C  G   EA  L +    + V PD  +Y  L   
Sbjct: 432 EKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDG 491

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNK 331
           +      +   KLL  M   G+ P++
Sbjct: 492 HCLTGRIDEAAKLLDVMVSIGLKPDE 517



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 135/333 (40%), Gaps = 3/333 (0%)

Query: 3   KQRWYIADTGIYSKLI-AVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           K  W + +T I+ +L+  +   K        L   M   GC  +   YN L+    + + 
Sbjct: 120 KTGWSLNNTVIFGQLLKGLCDAKRVDEATDILLRRMPEFGCTLNVISYNILLKGLCNEKR 179

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             +AL   L +     G     PN+VTY  ++    +A+ VD+   +F+ + +  + P+ 
Sbjct: 180 AEEALE--LMHMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNN 237

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           +TY  ++  Y   G  KE+  +L  M ++  +PD + + +L+D   K     +   +F S
Sbjct: 238 HTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARNIFDS 297

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           L+    KP +  +  ++  Y       +       M     +P    +  +   Y     
Sbjct: 298 LIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHIFNIMFNAYAKKAM 357

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +  A  IFD++ +      V    A+++A C  G   +A L F    N GVTPD   +  
Sbjct: 358 IDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSS 417

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           L       +  E  +KL   +   GI  N  FF
Sbjct: 418 LVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFF 450



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 140/323 (43%), Gaps = 11/323 (3%)

Query: 2   QKQRWYIADTGI------YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA 55
           +K  + + D GI      ++ L+  + ++G+   A  L   M     RPD   YN L+  
Sbjct: 432 EKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDG 491

Query: 56  HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 115
           H  T    +A AK L     + G+   KP+  TYN LL    +AR +D   +LF+E+   
Sbjct: 492 HCLTGRIDEA-AKLLDVMVSI-GL---KPDEFTYNTLLHGYCKARRIDDAYSLFREMLMK 546

Query: 116 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 175
            L P + TYN ++    + G   E + +   M +N+ K DI T+ ++++   +    D+ 
Sbjct: 547 GLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRKCDIYTYTIILNGLCRNNFVDEA 606

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
            ++F+SL     +  + T N MI    K   +  A  +F  ++A    P   TY  I   
Sbjct: 607 FKMFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYRLIAEN 666

Query: 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
                ++    E+F  + + G       LNA++      G    A +          + +
Sbjct: 667 LIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDIGRAGVYLSKLDEKNFSLE 726

Query: 296 SSTYKLLYKAYTKANMKELVQKL 318
           +ST  +L   Y++A  ++L + L
Sbjct: 727 ASTTSMLISIYSRAEYQQLAKSL 749



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 123/290 (42%), Gaps = 5/290 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  IY+ L+  + K G+   A  +F  +   G +P  ++Y  L    LH      AL++ 
Sbjct: 271 DCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGIL----LHGYATEGALSEM 326

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
             +   M       P+   +NI+  A A+   +D+   +F ++ +  L+P +  Y  ++D
Sbjct: 327 HSFLDLMV-RNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALID 385

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A  K G + +     ++M +    PDI  F+ L+        ++K E++F  ++    + 
Sbjct: 386 ALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRL 445

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               FN ++ N  +     +A+ +   M  +   P  I+Y  ++  +     +  A ++ 
Sbjct: 446 NAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLL 505

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           D +  +G      T N +L  YC      +A  LF      G+TP   TY
Sbjct: 506 DVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTY 555



 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 66/324 (20%), Positives = 119/324 (36%), Gaps = 53/324 (16%)

Query: 60  RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN-------VDQVNALFKEL 112
           R  +  L  AL  F +M    R   ++ T+N LL   ++AR        V   N + +E 
Sbjct: 26  RSGSLGLDDALKLFDEMLTYAR-PASVRTFNRLLTVVSRARCSSASELVVSLFNRMIREC 84

Query: 113 HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR-MKSNQCKPDIITFNLLIDSYGKRQA 171
              + AP   TY  ++  + + G +K   +     +K+     + + F  L+      + 
Sbjct: 85  SVKV-APSSCTYTILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTVIFGQLLKGLCDAKR 143

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM------KYTPS 225
            D+   +    M  +   TL   +  I+  G    + +AE   + M  M       +TP+
Sbjct: 144 VDEATDILLRRM-PEFGCTLNVISYNILLKGLCN-EKRAEEALELMHMMADDGDGSHTPN 201

Query: 226 FITYECIITMYGYCDNVSRAREIFD----------------------------ELSKLGK 257
            +TY  +I        V RA+ +F                             E+ ++ +
Sbjct: 202 VVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQ 261

Query: 258 DMKVSTLN-------AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           +M    L         +L+  C NG  TEA  +F++    G+ P  + Y +L   Y    
Sbjct: 262 EMSTHGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEG 321

Query: 311 MKELVQKLLKRMEQNGIVPNKRFF 334
               +   L  M +NG+ P+   F
Sbjct: 322 ALSEMHSFLDLMVRNGVSPDHHIF 345


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 150/340 (44%), Gaps = 16/340 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI      G+ +  + +  EM   G +PD   Y +L+  +L    + +   +A
Sbjct: 272 DNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLN-YLCNNGRCR---EA 327

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
             +F  M  KG+   KPN+  Y IL+   A    + +++ L   + E+ L+PD + +N +
Sbjct: 328 RFFFDSMIRKGI---KPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNII 384

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
             AY K  MI E   + ++MK     PD++ F  LID+  K    D     F  +M+   
Sbjct: 385 FTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGV 444

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P +  FNS++          KA+  + +M      P  + +  I+        V +A+ 
Sbjct: 445 APNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQR 504

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + D + ++G    V +   ++  +C+ G   EA    +   ++G+ PD  TY  L   Y 
Sbjct: 505 LIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYC 564

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
           +A   +    + + M +NGI P        + T+S+ L G
Sbjct: 565 RAGRIDDAYGVFREMLRNGITP-------GVVTYSTILHG 597



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 116/254 (45%), Gaps = 5/254 (1%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           NIV   +L   C   R  + ++ L K + E    PD+ +YN ++  +      +E   +L
Sbjct: 129 NIVINQLLKGLCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELL 188

Query: 145 SRMKSNQ---CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
             M  +Q   C P+++++  +I+ +      DK   +F  +M    +P + T+ ++I   
Sbjct: 189 HMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGL 248

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            KA++  +AE VFQ+M      P   TY C+I  Y           + +E+S  G     
Sbjct: 249 CKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDC 308

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLK 320
            T  ++L   C NG   EA   F++    G+ P+ + Y +L   Y TK  + E+   LL 
Sbjct: 309 YTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEM-HDLLN 367

Query: 321 RMEQNGIVPNKRFF 334
            M +NG+ P+   F
Sbjct: 368 LMVENGLSPDHHIF 381



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 145/330 (43%), Gaps = 5/330 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ+    D   +  LI  + K G+   A+  F++M N G  P+  V+N+L+   L T DK
Sbjct: 405 KQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYG-LCTVDK 463

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +  AK   YF+ +   +  +P++V +N +L        V +   L   +      PD+ 
Sbjct: 464 WEK-AKEF-YFEMLN--QGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVI 519

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y  ++  +   G I E    L  M S   KPD  T+N L+  Y +    D    VF+ +
Sbjct: 520 SYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREM 579

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           + +   P + T+++++      R   +A+ ++  M       +   Y  I+      + V
Sbjct: 580 LRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCV 639

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A ++F  L      ++++T N M+ A   +G   +A  LF    + G+ PD  TY L+
Sbjct: 640 DEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLI 699

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
            +   +    E    L   ME++G  PN R
Sbjct: 700 AENLIEEGYLEEFDDLFSAMEKSGTTPNSR 729



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 10/336 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAM-WLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           K  W + +  + ++L+  +    + R AM  L   M   GC PD   YN L+    + + 
Sbjct: 122 KSGWRVNNI-VINQLLKGLCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKR 180

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             +AL + L      +G   C PN+V+Y  ++        VD+   LF E+ +  + P++
Sbjct: 181 AEEAL-ELLHMMADSQG-RSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNV 238

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TY  V+D   K  ++   E V  +M     KPD  T+N LI  Y     + ++ ++ + 
Sbjct: 239 VTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEE 298

Query: 182 LMHSKEKPTLPTFNSM---IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           +     KP   T+ S+   + N G+ R   +A + F  M      P+   Y  +I  Y  
Sbjct: 299 MSAHGLKPDCYTYGSLLNYLCNNGRCR---EARFFFDSMIRKGIKPNVAIYGILIHGYAT 355

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              +S   ++ + + + G        N +  AY    +  EA  +F      G++PD   
Sbjct: 356 KGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVN 415

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           +  L  A  K    +       +M   G+ PN   F
Sbjct: 416 FGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVF 451



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 137/357 (38%), Gaps = 48/357 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I     +GQ   A  LF EM + G +P+   Y  +I        KA+ + +A G F
Sbjct: 206 YATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLC----KAQVVDRAEGVF 261

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD-- 129
           Q+M  KG+   KP+  TYN L+          +V  + +E+    L PD YTY  +++  
Sbjct: 262 QQMIDKGV---KPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYL 318

Query: 130 ---------------------------------AYGKNGMIKEMESVLSRMKSNQCKPDI 156
                                             Y   G + EM  +L+ M  N   PD 
Sbjct: 319 CNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDH 378

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
             FN++  +Y K+   D+   +F  +      P +  F ++I    K      A   F +
Sbjct: 379 HIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQ 438

Query: 217 MTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           M      P+   +  ++  YG C  D   +A+E + E+   G    V   N +L   C  
Sbjct: 439 MMNEGVAPNIFVFNSLV--YGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTK 496

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           G   +A  L +    +G  PD  +Y  L   +      +   K L  M   G+ P++
Sbjct: 497 GQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDE 553



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 84/189 (44%), Gaps = 5/189 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+    + G+   A  +F EM  +G  P    Y+ ++     TR  ++A    
Sbjct: 552 DEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELY 611

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L      K     + NI  YNI+L   ++   VD+   LF+ L       +I T+N ++ 
Sbjct: 612 LNMITSGK-----QWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIG 666

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A  K+G  ++   + + + S    PD+ T+ L+ ++  +    ++ + +F ++  S   P
Sbjct: 667 ALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTP 726

Query: 190 TLPTFNSMI 198
                N+++
Sbjct: 727 NSRMLNALV 735



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 15/165 (9%)

Query: 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK------AEYV---FQKM---T 218
             D   ++F  L+      ++  FN ++     +R+ G+      +E V   F +M    
Sbjct: 29  GLDDALKLFDGLLTHARPASIIAFNHLLT--AVSRVSGRRSSTTESELVVSLFNRMIREC 86

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
            +K TP   TY  +I  +     +      F  + K G  +    +N +L+  C      
Sbjct: 87  TIKVTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLR 146

Query: 279 EA-DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           EA D+L +    +G TPD  +Y  L K +      E   +LL  M
Sbjct: 147 EAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMM 191


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 142/301 (47%), Gaps = 10/301 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           I++ L++    KG+   A  + +EM   GC PD  +Y +LI     T      + +A   
Sbjct: 540 IFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFST----GRVPEARHV 595

Query: 73  FQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           F  M  KG   C P+ +TY  +++  ++  NV+    + + + +S + PD + YN +MD 
Sbjct: 596 FDSMIEKG---CAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDG 652

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KP 189
           Y K   + +   V  RM ++  KP+ +TFN+L+    K    D+   +FK ++   E  P
Sbjct: 653 YVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPP 712

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           TL ++  +I   GKA    +A   FQ+M      P   TY  +I        +  A+++ 
Sbjct: 713 TLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLV 772

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +++ KLG +  V   +A++     + +   A  +F+     G  P+  TYK+L + +  A
Sbjct: 773 EDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAA 832

Query: 310 N 310
            
Sbjct: 833 G 833



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 138/324 (42%), Gaps = 11/324 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  +    +   A  LF +++ +GC P+   Y A+I   L    KA  +   L  F
Sbjct: 366 YTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLL----KAGRIEDGLKNF 421

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M G   C P   TY +++    +A+ +     +F+++ +    PD  TY  ++D + K
Sbjct: 422 EDMSG-SSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSK 480

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              + E   +L  M +   +P  +T+  ++  + K    ++ ++V   +     +P L  
Sbjct: 481 ASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFI 540

Query: 194 FNSMIINYGKARLQGKAEYVFQ---KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           F S++  Y     +G+AE  +Q   +MTA    P  I Y  +I +      V  AR +FD
Sbjct: 541 FTSLLSYYLS---KGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFD 597

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            + + G      T   +++ +   G    A  + E     GV PD   Y  L   Y K  
Sbjct: 598 SMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLE 657

Query: 311 MKELVQKLLKRMEQNGIVPNKRFF 334
             +    +  RM  +GI PN   F
Sbjct: 658 RVDQAFGVYDRMVASGIKPNAVTF 681



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 147/346 (42%), Gaps = 26/346 (7%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI---------------- 53
           D   Y+ L+A   +  +   A+ LF  + + GC+P+ + Y  +I                
Sbjct: 298 DIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFF 357

Query: 54  ---------TAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQ 104
                    T  +     +K + +A   F+K+K    C PN+V Y  ++    +A  ++ 
Sbjct: 358 DEALDVISYTTVIKGLADSKRIDEACELFEKLK-TAGCSPNVVAYTAVIDGLLKAGRIED 416

Query: 105 VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164
               F+++  S   P   TY  V+D   K  M+ +   V  +M    C PD IT+  LID
Sbjct: 417 GLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLID 476

Query: 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 224
            + K    D+  ++   ++    +PT  T+ S++  + K  +  +A+ V  +M      P
Sbjct: 477 GFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEP 536

Query: 225 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 284
               +  +++ Y        A ++  E++  G    V    ++++     G   EA  +F
Sbjct: 537 GLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVF 596

Query: 285 ENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           ++    G  PD+ TY  + + ++K    E   ++L+ M ++G+ P+
Sbjct: 597 DSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPD 642



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 133/331 (40%), Gaps = 11/331 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+    K G+    + L  +M      PD   YN L+        +A  L  AL  F
Sbjct: 267 YNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGF----SRANRLDDALELF 322

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+     CKPN  TY  +++    A+ +++  A F E      A D+ +Y  V+     
Sbjct: 323 -KLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDE------ALDVISYTTVIKGLAD 375

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +  I E   +  ++K+  C P+++ +  +ID   K    +   + F+ +  S   PT  T
Sbjct: 376 SKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTT 435

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +  +I    KA++   A  VF++M      P  ITY  +I  +     +  AR++ D + 
Sbjct: 436 YTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVML 495

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G +    T  +++  +C   +  EA  +       G  P    +  L   Y      E
Sbjct: 496 TKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAE 555

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
              ++L  M   G  P+   +   ++   S+
Sbjct: 556 EAYQVLTEMTARGCAPDVILYTSLIDLLFST 586



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 153/358 (42%), Gaps = 30/358 (8%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I+ +    +   A   F+ M ++GC PD   +  LI          KA    +G+ 
Sbjct: 58  YNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGF------CKAGQPQVGHM 111

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
              + ++R +P++  Y  ++    +A ++D    + +E+  +   PD   Y  ++D   K
Sbjct: 112 LLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCK 171

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + E   +  RM+ + C  D +TF  LI++       D+  ++++ ++    +P L  
Sbjct: 172 LGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEV 231

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDE 251
            +S+I    KA    +A  ++Q + A K   S + Y  +  M GYC    V    ++  +
Sbjct: 232 QDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSL--MDGYCKLGRVDDGLKLLLQ 289

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + +      + T N ++  +       +A  LF+   + G  P+++TY  + +    A  
Sbjct: 290 MVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDA-- 347

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFS-----SSLAGSQSGSAKTDLTRSLSTA 364
                   +RME+      K FF EAL+  S       LA S+      +L   L TA
Sbjct: 348 --------QRMEE-----AKAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKTA 392



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 152/380 (40%), Gaps = 50/380 (13%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT--AHLHT 59
           Q  + +  D  +Y+ +I    K G       +  EM  +GC PD + Y  LI     L  
Sbjct: 115 QALKRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGR 174

Query: 60  RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFK--------- 110
            D+A  L      F++M+    C  + VT+  L+ A +    +D+   L++         
Sbjct: 175 VDEAYEL------FERMR-KSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEP 227

Query: 111 ----------------------ELHESILAPDIYT----YNGVMDAYGKNGMIKEMESVL 144
                                 E++++++A  + T    YN +MD Y K G + +   +L
Sbjct: 228 YLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLL 287

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
            +M      PDI T+N+L+  + +    D   ++FK L     KP   T+ ++I     A
Sbjct: 288 LQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDA 347

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
           +   +A+  F +          I+Y  +I        +  A E+F++L   G    V   
Sbjct: 348 QRMEEAKAFFDEAL------DVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAY 401

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
            A+++     G   +    FE+       P  +TY ++     KA M     K+ ++M Q
Sbjct: 402 TAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQ 461

Query: 325 NGIVPNKRFFLEALETFSSS 344
            G VP+   +   ++ FS +
Sbjct: 462 KGCVPDTITYTTLIDGFSKA 481



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 122/320 (38%), Gaps = 10/320 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + K      A  +F +M   GC PD   Y  LI        KA  + +A    
Sbjct: 436 YTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGF----SKASKMDEARKLL 491

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             M  KG E   P  VTY  ++    +   +++   +  ++ E    P ++ +  ++  Y
Sbjct: 492 DVMLTKGPE---PTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYY 548

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
              G  +E   VL+ M +  C PD+I +  LID         +   VF S++     P  
Sbjct: 549 LSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDA 608

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+ ++I N+ K      A  + + M      P    Y  ++  Y   + V +A  ++D 
Sbjct: 609 LTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDR 668

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF-ENSHNMGVTPDSSTYKLLYKAYTKAN 310
           +   G      T N ++     +G    A  LF E      V P   +Y +L     KA 
Sbjct: 669 MVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAG 728

Query: 311 MKELVQKLLKRMEQNGIVPN 330
                    + M   GI+P 
Sbjct: 729 RVSEAFSQFQEMIDRGIIPE 748



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 6/224 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  +I    K G    A  +   M  SG  PD   YN+L+  ++    K + + +A
Sbjct: 607 DALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYV----KLERVDQA 662

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE-LHESILAPDIYTYNGVM 128
            G + +M      KPN VT+N+L+    +    D+  +LFKE L +  + P + +Y  ++
Sbjct: 663 FGVYDRMVA-SGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILI 721

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D  GK G + E  S    M      P+  T+  LI S  K     + +++ + ++     
Sbjct: 722 DGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVN 781

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 232
           P +  ++++I     + +   A  VFQ+M      P+ +TY+ +
Sbjct: 782 PDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVL 825



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 88/214 (41%), Gaps = 7/214 (3%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P++V  NI+L    +AR +D+   LF E+      P I +YN V+        + E    
Sbjct: 18  PDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKF 77

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS---KEKPTLPTFNSMIIN 200
            + M  N C+PD+I F  LI  + K        QV   L++    + +P +  + S+I  
Sbjct: 78  FNSMIDNGCEPDVIAFTTLIHGFCKA----GQPQVGHMLLNQALKRFRPDVFLYTSVIHG 133

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
           Y KA        + ++M A    P    Y  +I        V  A E+F+ + K G    
Sbjct: 134 YCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGD 193

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
             T   ++EA   +G   EA  L+      G  P
Sbjct: 194 YVTFMTLIEALSNHGKLDEACELYREMIERGYEP 227



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 5/223 (2%)

Query: 109 FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
            KE+H + L PD+   N V++   K   I +   +   M S  C+P I+++N +I     
Sbjct: 8   LKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLAS 67

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
               D+  + F S++ +  +P +  F ++I  + KA  Q +  ++       ++ P    
Sbjct: 68  IDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAG-QPQVGHMLLNQALKRFRPDVFL 126

Query: 229 YECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           Y  +I  +GYC   ++    +I +E+   G     +    +++  C  G   EA  LFE 
Sbjct: 127 YTSVI--HGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFER 184

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
               G   D  T+  L +A +     +   +L + M + G  P
Sbjct: 185 MRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEP 227



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 89/210 (42%), Gaps = 7/210 (3%)

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           ++E    L  M +    PD++  N++++   K +  DK  ++F  +     +PT+ ++N+
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDE-LS 253
           +I          +A   F  M      P  I +  +I  +G+C          + ++ L 
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLI--HGFCKAGQPQVGHMLLNQALK 118

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           +   D+ + T  +++  YC  G       + E     G  PD++ Y +L     K    +
Sbjct: 119 RFRPDVFLYT--SVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVD 176

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
              +L +RM ++G + +   F+  +E  S+
Sbjct: 177 EAYELFERMRKSGCLGDYVTFMTLIEALSN 206



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 10/112 (8%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R  I +   Y+ LI  + K G+   A  L  +M   G  PD   Y+ALIT  + +    
Sbjct: 742 DRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDS---- 797

Query: 64  KALAKALGYFQKMKGMER-CKPNIVTYNIL---LRACAQARNVDQVNALFKE 111
             +  A   FQ+M  M+R C PN VTY +L    RA  +A +++ V   F +
Sbjct: 798 SMVDTAWDVFQEM--MKRGCAPNEVTYKVLRRGFRAAGRALDLEAVKQHFSQ 847



 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 5/130 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  +GK G+   A   F EM + G  P+   Y +LI    ++  KA  + +A    
Sbjct: 717 YTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLI----YSLAKAGRIPEAKKLV 772

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M  +    P++  Y+ L+     +  VD    +F+E+ +   AP+  TY  +   +  
Sbjct: 773 EDMVKL-GVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRA 831

Query: 134 NGMIKEMESV 143
            G   ++E+V
Sbjct: 832 AGRALDLEAV 841


>gi|115482518|ref|NP_001064852.1| Os10g0476900 [Oryza sativa Japonica Group]
 gi|110289255|gb|AAP54273.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|110289256|gb|ABG66138.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113639461|dbj|BAF26766.1| Os10g0476900 [Oryza sativa Japonica Group]
 gi|215737151|dbj|BAG96080.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 599

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 9/261 (3%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           L+ ++ K    + A+ +  E+   GC+PD   YNALI+A      KA  L  A     ++
Sbjct: 283 LVDLVCKNCGPQKALEVLDELSLEGCQPDVVTYNALISASC----KAGRLNDAKFILTRL 338

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
              E  +PN  TY ILL A    R  D+V  L +++++    PD+ TYN  ++ + K G 
Sbjct: 339 AA-EGLEPNGTTYCILLHALCNMRRWDEVCDLLEDMNQVNRDPDVTTYNIFINYFCKYGH 397

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           + +   VL RM  N C PDI+T N L+++  K+   ++   + + +  +  K  L T+N+
Sbjct: 398 LDQAIDVLERMVINNCSPDIVTCNTLLNAISKKGMVEEALGIARCIRENGYKLVLITYNT 457

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSK 254
           +I    K     KA  +F +M +   +P  ITY  ++   G+C  D    A ++ +++  
Sbjct: 458 LIDALAKKAEVKKAMVLFDEMLSDGISPDDITYGSLV--MGFCKKDMADEALDLLNQMLT 515

Query: 255 LGKDMKVSTLNAMLEAYCMNG 275
           LG ++K +T   +++A C +G
Sbjct: 516 LGFEVKTTTFVMVIQALCRDG 536



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 138/350 (39%), Gaps = 40/350 (11%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I +T    ++I  + K G+   A  +   M  SG  PD    N LI A L    +   L+
Sbjct: 169 IPETKCCVRIIRGLVKTGKANKARHVLEVMVLSGGVPDTISCNMLI-AQLC---RGGQLS 224

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            AL   + M+    C P+ +T+N L+R     R  D+  + +KE       P   T   +
Sbjct: 225 SALQVLEDMR-FSGCSPSGITFNTLIRCMFNQRMYDRAISFWKEQLRLGWPPYEMTSTLL 283

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR------------------ 169
           +D   KN   ++   VL  +    C+PD++T+N LI +  K                   
Sbjct: 284 VDLVCKNCGPQKALEVLDELSLEGCQPDVVTYNALISASCKAGRLNDAKFILTRLAAEGL 343

Query: 170 -----------------QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
                            + +D++  + + +      P + T+N  I  + K     +A  
Sbjct: 344 EPNGTTYCILLHALCNMRRWDEVCDLLEDMNQVNRDPDVTTYNIFINYFCKYGHLDQAID 403

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           V ++M     +P  +T   ++        V  A  I   + + G  + + T N +++A  
Sbjct: 404 VLERMVINNCSPDIVTCNTLLNAISKKGMVEEALGIARCIRENGYKLVLITYNTLIDALA 463

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
                 +A +LF+   + G++PD  TY  L   + K +M +    LL +M
Sbjct: 464 KKAEVKKAMVLFDEMLSDGISPDDITYGSLVMGFCKKDMADEALDLLNQM 513



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 91/215 (42%), Gaps = 6/215 (2%)

Query: 112 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171
           LH  I  P+      ++    K G   +   VL  M  +   PD I+ N+LI    +   
Sbjct: 165 LHGQI--PETKCCVRIIRGLVKTGKANKARHVLEVMVLSGGVPDTISCNMLIAQLCRGGQ 222

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
                QV + +  S   P+  TFN++I      R+  +A   +++   + + P  +T   
Sbjct: 223 LSSALQVLEDMRFSGCSPSGITFNTLIRCMFNQRMYDRAISFWKEQLRLGWPPYEMTSTL 282

Query: 232 IITMYGYCDNVS--RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289
           ++ +   C N    +A E+ DELS  G    V T NA++ A C  G   +A  +      
Sbjct: 283 LVDLV--CKNCGPQKALEVLDELSLEGCQPDVVTYNALISASCKAGRLNDAKFILTRLAA 340

Query: 290 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
            G+ P+ +TY +L  A       + V  LL+ M Q
Sbjct: 341 EGLEPNGTTYCILLHALCNMRRWDEVCDLLEDMNQ 375


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 145/322 (45%), Gaps = 6/322 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  YS LI+   K G+   A+ L +EM+++G +P   +Y  L+       D    +  A
Sbjct: 229 DTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLND----VHGA 284

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  F++M+  + C+P++ TY  L+R   +A  +D+    F E+      PD    N +++
Sbjct: 285 LSLFEEMRH-QYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMIN 343

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS-YGKRQAFDKMEQVFKSLMHSKEK 188
             GK G + +   +   M + +C P ++T+N +I + +  +    ++   F+ +  S   
Sbjct: 344 FLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGIS 403

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P+  T++ +I  + K     KA  + ++M    + P    Y  +I   G       A E+
Sbjct: 404 PSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACEL 463

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F EL +            M++     G   +A  +F+  + +G  PD   Y  L     +
Sbjct: 464 FQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLAR 523

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
             M +     ++RM+++G +P+
Sbjct: 524 TGMLDEALSTMRRMQEHGCIPD 545



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 133/299 (44%), Gaps = 6/299 (2%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T IY+ L+A+  K      A+ LF EMR+  CRPD   Y  LI        KA  + +A 
Sbjct: 265 TKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRG----LGKAGRIDEAY 320

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
            +F +M+  E C+P+ +  N ++    +A  +D    LF+E+      P + TYN ++ A
Sbjct: 321 HFFYEMQ-REGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKA 379

Query: 131 -YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +       E+ S   RMK +   P   T+++LID + K    +K   + + +      P
Sbjct: 380 LFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPP 439

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               + S+I   GKA+    A  +FQ++     + S   Y  +I   G    +  A  +F
Sbjct: 440 CPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMF 499

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           DE++KLG    V   NA++      G+  EA          G  PD ++Y ++     K
Sbjct: 500 DEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLQK 558



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 137/314 (43%), Gaps = 9/314 (2%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S+++ ++G       A+ +F +++   C+P    YN++I   +H         K    + 
Sbjct: 163 SEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMH----EGQYEKVHELYN 218

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M     C P+ +TY+ L+ A  +    D    L  E+ ++ + P    Y  ++  + K 
Sbjct: 219 EMSTEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKL 278

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
             +    S+   M+   C+PD+ T+  LI   GK    D+    F  +     +P     
Sbjct: 279 NDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVM 338

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI---FDE 251
           N+MI   GKA     A  +FQ+M  ++  PS +TY  II      ++ SRA E+   F+ 
Sbjct: 339 NNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIK--ALFESKSRASEVPSWFER 396

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G      T + +++ +C      +A +L E     G  P  + Y  L  A  KA  
Sbjct: 397 MKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKR 456

Query: 312 KELVQKLLKRMEQN 325
            +L  +L + +++N
Sbjct: 457 YDLACELFQELKEN 470



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 147/334 (44%), Gaps = 16/334 (4%)

Query: 3   KQRWYIADTGIYSKLI---AVMGKKGQTRLAMW-LFSEM-RNSGCRPDPSVYNALITAHL 57
           K+R Y  DT  Y  LI    V+ + G+    MW +  EM RN  C   P+  + ++    
Sbjct: 115 KRRNYEHDTSTYMALIHCLEVVEQYGE----MWKMIQEMVRNPICVVTPTELSEVV---- 166

Query: 58  HTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH-ESI 116
                AK ++KA+  F ++K   +C+P    YN ++         ++V+ L+ E+  E  
Sbjct: 167 RMLGNAKMVSKAIAIFYQIK-TRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGH 225

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
             PD  TY+ ++ A+ K G       +L+ MK N  +P    + +L+  + K        
Sbjct: 226 CFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGAL 285

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
            +F+ + H   +P + T+  +I   GKA    +A + F +M      P  I    +I   
Sbjct: 286 SLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFL 345

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA-YCMNGLPTEADLLFENSHNMGVTPD 295
           G    +  A ++F E+  L     V T N +++A +      +E    FE     G++P 
Sbjct: 346 GKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPS 405

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           S TY +L   + K N  E    LL+ M++ G  P
Sbjct: 406 SFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPP 439



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 81/158 (51%), Gaps = 7/158 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI    K  +   AM L  EM   G  P P+ Y +LI A      KAK    A   F
Sbjct: 409 YSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDA----LGKAKRYDLACELF 464

Query: 74  QKMKGMERC-KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           Q++K  E C   +   Y ++++   +A  +D    +F E+++   APD+Y YN +M    
Sbjct: 465 QELK--ENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLA 522

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170
           + GM+ E  S + RM+ + C PDI ++N++++   K++
Sbjct: 523 RTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLQKQE 560



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 43/236 (18%), Positives = 94/236 (39%), Gaps = 9/236 (3%)

Query: 102 VDQVNALFKELHESILAPDIYT----YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           V+Q   ++K + E +  P         + V+   G   M+ +  ++  ++K+ +C+P   
Sbjct: 136 VEQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQ 195

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP---TFNSMIINYGKARLQGKAEYVF 214
            +N +I        ++K+ +++  +  S E    P   T++++I  + K   +  A  + 
Sbjct: 196 AYNSMIIMLMHEGQYEKVHELYNEM--STEGHCFPDTMTYSALISAFCKLGRRDSAIQLL 253

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
            +M      P+   Y  ++ ++   ++V  A  +F+E+        V T   ++      
Sbjct: 254 NEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKA 313

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           G   EA   F      G  PD+     +     KA   +   KL + M     +P+
Sbjct: 314 GRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPS 369



 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 36/181 (19%), Positives = 71/181 (39%), Gaps = 35/181 (19%)

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN-YGKARLQGKAEYV 213
           D  T+  LI      + + +M ++ + ++ +      PT  S ++   G A++  KA  +
Sbjct: 122 DTSTYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAI 181

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F ++   K  P+   Y  +I M  +     +  E+++E+S               E +C 
Sbjct: 182 FYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMST--------------EGHCF 227

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
                               PD+ TY  L  A+ K   ++   +LL  M+ NG+ P  + 
Sbjct: 228 --------------------PDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKI 267

Query: 334 F 334
           +
Sbjct: 268 Y 268


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 152/340 (44%), Gaps = 33/340 (9%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ +I  M K      A  L+SEM + G  P+   Y+ALI+           L  A+  
Sbjct: 197 MYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFF----VVGKLKDAIDL 252

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F K+  +E  KP+  T+NIL+    + R + +   +F  + +  + PD+ TYN +MD Y 
Sbjct: 253 FNKII-LENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYC 311

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTL 191
               +   +S+ + M      PDI ++N+LI+ + K +  DK   +F   MH K   P +
Sbjct: 312 LVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNE-MHCKNIIPNV 370

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVSRAREI 248
            T+NS+I    K+   G+  Y  Q +  M      P+ +TY  II        V +A  +
Sbjct: 371 VTYNSLIDGLSKS---GRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIAL 427

Query: 249 F-------------------DELSKL-GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
                               D L K+ G D+ V+T N M+  +C  GL  EA  L     
Sbjct: 428 ITKFKDQGIQPSMYTYTILIDGLCKVEGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMK 487

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           +    P++ TY++  ++    N  +  +KL + M   G++
Sbjct: 488 DSSCIPNAVTYEITIRSLLDNNENDKAEKLFREMITRGLL 527



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 135/298 (45%), Gaps = 9/298 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G+TR A+ L   +     + +  +YN +I        K K +  A   +
Sbjct: 163 YGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMC----KDKHVNDAFDLY 218

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  KG+    PN+VTY+ L+        +     LF ++    + PD YT+N ++D +
Sbjct: 219 SEMVSKGIS---PNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGF 275

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K+  +KE ++V + M      PD++T+N L+D Y   +  +  + +F ++      P +
Sbjct: 276 CKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDI 335

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            ++N +I  + K +   KA  +F +M      P+ +TY  +I        +S A ++ D+
Sbjct: 336 RSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQ 395

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +   G    + T N++++A        +A  L     + G+ P   TY +L     K 
Sbjct: 396 MHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKV 453



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 134/304 (44%), Gaps = 5/304 (1%)

Query: 26  QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85
           Q   A     ++   G   D   Y  LI    H   K      AL   Q++ G +  + N
Sbjct: 140 QIHQAFLFHDKLVALGFHLDQVSYGTLI----HGLCKVGETRAALDLLQRVDG-KLVQLN 194

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
            V YN ++    + ++V+    L+ E+    ++P++ TY+ ++  +   G +K+   + +
Sbjct: 195 AVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFN 254

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
           ++     KPD  TFN+L+D + K +   + + VF  +M     P + T+NS++  Y   +
Sbjct: 255 KIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVK 314

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
               A+ +F  M      P   +Y  +I  +     V +A  +F+E+        V T N
Sbjct: 315 EVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYN 374

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
           ++++    +G  + A  L +  H+ GV P+  TY  +  A  K +  +    L+ + +  
Sbjct: 375 SLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQ 434

Query: 326 GIVP 329
           GI P
Sbjct: 435 GIQP 438



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 113/276 (40%), Gaps = 40/276 (14%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  ++  I D   Y+ L+       +   A  +F+ M   G  PD   YN LI       
Sbjct: 290 MMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFC--- 346

Query: 61  DKAKALAKALGYFQKMKGMERCK---PNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
            K K + KA+  F +M     CK   PN+VTYN L+   +++  +     L  ++H+  +
Sbjct: 347 -KIKKVDKAMNLFNEM----HCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGV 401

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP------------------DII-- 157
            P+I TYN ++DA  K   + +  +++++ K    +P                  DI   
Sbjct: 402 PPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKVEGYDITVN 461

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           T+N++I  + K+  FD+   +   +  S   P   T+   I +        KAE +F++M
Sbjct: 462 TYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLLDNNENDKAEKLFREM 521

Query: 218 TAMKYTPSFITYEC---------IITMYGYCDNVSR 244
                     +Y C          +  + +CD+ S 
Sbjct: 522 ITRGLLNRSASYPCSSMKIHQSLTMVQHTWCDSCSH 557



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/330 (20%), Positives = 137/330 (41%), Gaps = 23/330 (6%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ LF+ +      P    +N ++ + +    K+K     L   QKM+     KPN+   
Sbjct: 70  AVSLFNRLLRQNPTPPAFEFNKILGSLV----KSKHYHTVLSLSQKME-FRGIKPNLFNC 124

Query: 90  NILLRACAQARNVD-QVNALFKELHESILAP----DIYTYNGVMDAYGKNGMIKEMESVL 144
           NIL+    Q   +  Q++  F   H+ ++A     D  +Y  ++    K G  +    +L
Sbjct: 125 NILIYCFCQLGLIPCQIHQAFL-FHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLL 183

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
            R+     + + + +N +I    K +  +    ++  ++     P + T++++I  +   
Sbjct: 184 QRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVV 243

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVS 262
                A  +F K+      P   T+  ++   G+C +  +   + +F  + K G    V 
Sbjct: 244 GKLKDAIDLFNKIILENIKPDGYTFNILVD--GFCKDRKMKEGKTVFAMMMKQGIIPDVV 301

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T N++++ YC+      A  +F      GV PD  +Y +L   + K    +    L   M
Sbjct: 302 TYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEM 361

Query: 323 EQNGIVPNKRFFLEALETFSSSLAG-SQSG 351
               I+PN       + T++S + G S+SG
Sbjct: 362 HCKNIIPN-------VVTYNSLIDGLSKSG 384



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/289 (20%), Positives = 115/289 (39%), Gaps = 39/289 (13%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           K N ++Y+          +VD   +LF  L      P  + +N ++ +  K+     + S
Sbjct: 48  KINFISYSSTSTTFHSNNDVDDAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLS 107

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGK--------RQAF---DK-------MEQV-FKSLM 183
           +  +M+    KP++   N+LI  + +         QAF   DK       ++QV + +L+
Sbjct: 108 LSQKMEFRGIKPNLFNCNILIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLI 167

Query: 184 HS---------------KEKPTLPTFNSMIIN---YG--KARLQGKAEYVFQKMTAMKYT 223
           H                +    L   N+++ N   YG  K +    A  ++ +M +   +
Sbjct: 168 HGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGIS 227

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
           P+ +TY  +I+ +     +  A ++F+++          T N +++ +C +    E   +
Sbjct: 228 PNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTV 287

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
           F      G+ PD  TY  L   Y         + +   M Q G+ P+ R
Sbjct: 288 FAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIR 336


>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
 gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 142/320 (44%), Gaps = 5/320 (1%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T  Y+ L+    K G  R A ++ SEM  SG  P+   Y+ LI A+      A+    A 
Sbjct: 341 TRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAY----GNAERWESAR 396

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
              ++M+     +PN   ++ +L +        +   + +E+ +S + PD   YN ++D 
Sbjct: 397 IVLKEMEA-SNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDT 455

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           +GK   +    +   RM S   +PD IT+N L+D + K    D+ E++F+ +M     P 
Sbjct: 456 FGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPC 515

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             TFN MI ++G        + +   M +    P+ +TY  +I +YG       A E  D
Sbjct: 516 NTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECLD 575

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           ++   G     +  NA+L AY   GL  +A   F    + G+ P       L  A+ K  
Sbjct: 576 DMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGLKPSLLALNSLINAFGKDR 635

Query: 311 MKELVQKLLKRMEQNGIVPN 330
                  +L+ M++N + P+
Sbjct: 636 RDVEAFVVLQYMKENDLKPD 655



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 160/343 (46%), Gaps = 13/343 (3%)

Query: 7   YIADTGIYSKLIAVMGK--KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           Y +D   YS +I  + K  +  + +   ++ E+       D  ++N +I       D  K
Sbjct: 230 YPSDLVNYSLIIRSLMKNNRANSSILQKIYREIDRDKLEVDVQLWNDIIVGFAKAGDLDK 289

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           AL + LG  Q   G+      +VT    L  C +    ++  A+F+E+ ++ L P    Y
Sbjct: 290 AL-EFLGVVQG-SGLSVKTATLVTVIWGLGNCGR---TEEAEAIFEEMRDNGLQPRTRAY 344

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++  Y K G++++ E V+S M+ +   P+  T++LLID+YG  + ++    V K +  
Sbjct: 345 NALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEA 404

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT---PSFITYECIITMYGYCDN 241
           S  +P    F+ ++ +Y   R +G+ +  FQ +  M+ +   P  I Y  +I  +G  + 
Sbjct: 405 SNVQPNAYVFSRILASY---RDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNC 461

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +  A   FD +   G +    T N +++ +C  G    A+ LFE     G  P ++T+ +
Sbjct: 462 LDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNI 521

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           +  ++      + V+ LL  M   G++PN   +   ++ +  S
Sbjct: 522 MINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKS 564



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 138/321 (42%), Gaps = 9/321 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI   G   +   A  +  EM  S  +P+  V++ ++ ++   RDK +        F
Sbjct: 379 YSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASY---RDKGEWQKT----F 431

Query: 74  QKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           Q ++ ME    +P+ + YN+L+    +   +D   A F  +    + PD  T+N ++D +
Sbjct: 432 QVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCH 491

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G     E +   M      P   TFN++I+S+G ++ +D ++ +  ++      P  
Sbjct: 492 CKAGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNA 551

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+ ++I  YGK+     A      M A    PS   Y  ++  Y       +A   F  
Sbjct: 552 VTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWA 611

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G    +  LN+++ A+  +    EA ++ +      + PD  TY  L KA      
Sbjct: 612 MRDDGLKPSLLALNSLINAFGKDRRDVEAFVVLQYMKENDLKPDVVTYTTLMKALILVEK 671

Query: 312 KELVQKLLKRMEQNGIVPNKR 332
            + V  + + M  +G  P+++
Sbjct: 672 FDKVPSVYEEMILSGCTPDRK 692



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 117/255 (45%), Gaps = 7/255 (2%)

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y+IL+ A  Q+  + +   L ++ +   L P   TYN ++ A  +N  I++  +++ RM+
Sbjct: 172 YSILIHALGQSEKLYEAFLLSQKQN---LTP--LTYNALISACARNNDIEKALNLICRMR 226

Query: 149 SNQCKPDIITFNLLIDSYGK--RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
            +    D++ ++L+I S  K  R     ++++++ +   K +  +  +N +I+ + KA  
Sbjct: 227 EDGYPSDLVNYSLIIRSLMKNNRANSSILQKIYREIDRDKLEVDVQLWNDIIVGFAKAGD 286

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
             KA      +     +    T   +I   G C     A  IF+E+   G   +    NA
Sbjct: 287 LDKALEFLGVVQGSGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNA 346

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           +L  Y   GL  +A+ +       GV P+  TY LL  AY  A   E  + +LK ME + 
Sbjct: 347 LLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASN 406

Query: 327 IVPNKRFFLEALETF 341
           + PN   F   L ++
Sbjct: 407 VQPNAYVFSRILASY 421


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 154/361 (42%), Gaps = 53/361 (14%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT---RDKAKAL 66
           D  +Y+ +I  + K G    A+ LF +M N G RPD  +Y +L+    ++   RD    L
Sbjct: 176 DVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLL 235

Query: 67  AKALGYFQKMKGM--ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
                     +GM   + KP+++T+N L+ A  +         L+ E+    +AP+I+TY
Sbjct: 236 ----------RGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTY 285

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
             +++ +   G + E   +   M++  C PD++ +  LI+ + K +  D   ++F  +  
Sbjct: 286 TSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQ 345

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
                   T+ ++I  +G+      A+ VF  M +    P+  TY  ++    Y   V +
Sbjct: 346 KGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKK 405

Query: 245 AREIFDELSKL---GKDMKVSTLNAMLEAYCMNGLPTEADLLFE---------------- 285
           A  IF+++ K    G    + T N +L   C NG   +A ++FE                
Sbjct: 406 ALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTI 465

Query: 286 ------------NSHNM-------GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
                       N+ N+       GV P+  TY  +     +  +K     L ++M+++G
Sbjct: 466 IIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDG 525

Query: 327 I 327
           +
Sbjct: 526 V 526



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 142/317 (44%), Gaps = 8/317 (2%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           L+    +  Q  LA     +M   G  PD   + +LI            + +A+    +M
Sbjct: 113 LMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFC----LGNRMEEAMSMVNQM 168

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
             M   KP++V Y  ++ +  +  +V+   +LF ++    + PD+  Y  +++    +G 
Sbjct: 169 VEMG-IKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGR 227

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
            ++ +S+L  M   + KPD+ITFN LID++ K   F   E+++  ++     P + T+ S
Sbjct: 228 WRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTS 287

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           +I  +       +A  +F  M      P  + Y  +I  +  C  V  A +IF E+S+ G
Sbjct: 288 LINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKG 347

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT---KANMKE 313
                 T   +++ +   G P  A  +F +  + GV P+  TY +L        K     
Sbjct: 348 LTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKAL 407

Query: 314 LVQKLLKRMEQNGIVPN 330
           ++ + +++ E +G+ PN
Sbjct: 408 MIFEDMQKREMDGVAPN 424



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 144/321 (44%), Gaps = 9/321 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++KL+ V+ K  +  + + L   ++  G   D    N L+     +     A +  LG  
Sbjct: 75  FTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLA-SSFLGKM 133

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+ G E   P+IVT+  L+        +++  ++  ++ E  + PD+  Y  ++D+  K
Sbjct: 134 MKL-GFE---PDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCK 189

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           NG +    S+  +M++   +PD++ +  L++       +   + + + +   K KP + T
Sbjct: 190 NGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVIT 249

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDE 251
           FN++I  + K      AE ++ +M  M   P+  TY  +I   G+C    V  AR++F  
Sbjct: 250 FNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLIN--GFCMEGCVDEARQMFYL 307

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G    V    +++  +C      +A  +F      G+T ++ TY  L + + +   
Sbjct: 308 METKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGK 367

Query: 312 KELVQKLLKRMEQNGIVPNKR 332
             + Q++   M   G+ PN R
Sbjct: 368 PNVAQEVFSHMVSRGVPPNIR 388



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 136/316 (43%), Gaps = 11/316 (3%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ LF+ M  S  RP PS+ +   T  L+   K K     +     ++ M     ++ T 
Sbjct: 56  ALDLFTHMVES--RPLPSIID--FTKLLNVIAKMKKFDVVINLCDHLQIMG-VSHDLYTC 110

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           N+L+    Q+      ++   ++ +    PDI T+  +++ +     ++E  S++++M  
Sbjct: 111 NLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVE 170

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI---INYGKARL 206
              KPD++ +  +IDS  K    +    +F  + +   +P +  + S++    N G+ R 
Sbjct: 171 MGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWR- 229

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
              A+ + + MT  K  P  IT+  +I  +        A E+++E+ ++     + T  +
Sbjct: 230 --DADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTS 287

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           ++  +CM G   EA  +F      G  PD   Y  L   + K    +   K+   M Q G
Sbjct: 288 LINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKG 347

Query: 327 IVPNKRFFLEALETFS 342
           +  N   +   ++ F 
Sbjct: 348 LTGNTITYTTLIQGFG 363



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 6/162 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           Q+    +T  Y+ LI   G+ G+  +A  +FS M + G  P+   YN L    LH     
Sbjct: 345 QKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVL----LHCLCYN 400

Query: 64  KALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             + KAL  F+ M  + M+   PNI TYN+LL        +++   +F+++ +  +   I
Sbjct: 401 GKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGI 460

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
            TY  ++    K G +K   ++   + S   KP+++T+  +I
Sbjct: 461 ITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMI 502



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 94/242 (38%)

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y  +LR    +   ++   LF  + ES   P I  +  +++   K      + ++   ++
Sbjct: 40  YREILRNGLHSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQ 99

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
                 D+ T NLL++ + +             +M    +P + TF S+I  +       
Sbjct: 100 IMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRME 159

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           +A  +  +M  M   P  + Y  II       +V+ A  +FD++   G    V    +++
Sbjct: 160 EAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLV 219

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
              C +G   +AD L        + PD  T+  L  A+ K       ++L   M +  I 
Sbjct: 220 NGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIA 279

Query: 329 PN 330
           PN
Sbjct: 280 PN 281


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 139/312 (44%), Gaps = 9/312 (2%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM-KGMERCKPNIVTYNI 91
           L   M   GC P+   Y+ ++       D + +  +AL  FQ M K    C PN+V YN 
Sbjct: 215 LLHRMSELGCVPNVFSYSIILKGLC---DNSMS-QRALDLFQMMAKEGGACSPNVVAYNT 270

Query: 92  LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151
           ++    +     +  +LF E+    + PD+ TYN ++DA  K   + + E VL +M +N 
Sbjct: 271 VIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNG 330

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
            +PD +T+N +I  Y       +  ++F+ +      P +   NS + +  K     +A 
Sbjct: 331 AQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAA 390

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI--FDELSKLGKDMKVSTLNAMLE 269
            +F  MTA  + P  ++Y C + ++GY      A  I  F+ +   G        N ++ 
Sbjct: 391 EIFDSMTAKGHKPDIVSY-CTL-LHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIH 448

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           AY   G+  +A L+F      GV+PD  TY  +  A+++        +   +M   GI P
Sbjct: 449 AYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQP 508

Query: 330 NKRFFLEALETF 341
           N   +   ++ F
Sbjct: 509 NTAVYHSIIQGF 520



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 131/283 (46%), Gaps = 6/283 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I    K+G+T  A  LF EM   G +PD   YN +I A      KA+A+ KA    
Sbjct: 268 YNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALC----KARAMDKAELVL 323

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M      +P+ VTYN ++   A    + +   +F+++    L P+I   N  + +  K
Sbjct: 324 RQMT-TNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCK 382

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G  KE   +   M +   KPDI+++  L+  Y     F  M  +F S+  +        
Sbjct: 383 HGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRV 442

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           FN +I  Y K  +   A  +F +M     +P  +TY  +I+ +     ++ A E F+++ 
Sbjct: 443 FNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMV 502

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT-PD 295
             G     +  +++++ +CM+G   +A  L     N G+  PD
Sbjct: 503 ARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPD 545



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 119/265 (44%), Gaps = 6/265 (2%)

Query: 82  CKPNIVTYNILLRA-CAQA---RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMI 137
           C PN+ +Y+I+L+  C  +   R +D    + KE      +P++  YN V+  + K G  
Sbjct: 224 CVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKE--GGACSPNVVAYNTVIHGFFKEGET 281

Query: 138 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 197
            +  S+   M     KPD++T+NL+ID+  K +A DK E V + +  +  +P   T+N M
Sbjct: 282 GKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCM 341

Query: 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK 257
           I  Y       +A  +F+KM +    P+ +     +           A EIFD ++  G 
Sbjct: 342 IHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGH 401

Query: 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
              + +   +L  Y   G   +   LF +  + G+  D   + +L  AY K  M +    
Sbjct: 402 KPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAML 461

Query: 318 LLKRMEQNGIVPNKRFFLEALETFS 342
           +   M+Q G+ P+   +   +  FS
Sbjct: 462 IFTEMQQQGVSPDVVTYSTVISAFS 486



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 149/332 (44%), Gaps = 10/332 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K     AD  +++ LI    K+G    AM +F+EM+  G  PD   Y+ +I+A      +
Sbjct: 432 KSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAF----SR 487

Query: 63  AKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKE-LHESILAP 119
              L  A+  F +M  +G++   PN   Y+ +++       + +   L  E +++ I  P
Sbjct: 488 MGRLTDAMEKFNQMVARGIQ---PNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRP 544

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           DI  +N V+++  K+G + +   +   +     +PD+ITF  LID Y      DK  ++ 
Sbjct: 545 DIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKIL 604

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
            ++     +  + T+++++  Y K         +F++M      P+ +TY  ++      
Sbjct: 605 DAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRA 664

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
                AR+ F E+ + G  + VS    +L   C N    EA +LF+    M V    +  
Sbjct: 665 GRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITIL 724

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             +  A  K   KE  ++L   +  +G++PN+
Sbjct: 725 NTMINAMYKVQRKEEAKELFATISASGLLPNE 756



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 133/319 (41%), Gaps = 6/319 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I  + K      A  +  +M  +G +PD   YN +I    H       L +A
Sbjct: 299 DVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMI----HGYATLGRLKEA 354

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F+KMK      PNIV  N  L +  +     +   +F  +      PDI +Y  ++ 
Sbjct: 355 AKMFRKMKS-RGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLH 413

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y   G   +M  + + MKSN    D   FN+LI +Y KR   D    +F  +      P
Sbjct: 414 GYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSP 473

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T++++I  + +      A   F +M A    P+   Y  II  +     + +A+E+ 
Sbjct: 474 DVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELV 533

Query: 250 DELSKLG-KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            E+   G     +   N+++ + C +G   +A  +F+   ++G  PD  T+  L   Y  
Sbjct: 534 SEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCL 593

Query: 309 ANMKELVQKLLKRMEQNGI 327
               +   K+L  ME  G+
Sbjct: 594 VGKMDKAFKILDAMEVVGV 612



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 120/313 (38%), Gaps = 48/313 (15%)

Query: 67  AKALGYFQKMKGMERCKPNIV-----TYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           A AL  F ++   E+  P +V     TY+IL+  C +AR  D    LF  +  + L    
Sbjct: 134 ALALALFNRV-CREQAGPRVVPLTVHTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQ 192

Query: 122 YTYNGVMDAYGKNGMIKEMESVL-SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            T + ++         +E  +VL  RM    C P++ ++++++          +   +F+
Sbjct: 193 ITASTLLKCLCYANRTEEAVNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQ 252

Query: 181 SLMHSKE----KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF---------- 226
             M +KE     P +  +N++I  + K    GKA  +F +MT     P            
Sbjct: 253 --MMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDAL 310

Query: 227 -------------------------ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
                                    +TY C+I  Y     +  A ++F ++   G    +
Sbjct: 311 CKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNI 370

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
              N+ L + C +G   EA  +F++    G  PD  +Y  L   Y        +  L   
Sbjct: 371 VICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNS 430

Query: 322 MEQNGIVPNKRFF 334
           M+ NGI  + R F
Sbjct: 431 MKSNGIAADCRVF 443



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 114/296 (38%), Gaps = 30/296 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--LHTRDKAKALA 67
           D   ++ +I  + K G+   A  +F  + + G RPD   + +LI  +  +   DKA  + 
Sbjct: 545 DIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKIL 604

Query: 68  KAL-----------------GYFQK---------MKGMER--CKPNIVTYNILLRACAQA 99
            A+                 GYF+           + M+R   KPN VTY I+L    +A
Sbjct: 605 DAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRA 664

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
                    F E+ ES     +  Y  ++    +N    E   +  ++ +   K  I   
Sbjct: 665 GRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITIL 724

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
           N +I++  K Q  ++ +++F ++  S   P   T+  MIIN  K      A  +F  M  
Sbjct: 725 NTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEK 784

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
               P       II M      +++A     ++      ++ ST + ML  +   G
Sbjct: 785 SGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRILLEASTTSLMLSLFSRKG 840


>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
 gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
          Length = 609

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 151/328 (46%), Gaps = 10/328 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D+ + + +I    + G  + AM +F +M  SGC+P  S +N LI  +   R   +++   
Sbjct: 126 DSILLNAIINAFSESGNVKEAMEIFQKMEESGCKPTTSTFNTLIKGYGIIRKPEESMK-- 183

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               + M      KPN  TYNIL+ A  + +++ +   +  ++  S + PD+ TYN +  
Sbjct: 184 --LLELMTRTTNLKPNNRTYNILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLAR 241

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           AY ++G   + ES++  M + +  P+  T  +++  Y ++    +  +V   +      P
Sbjct: 242 AYAQDGETNKAESIIVDMLNKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHP 301

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT---PSFITYECIITMYGYCDNVSRAR 246
            L  FNS+I  +      G ++ V + +T M+ +   P  IT+  I+  +     + + +
Sbjct: 302 NLVIFNSLIKGFLDI---GDSDGVDKALTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQ 358

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           EIFD++ K G +  +   + + + +   G P +A+ L       GV P+   +  +   +
Sbjct: 359 EIFDDMLKSGIEPDIHVFSILAKGFVRAGEPVKAESLLNFMSKYGVRPNVVIFTTIISGW 418

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFF 334
             A   E   K+ + M    + PN + F
Sbjct: 419 CTAGKMEKAWKVFEHMCDMDVSPNLKTF 446



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 154/328 (46%), Gaps = 12/328 (3%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T  Y+ L+A + ++ + +    L SEM  +G +PD  + NA+I A      ++  + +A+
Sbjct: 92  TVTYTALVAALTRQKRFKAISGLLSEMEETGIKPDSILLNAIINAF----SESGNVKEAM 147

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI-LAPDIYTYNGVMD 129
             FQKM+    CKP   T+N L++     R  ++   L + +  +  L P+  TYN ++ 
Sbjct: 148 EIFQKME-ESGCKPTTSTFNTLIKGYGIIRKPEESMKLLELMTRTTNLKPNNRTYNILVG 206

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A  K   IKE  +V+ +M ++  +PD++T+N L  +Y +    +K E +   +++ K  P
Sbjct: 207 ALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDGETNKAESIIVDMLNKKVNP 266

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY---GYCDNVSRAR 246
              T   ++  Y +     +A  V  +M  +   P+ + +  +I  +   G  D V +A 
Sbjct: 267 NERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFNSLIKGFLDIGDSDGVDKAL 326

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            + +E    G    V T + ++  +   G   +   +F++    G+ PD   + +L K +
Sbjct: 327 TMMEE---SGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFSILAKGF 383

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFF 334
            +A      + LL  M + G+ PN   F
Sbjct: 384 VRAGEPVKAESLLNFMSKYGVRPNVVIF 411



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 155/323 (47%), Gaps = 10/323 (3%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           +KL+ ++ ++G+ + A ++F+ +   G RP    Y AL+ A L  + + KA++  L   +
Sbjct: 61  TKLMNILVERGKPQEAQFIFNSLVEQGHRPTTVTYTALVAA-LTRQKRFKAISGLLSEME 119

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +       KP+ +  N ++ A +++ NV +   +F+++ ES   P   T+N ++  YG  
Sbjct: 120 ETG----IKPDSILLNAIINAFSESGNVKEAMEIFQKMEESGCKPTTSTFNTLIKGYGII 175

Query: 135 GMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              +E   +L  M ++   KP+  T+N+L+ +  K+++  +   V   ++ S  +P + T
Sbjct: 176 RKPEESMKLLELMTRTTNLKPNNRTYNILVGALCKKKSIKEAWNVVHQMLASGVQPDVVT 235

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDE 251
           +N++   Y +     KAE +   M   K  P+  T  C I + GYC+  N++ A  +   
Sbjct: 236 YNTLARAYAQDGETNKAESIIVDMLNKKVNPNERT--CGIIVGGYCEQGNLAEALRVVYR 293

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +  LG    +   N++++ +   G     D         GV PD  T+  +   ++ A  
Sbjct: 294 MRDLGIHPNLVIFNSLIKGFLDIGDSDGVDKALTMMEESGVKPDVITFSTIMNGWSSAGR 353

Query: 312 KELVQKLLKRMEQNGIVPNKRFF 334
            +  Q++   M ++GI P+   F
Sbjct: 354 MDKCQEIFDDMLKSGIEPDIHVF 376



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 143/314 (45%), Gaps = 7/314 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + KK   + A  +  +M  SG +PD   YN L  A+    +  KA +  +   
Sbjct: 201 YNILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDGETNKAESIIVDML 260

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K     +  PN  T  I++    +  N+ +   +   + +  + P++  +N ++  +  
Sbjct: 261 NK-----KVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFNSLIKGFLD 315

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G    ++  L+ M+ +  KPD+ITF+ +++ +      DK +++F  ++ S  +P +  
Sbjct: 316 IGDSDGVDKALTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHV 375

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           F+ +   + +A    KAE +   M+     P+ + +  II+ +     + +A ++F+ + 
Sbjct: 376 FSILAKGFVRAGEPVKAESLLNFMSKYGVRPNVVIFTTIISGWCTAGKMEKAWKVFEHMC 435

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
            +     + T   ++  Y     P  A+ + +    M V P++ST KL+ +A+    M  
Sbjct: 436 DMDVSPNLKTFETLIWGYGEAKQPWRAEEILQMMEEMNVVPENSTLKLVSEAWRSIGMVN 495

Query: 314 LVQKLLKRMEQNGI 327
             +   +R E+N I
Sbjct: 496 DAKA--ERTEENEI 507



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 119/263 (45%), Gaps = 1/263 (0%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P  VTY  L+ A  + +    ++ L  E+ E+ + PD    N +++A+ ++G +KE   
Sbjct: 89  RPTTVTYTALVAALTRQKRFKAISGLLSEMEETGIKPDSILLNAIINAFSESGNVKEAME 148

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYG-KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           +  +M+ + CKP   TFN LI  YG  R+  + M+ +      +  KP   T+N ++   
Sbjct: 149 IFQKMEESGCKPTTSTFNTLIKGYGIIRKPEESMKLLELMTRTTNLKPNNRTYNILVGAL 208

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            K +   +A  V  +M A    P  +TY  +   Y      ++A  I  ++     +   
Sbjct: 209 CKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDGETNKAESIIVDMLNKKVNPNE 268

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T   ++  YC  G   EA  +     ++G+ P+   +  L K +      + V K L  
Sbjct: 269 RTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFNSLIKGFLDIGDSDGVDKALTM 328

Query: 322 MEQNGIVPNKRFFLEALETFSSS 344
           ME++G+ P+   F   +  +SS+
Sbjct: 329 MEESGVKPDVITFSTIMNGWSSA 351



 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 31/70 (44%)

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           G P EA  +F +    G  P + TY  L  A T+    + +  LL  ME+ GI P+    
Sbjct: 71  GKPQEAQFIFNSLVEQGHRPTTVTYTALVAALTRQKRFKAISGLLSEMEETGIKPDSILL 130

Query: 335 LEALETFSSS 344
              +  FS S
Sbjct: 131 NAIINAFSES 140


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 143/327 (43%), Gaps = 9/327 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ LI    K+G   LA+ +  +MRN GC+P+   Y  L+        K   + 
Sbjct: 386 VPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFC----KLGKID 441

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +A     +M   +  KPN V +N L+ A  +   + +   +F+E+      PD+YT+N +
Sbjct: 442 EAYNVLNEMSA-DGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 500

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +    +   IK    +L  M S     + +T+N LI+++ +R    +  ++   ++    
Sbjct: 501 ISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGS 560

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRA 245
                T+NS+I    +A    KA  +F+KM    + PS I+  C I + G C +  V  A
Sbjct: 561 PLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNIS--CNILINGLCRSGMVEEA 618

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            E   E+   G    + T N+++   C  G   +   +F      G+ PD+ T+  L   
Sbjct: 619 VEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSW 678

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKR 332
             K         LL    ++G VPN R
Sbjct: 679 LCKGGFVYDACLLLDEGIEDGFVPNHR 705



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 142/351 (40%), Gaps = 29/351 (8%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + ++ IY  LI  + K  +   A+ L  EM   GC PD   +N +I   L   D+    A
Sbjct: 249 VPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILG-LCKFDRINEAA 307

Query: 68  KALG-------------YFQKMKGMERC--------------KPNIVTYNILLRACAQAR 100
           K +              Y   M G+ +               KP IV +N L+       
Sbjct: 308 KMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHG 367

Query: 101 NVDQVNALFKELHESI-LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
            +D   A+  ++  S  + PD+ TYN ++  Y K G++     VL  M++  CKP++ ++
Sbjct: 368 RLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSY 427

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
            +L+D + K    D+   V   +     KP    FN +I  + K     +A  +F++M  
Sbjct: 428 TILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPR 487

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
               P   T+  +I+     D +  A  +  ++   G      T N ++ A+   G   E
Sbjct: 488 KGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKE 547

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           A  L       G   D  TY  L K   +A   +  + L ++M ++G  P+
Sbjct: 548 ARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPS 598



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 132/297 (44%), Gaps = 11/297 (3%)

Query: 13  IYSKLIAVMG--KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           +YS  I V G  K G+   A  + +EM   G +P+   +N LI+A      K   + +A+
Sbjct: 424 VYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFC----KEHRIPEAV 479

Query: 71  GYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
             F++M  KG   CKP++ T+N L+    +   +     L +++    +  +  TYN ++
Sbjct: 480 EIFREMPRKG---CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLI 536

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           +A+ + G IKE   +++ M       D IT+N LI    +    DK   +F+ ++     
Sbjct: 537 NAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHA 596

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P+  + N +I    ++ +  +A    ++M     TP  +T+  +I        +     +
Sbjct: 597 PSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTM 656

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           F +L   G      T N ++   C  G   +A LL +     G  P+  T+ +L ++
Sbjct: 657 FRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQS 713



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 142/331 (42%), Gaps = 15/331 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           Q  Y     +Y  LI  +G  G+ +    L  +M++ G     S++ +++  +    DKA
Sbjct: 104 QNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDY----DKA 159

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNA-LFKELHESILAPDIY 122
               +      +M+ +  C+P   +YN++L       N  +V A +F ++    + P ++
Sbjct: 160 GFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSG-NCHKVAANVFYDMLSRKIPPTLF 218

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           T+  VM A+     I    S+L  M  + C P+ + +  LI S  K    ++  Q+ + +
Sbjct: 219 TFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEM 278

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--D 240
                 P   TFN +I+   K     +A  +  +M    + P  ITY  +  M G C   
Sbjct: 279 FLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYL--MNGLCKIG 336

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD-LLFENSHNMGVTPDSSTY 299
            V  A+++F  + K     ++   N ++  +  +G   +A  +L +   + G+ PD  TY
Sbjct: 337 RVDAAKDLFYRIPK----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTY 392

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             L   Y K  +  L  ++L  M   G  PN
Sbjct: 393 NSLIYGYWKEGLVGLALEVLHDMRNKGCKPN 423



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 30/197 (15%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKA 65
           +A+T  Y+ LI    ++G+ + A  L +EM   G   D   YN+LI         DKA++
Sbjct: 526 VANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARS 585

Query: 66  LAKAL---GY-------------------------FQKMKGMERCKPNIVTYNILLRACA 97
           L + +   G+                         FQK   +    P+IVT+N L+    
Sbjct: 586 LFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLC 645

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           +A  ++    +F++L    + PD  T+N +M    K G + +   +L     +   P+  
Sbjct: 646 RAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHR 705

Query: 158 TFNLLIDSYGKRQAFDK 174
           T+++L+ S   ++  D+
Sbjct: 706 TWSILLQSIIPQETLDR 722



 Score = 41.2 bits (95), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 84/196 (42%), Gaps = 18/196 (9%)

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL---PTFNSMIINYGKARLQGKAEYVF 214
            + +LI   G    F  ++++   L+  K++  +     F S++ +Y KA   G+   + 
Sbjct: 113 VYQVLIGKLGANGEFKTIDRL---LIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLM 169

Query: 215 QKM-TAMKYTPSFITYECI--ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
            +M       P+F +Y  +  I + G C  V+ A   +D LS+      + T   +++A+
Sbjct: 170 LEMRNVYSCEPTFKSYNVVLEILVSGNCHKVA-ANVFYDMLSR-KIPPTLFTFGVVMKAF 227

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           C       A  L  +    G  P+S  Y+ L  + +K N      +LL+ M   G VP+ 
Sbjct: 228 CAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDA 287

Query: 332 RFFLEALETFSSSLAG 347
                  ETF+  + G
Sbjct: 288 -------ETFNDVILG 296


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 159/363 (43%), Gaps = 22/363 (6%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+   +AD   Y+ ++    K G    A   F+EMR  GC P+   Y ALI A+L    K
Sbjct: 510 KRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYL----K 565

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILL----------RAC------AQARNVDQVN 106
           AK ++ A   F+ M   E C PNIVTY+ L+          +AC        +++V  V+
Sbjct: 566 AKKVSYANELFETMLS-EGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVD 624

Query: 107 ALFKELHE-SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
             FK+  + +   P++  Y  ++D + K   ++E   +L  M    C+P+ I ++ LID 
Sbjct: 625 MYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDG 684

Query: 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
             K    D+ ++V   +       TL T++S+I  Y K + Q  A  V  KM      P+
Sbjct: 685 LCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPN 744

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
            + Y  +I           A ++   + + G    V T  AM++ +   G       L E
Sbjct: 745 VVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLE 804

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 345
              + GV P+  TY++L     K    ++   LL+ M+Q     +   + + +E F+   
Sbjct: 805 RMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKVIEGFNKEF 864

Query: 346 AGS 348
             S
Sbjct: 865 IES 867



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 131/289 (45%), Gaps = 18/289 (6%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           KA    ++M G +   P+  TY+ +L     A  ++    LF+E+    L  D+YTY  +
Sbjct: 466 KAFSVIREMIG-QGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIM 524

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D++ K G+I++     + M+   C P+++T+  LI +Y K +      ++F++++    
Sbjct: 525 VDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGC 584

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY----------ECIITMY- 236
            P + T++++I  + KA    KA  +F++M   K  P    Y             + +Y 
Sbjct: 585 LPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYG 644

Query: 237 ----GYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
               G+C    V  AR++ D +S  G +      +A+++  C  G   EA  +       
Sbjct: 645 ALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEH 704

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
           G      TY  L   Y K   ++L  K+L +M +N   PN   + E ++
Sbjct: 705 GFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMID 753



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 139/352 (39%), Gaps = 30/352 (8%)

Query: 2   QKQRWY--IADTGI------YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI 53
           Q ++W+  + + G       Y+ LI    K  +   A  LF  M + GC P+   Y+ALI
Sbjct: 536 QARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALI 595

Query: 54  TAHLHTRDKAKALAKALGYFQKMKGMERC----------------KPNIVTYNILLRACA 97
             H     KA  + KA   F++M G +                  +PN+V Y  LL    
Sbjct: 596 DGHC----KAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFC 651

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           +   V++   L   +      P+   Y+ ++D   K G + E + V + M  +     + 
Sbjct: 652 KLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLY 711

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           T++ LID Y K +  D   +V   ++ +   P +  +  MI    K     +A  + Q M
Sbjct: 712 TYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMM 771

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
                 P+ +TY  +I  +G    +    E+ + +   G      T   +++  C NG  
Sbjct: 772 EEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGAL 831

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             A  L E          ++ Y+ + + + K  ++ L   LL  + Q+   P
Sbjct: 832 DVAHNLLEEMKQTHWPTHAAGYRKVIEGFNKEFIESL--GLLDEIGQDDTAP 881



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 154/391 (39%), Gaps = 74/391 (18%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNS-----------------GCRPDPSVYNALITAH 56
           YS LI    K GQ   A  +F  M  S                   RP+  +Y AL+   
Sbjct: 591 YSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGF 650

Query: 57  --LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE 114
             LH  ++A+ L  A+        ME C+PN + Y+ L+    +   +D+   +  E+ E
Sbjct: 651 CKLHRVEEARKLLDAMS-------MEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSE 703

Query: 115 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
                 +YTY+ ++D Y K         VLS+M  N C P+++ +  +ID   K    D+
Sbjct: 704 HGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDE 763

Query: 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY---VFQKMTAMKYTPSFITYEC 231
             ++ + +     +P + T+ +MI  +G+    GK E    + ++M +    P+++TY  
Sbjct: 764 AYKLMQMMEEKGCQPNVVTYTAMIDGFGRI---GKIETCLELLERMGSKGVAPNYVTYRV 820

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN-----GLPTEAD----- 281
           +I        +  A  + +E+ +       +    ++E +        GL  E       
Sbjct: 821 LIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKVIEGFNKEFIESLGLLDEIGQDDTA 880

Query: 282 -------LLFEN------------------SHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
                  LL +N                  + +  +   SSTY  L ++   AN  +   
Sbjct: 881 PFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVDKAF 940

Query: 317 KLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
           +L   M + G++P        ++TF S + G
Sbjct: 941 RLFSEMSKKGVIPE-------MQTFCSLIKG 964



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/380 (18%), Positives = 159/380 (41%), Gaps = 43/380 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +Q  Y   + +Y+ L+ ++ +    ++   L  ++R+     D  V+   +   +    +
Sbjct: 157 RQIGYKHTSPVYNALVDLIVRDDDEKVPEELLQQIRDD----DKEVFGEFLNVLVRKYCR 212

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL----- 117
           + + + AL    ++K   R +P+  TYN L++A  +A  +D  + + +E+  + L     
Sbjct: 213 SGSFSIALEELGRLKDF-RFRPSRSTYNCLIQAFLKADCLDSASLVHREMSLANLRMDGF 271

Query: 118 ---------------------------APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
                                       PD   Y  ++    +  + +E    L+RM++ 
Sbjct: 272 TLRCYAYSLCKVGKWREALTLMETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRAT 331

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
            C P+++T++ L+     ++   + ++V   +M     P+   FNS++  Y  +     A
Sbjct: 332 SCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYA 391

Query: 211 EYVFQKMTAMKYTPSFITYECII-TMYGYCDNVS-----RAREIFDELSKLGKDMKVSTL 264
             + +KM    +TP ++ Y  +I ++ G  D++S      A + + E+   G  +    +
Sbjct: 392 YKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINV 451

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           ++     C  G   +A  +       G  PD+STY  +      A+  EL   L + M++
Sbjct: 452 SSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKR 511

Query: 325 NGIVPNKRFFLEALETFSSS 344
            G+V +   +   +++F  +
Sbjct: 512 GGLVADVYTYTIMVDSFCKA 531



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 143/336 (42%), Gaps = 23/336 (6%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           ++ DT  Y+KLI+ + +      AM   + MR + C P+   Y+ L+   L+        
Sbjct: 298 FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNK------- 350

Query: 67  AKALGYFQK---MKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            K LG  ++   M  ME C P+   +N L+ A   + +      L K++ +    P    
Sbjct: 351 -KQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVV 409

Query: 124 YNGVMDAYGKN------GMIKEMESVLSRMKSNQC---KPDIITFNLLIDSYGKRQAFDK 174
           YN ++ +   +       +++  E   S M +      K ++ +F   + S GK   ++K
Sbjct: 410 YNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGK---YEK 466

Query: 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
              V + ++     P   T++ ++     A     A  +F++M          TY  ++ 
Sbjct: 467 AFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVD 526

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
            +     + +AR+ F+E+ ++G    V T  A++ AY      + A+ LFE   + G  P
Sbjct: 527 SFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLP 586

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +  TY  L   + KA   E   ++ +RM  +  VP+
Sbjct: 587 NIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPD 622



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 131/323 (40%), Gaps = 53/323 (16%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK---AKALAKA 69
           +Y  LI  + K G+   A  + +EM   G       Y++LI  +   + +   +K L+K 
Sbjct: 677 VYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKM 736

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L           C PN+V Y  ++    +    D+   L + + E    P++ TY  ++D
Sbjct: 737 LE--------NSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 788

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD-------KMEQ----- 177
            +G+ G I+    +L RM S    P+ +T+ +LID   K  A D       +M+Q     
Sbjct: 789 GFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPT 848

Query: 178 ---------------------VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
                                +   +      P L  +  ++ N  KA+    A  + ++
Sbjct: 849 HAAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEE 908

Query: 217 M-----TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
           +     T + Y+    TY  +I      + V +A  +F E+SK G   ++ T  ++++  
Sbjct: 909 VATFSATLVDYSS---TYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGL 965

Query: 272 CMNGLPTEADLLFENSHNMGVTP 294
             N   +EA LL +   +M V P
Sbjct: 966 FRNSKISEALLLLDFISHM-VCP 987


>gi|255661188|gb|ACU25763.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
          Length = 426

 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 5/297 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YNA+I        KAK   +
Sbjct: 42  GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFRE 97

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +M+      PN  +Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 98  ARSLISEMR-TAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMI 156

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +      
Sbjct: 157 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIV 216

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSM++ YGK     KA  + Q+M      P+ ITY  II+++G    + RA  +
Sbjct: 217 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAML 276

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           F +L   G ++       M+ AY   GL   A  L     +    P  +   +L  A
Sbjct: 277 FQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKSPDNIPRDTAIHILAGA 333



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 153/327 (46%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 1   RQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  
Sbjct: 61  SKAIS----IFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTA 115

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +
Sbjct: 116 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 175

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG     
Sbjct: 176 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEH 235

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + GV  D   Y+ +
Sbjct: 236 EKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTM 295

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  ++    +P
Sbjct: 296 IVAYERAGLVAHAKRLLHELKSPDNIP 322



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 107/214 (50%)

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           L+PD YTY+ ++  +GK G+     S L +M+ ++   D++ ++ LI+   K   + K  
Sbjct: 5   LSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAI 64

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
            +F  L  S   P L  +N+MI  +GKA+L  +A  +  +M      P+  +Y  ++TMY
Sbjct: 65  SIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMY 124

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                   A  +F E+ ++   + ++T N M++ Y   G+  EAD LF     MG+ P+ 
Sbjct: 125 VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 184

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +Y  L + Y  A +      L + M++  IV N
Sbjct: 185 VSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQN 218



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 151/360 (41%), Gaps = 42/360 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEMR +G  P+ + Y+ L+T ++     
Sbjct: 71  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVEN--- 127

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 128 -KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 187 YNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           +   +P+ IT++ +I  +GK    D+   +F+ L  S  +     + +MI+ Y +A L  
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVA 306

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++     +P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 307 HAKRLLHELK----SPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMI 362

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             +           +F+    +G  PDS+   L+  AY K +  +    +   M++ G V
Sbjct: 363 HLFSKYKKYANLIEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEMQEVGCV 422


>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
          Length = 526

 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 147/332 (44%), Gaps = 14/332 (4%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG--CRPDPSVYNALITAHLHTRDK 62
           R  I D   Y+ L+  +  + +++ A+ L   M + G  C PD   Y+ +I       D 
Sbjct: 45  RRGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDL 104

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K L             +R  PN+VTYN ++ A  +A+ VD+   +   + +S + PD  
Sbjct: 105 DKMLD------------QRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCM 152

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++  +  +G  KE    L +M+S+  +PD++T+N L+D   K     +  ++F S+
Sbjct: 153 TYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSM 212

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                KP + T+ +++  Y       +   +   M      P+   +  ++  Y   + V
Sbjct: 213 TKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKV 272

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A  +F ++ + G +    T   +++  C +G   +A L FE   + G+ PDS  Y  L
Sbjct: 273 EEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSL 332

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
             +    +  E  ++L   M   GI  +  FF
Sbjct: 333 IHSLCIFDKWEKAEELFLEMLDRGICLSTIFF 364



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 138/317 (43%), Gaps = 15/317 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +IA + K      AM + + M  SG  PD   YN+++     +    +A+     + 
Sbjct: 119 YNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIV----FL 174

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KM+  +  +P++VTYN L+    +     +   +F  + +  L PDI TY  ++  Y  
Sbjct: 175 KKMRS-DGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYAT 233

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + EM  +L  M  N   P+   F++L+ +Y K++  ++   VF  +      P   T
Sbjct: 234 KGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVT 293

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + ++I    K+     A   F++M      P  I Y  +I      D   +A E+F E+ 
Sbjct: 294 YGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEML 353

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G  +     N++++++C  G   E+  LF+    +GV PD  T              +
Sbjct: 354 DRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITL----------GRND 403

Query: 314 LVQKLLKRMEQNGIVPN 330
             + L      NG+VPN
Sbjct: 404 EAKDLFVAFSSNGLVPN 420



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 118/254 (46%), Gaps = 9/254 (3%)

Query: 79  MERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHES-ILAPDIYTYNGVMDAYGKNGM 136
           + R  P++ +YNILL   C + R+ + +  L     +     PD+ +Y+ V+     NG 
Sbjct: 44  LRRGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVI-----NGF 98

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
            KE +  L +M   +  P+++T+N +I +  K Q  DK  +V  +++ S   P   T+NS
Sbjct: 99  FKEGD--LDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNS 156

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           ++  +  +    +A    +KM +    P  +TY  ++         + AR+IFD ++K G
Sbjct: 157 IVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRG 216

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
               ++T   +L+ Y   G   E   L +     G+ P+   + +L  AY K    E   
Sbjct: 217 LKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAM 276

Query: 317 KLLKRMEQNGIVPN 330
            +  +M Q G+ PN
Sbjct: 277 LVFSKMRQQGLNPN 290



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 28/174 (16%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  +I V+ K G+   AM  F +M + G RPD  VYN+LI + L   DK +   KA   F
Sbjct: 294 YGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHS-LCIFDKWE---KAEELF 349

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNV------------------------DQVNALF 109
            +M     C   I   +I+   C + R +                        D+   LF
Sbjct: 350 LEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRNDEAKDLF 409

Query: 110 KELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
                + L P+ +TY  + +     G+++E++ +   M+ N C  D    N ++
Sbjct: 410 VAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIV 463


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 153/312 (49%), Gaps = 15/312 (4%)

Query: 14   YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
            Y+ +I+ + K  +   A+ L+  + + G  P P  Y  L+   L    KA  +  A   F
Sbjct: 846  YNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLL----KAGKMVDAENLF 901

Query: 74   QKMKGME-RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +M  +E  CKPN   YNILL     A N + V  +F+++ E  + PDI +Y  ++D   
Sbjct: 902  NEM--LEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLC 959

Query: 133  KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
              G + +  S   ++     +PD+I +NLLID  GK +  ++   +F  +      P L 
Sbjct: 960  TAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLY 1019

Query: 193  TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            T+NS+I++ GKA    +A  +++++    + P+  TY  +I  Y    +   A   +D +
Sbjct: 1020 TYNSLILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSVSGSTDNAYAAYDCV 1079

Query: 253  SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            + +G  +K + ++ +++   +N     A+ LF      G  PD  TY L+  A  K+ M+
Sbjct: 1080 A-VGVSLKTALISGLVDENLIN----IAEGLFAEMKRRGCGPDQFTYNLILDAIGKS-MR 1133

Query: 313  ELVQKLLKRMEQ 324
              ++++LK  E+
Sbjct: 1134 --IEEMLKVQEE 1143



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 146/317 (46%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L+   GKK      +WL +EM   G +P+   Y    T  +    +A    +A    
Sbjct: 216 YSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSY----TICIRVLGQAARFDEAYQIL 271

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM+    CKP++VT+ ++++    A  +     +F ++  S   PD  TY  ++D  G 
Sbjct: 272 GKMED-SGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYITLLDKCGD 330

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G  + +  + + M ++    +I+++  ++D+  +    D+   VF  +      P   +
Sbjct: 331 SGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYS 390

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS+I  + KA +  +A  +F  M A   +P+  T+   I  YG      +A + ++ + 
Sbjct: 391 YNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMK 450

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V+  NA+L +   +G    A  +F    +MGV+PD+ TY ++ K  +KA+  +
Sbjct: 451 SKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKAD 510

Query: 314 LVQKLLKRMEQNGIVPN 330
                   M + G VP+
Sbjct: 511 EAMNFFSDMVETGCVPD 527



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 157/348 (45%), Gaps = 10/348 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQKQ    A+ G ++ + + +G +G  R A      MR +G   +   YN LI    +  
Sbjct: 134 MQKQ-IVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAGMSLNGYTYNGLI----YFL 188

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K+   A+A+  ++ M   +   P++ TY++L+ +  + R+VD V  L  E+    + P+
Sbjct: 189 VKSGFDAEAMEVYKAMV-EDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPN 247

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           +Y+Y   +   G+     E   +L +M+ + CKPD++T  ++I            + VF 
Sbjct: 248 VYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFW 307

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +  S +KP   T+ +++   G +        ++  M A  Y  + ++Y  ++       
Sbjct: 308 KMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVG 367

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            +  A  +FDE+ + G   +  + N+++  +    +   A  LF + +  G +P+  T+ 
Sbjct: 368 RLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHV 427

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 348
           L    Y K+       +  + M+  GIVP+    + A     SSLA S
Sbjct: 428 LFINYYGKSGQSLKAIQRYEHMKSKGIVPD----VAAANAVLSSLARS 471



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 150/366 (40%), Gaps = 44/366 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+  I V+G+  +   A  +  +M +SGC+PD   +  +I         A  L+ A   F
Sbjct: 251 YTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVI----QVLCDAGRLSDAKDVF 306

Query: 74  QKMKG-------------MERC---------------------KPNIVTYNILLRACAQA 99
            KMK              +++C                       NIV+Y  ++ A  Q 
Sbjct: 307 WKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQV 366

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
             +D+  A+F E+ E  ++P+ Y+YN ++  + K  M      + + M +    P+  T 
Sbjct: 367 GRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTH 426

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
            L I+ YGK     K  Q ++ +      P +   N+++ +  ++   G A+ VF ++  
Sbjct: 427 VLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKD 486

Query: 220 MKYTPSFITYECIITMYGYCDNVSRARE---IFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M  +P  ITY  +I     C   S+A E    F ++ + G    V  LN++++     G 
Sbjct: 487 MGVSPDTITYTMMIKC---CSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGK 543

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
             EA  LF     M + P + TY  L     +    + V  LL+ M  +   PN   +  
Sbjct: 544 GNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNT 603

Query: 337 ALETFS 342
            L+  S
Sbjct: 604 VLDCLS 609



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 138/300 (46%), Gaps = 11/300 (3%)

Query: 11   TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
            TG Y+ LI  +  +    +A  LF+EM+  GC PD   YN ++ A      K+  + + L
Sbjct: 773  TGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDA----MGKSMRIEEML 828

Query: 71   GYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
                +M  KG E      VTYN ++    +++ ++Q   L+  L     +P   TY  ++
Sbjct: 829  RVQAEMHRKGYES---TYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLL 885

Query: 129  DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            D   K G + + E++ + M    CKP+   +N+L++ +      + + Q+F+ ++     
Sbjct: 886  DGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGIN 945

Query: 189  PTLPTFNSMIINYGKA-RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P + ++  +I     A RL     Y F+++  +   P  I Y  +I   G  + +  A  
Sbjct: 946  PDIKSYTVLIDTLCTAGRLNDGLSY-FRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVC 1004

Query: 248  IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
            +F+E+ K G    + T N+++      G  +EA  ++E     G  P+  TY  L + Y+
Sbjct: 1005 LFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYS 1064



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 116/269 (43%), Gaps = 1/269 (0%)

Query: 62   KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            K K   +A   F K KG+        +YN L+R       +D    LF E+      PD 
Sbjct: 750  KHKKALEAHQLFNKFKGL-GVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDE 808

Query: 122  YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            +TYN ++DA GK+  I+EM  V + M     +   +T+N +I    K +  ++   ++ +
Sbjct: 809  FTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYN 868

Query: 182  LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
            LM     PT  T+  ++    KA     AE +F +M      P+   Y  ++  +    N
Sbjct: 869  LMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGN 928

Query: 242  VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
                 +IF+++ + G +  + +   +++  C  G   +    F     +G+ PD   Y L
Sbjct: 929  TENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNL 988

Query: 302  LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            L     K+   E    L   M++ GIVPN
Sbjct: 989  LIDGLGKSERIEEAVCLFNEMKKKGIVPN 1017



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 124/288 (43%), Gaps = 9/288 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ ++  + + G+   A+ +F EM+  G  P+   YN+LI+  L    KA    +AL  F
Sbjct: 356 YTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFL----KADMFDRALELF 411

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL--FKELHESILAPDIYTYNGVMDAY 131
             M     C P+   Y  +L      ++   + A+  ++ +    + PD+   N V+ + 
Sbjct: 412 NHMNA---CGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSL 468

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            ++G +   + V   +K     PD IT+ ++I    K    D+    F  ++ +   P +
Sbjct: 469 ARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDV 528

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
              NS+I    K     +A  +F ++  MK  P+  TY  +++  G    V     + +E
Sbjct: 529 LALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEE 588

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           ++       + T N +L+    NG    A  +  +    G TPD S+Y
Sbjct: 589 MTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSY 636



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 10/182 (5%)

Query: 10   DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
            D  IY+ LI  +GK  +   A+ LF+EM+  G  P+   YN+LI   LH     KA   A
Sbjct: 982  DLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLI---LHLGKAGKASEAA 1038

Query: 70   LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              Y + +  ++  KPN+ TYN L+R  + + + D   A +       +A  +     ++ 
Sbjct: 1039 QMYEELL--IKGWKPNVFTYNALIRGYSVSGSTDNAYAAY-----DCVAVGVSLKTALIS 1091

Query: 130  AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
                  +I   E + + MK   C PD  T+NL++D+ GK    ++M +V + +     + 
Sbjct: 1092 GLVDENLINIAEGLFAEMKRRGCGPDQFTYNLILDAIGKSMRIEEMLKVQEEIAEDLNQL 1151

Query: 190  TL 191
            TL
Sbjct: 1152 TL 1153



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/253 (19%), Positives = 102/253 (40%), Gaps = 35/253 (13%)

Query: 92  LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151
           L+R   + +   + + LF +     ++    +YN ++       +I   E + + MK   
Sbjct: 744 LIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLG 803

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
           C PD  T+NL++D+ GK    ++M +V ++ MH K                         
Sbjct: 804 CGPDEFTYNLILDAMGKSMRIEEMLRV-QAEMHRK------------------------- 837

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
                     Y  +++TY  II+       + +A +++  L   G      T   +L+  
Sbjct: 838 ---------GYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGL 888

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
              G   +A+ LF      G  P+ + Y +L   +  A   E V ++ ++M + GI P+ 
Sbjct: 889 LKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDI 948

Query: 332 RFFLEALETFSSS 344
           + +   ++T  ++
Sbjct: 949 KSYTVLIDTLCTA 961



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 14/143 (9%)

Query: 3    KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--LHTR 60
            K++  + +   Y+ LI  +GK G+   A  ++ E+   G +P+   YNALI  +    + 
Sbjct: 1010 KKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSVSGST 1069

Query: 61   DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            D A A    +     +K              L+        ++    LF E+      PD
Sbjct: 1070 DNAYAAYDCVAVGVSLK------------TALISGLVDENLINIAEGLFAEMKRRGCGPD 1117

Query: 121  IYTYNGVMDAYGKNGMIKEMESV 143
             +TYN ++DA GK+  I+EM  V
Sbjct: 1118 QFTYNLILDAIGKSMRIEEMLKV 1140


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 149/325 (45%), Gaps = 5/325 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R Y  D    + LI  +   G+ + A++   ++   G + D   Y  LI   L    + 
Sbjct: 156 KRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLING-LCKAGET 214

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           KA+A+ L   +K++G    KP++V Y  ++    + + V     L+ E+    ++P+++T
Sbjct: 215 KAVARLL---RKLEG-HSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFT 270

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++  +   G +KE  S+L+ MK     PD+ TFN+LID+ GK    D+   +F+ + 
Sbjct: 271 YNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMK 330

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
           H    P + T+ S+I    K     +A  + +KM      P   +Y  ++        + 
Sbjct: 331 HKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLE 390

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A++ F  L   G  + V T N M+   C  GL  +   L       G  PD+ T+K + 
Sbjct: 391 NAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPDAITFKTII 450

Query: 304 KAYTKANMKELVQKLLKRMEQNGIV 328
            A  + +  +  +K L+ M   G++
Sbjct: 451 CALFEKDENDKAEKFLREMIARGLL 475



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 4/249 (1%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           PN+ T NIL+       ++    ++F  + +    PD  T N ++      G IK     
Sbjct: 126 PNLCTLNILINCFCHLAHITFAFSVFANILKRGYHPDAITLNTLIKGLCFCGEIKRALYF 185

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
             ++ +   + D +++  LI+   K      + ++ + L     KP +  + ++I    K
Sbjct: 186 HDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCK 245

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKV 261
            +  G A  ++ +M     +P+  TY  +I  YG+C   N+  A  + +E+     +  V
Sbjct: 246 NKRVGDACDLYSEMIVKGISPNVFTYNTLI--YGFCIMGNLKEAFSLLNEMKLKNINPDV 303

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T N +++A    G   EA  LFE   +  + P+  TY  L     K +  E    L K+
Sbjct: 304 YTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKK 363

Query: 322 MEQNGIVPN 330
           M++ GI P+
Sbjct: 364 MKEQGIQPD 372



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/319 (19%), Positives = 130/319 (40%), Gaps = 23/319 (7%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +  +++ + K       + LF + +++G  P+    N LI    H      A +      
Sbjct: 96  FDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCHLAHITFAFSVFANIL 155

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP----DIYTYNGVMD 129
           ++        P+ +T N L++       + +  AL+   H+ ++A     D  +Y  +++
Sbjct: 156 KRGY-----HPDAITLNTLIKGLCFCGEIKR--ALY--FHDKVVAQGFQLDQVSYGTLIN 206

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K G  K +  +L +++ +  KPD++ +  +I    K +       ++  ++     P
Sbjct: 207 GLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISP 266

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY---TPSFITYECIITMYGYCDNVSRAR 246
            + T+N++I  YG   + G  +  F  +  MK     P   T+  +I   G    +  A 
Sbjct: 267 NVFTYNTLI--YGFC-IMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAI 323

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +F+E+        + T  ++++  C N     A  L +     G+ PD  +Y +L  A 
Sbjct: 324 SLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDAL 383

Query: 307 TKA----NMKELVQKLLKR 321
            K     N K+  Q LL +
Sbjct: 384 CKGGRLENAKQFFQHLLVK 402


>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 482

 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 152/341 (44%), Gaps = 14/341 (4%)

Query: 12  GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
            I ++  A MGK  +   A+ +F  M   GC  D S +N +    L    K+K +  A  
Sbjct: 131 AIIAERYAAMGKPHR---AVTVFMSMHEYGCFQDLSSFNTI----LDVLCKSKRVEMAYN 183

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            F+ +KG  + K + V+YNI++      +   +   + KE+ E  L P++ TYN +++ Y
Sbjct: 184 LFKALKG--KFKADCVSYNIIVNGWCLIKRTPKALEMLKEMVERGLTPNLTTYNIMLNGY 241

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G   E       MK  +C  D++T+  +I   G      +   VF  ++     P++
Sbjct: 242 FRAGQTNEAWGFFLEMKKRKCDIDVVTYTSVIHGLGVVGEIKRARNVFNQMVKDGVLPSV 301

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            TFN++I    K      A  +F++M    Y P+ ITY  +I    +   + RA E+ + 
Sbjct: 302 ATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITYNLVIRGLCHVGEMQRAMELMER 361

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA-YTKAN 310
           +     +  V T N ++  +C  G   +   LF+   N    P+  TY +L  + + + N
Sbjct: 362 MEDDDCEPNVQTYNILIRYFCDAGEIEKGLDLFQKMGNGDCLPNLDTYNILINSMFVRKN 421

Query: 311 MKELV--QKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQ 349
              L+   KLL  M   G +P K  F   L+     L G+Q
Sbjct: 422 SDNLLVAGKLLVEMVDRGFLPRKLTFNRVLDGL--LLTGNQ 460



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 121/313 (38%), Gaps = 41/313 (13%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           KAL +F+ +           +++  +  CA+ R+   +  L   +    L P   T+  +
Sbjct: 74  KALHFFKILSHHPSYCHQASSFDHAIDICARLRDFRTLWFLVSRMRSCRLGPSPRTFAII 133

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL----- 182
            + Y   G      +V   M    C  D+ +FN ++D   K +  +    +FK+L     
Sbjct: 134 AERYAAMGKPHRAVTVFMSMHEYGCFQDLSSFNTILDVLCKSKRVEMAYNLFKALKGKFK 193

Query: 183 -----------------------------MHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
                                        +     P L T+N M+  Y +A    +A   
Sbjct: 194 ADCVSYNIIVNGWCLIKRTPKALEMLKEMVERGLTPNLTTYNIMLNGYFRAGQTNEAWGF 253

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F +M   K     +TY  +I   G    + RAR +F+++ K G    V+T NA+++  C 
Sbjct: 254 FLEMKKRKCDIDVVTYTSVIHGLGVVGEIKRARNVFNQMVKDGVLPSVATFNALIQILCK 313

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK-- 331
                 A L+FE     G  P+S TY L+ +        +   +L++RME +   PN   
Sbjct: 314 KDSVENAILIFEEMVKRGYVPNSITYNLVIRGLCHVGEMQRAMELMERMEDDDCEPNVQT 373

Query: 332 -----RFFLEALE 339
                R+F +A E
Sbjct: 374 YNILIRYFCDAGE 386



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 11/146 (7%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R Y+ ++  Y+ +I  +   G+ + AM L   M +  C P+   YN LI         A
Sbjct: 329 KRGYVPNSITYNLVIRGLCHVGEMQRAMELMERMEDDDCEPNVQTYNILIRYFC----DA 384

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQV---NALFKELHESILAPD 120
             + K L  FQKM G   C PN+ TYNIL+ +    +N D +     L  E+ +    P 
Sbjct: 385 GEIEKGLDLFQKM-GNGDCLPNLDTYNILINSMFVRKNSDNLLVAGKLLVEMVDRGFLPR 443

Query: 121 IYTYNGVMDAY---GKNGMIKEMESV 143
             T+N V+D     G     KE+ S+
Sbjct: 444 KLTFNRVLDGLLLTGNQDFAKEILSL 469


>gi|410110069|gb|AFV61114.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           lycioides]
          Length = 429

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 5/297 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YNA+I        KAK   +
Sbjct: 44  GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFRE 99

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +M+      PN  +Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 100 ARSLISEMR-TAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMI 158

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +      
Sbjct: 159 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIV 218

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSM++ YGK     KA  + Q+M      P+ ITY  II+++G    + RA  +
Sbjct: 219 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAML 278

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           F +L   G ++       M+ AY   GL   A  L     +    P  +   +L  A
Sbjct: 279 FQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKSPDNIPRDTAIHILAGA 335



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 153/327 (46%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 3   RQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 62

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  
Sbjct: 63  SKAIS----IFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTA 117

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +
Sbjct: 118 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 177

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG     
Sbjct: 178 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEH 237

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + GV  D   Y+ +
Sbjct: 238 EKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTM 297

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  ++    +P
Sbjct: 298 IVAYERAGLVAHAKRLLHELKSPDNIP 324



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 136/292 (46%), Gaps = 5/292 (1%)

Query: 36  EMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95
           EMR     PD   Y+ LIT H     K      AL + QKM+  +R   ++V Y+ L+  
Sbjct: 1   EMRQRALSPDRYTYSTLIT-HF---GKEGLFDAALSWLQKME-QDRVPGDLVLYSNLIEL 55

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
             +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  S++S M++    P+
Sbjct: 56  SRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPN 115

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
             +++ L+  Y + + F +   VF  +   K    L T N MI  YG+  +  +A+ +F 
Sbjct: 116 TASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFW 175

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            M  M   P+ ++Y  ++ +YG  +    A  +F  + +      V T N+M+  Y    
Sbjct: 176 GMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTL 235

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
              +A+ L +   N G+ P+S TY  +   + K    +    L +++  +G+
Sbjct: 236 EHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGV 287



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 110/220 (50%)

Query: 111 ELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170
           E+ +  L+PD YTY+ ++  +GK G+     S L +M+ ++   D++ ++ LI+   K  
Sbjct: 1   EMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 60

Query: 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
            + K   +F  L  S   P L  +N+MI  +GKA+L  +A  +  +M      P+  +Y 
Sbjct: 61  DYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYS 120

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
            ++TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF     M
Sbjct: 121 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 180

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           G+ P+  +Y  L + Y  A +      L + M++  IV N
Sbjct: 181 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQN 220



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 151/360 (41%), Gaps = 42/360 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEMR +G  P+ + Y+ L+T ++     
Sbjct: 73  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVEN--- 129

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 130 -KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 188

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 189 YNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 248

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           +   +P+ IT++ +I  +GK    D+   +F+ L  S  +     + +MI+ Y +A L  
Sbjct: 249 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVA 308

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++     +P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 309 HAKRLLHELK----SPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMI 364

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             +           +F+    +G  PDS+   L+  AY K +  +    +   M++ G V
Sbjct: 365 HLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEMQEVGCV 424


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 145/327 (44%), Gaps = 8/327 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y++LI  + + G+   A+ LF  M++  C P+   Y ALI          K + KA+G  
Sbjct: 261 YNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCR-----KNVHKAMGLL 315

Query: 74  QKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            +M  +ER   P+++TYN L+    +A ++D    L   + E  L PD  TY   +D   
Sbjct: 316 DEM--LERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLC 373

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K+  ++E   +   +       ++I +++LID Y K    D+   +F+ ++     P   
Sbjct: 374 KSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAY 433

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           TFN++I     A    +A  +F +M  M   P+  T+  +I       +   A +   ++
Sbjct: 434 TFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKM 493

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G+     T NA +E YC  G   EA+ +       GV PD  TY  L KAY K  + 
Sbjct: 494 MSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLT 553

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALE 339
                +LK M      P+   FL  ++
Sbjct: 554 YSAFDVLKSMFDADCEPSHHTFLSLIK 580



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 152/368 (41%), Gaps = 50/368 (13%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R  + D   Y+ LIA   + G    A  L S M+  G  PD   Y   I        K+
Sbjct: 320 ERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLC----KS 375

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             + +A   F  +   E    N++ Y++L+    +   VD+   LF+++     +P+ YT
Sbjct: 376 NRVEEARRLFDSLTE-EGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYT 434

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           +N ++      G +KE  S+  +M     KP + TFN+LI    K+  FD   +  + +M
Sbjct: 435 FNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMM 494

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY----- 238
            S EKP   T+N+ I  Y  A    +AE +  +M      P   TY  +I  YG      
Sbjct: 495 SSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTY 554

Query: 239 -------------CDN-----VSRAREIFDE--------------LSKLGKDMKVSTLNA 266
                        C+      +S  +++FD+              +S  G D+  S +  
Sbjct: 555 SAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFG-DVPGSNMWK 613

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           M+E      +  E   LFE     G TPDS  Y+ L     K     +  KLL +M++ G
Sbjct: 614 MMEF----DIVIE---LFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEG 666

Query: 327 IVPNKRFF 334
           I P++  F
Sbjct: 667 ISPSEMVF 674



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 154/386 (39%), Gaps = 77/386 (19%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           A+  +YS LI    K G+   A  LF +M +  C P+   +NALI    H    A  L +
Sbjct: 395 ANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALI----HGLCSAGNLKE 450

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL  F +M  M   KP + T+NIL+    +  + D  +   +++  S   P   TYN  +
Sbjct: 451 ALSLFDQMVKMGL-KPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFI 509

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQVFKSLMH 184
           + Y   G ++E E ++ +MK     PD  T+  LI +YGK      AFD    V KS+  
Sbjct: 510 EVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFD----VLKSMFD 565

Query: 185 SKEKPTLPTFNSMI---------------------INYGK---ARLQGKAEY-----VFQ 215
           +  +P+  TF S+I                      N+G    + +    E+     +F+
Sbjct: 566 ADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFE 625

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC--- 272
           +M     TP    YE +I+     +N+  A ++ D++ K G        NA++   C   
Sbjct: 626 EMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQ 685

Query: 273 ---------------------------MNGLPTEADL-----LFENSHNMGVTPDSSTYK 300
                                      + GL  E +      +F+     G   D   +K
Sbjct: 686 KYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWK 745

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNG 326
           +L     K  + E   +L + ME+NG
Sbjct: 746 ILIDGMLKQGLVEEFSQLFEEMEKNG 771



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 143/338 (42%), Gaps = 16/338 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ +I V  K G  + A     +M  +G  PD     + I  +  ++D    +  A
Sbjct: 191 DIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKD----VDSA 246

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F++M        N V+YN L+    +A  +D+  +LF  + +    P++YTY  ++ 
Sbjct: 247 FRVFEEMPNR-----NEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIK 301

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              +  + K M  +L  M      PD+IT+N LI    +    D   ++  SLM  KE+ 
Sbjct: 302 GLCRKNVHKAM-GLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLL-SLM--KERG 357

Query: 190 TLP---TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P   T+   I    K+    +A  +F  +T    + + I Y  +I  Y     V  A 
Sbjct: 358 LVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAG 417

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +F+++          T NA++   C  G   EA  LF+    MG+ P   T+ +L    
Sbjct: 418 CLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRM 477

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            K    +   K L++M  +G  P  R +   +E + S+
Sbjct: 478 LKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSA 515



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 117/258 (45%), Gaps = 7/258 (2%)

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KM   +  K ++  YN LL   A+   VD++N L+ E+ E  ++ DIYT+N +++ Y K
Sbjct: 145 RKMSKDDITKLSLKCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCK 204

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +KE +  + +M      PD  T    I  Y + +  D   +VF+ + +  E     +
Sbjct: 205 MGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNRNEV----S 260

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC-DNVSRAREIFDEL 252
           +N +I    +A    +A  +F +M      P+  TY  +I   G C  NV +A  + DE+
Sbjct: 261 YNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIK--GLCRKNVHKAMGLLDEM 318

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            +      + T N+++   C  G    A  L       G+ PD  TY        K+N  
Sbjct: 319 LERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRV 378

Query: 313 ELVQKLLKRMEQNGIVPN 330
           E  ++L   + + G+  N
Sbjct: 379 EEARRLFDSLTEEGVSAN 396



 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 9/155 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT--AHLHTRDKAKALA 67
           D+  Y KLI+ + K     +A+ L  +M+  G  P   V+NA+I+    L    +A  + 
Sbjct: 635 DSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAANIV 694

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           + +        +E CK        L+    +    ++ N++FK+L       D   +  +
Sbjct: 695 EDMICSGHSPQLEHCK-------TLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKIL 747

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           +D   K G+++E   +   M+ N C     T+++L
Sbjct: 748 IDGMLKQGLVEEFSQLFEEMEKNGCNFSPRTYSIL 782


>gi|410110101|gb|AFV61130.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           viburnoides]
          Length = 337

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 130/276 (47%), Gaps = 5/276 (1%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ +FS ++ SG  PD   YNA+I        KAK   +A     +MK      PN  +Y
Sbjct: 6   AISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFREARSLIGEMKA-AGVMPNTASY 60

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           + LL    + +   +  ++F E+ E     D+ T N ++D YG+ GM KE + +   M+ 
Sbjct: 61  STLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 120

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
              +P+++++N L+  YG  + F +   +F+ +     +  + T+NSM++ YGK     K
Sbjct: 121 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 180

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  + Q+M +    P+ ITY  II+++G    + RA  +F +L   G ++       M+ 
Sbjct: 181 ANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIV 240

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           AY   GL   A  L          P  +   +L  A
Sbjct: 241 AYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGA 276



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 129/263 (49%), Gaps = 1/263 (0%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +KA+  F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  +Y+ 
Sbjct: 4   SKAISIFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYST 62

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +    
Sbjct: 63  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG      +A 
Sbjct: 123 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 182

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G +    T + ++  +   G    A +LF+   + G   D   ++ +  AY
Sbjct: 183 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAY 242

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            +A +    ++LL  +++   +P
Sbjct: 243 ERAGLVAHAKRLLHELKRPDNIP 265



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 148/331 (44%), Gaps = 15/331 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L  EM+ +G  P+ + Y+ L+T ++     
Sbjct: 14  KRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYSTLLTMYVEN--- 70

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   +AL  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ 
Sbjct: 71  -KKFLEALSVFSEMREI-KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 128

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++  YG   +  E   +   M+    + +++T+N ++  YGK    +K   + + +
Sbjct: 129 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 188

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P   T++++I  +GK     +A  +FQK+ +       I ++ +I  Y     V
Sbjct: 189 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLV 248

Query: 243 SRAREIFDELSK---LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           + A+ +  EL +   + +D  +  L          G   EA  +F  + + G   D + +
Sbjct: 249 AHAKRLLHELKRPDNIPRDTAIHILAGA-------GRIEEATYVFRQAIDAGEVKDITVF 301

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + +    +K      V ++  +M   G  P+
Sbjct: 302 ERMIHLLSKYKKYSNVVEVFDKMRGLGYFPD 332



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 76/159 (47%)

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
           + K   +F  L  S   P L  +N+MI  +GKA+L  +A  +  +M A    P+  +Y  
Sbjct: 3   YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYST 62

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           ++TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF     MG
Sbjct: 63  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 123 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 161



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 86/189 (45%)

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           S+ SR+K +   PD++ +N +I+ +GK + F +   +   +  +   P   ++++++  Y
Sbjct: 8   SIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYSTLLTMY 67

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            + +   +A  VF +M  +K      T   +I +YG       A ++F  + K+G +  V
Sbjct: 68  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 127

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            + N +L  Y    L  EA  LF       +  +  TY  +   Y K    E    L++ 
Sbjct: 128 VSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQE 187

Query: 322 MEQNGIVPN 330
           M+  GI PN
Sbjct: 188 MQSRGIEPN 196


>gi|255661210|gb|ACU25774.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 426

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 156/327 (47%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +  +L  E+ E+ + PD  
Sbjct: 61  SKAIS----IFSRLK-RAGITPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTV 115

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV + M+  +C  D+ T N++ID YG+     + +++F S+
Sbjct: 116 SYSTLLTMYVENQKFLEALSVFAEMREIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSM 175

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG     
Sbjct: 176 RKVGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEH 235

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + GV  D   Y+ +
Sbjct: 236 EKANNLIQEMHNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTM 295

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  +++   +P
Sbjct: 296 IVAYERAGLVAHAKRLLHELKRPDNIP 322



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 108/217 (49%)

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
           E  L+PD YTY+ ++  +GK G+  +  S L +M+ ++   D++ ++ LI+   K   + 
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           K   +F  L  +   P L  +NSMI  +GKA+L  +A  +  +M      P  ++Y  ++
Sbjct: 62  KAISIFSRLKRAGITPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLL 121

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
           TMY        A  +F E+ ++   + ++T N M++ Y    +  EAD LF +   +G+ 
Sbjct: 122 TMYVENQKFLEALSVFAEMREIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIE 181

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQN 218



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 147/350 (42%), Gaps = 36/350 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I V GK    R A  L SEMR +G  PD   Y+ L+T ++      +   +A
Sbjct: 78  DLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYVEN----QKFLEA 133

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ +YN ++ 
Sbjct: 134 LSVFAEMREI-KCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVSYNTLLR 192

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YG   +  E   +   M+    + +++T+N ++  YGK    +K   + + + +   +P
Sbjct: 193 VYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNRGIEP 252

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T++++I  +GK     +A  +FQK+ +       + Y+ +I  Y     V+ A+ + 
Sbjct: 253 NAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYERAGLVAHAKRLL 312

Query: 250 DELSK-------------------------------LGKDMKVSTLNAMLEAYCMNGLPT 278
            EL +                                G+   ++    M++ +       
Sbjct: 313 HELKRPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIDLFSKYKKYP 372

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
               +FE    +G  PDS+   L+  AY K +  +    +   M+  G V
Sbjct: 373 NVVEVFEKMRGLGYFPDSNVISLVLNAYGKLHEFDXANDMYMDMQDEGCV 422


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 150/343 (43%), Gaps = 21/343 (6%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++ ++ D   Y+K+I  + +  +   A  LF EM+  G  PD   Y  LI +      KA
Sbjct: 445 RKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFC----KA 500

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             + +A  +F +M+    C PN+VTY  LL A  +++ + Q N +F  +      P+  T
Sbjct: 501 GLIEQAQSWFDEMRS-AGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAIT 559

Query: 124 YNGVMDAYGKNGMIKEMESVLSRM----------------KSNQCKPDIITFNLLIDSYG 167
           Y+ ++D   K G I++   V +++                 ++   P+++T+  L++   
Sbjct: 560 YSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLC 619

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
           K Q       +  +++ +  +P    +++++  + K      A+ VF +MT   Y PS  
Sbjct: 620 KAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVH 679

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           TY  +I        +  A ++  ++ K   +  V T  AM++  C  G   +A  L    
Sbjct: 680 TYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLM 739

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              G +P+  TY  L     KA   +   +L  +M+  G  PN
Sbjct: 740 EKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPN 782



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 145/350 (41%), Gaps = 52/350 (14%)

Query: 33  LFSEMRNSGCRPDPSVYNALITA-------------------------------HLHTRD 61
           LF+ M   GC P   VYN  I +                                ++T +
Sbjct: 363 LFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTAN 422

Query: 62  KAKALAKALGY---FQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
            A+ L     +   FQ +K M R    P+  TY  ++    QA+ VD+   LF+E+ +  
Sbjct: 423 FARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVG 482

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           + PD+YTY  ++D++ K G+I++ +S    M+S  C P+++T+  L+ +Y K +   +  
Sbjct: 483 VNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQAN 542

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK--------------- 221
            +F  ++     P   T++++I    KA    KA  V+ K+                   
Sbjct: 543 DIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTD 602

Query: 222 -YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
             +P+ +TY  ++        VS A ++ D +   G +      +A+++ +C  G    A
Sbjct: 603 TISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSA 662

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +F      G  P   TY  L     K    +L  K+L +M ++   PN
Sbjct: 663 QEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPN 712



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 135/376 (35%), Gaps = 65/376 (17%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           YI +   Y  L+    KK Q      + + M   GC P PS++N+L+    HT   A+  
Sbjct: 302 YIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLV----HTYCNAEDY 357

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILL--------------------------------- 93
           A A   F +M     C P  V YNI +                                 
Sbjct: 358 AYAYKLFNRMNTCG-CPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLN 416

Query: 94  --------RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
                   R        ++   + KE+      PD  TY  V+    +   + +   +  
Sbjct: 417 KINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQ 476

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
            MK     PD+ T+ +LIDS+ K    ++ +  F  +  +   P + T+ +++  Y K++
Sbjct: 477 EMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSK 536

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
              +A  +F +M      P+ ITY  +I                D L K G+  K   + 
Sbjct: 537 QLYQANDIFHRMVGDACYPNAITYSALI----------------DGLCKAGEIQKACEVY 580

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
           A L     N    E+D  FE      ++P+  TY  L     KA        LL  M   
Sbjct: 581 AKLIGTSDN---IESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAA 637

Query: 326 GIVPNKRFFLEALETF 341
           G  PN+  +   ++ F
Sbjct: 638 GCEPNQIVYDALVDGF 653



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 136/357 (38%), Gaps = 47/357 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSG---------------C-------------RPD 45
           Y+ L+ V+   GQ  +A  +  EM  SG               C             R D
Sbjct: 207 YNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVGSFAQALCKEGRWGDALDLLERED 266

Query: 46  PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK---PNIVTYNILLRACAQARNV 102
             +   L T  +    +A    +A+ +  +M    RC    PN+VTY  LL    + + +
Sbjct: 267 FKLDTVLCTQMISGLMEASLFNEAMSFLHRM----RCNSYIPNVVTYRTLLTGFLKKKQL 322

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
                +   +      P    +N ++  Y           + +RM +  C P  + +N+ 
Sbjct: 323 GWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIF 382

Query: 163 IDSYGKRQAF------DKMEQVFKSLMHSK---EKPTLPTFNSMIINYGKARLQGKAEYV 213
           I S   R+        D  E+V++ ++ +     K     F   +   GK     KA  +
Sbjct: 383 IGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFE---KAFQI 439

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
            ++M    + P   TY  +IT       V +A  +F E+ K+G +  V T   +++++C 
Sbjct: 440 VKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCK 499

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            GL  +A   F+   + G +P+  TY  L  AY K+        +  RM  +   PN
Sbjct: 500 AGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPN 556



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 84/381 (22%), Positives = 142/381 (37%), Gaps = 48/381 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD-------- 61
           D   Y+ LI    K G    A   F EMR++GC P+   Y AL+ A+L ++         
Sbjct: 486 DVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIF 545

Query: 62  -----------------------KAKALAKALGYFQKMKGM---------------ERCK 83
                                  KA  + KA   + K+ G                +   
Sbjct: 546 HRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTIS 605

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           PN+VTY  L+    +A+ V   + L   +  +   P+   Y+ ++D + K G I   + V
Sbjct: 606 PNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEV 665

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
             RM      P + T+  LID   K    D   +V   ++     P + T+ +M+    K
Sbjct: 666 FLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCK 725

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
                KA  +   M     +P+ +TY  +I   G    V    E+F ++   G      T
Sbjct: 726 TGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVT 785

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
              ++   C  GL  +A LL +             Y+   + ++K  +  L   LL+ ME
Sbjct: 786 YRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLASL--GLLEEME 843

Query: 324 QNGIVPNKRFFLEALETFSSS 344
            +   P    +   +++FS +
Sbjct: 844 SHDTAPIAPVYGMLIDSFSKA 864



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 126/321 (39%), Gaps = 39/321 (12%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y+     Y+ LI  M K G+  LAM + S+M    C P+   Y A++     T +  KAL
Sbjct: 674 YLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKAL 733

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
              L   +K KG   C PN+VTY  L+    +A  VD    LF ++     AP+  TY  
Sbjct: 734 -NLLSLMEK-KG---CSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRI 788

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++     G++ +   +L  MK       +  +   +  + KR  F     + + +    
Sbjct: 789 LINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKR--FLASLGLLEEMESHD 846

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P  P +  +I ++ KA   G+ E   +    M                          
Sbjct: 847 TAPIAPVYGMLIDSFSKA---GRLETALELHKEMM------------------------- 878

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+   L+   KDM  S    +++A C++    EA  L+      G+ PD S +  L K  
Sbjct: 879 EVSSSLNMASKDMHTS----LIQALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGL 934

Query: 307 TKANMKELVQKLLKRMEQNGI 327
            + N      +L   + Q G+
Sbjct: 935 IERNKWNEALQLCYGICQEGV 955



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/402 (20%), Positives = 137/402 (34%), Gaps = 78/402 (19%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           ++Q  Y      Y  L  V+G +   R A  L  E+       D  V   L+   +    
Sbjct: 125 ERQVGYKHTGACYDALAEVLGFEDPARTAERLLREIGED----DRDVLGRLLNVLVRRCC 180

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
                 +AL    ++K     +P+ VTYN L++  A A  V+    + KE+  S    D 
Sbjct: 181 LQGLWGEALEELGRLKDFGY-RPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGFCMDR 239

Query: 122 YTYNGVMDAYGKNG--------------------------------MIKEMESVLSRMKS 149
            T      A  K G                                +  E  S L RM+ 
Sbjct: 240 STVGSFAQALCKEGRWGDALDLLEREDFKLDTVLCTQMISGLMEASLFNEAMSFLHRMRC 299

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
           N   P+++T+  L+  + K++     +++   +M     P+   FNS++  Y  A     
Sbjct: 300 NSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAY 359

Query: 210 AEYVFQKMTAMKYTPSFITY--------------------------------ECIITM-- 235
           A  +F +M      P ++ Y                                 C++    
Sbjct: 360 AYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKIN 419

Query: 236 ---YGYC----DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
              +  C        +A +I  E+ + G     ST   ++   C      +A LLF+   
Sbjct: 420 TANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMK 479

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +GV PD  TY +L  ++ KA + E  Q     M   G  PN
Sbjct: 480 KVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPN 521


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 144/324 (44%), Gaps = 14/324 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ L+  + +  Q   A  L   M+  GC PD ++YNALI+ +     KAK   +A
Sbjct: 41  DAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGY----SKAKDFGQA 96

Query: 70  LGYFQKMKGMERCKPNIVTY-NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
             +  +M     C P +VTY NI+   C   R  D V  L  E+ +   +P+IYTYN ++
Sbjct: 97  FKFLAEMVK-NHCLPTVVTYTNIVDGLCKAERTRDAVK-LLDEMRDKGCSPNIYTYNVIV 154

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           +   +   + E + +L  M      PD++T+N  I    K    D++++  K L      
Sbjct: 155 EGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCK---CDRVDEARKFLARMPVT 211

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAR 246
           P + ++ ++I    K+     A  +   M+    TP  +TY  +I   G+C    V RA 
Sbjct: 212 PDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLID--GFCKGGEVERAM 269

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            + D + KLG    +   N++L A    G   +A+ +       G TPD  +Y       
Sbjct: 270 GLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGL 329

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            KA   +  + +  RM + G  PN
Sbjct: 330 CKAERVKKAKAVFDRMVERGCTPN 353



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 140/318 (44%), Gaps = 29/318 (9%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R    D   YS LI    K G+   AM L   M   GCRP+   YN+L+ A LH     
Sbjct: 242 NRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGA-LHR---- 296

Query: 64  KALAKALGYFQKMKGM----ER--CKPNIVTYNILLRACAQARNVDQVNALFKELHE--- 114
                 LG+  K + M    ER    P++V+YN  +    +A  V +  A+F  + E   
Sbjct: 297 ------LGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGC 350

Query: 115 -------SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNLLIDSY 166
                  S+L  DI  Y  ++D   K G   E  ++ S++   + C+PD+  +N+++DS+
Sbjct: 351 TPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSH 410

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
            KR+  DK  Q+ K ++  K    + T+N ++           AE +   M    + P F
Sbjct: 411 CKRRQIDKALQIHKQMLE-KNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDF 469

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           +TY  ++     C   + A E+F+E  K G    V T +A++       +  EA LLF  
Sbjct: 470 VTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTK 529

Query: 287 SHNMGVTPDSSTYKLLYK 304
                  PD  T  LL++
Sbjct: 530 LVERRWVPDDKTLGLLHR 547



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 146/336 (43%), Gaps = 21/336 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I  + K G    A  +   M N GC PD   Y++LI        K   + +A
Sbjct: 213 DVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFC----KGGEVERA 268

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +G    M  +  C+PN+V YN LL A  +  ++ +   +  E+      PD+ +YN  +D
Sbjct: 269 MGLLDSMLKLG-CRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACID 327

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKP----------DIITFNLLIDSYGKRQAFDKMEQVF 179
              K   +K+ ++V  RM    C P          DI+ + +L+D   K   FD+   +F
Sbjct: 328 GLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALF 387

Query: 180 KSLMHSK-EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
             ++  K  +P +  +N M+ ++ K R   KA  + ++M   K   + +T+   I ++G 
Sbjct: 388 SKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLE-KNCCNVVTWN--ILVHGL 444

Query: 239 C--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
           C  D +S A  +   +   G      T   +++A C  G    A  LFE +   G  PD 
Sbjct: 445 CVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDV 504

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
            TY  L       NM E    L  ++ +   VP+ +
Sbjct: 505 VTYSALITGLVHENMAEEAYLLFTKLVERRWVPDDK 540



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 140/317 (44%), Gaps = 8/317 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+KL+  + ++ +   A  +F EM +  C+PD   +  L+     +    KA  K LG  
Sbjct: 10  YNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA-RKLLGRM 68

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M     C P+   YN L+   ++A++  Q      E+ ++   P + TY  ++D   K
Sbjct: 69  KEMG----CVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCK 124

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
               ++   +L  M+   C P+I T+N++++   + +  D+ +++ + +      P + T
Sbjct: 125 AERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVT 184

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS I    K     +A     +M     TP  ++Y  +I       ++  A  + D +S
Sbjct: 185 YNSFIKGLCKCDRVDEARKFLARMPV---TPDVVSYTTVINGLCKSGDLDSASRMLDHMS 241

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V T +++++ +C  G    A  L ++   +G  P+   Y  L  A  +     
Sbjct: 242 NRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIG 301

Query: 314 LVQKLLKRMEQNGIVPN 330
             + +L  ME+ G  P+
Sbjct: 302 KAEDMLVEMERRGFTPD 318



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 146/346 (42%), Gaps = 26/346 (7%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL---HT 59
           K+   + D  IY+ LI+   K      A    +EM  + C P    Y  ++        T
Sbjct: 69  KEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERT 128

Query: 60  RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
           RD  K L +      + KG   C PNI TYN+++    + R +D+   + +E+      P
Sbjct: 129 RDAVKLLDE-----MRDKG---CSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFP 180

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D+ TYN  +    K   + E    L+RM      PD++++  +I+   K    D   ++ 
Sbjct: 181 DVVTYNSFIKGLCKCDRVDEARKFLARMPVT---PDVVSYTTVINGLCKSGDLDSASRML 237

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             + +    P + T++S+I  + K     +A  +   M  +   P+ + Y  ++      
Sbjct: 238 DHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRL 297

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            ++ +A ++  E+ + G    V + NA ++  C      +A  +F+     G TP++S+Y
Sbjct: 298 GHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSY 357

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 345
            +L           +V  LL  +  +G+    RF  EA   FS  L
Sbjct: 358 SML-----------IVDILLYTVLLDGLCKGGRFD-EACALFSKVL 391



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/390 (21%), Positives = 158/390 (40%), Gaps = 74/390 (18%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKAL- 70
           Y+ ++  + K  +TR A+ L  EMR+ GC P+   YN ++      R  D+AK + + + 
Sbjct: 115 YTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMA 174

Query: 71  --GYFQK-------MKGMERCK---------------PNIVTYNILLRACAQARNVDQVN 106
             GYF         +KG+ +C                P++V+Y  ++    ++ ++D  +
Sbjct: 175 VRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSAS 234

Query: 107 ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
            +   +      PD+ TY+ ++D + K G ++    +L  M    C+P+++ +N L+ + 
Sbjct: 235 RMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGAL 294

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
            +     K E +   +      P + ++N+ I    KA    KA+ VF +M     TP+ 
Sbjct: 295 HRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNA 354

Query: 227 ITYECIIT--------MYGYC--------------------------------DNVSRAR 246
            +Y  +I         + G C                                D+  + R
Sbjct: 355 SSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRR 414

Query: 247 EIFDELSKLGKDM------KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           +I D+  ++ K M       V T N ++   C++   ++A+ +     + G  PD  TY 
Sbjct: 415 QI-DKALQIHKQMLEKNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYG 473

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            L  A  K        +L +   + G VP+
Sbjct: 474 TLVDAMCKCGKSAAALELFEEAVKGGCVPD 503



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 83/203 (40%)

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           +++TYN ++    +     +  +V   M    C+PD  TF +L+    +    +K  ++ 
Sbjct: 6   NVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLL 65

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             +      P    +N++I  Y KA+  G+A     +M      P+ +TY  I+      
Sbjct: 66  GRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKA 125

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           +    A ++ DE+   G    + T N ++E  C      EA  + E     G  PD  TY
Sbjct: 126 ERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTY 185

Query: 300 KLLYKAYTKANMKELVQKLLKRM 322
               K   K +  +  +K L RM
Sbjct: 186 NSFIKGLCKCDRVDEARKFLARM 208



 Score = 38.5 bits (88), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 43/90 (47%)

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
           +G +  V T N +L          +A  +F+   +    PD+ T+ +L +   ++N  E 
Sbjct: 1   MGYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEK 60

Query: 315 VQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            +KLL RM++ G VP+   +   +  +S +
Sbjct: 61  ARKLLGRMKEMGCVPDDAIYNALISGYSKA 90


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 159/349 (45%), Gaps = 13/349 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R+   D   Y+ LI++  KKG    A+ +   M   G  PD   YN+LI        +
Sbjct: 224 ESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFC----R 279

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              + +AL  F+++ G     PN VTY  L+    +  ++++   L + +    L P + 
Sbjct: 280 EGRMREALRLFREING---ATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVV 336

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++    + G IK+   +L+ M   + +PD +T N LI++Y K        +V K +
Sbjct: 337 TYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKM 396

Query: 183 MHSKEKPTLPTFNSMIINYGKAR-LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           + +  KP   TF ++I  + K   +    E++F+ + A  ++PS+ TY  ++  Y   DN
Sbjct: 397 LEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDA-GFSPSYSTYSWLVDSYYDQDN 455

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
                 + DELS+ G  + +S   A++   C       A+ +F      G+  DS  Y  
Sbjct: 456 KEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTS 515

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
           L  AY KA        +L  M++  ++   + +      FS+S AG  S
Sbjct: 516 LAYAYFKAGKAIAASDMLDEMDKRRLMITLKIY----RCFSASYAGDGS 560



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 144/322 (44%), Gaps = 7/322 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           +++ I S L+        T+ A+ +F  MR  G +P       L    L++  KA+    
Sbjct: 125 SNSQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVL----LNSLAKARLTNM 180

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
               ++KM  +    PNI  +N+L+ AC ++ +V++   L  E+    + PD++TYN ++
Sbjct: 181 VWKVYKKMVRVG-VVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLI 239

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
             Y K GM  E   +  RM+     PDI+T+N LI  + +     +  ++F+ +  +   
Sbjct: 240 SLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI--NGAT 297

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   T+ ++I  Y +     +A  + + M      P  +TY  I+        +  A  +
Sbjct: 298 PNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRL 357

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            +E+S+   +    T N ++ AYC  G    A  + +     G+ PD  T+K L   + K
Sbjct: 358 LNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCK 417

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
            +  +  ++ L  M   G  P+
Sbjct: 418 LHEVDSAKEFLFEMLDAGFSPS 439


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 147/332 (44%), Gaps = 22/332 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ LI    K G    A   F EM   GC P+   Y ALI A+L +R  +KA    
Sbjct: 256 DVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKA---- 311

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFK------------ELHESIL 117
                +M   + C PNIVTY  L+    +A  +++ + ++K            ++H  ++
Sbjct: 312 -NEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVV 370

Query: 118 -----APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 172
                 P+++TY  ++D   K   +KE   +L  M    C+P+ + ++ LID   K    
Sbjct: 371 DGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKL 430

Query: 173 DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 232
           D+ ++VF +++     P + T++S+I    K +    A  V  KM      P+ + Y  +
Sbjct: 431 DEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEM 490

Query: 233 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV 292
           I           A ++   + + G +  V T  AM++ +  +G   +   L +   + G 
Sbjct: 491 IDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGC 550

Query: 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
            P+  TY++L        + +   KLL+ M+Q
Sbjct: 551 APNFVTYRVLINHCCSTGLLDEAHKLLEEMKQ 582



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 146/343 (42%), Gaps = 22/343 (6%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           + +I DT  YSK+I  +    +   A  LF EM+ +G  PD  VY  LI +      KA 
Sbjct: 216 KGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFC----KAG 271

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            + +A  +F +M+  + C PN+VTY  L+ A  ++R V + N +++ +      P+I TY
Sbjct: 272 FIEQARNWFDEME-RDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTY 330

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQC-----------------KPDIITFNLLIDSYG 167
             ++D   K G I++   +   MK                     +P++ T+  L+D   
Sbjct: 331 TALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLC 390

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
           K     +   + KS+     +P    ++++I    KA    +A+ VF  M    Y P+  
Sbjct: 391 KAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVY 450

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           TY  +I        +  A ++  ++ +      V     M++  C  G   EA  L    
Sbjct: 451 TYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMM 510

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              G  P+  TY  +   + K+   E   +LL++M   G  PN
Sbjct: 511 EEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPN 553



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 156/381 (40%), Gaps = 56/381 (14%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK---- 68
           I++ L+    + G    A  L  +M   GC+P   VYN LI     + +  K +      
Sbjct: 114 IFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEK 173

Query: 69  -------------------------ALGYFQKMKGMER------CKPNIVTYNILLRACA 97
                                     +G F+K   + R        P+  TY+ ++    
Sbjct: 174 AYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLC 233

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
            A  V++   LF+E+  + +APD+Y Y  ++D++ K G I++  +    M+ + C P+++
Sbjct: 234 NASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVV 293

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           T+  LI +Y K +   K  +V++ ++     P + T+ ++I    KA    KA  +++ M
Sbjct: 294 TYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIM 353

Query: 218 ---------TAMKY--------TPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKD 258
                      M +         P+  TY  ++   G C    V  AR++   +S  G +
Sbjct: 354 KKENVEIPDVDMHFRVVDGASNEPNVFTYGALVD--GLCKAYQVKEARDLLKSMSVEGCE 411

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
                 +A+++  C  G   EA  +F      G  P+  TY  L     K    +L  K+
Sbjct: 412 PNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKV 471

Query: 319 LKRMEQNGIVPNKRFFLEALE 339
           L +M +N   PN   + E ++
Sbjct: 472 LSKMLENSCAPNVVIYTEMID 492



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 135/285 (47%), Gaps = 25/285 (8%)

Query: 43  RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
            P+   Y AL+        KA  + +A    + M  +E C+PN V Y+ L+  C +A  +
Sbjct: 376 EPNVFTYGALVDGLC----KAYQVKEARDLLKSMS-VEGCEPNHVVYDALIDGCCKAGKL 430

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           D+   +F  + E    P++YTY+ ++D   K+  +     VLS+M  N C P+++ +  +
Sbjct: 431 DEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEM 490

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEK---PTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
           ID   K     K ++ +K ++  +EK   P + T+ +MI  +GK+    K   + Q+M++
Sbjct: 491 IDGLCK---VGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSS 547

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY--CMNGLP 277
               P+F+TY  +I       N   +  + DE  KL ++MK +     +  Y   + G  
Sbjct: 548 KGCAPNFVTYRVLI-------NHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGFN 600

Query: 278 TE----ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
            E      L FE S N  V P +  Y++L   + KA   E+  +L
Sbjct: 601 REFIASLYLSFEISENDSV-PVAPVYRVLIDNFIKAGRLEIALEL 644



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 130/318 (40%), Gaps = 19/318 (5%)

Query: 21  MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME 80
           + K G+ R A+ L  +       PD  +Y  +I+       +A    +A+ +  +M+   
Sbjct: 20  LCKSGKWREALSLLEKEEFV---PDTVLYTKMISGLC----EASLFEEAMDFLTRMRA-S 71

Query: 81  RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140
            C PN++TY ILL  C     + +   +   +      P    +N ++ AY ++G     
Sbjct: 72  SCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYA 131

Query: 141 ESVLSRMKSNQCKPDIITFNLLIDSYGK-----RQAFDKMEQVFKSLMHSK---EKPTLP 192
             +L +M    C+P  + +N+LI          +   D  E+ +  ++ +     K  + 
Sbjct: 132 YKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNIS 191

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            F+  +   GK     KA  V ++M +  + P   TY  +I        V +A ++F E+
Sbjct: 192 NFSRCLCGIGKFE---KAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEM 248

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            + G    V     +++++C  G   +A   F+     G  P+  TY  L  AY K+   
Sbjct: 249 KRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKV 308

Query: 313 ELVQKLLKRMEQNGIVPN 330
               ++ + M   G  PN
Sbjct: 309 SKANEVYEMMLSKGCTPN 326



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/401 (21%), Positives = 146/401 (36%), Gaps = 102/401 (25%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-------------------------- 40
           ++ DT +Y+K+I+ + +      AM   + MR S                          
Sbjct: 38  FVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCK 97

Query: 41  ---------GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER--CKPNIVTY 89
                    GC P P ++N+L+ A+  + D A A       ++ +K M +  C+P  V Y
Sbjct: 98  RILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYA-------YKLLKKMVQCGCQPGYVVY 150

Query: 90  NILLRACAQARN----------------------VDQVNA------------------LF 109
           NIL+     +                        +++VN                   + 
Sbjct: 151 NILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVI 210

Query: 110 KELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR 169
           +E+      PD  TY+ V+        +++   +   MK N   PD+  +  LIDS+ K 
Sbjct: 211 REMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKA 270

Query: 170 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
              ++    F  +      P + T+ ++I  Y K+R   KA  V++ M +   TP+ +TY
Sbjct: 271 GFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTY 330

Query: 230 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289
             +I                D L K GK  K S +  +++    N    + D+ F     
Sbjct: 331 TALI----------------DGLCKAGKIEKASQIYKIMKK--ENVEIPDVDMHFRVVDG 372

Query: 290 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
               P+  TY  L     KA   +  + LLK M   G  PN
Sbjct: 373 ASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPN 413



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/245 (20%), Positives = 110/245 (44%), Gaps = 19/245 (7%)

Query: 112 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171
           L +    PD   Y  ++    +  + +E    L+RM+++ C P+++T+ +L+     ++ 
Sbjct: 33  LEKEEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEK 92

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
             + +++   ++     P+   FNS++  Y ++     A  + +KM      P ++ Y  
Sbjct: 93  LGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNI 152

Query: 232 IITMYGYCDNVSRAREIFDELSK-----LGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           +I   G C +    +++ D   K     L   + ++ +N    + C+ G+       FE 
Sbjct: 153 LIG--GICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGK-----FEK 205

Query: 287 SHNM-------GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
           ++N+       G  PD+STY  +      A+  E   +L + M++NGI P+   +   ++
Sbjct: 206 AYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLID 265

Query: 340 TFSSS 344
           +F  +
Sbjct: 266 SFCKA 270


>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
          Length = 414

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 141/319 (44%), Gaps = 5/319 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R Y  D   ++ +I  + + GQ + A+ L   M   GC PD   +N L+     T + 
Sbjct: 74  QDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNE- 132

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              +++     ++++    C PN+VT+  ++    +A  ++   A++ ++  S + P+  
Sbjct: 133 ---VSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTV 189

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN +++ YGK G +     V  +M   +C PD++TF+ LID Y +    D   +++  +
Sbjct: 190 TYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDM 249

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM-KYTPSFITYECIITMYGYCDN 241
              + +P + TF+ +I +  K     +A  +  ++       P    Y  +I +   C  
Sbjct: 250 AQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGK 309

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           V  A  I   + + G      T   ++  YCM    +EA + F      G +PDS T   
Sbjct: 310 VDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNC 369

Query: 302 LYKAYTKANMKELVQKLLK 320
                 KA M   V  +++
Sbjct: 370 FISCLLKAGMPNEVDHVMR 388



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 136/301 (45%), Gaps = 6/301 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           L S+    GCR +   YN L+++ L  R +       +  F++        P++ ++N++
Sbjct: 33  LLSKASEFGCRVEAYAYNKLMSS-LIGRGRVH---DVVALFERWIQDRVYSPDVWSFNVV 88

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ- 151
           ++   +   V +   L + ++E   +PD  T+N ++D   +   +     VL R++ +  
Sbjct: 89  IKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGV 148

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
           C P+++TF  +I  Y K    +    V+  ++ S   P   T+N +I  YGK    G A 
Sbjct: 149 CMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAV 208

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
            V+Q+MT ++  P  +T+  +I  Y  C  +  A  I+ ++++      V T + ++ + 
Sbjct: 209 EVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSL 268

Query: 272 CMNGLPTEA-DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           C      EA  LL E +    + P +  Y  +     K    +    + K ME+ G  P+
Sbjct: 269 CKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPD 328

Query: 331 K 331
           K
Sbjct: 329 K 329



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/254 (19%), Positives = 99/254 (38%), Gaps = 35/254 (13%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKE-LHESILAPDIYTYNGVMDAYGKNGMIKEM 140
           C+     YN L+ +      V  V ALF+  + + + +PD++++N V+    + G +++ 
Sbjct: 42  CRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKA 101

Query: 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
             ++ RM    C PD +T N+L+D   +     +  +V +                    
Sbjct: 102 LELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLR-------------------- 141

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
               RLQ     +          P+ +T+  +I+ Y     +  A  +++++   G    
Sbjct: 142 ----RLQRDGVCM----------PNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPN 187

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
             T N ++  Y   G    A  +++    +   PD  T+  L   Y +    +   ++  
Sbjct: 188 TVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWS 247

Query: 321 RMEQNGIVPNKRFF 334
            M Q+ I PN   F
Sbjct: 248 DMAQHRIQPNVYTF 261


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 147/324 (45%), Gaps = 5/324 (1%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  +T  ++ LI  +  KGQ   A+     +   G + D   Y  LI    H   K    
Sbjct: 123 YHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLI----HGLCKVGET 178

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             AL   +++ G    +PN+V Y+ ++    + ++V+    L+ E+    ++P++ TY+ 
Sbjct: 179 RAALDLLRRVDG-NLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSA 237

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  +   G +K+   + ++M     KPD+ TFN+L+D + K     + + VF  +M   
Sbjct: 238 LISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQG 297

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            KP + T+ S++  Y   +   KA+ +   M+     P   +Y  +I  +     V  A 
Sbjct: 298 IKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAM 357

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +F E+        V T N++++  C  G  + A  L +  H+ GV PD  TY  +  A 
Sbjct: 358 NLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDAL 417

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K +  +    LL +++  GI PN
Sbjct: 418 CKNHQVDKAIALLTKLKDQGIRPN 441



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 146/321 (45%), Gaps = 11/321 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +YS +I  M K      A  L+SEM + G  P+   Y+ALI+           L  A+  
Sbjct: 199 MYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFF----TVGQLKDAIDL 254

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F KM  +E  KP++ T+NIL+    +   + +   +F  + +  + P++ TY  +MD Y 
Sbjct: 255 FNKMI-LENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYC 313

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
               + + +S+L  M      PDI ++N+LID + K +  D+   +FK + H    P + 
Sbjct: 314 LVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVV 373

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVSRAREIF 249
           T+NS+I   G  +L GK  Y  + +  M      P  ITY  I+        V +A  + 
Sbjct: 374 TYNSLI--DGLCKL-GKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALL 430

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            +L   G    + T   +++  C  G   +A  +FE+    G     +TY ++   +   
Sbjct: 431 TKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNK 490

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
            + +    LL +M+ N  +P+
Sbjct: 491 GLFDEALALLSKMKDNSCIPD 511



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 147/315 (46%), Gaps = 9/315 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G+TR A+ L   +  +  +P+  +Y+ +I        K K +  A   +
Sbjct: 165 YGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMC----KDKHVNDAFDLY 220

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  KG+    PN+VTY+ L+        +     LF ++    + PD+YT+N ++D +
Sbjct: 221 SEMVSKGIS---PNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGF 277

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K+G +KE ++V + M     KP+++T+  L+D Y   +  +K + +  ++      P +
Sbjct: 278 CKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDI 337

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            ++N +I  + K +   +A  +F++M      P  +TY  +I        +S A ++ DE
Sbjct: 338 QSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDE 397

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G    + T +++L+A C N    +A  L     + G+ P+  TY +L     K   
Sbjct: 398 MHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGR 457

Query: 312 KELVQKLLKRMEQNG 326
            E    + + +   G
Sbjct: 458 LEDAHNIFEDLLVKG 472



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 5/197 (2%)

Query: 37  MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 96
           M   G  PD   YN LI        K K + +A+  F++M   +   P++VTYN L+   
Sbjct: 328 MSQRGVNPDIQSYNILIDGFC----KIKKVDEAMNLFKEMHH-KHIIPDVVTYNSLIDGL 382

Query: 97  AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
            +   +     L  E+H+  + PDI TY+ ++DA  KN  + +  ++L+++K    +P++
Sbjct: 383 CKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNM 442

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
            T+ +LID   K    +    +F+ L+      T+ T+  MI  +    L  +A  +  K
Sbjct: 443 YTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSK 502

Query: 217 MTAMKYTPSFITYECII 233
           M      P  +TYE II
Sbjct: 503 MKDNSCIPDAVTYEIII 519



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 40/210 (19%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR    D   Y+ LI    K  +   AM LF EM +    PD   YN+LI        K 
Sbjct: 330 QRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLC----KL 385

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             ++ AL    +M       P+I+TY+ +L A  +   VD+  AL  +L +  + P++YT
Sbjct: 386 GKISYALKLVDEMHD-RGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYT 444

Query: 124 YNGVMDAYGKNGMIKEMESV-----------------------------------LSRMK 148
           Y  ++D   K G +++  ++                                   LS+MK
Sbjct: 445 YTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMK 504

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
            N C PD +T+ ++I S   +   DK E++
Sbjct: 505 DNSCIPDAVTYEIIIRSLFDKDENDKAEKL 534


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 144/320 (45%), Gaps = 8/320 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL-HTRDKAKALAKALGY 72
           Y+ L+    +  +  LA+  F ++  +G R D     A+I +HL     +AK   +AL  
Sbjct: 116 YAILMDCCTRAHRPELALAFFGQLLRTGLRVD-----AIIASHLLKGFCEAKRTDEALDI 170

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE--SILAPDIYTYNGVMDA 130
                    C P++ +YNILL++        Q + L + + E  ++ +PD+  YN V+D 
Sbjct: 171 LLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDG 230

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K G + +   +   M      PD++T++ ++ +  K +A DK E   + +++    P 
Sbjct: 231 FFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPD 290

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             T+N++I  Y       +A  VF++M      P  +    ++        +  AR++FD
Sbjct: 291 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFD 350

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            ++  G++  V +   ML  Y   G   +   LF+     G+ P   T+ +L KAY    
Sbjct: 351 TMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCG 410

Query: 311 MKELVQKLLKRMEQNGIVPN 330
           M +    +   M  +G+ P+
Sbjct: 411 MLDKAMIIFNEMRDHGVKPH 430



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 148/358 (41%), Gaps = 44/358 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I    K+G    A  LF EM   G  PD   Y++++    H   KA+A+ KA
Sbjct: 220 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVV----HALCKARAMDKA 275

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
             + ++M  KG+    P+  TYN L+   +      +   +FKE+    + PD+   N +
Sbjct: 276 EAFLRQMVNKGV---LPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTL 332

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           M +  K G IKE   V   M      PD+ ++ ++++ Y  +     M  +F  ++    
Sbjct: 333 MGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGI 392

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT------------- 234
            P + TFN +I  Y    +  KA  +F +M      P  +TY  +I              
Sbjct: 393 APVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAME 452

Query: 235 --------------------MYGYCDNVS--RAREIFDELSKLGKDMKVSTLNAMLEAYC 272
                               + G+C + S  +A+E+  E+   G  + +    +++   C
Sbjct: 453 KFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLC 512

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             G   +A  +F+ + N+G+ PD+  Y +L   Y      E   ++   M   GI PN
Sbjct: 513 KLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 570



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 143/309 (46%), Gaps = 15/309 (4%)

Query: 41  GCRPDPSVYNALITAHLHTRDKAKA--LAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
           GC PD   YN L+ +  +     +A  L + +      +G   C P++V YN ++    +
Sbjct: 179 GCVPDVFSYNILLKSLCNQGKSGQADDLLRMMA-----EGGTVCSPDVVAYNTVIDGFFK 233

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
             +V++   LFKE+ +  + PD+ TY+ V+ A  K   + + E+ L +M +    PD  T
Sbjct: 234 EGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWT 293

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM---IINYGKARLQGKAEYVFQ 215
           +N LI  Y     + +  +VFK +      P +   N++   +  YGK +   +A  VF 
Sbjct: 294 YNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIK---EARDVFD 350

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            M      P   +Y  ++  Y     +    ++FD +   G    + T N +++AY   G
Sbjct: 351 TMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCG 410

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKLLKRMEQNGIVPNKRFF 334
           +  +A ++F    + GV P   TY  +  A  +   M + ++K  + ++Q G+VP+K  +
Sbjct: 411 MLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQ-GVVPDKYAY 469

Query: 335 LEALETFSS 343
              ++ F +
Sbjct: 470 HCLIQGFCT 478



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 136/324 (41%), Gaps = 11/324 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  +IA + + G+   AM  F++M + G  PD   Y+ LI          KA  K L   
Sbjct: 434 YMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKA--KELISE 491

Query: 74  QKMKGMERCKPNIVTY-NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
               GM   + +IV + +I+   C   R +D  N +F       L PD   YN +MD Y 
Sbjct: 492 IMNNGM---RLDIVFFGSIINNLCKLGRVMDAQN-IFDLTVNVGLHPDAVVYNMLMDGYC 547

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
             G +++   V   M S   +P+++ +  L++ Y K    D+   +F+ ++    KP+  
Sbjct: 548 LVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTI 607

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFD 250
            +N +I    +A     A+  F +MT      +  TY   I + G   N     A  +F 
Sbjct: 608 LYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYS--IVLRGLFKNRCFDEAIFLFK 665

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           EL  +   + + TLN M+          EA  LF +    G+ P + TY ++     K  
Sbjct: 666 ELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEG 725

Query: 311 MKELVQKLLKRMEQNGIVPNKRFF 334
           + E  + +   M+  G  P+ R  
Sbjct: 726 LVEEAEDMFSSMQNAGCEPDSRLL 749



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/329 (20%), Positives = 133/329 (40%), Gaps = 5/329 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +++  + D    + L+  + K G+ + A  +F  M   G  PD   Y  ++  +      
Sbjct: 318 RRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYA----T 373

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L      F  M G +   P I T+N+L++A A    +D+   +F E+ +  + P + 
Sbjct: 374 KGCLVDMTDLFDLMLG-DGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVV 432

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  V+ A  + G + +     ++M      PD   ++ LI  +    +  K +++   +
Sbjct: 433 TYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEI 492

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           M++  +  +  F S+I N  K      A+ +F     +   P  + Y  ++  Y     +
Sbjct: 493 MNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKM 552

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +FD +   G +  V     ++  YC  G   E   LF      G+ P +  Y ++
Sbjct: 553 EKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNII 612

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNK 331
                +A      +     M ++GI  NK
Sbjct: 613 IDGLFEAGRTVPAKVKFHEMTESGIAMNK 641



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 132/316 (41%), Gaps = 5/316 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI      G    AM +F+EMR+ G +P    Y  +I A         A+ K    F
Sbjct: 399 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEK----F 454

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   +   P+   Y+ L++      ++ +   L  E+  + +  DI  +  +++   K
Sbjct: 455 NQMID-QGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCK 513

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + + +++     +    PD + +N+L+D Y      +K  +VF +++ +  +P +  
Sbjct: 514 LGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVG 573

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + +++  Y K     +   +F++M      PS I Y  II           A+  F E++
Sbjct: 574 YGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMT 633

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G  M   T + +L     N    EA  LF+    M V  D  T   +     +    E
Sbjct: 634 ESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVE 693

Query: 314 LVQKLLKRMEQNGIVP 329
             + L   + ++G+VP
Sbjct: 694 EAKDLFASISRSGLVP 709



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 115/266 (43%), Gaps = 19/266 (7%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   +  +I  + K G+   A  +F    N G  PD  VYN L+  +         + KA
Sbjct: 500 DIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLV----GKMEKA 555

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           L  F  M   G+E   PN+V Y  L+    +   +D+  +LF+E+ +  + P    YN +
Sbjct: 556 LRVFDAMVSAGIE---PNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNII 612

Query: 128 MDAYGKNGM-----IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +D   + G      +K  E   S +  N+C     T+++++    K + FD+   +FK L
Sbjct: 613 IDGLFEAGRTVPAKVKFHEMTESGIAMNKC-----TYSIVLRGLFKNRCFDEAIFLFKEL 667

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                K  + T N+MI    + R   +A+ +F  ++     P  +TY  +IT       V
Sbjct: 668 RAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLV 727

Query: 243 SRAREIFDELSKLGKDMKVSTLNAML 268
             A ++F  +   G +     LN ++
Sbjct: 728 EEAEDMFSSMQNAGCEPDSRLLNHVV 753



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 10/200 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  L+    K G+    + LF EM   G +P   +YN +I           A  K     
Sbjct: 574 YGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMT 633

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +    M +C     TY+I+LR   + R  D+   LFKEL    +  DI T N ++    +
Sbjct: 634 ESGIAMNKC-----TYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQ 688

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              ++E + + + +  +   P  +T++++I +  K    ++ E +F S+ ++  +P    
Sbjct: 689 TRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEP---- 744

Query: 194 FNSMIINYGKARLQGKAEYV 213
            +S ++N+    L  K E V
Sbjct: 745 -DSRLLNHVVRELLKKNEIV 763


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 163/357 (45%), Gaps = 50/357 (14%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  ++  + K+G   LA  L ++M  +    D  ++N +I +      K + +  AL  F
Sbjct: 153 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLC----KYRHVDDALNLF 208

Query: 74  QKM--KGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           ++M  KG+   +PN+VTY+ L+   C+  R  D  + L  ++ E  + P++ T+N ++DA
Sbjct: 209 KEMETKGI---RPNVVTYSSLISCLCSYGRWSD-ASQLLSDMIEKKINPNLVTFNALIDA 264

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K G   E E +   M      PDI T+N LI+ +      DK +Q+F+ ++     P 
Sbjct: 265 FVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPD 324

Query: 191 LPTFNSMIINYGKAR---------------------------LQG--------KAEYVFQ 215
           L T+N++I  + K++                           +QG         A+ VF+
Sbjct: 325 LDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 384

Query: 216 KMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           +M +    P  +TY   I + G C+N  + +A E+FD + K    + +     M+E  C 
Sbjct: 385 QMVSDGVPPDIMTYS--ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 442

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            G   +   LF +    GV P+  TY  +        + +    LLK+M+++G +P+
Sbjct: 443 AGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPD 499



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 145/305 (47%), Gaps = 13/305 (4%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CKPNIVT 88
           A+ L  +M   G RPD   +  LI   L   +KA   ++A+    +M  ++R C+PN+VT
Sbjct: 99  AVALVDQMVEMGYRPDTITFTTLIHG-LFLHNKA---SEAVALVDRM--VQRGCQPNLVT 152

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y +++    +  ++D    L  ++  + +  D+  +N ++D+  K   + +  ++   M+
Sbjct: 153 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEME 212

Query: 149 SNQCKPDIITFNLLID---SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
           +   +P+++T++ LI    SYG+   +    Q+   ++  K  P L TFN++I  + K  
Sbjct: 213 TKGIRPNVVTYSSLISCLCSYGR---WSDASQLLSDMIEKKINPNLVTFNALIDAFVKEG 269

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
              +AE +   M      P   TY  +I  +   D + +A+++F+ +        + T N
Sbjct: 270 KFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYN 329

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            +++ +C +    +   LF    + G+  D+ TY  L +        +  QK+ K+M  +
Sbjct: 330 TLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD 389

Query: 326 GIVPN 330
           G+ P+
Sbjct: 390 GVPPD 394



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 153/349 (43%), Gaps = 9/349 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++KL++ + K  +  L + L  +M+  G   +   YN LI         + ALA  LG  
Sbjct: 13  FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA-LLGKM 71

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+ G E   P+IVT + LL      + +    AL  ++ E    PD  T+  ++     
Sbjct: 72  MKL-GYE---PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +    E  +++ RM    C+P+++T+ ++++   KR   D    +   +  +K +  +  
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           FN++I +  K R    A  +F++M      P+ +TY  +I+        S A ++  ++ 
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           +   +  + T NA+++A+   G   EA+ L ++     + PD  TY  L   +   +  +
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRSLS 362
             +++ + M      P+    L+   T       S+     T+L R +S
Sbjct: 308 KAKQMFEFMVSKDCFPD----LDTYNTLIKGFCKSKRVEDGTELFREMS 352



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 129/311 (41%), Gaps = 44/311 (14%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKALAKALG 71
           ++ LI    K+G+   A  L  +M      PD   YN+LI    +H R DKAK +     
Sbjct: 258 FNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM----- 312

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            F+ M   + C P++ TYN L++   +++ V+    LF+E+    L  D  TY  ++   
Sbjct: 313 -FEFMVSKD-CFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 370

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
             +G     + V  +M S+   PDI+T+++L+D        +K  +VF  +  S+ K  +
Sbjct: 371 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI 430

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             + +MI    KA   GK                                V    ++F  
Sbjct: 431 YIYTTMIEGMCKA---GK--------------------------------VDDGWDLFCS 455

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           LS  G    V T N M+   C   L  EA  L +     G  PDS TY  L +A+ +   
Sbjct: 456 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGD 515

Query: 312 KELVQKLLKRM 322
           K    +L++ M
Sbjct: 516 KAASAELIREM 526



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/260 (20%), Positives = 111/260 (42%), Gaps = 4/260 (1%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+I  +N LL A A+ +  D V +L +++    ++ ++YTYN +++ + +   I    ++
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L +M     +P I+T + L++ Y   +       +   ++    +P   TF ++I     
Sbjct: 68  LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKV 261
                +A  +  +M      P+ +TY  ++   G C   ++  A  + +++     +  V
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVN--GLCKRGDIDLAFNLLNKMEAAKIEADV 185

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
              N ++++ C      +A  LF+     G+ P+  TY  L              +LL  
Sbjct: 186 VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSD 245

Query: 322 MEQNGIVPNKRFFLEALETF 341
           M +  I PN   F   ++ F
Sbjct: 246 MIEKKINPNLVTFNALIDAF 265



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 5/163 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R  + DT  Y+ LI  +   G    A  +F +M + G  PD   Y+ L+    +     
Sbjct: 353 HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 412

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           KAL +   Y QK       K +I  Y  ++    +A  VD    LF  L    + P++ T
Sbjct: 413 KAL-EVFDYMQK----SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVT 467

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
           YN ++       +++E  ++L +MK +   PD  T+N LI ++
Sbjct: 468 YNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAH 510



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 66/149 (44%)

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++ S+  P++  FN ++    K +       + +KM  +  + +  TY  +I  +     
Sbjct: 1   MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +S A  +  ++ KLG +  + TL+++L  YC     ++A  L +    MG  PD+ T+  
Sbjct: 61  ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 120

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           L       N       L+ RM Q G  PN
Sbjct: 121 LIHGLFLHNKASEAVALVDRMVQRGCQPN 149


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 159/349 (45%), Gaps = 13/349 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R+   D   Y+ LI++  KKG    A+ +   M   G  PD   YN+LI        +
Sbjct: 224 ESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFC----R 279

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              + +AL  F+++ G     PN VTY  L+    +  ++++   L + +    L P + 
Sbjct: 280 EGRMREALRLFREING---ATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVV 336

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++    + G IK+   +L+ M   + +PD +T N LI++Y K        +V K +
Sbjct: 337 TYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKM 396

Query: 183 MHSKEKPTLPTFNSMIINYGKAR-LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           + +  KP   TF ++I  + K   +    E++F+ + A  ++PS+ TY  ++  Y   DN
Sbjct: 397 LEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDA-GFSPSYSTYSWLVDSYYDQDN 455

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
                 + DELS+ G  + +S   A++   C       A+ +F      G+  DS  Y  
Sbjct: 456 KEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTS 515

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
           L  AY KA        +L  M++  ++   + +      FS+S AG  S
Sbjct: 516 LAYAYFKAGKAIAASDMLDEMDKRRLMITLKIY----RCFSASYAGDGS 560



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 144/322 (44%), Gaps = 7/322 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           +++ I S L+        T+ A+ +F  MR  G +P       L    L++  KA+    
Sbjct: 125 SNSQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVL----LNSLAKARLTNM 180

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
               ++KM  +    PNI  +N+L+ AC ++ +V++   L  E+    + PD++TYN ++
Sbjct: 181 VWKVYKKMVRVG-VVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLI 239

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
             Y K GM  E   +  RM+     PDI+T+N LI  + +     +  ++F+ +  +   
Sbjct: 240 SLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI--NGAT 297

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   T+ ++I  Y +     +A  + + M      P  +TY  I+        +  A  +
Sbjct: 298 PNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRL 357

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            +E+S+   +    T N ++ AYC  G    A  + +     G+ PD  T+K L   + K
Sbjct: 358 LNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCK 417

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
            +  +  ++ L  M   G  P+
Sbjct: 418 LHEVDSAKEFLFEMLDAGFSPS 439


>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 401

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 147/332 (44%), Gaps = 14/332 (4%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG--CRPDPSVYNALITAHLHTRDK 62
           R  I D   Y+ L+  +  + +++ A+ L   M + G  C PD   Y+ +I       D 
Sbjct: 45  RRGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDL 104

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K L             +R  PN+VTYN ++ A  +A+ VD+   +   + +S + PD  
Sbjct: 105 DKMLD------------QRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCM 152

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++  +  +G  KE    L +M+S+  +PD++T+N L+D   K     +  ++F S+
Sbjct: 153 TYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSM 212

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                KP + T+ +++  Y       +   +   M      P+   +  ++  Y   + V
Sbjct: 213 TKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKV 272

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A  +F ++ + G +    T   +++  C +G   +A L FE   + G+ PDS  Y  L
Sbjct: 273 EEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSL 332

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
             +    +  E  ++L   M   GI  +  FF
Sbjct: 333 IHSLCIFDKWEKAEELFLEMLDRGICLSTIFF 364



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 129/285 (45%), Gaps = 5/285 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +IA + K      AM + + M  SG  PD   YN+++     +    +A+     + 
Sbjct: 119 YNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIV----FL 174

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KM+  +  +P++VTYN L+    +     +   +F  + +  L PDI TY  ++  Y  
Sbjct: 175 KKMRS-DGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYAT 233

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + EM  +L  M  N   P+   F++L+ +Y K++  ++   VF  +      P   T
Sbjct: 234 KGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVT 293

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + ++I    K+     A   F++M      P  I Y  +I      D   +A E+F E+ 
Sbjct: 294 YGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEML 353

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             G  +     N++++++C  G   E+  LF+    +GV PD  T
Sbjct: 354 DRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIIT 398


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 141/331 (42%), Gaps = 19/331 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  + ++GQ R A+ +  +M   GC PD   YN L+          +A  K  GY 
Sbjct: 10  YNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILL----------EATCKGRGYR 59

Query: 74  QKMKGM-----ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           Q M+ +     E C PN VTYN+L+       +VD    L + L      P    YN V+
Sbjct: 60  QAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVL 119

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
                     + + +++ M    C P+  TFN++I S  ++    +  Q+ + +      
Sbjct: 120 KGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCT 179

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS--RAR 246
             + T+N++I    + R    A  +  KM +    P  +TY  ++   G C       A 
Sbjct: 180 ANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLK--GLCSAARWVDAE 237

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+ D +++ G      T N ++   C  GL  +A  +F+   + G TP+S TY  +    
Sbjct: 238 ELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGL 297

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEA 337
            KA   +   +L   M   G  P+K + L A
Sbjct: 298 AKATKLDQALELFNEMGHKGFNPDKIYQLLA 328



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 125/290 (43%), Gaps = 9/290 (3%)

Query: 43  RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
           +P+   YN LI    HT  +   +  AL     M     C P++VTYNILL A  + R  
Sbjct: 4   QPNAYTYNPLI----HTLCERGQVRDALSVLDDML-CRGCAPDVVTYNILLEATCKGRGY 58

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
            Q   L   +      P+  TYN +MD     G + +   +L  + S+ CKP  + +N +
Sbjct: 59  RQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTV 118

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           +      + +   +++   ++     P   TFN +I +  +  L  +A  + +KM+    
Sbjct: 119 LKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGC 178

Query: 223 TPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
           T + +TY  II   G C+  NV  A  +  ++   G    + T N +L+  C      +A
Sbjct: 179 TANIVTYNAIIN--GLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDA 236

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + L +N    G  PD+ T+  L     +  +     ++ K+M   G  PN
Sbjct: 237 EELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPN 286



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R    D   Y+ L+    K    R AM L   MR  GC P+   YN L+       D   
Sbjct: 36  RGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDD 95

Query: 65  AL------------AKALGYFQKMKGM------------------ERCKPNIVTYNILLR 94
           AL               + Y   +KG+                  E C PN  T+N+++ 
Sbjct: 96  ALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIY 155

Query: 95  ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
           +  +   + Q   L +++ +     +I TYN +++   +   +     +LS+MKS  CKP
Sbjct: 156 SLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKP 215

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           DI+T+N L+        +   E++  ++  +   P   TFN++I    +  L   A  VF
Sbjct: 216 DIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVF 275

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           ++M     TP+ ITY  II+       + +A E+F+E+    K      +  +L A C+N
Sbjct: 276 KQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGH--KGFNPDKIYQLL-AECLN 332

Query: 275 GLPT--EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
              T  EA        + G++P +  Y  +     +    E    ++  M  +G +P+  
Sbjct: 333 DDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDL 392

Query: 333 FFLEALETFS 342
            ++  +E  +
Sbjct: 393 TYVILIEGLA 402



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 135/324 (41%), Gaps = 18/324 (5%)

Query: 24  KGQTRLAMW-----LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKG 78
           KG      W     L +EM    C P+ + +N +I    ++  +   L +A+   +KM  
Sbjct: 120 KGLCSAERWGDADELVTEMLRENCPPNEATFNVVI----YSLCRKGLLQQAIQLLEKMS- 174

Query: 79  MERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIK 138
              C  NIVTYN ++    + RNVD    L  ++      PDI TYN ++          
Sbjct: 175 KHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWV 234

Query: 139 EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 198
           + E ++  M  N C PD +TFN LI    ++       +VFK +      P   T++++I
Sbjct: 235 DAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTII 294

Query: 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 258
               KA    +A  +F +M    + P  I Y+ +       D +  A +   +L   G  
Sbjct: 295 SGLAKATKLDQALELFNEMGHKGFNPDKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGIS 353

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL-----YKAYTKANMKE 313
                 NA+L   C NG    A  +     + G  PD  TY +L     Y+ Y     +E
Sbjct: 354 PHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLN-EARE 412

Query: 314 LVQKLLKR-MEQNGIVPNKRFFLE 336
           L+ KL  R +  N ++ ++   L+
Sbjct: 413 LLIKLCSRDVLVNSLIKSEALLLD 436



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 79/162 (48%), Gaps = 6/162 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           Q   + D   ++ LI  + +KG    A+ +F +M + GC P+   Y+ +I+       KA
Sbjct: 245 QNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISG----LAKA 300

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L +AL  F +M G +   P+ + Y +L         +++     ++L +S ++P    
Sbjct: 301 TKLDQALELFNEM-GHKGFNPDKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVL 358

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
           YN ++    +NG  +    +++ M S+ C PD +T+ +LI+ 
Sbjct: 359 YNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEG 400


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 163/357 (45%), Gaps = 50/357 (14%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  ++  + K+G   LA  L ++M  +    D  ++N +I +      K + +  AL  F
Sbjct: 152 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLC----KYRHVDDALNLF 207

Query: 74  QKM--KGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           ++M  KG+   +PN+VTY+ L+   C+  R  D  + L  ++ E  + P++ T+N ++DA
Sbjct: 208 KEMETKGI---RPNVVTYSSLISCLCSYGRWSD-ASQLLSDMIEKKINPNLVTFNALIDA 263

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K G   E E +   M      PDI T+N LI+ +      DK +Q+F+ ++     P 
Sbjct: 264 FVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPD 323

Query: 191 LPTFNSMIINYGKAR---------------------------LQG--------KAEYVFQ 215
           L T+N++I  + K++                           +QG         A+ VF+
Sbjct: 324 LDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 383

Query: 216 KMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           +M +    P  +TY   I + G C+N  + +A E+FD + K    + +     M+E  C 
Sbjct: 384 QMVSDGVPPDIMTYS--ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 441

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            G   +   LF +    GV P+  TY  +        + +    LLK+M+++G +P+
Sbjct: 442 AGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPD 498



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 145/305 (47%), Gaps = 13/305 (4%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CKPNIVT 88
           A+ L  +M   G RPD   +  LI   L   +KA   ++A+    +M  ++R C+PN+VT
Sbjct: 98  AVALVDQMVEMGYRPDTITFTTLIHG-LFLHNKA---SEAVALVDRM--VQRGCQPNLVT 151

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y +++    +  ++D    L  ++  + +  D+  +N ++D+  K   + +  ++   M+
Sbjct: 152 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEME 211

Query: 149 SNQCKPDIITFNLLID---SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
           +   +P+++T++ LI    SYG+   +    Q+   ++  K  P L TFN++I  + K  
Sbjct: 212 TKGIRPNVVTYSSLISCLCSYGR---WSDASQLLSDMIEKKINPNLVTFNALIDAFVKEG 268

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
              +AE +   M      P   TY  +I  +   D + +A+++F+ +        + T N
Sbjct: 269 KFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYN 328

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            +++ +C +    +   LF    + G+  D+ TY  L +        +  QK+ K+M  +
Sbjct: 329 TLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD 388

Query: 326 GIVPN 330
           G+ P+
Sbjct: 389 GVPPD 393



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 129/311 (41%), Gaps = 44/311 (14%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKALAKALG 71
           ++ LI    K+G+   A  L  +M      PD   YN+LI    +H R DKAK +     
Sbjct: 257 FNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM----- 311

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            F+ M   + C P++ TYN L++   +++ V+    LF+E+    L  D  TY  ++   
Sbjct: 312 -FEFMVSKD-CFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 369

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
             +G     + V  +M S+   PDI+T+++L+D        +K  +VF  +  S+ K  +
Sbjct: 370 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI 429

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             + +MI    KA   GK                                V    ++F  
Sbjct: 430 YIYTTMIEGMCKA---GK--------------------------------VDDGWDLFCS 454

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           LS  G    V T N M+   C   L  EA  L +     G  PDS TY  L +A+ +   
Sbjct: 455 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGD 514

Query: 312 KELVQKLLKRM 322
           K    +L++ M
Sbjct: 515 KAASAELIREM 525



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 151/343 (44%), Gaps = 11/343 (3%)

Query: 22  GKKGQTRLAMWLFSEMRNSGCRPDPSVY--NALITAHLHTRDKAKALAKALGYFQKMKGM 79
           GK  +   A+ LF  M  S  RP PS++  N L++A    + K   L  +L    KM  +
Sbjct: 18  GKDLKLDDAIGLFGGMVKS--RPLPSIFEFNKLLSAI--AKMKKFDLVISLALLGKMMKL 73

Query: 80  ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
              +P+IVT + LL      + +    AL  ++ E    PD  T+  ++     +    E
Sbjct: 74  GY-EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASE 132

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
             +++ RM    C+P+++T+ ++++   KR   D    +   +  +K +  +  FN++I 
Sbjct: 133 AVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIID 192

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
           +  K R    A  +F++M      P+ +TY  +I+        S A ++  ++ +   + 
Sbjct: 193 SLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINP 252

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            + T NA+++A+   G   EA+ L ++     + PD  TY  L   +   +  +  +++ 
Sbjct: 253 NLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMF 312

Query: 320 KRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRSLS 362
           + M      P+    L+   T       S+     T+L R +S
Sbjct: 313 EFMVSKDCFPD----LDTYNTLIKGFCKSKRVEDGTELFREMS 351



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 5/163 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
            R  + DT  Y+ LI  +   G    A  +F +M + G  PD   Y+ L+    +     
Sbjct: 352 HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 411

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           KAL +   Y QK       K +I  Y  ++    +A  VD    LF  L    + P++ T
Sbjct: 412 KAL-EVFDYMQK----SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVT 466

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
           YN ++       +++E  ++L +MK +   PD  T+N LI ++
Sbjct: 467 YNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAH 509



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 84/206 (40%), Gaps = 8/206 (3%)

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ--VFKSLMHSKE 187
           ++GK+  + +   +   M  ++  P I  FN L+ +  K + FD +    +   +M    
Sbjct: 16  SWGKDLKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGY 75

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P++ T +S++  Y   +    A  +  +M  M Y P  IT+  +I      +  S A  
Sbjct: 76  EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 135

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYK 304
           + D + + G    + T   ++   C  G   + DL F   + M    +  D   +  +  
Sbjct: 136 LVDRMVQRGCQPNLVTYGVVVNGLCKRG---DIDLAFNLLNKMEAAKIEADVVIFNTIID 192

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
           +  K    +    L K ME  GI PN
Sbjct: 193 SLCKYRHVDDALNLFKEMETKGIRPN 218


>gi|225447241|ref|XP_002272784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g73710-like [Vitis vinifera]
          Length = 1008

 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 163/367 (44%), Gaps = 41/367 (11%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T  Y+ LI + GK G+ + A  +F+EM   G   D   +N +I    +T      L++A 
Sbjct: 345 TATYNTLIDLYGKAGRLKDAADVFAEMLKLGVAMDTITFNTMI----YTCGSHGHLSEAE 400

Query: 71  GYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               +M+  ER   P+  TYNI L   A   N+D     ++++ E  L PD+ T+  V+ 
Sbjct: 401 TLLTEME--ERGISPDTKTYNIFLSLYADGGNIDAALKCYRKIREVGLFPDVVTHRAVLH 458

Query: 130 AYGKNGMIKEMESVLSRMKSNQCK------PDII-------------------------- 157
              +  M+ E+E+V++ MK ++ +      P +I                          
Sbjct: 459 VLCERNMVGEVETVIAEMKRSRVRVDEHSIPVVIKMYVNEGLLDKAKIFLEEHLLEDELS 518

Query: 158 --TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
             T   +ID+Y ++  + + E VF       +K  +  +N M+  YGKA+L  KA  +F+
Sbjct: 519 SRTRVAIIDAYAEKGLWAEAENVFIGKRDLGQKKDVVEYNVMVKAYGKAKLYDKAFSLFK 578

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            M      P+  TY  +I M+   D V  AR I  E+ K+G   +  T +A++  Y   G
Sbjct: 579 GMRNHGTWPNESTYNSLIQMFSGGDLVDEARGILAEMQKMGFKPQCLTFSAVIACYARLG 638

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335
              +A  ++E    +GV P+   Y  L   +++    E      ++M++ GI  N+    
Sbjct: 639 RLPDAVGVYEEMVRLGVKPNEVVYGSLINGFSETGNVEEALCYFRKMDEFGISANQIVLT 698

Query: 336 EALETFS 342
             ++ +S
Sbjct: 699 SLIKAYS 705



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 144/348 (41%), Gaps = 39/348 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  ++ +I   G  G    A  L +EM   G  PD   YN  ++ +    +    +  A
Sbjct: 379 DTITFNTMIYTCGSHGHLSEAETLLTEMEERGISPDTKTYNIFLSLYADGGN----IDAA 434

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD--------- 120
           L  ++K++ +    P++VT+  +L    +   V +V  +  E+  S +  D         
Sbjct: 435 LKCYRKIREVG-LFPDVVTHRAVLHVLCERNMVGEVETVIAEMKRSRVRVDEHSIPVVIK 493

Query: 121 IYTYNG-------------------------VMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
           +Y   G                         ++DAY + G+  E E+V    +    K D
Sbjct: 494 MYVNEGLLDKAKIFLEEHLLEDELSSRTRVAIIDAYAEKGLWAEAENVFIGKRDLGQKKD 553

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
           ++ +N+++ +YGK + +DK   +FK + +    P   T+NS+I  +    L  +A  +  
Sbjct: 554 VVEYNVMVKAYGKAKLYDKAFSLFKGMRNHGTWPNESTYNSLIQMFSGGDLVDEARGILA 613

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
           +M  M + P  +T+  +I  Y     +  A  +++E+ +LG         +++  +   G
Sbjct: 614 EMQKMGFKPQCLTFSAVIACYARLGRLPDAVGVYEEMVRLGVKPNEVVYGSLINGFSETG 673

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
              EA   F      G++ +      L KAY+K    E  + L + M+
Sbjct: 674 NVEEALCYFRKMDEFGISANQIVLTSLIKAYSKVGCLEGAKTLYEGMK 721



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 119/284 (41%), Gaps = 21/284 (7%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           + L  F+ +K  E   PN++ YN++LR   +A+  D++   + E+ ++ + P   TY  +
Sbjct: 166 RVLRVFEWIKSQEDYVPNVIHYNVVLRVLGRAQKWDELRLCWIEMAKNGVLPTNNTYGML 225

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK- 186
           +D YGK G++KE    +  MK     PD +  N ++        FD  ++ ++     K 
Sbjct: 226 VDVYGKAGLVKEALLWIKHMKLRGVFPDEVAMNTVVRVLKDAGEFDWADRFYRDWCVGKV 285

Query: 187 ---------------EKPTLPTFNSMIINYGKARLQGKAEYV----FQKMTAMKYTPSFI 227
                          E  + P      ++    ++ G+               +  P   
Sbjct: 286 ELGDFDLESVADSDDEIGSAPVSLKHFLSTELFKIGGRRPISNIMDSSNTDGSRRKPRLT 345

Query: 228 -TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
            TY  +I +YG    +  A ++F E+ KLG  M   T N M+     +G  +EA+ L   
Sbjct: 346 ATYNTLIDLYGKAGRLKDAADVFAEMLKLGVAMDTITFNTMIYTCGSHGHLSEAETLLTE 405

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
               G++PD+ TY +    Y      +   K  +++ + G+ P+
Sbjct: 406 MEERGISPDTKTYNIFLSLYADGGNIDAALKCYRKIREVGLFPD 449



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 121/265 (45%), Gaps = 2/265 (0%)

Query: 81  RCKPNIV-TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
           R KP +  TYN L+    +A  +     +F E+ +  +A D  T+N ++   G +G + E
Sbjct: 339 RRKPRLTATYNTLIDLYGKAGRLKDAADVFAEMLKLGVAMDTITFNTMIYTCGSHGHLSE 398

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
            E++L+ M+     PD  T+N+ +  Y      D   + ++ +      P + T  +++ 
Sbjct: 399 AETLLTEMEERGISPDTKTYNIFLSLYADGGNIDAALKCYRKIREVGLFPDVVTHRAVLH 458

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
              +  + G+ E V  +M   +      +   +I MY     + +A+ IF E   L  ++
Sbjct: 459 VLCERNMVGEVETVIAEMKRSRVRVDEHSIPVVIKMYVNEGLLDKAK-IFLEEHLLEDEL 517

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
              T  A+++AY   GL  EA+ +F    ++G   D   Y ++ KAY KA + +    L 
Sbjct: 518 SSRTRVAIIDAYAEKGLWAEAENVFIGKRDLGQKKDVVEYNVMVKAYGKAKLYDKAFSLF 577

Query: 320 KRMEQNGIVPNKRFFLEALETFSSS 344
           K M  +G  PN+  +   ++ FS  
Sbjct: 578 KGMRNHGTWPNESTYNSLIQMFSGG 602



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 121/262 (46%), Gaps = 1/262 (0%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           K ++V YN++++A  +A+  D+  +LFK +      P+  TYN ++  +    ++ E   
Sbjct: 551 KKDVVEYNVMVKAYGKAKLYDKAFSLFKGMRNHGTWPNESTYNSLIQMFSGGDLVDEARG 610

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +L+ M+    KP  +TF+ +I  Y +         V++ ++    KP    + S+I  + 
Sbjct: 611 ILAEMQKMGFKPQCLTFSAVIACYARLGRLPDAVGVYEEMVRLGVKPNEVVYGSLINGFS 670

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           +     +A   F+KM     + + I    +I  Y     +  A+ +++ +  L     + 
Sbjct: 671 ETGNVEEALCYFRKMDEFGISANQIVLTSLIKAYSKVGCLEGAKTLYEGMKDLEGGPDIV 730

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
             N+M+  Y   GL +EA L+F++    G + D  ++  +   Y    M +    +   M
Sbjct: 731 ASNSMINLYADLGLVSEAKLIFDDLRQKG-SADGVSFATMMYLYKNLGMLDEAIDVADEM 789

Query: 323 EQNGIVPNKRFFLEALETFSSS 344
           +Q+G++ +   F + +  ++++
Sbjct: 790 KQSGLLRDCASFNKVMACYATN 811



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 134/332 (40%), Gaps = 8/332 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y  LI    + G    A+  F +M   G   +  V  +LI A+     K   L  A   
Sbjct: 661 VYGSLINGFSETGNVEEALCYFRKMDEFGISANQIVLTSLIKAY----SKVGCLEGAKTL 716

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           ++ MK +E   P+IV  N ++   A    V +   +F +L +   A D  ++  +M  Y 
Sbjct: 717 YEGMKDLE-GGPDIVASNSMINLYADLGLVSEAKLIFDDLRQKGSA-DGVSFATMMYLYK 774

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
             GM+ E   V   MK +    D  +FN ++  Y          ++   ++  +  P   
Sbjct: 775 NLGMLDEAIDVADEMKQSGLLRDCASFNKVMACYATNGQLSACGELLHEMISRRILPDTG 834

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           TF  M     K  L    E V Q  ++ +    +     I +++      + A E  +  
Sbjct: 835 TFKVMFTVLKKGGL--PTEAVTQLESSYQEGKPYARQAVITSVFSTVGLHAFALESCETF 892

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
                D+  S  N  + AY  +G   +A  +F    + G+ PD  TY  L   Y KA M 
Sbjct: 893 LNAEVDLDSSFYNVAIYAYGASGSIDKALKMFMKMQDEGLEPDLVTYINLAGCYGKAGML 952

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           E ++++  +++   I PN+  F   ++ + S+
Sbjct: 953 EGLKRIYSQLKYREIEPNESLFKAIIDAYRSA 984



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 87/189 (46%), Gaps = 9/189 (4%)

Query: 5    RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD-KA 63
            R  + DTG +  +  V+ K G    A+   +++ +S     P    A+IT+   T    A
Sbjct: 827  RRILPDTGTFKVMFTVLKKGGLPTEAV---TQLESSYQEGKPYARQAVITSVFSTVGLHA 883

Query: 64   KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             AL     +      ++        YN+ + A   + ++D+   +F ++ +  L PD+ T
Sbjct: 884  FALESCETFLNAEVDLDSS-----FYNVAIYAYGASGSIDKALKMFMKMQDEGLEPDLVT 938

Query: 124  YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
            Y  +   YGK GM++ ++ + S++K  + +P+   F  +ID+Y   +  D  E V + + 
Sbjct: 939  YINLAGCYGKAGMLEGLKRIYSQLKYREIEPNESLFKAIIDAYRSAKRHDLAELVSQEMK 998

Query: 184  HSKEKPTLP 192
             + +   LP
Sbjct: 999  FAFDTTMLP 1007



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 88/221 (39%), Gaps = 19/221 (8%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ   + D   ++K++A     GQ      L  EM +    PD   +  + T        
Sbjct: 790 KQSGLLRDCASFNKVMACYATNGQLSACGELLHEMISRRILPDTGTFKVMFTVLKKGGLP 849

Query: 63  AKALAKALGYFQKMKGMER------CKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
            +A+ +    +Q+ K   R          +  +   L +C    N +             
Sbjct: 850 TEAVTQLESSYQEGKPYARQAVITSVFSTVGLHAFALESCETFLNAE------------- 896

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           +  D   YN  + AYG +G I +   +  +M+    +PD++T+  L   YGK    + ++
Sbjct: 897 VDLDSSFYNVAIYAYGASGSIDKALKMFMKMQDEGLEPDLVTYINLAGCYGKAGMLEGLK 956

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           +++  L + + +P    F ++I  Y  A+    AE V Q+M
Sbjct: 957 RIYSQLKYREIEPNESLFKAIIDAYRSAKRHDLAELVSQEM 997


>gi|125575133|gb|EAZ16417.1| hypothetical protein OsJ_31886 [Oryza sativa Japonica Group]
          Length = 678

 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 9/261 (3%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           L+ ++ K    + A+ +  E+   GC+PD   YNALI+A      KA  L  A     ++
Sbjct: 362 LVDLVCKNCGPQKALEVLDELSLEGCQPDVVTYNALISASC----KAGRLNDAKFILTRL 417

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
              E  +PN  TY ILL A    R  D+V  L +++++    PD+ TYN  ++ + K G 
Sbjct: 418 AA-EGLEPNGTTYCILLHALCNMRRWDEVCDLLEDMNQVNRDPDVTTYNIFINYFCKYGH 476

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           + +   VL RM  N C PDI+T N L+++  K+   ++   + + +  +  K  L T+N+
Sbjct: 477 LDQAIDVLERMVINNCSPDIVTCNTLLNAISKKGMVEEALGIARCIRENGYKLVLITYNT 536

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSK 254
           +I    K     KA  +F +M +   +P  ITY  ++   G+C  D    A ++ +++  
Sbjct: 537 LIDALAKKAEVKKAMVLFDEMLSDGISPDDITYGSLV--MGFCKKDMADEALDLLNQMLT 594

Query: 255 LGKDMKVSTLNAMLEAYCMNG 275
           LG ++K +T   +++A C +G
Sbjct: 595 LGFEVKTTTFVMVIQALCRDG 615



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 138/350 (39%), Gaps = 40/350 (11%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I +T    ++I  + K G+   A  +   M  SG  PD    N LI A L    +   L+
Sbjct: 248 IPETKCCVRIIRGLVKTGKANKARHVLEVMVLSGGVPDTISCNMLI-AQLC---RGGQLS 303

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            AL   + M+    C P+ +T+N L+R     R  D+  + +KE       P   T   +
Sbjct: 304 SALQVLEDMR-FSGCSPSGITFNTLIRCMFNQRMYDRAISFWKEQLRLGWPPYEMTSTLL 362

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR------------------ 169
           +D   KN   ++   VL  +    C+PD++T+N LI +  K                   
Sbjct: 363 VDLVCKNCGPQKALEVLDELSLEGCQPDVVTYNALISASCKAGRLNDAKFILTRLAAEGL 422

Query: 170 -----------------QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
                            + +D++  + + +      P + T+N  I  + K     +A  
Sbjct: 423 EPNGTTYCILLHALCNMRRWDEVCDLLEDMNQVNRDPDVTTYNIFINYFCKYGHLDQAID 482

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           V ++M     +P  +T   ++        V  A  I   + + G  + + T N +++A  
Sbjct: 483 VLERMVINNCSPDIVTCNTLLNAISKKGMVEEALGIARCIRENGYKLVLITYNTLIDALA 542

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
                 +A +LF+   + G++PD  TY  L   + K +M +    LL +M
Sbjct: 543 KKAEVKKAMVLFDEMLSDGISPDDITYGSLVMGFCKKDMADEALDLLNQM 592



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 91/215 (42%), Gaps = 6/215 (2%)

Query: 112 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171
           LH  I  P+      ++    K G   +   VL  M  +   PD I+ N+LI    +   
Sbjct: 244 LHGQI--PETKCCVRIIRGLVKTGKANKARHVLEVMVLSGGVPDTISCNMLIAQLCRGGQ 301

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
                QV + +  S   P+  TFN++I      R+  +A   +++   + + P  +T   
Sbjct: 302 LSSALQVLEDMRFSGCSPSGITFNTLIRCMFNQRMYDRAISFWKEQLRLGWPPYEMTSTL 361

Query: 232 IITMYGYCDNVS--RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289
           ++ +   C N    +A E+ DELS  G    V T NA++ A C  G   +A  +      
Sbjct: 362 LVDLV--CKNCGPQKALEVLDELSLEGCQPDVVTYNALISASCKAGRLNDAKFILTRLAA 419

Query: 290 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
            G+ P+ +TY +L  A       + V  LL+ M Q
Sbjct: 420 EGLEPNGTTYCILLHALCNMRRWDEVCDLLEDMNQ 454


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 150/316 (47%), Gaps = 13/316 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ +I  + K G+   A  +  +M+  GC P+   YN LI  +       K + KA    
Sbjct: 226 FNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGK-MYKADAVL 284

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M   +   PN+ T+NIL+    +  N+     +FKE+ +  + P++ +YN +++    
Sbjct: 285 KEMVEND-VSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCN 343

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G I E  S+  +M S   +P++IT+N LI+ + K     +   +F S+      PT   
Sbjct: 344 GGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRM 403

Query: 194 FNSMIINYGKARLQGKAEYVF---QKMTAMKYTPSFITYECIITMYGYC--DNVSRAREI 248
           +N +I  Y K    GK +  F   ++M      P   TY C+I   G C   N+  A+++
Sbjct: 404 YNMLIDAYCKL---GKIDDGFALKEEMEREGIVPDVGTYNCLIA--GLCRNGNIEAAKKL 458

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           FD+L+  G    + T + ++E YC  G   +A +L +    MG+ P   TY ++ K Y K
Sbjct: 459 FDQLTSKGLP-DLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCK 517

Query: 309 ANMKELVQKLLKRMEQ 324
               +    +  +ME+
Sbjct: 518 EGNLKAATNMRTQMEK 533



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 128/265 (48%), Gaps = 14/265 (5%)

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           GY+        CKP      +++    + R+ D V  ++KE+    + P+++T+N V++A
Sbjct: 180 GYYGYKLSALSCKP------LMIALLKENRSAD-VEYVYKEMIRRKIQPNVFTFNVVINA 232

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM---EQVFKSLMHSKE 187
             K G + +   V+  MK   C P+++++N LID Y K     KM   + V K ++ +  
Sbjct: 233 LCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDV 292

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRA 245
            P L TFN +I  + K      +  VF++M      P+ I+Y  +I   G C+   +S A
Sbjct: 293 SPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLIN--GLCNGGKISEA 350

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             + D++   G    + T NA++  +C N +  EA  +F +    G  P +  Y +L  A
Sbjct: 351 ISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDA 410

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
           Y K    +    L + ME+ GIVP+
Sbjct: 411 YCKLGKIDDGFALKEEMEREGIVPD 435



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 120/252 (47%), Gaps = 7/252 (2%)

Query: 81  RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY---GKNGMI 137
           + +PN+ T+N+++ A  +   +++   + +++     +P++ +YN ++D Y   G NG +
Sbjct: 218 KIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKM 277

Query: 138 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 197
            + ++VL  M  N   P++ TFN+LID + K        +VFK ++    KP + ++NS+
Sbjct: 278 YKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSL 337

Query: 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKL 255
           I          +A  +  KM +    P+ ITY  +I   G+C N  +  A ++F  +   
Sbjct: 338 INGLCNGGKISEAISMRDKMVSAGVQPNLITYNALIN--GFCKNDMLKEALDMFGSVKGQ 395

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
           G        N +++AYC  G   +   L E     G+ PD  TY  L     +    E  
Sbjct: 396 GAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAA 455

Query: 316 QKLLKRMEQNGI 327
           +KL  ++   G+
Sbjct: 456 KKLFDQLTSKGL 467



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 98/227 (43%), Gaps = 6/227 (2%)

Query: 109 FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS--RMKSNQCKPDIITFNLLIDSY 166
           FK LH    A         +D + +NG   ++ S+     M  N C   II  ++L+ +Y
Sbjct: 105 FKLLHSLANAKRYSKIRSFLDGFVRNGSDHQVHSIFHAISMCDNVCVNSIIA-DMLVLAY 163

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
                F+   + FK   +   K +  +   ++I   K       EYV+++M   K  P+ 
Sbjct: 164 ANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNV 223

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM---NGLPTEADLL 283
            T+  +I        +++AR++ +++   G    V + N +++ YC    NG   +AD +
Sbjct: 224 FTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAV 283

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +      V+P+ +T+ +L   + K +      K+ K M    + PN
Sbjct: 284 LKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPN 330



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 7/193 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K +  +  T +Y+ LI    K G+      L  EM   G  PD   YN LI      R+ 
Sbjct: 393 KGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGL--CRNG 450

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
               AK L      KG+    P++VT++IL+    +     +   L KE+ +  L P   
Sbjct: 451 NIEAAKKLFDQLTSKGL----PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHL 506

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           TYN VM  Y K G +K   ++ ++M K  + + ++ ++N+L+  Y ++   +    +   
Sbjct: 507 TYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNE 566

Query: 182 LMHSKEKPTLPTF 194
           ++     P   T+
Sbjct: 567 MLEKGLVPNRITY 579



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 4/122 (3%)

Query: 23  KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82
           +KG++R A  L  EM   G +P    YN ++  +     K   L  A     +M+   R 
Sbjct: 482 RKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYC----KEGNLKAATNMRTQMEKERRL 537

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           + N+ +YN+LL+  +Q   ++  N L  E+ E  L P+  TY  V +     G + ++E 
Sbjct: 538 RMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDQGFVPDIEG 597

Query: 143 VL 144
            L
Sbjct: 598 HL 599



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 7/156 (4%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D G Y+ LIA + + G    A  LF ++ + G  PD   ++ L+  +    +  KA A
Sbjct: 433 VPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKA-A 490

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH-ESILAPDIYTYNG 126
             L    KM G+   KP  +TYNI+++   +  N+     +  ++  E  L  ++ +YN 
Sbjct: 491 MLLKEMSKM-GL---KPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNV 546

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           ++  Y + G +++   +L+ M      P+ IT+ ++
Sbjct: 547 LLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIV 582


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 141/331 (42%), Gaps = 19/331 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  + ++GQ R A+ +  +M   GC PD   YN L+          +A  K  GY 
Sbjct: 170 YNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILL----------EATCKGRGYR 219

Query: 74  QKMKGM-----ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           Q M+ +     E C PN VTYN+L+       +VD    L + L      P    YN V+
Sbjct: 220 QAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVL 279

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
                     + + +++ M    C P+  TFN++I S  ++    +  Q+ + +      
Sbjct: 280 KGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCT 339

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS--RAR 246
             + T+N++I    + R    A  +  KM +    P  +TY  ++   G C       A 
Sbjct: 340 ANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLK--GLCSAAQWVDAE 397

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+ D +++ G      T N ++   C  GL  +A  +F+   + G TP+S TY  +    
Sbjct: 398 ELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGL 457

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEA 337
            KA   +   +L   M   G  P+K + L A
Sbjct: 458 AKATKLDQALELFNEMGHKGFNPDKIYQLLA 488



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 125/290 (43%), Gaps = 9/290 (3%)

Query: 43  RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
           +P+   YN LI    HT  +   +  AL     M     C P++VTYNILL A  + R  
Sbjct: 164 QPNAYTYNPLI----HTLCERGQVRDALSVLDDML-CRGCAPDVVTYNILLEATCKGRGY 218

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
            Q   L   +      P+  TYN +MD     G + +   +L  + S+ CKP  + +N +
Sbjct: 219 RQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTV 278

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           +      + +   +++   ++     P   TFN +I +  +  L  +A  + +KM+    
Sbjct: 279 LKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGC 338

Query: 223 TPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
           T + +TY  II   G C+  NV  A  +  ++   G    + T N +L+  C      +A
Sbjct: 339 TANIVTYNAIIN--GLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDA 396

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + L +N    G  PD+ T+  L     +  +     ++ K+M   G  PN
Sbjct: 397 EELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPN 446



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 35/370 (9%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R    D   Y+ L+    K    R AM L   MR  GC P+   YN L+       D   
Sbjct: 196 RGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDD 255

Query: 65  AL------------AKALGYFQKMKGM------------------ERCKPNIVTYNILLR 94
           AL               + Y   +KG+                  E C PN  T+N+++ 
Sbjct: 256 ALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIY 315

Query: 95  ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
           +  +   + Q   L +++ +     +I TYN +++   +   +     +LS+MKS  CKP
Sbjct: 316 SLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKP 375

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           DI+T+N L+        +   E++  ++  +   P   TFN++I    +  L   A  VF
Sbjct: 376 DIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVF 435

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           ++M     TP+ ITY  II+       + +A E+F+E+    K      +  +L A C+N
Sbjct: 436 KQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGH--KGFNPDKIYQLL-AECLN 492

Query: 275 GLPT--EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
              T  EA        + G++P +  Y  +     +    E    ++  M  +G +P+  
Sbjct: 493 DDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDL 552

Query: 333 FFLEALETFS 342
            ++  +E  +
Sbjct: 553 TYVILIEGLA 562



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 124/294 (42%), Gaps = 12/294 (4%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           L +EM    C P+ + +N +I    ++  +   L +A+   +KM     C  NIVTYN +
Sbjct: 294 LVTEMLRENCPPNEATFNVVI----YSLCRKGLLQQAIQLLEKMS-KHGCTANIVTYNAI 348

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    + RNVD    L  ++      PDI TYN ++          + E ++  M  N C
Sbjct: 349 INGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGC 408

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            PD +TFN LI    ++       +VFK +      P   T++++I    KA    +A  
Sbjct: 409 LPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALE 468

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +F +M    + P  I Y+ +       D +  A +   +L   G        NA+L   C
Sbjct: 469 LFNEMGHKGFNPDKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLC 527

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLL-----YKAYTKANMKELVQKLLKR 321
            NG    A  +     + G  PD  TY +L     Y+ Y     +EL+ KL  R
Sbjct: 528 RNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLN-EARELLIKLCSR 580



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 142/329 (43%), Gaps = 19/329 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSV--YNALITAHLHTRDKAKALA 67
           D  + ++L+  + ++G+   A     E     C P  +V  Y AL   +          A
Sbjct: 102 DAALANRLVRDLCRRGRPDDA-----ERVVGACGPAATVVAYGALTDGYCR--------A 148

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
             LG  +++ G    +PN  TYN L+    +   V    ++  ++     APD+ TYN +
Sbjct: 149 GRLGDARRVVGGMPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNIL 208

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++A  K    ++   ++  M++  C P+ +T+N+L+D        D   ++ ++L     
Sbjct: 209 LEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGC 268

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRA 245
           KP+   +N+++     A   G A+ +  +M      P+  T+  +I  Y  C    + +A
Sbjct: 269 KPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVI--YSLCRKGLLQQA 326

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            ++ +++SK G    + T NA++   C       A  L     + G  PD  TY  L K 
Sbjct: 327 IQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKG 386

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFF 334
              A      ++L+  M QNG +P+   F
Sbjct: 387 LCSAAQWVDAEELMDNMTQNGCLPDNVTF 415



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 79/162 (48%), Gaps = 6/162 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           Q   + D   ++ LI  + +KG    A+ +F +M + GC P+   Y+ +I+       KA
Sbjct: 405 QNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLA----KA 460

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L +AL  F +M G +   P+ + Y +L         +++     ++L +S ++P    
Sbjct: 461 TKLDQALELFNEM-GHKGFNPDKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVL 518

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
           YN ++    +NG  +    +++ M S+ C PD +T+ +LI+ 
Sbjct: 519 YNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEG 560


>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 627

 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 147/332 (44%), Gaps = 14/332 (4%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG--CRPDPSVYNALITAHLHTRDK 62
           R  I D   Y+ L+  +  + +++ A+ L   M + G  C PD   Y+ +I       D 
Sbjct: 45  RRGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDL 104

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K L             +R  PN+VTYN ++ A  +A+ VD+   +   + +S + PD  
Sbjct: 105 DKMLD------------QRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCM 152

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++  +  +G  KE    L +M+S+  +PD++T+N L+D   K     +  ++F S+
Sbjct: 153 TYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSM 212

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                KP + T+ +++  Y       +   +   M      P+   +  ++  Y   + V
Sbjct: 213 TKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKV 272

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A  +F ++ + G +    T   +++  C +G   +A L FE   + G+ PDS  Y  L
Sbjct: 273 EEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSL 332

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
             +    +  E  ++L   M   GI  +  FF
Sbjct: 333 IHSLCIFDKWEKAEELFLEMLDRGICLSTIFF 364



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 129/285 (45%), Gaps = 5/285 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +IA + K      AM + + M  SG  PD   YN+++     +    +A+     + 
Sbjct: 119 YNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIV----FL 174

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KM+  +  +P++VTYN L+    +     +   +F  + +  L PDI TY  ++  Y  
Sbjct: 175 KKMRS-DGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYAT 233

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + EM  +L  M  N   P+   F++L+ +Y K++  ++   VF  +      P   T
Sbjct: 234 KGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVT 293

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + ++I    K+     A   F++M      P  I Y  +I      D   +A E+F E+ 
Sbjct: 294 YGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEML 353

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             G  +     N++++++C  G   E+  LF+    +GV PD  T
Sbjct: 354 DRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIIT 398



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 134/317 (42%), Gaps = 25/317 (7%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           ++S L+    K+ +   AM +FS+MR  G  P+   Y  +I        K+  +  A+ Y
Sbjct: 258 VFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLC----KSGRVEDAMLY 313

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F++M   E  +P+ + YN L+ +       ++   LF E+ +  +      +N ++D++ 
Sbjct: 314 FEQMID-EGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHC 372

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA-FDKMEQVFKSLMHSKEKPTL 191
           K G + E   +   M     KPDIIT    + S  +  + F  +  +F ++ ++ +K   
Sbjct: 373 KEGRVIESGKLFDLMVRIGVKPDIITLGRFLGSARRDYSLFVNIYFIFTNMSNTGDKEKE 432

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIF 249
              N+   N       G               P   TY   I ++G C N     A  +F
Sbjct: 433 TPVNTNGGNTASNSSGG---------------PFLGTYN--IILHGLCKNKLTDDALRMF 475

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             L  +   ++  T N M++A    G   EA  LF    + G+ P+  TY+L+ +     
Sbjct: 476 QNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQ 535

Query: 310 NMKELVQKLLKRMEQNG 326
            + E + +L   ME NG
Sbjct: 536 GLLEELDQLFLSMEDNG 552


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 156/364 (42%), Gaps = 52/364 (14%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L+  + ++G+   A+ L   M   G +P+   Y  ++       D   AL       
Sbjct: 180 FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSAL----NLL 235

Query: 74  QKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           +KM+ + R KPN+V Y+ ++    +  R  D  N LF E+ E  ++P+++TYN +++ + 
Sbjct: 236 RKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQN-LFSEMQEKGISPNLFTYNCMINGFC 294

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
            +G   E + +L  M   +  PD++TF++LI++  K   F + E+++  ++     P   
Sbjct: 295 SSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTI 354

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY---------------- 236
           T+NSMI  + K      AE +F  M     +P  IT+  +I  Y                
Sbjct: 355 TYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEM 414

Query: 237 -----------------GYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
                            G+C   N++ A ++  E+   G    V T N +L+  C NG  
Sbjct: 415 SRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKL 474

Query: 278 TEADLLF----------ENSHNMG-VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
            +A  +F          + SH    V PD  TY +L             ++L + M   G
Sbjct: 475 KDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRG 534

Query: 327 IVPN 330
           +VP+
Sbjct: 535 LVPD 538



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 146/328 (44%), Gaps = 21/328 (6%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R  I +T  Y+ +I    K+ +   A  +F  M   GC PD   ++ LI  +      AK
Sbjct: 347 RGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYC----GAK 402

Query: 65  ALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +   +    +M  +G+     N +TY  L+    Q  N++    L +E+  S + P++ 
Sbjct: 403 RVDDGMKLLHEMSRRGL---VANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVV 459

Query: 123 TYNGVMDAYGKNGMIK---EMESVLSRMKS--------NQCKPDIITFNLLIDSYGKRQA 171
           T N ++D    NG +K   EM  V+ + K         N  +PD+ T+N+LI        
Sbjct: 460 TCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGK 519

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
           F + E++++ + H    P   T+NS+I    K     +A  +F  M +  ++P  +T+  
Sbjct: 520 FSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTT 579

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           +I  Y     V    E+F E+ + G      T   ++  +C  G    A  +F+   + G
Sbjct: 580 LINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSG 639

Query: 292 VTPDSSTYK-LLYKAYTKANMKELVQKL 318
           V PD+ T + +L   ++K  +K  VQ L
Sbjct: 640 VYPDTITIRNMLTGLWSKEELKRAVQCL 667



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 151/336 (44%), Gaps = 30/336 (8%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IYS +I  + K G+   A  LFSEM+  G  P+   YN +I     +   ++A       
Sbjct: 250 IYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREM 309

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F++     +  P++VT+++L+ A  +     +   L+ E+    + P+  TYN ++D + 
Sbjct: 310 FER-----KMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFS 364

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY-GKRQAFDKMEQVFKSLMHSKEKPTL 191
           K   +   E +   M +  C PD+ITF++LID Y G ++  D M+     L+H   +  L
Sbjct: 365 KQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMK-----LLHEMSRRGL 419

Query: 192 P----TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRA 245
                T+ ++I  + +      A  + Q+M +    P+ +T  C   + G C+N  +  A
Sbjct: 420 VANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVT--CNTLLDGLCNNGKLKDA 477

Query: 246 REIFDELSKLGKDM-----------KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
            E+F  + K   D+            V T N ++      G  +EA+ L+E   + G+ P
Sbjct: 478 LEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVP 537

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           D+ TY  +     K +  +   ++   M   G  P+
Sbjct: 538 DTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPD 573



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 149/343 (43%), Gaps = 26/343 (7%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R    D   +S LI  + K+G+   A  L++EM   G  P+   YN++I      +++ 
Sbjct: 311 ERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDG-FSKQNRL 369

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            A A+ + Y    KG   C P+++T++IL+     A+ VD    L  E+    L  +  T
Sbjct: 370 DA-AERMFYLMATKG---CSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTIT 425

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++  + + G +     +L  M S+   P+++T N L+D            ++FK + 
Sbjct: 426 YTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQ 485

Query: 184 HSK-----------EKPTLPTFNSMI---INYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
            SK            +P + T+N +I   IN GK     +AE ++++M      P  ITY
Sbjct: 486 KSKMDLDASHPFNDVEPDVQTYNILICGLINEGKF---SEAEELYEEMPHRGLVPDTITY 542

Query: 230 ECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
             +I   G C    +  A ++FD +   G    V T   ++  YC  G   +   +F   
Sbjct: 543 NSVID--GLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEM 600

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              G+  ++ TY+ L   + +         + + M  +G+ P+
Sbjct: 601 GRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPD 643



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 108/267 (40%), Gaps = 54/267 (20%)

Query: 84  PNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           P++VT++ LL   C +    D+V+      H+ I  P++  +  +M+   + G + E  +
Sbjct: 144 PSLVTFSTLLHGLCVE----DRVSEALHFFHQ-ICKPNVIAFTTLMNGLCREGRVVEAVA 198

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKR-------QAFDKMEQVFKSLMHSKEKPTLPTFN 195
           +L RM  +  +P+ IT+  ++D   K            KME+V      S+ KP +  ++
Sbjct: 199 LLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEV------SRIKPNVVIYS 252

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
           ++I    K   Q  A+ +F +M     +P+  TY                          
Sbjct: 253 AIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTY-------------------------- 286

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
                    N M+  +C +G  +EA  L        ++PD  T+ +L  A  K       
Sbjct: 287 ---------NCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEA 337

Query: 316 QKLLKRMEQNGIVPNKRFFLEALETFS 342
           ++L   M   GI+PN   +   ++ FS
Sbjct: 338 EELYNEMLPRGIIPNTITYNSMIDGFS 364


>gi|255661192|gb|ACU25765.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 426

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 137/297 (46%), Gaps = 5/297 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YN++I        KAK   +
Sbjct: 42  GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFAPDLVAYNSMINVF----GKAKLFRE 97

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +M+      P+ V+Y  LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 98  ARSLINEMR-TAGVMPDTVSYTTLLTMHVENKRFLEALSVFAEMREIKCLLDLTTCNIMI 156

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +     +
Sbjct: 157 DVYGQLGMAKEADKLFWGMRKIGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIE 216

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSM++ YGK     KA  + Q+M      P+ ITY  II+++G    + RA  +
Sbjct: 217 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAML 276

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           F +L   G ++       M+ AY   GL   A  L          P  +   +L  A
Sbjct: 277 FQKLRNSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAAA 333



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 150/320 (46%), Gaps = 5/320 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI   GK+G    A+    +M       D  +Y+ LI       D +KA++  
Sbjct: 8   DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAIS-- 65

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F ++K      P++V YN ++    +A+   +  +L  E+  + + PD  +Y  ++ 
Sbjct: 66  --IFSRLK-RSGFAPDLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYTTLLT 122

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            + +N    E  SV + M+  +C  D+ T N++ID YG+     + +++F  +     +P
Sbjct: 123 MHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEP 182

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG      +A  + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+   G +    T + ++  +   G    A +LF+   N GV  D   Y+ +  AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYERA 302

Query: 310 NMKELVQKLLKRMEQNGIVP 329
            +    ++LL  +++   +P
Sbjct: 303 GLVAHAKRLLHELKRPDNIP 322



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 149/331 (45%), Gaps = 15/331 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L +EMR +G  PD   Y  L+T H+     
Sbjct: 71  KRSGFAPDLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMHVEN--- 127

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   +AL  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ 
Sbjct: 128 -KRFLEALSVFAEMREI-KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVV 185

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++  YG   +  E   +   M+    + +++T+N ++  YGK    +K   + + +
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
            +   +P   T++++I  +GK     +A  +FQK+         + Y+ +I  Y     V
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYERAGLV 305

Query: 243 SRAREIFDELSK---LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           + A+ +  EL +   + +D  +  L A        G   EA  +F  + + G   D + +
Sbjct: 306 AHAKRLLHELKRPDNIPRDTAIHILAAA-------GRJEEATWVFRQAIDAGEVKDITVF 358

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + L   ++K      V ++  +M +    P+
Sbjct: 359 ERLIHLFSKYKKYXNVVEVFDKMRERRYFPD 389



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 106/214 (49%)

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           L+PD YTY+ ++  +GK G+     S L +M+ ++   D++ ++ LI+   K   + K  
Sbjct: 5   LSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAI 64

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
            +F  L  S   P L  +NSMI  +GKA+L  +A  +  +M      P  ++Y  ++TM+
Sbjct: 65  SIFSRLKRSGFAPDLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMH 124

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                   A  +F E+ ++   + ++T N M++ Y   G+  EAD LF     +G+ P+ 
Sbjct: 125 VENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNV 184

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +Y  L + Y  A +      L + M++  I  N
Sbjct: 185 VSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 218



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 112/271 (41%), Gaps = 36/271 (13%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           +I V G+ G  + A  LF  MR  G  P+   YN L+  +      A+   +A+  F+ M
Sbjct: 155 MIDVYGQLGMAKEADKLFWGMRKIGIEPNVVSYNTLLRVY----GDAELFGEAIHLFRLM 210

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +  +  + N+VTYN ++    +    ++ N L +E+    + P+  TY+ ++  +GK G 
Sbjct: 211 Q-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGK 269

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSY--------GKR------------------- 169
           +     +  +++++  + D + +  +I +Y         KR                   
Sbjct: 270 LDRAAMLFQKLRNSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHI 329

Query: 170 -QAFDKMEQ---VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
             A  ++E+   VF+  + + E   +  F  +I  + K +       VF KM   +Y P 
Sbjct: 330 LAAAGRJEEATWVFRQAIDAGEVKDITVFERLIHLFSKYKKYXNVVEVFDKMRERRYFPD 389

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLG 256
                 ++  YG      +A  ++ E+   G
Sbjct: 390 SNVIALVLNAYGKLHEFEKANSVYMEMQDEG 420



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I++ GK G+   A  LF ++RNSG   D  +Y  +I A+    ++A  +A A    
Sbjct: 257 YSTIISIWGKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAY----ERAGLVAHAKRLL 312

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++K     +P+ +  +  +   A A  +++   +F++  ++    DI  +  ++  + K
Sbjct: 313 HELK-----RPDNIPRDTAIHILAAAGRJEEATWVFRQAIDAGEVKDITVFERLIHLFSK 367

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
                 +  V  +M+  +  PD     L++++YGK   F+K   V+
Sbjct: 368 YKKYXNVVEVFDKMRERRYFPDSNVIALVLNAYGKLHEFEKANSVY 413


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 143/317 (45%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I ++ K G+   A  +  EM + G  PD  +Y  LI        K   ++ A   F
Sbjct: 226 YNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFC----KLGNVSSAYRLF 281

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+   +  P+ +TY  ++    Q   V + + LF E+    L PD  TY  ++D Y K
Sbjct: 282 DEMQK-RKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCK 340

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +KE  S+ ++M      P+I+T+  L D   K    D   ++   +     +  + T
Sbjct: 341 EGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYT 400

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS++    KA    +A  + + M    + P  +TY  ++  Y     + RA E+  ++ 
Sbjct: 401 YNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQML 460

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
                  V T N ++  +CM+G+  + + L +     G+ P+++TY  L K Y   N   
Sbjct: 461 DRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMR 520

Query: 314 LVQKLLKRMEQNGIVPN 330
              ++ + M   G+VP+
Sbjct: 521 ATTEIYRGMCAKGVVPD 537



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 148/334 (44%), Gaps = 6/334 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQK++    D   Y+ +I  + + G+   A  LF EM      PD   Y ALI  +    
Sbjct: 284 MQKRK-ISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYC--- 339

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K   + +A     +M  M    PNIVTY  L     +   VD  N L  E+    L  +
Sbjct: 340 -KEGKMKEAFSLHNQMLQMG-LTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELN 397

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           IYTYN +++   K G I +   ++  M+     PD +T+  L+D+Y K +   +  ++ +
Sbjct: 398 IYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLR 457

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++  + +PT+ TFN ++  +  + +    E + + M      P+  TY  +I  Y   +
Sbjct: 458 QMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRN 517

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           N+    EI+  +   G     +T N +++ +C      EA  L  +    G     S+Y 
Sbjct: 518 NMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYN 577

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            L K + K       ++L ++M + G+V ++  +
Sbjct: 578 ALIKGFYKRKKFLEARELFEQMRREGLVADREIY 611



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 131/295 (44%), Gaps = 9/295 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI    K+G+ + A  L ++M   G  P+   Y AL         K   +  A
Sbjct: 327 DEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLC----KCGEVDTA 382

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
                +M  KG+E    NI TYN L+    +A N+DQ   L K++  +   PD  TY  +
Sbjct: 383 NELLHEMCRKGLEL---NIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTL 439

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           MDAY K+  +     +L +M   + +P ++TFN+L++ +      +  E++ K ++    
Sbjct: 440 MDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGI 499

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P   T+NS+I  Y           +++ M A    P   TY  +I  +    N+  A  
Sbjct: 500 MPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWF 559

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           +  ++   G ++ VS+ NA+++ +       EA  LFE     G+  D   Y + 
Sbjct: 560 LHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIF 614



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 132/302 (43%), Gaps = 6/302 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME--RCKPNIVTYN 90
           LF +M N G        N  I+      D  K   K     + ++ M+    KPN  TYN
Sbjct: 168 LFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKGEWVLKLIEEMQIKGLKPNPYTYN 227

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
            ++    +   V +   + +E+    +APD   Y  ++D + K G +     +   M+  
Sbjct: 228 GVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKR 287

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
           +  PD IT+  +I    +     + +++F  ++  + +P   T+ ++I  Y K     +A
Sbjct: 288 KISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEA 347

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
             +  +M  M  TP+ +TY  +      C  V  A E+  E+ + G ++ + T N+++  
Sbjct: 348 FSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNG 407

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA----NMKELVQKLLKRMEQNG 326
            C  G   +A  L ++    G  PD+ TY  L  AY K+       EL++++L R  Q  
Sbjct: 408 LCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPT 467

Query: 327 IV 328
           +V
Sbjct: 468 VV 469


>gi|414869157|tpg|DAA47714.1| TPA: hypothetical protein ZEAMMB73_516901 [Zea mays]
          Length = 853

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 150/309 (48%), Gaps = 10/309 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q  +  D   Y+ +I ++G+  Q  +   L  EM  + C+P    YN +I    H  
Sbjct: 350 LKRQPGFKHDGHTYTTMIGILGQARQFGVLKELLDEMSRAHCKPTVVTYNRII----HAY 405

Query: 61  DKAKALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
            +A  L +A+  F++M+  G E   P+ VTY  L+   A+A  +D    L+  + E  L+
Sbjct: 406 GRANYLKEAVKVFEEMQEAGYE---PDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLS 462

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD +TY+ +++  GK G +     +   M  N C P+++T+N++I    K + ++ + ++
Sbjct: 463 PDTFTYSVMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKL 522

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           +K +  +  +P   T++ ++   G      +AE VF +M    + P    Y  ++ ++G 
Sbjct: 523 YKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMR-RDWAPDEPVYGLLVDLWGK 581

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             NV +A   +  + + G    V T N++L A+       +A ++ +N    G+ P   T
Sbjct: 582 AGNVDKALGWYQAMLQDGLQPNVPTCNSLLSAFLKMNRFQDAYIVLQNMLARGLVPSVQT 641

Query: 299 YKLLYKAYT 307
           Y LL    T
Sbjct: 642 YTLLLSCCT 650



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 130/278 (46%), Gaps = 10/278 (3%)

Query: 81  RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140
            CKP +VTYN ++ A  +A  + +   +F+E+ E+   PD  TY  ++D + K G +   
Sbjct: 390 HCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIA 449

Query: 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
             +  RM+     PD  T++++++  GK        ++F  ++ +   P L T+N MI  
Sbjct: 450 MDLYGRMQEVGLSPDTFTYSVMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIAL 509

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK-LGKDM 259
             KAR       +++ M    + P  ITY  ++ + G+C ++  A  +F E+ +    D 
Sbjct: 510 QAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRRDWAPDE 569

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            V  L  +++ +   G   +A   ++     G+ P+  T   L  A+ K N  +    +L
Sbjct: 570 PVYGL--LVDLWGKAGNVDKALGWYQAMLQDGLQPNVPTCNSLLSAFLKMNRFQDAYIVL 627

Query: 320 KRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDL 357
           + M   G+VP       +++T++  L+    G A+  L
Sbjct: 628 QNMLARGLVP-------SVQTYTLLLSCCTVGQAQMGL 658



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 105/237 (44%), Gaps = 45/237 (18%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  YS ++  +GK GQ   A  LF EM  +GC P+                        
Sbjct: 464 DTFTYSVMVNCLGKGGQLAAAYKLFCEMIENGCTPN------------------------ 499

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                           +VTYNI++   A+ARN + V  L+K++  +   PD  TY+ VM+
Sbjct: 500 ----------------LVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVME 543

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
             G  G + E E+V   M+ +   PD   + LL+D +GK    DK    +++++    +P
Sbjct: 544 VLGHCGHLDEAEAVFIEMRRDWA-PDEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGLQP 602

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +PT NS++  + K      A  V Q M A    PS  TY  +++    C  V +A+
Sbjct: 603 NVPTCNSLLSAFLKMNRFQDAYIVLQNMLARGLVPSVQTYTLLLS----CCTVGQAQ 655



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 119/269 (44%), Gaps = 15/269 (5%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           ALG+FQ +K     K +  TY  ++    QAR    +  L  E+  +   P + TYN ++
Sbjct: 343 ALGFFQWLKRQPGFKHDGHTYTTMIGILGQARQFGVLKELLDEMSRAHCKPTVVTYNRII 402

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            AYG+   +KE   V   M+    +PD +T+  LID + K    D    ++  +      
Sbjct: 403 HAYGRANYLKEAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLS 462

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   T++ M+   GK      A  +F +M     TP+ +TY  +I +       ++AR  
Sbjct: 463 PDTFTYSVMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQ------AKARN- 515

Query: 249 FDELSKLGKDMKVS-------TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           ++ + KL KDM+V+       T + ++E     G   EA+ +F         PD   Y L
Sbjct: 516 YENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRR-DWAPDEPVYGL 574

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           L   + KA   +      + M Q+G+ PN
Sbjct: 575 LVDLWGKAGNVDKALGWYQAMLQDGLQPN 603



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 83/179 (46%)

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           K D  T+  +I   G+ + F  ++++   +  +  KPT+ T+N +I  YG+A    +A  
Sbjct: 357 KHDGHTYTTMIGILGQARQFGVLKELLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEAVK 416

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           VF++M    Y P  +TY  +I ++     +  A +++  + ++G      T + M+    
Sbjct: 417 VFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSVMVNCLG 476

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             G    A  LF      G TP+  TY ++     KA   E V KL K M+  G  P+K
Sbjct: 477 KGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDK 535


>gi|255661186|gb|ACU25762.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 426

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 136/297 (45%), Gaps = 5/297 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YNA+I        KAK   +
Sbjct: 42  GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFRE 97

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +M+      PN  +Y  LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 98  ARSLISEMR-TAGVMPNTASYTTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMI 156

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +      
Sbjct: 157 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIV 216

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSM++ YGK     KA  + Q+M      P+ ITY  II+++G    + RA  +
Sbjct: 217 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAML 276

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           F +L   G ++       M+ AY   GL   A  L     +    P  +   +L  A
Sbjct: 277 FQKLRSSGVEIDQVLYQTMIVAYEKAGLVAHAKRLLHELKSPDNIPRDTAIHILAGA 333



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 152/327 (46%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  
Sbjct: 61  SKAIS----IFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTA 115

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y  ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +
Sbjct: 116 SYTTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 175

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG     
Sbjct: 176 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEH 235

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + GV  D   Y+ +
Sbjct: 236 EKANNLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTM 295

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY KA +    ++LL  ++    +P
Sbjct: 296 IVAYEKAGLVAHAKRLLHELKSPDNIP 322



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 108/217 (49%)

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
           E  L+PD YTY+ ++  +GK G+     S L +M+ ++   D++ ++ LI+   K   + 
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           K   +F  L  S   P L  +N+MI  +GKA+L  +A  +  +M      P+  +Y  ++
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLL 121

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
           TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF     MG+ 
Sbjct: 122 TMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           P+  +Y  L + Y  A +      L + M++  IV N
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQN 218



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 150/360 (41%), Gaps = 42/360 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEMR +G  P+ + Y  L+T ++     
Sbjct: 71  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTMYVEN--- 127

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 128 -KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 187 YNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           +   +P+ IT++ +I  +GK    D+   +F+ L  S  +     + +MI+ Y KA L  
Sbjct: 247 NRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYEKAGLVA 306

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++     +P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 307 HAKRLLHELK----SPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVRDITVFERMI 362

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             +           +F+    +G  PDS+   L+  AY K +  +    +   M++ G V
Sbjct: 363 HLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEMQEVGCV 422


>gi|297852926|ref|XP_002894344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340186|gb|EFH70603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 650

 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 147/332 (44%), Gaps = 29/332 (8%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNAL------------------ITA 55
           Y+ L+ V+ K      A+ +FS M  +GCRP+   Y+ +                  I+ 
Sbjct: 308 YNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLVLNLLVAEGQLVRLDGIVEISK 367

Query: 56  HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY----------NILLRACAQARNVDQV 105
              T+     L + L     +    R   ++ ++          ++L   C   + ++ +
Sbjct: 368 RYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAI 427

Query: 106 NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
             L K +HE  +  D   YN V  A GK   I  +  +  +MK +   PDI T+N+LI S
Sbjct: 428 EMLSK-IHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILISS 486

Query: 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
           +G+    D+   +F+ L  S  KP + ++NS+I   GK     +A   F++M      P 
Sbjct: 487 FGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPD 546

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
            +TY  ++  +G  + V  A  +F+E+   G    + T N +L+    +G   EA  L+ 
Sbjct: 547 VVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKSGRTAEAVDLYT 606

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
                G+TPDS TY +L +  + ++ K  +++
Sbjct: 607 KMKQQGLTPDSITYTVLERLQSGSHGKSRIRR 638



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 93/165 (56%), Gaps = 5/165 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++  + DT +Y+ + + +GK  Q      LF +M+  G  PD   YN LI++      + 
Sbjct: 435 EKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILISSF----GRV 490

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             + +A+  F++++  + CKP+I++YN L+    +  +VD+ +  FKE+ E  L PD+ T
Sbjct: 491 GEVDEAINIFEELERSD-CKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVT 549

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
           Y+ +M+ +GK   ++   S+   M    C+P+I+T+N+L+D   K
Sbjct: 550 YSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEK 594



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 146/330 (44%), Gaps = 12/330 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+R    D   Y+ +I  MG+ G+   A+ LF+EM   G   +   YN L    +    K
Sbjct: 262 KKRHCRRDEYSYTIMIRTMGRIGKYDEAVGLFNEMITEGLTLNVVGYNTL----MQVLAK 317

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K + KA+  F +M     C+PN  TY+++L        + +++ +  E+ +  +   IY
Sbjct: 318 GKMVDKAIQVFSRMVETG-CRPNEYTYSLVLNLLVAEGQLVRLDGIV-EISKRYMTQGIY 375

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY-GKRQAFDKMEQVFKS 181
           +Y  ++    K G + E   +   M S   K +  ++  +++S  G  +  + +E + K 
Sbjct: 376 SY--LVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSK- 432

Query: 182 LMHSKEKPT-LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +H K   T    +N++    GK +       +F+KM     +P   TY  +I+ +G   
Sbjct: 433 -IHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILISSFGRVG 491

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            V  A  IF+EL +      + + N+++     NG   EA + F+     G+ PD  TY 
Sbjct: 492 EVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYS 551

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            L + + K    E+   L + M   G  PN
Sbjct: 552 TLMECFGKTERVEMAYSLFEEMLVKGCQPN 581



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 9/155 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+  G+ G+   A+ +F E+  S C+PD   YN+LI       D  +A  + 
Sbjct: 476 DIFTYNILISSFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVR- 534

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F++M  KG+    P++VTY+ L+    +   V+   +LF+E+      P+I TYN +
Sbjct: 535 ---FKEMQEKGL---NPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNIL 588

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           +D   K+G   E   + ++MK     PD IT+ +L
Sbjct: 589 LDCLEKSGRTAEAVDLYTKMKQQGLTPDSITYTVL 623



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 138/319 (43%), Gaps = 24/319 (7%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           LI   G     ++ + L   ++  G + +   Y  L+ A+L +RD +KA      Y +  
Sbjct: 177 LIGFFGDTEDLQMCLRL---VKKWGLKMNSFTYKCLLQAYLRSRDSSKAFDV---YCEIR 230

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +G    K +I  YN+LL A A+     QV   F+++ +     D Y+Y  ++   G+ G 
Sbjct: 231 RGGH--KLDIFAYNMLLDALAKDEKACQV---FEDMKKRHCRRDEYSYTIMIRTMGRIGK 285

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
             E   + + M +     +++ +N L+    K +  DK  QVF  ++ +  +P   T+ S
Sbjct: 286 YDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTY-S 344

Query: 197 MIINYGKA-----RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
           +++N   A     RL G  E   + MT          Y  ++       +VS A  +F +
Sbjct: 345 LVLNLLVAEGQLVRLDGIVEISKRYMTQG-------IYSYLVRTLSKLGHVSEAHRLFCD 397

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +       +  +  +MLE+ C  G   EA  +    H  GV  D+  Y  ++ A  K   
Sbjct: 398 MWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQ 457

Query: 312 KELVQKLLKRMEQNGIVPN 330
              +  L ++M+++G  P+
Sbjct: 458 ISHIHDLFEKMKKDGPSPD 476


>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Brachypodium distachyon]
          Length = 571

 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 122/259 (47%), Gaps = 7/259 (2%)

Query: 81  RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140
           R +P+  + N LL A   A  VD     FK      ++PD++T+N V+    K G +++ 
Sbjct: 145 RHRPSAFSVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKA 204

Query: 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV---FKSLMHSKEKPTLPTFNSM 197
             V   +++    P ++T+N +ID Y KR    +M  V    K ++ +   P   TFN +
Sbjct: 205 GDVAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVL 264

Query: 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKL 255
           +  Y K      A  VF++M       S +TY  ++  +G C    V    ++ DE+  L
Sbjct: 265 VNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALV--WGLCSEGKVEEGVKLVDEMKDL 322

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
           G    ++TLN++L  +C  G+ T+A+   ++     V P+  TY +L   Y + +  +  
Sbjct: 323 GLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDA 382

Query: 316 QKLLKRMEQNGIVPNKRFF 334
             + + M   G+ PN R +
Sbjct: 383 LAVKEAMSGKGVRPNARIY 401



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 133/312 (42%), Gaps = 11/312 (3%)

Query: 22  GKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER 81
           G+ G+      L  EM  +G  P+   +N L+  +    + A A+      F++MK  + 
Sbjct: 234 GRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVR----VFEEMK-QQG 288

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
              ++VTY+ L+        V++   L  E+ +  L P++ T N V++ + K GM+ + E
Sbjct: 289 IAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAE 348

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF--KSLMHSKE-KPTLPTFNSMI 198
             +  M+    KP+++T+ +L+D Y +    DKM+     K  M  K  +P    +N +I
Sbjct: 349 GWIDSMEQKNVKPNVVTYTILVDGYRR---LDKMKDALAVKEAMSGKGVRPNARIYNCLI 405

Query: 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 258
             + +         +  +M         +TY  +I        V +A ++ DE+  +G +
Sbjct: 406 AGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLE 465

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
               T N ++  YC  G    A  +           +  TY +  K   +    E   +L
Sbjct: 466 PVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKKRANVVTYNVFIKCLCRMGKMEETNEL 525

Query: 319 LKRMEQNGIVPN 330
           L  M + G+VPN
Sbjct: 526 LNEMLEKGLVPN 537



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 139/325 (42%), Gaps = 8/325 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R    D   ++ +I+ + K GQ R A  +  ++R  G  P    YN +I  +   R +A
Sbjct: 178 RRRVSPDLFTFNIVISGLCKTGQLRKAGDVAKDIRAWGLAPSVVTYNTIIDGYCK-RGRA 236

Query: 64  KALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             +       ++M   G+    PN VT+N+L+    +  N      +F+E+ +  +A  +
Sbjct: 237 GRMYHVDALLKEMVEAGIS---PNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAASV 293

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TY+ ++      G ++E   ++  MK     P++ T N +++ + K+      E    S
Sbjct: 294 VTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDS 353

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           +     KP + T+  ++  Y +      A  V + M+     P+   Y C+I  +    +
Sbjct: 354 MEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGD 413

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
                 + DE+   G    + T N ++ A C+ G   +A  L +    +G+ P   TY  
Sbjct: 414 WRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNT 473

Query: 302 LYKAYT-KANMKELVQKLLKRMEQN 325
           +   Y  K N+K    ++  RME+ 
Sbjct: 474 IINGYCEKGNIKS-AYEIRTRMEKG 497



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 121/288 (42%), Gaps = 40/288 (13%)

Query: 81  RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY---GKNGMI 137
           R  P++ T+NI++    +   + +   + K++    LAP + TYN ++D Y   G+ G +
Sbjct: 180 RVSPDLFTFNIVISGLCKTGQLRKAGDVAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRM 239

Query: 138 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-------QAFDKMEQ--------VFKSL 182
             ++++L  M      P+ +TFN+L++ Y K        + F++M+Q         + +L
Sbjct: 240 YHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSAL 299

Query: 183 ---MHSKEK-----------------PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
              + S+ K                 P L T NS++  + K  +   AE     M     
Sbjct: 300 VWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNV 359

Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
            P+ +TY  ++  Y   D +  A  + + +S  G        N ++  +  NG       
Sbjct: 360 KPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSG 419

Query: 283 LFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKRMEQNGIVP 329
           L +     GV  D  TY +L  A   K  +++ V KLL  M   G+ P
Sbjct: 420 LLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAV-KLLDEMLMVGLEP 466



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 126/312 (40%), Gaps = 49/312 (15%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ+   A    YS L+  +  +G+    + L  EM++ G  P+ +  N+++        K
Sbjct: 285 KQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFC----K 340

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              +  A G+   M+  +  KPN+VTY IL+    +   +    A+ + +    + P+  
Sbjct: 341 KGMMTDAEGWIDSME-QKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNAR 399

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            YN ++  + +NG  + +  +L  M+    + DI+T+N+LI +   +    K  ++   +
Sbjct: 400 IYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEM 459

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD-- 240
           +    +P   T+N+ IIN                                    GYC+  
Sbjct: 460 LMVGLEPVHLTYNT-IIN------------------------------------GYCEKG 482

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           N+  A EI   + K  K   V T N  ++  C  G   E + L       G+ P+  TY 
Sbjct: 483 NIKSAYEIRTRMEKGKKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNGVTYD 542

Query: 301 -----LLYKAYT 307
                ++ K YT
Sbjct: 543 TIKEGMMEKGYT 554


>gi|410110149|gb|AFV61154.1| pentatricopeptide repeat-containing protein 123, partial
           [Xeroaloysia ovatifolia]
          Length = 431

 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 136/297 (45%), Gaps = 5/297 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YNA+I        KAK   +
Sbjct: 45  GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFRE 100

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +M+      PN  +Y  LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 101 ARSLISEMR-TAGVMPNTASYTTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMI 159

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +      
Sbjct: 160 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIV 219

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSM++ YGK     KA  + Q+M      P+ ITY  II+++G    + RA  +
Sbjct: 220 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAML 279

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           F +L   G ++       M+ AY   GL   A  L     +    P  +   +L  A
Sbjct: 280 FQKLRSSGVEIDQVLYQTMIVAYEKAGLVAHAKRLLHELKSPDNIPRDTAIHILAGA 336



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 152/327 (46%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 4   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 63

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  
Sbjct: 64  SKAIS----IFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTA 118

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y  ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +
Sbjct: 119 SYTTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 178

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG     
Sbjct: 179 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEH 238

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + GV  D   Y+ +
Sbjct: 239 EKANNLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTM 298

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY KA +    ++LL  ++    +P
Sbjct: 299 IVAYEKAGLVAHAKRLLHELKSPDNIP 325



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 136/292 (46%), Gaps = 5/292 (1%)

Query: 36  EMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95
           EMR     PD   Y+ LIT H     K      AL + QKM+  +R   ++V Y+ L+  
Sbjct: 2   EMRERALSPDRYTYSTLIT-HF---GKEGLFDAALSWLQKME-QDRVPGDLVLYSNLIEL 56

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
             +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  S++S M++    P+
Sbjct: 57  SRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPN 116

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
             ++  L+  Y + + F +   VF  +   K    L T N MI  YG+  +  +A+ +F 
Sbjct: 117 TASYTTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFW 176

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            M  M   P+ ++Y  ++ +YG  +    A  +F  + +      V T N+M+  Y    
Sbjct: 177 GMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTL 236

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
              +A+ L +   N G+ P+S TY  +   + KA   +    L +++  +G+
Sbjct: 237 EHEKANNLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGV 288



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 110/220 (50%)

Query: 111 ELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170
           E+ E  L+PD YTY+ ++  +GK G+     S L +M+ ++   D++ ++ LI+   K  
Sbjct: 2   EMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 61

Query: 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
            + K   +F  L  S   P L  +N+MI  +GKA+L  +A  +  +M      P+  +Y 
Sbjct: 62  DYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYT 121

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
            ++TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF     M
Sbjct: 122 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 181

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           G+ P+  +Y  L + Y  A +      L + M++  IV N
Sbjct: 182 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQN 221



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 150/360 (41%), Gaps = 42/360 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEMR +G  P+ + Y  L+T ++     
Sbjct: 74  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTMYVEN--- 130

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 131 -KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 189

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 190 YNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 249

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           +   +P+ IT++ +I  +GK    D+   +F+ L  S  +     + +MI+ Y KA L  
Sbjct: 250 NRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYEKAGLVA 309

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++     +P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 310 HAKRLLHELK----SPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVRDITVFERMI 365

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             +           +F+    +G  PDS+   L+  AY K +  +    +   M++ G V
Sbjct: 366 HLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEMQEVGCV 425


>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 148/305 (48%), Gaps = 10/305 (3%)

Query: 14  YSKLIAVMGKKG-QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           Y+ +I   GK G + +  + +F EM  +G +PD   YN+L+   + +R      A+ L  
Sbjct: 260 YNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLA--VCSRGGLWEAARNL-- 315

Query: 73  FQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           F +M  +G+++   ++ TYN LL A  +   +D    +  E+    + P++ TY+ + D 
Sbjct: 316 FNEMIDRGIDQ---DVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADG 372

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           Y K G +++  ++ + MK      D +++N L+  Y K   F+   +V K +  S  K  
Sbjct: 373 YAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKD 432

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           + T+N+++  YGK     +   VF++M   +  P+ +TY  +I +Y        A E+F 
Sbjct: 433 VVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFR 492

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E  + G    V   + ++ A C NGL   A LL +     G+ P+  TY  +  A+ ++ 
Sbjct: 493 EFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRST 552

Query: 311 MKELV 315
             E +
Sbjct: 553 TAEFL 557



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 148/316 (46%), Gaps = 6/316 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           + S +I+ +G+ G+  LA  +F    + G       ++ALI+A+     K+    +A+  
Sbjct: 189 LASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAY----GKSGYFDEAIKV 244

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           F+ MK +   KPN+VTYN ++ AC +      +V  +F+E+  + + PD  TYN ++   
Sbjct: 245 FESMK-VSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVC 303

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G+ +   ++ + M       D+ T+N L+D+  K    D   ++   +   K  P +
Sbjct: 304 SRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNV 363

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+++M   Y KA     A  ++ +M  +      ++Y  ++++Y        A ++  E
Sbjct: 364 VTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKE 423

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G    V T NA+L+ Y   G   E   +F+      V P+  TY  L   Y+K ++
Sbjct: 424 MGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSL 483

Query: 312 KELVQKLLKRMEQNGI 327
            E   ++ +  +Q G+
Sbjct: 484 YEEAMEVFREFKQAGL 499



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 143/331 (43%), Gaps = 4/331 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +S LI+  GK G    A+ +F  M+ SG +P+   YNA+I A            + +  F
Sbjct: 225 FSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDA---CGKGGVEFKRVVEIF 281

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M      +P+ +TYN LL  C++    +    LF E+ +  +  D++TYN ++DA  K
Sbjct: 282 EEML-RNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCK 340

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +     ++  M   +  P+++T++ + D Y K    +    ++  +          +
Sbjct: 341 GGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVS 400

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N+++  Y K      A  V ++M +       +TY  ++  YG     +    +F E+ 
Sbjct: 401 YNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMK 460

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           K      + T + +++ Y    L  EA  +F      G+  D   Y  L  A  K  + +
Sbjct: 461 KDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVD 520

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
               LL  M + GI PN   +   ++ F  S
Sbjct: 521 SAVLLLDEMTKEGIRPNVVTYNSIIDAFGRS 551



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 149/322 (46%), Gaps = 39/322 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+++  K G+   A+ +  EM +SG + D   YNAL+  +     K     +    F
Sbjct: 401 YNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGY----GKQGKFNEVTRVF 456

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++MK  +R  PN++TY+ L+   ++    ++   +F+E  ++ L  D+  Y+ +++A  K
Sbjct: 457 KEMK-KDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCK 515

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM-EQVFKSLMHSKEKPT-- 190
           NG++     +L  M     +P+++T+N +ID++G+    + + + V  S     E PT  
Sbjct: 516 NGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAEFLVDGVGASNERQSESPTFM 575

Query: 191 -LPTFNSMIINY-----------------GKARLQ--GKAEY-----VFQKMTAMKYTPS 225
            +   +   IN+                 G A+ +  GK E      VF+KM  ++  P+
Sbjct: 576 LIEGVDESEINWDDGHVFKFYQQLVSEKEGPAKKERLGKEEIRSILSVFKKMHELEIKPN 635

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
            +T+  I+     C ++  A  + +EL +L  +      + +L  +  N +  +A  LF+
Sbjct: 636 VVTFSAILNACSRCKSIEDASMLLEEL-RLFDNQVYGVAHGLLMGFSEN-VWIQAQYLFD 693

Query: 286 NSHNMGVTPDSSTYKLLYKAYT 307
               M    DSST    Y A T
Sbjct: 694 EVKQM----DSSTASAFYNALT 711



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 111/246 (45%), Gaps = 1/246 (0%)

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-IKEMESVL 144
           +  ++ L+ A  ++   D+   +F+ +  S L P++ TYN V+DA GK G+  K +  + 
Sbjct: 222 VFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIF 281

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             M  N  +PD IT+N L+    +   ++    +F  ++       + T+N+++    K 
Sbjct: 282 EEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKG 341

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
                A  +  +M   K  P+ +TY  +   Y     +  A  +++E+  LG  +   + 
Sbjct: 342 GQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSY 401

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N +L  Y   G   +A  + +   + GV  D  TY  L   Y K      V ++ K M++
Sbjct: 402 NTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKK 461

Query: 325 NGIVPN 330
           + + PN
Sbjct: 462 DRVFPN 467



 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 73/170 (42%), Gaps = 25/170 (14%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ    AD  +YS+LI  + K G    A+ L  EM   G RP+   YN++I A       
Sbjct: 495 KQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDA-FGRSTT 553

Query: 63  AKALAKALG----------YFQKMKGMERCKPNIVTYNIL--------------LRACAQ 98
           A+ L   +G           F  ++G++  + N    ++                +    
Sbjct: 554 AEFLVDGVGASNERQSESPTFMLIEGVDESEINWDDGHVFKFYQQLVSEKEGPAKKERLG 613

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
              +  + ++FK++HE  + P++ T++ +++A  +   I++   +L  ++
Sbjct: 614 KEEIRSILSVFKKMHELEIKPNVVTFSAILNACSRCKSIEDASMLLEELR 663


>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 148/305 (48%), Gaps = 10/305 (3%)

Query: 14  YSKLIAVMGKKG-QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           Y+ +I   GK G + +  + +F EM  +G +PD   YN+L+   + +R      A+ L  
Sbjct: 260 YNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLA--VCSRGGLWEAARNL-- 315

Query: 73  FQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           F +M  +G+++   ++ TYN LL A  +   +D    +  E+    + P++ TY+ + D 
Sbjct: 316 FNEMIDRGIDQ---DVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADG 372

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           Y K G +++  ++ + MK      D +++N L+  Y K   F+   +V K +  S  K  
Sbjct: 373 YAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKD 432

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           + T+N+++  YGK     +   VF++M   +  P+ +TY  +I +Y        A E+F 
Sbjct: 433 VVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFR 492

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E  + G    V   + ++ A C NGL   A LL +     G+ P+  TY  +  A+ ++ 
Sbjct: 493 EFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRST 552

Query: 311 MKELV 315
             E +
Sbjct: 553 TAEFL 557



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 148/316 (46%), Gaps = 6/316 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           + S +I+ +G+ G+  LA  +F    + G       ++ALI+A+     K+    +A+  
Sbjct: 189 LASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAY----GKSGYFDEAIKV 244

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           F+ MK +   KPN+VTYN ++ AC +      +V  +F+E+  + + PD  TYN ++   
Sbjct: 245 FESMK-VSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVC 303

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G+ +   ++ + M       D+ T+N L+D+  K    D   ++   +   K  P +
Sbjct: 304 SRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNV 363

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+++M   Y KA     A  ++ +M  +      ++Y  ++++Y        A ++  E
Sbjct: 364 VTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKE 423

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G    V T NA+L+ Y   G   E   +F+      V P+  TY  L   Y+K ++
Sbjct: 424 MGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSL 483

Query: 312 KELVQKLLKRMEQNGI 327
            E   ++ +  +Q G+
Sbjct: 484 YEEAMEVFREFKQAGL 499



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 143/331 (43%), Gaps = 4/331 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +S LI+  GK G    A+ +F  M+ SG +P+   YNA+I A            + +  F
Sbjct: 225 FSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDA---CGKGGVEFKRVVEIF 281

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M      +P+ +TYN LL  C++    +    LF E+ +  +  D++TYN ++DA  K
Sbjct: 282 EEML-RNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCK 340

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +     ++  M   +  P+++T++ + D Y K    +    ++  +          +
Sbjct: 341 GGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVS 400

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N+++  Y K      A  V ++M +       +TY  ++  YG     +    +F E+ 
Sbjct: 401 YNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMK 460

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           K      + T + +++ Y    L  EA  +F      G+  D   Y  L  A  K  + +
Sbjct: 461 KDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVD 520

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
               LL  M + GI PN   +   ++ F  S
Sbjct: 521 SAVLLLDEMTKEGIRPNVVTYNSIIDAFGRS 551



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 151/322 (46%), Gaps = 39/322 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+++  K G+   A+ +  EM +SG + D   YNAL+  +     K     +    F
Sbjct: 401 YNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGY----GKQGKFNEVTRVF 456

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++MK  +R  PN++TY+ L+   ++    ++   +F+E  ++ L  D+  Y+ +++A  K
Sbjct: 457 KEMK-KDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCK 515

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK----------------RQA----FD 173
           NG++     +L  M     +P+++T+N +ID++G+                RQ+    F 
Sbjct: 516 NGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAEFLVDGVGASNERQSESPSFM 575

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIIN-YGKARLQ--GKAEY-----VFQKMTAMKYTPS 225
            +E V +S ++  +      +  ++    G A+ +  GK E      VF+KM  ++  P+
Sbjct: 576 LIEGVDESEINWDDGHVFKFYQQLVSEKEGPAKKERLGKEEIRSILSVFKKMHELEIKPN 635

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
            +T+  I+     C ++  A  + +EL +L  +      + +L  +  N +  +A  LF+
Sbjct: 636 VVTFSAILNACSRCKSIEDASMLLEEL-RLFDNQVYGVAHGLLMGFSEN-VWIQAQYLFD 693

Query: 286 NSHNMGVTPDSSTYKLLYKAYT 307
               M    DSST    Y A T
Sbjct: 694 EVKQM----DSSTASAFYNALT 711



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 111/246 (45%), Gaps = 1/246 (0%)

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-IKEMESVL 144
           +  ++ L+ A  ++   D+   +F+ +  S L P++ TYN V+DA GK G+  K +  + 
Sbjct: 222 VFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIF 281

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             M  N  +PD IT+N L+    +   ++    +F  ++       + T+N+++    K 
Sbjct: 282 EEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKG 341

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
                A  +  +M   K  P+ +TY  +   Y     +  A  +++E+  LG  +   + 
Sbjct: 342 GQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSY 401

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N +L  Y   G   +A  + +   + GV  D  TY  L   Y K      V ++ K M++
Sbjct: 402 NTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKK 461

Query: 325 NGIVPN 330
           + + PN
Sbjct: 462 DRVFPN 467



 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 73/170 (42%), Gaps = 25/170 (14%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ    AD  +YS+LI  + K G    A+ L  EM   G RP+   YN++I A       
Sbjct: 495 KQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDA-FGRSTT 553

Query: 63  AKALAKALGY----------FQKMKGMERCKPNIVTYNIL--------------LRACAQ 98
           A+ L   +G           F  ++G++  + N    ++                +    
Sbjct: 554 AEFLVDGVGASNERQSESPSFMLIEGVDESEINWDDGHVFKFYQQLVSEKEGPAKKERLG 613

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
              +  + ++FK++HE  + P++ T++ +++A  +   I++   +L  ++
Sbjct: 614 KEEIRSILSVFKKMHELEIKPNVVTFSAILNACSRCKSIEDASMLLEELR 663


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 161/356 (45%), Gaps = 8/356 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI    K+G    A  L S M    C+P+   YN L+          KA        
Sbjct: 350 FNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVV 409

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
               G+    P+ VTYNIL+    +   ++    +F  ++ + L PD +T+  ++D   K
Sbjct: 410 DN--GL---LPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCK 464

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +++   +L  M       D +TF  LID + K      +  +F++++ ++   T  T
Sbjct: 465 LGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHT 524

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           FN  +   GK     +A  +  KM      PS +T+  +I  +      + + ++ + + 
Sbjct: 525 FNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMK 584

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G    V T   ++   C NG   EA+ +  +  + GV+P+  TY +L KA+ KA   +
Sbjct: 585 QAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLD 644

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETF--SSSLAGSQSGSAKTDL-TRSLSTAKS 366
              +++  M +NG  PN   +   L  F  S++  G+++ S+  DL  RSLS+ ++
Sbjct: 645 RAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEEN 700



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 155/366 (42%), Gaps = 42/366 (11%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M K+     ++  YS LI  + + G+   A  L  EM   GC+P    Y  LI A    +
Sbjct: 232 MSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKA----K 287

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILL-RACAQARNVDQVNALFKELHESILAP 119
                  KA+    +M   + C PN+ TY IL+ R C + + +++ N +F+++ +  L P
Sbjct: 288 CDIGMTDKAMKMLDEM-ATKACVPNVHTYTILIDRLCREGK-IEEANGVFRKMLKHGLCP 345

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
            I T+N +++ Y K G +     +LS M+   CKP+I T+N L++   +     K   + 
Sbjct: 346 GIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLL 405

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           + ++ +   P   T+N ++  + K      A  +F  M +    P   T+  +I      
Sbjct: 406 RRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKL 465

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN---------SHNM 290
             + +A  I   + K G  +   T  A+++ +C  G   +   LFEN         +H  
Sbjct: 466 GRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTF 525

Query: 291 --------------------------GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
                                     G+ P   T+ +L + + +A    L  K+L+RM+Q
Sbjct: 526 NCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQ 585

Query: 325 NGIVPN 330
            G  PN
Sbjct: 586 AGCSPN 591



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 145/320 (45%), Gaps = 16/320 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  ++  + K G  + A     ++   G   D  V  +L+ A+    D    L +A   F
Sbjct: 174 YRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDD----LGEAFRVF 229

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KM   E C+PN VTY+IL+    +A  +++   L +E+ E    P   TY  ++ A   
Sbjct: 230 EKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCD 289

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            GM  +   +L  M +  C P++ T+ +LID   +    ++   VF+ ++     P + T
Sbjct: 290 IGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIIT 349

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVSRAREIFD 250
           FN++I  Y K   +G     FQ ++ M+     P+  TY  +  M G C  VS++ + F 
Sbjct: 350 FNALINGYCK---EGWVVSAFQLLSVMEKGNCKPNIRTYNEL--MEGLC-RVSKSYKAFL 403

Query: 251 ELSKLGKDMKVS---TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
            L ++  +  +    T N +++ +C  G    A  +F + ++ G+ PD  T+  L     
Sbjct: 404 LLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLC 463

Query: 308 KANMKELVQKLLKRMEQNGI 327
           K    E    +L  M + GI
Sbjct: 464 KLGRLEQANGILGSMVKKGI 483



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/323 (20%), Positives = 138/323 (42%), Gaps = 9/323 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ LI    K G+ +   +LF  M  + C      +N  + A L    K       
Sbjct: 486 DEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDA-LGKDYKLNEANAM 544

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           LG   K   +    P++VT+ IL+    +A        + + + ++  +P++YTY  +++
Sbjct: 545 LGKMMKYGLV----PSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIIN 600

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
               NG ++E E++L  M S    P+  T+ +L+ ++ K    D+  Q+  +++ +  +P
Sbjct: 601 GLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQP 660

Query: 190 TLPTFNSMIINY--GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
               +++++  +      +  +A      + A   +       C+ +      +V  A +
Sbjct: 661 NSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALK 720

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           I DE+ K G   +    N ++   C  G   EAD L ++    G+ PD +   ++ + Y 
Sbjct: 721 IRDEIKKCGVPTE-DLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSII-EHYC 778

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           K    +   + +K +  N  VP+
Sbjct: 779 KTCKYDNCLEFMKLVLDNKFVPS 801



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 122/271 (45%), Gaps = 13/271 (4%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ L+    K+GQ  +A  +F+ M ++G  PD   + ALI        K   L 
Sbjct: 414 LPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLC----KLGRLE 469

Query: 68  KALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           +A G    M  KG+     + VT+  L+    +      V  LF+ + E+      +T+N
Sbjct: 470 QANGILGSMVKKGISL---DEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFN 526

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
             +DA GK+  + E  ++L +M      P ++T  +LI+ + +        ++ + +  +
Sbjct: 527 CFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQA 586

Query: 186 KEKPTLPTFNSMIIN--YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
              P + T+ ++IIN      R++ +AE +   M++   +P+  TY  ++  +     + 
Sbjct: 587 GCSPNVYTY-TIIINGLCNNGRVE-EAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLD 644

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           RA +I   + K G        +A+L  + ++
Sbjct: 645 RAFQIVSTMVKNGCQPNSHIYSALLSGFVLS 675



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 78/184 (42%)

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           K   C+P+ +T+++LI    +    ++  Q+ + ++    +P+  T+  +I       + 
Sbjct: 234 KEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMT 293

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            KA  +  +M      P+  TY  +I        +  A  +F ++ K G    + T NA+
Sbjct: 294 DKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNAL 353

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +  YC  G    A  L          P+  TY  L +   + +       LL+R+  NG+
Sbjct: 354 INGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGL 413

Query: 328 VPNK 331
           +P++
Sbjct: 414 LPDR 417



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 91/222 (40%), Gaps = 11/222 (4%)

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  V++A  KNG ++  E    ++       D      L+ +  +R    +  +VF+ + 
Sbjct: 174 YRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKM- 232

Query: 184 HSKE---KPTLPTFNSMIINYGKARLQGKAEYVFQ---KMTAMKYTPSFITYECIITMYG 237
            SKE   +P   T++ +I    +A   G+ E  FQ   +M      PS  TY  +I    
Sbjct: 233 -SKEENCRPNSVTYSILIHGLCEA---GRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKC 288

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
                 +A ++ DE++       V T   +++  C  G   EA+ +F      G+ P   
Sbjct: 289 DIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGII 348

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
           T+  L   Y K        +LL  ME+    PN R + E +E
Sbjct: 349 TFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELME 390


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 161/356 (45%), Gaps = 8/356 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI    K+G    A  L S M    C+P+   YN L+          KA        
Sbjct: 373 FNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVV 432

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
               G+    P+ VTYNIL+    +   ++    +F  ++ + L PD +T+  ++D   K
Sbjct: 433 DN--GL---LPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCK 487

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +++   +L  M       D +TF  LID + K      +  +F++++ ++   T  T
Sbjct: 488 LGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHT 547

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           FN  +   GK     +A  +  KM      PS +T+  +I  +      + + ++ + + 
Sbjct: 548 FNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMK 607

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G    V T   ++   C NG   EA+ +  +  + GV+P+  TY +L KA+ KA   +
Sbjct: 608 QAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLD 667

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETF--SSSLAGSQSGSAKTDL-TRSLSTAKS 366
              +++  M +NG  PN   +   L  F  S++  G+++ S+  DL  RSLS+ ++
Sbjct: 668 RAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEEN 723



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 155/368 (42%), Gaps = 46/368 (12%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLH 58
           M K+     ++  YS LI  + + G+   A  L  EM   GC+P    Y  LI A   + 
Sbjct: 255 MSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIG 314

Query: 59  TRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL-RACAQARNVDQVNALFKELHESIL 117
             DKA  +   +         + C PN+ TY IL+ R C + + +++ N +F+++ +  L
Sbjct: 315 MTDKAMKMLDEMA-------TKACVPNVHTYTILIDRLCREGK-IEEANGVFRKMLKHGL 366

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
            P I T+N +++ Y K G +     +LS M+   CKP+I T+N L++   +     K   
Sbjct: 367 CPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFL 426

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           + + ++ +   P   T+N ++  + K      A  +F  M +    P   T+  +I    
Sbjct: 427 LLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLC 486

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN---------SH 288
               + +A  I   + K G  +   T  A+++ +C  G   +   LFEN         +H
Sbjct: 487 KLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAH 546

Query: 289 NM--------------------------GVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
                                       G+ P   T+ +L + + +A    L  K+L+RM
Sbjct: 547 TFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERM 606

Query: 323 EQNGIVPN 330
           +Q G  PN
Sbjct: 607 KQAGCSPN 614



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 145/320 (45%), Gaps = 16/320 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  ++  + K G  + A     ++   G   D  V  +L+ A+    D    L +A   F
Sbjct: 197 YRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDD----LGEAFRVF 252

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KM   E C+PN VTY+IL+    +A  +++   L +E+ E    P   TY  ++ A   
Sbjct: 253 EKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCD 312

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            GM  +   +L  M +  C P++ T+ +LID   +    ++   VF+ ++     P + T
Sbjct: 313 IGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIIT 372

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVSRAREIFD 250
           FN++I  Y K   +G     FQ ++ M+     P+  TY  +  M G C  VS++ + F 
Sbjct: 373 FNALINGYCK---EGWVVSAFQLLSVMEKGNCKPNIRTYNEL--MEGLC-RVSKSYKAFL 426

Query: 251 ELSKLGKDMKVS---TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
            L ++  +  +    T N +++ +C  G    A  +F + ++ G+ PD  T+  L     
Sbjct: 427 LLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLC 486

Query: 308 KANMKELVQKLLKRMEQNGI 327
           K    E    +L  M + GI
Sbjct: 487 KLGRLEQANGILGSMVKKGI 506



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 147/349 (42%), Gaps = 35/349 (10%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ L+    K+GQ  +A  +F+ M ++G  PD   + ALI        K   L 
Sbjct: 437 LPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLC----KLGRLE 492

Query: 68  KALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           +A G    M  KG+     + VT+  L+    +      V  LF+ + E+      +T+N
Sbjct: 493 QANGILGSMVKKGISL---DEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFN 549

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
             +DA GK+  + E  ++L +M      P ++T  +LI+ + +        ++ + +  +
Sbjct: 550 CFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQA 609

Query: 186 KEKPTLPTFNSMIIN--YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
              P + T+ ++IIN      R++ +AE +   M++   +P+  TY  ++  +     + 
Sbjct: 610 GCSPNVYTY-TIIINGLCNNGRVE-EAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLD 667

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMN-------GLPTEADLLF------ENSHN- 289
           RA +I   + K G        +A+L  + ++        L +  DL        EN +N 
Sbjct: 668 RAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNC 727

Query: 290 -------MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
                   GV P    Y  L     K        +L + M ++G+ P+K
Sbjct: 728 LSNEIKKCGV-PTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDK 775



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 69/342 (20%), Positives = 134/342 (39%), Gaps = 28/342 (8%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ LI  + K G+   A  +   M   G   D   + ALI  H     KAK +   
Sbjct: 474 DGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKI-GKAKDVCF- 531

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F+ M    RC     T+N  L A  +   +++ NA+  ++ +  L P + T+  +++
Sbjct: 532 --LFENMV-ENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIE 588

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            + + G       +L RMK   C P++ T+ ++I+        ++ E +  S+      P
Sbjct: 589 GHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSP 648

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T+  ++  + KA    +A  +   M      P+   Y  +++ +   +    AR + 
Sbjct: 649 NHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALS 708

Query: 250 ---------------------DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
                                +E+ K G   +    N ++   C  G   EAD L ++  
Sbjct: 709 STGDLDARSLSSEENDNNCLSNEIKKCGVPTE-DLYNFLVVGLCKEGRIIEADQLTQDMV 767

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             G+ PD +   ++ + Y K    +   + +K +  N  VP+
Sbjct: 768 KHGLFPDKAISSII-EHYCKTCKYDNCLEFMKLVLDNKFVPS 808



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 78/184 (42%)

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           K   C+P+ +T+++LI    +    ++  Q+ + ++    +P+  T+  +I       + 
Sbjct: 257 KEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMT 316

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            KA  +  +M      P+  TY  +I        +  A  +F ++ K G    + T NA+
Sbjct: 317 DKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNAL 376

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +  YC  G    A  L          P+  TY  L +   + +       LL+R+  NG+
Sbjct: 377 INGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGL 436

Query: 328 VPNK 331
           +P++
Sbjct: 437 LPDR 440



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 91/222 (40%), Gaps = 11/222 (4%)

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  V++A  KNG ++  E    ++       D      L+ +  +R    +  +VF+ + 
Sbjct: 197 YRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKM- 255

Query: 184 HSKE---KPTLPTFNSMIINYGKARLQGKAEYVFQ---KMTAMKYTPSFITYECIITMYG 237
            SKE   +P   T++ +I    +A   G+ E  FQ   +M      PS  TY  +I    
Sbjct: 256 -SKEENCRPNSVTYSILIHGLCEA---GRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKC 311

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
                 +A ++ DE++       V T   +++  C  G   EA+ +F      G+ P   
Sbjct: 312 DIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGII 371

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
           T+  L   Y K        +LL  ME+    PN R + E +E
Sbjct: 372 TFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELME 413


>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 878

 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 148/337 (43%), Gaps = 39/337 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +S LI+  G+ G    A+ +F  M+++G  P+   YNA+I A            K +  F
Sbjct: 228 FSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDA---CGKGGVEFKKVVEIF 284

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             M      +P+ +T+N LL  C++    +    LF  + +  +  DI+TYN ++DA  K
Sbjct: 285 DGMLS-NGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCK 343

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD-------------------- 173
            G +     ++S M +    P+++T++ +ID Y K    D                    
Sbjct: 344 GGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVS 403

Query: 174 ------------KMEQ---VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
                       + EQ   V K + ++  +  + T+N+++  YGK     +   VF++M 
Sbjct: 404 YNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMK 463

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
             + +P+ +TY  +I +Y        A E+F E  + G    V   +A+++A C NGL  
Sbjct: 464 RGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVE 523

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
            +  L +     G+ P+  TY  +  A+ ++   + V
Sbjct: 524 SSVTLLDEMTKEGIRPNVVTYNSIIDAFGRSASAQCV 560



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 148/327 (45%), Gaps = 50/327 (15%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L++V  K G+   A+ +  EM N+G R D   YNAL+  +     K     +    F
Sbjct: 404 YNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGY----GKQYRYDEVRRVF 459

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++MK   R  PN++TY+ L+   ++     +   +F+E  ++ L  D+  Y+ ++DA  K
Sbjct: 460 EEMK-RGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCK 518

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD-------------------- 173
           NG+++   ++L  M     +P+++T+N +ID++G+  +                      
Sbjct: 519 NGLVESSVTLLDEMTKEGIRPNVVTYNSIIDAFGRSASAQCVVDDSGETTALQVESLSSI 578

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGK--------ARLQGKAEY-----VFQKMTAM 220
            +++  +S    KE       N +I  +GK        A+  GK E      VFQKM  +
Sbjct: 579 VVQEAIESQAADKED------NRIIEIFGKLAAEKACEAKNSGKQEILCILGVFQKMHEL 632

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
           K  P+ +T+  I+     CD+   A  + +EL +L  +      + +L  Y  N +  +A
Sbjct: 633 KIKPNVVTFSAILNACSRCDSFEDASMLLEEL-RLFDNQVYGVAHGLLMGYREN-VWLQA 690

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYT 307
             LF+    M    DSST    Y A T
Sbjct: 691 QSLFDEVKLM----DSSTASAFYNALT 713



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 139/316 (43%), Gaps = 6/316 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           + S +I+ +G+ G+  LA  +F      G       ++ALI+A+     ++    +A+  
Sbjct: 192 LASAMISTLGRLGKVELAKAVFDTALKEGYGKTVYAFSALISAY----GRSGYCNEAIKV 247

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           F  MK      PN+VTYN ++ AC +      +V  +F  +  + + PD  T+N ++   
Sbjct: 248 FDSMKS-NGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVC 306

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G+ +    + S M       DI T+N L+D+  K    D   ++   +      P +
Sbjct: 307 SRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNV 366

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+++MI  Y K      A  +F +M  +      ++Y  ++++Y       +A ++  E
Sbjct: 367 VTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKE 426

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G    V T NA+L  Y       E   +FE      V+P+  TY  L   Y+K  +
Sbjct: 427 MENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGL 486

Query: 312 KELVQKLLKRMEQNGI 327
            +   ++ +  +Q G+
Sbjct: 487 YKEAMEVFREFKQAGL 502



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 159/335 (47%), Gaps = 14/335 (4%)

Query: 14  YSKLIAVMGKKGQTRLAM--WLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           Y+ L+  +G +G +  A+  + F+  R SG      + +A+I+  L    K + LAKA+ 
Sbjct: 156 YTFLLRELGNRGDSAKAVRCFEFAVRRESGKNEQGKLASAMIST-LGRLGKVE-LAKAV- 212

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           +   +K  E     +  ++ L+ A  ++   ++   +F  +  + L P++ TYN V+DA 
Sbjct: 213 FDTALK--EGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDAC 270

Query: 132 GKNGM-IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           GK G+  K++  +   M SN  +PD ITFN L+    +   ++   ++F +++       
Sbjct: 271 GKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQD 330

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAM---KYTPSFITYECIITMYGYCDNVSRARE 247
           + T+N+++    K    G+ +  F+ M+ M      P+ +TY  +I  Y     +  A  
Sbjct: 331 IFTYNTLLDAVCKG---GQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALN 387

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F+E+  LG  +   + N +L  Y   G   +A  + +   N G+  D  TY  L   Y 
Sbjct: 388 MFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYG 447

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           K    + V+++ + M++  + PN   +   ++ +S
Sbjct: 448 KQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYS 482


>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 608

 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 158/360 (43%), Gaps = 45/360 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D+ +Y+ +I    + G  + AM +F +M+++GC+P  S +N LI  + +     + L   
Sbjct: 127 DSILYNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLK-- 184

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           + +   + G    KPN  TYNIL+RA    +N+++   +  ++  S + PD+ TYN +  
Sbjct: 185 MLHLMSLDG--SVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILAR 242

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-- 187
           AY + G     E ++  M+  +  P+  T  ++++ Y K      M +  + +   KE  
Sbjct: 243 AYAQKGETLRAEDLILEMQYEKVAPNERTCGIIVNGYCKE---GNMIEALRFVYRMKELG 299

Query: 188 -KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P L  FNS+I  +         +     M      P  IT+  I+  +     + + +
Sbjct: 300 VHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQ 359

Query: 247 EIFDELSKLGKDMKV--------------------STLNAM---------------LEAY 271
           EIF++++K G +  +                    S L +M               +  +
Sbjct: 360 EIFNDMAKAGIEPDIHAFSILAKGYVRAGETENAESVLTSMAKSGVRPNVVICTTIISGW 419

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           C  G    A +++E    +G++P+  T++ L   Y +A      ++LL+ ME+ G+ P K
Sbjct: 420 CSAGKMENAKMVYEKMCEIGISPNLKTFETLIWGYAEARQPGKAEELLQLMEEKGVFPEK 479



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 148/321 (46%), Gaps = 12/321 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+A + K         L S++  +G +PD  +YNA+I A      ++  + +A+  F
Sbjct: 96  YTTLVAALTKLKHFESIFLLISKVEENGMKPDSILYNAMINAF----SESGNVKEAMKIF 151

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH----ESILAPDIYTYNGVMD 129
           QKMK    CKP   T+N L++    A   ++     K LH    +  + P+  TYN ++ 
Sbjct: 152 QKMKDT-GCKPTTSTFNTLIKGYGNAGKPEEG---LKMLHLMSLDGSVKPNDRTYNILVR 207

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A+     I+E  +VL +M ++  +PD++T+N+L  +Y ++    + E +   + + K  P
Sbjct: 208 AWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGETLRAEDLILEMQYEKVAP 267

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T   ++  Y K     +A     +M  +   P+ + +  +I  +    +     E  
Sbjct: 268 NERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFNSLIKGFLDITDTDGVDEAL 327

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             + + G    V T + ++ A+   GL  +   +F +    G+ PD   + +L K Y +A
Sbjct: 328 TLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDIHAFSILAKGYVRA 387

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              E  + +L  M ++G+ PN
Sbjct: 388 GETENAESVLTSMAKSGVRPN 408



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 116/266 (43%), Gaps = 7/266 (2%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P ++TY  L+ A  + ++ + +  L  ++ E+ + PD   YN +++A+ ++G +KE   
Sbjct: 90  RPTLITYTTLVAALTKLKHFESIFLLISKVEENGMKPDSILYNAMINAFSESGNVKEAMK 149

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL----MHSKEKPTLPTFNSMI 198
           +  +MK   CKP   TFN LI  YG      K E+  K L    +    KP   T+N ++
Sbjct: 150 IFQKMKDTGCKPTTSTFNTLIKGYGNA---GKPEEGLKMLHLMSLDGSVKPNDRTYNILV 206

Query: 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 258
             +   +   +A  V  KM A    P  +TY  +   Y       RA ++  E+      
Sbjct: 207 RAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGETLRAEDLILEMQYEKVA 266

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
               T   ++  YC  G   EA         +GV P+   +  L K +      + V + 
Sbjct: 267 PNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFNSLIKGFLDITDTDGVDEA 326

Query: 319 LKRMEQNGIVPNKRFFLEALETFSSS 344
           L  ME+ G+ P+   F   +  +SS+
Sbjct: 327 LTLMEEYGVKPDVITFSTIMNAWSSA 352



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 124/271 (45%), Gaps = 5/271 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L     +KG+T  A  L  EM+     P+      ++  +     K   + +A
Sbjct: 233 DVVTYNILARAYAQKGETLRAEDLILEMQYEKVAPNERTCGIIVNGYC----KEGNMIEA 288

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L +  +MK +    PN+V +N L++      + D V+     + E  + PD+ T++ +M+
Sbjct: 289 LRFVYRMKEL-GVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEYGVKPDVITFSTIMN 347

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A+   G++ + + + + M     +PDI  F++L   Y +    +  E V  S+  S  +P
Sbjct: 348 AWSSAGLMDKCQEIFNDMAKAGIEPDIHAFSILAKGYVRAGETENAESVLTSMAKSGVRP 407

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +    ++I  +  A     A+ V++KM  +  +P+  T+E +I  Y       +A E+ 
Sbjct: 408 NVVICTTIISGWCSAGKMENAKMVYEKMCEIGISPNLKTFETLIWGYAEARQPGKAEELL 467

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
             + + G   + ST+  + +A+   GL  EA
Sbjct: 468 QLMEEKGVFPEKSTIQLVADAWRNIGLLCEA 498



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 115/247 (46%), Gaps = 17/247 (6%)

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV---LSRMKSNQCKPDIITFN 160
           + N +F  L E    P + TY  ++ A  K   +K  ES+   +S+++ N  KPD I +N
Sbjct: 76  EANLIFDNLVEDGHRPTLITYTTLVAALTK---LKHFESIFLLISKVEENGMKPDSILYN 132

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
            +I+++ +     +  ++F+ +  +  KPT  TFN++I  YG A   GK E   + +  M
Sbjct: 133 AMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNA---GKPEEGLKMLHLM 189

Query: 221 ----KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
                  P+  TY  ++  +    N+  A  +  ++   G    V T N +  AY   G 
Sbjct: 190 SLDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGE 249

Query: 277 PTEA-DLLFENSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKLLKRMEQNGIVPNKRFF 334
              A DL+ E  +   V P+  T  ++   Y K  NM E + + + RM++ G+ PN   F
Sbjct: 250 TLRAEDLILEMQYEK-VAPNERTCGIIVNGYCKEGNMIEAL-RFVYRMKELGVHPNLVIF 307

Query: 335 LEALETF 341
              ++ F
Sbjct: 308 NSLIKGF 314



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 7/216 (3%)

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           +++   +M+     G   E   +   +  +  +P +IT+  L+ +  K + F+ +  +  
Sbjct: 58  VHSRTKLMNILIGKGKPHEANLIFDNLVEDGHRPTLITYTTLVAALTKLKHFESIFLLIS 117

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +  +  KP    +N+MI  + ++    +A  +FQKM      P+  T+  +I  YG   
Sbjct: 118 KVEENGMKPDSILYNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYG--- 174

Query: 241 NVSRAREIFDELSKLGKDMKVS----TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
           N  +  E    L  +  D  V     T N ++ A+C      EA  +       G+ PD 
Sbjct: 175 NAGKPEEGLKMLHLMSLDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDV 234

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
            TY +L +AY +       + L+  M+   + PN+R
Sbjct: 235 VTYNILARAYAQKGETLRAEDLILEMQYEKVAPNER 270



 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 36/70 (51%)

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           G P EA+L+F+N    G  P   TY  L  A TK    E +  L+ ++E+NG+ P+   +
Sbjct: 72  GKPHEANLIFDNLVEDGHRPTLITYTTLVAALTKLKHFESIFLLISKVEENGMKPDSILY 131

Query: 335 LEALETFSSS 344
              +  FS S
Sbjct: 132 NAMINAFSES 141


>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
 gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
 gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
          Length = 583

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 141/319 (44%), Gaps = 5/319 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R Y  D   ++ +I  + + GQ + A+ L   M   GC PD   +N L+     T + 
Sbjct: 243 QDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNE- 301

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              +++     ++++    C PN+VT+  ++    +A  ++   A++ ++  S + P+  
Sbjct: 302 ---VSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTV 358

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN +++ YGK G +     V  +M   +C PD++TF+ LID Y +    D   +++  +
Sbjct: 359 TYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDM 418

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM-KYTPSFITYECIITMYGYCDN 241
              + +P + TF+ +I +  K     +A  +  ++       P    Y  +I +   C  
Sbjct: 419 AQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGK 478

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           V  A  I   + + G      T   ++  YCM    +EA + F      G +PDS T   
Sbjct: 479 VDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNC 538

Query: 302 LYKAYTKANMKELVQKLLK 320
                 KA M   V  +++
Sbjct: 539 FISCLLKAGMPNEVDHVMR 557



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 142/312 (45%), Gaps = 12/312 (3%)

Query: 16  KLIAVMGKKGQTRLAMWLFSEMRNS-GCRPDPSVYNALITAHL--HTRDKAKALAKALGY 72
           ++I V+ + G+   A+ LF +M    G  PD    + L+++    +  D +  L      
Sbjct: 149 QIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASE 208

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE-LHESILAPDIYTYNGVMDAY 131
           F        C+     YN L+ +      V  V ALF+  + + + +PD++++N V+   
Sbjct: 209 FG-------CRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGV 261

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPT 190
            + G +++   ++ RM    C PD +T N+L+D   +     +  +V + L       P 
Sbjct: 262 CRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPN 321

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           + TF S+I  Y KA     A  V+  M A    P+ +TY  +I  YG   ++  A E++ 
Sbjct: 322 VVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQ 381

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           ++++L     V T +++++ YC  G   +A  ++ +     + P+  T+ ++  +  K N
Sbjct: 382 QMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQN 441

Query: 311 MKELVQKLLKRM 322
             +    LL  +
Sbjct: 442 RSDEAIGLLNEL 453


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 143/317 (45%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I ++ K G+   A  +  EM + G  PD  +Y  LI        K   ++ A   F
Sbjct: 326 YNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFC----KLGNVSSAYRLF 381

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+   +  P+ +TY  ++    Q   V + + LF E+    L PD  TY  ++D Y K
Sbjct: 382 DEMQK-RKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCK 440

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +KE  S+ ++M      P+I+T+  L D   K    D   ++   +     +  + T
Sbjct: 441 EGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYT 500

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS++    KA    +A  + + M    + P  +TY  ++  Y     + RA E+  ++ 
Sbjct: 501 YNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQML 560

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
                  V T N ++  +CM+G+  + + L +     G+ P+++TY  L K Y   N   
Sbjct: 561 DRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMR 620

Query: 314 LVQKLLKRMEQNGIVPN 330
              ++ + M   G+VP+
Sbjct: 621 ATTEIYRGMCAKGVVPD 637



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 147/323 (45%), Gaps = 9/323 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           +T  Y+ +   + + G+   A  L  +M   GC PD   Y+ +I  +    +    L + 
Sbjct: 252 NTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGE----LQRV 307

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L   ++M+ ++  KPN  TYN ++    +   V +   + +E+    +APD   Y  ++D
Sbjct: 308 LKLIEEMQ-IKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLID 366

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            + K G +     +   M+  +  PD IT+  +I    +     + +++F  ++  + +P
Sbjct: 367 GFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEP 426

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T+ ++I  Y K     +A  +  +M  M  TP+ +TY  +      C  V  A E+ 
Sbjct: 427 DEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELL 486

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+ + G ++ + T N+++   C  G   +A  L ++    G  PD+ TY  L  AY K+
Sbjct: 487 HEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKS 546

Query: 310 ----NMKELVQKLLKRMEQNGIV 328
                  EL++++L R  Q  +V
Sbjct: 547 REMVRAHELLRQMLDRELQPTVV 569



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 148/334 (44%), Gaps = 6/334 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQK++    D   Y+ +I  + + G+   A  LF EM      PD   Y ALI  +    
Sbjct: 384 MQKRK-ISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYC--- 439

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K   + +A     +M  M    PNIVTY  L     +   VD  N L  E+    L  +
Sbjct: 440 -KEGKMKEAFSLHNQMLQMG-LTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELN 497

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           IYTYN +++   K G I +   ++  M+     PD +T+  L+D+Y K +   +  ++ +
Sbjct: 498 IYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLR 557

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++  + +PT+ TFN ++  +  + +    E + + M      P+  TY  +I  Y   +
Sbjct: 558 QMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRN 617

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           N+    EI+  +   G     +T N +++ +C      EA  L  +    G     S+Y 
Sbjct: 618 NMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYN 677

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            L K + K       ++L ++M + G+V ++  +
Sbjct: 678 ALIKGFYKRKKFLEARELFEQMRREGLVADREIY 711



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 131/295 (44%), Gaps = 9/295 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI    K+G+ + A  L ++M   G  P+   Y AL         K   +  A
Sbjct: 427 DEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLC----KCGEVDTA 482

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
                +M  KG+E    NI TYN L+    +A N+DQ   L K++  +   PD  TY  +
Sbjct: 483 NELLHEMCRKGLEL---NIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTL 539

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           MDAY K+  +     +L +M   + +P ++TFN+L++ +      +  E++ K ++    
Sbjct: 540 MDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGI 599

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P   T+NS+I  Y           +++ M A    P   TY  +I  +    N+  A  
Sbjct: 600 MPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWF 659

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           +  ++   G ++ VS+ NA+++ +       EA  LFE     G+  D   Y + 
Sbjct: 660 LHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIF 714



 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 40/91 (43%)

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           D +  A ++F E  ++G     ++ N +  + C  G   EA  L       G  PD  +Y
Sbjct: 232 DGIKIALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISY 291

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +   Y +    + V KL++ M+  G+ PN
Sbjct: 292 STVINGYCQVGELQRVLKLIEEMQIKGLKPN 322


>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 155/319 (48%), Gaps = 11/319 (3%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           + +I+  G++G    A   F +++ +G +P  + YN++    L    KA    +AL   +
Sbjct: 312 TTVISACGREGILDEARRFFDDLKLNGYKPGTATYNSM----LQVFGKAGVYTEALNILK 367

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M+    C+P+ +TYN L+ A  +A   D+  A+   +    + P+  TY  V++AYGK 
Sbjct: 368 EMED-NNCEPDAITYNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKA 426

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G   +   V  +MK   C P++ T+N ++   GKR   + M ++   +  +   P   T+
Sbjct: 427 GDADKALEVFGQMKELGCVPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITW 486

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVSRAREIFDE 251
           N+M+   G+   +GK ++V Q +  MK   + P   T+  +I+ YG C +     +++ E
Sbjct: 487 NTMLAVCGE---KGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGE 543

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G    ++T NA+L A    G    A+ +  +    G  P+ ++Y LL   Y+KA  
Sbjct: 544 MVAAGFTPCITTYNALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGN 603

Query: 312 KELVQKLLKRMEQNGIVPN 330
              ++K+   +    + P+
Sbjct: 604 VRGLEKVEMEIYDGHVFPS 622



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 163/348 (46%), Gaps = 13/348 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+   + +   Y+ ++ ++GK+ ++   + +  +M+ +GC PD   +N ++ A    + K
Sbjct: 440 KELGCVPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTML-AVCGEKGK 498

Query: 63  AKALAKALGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K +++ L      + M+ C  +P+  T+N L+ A  +  +   V  ++ E+  +   P 
Sbjct: 499 QKFVSQVL------REMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPC 552

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           I TYN +++A  + G  K  ESV+  M+    KP+  +++LL+  Y K      +E+V  
Sbjct: 553 ITTYNALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKVEM 612

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +      P+     ++++   K R     E  F ++    Y    +    +++M+    
Sbjct: 613 EIYDGHVFPSWMLLRTLVLTNYKCRQLKGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQ 672

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            + +A E+ D +   G    + T N++++ Y   G   +A+ + ++  N G++PD  +Y 
Sbjct: 673 KLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYN 732

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 348
            + K + K  + +   ++L  M  NG+ P    F     TF S  AG+
Sbjct: 733 TVIKGFCKKGLVQEAIRILSEMTANGVQPCPITF----NTFMSCYAGN 776



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 145/332 (43%), Gaps = 22/332 (6%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D    + ++    + G+ + A+ +F +M+ +G  P    YN ++  +       +A 
Sbjct: 233 YSLDVKACTTVLHAYARTGKYKRAIEIFEKMKETGLDPTLVTYNVMLDVY---GKMGRAW 289

Query: 67  AKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           +  L    +M  KG+E    +  T   ++ AC +   +D+    F +L  +   P   TY
Sbjct: 290 SMILELLDEMRSKGLEF---DEFTCTTVISACGREGILDEARRFFDDLKLNGYKPGTATY 346

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++  +GK G+  E  ++L  M+ N C+PD IT+N L+ +Y +    D+   V  ++  
Sbjct: 347 NSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVAAYVRAGFHDEGAAVIDTMAS 406

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P   T+ ++I  YGKA    KA  VF +M  +   P+  TY  ++ + G      R
Sbjct: 407 KGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELGCVPNVCTYNNVLVLLG-----KR 461

Query: 245 AREIFDELSKLGKDMKVS-------TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
           +R   +++ K+  DMK++       T N ML      G       +     N G  PD  
Sbjct: 462 SRS--EDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKE 519

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           T+  L  AY +   +  V K+   M   G  P
Sbjct: 520 TFNTLISAYGRCGSEVDVAKMYGEMVAAGFTP 551



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 142/322 (44%), Gaps = 5/322 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ ++AV G+KG+ +    +  EM+N G  PD   +N LI+A+     +   +AK 
Sbjct: 482 DRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGRCGSEVD-VAKM 540

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            G      G   C   I TYN LL A A+  N     ++  ++ +    P+  +Y+ ++ 
Sbjct: 541 YGEMVA-AGFTPC---ITTYNALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLH 596

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y K G ++ +E V   +      P  +    L+ +  K +    ME+ F  L ++  K 
Sbjct: 597 CYSKAGNVRGLEKVEMEIYDGHVFPSWMLLRTLVLTNYKCRQLKGMERAFHQLQNNGYKL 656

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +   NSM+  + + +   KA  +   +      P+ +TY  +I +Y    +  +A E+ 
Sbjct: 657 DMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEML 716

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            ++   G    V + N +++ +C  GL  EA  +       GV P   T+      Y   
Sbjct: 717 KDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPITFNTFMSCYAGN 776

Query: 310 NMKELVQKLLKRMEQNGIVPNK 331
            +     ++++ M ++G +PN+
Sbjct: 777 GLFAEADEVIRYMIEHGCMPNE 798



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 110/244 (45%), Gaps = 7/244 (2%)

Query: 92  LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG----MIKEMESVLSRM 147
           +L A A+     +   +F+++ E+ L P + TYN ++D YGK G    MI E+   L  M
Sbjct: 243 VLHAYARTGKYKRAIEIFEKMKETGLDPTLVTYNVMLDVYGKMGRAWSMILEL---LDEM 299

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           +S   + D  T   +I + G+    D+  + F  L  +  KP   T+NSM+  +GKA + 
Sbjct: 300 RSKGLEFDEFTCTTVISACGREGILDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVY 359

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            +A  + ++M      P  ITY  ++  Y           + D ++  G      T   +
Sbjct: 360 TEALNILKEMEDNNCEPDAITYNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTV 419

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           + AY   G   +A  +F     +G  P+  TY  +     K +  E + K+L  M+ NG 
Sbjct: 420 INAYGKAGDADKALEVFGQMKELGCVPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGC 479

Query: 328 VPNK 331
            P++
Sbjct: 480 PPDR 483



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 94/212 (44%), Gaps = 1/212 (0%)

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-QAFDKMEQV 178
           D+     V+ AY + G  K    +  +MK     P ++T+N+++D YGK  +A+  + ++
Sbjct: 236 DVKACTTVLHAYARTGKYKRAIEIFEKMKETGLDPTLVTYNVMLDVYGKMGRAWSMILEL 295

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
              +     +    T  ++I   G+  +  +A   F  +    Y P   TY  ++ ++G 
Sbjct: 296 LDEMRSKGLEFDEFTCTTVISACGREGILDEARRFFDDLKLNGYKPGTATYNSMLQVFGK 355

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
               + A  I  E+     +    T N ++ AY   G   E   + +   + GV P++ T
Sbjct: 356 AGVYTEALNILKEMEDNNCEPDAITYNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAIT 415

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y  +  AY KA   +   ++  +M++ G VPN
Sbjct: 416 YTTVINAYGKAGDADKALEVFGQMKELGCVPN 447


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 155/374 (41%), Gaps = 52/374 (13%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR  I D   YS LI  +  + +   A WLF  M+  GCRPD   Y  L+     T +  
Sbjct: 375 QRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGN-- 432

Query: 64  KALAKALGYFQKMK------GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
             +  AL   Q+M       G+ +CKP +++Y+I++    + R  D+   LF+E+    +
Sbjct: 433 --INIALQLHQEMLNDTGRYGI-KCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGI 489

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
            PD+ +Y  ++  +  +G  ++ + + + M     +PD+ T ++LID   K+    +  +
Sbjct: 490 MPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANK 549

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT--------- 228
           + + ++       + T  +++          KA  +F KM  +   P+ +T         
Sbjct: 550 LLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLC 609

Query: 229 --------------------------------YECIITMYGYCDNVSRAREIFDELSKLG 256
                                           Y  II     C     ARE+F E+  LG
Sbjct: 610 QSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALG 669

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
               V +  +++  +C +G   +A  LF    ++GV PD +T+ +L     K        
Sbjct: 670 VIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEAN 729

Query: 317 KLLKRMEQNGIVPN 330
           +LL+ M Q G +PN
Sbjct: 730 ELLEVMIQRGCIPN 743



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 148/342 (43%), Gaps = 22/342 (6%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR  I D   YS LI  +  + +   A WLF  M+  GCRPD   Y  L+     T +  
Sbjct: 82  QRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGN-- 139

Query: 64  KALAKALGYFQKMK------GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
             +  AL   Q+M       G+ +CKP +++Y+I++    + R  D+   LFKE+    +
Sbjct: 140 --INIALQLHQEMLNDTGRYGI-KCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGM 196

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
            PD+ +Y  ++  +  +G  ++ + + + M     +PD+ T  +LID + K     +  +
Sbjct: 197 MPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANE 256

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           + + ++H      + T++++I          +A  +F  M  +   P  I Y  +  M G
Sbjct: 257 LLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTL--MKG 314

Query: 238 YCDN------VSRAREIFDELSKLGKDM---KVSTLNAMLEAYCMNGLPTEADLLFENSH 288
            C        +   +E+ ++ S+ G       V+T + +++  C  G   EA+ L E   
Sbjct: 315 LCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMI 374

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             G   D  TY  L K     +       L   M++ G  P+
Sbjct: 375 QRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPD 416



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 146/337 (43%), Gaps = 13/337 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR  I D    + L+  +  K +   A  LF +M+  GC P+      L+     + +  
Sbjct: 556 QRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIK 615

Query: 64  KALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            AL             G+  CKPN ++Y+I++    +    D+   LFKE+    + PD+
Sbjct: 616 IALELHKNMLSDTSPYGI-NCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDV 674

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            +Y  ++  + ++G  K+ + + + M     +PD+ TF++LID   K     +  ++ + 
Sbjct: 675 ISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEV 734

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD- 240
           ++     P   T+ +++          +A  +F KM  +   P  +TY  +  M G C  
Sbjct: 735 MIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTL--MKGLCQT 792

Query: 241 -NVSRAREI----FDELSKLGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
            N+  A E+      +  + G + K  V + + +++  C +G   EA  LF+    +GV 
Sbjct: 793 GNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVI 852

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           P+  +Y  L   + ++   E  + L   M   G+  N
Sbjct: 853 PNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLN 889



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 145/334 (43%), Gaps = 15/334 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K +  + D   Y+ LI      G+   A  LF+EM + G +PD +  + LI   L  + K
Sbjct: 485 KAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDM-LCKKGK 543

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
                K L    +      C  ++VT   L++       + +   LF ++ +    P++ 
Sbjct: 544 VIEANKLLEVVIQ----RGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVV 599

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSN------QCKPDIITFNLLIDSYGKRQAFDKME 176
           T   +M    ++G IK    +   M S+       CKP+ I+++++ID   K    D+  
Sbjct: 600 TCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEAR 659

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           ++FK +      P + ++ S+I  + ++     A+Y+F +M  +   P   T+  +I M 
Sbjct: 660 ELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDML 719

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                V  A E+ + + + G      T   +++  CMN   +EA  LF     +G  PD 
Sbjct: 720 CKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDV 779

Query: 297 STYKLLYKAYTK-ANMK---ELVQKLLKRMEQNG 326
            TY  L K   +  N+K   EL +K+L    Q G
Sbjct: 780 VTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYG 813



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 157/353 (44%), Gaps = 29/353 (8%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D    S LI ++ KKG+   A  L   +   GC  D      L+   L  + +   ++KA
Sbjct: 527 DVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKG-LCMKHR---ISKA 582

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA----------P 119
              F KM+ +  C PN+VT   L++   Q+ N+     +  ELH+++L+          P
Sbjct: 583 TQLFLKMQKL-GCMPNVVTCATLMKGLCQSGNI----KIALELHKNMLSDTSPYGINCKP 637

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           +  +Y+ ++D   K G   E   +   MK+    PD+I++  LI  + +   +   + +F
Sbjct: 638 NAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLF 697

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             ++    +P + TF+ +I    K     +A  + + M      P+ +TY  ++   G C
Sbjct: 698 NEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVK--GLC 755

Query: 240 --DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTEADL---LFENSHNMGVT 293
             D +S A ++F ++ KLG    V T   +++  C  G + T  +L   +  ++   G  
Sbjct: 756 MNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTN 815

Query: 294 --PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             PD  +Y ++     K   ++  ++L K M+  G++PN   +   +  F  S
Sbjct: 816 FKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRS 868



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 137/311 (44%), Gaps = 24/311 (7%)

Query: 37  MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI----- 91
           MR +G  PD   +N LI    + +   + LA   G  ++        P+IVTY+I     
Sbjct: 1   MRLAGLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGY-----IPDIVTYSIRPDVT 55

Query: 92  ----LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
               L+    +   V + N L + + +     DI TY+ ++        I E   +   M
Sbjct: 56  TSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSM 115

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS------KEKPTLPTFNSMIINY 201
           +   C+PD IT+  L+    +    +   Q+ + +++       K KPTL +++ +I   
Sbjct: 116 QKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGL 175

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDM 259
            K R + +A  +F++M A    P  I+Y  +I  +G+C +    +A+ +F+E+  +G   
Sbjct: 176 CKDRREDEARELFKEMKAQGMMPDVISYTSLI--HGFCHSGKWEKAKCLFNEMLDVGIQP 233

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            V+T   +++ +C  G   EA+ L E   + G   D  TY  L K     +      +L 
Sbjct: 234 DVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLF 293

Query: 320 KRMEQNGIVPN 330
             M++ G  P+
Sbjct: 294 MSMKKLGCRPD 304



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 146/372 (39%), Gaps = 49/372 (13%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K +  + D   Y+ LI      G+   A  LF+EM + G +PD +    LI         
Sbjct: 192 KAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKV 251

Query: 63  AKA-------------------------------LAKALGYFQKMKGMERCKPNIVTYNI 91
            +A                               +++A   F  MK +  C+P+ + Y  
Sbjct: 252 IEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKL-GCRPDAIAYGT 310

Query: 92  LLRACAQARNVDQVNALFKELHES-------ILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           L++   Q   ++    L +E+           + PD+ T + ++D   K G + E   +L
Sbjct: 311 LMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELL 370

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             M    C  DI+T++ LI          +   +F S+     +P   T+ +++    + 
Sbjct: 371 EVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQT 430

Query: 205 RLQGKAEYVFQKMT------AMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLG 256
                A  + Q+M        +K  P+ I+Y  II   G C +     ARE+F+E+   G
Sbjct: 431 GNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIID--GLCKDRREDEARELFEEMKAQG 488

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
               V +   ++  +C++G   +A  LF    ++G+ PD +T  +L     K        
Sbjct: 489 IMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEAN 548

Query: 317 KLLKRMEQNGIV 328
           KLL+ + Q G +
Sbjct: 549 KLLEVVIQRGCI 560



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 120/276 (43%), Gaps = 50/276 (18%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I D   Y+ LI    + G+ + A +LF+EM + G +PD + ++ LI   +  ++     A
Sbjct: 671 IPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLI--DMLCKEGKVIEA 728

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
             L      +G   C PN VTY  L++       + +   LF ++ +    PD+ TY  +
Sbjct: 729 NELLEVMIQRG---CIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTL 785

Query: 128 MDAYGKNGMIKEMESVLSRMKSN------QCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           M    + G IK    +  +M S+        KPD+I+++++ID   K             
Sbjct: 786 MKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCK------------- 832

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
             H +E                     +A  +F++M A+   P+ I+Y  +I  +G+C +
Sbjct: 833 --HGRED--------------------EARELFKEMKALGVIPNVISYTSLI--HGFCRS 868

Query: 242 --VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
             +  A+ +F+E+   G  +   T + M+  +C  G
Sbjct: 869 GKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEG 904



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 84/176 (47%), Gaps = 9/176 (5%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR  I +T  Y+ L+  +    +   A  LF +M+  GC PD   Y  L+     T +  
Sbjct: 737 QRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGN-- 794

Query: 64  KALAKALGYFQKM-----KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
             +  AL   +KM     +     KP++++Y+I++    +    D+   LFKE+    + 
Sbjct: 795 --IKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVI 852

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
           P++ +Y  ++  + ++G +++ + + + M     + + +T++++I  + K    DK
Sbjct: 853 PNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDK 908


>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
          Length = 581

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 141/319 (44%), Gaps = 5/319 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R Y  D   ++ +I  + + GQ + A+ L   M   GC PD   +N ++     T + 
Sbjct: 241 QDRLYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNE- 299

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              +++     ++++    C PN+VT+  ++    +A  ++   A++ ++  S + P+  
Sbjct: 300 ---VSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTV 356

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN +++ YGK G +     V  +M   +C PD++TF+ LID Y +    D   +++  +
Sbjct: 357 TYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDM 416

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSFITYECIITMYGYCDN 241
              + +P + TF+ +I +  K     +A  +  ++       P    Y  +I +   C  
Sbjct: 417 AQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFIYNPVIDVLCKCGK 476

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           V  A  I   + + G      T   ++  YCM    +EA + F      G +PDS T   
Sbjct: 477 VDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNC 536

Query: 302 LYKAYTKANMKELVQKLLK 320
                 KA M   V  +++
Sbjct: 537 FISCLLKAGMPNEVDHVMR 555



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 143/312 (45%), Gaps = 12/312 (3%)

Query: 16  KLIAVMGKKGQTRLAMWLFSEMRNS-GCRPDPSVYNALITAHL--HTRDKAKALAKALGY 72
           ++I V+ + G+   A+ LF +M    G  PD    + L+++    +  D +  L      
Sbjct: 147 QIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASE 206

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE-LHESILAPDIYTYNGVMDAY 131
           F        C+     YN L+ +      V  V ALF+  + + + +PD++++N V+   
Sbjct: 207 FG-------CRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFNVVIKGV 259

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPT 190
            + G +++   ++ RM    C PD +T N+++D   +     +  +V + L       P 
Sbjct: 260 CRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPN 319

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           + TF S+I  Y KA     A  V+  M A    P+ +TY  +I  YG   ++  A E++ 
Sbjct: 320 VVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQ 379

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           ++++L     V T +++++ YC  G   +A  ++ +     + P+  T+ ++  +  K N
Sbjct: 380 QMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQN 439

Query: 311 MKELVQKLLKRM 322
             +   +LL  +
Sbjct: 440 RSDEAIRLLNEL 451


>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
          Length = 1091

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 147/317 (46%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L+   GKK      +WL +EM   G +P+   Y    T  +    +A    +A    
Sbjct: 209 YSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSY----TICIRVLGQAARFDEAYHIL 264

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM+    CKP++VT+ ++++    A  +    A+F ++  S   PD  TY  ++D  G 
Sbjct: 265 GKMED-SGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGD 323

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G  + +  V + M ++    +I+++  ++D+  +    D+   VF  +      P   +
Sbjct: 324 SGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYS 383

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS+I  + KA +  +A  +F  M A   +P+  T+   I  YG      +A + ++ + 
Sbjct: 384 YNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMK 443

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V+  NA+L +   +G    A  +F     MGV+PD+ TY ++ K  +KA+  +
Sbjct: 444 SKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMMIKCCSKASKAD 503

Query: 314 LVQKLLKRMEQNGIVPN 330
                   M ++G VP+
Sbjct: 504 EAMNFFSDMVESGCVPD 520



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 155/348 (44%), Gaps = 10/348 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQKQ     + G ++ +   +G +G  R A      MR +G   +   YN LI    +  
Sbjct: 127 MQKQ-VVKTNVGTFATIFGGVGVEGGLRSAPVALPVMREAGMSLNAYTYNGLI----YFL 181

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K+   A+A+  ++ M   +   P++ TY++L+ A  + R+VD V  L  E+    + P+
Sbjct: 182 VKSGFDAEAMEVYKAMV-EDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPN 240

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           +Y+Y   +   G+     E   +L +M+ + CKPD++T  ++I            + VF 
Sbjct: 241 VYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFW 300

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +  S +KP   T+ +++   G +        V+  M A  Y  + ++Y  ++       
Sbjct: 301 KMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVG 360

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            V  A  +FDE+ + G   +  + N+++  +    +   A  LF + +  G +P+  T+ 
Sbjct: 361 RVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHV 420

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 348
           L    Y K+       +  + M+  GIVP+    + A      SLAGS
Sbjct: 421 LFINYYGKSGQSLKAIQRYEHMKSKGIVPD----VAAANAVLYSLAGS 464



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 151/366 (41%), Gaps = 44/366 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+  I V+G+  +   A  +  +M +SGC+PD   +  +I         A  L+ A   F
Sbjct: 244 YTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVII----QVLCDAGRLSDAKAVF 299

Query: 74  QKMKG-------------MERC---------------------KPNIVTYNILLRACAQA 99
            KMK              +++C                       NIV+Y  ++ A  Q 
Sbjct: 300 WKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQV 359

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
             VD+  A+F E+ E  ++P+ Y+YN ++  + K  M      + + M +    P+  T 
Sbjct: 360 GRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTH 419

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
            L I+ YGK     K  Q ++ +      P +   N+++ +   +   G A+ VF ++ A
Sbjct: 420 VLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKA 479

Query: 220 MKYTPSFITYECIITMYGYCDNVSRARE---IFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M  +P  ITY  +I     C   S+A E    F ++ + G    V  LN++++     G 
Sbjct: 480 MGVSPDTITYTMMIKC---CSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGK 536

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
             EA  LF     M + P + TY  L     +    + V +LL+ M +    PN   +  
Sbjct: 537 GNEAWQLFHKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNT 596

Query: 337 ALETFS 342
            L+  S
Sbjct: 597 VLDCLS 602



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 116/269 (43%), Gaps = 1/269 (0%)

Query: 62   KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            K K   +A   F K KG+        +YN L+R       +D    LF E+      PD 
Sbjct: 743  KHKKALEAHQLFNKFKGL-GVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDE 801

Query: 122  YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            +TYN ++DA GK+  ++EM  V   M     +   +T+N +I    K +  ++   ++ +
Sbjct: 802  FTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYN 861

Query: 182  LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
            LM     PT  T+  ++    K+     AE +F +M      P+   Y  ++  +    N
Sbjct: 862  LMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGN 921

Query: 242  VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
                 ++F+++ + G +  + +   +++  C  G   +    F   H +G+ PD   Y L
Sbjct: 922  TENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNL 981

Query: 302  LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            L     K+   E    L   M++ GI+PN
Sbjct: 982  LIDGLGKSERIEEAVSLFNEMKKKGIIPN 1010



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 145/328 (44%), Gaps = 9/328 (2%)

Query: 11   TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
            TG Y+ LI  +  +    +A  LF+EM+  GC PD   YN ++ A      K+  + + L
Sbjct: 766  TGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDA----MGKSMRVEEML 821

Query: 71   GYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
               ++M  KG E      VTYN ++    +++ ++Q   L+  L     +P   TY  ++
Sbjct: 822  KVQKEMHRKGYES---TYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLL 878

Query: 129  DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            D   K+G + + E++ + M    C+P+   +N+L++ +      + + Q+F+ ++     
Sbjct: 879  DGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGIN 938

Query: 189  PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
            P + ++  +I     A         F+++  +   P  I Y  +I   G  + +  A  +
Sbjct: 939  PDIKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSL 998

Query: 249  FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            F+E+ K G    + T N+++      G   EA  ++E     G  P   TY  L + Y+ 
Sbjct: 999  FNEMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEELLRKGWKPSVFTYNALIRGYSV 1058

Query: 309  ANMKELVQKLLKRMEQNGIVPNKRFFLE 336
            +   +       +M   G  PN   +++
Sbjct: 1059 SGSTDNAYAAYGQMIVGGCQPNSSTYMQ 1086



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 155/364 (42%), Gaps = 46/364 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ ++  + + G+   A+ +F EM+  G  P+   YN+LI+  L    KA    +AL  F
Sbjct: 349 YTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFL----KADMFDRALELF 404

Query: 74  --------------------------QKMKGMERCK--------PNIVTYNILLRACAQA 99
                                     Q +K ++R +        P++   N +L + A +
Sbjct: 405 NHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGS 464

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
             +     +F EL    ++PD  TY  ++    K     E  +  S M  + C PD++  
Sbjct: 465 GRLGMAKRVFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLAL 524

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ---K 216
           N LID+  K    ++  Q+F  L   K +PT  T+N+++   G+   +GK + V Q   +
Sbjct: 525 NSLIDTLYKGGKGNEAWQLFHKLKEMKIEPTNGTYNTLLSGLGR---EGKVKEVMQLLEE 581

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           MT   Y P+ ITY  ++        V+ A ++   +++ G    +S+ N ++        
Sbjct: 582 MTRTIYPPNLITYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEER 641

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN-MKELVQKLLKRMEQNGIVPNKRFFL 335
             EA  +F     + + PD +T   +  ++ K   MKE +  + + + + G   +K  F 
Sbjct: 642 LEEAFRMFCQMKKI-LAPDYATLCTILPSFVKNGLMKEALHTVKEYILKAGCNVDKSSFH 700

Query: 336 EALE 339
             +E
Sbjct: 701 SLME 704



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 70/353 (19%), Positives = 137/353 (38%), Gaps = 59/353 (16%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSE-MRNSGCRPDPSVYNALITAHLHTR 60
           Q ++    D      ++    K G  + A+    E +  +GC  D S +++L+   L   
Sbjct: 651 QMKKILAPDYATLCTILPSFVKNGLMKEALHTVKEYILKAGCNVDKSSFHSLMEGIL--- 707

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILL---------RACAQARNVDQVNALFKE 111
            K   + K++ + +          NI +  ILL         R   + +   + + LF +
Sbjct: 708 -KKAGVEKSIEFAE----------NIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNK 756

Query: 112 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171
                ++    +YN ++       +I   E + + MK   C PD  T+NL++D+ GK   
Sbjct: 757 FKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMR 816

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
            ++M +V K  MH K                                   Y  +++TY  
Sbjct: 817 VEEMLKVQKE-MHRK----------------------------------GYESTYVTYNT 841

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           II+       + +A +++  L   G      T   +L+    +G   +A+ LF      G
Sbjct: 842 IISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYG 901

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             P+ + Y +L   +  A   E V +L ++M + GI P+ + +   ++T  ++
Sbjct: 902 CEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTA 954


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 161/356 (45%), Gaps = 8/356 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI    K+G    A  L S M    C+P+   YN L+          KA        
Sbjct: 307 FNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVV 366

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
               G+    P+ VTYNIL+    +   ++    +F  ++ + L PD +T+  ++D   K
Sbjct: 367 DN--GL---LPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCK 421

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +++   +L  M       D +TF  LID + K      +  +F++++ ++   T  T
Sbjct: 422 LGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHT 481

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           FN  +   GK     +A  +  KM      PS +T+  +I  +      + + ++ + + 
Sbjct: 482 FNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMK 541

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G    V T   ++   C NG   EA+ +  +  + GV+P+  TY +L KA+ KA   +
Sbjct: 542 QAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLD 601

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETF--SSSLAGSQSGSAKTDL-TRSLSTAKS 366
              +++  M +NG  PN   +   L  F  S++  G+++ S+  DL  RSLS+ ++
Sbjct: 602 RAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEEN 657



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 155/368 (42%), Gaps = 46/368 (12%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLH 58
           M K+     ++  YS LI  + + G+   A  L  EM   GC+P    Y  LI A   + 
Sbjct: 189 MSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIG 248

Query: 59  TRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL-RACAQARNVDQVNALFKELHESIL 117
             DKA  +   +         + C PN+ TY IL+ R C + + +++ N +F+++ +  L
Sbjct: 249 MTDKAMKMLDEMA-------TKACVPNVHTYTILIDRLCREGK-IEEANGVFRKMLKHGL 300

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
            P I T+N +++ Y K G +     +LS M+   CKP+I T+N L++   +     K   
Sbjct: 301 CPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFL 360

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           + + ++ +   P   T+N ++  + K      A  +F  M +    P   T+  +I    
Sbjct: 361 LLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLC 420

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN---------SH 288
               + +A  I   + K G  +   T  A+++ +C  G   +   LFEN         +H
Sbjct: 421 KLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAH 480

Query: 289 NM--------------------------GVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
                                       G+ P   T+ +L + + +A    L  K+L+RM
Sbjct: 481 TFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERM 540

Query: 323 EQNGIVPN 330
           +Q G  PN
Sbjct: 541 KQAGCSPN 548



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 145/320 (45%), Gaps = 16/320 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  ++  + K G  + A     ++   G   D  V  +L+ A+    D    L +A   F
Sbjct: 131 YRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDD----LGEAFRVF 186

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KM   E C+PN VTY+IL+    +A  +++   L +E+ E    P   TY  ++ A   
Sbjct: 187 EKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCD 246

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            GM  +   +L  M +  C P++ T+ +LID   +    ++   VF+ ++     P + T
Sbjct: 247 IGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIIT 306

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVSRAREIFD 250
           FN++I  Y K   +G     FQ ++ M+     P+  TY  +  M G C  VS++ + F 
Sbjct: 307 FNALINGYCK---EGWVVSAFQLLSVMEKGNCKPNIRTYNEL--MEGLC-RVSKSYKAFL 360

Query: 251 ELSKLGKDMKVS---TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
            L ++  +  +    T N +++ +C  G    A  +F + ++ G+ PD  T+  L     
Sbjct: 361 LLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLC 420

Query: 308 KANMKELVQKLLKRMEQNGI 327
           K    E    +L  M + GI
Sbjct: 421 KLGRLEQANGILGSMVKKGI 440



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/323 (20%), Positives = 138/323 (42%), Gaps = 9/323 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ LI    K G+ +   +LF  M  + C      +N  + A L    K       
Sbjct: 443 DEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDA-LGKDYKLNEANAM 501

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           LG   K   +    P++VT+ IL+    +A        + + + ++  +P++YTY  +++
Sbjct: 502 LGKMMKYGLV----PSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIIN 557

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
               NG ++E E++L  M S    P+  T+ +L+ ++ K    D+  Q+  +++ +  +P
Sbjct: 558 GLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQP 617

Query: 190 TLPTFNSMIINY--GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
               +++++  +      +  +A      + A   +       C+ +      +V  A +
Sbjct: 618 NSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALK 677

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           I DE+ K G   +    N ++   C  G   EAD L ++    G+ PD +   ++ + Y 
Sbjct: 678 IRDEIKKCGVPTE-DLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSII-EHYC 735

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           K    +   + +K +  N  VP+
Sbjct: 736 KTCKYDNCLEFMKLVLDNKFVPS 758



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 78/184 (42%)

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           K   C+P+ +T+++LI    +    ++  Q+ + ++    +P+  T+  +I       + 
Sbjct: 191 KEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMT 250

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            KA  +  +M      P+  TY  +I        +  A  +F ++ K G    + T NA+
Sbjct: 251 DKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNAL 310

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +  YC  G    A  L          P+  TY  L +   + +       LL+R+  NG+
Sbjct: 311 INGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGL 370

Query: 328 VPNK 331
           +P++
Sbjct: 371 LPDR 374



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 91/222 (40%), Gaps = 11/222 (4%)

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  V++A  KNG ++  E    ++       D      L+ +  +R    +  +VF+ + 
Sbjct: 131 YRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKM- 189

Query: 184 HSKEKPTLP---TFNSMIINYGKARLQGKAEYVFQ---KMTAMKYTPSFITYECIITMYG 237
            SKE+   P   T++ +I    +A   G+ E  FQ   +M      PS  TY  +I    
Sbjct: 190 -SKEESCRPNSVTYSILIHGLCEA---GRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKC 245

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
                 +A ++ DE++       V T   +++  C  G   EA+ +F      G+ P   
Sbjct: 246 DIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGII 305

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
           T+  L   Y K        +LL  ME+    PN R + E +E
Sbjct: 306 TFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELME 347


>gi|410110147|gb|AFV61153.1| pentatricopeptide repeat-containing protein 123, partial [Phyla
           nodiflora]
          Length = 419

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 135/297 (45%), Gaps = 5/297 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  + S LI +  K      A+ +FS ++ SG  PD   YNA+I        KAK   +
Sbjct: 27  GDLVLXSNLIELSRKLCDYSKAISIFSRLKXSGXXPDLXAYNAMINVF----GKAKLFRE 82

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +MK      P   +Y+ LL    +     +  ++F E+ E     D+ T N ++
Sbjct: 83  ARSLIXEMK-TAGVMPXTTSYSTLLTMYVENXKFLEALSVFSEMREXKCLXDLXTCNIMI 141

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +     +
Sbjct: 142 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIE 201

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSMI+ YGK     KA  + Q+M +    P+ ITY  II+++G    + RA  +
Sbjct: 202 QNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAML 261

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           F +L   G ++       M+ AY   GL   A  L          P  +   +L  A
Sbjct: 262 FQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGA 318



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 144/312 (46%), Gaps = 5/312 (1%)

Query: 18  IAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMK 77
           I   GK+G    A+    +M       D  + + LI       D +KA++     F ++K
Sbjct: 1   ITHFGKEGLFDXALSWLQKMEXDXVPGDLVLXSNLIELSRKLCDYSKAIS----IFSRLK 56

Query: 78  GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMI 137
                 P++  YN ++    +A+   +  +L  E+  + + P   +Y+ ++  Y +N   
Sbjct: 57  -XSGXXPDLXAYNAMINVFGKAKLFREARSLIXEMKTAGVMPXTTSYSTLLTMYVENXKF 115

Query: 138 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 197
            E  SV S M+  +C  D+ T N++ID YG+     + +++F  +     +P + ++N++
Sbjct: 116 LEALSVFSEMREXKCLXDLXTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 175

Query: 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK 257
           +  YG A L G+A ++F+ M       + +TY  +I +YG      +A  +  E+   G 
Sbjct: 176 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGI 235

Query: 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
           +    T + ++  +   G    A +LF+   + GV  D   ++ +  AY +A +    ++
Sbjct: 236 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKR 295

Query: 318 LLKRMEQNGIVP 329
           LL  +++   +P
Sbjct: 296 LLHELKRPDNIP 307



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 142/324 (43%), Gaps = 15/324 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I V GK    R A  L  EM+ +G  P  + Y+ L+T ++          +A
Sbjct: 63  DLXAYNAMINVFGKAKLFREARSLIXEMKTAGVMPXTTSYSTLLTMYVEN----XKFLEA 118

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  F +M+   +C  ++ T NI++    Q     + + LF  + +  + P++ +YN ++ 
Sbjct: 119 LSVFSEMREX-KCLXDLXTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLR 177

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YG   +  E   +   M+    + +++T+N +I  YGK    +K   + + +     +P
Sbjct: 178 VYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEP 237

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T++++I  +GK     +A  +FQK+ +       I ++ +I  Y     V+ A+ + 
Sbjct: 238 NSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLL 297

Query: 250 DELSK---LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            EL +   + +D  +  L          G   EA  +F  + + G   D + ++ +    
Sbjct: 298 HELKRPDNIPRDTAIHILAG-------AGRIEEATYVFRQAIDSGEVKDITVFERMIHLL 350

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
           +K      V ++  +M   G  P+
Sbjct: 351 SKYKKYMNVVEVFDKMRGLGYFPD 374



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 90/200 (45%)

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           +GK G+     S L +M+ +    D++  + LI+   K   + K   +F  L  S   P 
Sbjct: 4   FGKEGLFDXALSWLQKMEXDXVPGDLVLXSNLIELSRKLCDYSKAISIFSRLKXSGXXPD 63

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           L  +N+MI  +GKA+L  +A  +  +M      P   +Y  ++TMY        A  +F 
Sbjct: 64  LXAYNAMINVFGKAKLFREARSLIXEMKTAGVMPXTTSYSTLLTMYVENXKFLEALSVFS 123

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+ +      + T N M++ Y   G+  EAD LF     MG+ P+  +Y  L + Y  A 
Sbjct: 124 EMREXKCLXDLXTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAE 183

Query: 311 MKELVQKLLKRMEQNGIVPN 330
           +      L + M++  I  N
Sbjct: 184 LFGEAIHLFRLMQRKNIEQN 203



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 114/271 (42%), Gaps = 36/271 (13%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           +I V G+ G  + A  LF  MR  G  P+   YN L+  +      A+   +A+  F+ M
Sbjct: 140 MIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY----GDAELFGEAIHLFRLM 195

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +  +  + N+VTYN ++    +    ++ N L +E+    + P+  TY+ ++  +GK G 
Sbjct: 196 Q-RKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGK 254

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSY--------GKRQAFD--------------- 173
           +     +  +++S+  + D I F  +I +Y         KR   +               
Sbjct: 255 LDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHI 314

Query: 174 -----KMEQ---VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
                ++E+   VF+  + S E   +  F  MI    K +       VF KM  + Y P 
Sbjct: 315 LAGAGRIEEATYVFRQAIDSGEVKDITVFERMIHLLSKYKKYMNVVEVFDKMRGLGYFPD 374

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLG 256
                 ++  YG      +A +I+ E+ ++G
Sbjct: 375 SNVIAVVLNAYGKLHEFDKASDIYMEMQEVG 405



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 83/189 (43%)

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           S+ SR+K +   PD+  +N +I+ +GK + F +   +   +  +   P   ++++++  Y
Sbjct: 50  SIFSRLKXSGXXPDLXAYNAMINVFGKAKLFREARSLIXEMKTAGVMPXTTSYSTLLTMY 109

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            +     +A  VF +M   K      T   +I +YG       A ++F  + K+G +  V
Sbjct: 110 VENXKFLEALSVFSEMREXKCLXDLXTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 169

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            + N +L  Y    L  EA  LF       +  +  TY  +   Y K    E    L++ 
Sbjct: 170 VSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQE 229

Query: 322 MEQNGIVPN 330
           M+  GI PN
Sbjct: 230 MQSRGIEPN 238


>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 139/317 (43%), Gaps = 29/317 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT-----AHLHTRDKAKALAK 68
           Y+ +I  + K      A+ LFS+M  +GC+P+   Y+ L+        L+  D    ++K
Sbjct: 296 YNTMIEALAKGRMADKAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQLNKLDNIVEMSK 355

Query: 69  A----------------LGY-------FQKMKGMERCKPNIVTYNILLRACAQARNVDQV 105
                            LG+       F  M  +   K +   Y  +L +   +  + + 
Sbjct: 356 KYMNKQIYAYFVRTLSKLGHSSEAHRLFCNMWNVHD-KGDKDAYMSMLESLCSSGKIAEA 414

Query: 106 NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
             L    HE  +  D   YN V  A G+   +  +  +  +MK +   PDI T+N+LI S
Sbjct: 415 IDLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISS 474

Query: 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
           YG+    D   ++F+ L +S  +P + ++NS+I   GK     +A   F++M      P 
Sbjct: 475 YGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPD 534

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
            +TY  +I  +G  D V  A  +FDE+   G    + T N +L+    +G   EA  L+ 
Sbjct: 535 VVTYSTLIECFGKTDKVEMACSLFDEMIAEGCSPNLVTYNILLDCLERSGRTAEAVDLYA 594

Query: 286 NSHNMGVTPDSSTYKLL 302
                G+TPDS TY +L
Sbjct: 595 KLKQQGLTPDSITYAVL 611



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 106/227 (46%), Gaps = 8/227 (3%)

Query: 6   WYIADTG---IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           W + D G    Y  ++  +   G+   A+ L +         D  +YN + TA      +
Sbjct: 387 WNVHDKGDKDAYMSMLESLCSSGKIAEAIDLLNRFHEKCITTDTIMYNTVFTA----LGR 442

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K ++     ++KMK  +   P+I TYNIL+ +  +A  VD    +F+EL  S   PD+ 
Sbjct: 443 LKQVSHIHDLYEKMK-QDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVI 501

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN +++  GKNG + E       M+     PD++T++ LI+ +GK    +    +F  +
Sbjct: 502 SYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACSLFDEM 561

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
           +     P L T+N ++    ++    +A  ++ K+     TP  ITY
Sbjct: 562 IAEGCSPNLVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITY 608



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 144/356 (40%), Gaps = 46/356 (12%)

Query: 10  DTGIYSKLIAVMGKKG-QTRLAMW--LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           D  IY++L   + +   Q R      L  +M   G +   S  N LI       D+   L
Sbjct: 120 DPFIYNRLFLTLSRSSSQLRFEQTESLLDDMEKRGVKGSISTVNILI-GFFGDLDRCVGL 178

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            K  G           + N  +Y  LL+   + R+ D+   ++ ++     + DI+ +N 
Sbjct: 179 VKKWGL----------RFNAYSYKCLLQGYLRLRDCDKAFGVYLDMLRCGYSLDIFAFNM 228

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++DA  K+  + +   V   MK   C+PD  T+ ++I   GK    D+   +F++++   
Sbjct: 229 LLDALAKDQKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKG 288

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM------YGYCD 240
               L  +N+MI    K R+  KA  +F KM      P+  TY  ++ +          D
Sbjct: 289 FTLNLIAYNTMIEALAKGRMADKAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQLNKLD 348

Query: 241 NVSRA------REIF----DELSKLGKDMKVSTL----------------NAMLEAYCMN 274
           N+         ++I+      LSKLG   +   L                 +MLE+ C +
Sbjct: 349 NIVEMSKKYMNKQIYAYFVRTLSKLGHSSEAHRLFCNMWNVHDKGDKDAYMSMLESLCSS 408

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           G   EA  L    H   +T D+  Y  ++ A  +      +  L ++M+Q+G  P+
Sbjct: 409 GKIAEAIDLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPD 464



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 137/347 (39%), Gaps = 37/347 (10%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A  ++ +M   G   D   +N L+ A      K + + KA   F+ MK    C+P+  TY
Sbjct: 207 AFGVYLDMLRCGYSLDIFAFNMLLDA----LAKDQKVDKAYKVFEDMK-RRHCEPDTFTY 261

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
            I++R   +A   D+  ALF+ + E     ++  YN +++A  K  M  +   + S+M  
Sbjct: 262 TIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEALAKGRMADKAVLLFSKMVE 321

Query: 150 NQCKPDIITFNLLID-------------------SYGKRQAFDKMEQVFKSLMHSKEKPT 190
           N C+P+  T+++L++                    Y  +Q +    +    L HS E   
Sbjct: 322 NGCQPNEFTYSVLLNVLVAEGQLNKLDNIVEMSKKYMNKQIYAYFVRTLSKLGHSSEAHR 381

Query: 191 L-------------PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           L               + SM+ +   +    +A  +  +      T   I Y  + T  G
Sbjct: 382 LFCNMWNVHDKGDKDAYMSMLESLCSSGKIAEAIDLLNRFHEKCITTDTIMYNTVFTALG 441

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
               VS   ++++++ + G    + T N ++ +Y   G    A  +FE   N    PD  
Sbjct: 442 RLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVI 501

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           +Y  L     K    +      K M++ G+ P+   +   +E F  +
Sbjct: 502 SYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKT 548



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 9/162 (5%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ     D   Y+ LI+  G+ G+   A+ +F E+ NS C+PD   YN+LI       D 
Sbjct: 457 KQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDV 516

Query: 63  AKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +A  +    F++M  KG+    P++VTY+ L+    +   V+   +LF E+     +P+
Sbjct: 517 DEAHMR----FKEMQEKGL---NPDVVTYSTLIECFGKTDKVEMACSLFDEMIAEGCSPN 569

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           + TYN ++D   ++G   E   + +++K     PD IT+ +L
Sbjct: 570 LVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVL 611



 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 78/195 (40%), Gaps = 6/195 (3%)

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
            ++ ES+L  M+    K  I T N+LI  +G     D+   + K       +    ++  
Sbjct: 140 FEQTESLLDDMEKRGVKGSISTVNILIGFFGD---LDRCVGLVKKW---GLRFNAYSYKC 193

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           ++  Y + R   KA  V+  M    Y+     +  ++        V +A ++F+++ +  
Sbjct: 194 LLQGYLRLRDCDKAFGVYLDMLRCGYSLDIFAFNMLLDALAKDQKVDKAYKVFEDMKRRH 253

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
            +    T   M+      G   E+  LF+     G T +   Y  + +A  K  M +   
Sbjct: 254 CEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEALAKGRMADKAV 313

Query: 317 KLLKRMEQNGIVPNK 331
            L  +M +NG  PN+
Sbjct: 314 LLFSKMVENGCQPNE 328


>gi|410110063|gb|AFV61111.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           barbata]
          Length = 364

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 130/276 (47%), Gaps = 5/276 (1%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ +FS ++ SG  PD   YNA+I        KAK   +A     +MK      PN  +Y
Sbjct: 6   AISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFREARSLISEMK-XAGVMPNTTSY 60

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           + LL    + +   +  ++F E+ E     D+ T N ++D YG+ GM KE + +   M+ 
Sbjct: 61  STLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 120

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
              +P+++++N L+  YG  + F +   +F+ +     +  + T+NSM++ YGK     K
Sbjct: 121 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 180

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  + Q+M +    P+ ITY  II+++G    + RA  +F +L   G ++       M+ 
Sbjct: 181 ANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIV 240

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           AY   GL   A  L          P  +   +L  A
Sbjct: 241 AYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGA 276



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 130/263 (49%), Gaps = 1/263 (0%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +KA+  F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  +Y+ 
Sbjct: 4   SKAISIFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXAGVMPNTTSYST 62

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +    
Sbjct: 63  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG      +A 
Sbjct: 123 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 182

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G +    T + ++  +   G    A +LF+   + GV  D   ++ +  AY
Sbjct: 183 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 242

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            +A +    ++LL  +++   +P
Sbjct: 243 ERAGLVAHAKRLLHELKRPDNIP 265



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/343 (21%), Positives = 151/343 (44%), Gaps = 15/343 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEM+ +G  P+ + Y+ L+T ++     
Sbjct: 14  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXAGVMPNTTSYSTLLTMYVEN--- 70

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   +AL  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ 
Sbjct: 71  -KKFLEALSVFSEMREI-KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 128

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++  YG   +  E   +   M+    + +++T+N ++  YGK    +K   + + +
Sbjct: 129 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 188

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P   T++++I  +GK     +A  +FQK+ +       I ++ +I  Y     V
Sbjct: 189 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLV 248

Query: 243 SRAREIFDELSK---LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           + A+ +  EL +   + +D  +  L          G   EA  +F  + + G   D + +
Sbjct: 249 AHAKRLLHELKRPDNIPRDTAIHILAGA-------GRIEEATYVFRQAIDAGEVKDITVF 301

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           + +    +K      V ++  +M   G  P+       L  + 
Sbjct: 302 ERMIHLLSKYKKYSNVXEVFDKMRGLGYFPDSNVIAVVLNAYG 344



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 75/159 (47%)

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
           + K   +F  L  S   P L  +N+MI  +GKA+L  +A  +  +M      P+  +Y  
Sbjct: 3   YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXAGVMPNTTSYST 62

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           ++TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF     MG
Sbjct: 63  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 123 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 161



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 114/271 (42%), Gaps = 36/271 (13%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           +I V G+ G  + A  LF  MR  G  P+   YN L+  +      A+   +A+  F+ M
Sbjct: 98  MIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY----GDAELFGEAIHLFRLM 153

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +  +  + N+VTYN ++    +    ++ N L +E+    + P+  TY+ ++  +GK G 
Sbjct: 154 Q-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGK 212

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSY--------GKRQAFD--------------- 173
           +     +  +++S+  + D I F  +I +Y         KR   +               
Sbjct: 213 LDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHI 272

Query: 174 -----KMEQ---VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
                ++E+   VF+  + + E   +  F  MI    K +       VF KM  + Y P 
Sbjct: 273 LAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVXEVFDKMRGLGYFPD 332

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLG 256
                 ++  YG      +A +++ E+ ++G
Sbjct: 333 SNVIAVVLNAYGKLXEFDKANDVYMEMQEVG 363



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 86/189 (45%)

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           S+ SR+K +   PD++ +N +I+ +GK + F +   +   +  +   P   ++++++  Y
Sbjct: 8   SIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXAGVMPNTTSYSTLLTMY 67

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            + +   +A  VF +M  +K      T   +I +YG       A ++F  + K+G +  V
Sbjct: 68  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 127

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            + N +L  Y    L  EA  LF       +  +  TY  +   Y K    E    L++ 
Sbjct: 128 VSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQE 187

Query: 322 MEQNGIVPN 330
           M+  GI PN
Sbjct: 188 MQSRGIEPN 196


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 147/330 (44%), Gaps = 10/330 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ LI    KKG+   A  LF EM   G   +   Y  LI    H   K     +    
Sbjct: 200 IYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLI----HGLFKNGIKKQGFEM 255

Query: 73  FQKMKGMERCKPNIVTYNILL-RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           ++KM+      PN+ TYN ++ + C   R  D    +F E+ E  ++ +I TYN ++   
Sbjct: 256 YEKMQ-EHGVFPNLHTYNCVMNQLCKDGRTKDAFK-VFDEMRERGVSCNIVTYNTLIGGL 313

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            +     E   V+ +MKS+   P++IT+N LID +   +   K   + + L      P+L
Sbjct: 314 CREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSL 373

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+N ++  + K      A  V ++M      PS +TY  +I  +   DN+ +A ++   
Sbjct: 374 VTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSS 433

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + +LG    V T + ++  +C+ G   EA  LF++       P+   Y  +   Y K   
Sbjct: 434 MEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGS 493

Query: 312 KELVQKLLKRMEQNGIVPNK---RFFLEAL 338
                +L + ME+  + PN    R+ +E L
Sbjct: 494 SYRALRLFREMEEKELPPNVASYRYMIEVL 523



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 147/317 (46%), Gaps = 9/317 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ ++  + K G+T+ A  +F EMR  G   +   YN LI   L    KA    + +   
Sbjct: 271 YNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGG-LCREMKANEANEVM--- 326

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +MK  +   PN++TYN L+      R + +  +L ++L    L+P + TYN ++  + K
Sbjct: 327 DQMKS-DGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCK 385

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G       V+  M+    KP  +T+ +LID++ +    +K  Q+  S+      P + T
Sbjct: 386 KGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHT 445

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS--RAREIFDE 251
           ++ +I  +       +A  +F+ M   K+ P+ + Y  ++   GYC   S  RA  +F E
Sbjct: 446 YSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMV--LGYCKEGSSYRALRLFRE 503

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + +      V++   M+E  C      EA+ L E   + G+ P  S   L+ +A   ++ 
Sbjct: 504 MEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGPSDSILNLISRAKNDSHS 563

Query: 312 KELVQKLLKRMEQNGIV 328
           + + ++    M  +G++
Sbjct: 564 RSMDEEEPASMVFDGLM 580



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 146/326 (44%), Gaps = 11/326 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           +A+   Y+ LI  + K G  +    ++ +M+  G  P+   YN ++   L    + K   
Sbjct: 230 VANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMN-QLCKDGRTK--- 285

Query: 68  KALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            A   F +M+  ER    NIVTYN L+    +    ++ N +  ++    + P++ TYN 
Sbjct: 286 DAFKVFDEMR--ERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNT 343

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++D +     + +  S+   +KS    P ++T+N+L+  + K+       +V K +    
Sbjct: 344 LIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERG 403

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSR 244
            KP+  T+  +I  + ++    KA  +   M  +  TP   TY  +I  +G+C    ++ 
Sbjct: 404 IKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLI--HGFCIKGRMNE 461

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  +F  + +   +      N M+  YC  G    A  LF       + P+ ++Y+ + +
Sbjct: 462 ASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIE 521

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
              K    +  + L+++M  +GI P+
Sbjct: 522 VLCKERKSKEAEGLVEKMIDSGIGPS 547



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 146/317 (46%), Gaps = 10/317 (3%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           +++ F+EM + G  P  + +N L+T  +     + +  +   +F + K   +   ++ ++
Sbjct: 113 SIYYFNEMVDKGFVPGSNCFNNLLTFVV----GSSSFNQWWCFFNESK--IKVVLDVYSF 166

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
            I+++ C +A  +++   L  EL E   +P++  Y  ++D   K G I++ + +   M  
Sbjct: 167 GIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGK 226

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
                +  T+ +LI    K     +  ++++ +      P L T+N ++    K      
Sbjct: 227 FGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKD 286

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNV--SRAREIFDELSKLGKDMKVSTLNAM 267
           A  VF +M     + + +TY  +I   G C  +  + A E+ D++   G +  + T N +
Sbjct: 287 AFKVFDEMRERGVSCNIVTYNTLIG--GLCREMKANEANEVMDQMKSDGINPNLITYNTL 344

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           ++ +C      +A  L  +  + G++P   TY +L   + K        K++K ME+ GI
Sbjct: 345 IDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGI 404

Query: 328 VPNKRFFLEALETFSSS 344
            P+K  +   ++TF+ S
Sbjct: 405 KPSKVTYTILIDTFARS 421



 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 84/212 (39%), Gaps = 11/212 (5%)

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  +++AY ++  +       + M      P    FN L+       +F++    F    
Sbjct: 97  YEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFN--- 153

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYC- 239
            SK K  L  ++  I+  G     G+ E  F  +  ++   ++P+ + Y  +I   G C 
Sbjct: 154 ESKIKVVLDVYSFGIVIKGCCE-AGEIEKSFDLLVELREFGFSPNVVIYTTLID--GCCK 210

Query: 240 -DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              + +A+++F E+ K G      T   ++     NG+  +   ++E     GV P+  T
Sbjct: 211 KGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHT 270

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y  +     K    +   K+   M + G+  N
Sbjct: 271 YNCVMNQLCKDGRTKDAFKVFDEMRERGVSCN 302


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 142/334 (42%), Gaps = 21/334 (6%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I D   Y+ LI    K G    A   F EM + GC P    Y AL+ A+L    K K + 
Sbjct: 487 IPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYL----KTKQVP 542

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL--------------- 112
           +A   F +M     C PN +TY+ L+    +A    +   ++ ++               
Sbjct: 543 QASDIFHRMVD-AGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEG 601

Query: 113 -HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171
            H   +AP++ TY  ++D   K   + + + +L  M SN C+P+ I ++ LID + K   
Sbjct: 602 EHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGK 661

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
            D  ++VF  +      PT+ T+ S+I    K R    A  V  +M     TP+ +TY  
Sbjct: 662 LDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTA 721

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           +I          +A ++   + K G +  V T  ++++    +G    +  LF      G
Sbjct: 722 MIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQG 781

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
             P+  TY++L      A + +    LL  M+Q 
Sbjct: 782 CAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQT 815



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 124/276 (44%), Gaps = 18/276 (6%)

Query: 73  FQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           FQ +K M R    P+  TY+ ++    +A  V++   LF+E+    + PD+YTY  ++D+
Sbjct: 440 FQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDS 499

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K G+I++  S    M+S  C P ++T+  L+ +Y K +   +   +F  ++ +   P 
Sbjct: 500 FCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPN 559

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAM----------------KYTPSFITYECIIT 234
             T+++++    KA    KA  V+ KM                      P+ +TY  +I 
Sbjct: 560 TITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALID 619

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
                  V  A+E+ D +S  G +      +A+++ +C  G    A  +F      G  P
Sbjct: 620 GLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLP 679

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              TY  L  A  K    +L  K+L +M ++   PN
Sbjct: 680 TVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPN 715



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 133/338 (39%), Gaps = 40/338 (11%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I +   Y  L+A   KK Q      + S M N GC P+PS++N+L+ ++ + RD   A  
Sbjct: 306 IPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYK 365

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
                  +M G   C P  V YNI + +                  E + +PD       
Sbjct: 366 ----LLNRMAGCG-CPPGYVVYNIFIGSICSG--------------EELPSPD------- 399

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQC---KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
                   ++   E V   M ++ C   K +   F   +   GK   FDK  Q+ K +M 
Sbjct: 400 --------LLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGK---FDKAFQIIKLMMR 448

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P   T++ +I    +A    KA  +FQ+M ++   P   TY  +I  +     + +
Sbjct: 449 KGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQ 508

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           AR  FDE+  +G    V T  A+L AY       +A  +F    + G  P++ TY  L  
Sbjct: 509 ARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVD 568

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
              KA   +   ++  +M          F+ E   T S
Sbjct: 569 GLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDS 606



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 141/328 (42%), Gaps = 16/328 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K  +   A  L   M ++GC P+  +Y+ALI        K   L  A   F
Sbjct: 614 YGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFC----KVGKLDNAQEVF 669

Query: 74  QKMKGMERCK--PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M    +C   P + TY  L+ A  + R +D    +  ++ ES   P++ TY  ++D  
Sbjct: 670 FRMS---KCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGL 726

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G  ++   +LS M+   C P+++T+  LID  GK    D   Q+F  ++     P  
Sbjct: 727 CRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNY 786

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+  +I +   A L  +A  +  +M    Y P ++   C +   G+      +  + +E
Sbjct: 787 VTYRVLINHCCAAGLLDEAHSLLSEMK-QTYWPKYVQGYCSVVQ-GFSKKFIASLGLLEE 844

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNG-LPTEADL---LFENSHNMGVTPDSSTYKLLYKAYT 307
           L   G          +++++   G L    +L   + E S ++ +T    TY  L +A  
Sbjct: 845 LESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNIT-SKDTYTSLIQALC 903

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFL 335
            A+  E   +L   + + G+VP    F+
Sbjct: 904 LASQLEKAFELYSEITRKGVVPELSAFI 931



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/383 (21%), Positives = 150/383 (39%), Gaps = 53/383 (13%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           ++Q  Y      Y+ L  V+    + R    L  E+       D  V   L+   +    
Sbjct: 128 ERQVGYSHTGACYNALAEVLHFDDRARTTERLLREIGED----DREVLGRLLNVIVRKCC 183

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           +  A AKAL    ++K     +P+  TYN L++  A A  +D    + KE+ E     D 
Sbjct: 184 RHGAWAKALEELGRLKDFGY-RPSGATYNALVQVLATAGQMDMGFRVQKEMSELGFCTDK 242

Query: 122 YTYNGVMDAYGKNG--------------------------------MIKEMESVLSRMKS 149
           +T      A  K G                                +  E  S L RM+ 
Sbjct: 243 FTVGCFAQALCKEGRWSDALVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRC 302

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
           N C P+++T+  L+  + K++     +++   +M+    P    FNS++ +Y  AR    
Sbjct: 303 NSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPY 362

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYC--------DNVSRAREIFDELSKLGKDMKV 261
           A  +  +M      P ++ Y   I +   C        D ++ A ++++E+  L     +
Sbjct: 363 AYKLLNRMAGCGCPPGYVVYN--IFIGSICSGEELPSPDLLALAEKVYEEM--LASSCVL 418

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKAYTKANMKELVQKL 318
           + +N    A C+ G+  + D  F+    M   G  PD+STY  +     +A   E    L
Sbjct: 419 NKVNTANFARCLCGM-GKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLL 477

Query: 319 LKRMEQNGIVPNKRFFLEALETF 341
            + M+  G++P+   +   +++F
Sbjct: 478 FQEMKSVGVIPDVYTYTILIDSF 500


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 151/332 (45%), Gaps = 8/332 (2%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           Q  R     +  Y+ L+    +  +  LA+  F ++  +G R +  + N L+      + 
Sbjct: 102 QGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKR 161

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHE--SILA 118
             +AL   L    ++     C P++ +Y+ILL++ C Q ++  Q + L + + E  ++ +
Sbjct: 162 TDEALDILLHRTPELG----CVPDVFSYSILLKSLCDQGKS-GQADDLLRMMAEGGAVCS 216

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD+  Y+ V+D + K G + +   +   M      PD +T++ ++ +  K +A DK E  
Sbjct: 217 PDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAF 276

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
            + +++    P   T+N++I  Y       +A  VF++M      P  +T   ++     
Sbjct: 277 LRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 336

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              +  AR++FD ++  G++  V +   ML  Y   G   +   LF+     G+ PD  T
Sbjct: 337 YGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYT 396

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + +L KAY    M +    +   M  +G+ P+
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPD 428



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 147/360 (40%), Gaps = 48/360 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS +I    K+G    A  LF EM   G  PD   Y++++    H   KA+A+ KA
Sbjct: 218 DVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVV----HALCKARAMDKA 273

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI------ 121
             + ++M  KG+    PN  TYN L+   +      +   +FKE+    + PD+      
Sbjct: 274 EAFLRQMVNKGV---LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSML 330

Query: 122 -----------------------------YTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
                                        ++Y  +++ Y   G + +M  +   M  +  
Sbjct: 331 MGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGI 390

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            PDI TFN+LI +Y      DK   +F  +     KP + T+ ++I    +      A  
Sbjct: 391 APDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAME 450

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVS--RAREIFDELSKLGKDMKVSTLNAMLEA 270
            F +M      P    Y C+I   G+C + S  +A+E+  E+   G  + +   ++++  
Sbjct: 451 KFNQMIDQGVAPDKYAYHCLIQ--GFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINN 508

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            C  G   +A  +F+ + N+G+ P +  Y +L   Y      E   ++   M   GI PN
Sbjct: 509 LCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 568



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 146/308 (47%), Gaps = 13/308 (4%)

Query: 41  GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM-KGMERCKPNIVTYNILLRACAQA 99
           GC PD   Y+ L+ +     D+ K+  +A    + M +G   C P++V Y+ ++    + 
Sbjct: 177 GCVPDVFSYSILLKSLC---DQGKS-GQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKE 232

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
            +V++   LFKE+ +  + PD  TY+ V+ A  K   + + E+ L +M +    P+  T+
Sbjct: 233 GDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTY 292

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM---IINYGKARLQGKAEYVFQK 216
           N LI  Y     + +  +VFK +      P + T + +   +  YGK +   +A  VF  
Sbjct: 293 NNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIK---EARDVFDT 349

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M      P+  +Y  ++  Y     +    ++FD +   G    + T N +++AY   G+
Sbjct: 350 MAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGM 409

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKLLKRMEQNGIVPNKRFFL 335
             +A ++F    + GV PD  TY+ +  A  +   M + ++K  + ++Q G+ P+K  + 
Sbjct: 410 LDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQ-GVAPDKYAYH 468

Query: 336 EALETFSS 343
             ++ F +
Sbjct: 469 CLIQGFCT 476



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/329 (20%), Positives = 134/329 (40%), Gaps = 5/329 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++   + D    S L+  + K G+ + A  +F  M   G  P+   Y  ++  +      
Sbjct: 316 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYA----T 371

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L      F  M G +   P+I T+N+L++A A    +D+   +F E+ +  + PD+ 
Sbjct: 372 KGCLVDMTDLFDLMLG-DGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVV 430

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  V+ A  + G + +     ++M      PD   ++ LI  +    +  K +++   +
Sbjct: 431 TYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEI 490

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           M++     +  F+S+I N  K      A+ +F     +   P+ + Y  ++  Y     +
Sbjct: 491 MNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKM 550

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +FD +   G +        ++  YC  G   E   LF      G+ P +  Y ++
Sbjct: 551 EKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNII 610

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNK 331
                +A      +     M ++GI  NK
Sbjct: 611 IDGLFEAGRTVPAKVKFHEMTESGIAMNK 639



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 123/278 (44%), Gaps = 9/278 (3%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF  M   G  PD   +N LI A+ +       L KA+  F +M+     KP++VTY  +
Sbjct: 381 LFDLMLGDGIAPDIYTFNVLIKAYAN----CGMLDKAMIIFNEMRD-HGVKPDVVTYRTV 435

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           + A  +   +D     F ++ +  +APD Y Y+ ++  +  +G + + + ++S + +N  
Sbjct: 436 IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGM 495

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
             DI+ F+ +I++  K       + +F   ++    PT   ++ ++  Y       KA  
Sbjct: 496 HLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALR 555

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL--NAMLEA 270
           VF  M +    P+ + Y  ++  Y     +     +F E+  L K +K ST+  N +++ 
Sbjct: 556 VFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREM--LQKGIKPSTILYNIIIDG 613

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
               G    A + F      G+  +  TY ++ +   K
Sbjct: 614 LFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFK 651



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 141/362 (38%), Gaps = 38/362 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD--KAKALA 67
           D   Y  +IA + + G+   AM  F++M + G  PD   Y+ LI          KAK L 
Sbjct: 428 DVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELI 487

Query: 68  KAL---------GYFQKMKGMERCK--------------------PNIVTYNILLRACAQ 98
             +          +F  +     CK                    P  V Y++L+     
Sbjct: 488 SEIMNNGMHLDIVFFSSIIN-NLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCL 546

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
              +++   +F  +  + + P+   Y  +++ Y K G I E  S+   M     KP  I 
Sbjct: 547 VGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTIL 606

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +N++ID   +       +  F  +  S       T+N ++    K R   +A ++F+++ 
Sbjct: 607 YNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELR 666

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           AM    + IT   +I        V  A+++F  +S+ G    V T + M+      GL  
Sbjct: 667 AMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVE 726

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           EA+ +F +  N G  PDS     + +   K N        L ++++      + F LE L
Sbjct: 727 EAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDE------RNFSLEHL 780

Query: 339 ET 340
            T
Sbjct: 781 TT 782



 Score = 41.6 bits (96), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 37/197 (18%), Positives = 83/197 (42%), Gaps = 9/197 (4%)

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA-EY 212
           P   T+ +L+D   +    +     F  L+ +  +  +   N ++  + +A+   +A + 
Sbjct: 109 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEALDI 168

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +  +   +   P   +Y   I +   CD   ++ +  D L  + +   V + + +  +  
Sbjct: 169 LLHRTPELGCVPDVFSYS--ILLKSLCDQ-GKSGQADDLLRMMAEGGAVCSPDVVAYSTV 225

Query: 273 MNGLPTEADL-----LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           ++G   E D+     LF+     G+ PD  TY  +  A  KA   +  +  L++M   G+
Sbjct: 226 IDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGV 285

Query: 328 VPNKRFFLEALETFSSS 344
           +PN   +   +  +SS+
Sbjct: 286 LPNNWTYNNLIYGYSST 302


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 155/353 (43%), Gaps = 32/353 (9%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M++    I +  IYS +I  + K G+   A  LF+EM+  G  PD   YN++I       
Sbjct: 245 MEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFC--- 301

Query: 61  DKAKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
             +   + A    Q+M  +ER   P++VTYN L+ A  +     +   L+ E+    + P
Sbjct: 302 -SSGRWSDAEQLLQEM--LERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIP 358

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY-GKRQAFDKMEQV 178
           +  TY+ ++D + K   +   E +   M +  C P++ITFN LID Y G ++  D ME  
Sbjct: 359 NTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGME-- 416

Query: 179 FKSLMHSKEKPTL----PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
              L+H   +  L     T+N++I  +        A  + Q+M +    P  +T  C   
Sbjct: 417 ---LLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVT--CDTL 471

Query: 235 MYGYCDN--VSRAREIFDELSKLGKDM-----------KVSTLNAMLEAYCMNGLPTEAD 281
           + G CDN  +  A E+F  + K  KD+            V T N ++      G   EA+
Sbjct: 472 LDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 531

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            L+E   + G+ PD+ TY  +     K +  +   ++   M      PN   F
Sbjct: 532 ELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 151/329 (45%), Gaps = 17/329 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L+  + ++G+   A+ L   M   G +P    Y  ++       D   AL       
Sbjct: 187 FTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL----NLL 242

Query: 74  QKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           +KM+ +    PN+V Y+ ++ + C   R+ D  N LF E+ E  + PD++TYN ++  + 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQN-LFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
            +G   + E +L  M   +  PD++T+N LI+++ K   F + E+++  ++     P   
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T++SMI  + K      AE++F  M     +P+ IT+  +I  Y     +    E+  E+
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY-------KA 305
           ++ G     +T N ++  + + G    A  L +   + G+ PD  T   L        K 
Sbjct: 422 TETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKL 481

Query: 306 YTKANMKELVQKLLKRMEQ----NGIVPN 330
                M +++QK  K ++     NG+ P+
Sbjct: 482 KDALEMFKVMQKSKKDLDASHPFNGVEPD 510



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 147/343 (42%), Gaps = 26/343 (7%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R    D   Y+ LI    K+G+   A  L+ EM   G  P+   Y+++I      +++ 
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK-QNRL 376

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            A A+ + Y    KG   C PN++T+N L+     A+ +D    L  E+ E+ L  D  T
Sbjct: 377 DA-AEHMFYLMATKG---CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTT 432

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++  +   G +     +L  M S+   PDI+T + L+D            ++FK + 
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQ 492

Query: 184 HSKE-----------KPTLPTFNSMI---INYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
            SK+           +P + T+N +I   IN GK     +AE ++++M      P  ITY
Sbjct: 493 KSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFL---EAEELYEEMPHRGIVPDTITY 549

Query: 230 ECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
             +I   G C    +  A ++FD +        V T   ++  YC  G   +   LF   
Sbjct: 550 SSMID--GLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              G+  ++ TY  L   + K         + + M  +G+ P+
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 141/314 (44%), Gaps = 8/314 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME-RCKPNIVT 88
           A+ LFS+M  S  RP PSV +      +  R +   L  +L  +QKM+  + RC  +I +
Sbjct: 63  AIDLFSDMLRS--RPLPSVVDFCKLMGVVVRMERPDLVISL--YQKMERKQIRC--DIYS 116

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           +NIL++       +    + F ++ +  L PD+ T+  ++        + E      +M 
Sbjct: 117 FNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMF 176

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
              C+P+++TF  L++   +     +   +   +M    +PT  T+ +++    K     
Sbjct: 177 ETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTV 236

Query: 209 KAEYVFQKMTAMKYT-PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            A  + +KM  + +  P+ + Y  II         S A+ +F E+ + G    + T N+M
Sbjct: 237 SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +  +C +G  ++A+ L +      ++PD  TY  L  A+ K       ++L   M   GI
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGI 356

Query: 328 VPNKRFFLEALETF 341
           +PN   +   ++ F
Sbjct: 357 IPNTITYSSMIDGF 370



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 113/280 (40%), Gaps = 22/280 (7%)

Query: 6   WYIADTGIYSKLIA----VMGKKGQTRL--AMWLFSEMRNSGCRPDPSVYNALITAHLHT 59
           + +A  G    LI     + G  G  R+   M L  EM  +G   D + YN LI      
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 60  RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI--- 116
            D    L  AL   Q+M     C P+IVT + LL        +     +FK + +S    
Sbjct: 444 GD----LNAALDLLQEMISSGLC-PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDL 498

Query: 117 --------LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
                   + PD+ TYN ++      G   E E +   M      PD IT++ +ID   K
Sbjct: 499 DASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCK 558

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
           +   D+  Q+F S+      P + TF ++I  Y KA        +F +M       + IT
Sbjct: 559 QSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAIT 618

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           Y  +I  +    N++ A +IF E+   G      T+  ML
Sbjct: 619 YITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 6/162 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+ +  +G+   A  L+ EM + G  PD   Y+++I        K   L +A
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLC----KQSRLDEA 565

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F  M G +   PN+VT+  L+    +A  VD    LF E+    +  +  TY  ++ 
Sbjct: 566 TQMFDSM-GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITF-NLLIDSYGKRQ 170
            + K G I     +   M S+   PD IT  N+L   + K +
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEE 666


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 155/353 (43%), Gaps = 32/353 (9%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M++    I +  IYS +I  + K G+   A  LF+EM+  G  PD   YN++I       
Sbjct: 245 MEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFC--- 301

Query: 61  DKAKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
             +   + A    Q+M  +ER   P++VTYN L+ A  +     +   L+ E+    + P
Sbjct: 302 -SSGRWSDAEQLLQEM--LERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIP 358

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY-GKRQAFDKMEQV 178
           +  TY+ ++D + K   +   E +   M +  C P++ITFN LID Y G ++  D ME  
Sbjct: 359 NTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGME-- 416

Query: 179 FKSLMHSKEKPTL----PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
              L+H   +  L     T+N++I  +        A  + Q+M +    P  +T  C   
Sbjct: 417 ---LLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVT--CDTL 471

Query: 235 MYGYCDN--VSRAREIFDELSKLGKDM-----------KVSTLNAMLEAYCMNGLPTEAD 281
           + G CDN  +  A E+F  + K  KD+            V T N ++      G   EA+
Sbjct: 472 LDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 531

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            L+E   + G+ PD+ TY  +     K +  +   ++   M      PN   F
Sbjct: 532 ELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 151/329 (45%), Gaps = 17/329 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L+  + ++G+   A+ L   M   G +P    Y  ++       D   AL       
Sbjct: 187 FTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL----NLL 242

Query: 74  QKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           +KM+ +    PN+V Y+ ++ + C   R+ D  N LF E+ E  + PD++TYN ++  + 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQN-LFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
            +G   + E +L  M   +  PD++T+N LI+++ K   F + E+++  ++     P   
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T++SMI  + K      AE++F  M     +P+ IT+  +I  Y     +    E+  E+
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY-------KA 305
           ++ G     +T N ++  + + G    A  L +   + G+ PD  T   L        K 
Sbjct: 422 TETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKL 481

Query: 306 YTKANMKELVQKLLKRMEQ----NGIVPN 330
                M +++QK  K ++     NG+ P+
Sbjct: 482 KDALEMFKVMQKSKKDLDASHPFNGVEPD 510



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 147/343 (42%), Gaps = 26/343 (7%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R    D   Y+ LI    K+G+   A  L+ EM   G  P+   Y+++I      +++ 
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK-QNRL 376

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            A A+ + Y    KG   C PN++T+N L+     A+ +D    L  E+ E+ L  D  T
Sbjct: 377 DA-AEHMFYLMATKG---CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTT 432

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++  +   G +     +L  M S+   PDI+T + L+D            ++FK + 
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQ 492

Query: 184 HSKE-----------KPTLPTFNSMI---INYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
            SK+           +P + T+N +I   IN GK     +AE ++++M      P  ITY
Sbjct: 493 KSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFL---EAEELYEEMPHRGIVPDTITY 549

Query: 230 ECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
             +I   G C    +  A ++FD +        V T   ++  YC  G   +   LF   
Sbjct: 550 SSMID--GLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              G+  ++ TY  L   + K         + + M  +G+ P+
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 143/314 (45%), Gaps = 8/314 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME-RCKPNIVT 88
           A+ LFS+M  S  RP PSV +      +  R +   L  +L  +QKM+  + RC  +I +
Sbjct: 63  AIDLFSDMLRS--RPLPSVVDFCKLMGVVVRMERPDLVISL--YQKMERKQIRC--DIYS 116

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           + IL++       +    + F ++ +  L PD+ T+N ++        + E  ++  +M 
Sbjct: 117 FTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMF 176

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
              C+P+++TF  L++   +     +   +   +M    +PT  T+ +++    K     
Sbjct: 177 ETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTV 236

Query: 209 KAEYVFQKMTAMKYT-PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            A  + +KM  + +  P+ + Y  II         S A+ +F E+ + G    + T N+M
Sbjct: 237 SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +  +C +G  ++A+ L +      ++PD  TY  L  A+ K       ++L   M   GI
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGI 356

Query: 328 VPNKRFFLEALETF 341
           +PN   +   ++ F
Sbjct: 357 IPNTITYSSMIDGF 370



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 113/280 (40%), Gaps = 22/280 (7%)

Query: 6   WYIADTGIYSKLIA----VMGKKGQTRL--AMWLFSEMRNSGCRPDPSVYNALITAHLHT 59
           + +A  G    LI     + G  G  R+   M L  EM  +G   D + YN LI      
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 60  RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI--- 116
            D    L  AL   Q+M     C P+IVT + LL        +     +FK + +S    
Sbjct: 444 GD----LNAALDLLQEMISSGLC-PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDL 498

Query: 117 --------LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
                   + PD+ TYN ++      G   E E +   M      PD IT++ +ID   K
Sbjct: 499 DASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCK 558

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
           +   D+  Q+F S+      P + TF ++I  Y KA        +F +M       + IT
Sbjct: 559 QSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAIT 618

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           Y  +I  +    N++ A +IF E+   G      T+  ML
Sbjct: 619 YITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 6/162 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+ +  +G+   A  L+ EM + G  PD   Y+++I        K   L +A
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLC----KQSRLDEA 565

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F  M G +   PN+VT+  L+    +A  VD    LF E+    +  +  TY  ++ 
Sbjct: 566 TQMFDSM-GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITF-NLLIDSYGKRQ 170
            + K G I     +   M S+   PD IT  N+L   + K +
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEE 666


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 148/322 (45%), Gaps = 5/322 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I+   K  +   A  + + M+  G  PD   YN +I +  + R     L  A
Sbjct: 136 DVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRR----KLGLA 191

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L    ++  ++ C P ++TY IL+ A      +++   L +E+    L PD+YTYN ++ 
Sbjct: 192 LKVLDQLL-LDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIR 250

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K GM++    +++ + S  CKPD+I++N+L+ ++  +  +D+ E++   +     +P
Sbjct: 251 GMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEP 310

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T++ +I +  +     +A  V + M   + TP   +Y+ +I+       +  A  I 
Sbjct: 311 NKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIM 370

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D +   G    +   N +L A C NG   +A  +F     MG  P+ S+Y  +  A    
Sbjct: 371 DYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSC 430

Query: 310 NMKELVQKLLKRMEQNGIVPNK 331
             +     ++  M   G+ P++
Sbjct: 431 GDRSRALGMVPAMISKGVDPDE 452



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 145/323 (44%), Gaps = 13/323 (4%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DK 62
           R  + D   Y+ +I  M K+G    A  L + + + GC+PD   YN L+ A L+    D+
Sbjct: 236 RGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDE 295

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            + L   +  F +      C+PN VTY+IL+ +  +   +D+  ++ K + E  L PD Y
Sbjct: 296 GEKLVAEM--FSR-----GCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTY 348

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++ A  K G +     ++  M SN C PDI+ +N ++ +  K    ++  ++F  L
Sbjct: 349 SYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKL 408

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 P + ++N+MI        + +A  +   M +    P  ITY  +I+       V
Sbjct: 409 RGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLV 468

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A  + D++ + G    V + N +L   C      +A  +F      G  P+ +TY LL
Sbjct: 469 EEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILL 528

Query: 303 YKAYTKANMK----ELVQKLLKR 321
            +    A  +    EL   L  R
Sbjct: 529 IEGIGFAGWRTEAMELANSLFSR 551



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 141/328 (42%), Gaps = 9/328 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALG 71
           Y+ LI     +G    AM L  EM   G  PD   YNA+I         ++A  L  +L 
Sbjct: 210 YTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSL- 268

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
                KG   CKP++++YNILLRA       D+   L  E+      P+  TY+ ++ + 
Sbjct: 269 ---TSKG---CKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSL 322

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G I E  SVL  M   +  PD  +++ LI +  K    D    +   ++ +   P +
Sbjct: 323 CRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDI 382

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             +N+++    K     +A  +F K+  M   P+  +Y  +I+    C + SRA  +   
Sbjct: 383 VNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPA 442

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G D    T N+++   C +GL  EA  L ++    G  P   +Y ++     K   
Sbjct: 443 MISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRR 502

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALE 339
            +    +   M + G  PN+  ++  +E
Sbjct: 503 IDDAIGMFAEMIEKGCRPNETTYILLIE 530



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 113/249 (45%), Gaps = 5/249 (2%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+++    L++     +N+++ + +  E+ ES   PD++ YN V+  + K   I+    V
Sbjct: 101 PDVILCTKLIKGFFNFKNIEKASRVM-EILESHTEPDVFAYNAVISGFCKVNRIEAATQV 159

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L+RMK+    PDI+T+N++I S   R+      +V   L+     PT+ T+  +I     
Sbjct: 160 LNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIV 219

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKV 261
                +A  + ++M A    P   TY  II   G C    V RA E+   L+  G    V
Sbjct: 220 EGGINEAMKLLEEMLARGLLPDMYTYNAIIR--GMCKEGMVERAAELITSLTSKGCKPDV 277

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            + N +L A+   G   E + L     + G  P+  TY +L  +  +    +    +LK 
Sbjct: 278 ISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKV 337

Query: 322 MEQNGIVPN 330
           M +  + P+
Sbjct: 338 MIEKELTPD 346



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/315 (18%), Positives = 132/315 (41%), Gaps = 6/315 (1%)

Query: 16  KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQK 75
           KL+    K G+   +++    + N G  PD  +   LI    + ++  KA ++ +   + 
Sbjct: 73  KLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKA-SRVMEILES 131

Query: 76  MKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG 135
                  +P++  YN ++    +   ++    +   +      PDI TYN ++ +     
Sbjct: 132 -----HTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRR 186

Query: 136 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195
            +     VL ++  + C P +IT+ +LI++       ++  ++ + ++     P + T+N
Sbjct: 187 KLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYN 246

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
           ++I    K  +  +A  +   +T+    P  I+Y  ++  +          ++  E+   
Sbjct: 247 AIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSR 306

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
           G +    T + ++ + C  G   EA  + +      +TPD+ +Y  L  A  K    +L 
Sbjct: 307 GCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLA 366

Query: 316 QKLLKRMEQNGIVPN 330
             ++  M  NG +P+
Sbjct: 367 IGIMDYMISNGCLPD 381



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 1/213 (0%)

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD+     ++  +     I++   V+  ++S+  +PD+  +N +I  + K    +   QV
Sbjct: 101 PDVILCTKLIKGFFNFKNIEKASRVMEILESHT-EPDVFAYNAVISGFCKVNRIEAATQV 159

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
              +      P + T+N MI +    R  G A  V  ++      P+ ITY  +I     
Sbjct: 160 LNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIV 219

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              ++ A ++ +E+   G    + T NA++   C  G+   A  L  +  + G  PD  +
Sbjct: 220 EGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVIS 279

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           Y +L +A+      +  +KL+  M   G  PNK
Sbjct: 280 YNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNK 312


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 155/353 (43%), Gaps = 32/353 (9%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M++    I +  IYS +I  + K G+   A  LF+EM+  G  PD   YN++I       
Sbjct: 245 MEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFC--- 301

Query: 61  DKAKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
             +   + A    Q+M  +ER   P++VTYN L+ A  +     +   L+ E+    + P
Sbjct: 302 -SSGRWSDAEQLLQEM--LERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIP 358

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY-GKRQAFDKMEQV 178
           +  TY+ ++D + K   +   E +   M +  C P++ITFN LID Y G ++  D ME  
Sbjct: 359 NTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGME-- 416

Query: 179 FKSLMHSKEKPTL----PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
              L+H   +  L     T+N++I  +        A  + Q+M +    P  +T  C   
Sbjct: 417 ---LLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVT--CDTL 471

Query: 235 MYGYCDN--VSRAREIFDELSKLGKDM-----------KVSTLNAMLEAYCMNGLPTEAD 281
           + G CDN  +  A E+F  + K  KD+            V T N ++      G   EA+
Sbjct: 472 LDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 531

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            L+E   + G+ PD+ TY  +     K +  +   ++   M      PN   F
Sbjct: 532 ELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 151/329 (45%), Gaps = 17/329 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L+  + ++G+   A+ L   M   G +P    Y  ++       D   AL       
Sbjct: 187 FTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL----NLL 242

Query: 74  QKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           +KM+ +    PN+V Y+ ++ + C   R+ D  N LF E+ E  + PD++TYN ++  + 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQN-LFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
            +G   + E +L  M   +  PD++T+N LI+++ K   F + E+++  ++     P   
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T++SMI  + K      AE++F  M     +P+ IT+  +I  Y     +    E+  E+
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY-------KA 305
           ++ G     +T N ++  + + G    A  L +   + G+ PD  T   L        K 
Sbjct: 422 TETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKL 481

Query: 306 YTKANMKELVQKLLKRMEQ----NGIVPN 330
                M +++QK  K ++     NG+ P+
Sbjct: 482 KDALEMFKVMQKSKKDLDASHPFNGVEPD 510



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 147/343 (42%), Gaps = 26/343 (7%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R    D   Y+ LI    K+G+   A  L+ EM   G  P+   Y+++I      +++ 
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK-QNRL 376

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            A A+ + Y    KG   C PN++T+N L+     A+ +D    L  E+ E+ L  D  T
Sbjct: 377 DA-AEHMFYLMATKG---CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTT 432

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++  +   G +     +L  M S+   PDI+T + L+D            ++FK + 
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQ 492

Query: 184 HSKE-----------KPTLPTFNSMI---INYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
            SK+           +P + T+N +I   IN GK     +AE ++++M      P  ITY
Sbjct: 493 KSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFL---EAEELYEEMPHRGIVPDTITY 549

Query: 230 ECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
             +I   G C    +  A ++FD +        V T   ++  YC  G   +   LF   
Sbjct: 550 SSMID--GLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              G+  ++ TY  L   + K         + + M  +G+ P+
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 143/314 (45%), Gaps = 8/314 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME-RCKPNIVT 88
           A+ LFS+M  S  RP PSV +      +  R +   L  +L  +QKM+  + RC  +I +
Sbjct: 63  AIDLFSDMLRS--RPLPSVVDFCKLMGVVVRMERPDLVISL--YQKMERKQIRC--DIYS 116

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           +NIL++       +    + F ++ +  L PD+ T+  ++        + E  ++  +M 
Sbjct: 117 FNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMF 176

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
              C+P+++TF  L++   +     +   +   +M    +PT  T+ +++    K     
Sbjct: 177 ETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTV 236

Query: 209 KAEYVFQKMTAMKYT-PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            A  + +KM  + +  P+ + Y  II         S A+ +F E+ + G    + T N+M
Sbjct: 237 SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +  +C +G  ++A+ L +      ++PD  TY  L  A+ K       ++L   M   GI
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGI 356

Query: 328 VPNKRFFLEALETF 341
           +PN   +   ++ F
Sbjct: 357 IPNTITYSSMIDGF 370



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 113/280 (40%), Gaps = 22/280 (7%)

Query: 6   WYIADTGIYSKLIA----VMGKKGQTRL--AMWLFSEMRNSGCRPDPSVYNALITAHLHT 59
           + +A  G    LI     + G  G  R+   M L  EM  +G   D + YN LI      
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 60  RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI--- 116
            D    L  AL   Q+M     C P+IVT + LL        +     +FK + +S    
Sbjct: 444 GD----LNAALDLLQEMISSGLC-PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDL 498

Query: 117 --------LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
                   + PD+ TYN ++      G   E E +   M      PD IT++ +ID   K
Sbjct: 499 DASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCK 558

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
           +   D+  Q+F S+      P + TF ++I  Y KA        +F +M       + IT
Sbjct: 559 QSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAIT 618

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           Y  +I  +    N++ A +IF E+   G      T+  ML
Sbjct: 619 YITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 6/162 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+ +  +G+   A  L+ EM + G  PD   Y+++I        K   L +A
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLC----KQSRLDEA 565

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F  M G +   PN+VT+  L+    +A  VD    LF E+    +  +  TY  ++ 
Sbjct: 566 TQMFDSM-GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITF-NLLIDSYGKRQ 170
            + K G I     +   M S+   PD IT  N+L   + K +
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEE 666


>gi|410110097|gb|AFV61128.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           rugosa]
          Length = 348

 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 133/273 (48%), Gaps = 6/273 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ +FS ++ SG  PD   YNA+I        KAK   +A     +MK      PN  +Y
Sbjct: 6   AISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFREARSLIGEMKA-AGVMPNTXSY 60

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           + LL    + +   +  ++F E+ E     D+ T N ++D YG+ GM KE + +   M+ 
Sbjct: 61  STLLTMYVENKKFLEALSVFXEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 120

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
              +P+++++N L+  YG  + F +   +F+ +     +  + T+NSM++ YGK     K
Sbjct: 121 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 180

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  + Q+M +    P+ ITY  II+++G    + RA  +F +L   G ++       M+ 
Sbjct: 181 ANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIV 240

Query: 270 AYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKL 301
           AY   GL   A  LL E      +  D++ + L
Sbjct: 241 AYERAGLVAHAKRLLHELKRPDNIPRDTAIHIL 273



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 129/263 (49%), Gaps = 1/263 (0%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +KA+  F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  +Y+ 
Sbjct: 4   SKAISIFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYST 62

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y +N    E  SV   M+  +C  D+ T N++ID YG+     + +++F  +    
Sbjct: 63  LLTMYVENKKFLEALSVFXEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG      +A 
Sbjct: 123 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 182

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G +    T + ++  +   G    A +LF+   + GV  D   ++ +  AY
Sbjct: 183 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 242

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            +A +    ++LL  +++   +P
Sbjct: 243 ERAGLVAHAKRLLHELKRPDNIP 265



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 147/331 (44%), Gaps = 15/331 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L  EM+ +G  P+   Y+ L+T ++     
Sbjct: 14  KRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTMYVEN--- 70

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   +AL  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ 
Sbjct: 71  -KKFLEALSVFXEMREI-KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 128

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++  YG   +  E   +   M+    + +++T+N ++  YGK    +K   + + +
Sbjct: 129 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 188

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P   T++++I  +GK     +A  +FQK+ +       I ++ +I  Y     V
Sbjct: 189 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLV 248

Query: 243 SRAREIFDELSK---LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           + A+ +  EL +   + +D  +  L          G   EA  +F  + + G   D + +
Sbjct: 249 AHAKRLLHELKRPDNIPRDTAIHILAGA-------GRIEEATYVFRQAIDAGEVKDITVF 301

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + +    +K      V ++  +M   G  P+
Sbjct: 302 ERMIHLLSKYKKYSNVVEVFDKMRGLGYFPD 332



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 76/159 (47%)

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
           + K   +F  L  S   P L  +N+MI  +GKA+L  +A  +  +M A    P+  +Y  
Sbjct: 3   YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYST 62

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           ++TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF     MG
Sbjct: 63  LLTMYVENKKFLEALSVFXEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 123 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 161



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 86/189 (45%)

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           S+ SR+K +   PD++ +N +I+ +GK + F +   +   +  +   P   ++++++  Y
Sbjct: 8   SIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTMY 67

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            + +   +A  VF +M  +K      T   +I +YG       A ++F  + K+G +  V
Sbjct: 68  VENKKFLEALSVFXEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 127

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            + N +L  Y    L  EA  LF       +  +  TY  +   Y K    E    L++ 
Sbjct: 128 VSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQE 187

Query: 322 MEQNGIVPN 330
           M+  GI PN
Sbjct: 188 MQSRGIEPN 196



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 74/157 (47%), Gaps = 9/157 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I++ GK G+   A  LF ++R+SG   D  ++  +I A+    ++A  +A A    
Sbjct: 200 YSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY----ERAGLVAHAKRLL 255

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++K     +P+ +  +  +   A A  +++   +F++  ++    DI  +  ++    K
Sbjct: 256 HELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSK 310

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170
                 +  V  +M+     PD     +++++YGK Q
Sbjct: 311 YKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQ 347


>gi|410110139|gb|AFV61149.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           salviifolia]
          Length = 378

 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 130/276 (47%), Gaps = 5/276 (1%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ +FS ++ SG  PD   YNA+I        KAK   +A     +MK      PN  +Y
Sbjct: 7   AISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFREARSLISEMK-TAGVMPNTTSY 61

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           + LL    + +   +  ++F E+ E     D+ T N ++D YG+ GM KE + +   M+ 
Sbjct: 62  STLLSMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 121

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
              +P+++++N L+  YG  + F +   +F+ +     +  + T+NSM++ YGK     K
Sbjct: 122 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 181

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  + Q+M +    P+ ITY  II+++G    + RA  +F +L   G ++       M+ 
Sbjct: 182 ANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIV 241

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           AY   GL   A  L          P  +   +L  A
Sbjct: 242 AYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGA 277



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 130/263 (49%), Gaps = 1/263 (0%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +KA+  F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  +Y+ 
Sbjct: 5   SKAISIFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 63

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +    
Sbjct: 64  LLSMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 123

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG      +A 
Sbjct: 124 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 183

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G +    T + ++  +   G    A +LF+   + GV  D   ++ +  AY
Sbjct: 184 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 243

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            +A +    ++LL  +++   +P
Sbjct: 244 ERAGLVAHAKRLLHELKRPDNIP 266



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 148/360 (41%), Gaps = 42/360 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEM+ +G  P+ + Y+ L++ ++     
Sbjct: 15  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLSMYVEN--- 71

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 72  -KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 130

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 131 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 190

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           S   +P+ IT++ +I  +GK    D+   +F+ L  S  +     F +MI+ Y +A L  
Sbjct: 191 SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVA 250

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++      P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 251 HAKRLLHELK----RPDNIPRDTAIHILAGAGRIEEATYVFRQAVDAGEVKDITVFERMI 306

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
                    +    +F+    +G  PDS    ++  AY K    +    +   M++ G V
Sbjct: 307 HLLSKYKKYSNVXEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVGCV 366



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 75/159 (47%)

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
           + K   +F  L  S   P L  +N+MI  +GKA+L  +A  +  +M      P+  +Y  
Sbjct: 4   YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 63

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           +++MY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF     MG
Sbjct: 64  LLSMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 123

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 124 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 162



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 86/189 (45%)

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           S+ SR+K +   PD++ +N +I+ +GK + F +   +   +  +   P   ++++++  Y
Sbjct: 9   SIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLSMY 68

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            + +   +A  VF +M  +K      T   +I +YG       A ++F  + K+G +  V
Sbjct: 69  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 128

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            + N +L  Y    L  EA  LF       +  +  TY  +   Y K    E    L++ 
Sbjct: 129 VSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQE 188

Query: 322 MEQNGIVPN 330
           M+  GI PN
Sbjct: 189 MQSRGIEPN 197


>gi|357441367|ref|XP_003590961.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480009|gb|AES61212.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 573

 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 152/318 (47%), Gaps = 23/318 (7%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI---TAHLHTRDKAKALAKAL 70
           Y+ L+ ++ K      A+ +  +M   GC PD ++YN+L+   +   + +D A  ++  L
Sbjct: 253 YALLVELVCKHCGASRALEVLEDMAREGCCPDINMYNSLVNFSSKQGNYKDTALVISNLL 312

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
            +     GM+   PN+VTYNIL+ + +     D V+ + K ++E+ ++P + TYN ++++
Sbjct: 313 SH-----GMQ---PNVVTYNILIHSLSLHGYSDVVDDILKIMNETSISPTLVTYNILLNS 364

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             K+G +    S+  +M S  C PDI+T+N L+++  K    D+  Q+  SL  +   P 
Sbjct: 365 LCKSGFLDRSISLYIKMVSENCSPDIVTYNTLLNALCKEGFIDESIQLLHSLSGTNCSPG 424

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREI 248
           L T+N +I    + R    A+ ++ +M      P +IT+  ++  +G C       A EI
Sbjct: 425 LVTYNIVINGLARMRSIKSAKEMYGEMVEKGIDPDYITHRTLV--WGLCQVYQFEEAVEI 482

Query: 249 FDELSKLGKDMKVSTLNAMLEAYC----MNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           F  + ++G+ +K      ++   C    ++      DL+ +        PD   Y  L K
Sbjct: 483 FKVMHRIGQKIKGYAYKCVILGLCEQKKLDSAIQALDLMVKAQ----CKPDGKIYYTLLK 538

Query: 305 AYTKANMKELVQKLLKRM 322
           +     M      L +R+
Sbjct: 539 SVANEGMVNEANDLHQRL 556



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/367 (18%), Positives = 145/367 (39%), Gaps = 32/367 (8%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + DT  ++ +I  + K+G  + A+     M  SGC PD   YN +I       D   A++
Sbjct: 177 VPDTITFNAVIGSLCKRGHLKSALEFLEGMSLSGCLPDAKTYNTIIRCIFDKGDPNLAVS 236

Query: 68  -------------------------------KALGYFQKMKGMERCKPNIVTYNILLRAC 96
                                          +AL   + M   E C P+I  YN L+   
Sbjct: 237 FWKDQLRKGFPPYLITYALLVELVCKHCGASRALEVLEDM-AREGCCPDINMYNSLVNFS 295

Query: 97  AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
           ++  N      +   L    + P++ TYN ++ +   +G    ++ +L  M      P +
Sbjct: 296 SKQGNYKDTALVISNLLSHGMQPNVVTYNILIHSLSLHGYSDVVDDILKIMNETSISPTL 355

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           +T+N+L++S  K    D+   ++  ++     P + T+N+++    K     ++  +   
Sbjct: 356 VTYNILLNSLCKSGFLDRSISLYIKMVSENCSPDIVTYNTLLNALCKEGFIDESIQLLHS 415

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           ++    +P  +TY  +I       ++  A+E++ E+ + G D    T   ++   C    
Sbjct: 416 LSGTNCSPGLVTYNIVINGLARMRSIKSAKEMYGEMVEKGIDPDYITHRTLVWGLCQVYQ 475

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
             EA  +F+  H +G       YK +     +    +   + L  M +    P+ + +  
Sbjct: 476 FEEAVEIFKVMHRIGQKIKGYAYKCVILGLCEQKKLDSAIQALDLMVKAQCKPDGKIYYT 535

Query: 337 ALETFSS 343
            L++ ++
Sbjct: 536 LLKSVAN 542



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/316 (20%), Positives = 128/316 (40%), Gaps = 5/316 (1%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           + LI  + + GQ      + + M  SG  PD   +NA+I +      K   L  AL + +
Sbjct: 149 TNLIRGLIRIGQVDKGCKIMNMMVMSGGVPDTITFNAVIGSLC----KRGHLKSALEFLE 204

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
            M  +  C P+  TYN ++R      + +   + +K+       P + TY  +++   K+
Sbjct: 205 GMS-LSGCLPDAKTYNTIIRCIFDKGDPNLAVSFWKDQLRKGFPPYLITYALLVELVCKH 263

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
                   VL  M    C PDI  +N L++   K+  +     V  +L+    +P + T+
Sbjct: 264 CGASRALEVLEDMAREGCCPDINMYNSLVNFSSKQGNYKDTALVISNLLSHGMQPNVVTY 323

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N +I +          + + + M     +P+ +TY  ++        + R+  ++ ++  
Sbjct: 324 NILIHSLSLHGYSDVVDDILKIMNETSISPTLVTYNILLNSLCKSGFLDRSISLYIKMVS 383

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
                 + T N +L A C  G   E+  L  +      +P   TY ++     +    + 
Sbjct: 384 ENCSPDIVTYNTLLNALCKEGFIDESIQLLHSLSGTNCSPGLVTYNIVINGLARMRSIKS 443

Query: 315 VQKLLKRMEQNGIVPN 330
            +++   M + GI P+
Sbjct: 444 AKEMYGEMVEKGIDPD 459



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 113/277 (40%), Gaps = 39/277 (14%)

Query: 53  ITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL 112
           I   L +R K  A A+ +    +M  +    P+  +   L+R   +   VD+   +   +
Sbjct: 116 ILQSLCSRGKLTAAARLVEVMARMSQI----PHFPSCTNLIRGLIRIGQVDKGCKIMNMM 171

Query: 113 HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 172
             S   PD  T+N V+ +  K G +K     L  M  + C PD  T+N +I     R  F
Sbjct: 172 VMSGGVPDTITFNAVIGSLCKRGHLKSALEFLEGMSLSGCLPDAKTYNTII-----RCIF 226

Query: 173 DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 232
           DK +            P L       +++ K +L+              + P  ITY  +
Sbjct: 227 DKGD------------PNLA------VSFWKDQLR------------KGFPPYLITYALL 256

Query: 233 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV 292
           + +       SRA E+ +++++ G    ++  N+++      G   +  L+  N  + G+
Sbjct: 257 VELVCKHCGASRALEVLEDMAREGCCPDINMYNSLVNFSSKQGNYKDTALVISNLLSHGM 316

Query: 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
            P+  TY +L  + +     ++V  +LK M +  I P
Sbjct: 317 QPNVVTYNILIHSLSLHGYSDVVDDILKIMNETSISP 353



 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 83/208 (39%), Gaps = 40/208 (19%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + K G    ++ L+ +M +  C PD   YN L+ A      K   + +++   
Sbjct: 358 YNILLNSLCKSGFLDRSISLYIKMVSENCSPDIVTYNTLLNALC----KEGFIDESIQLL 413

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG------- 126
             + G   C P +VTYNI++   A+ R++     ++ E+ E  + PD  T+         
Sbjct: 414 HSLSG-TNCSPGLVTYNIVINGLARMRSIKSAKEMYGEMVEKGIDPDYITHRTLVWGLCQ 472

Query: 127 ------------VMDAYGKN-----------GMI--KEMESV---LSRMKSNQCKPDIIT 158
                       VM   G+            G+   K+++S    L  M   QCKPD   
Sbjct: 473 VYQFEEAVEIFKVMHRIGQKIKGYAYKCVILGLCEQKKLDSAIQALDLMVKAQCKPDGKI 532

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +  L+ S       ++   + + L+  K
Sbjct: 533 YYTLLKSVANEGMVNEANDLHQRLIELK 560


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 147/321 (45%), Gaps = 12/321 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D    S  I  + K G+ + A+ +FSE++  G  PD   Y++LI+       K   + 
Sbjct: 521 LPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFC----KQGEVE 576

Query: 68  KALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           KA     +M  KG+    PNI  YN L+    ++ ++ +   LF  + E  L PD  TY+
Sbjct: 577 KAFELHDEMCLKGI---APNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYS 633

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++D Y K+  + E  S+   M S   +P    +N L+    K    +K   +F+ ++  
Sbjct: 634 TMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQK 693

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
               TL +FN++I  Y K+    +A  +FQ+M A +  P  +TY  +I  +     +  A
Sbjct: 694 GFATTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEA 752

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             +F E+ +    +   T  +++  Y   G  +E   LFE     GV PD  TY L+  A
Sbjct: 753 NLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYA 812

Query: 306 YTKANMKELVQKLLKRMEQNG 326
           + K +   LV+    R E  G
Sbjct: 813 HCKED--NLVEAFKLRDEVVG 831



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 154/322 (47%), Gaps = 14/322 (4%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ L+  + K G  + A  LF  M   G  PD   Y+ +I  +     K++ +A+A   
Sbjct: 596 IYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYC----KSENVAEAFSL 651

Query: 73  FQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           F +M  KG++   P+   YN L+  C +  ++++   LF+E+ +   A  + ++N ++D 
Sbjct: 652 FHEMPSKGVQ---PHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTL-SFNTLIDG 707

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           Y K+  I+E   +   M + Q  PD +T+  +ID + K    ++   +FK +        
Sbjct: 708 YCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVD 767

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREI 248
             T+ S++  Y K     +   +F+KM A    P  +TY  +I  Y +C  DN+  A ++
Sbjct: 768 TVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVI--YAHCKEDNLVEAFKL 825

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            DE+   G   K +  + ++ A C     TEA  L +    +G+ P  +    L +++ +
Sbjct: 826 RDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHE 885

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
           A   +   ++ + ++  G+VP+
Sbjct: 886 AGKMDEATRVFEGVKSLGLVPD 907



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 132/306 (43%), Gaps = 15/306 (4%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ L  EM      P    Y A+I    H +D    L+ A    +KM      KPN+V Y
Sbjct: 333 ALELLDEMEKRNLVPSAVSYGAMINGLCHCKD----LSLANKLLEKMT-FSGLKPNVVVY 387

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           + L+   A    +++   L   +  S +APDI+ YN ++    K G ++E  + L  ++ 
Sbjct: 388 STLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQG 447

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
              KPD +TF   I  Y K     +  + F  ++     P  P +  +I  + KA    +
Sbjct: 448 RGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLME 507

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAM 267
           A  +F+ + A+   P   T  C   ++G   N  V  A ++F EL + G    V T +++
Sbjct: 508 ALSIFRHLHALGVLPDVQT--CSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSL 565

Query: 268 LEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           +  +C  G   E +  FE    M   G+ P+   Y  L     K+   +  +KL   M +
Sbjct: 566 ISGFCKQG---EVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPE 622

Query: 325 NGIVPN 330
            G+ P+
Sbjct: 623 KGLEPD 628



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 129/319 (40%), Gaps = 9/319 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  + K G+   A  +   M   GC+P+   +  LI  +    +  +AL       
Sbjct: 282 YNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRAL------- 334

Query: 74  QKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           + +  ME+    P+ V+Y  ++      +++   N L +++  S L P++  Y+ ++  Y
Sbjct: 335 ELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGY 394

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
              G I+E   +L  M  +   PDI  +N +I    K    ++       +     KP  
Sbjct: 395 ASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDA 454

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            TF + I+ Y K     +A   F +M      P+   Y  +I  +    N+  A  IF  
Sbjct: 455 VTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRH 514

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           L  LG    V T +A +     NG   EA  +F      G+ PD  TY  L   + K   
Sbjct: 515 LHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGE 574

Query: 312 KELVQKLLKRMEQNGIVPN 330
            E   +L   M   GI PN
Sbjct: 575 VEKAFELHDEMCLKGIAPN 593



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 137/324 (42%), Gaps = 11/324 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +YS LI     +G+   A  L   M  SG  PD   YNA+I+       KA  + +A  Y
Sbjct: 386 VYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISC----LSKAGKMEEASTY 441

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +++G    KP+ VT+   +   ++   + +    F E+ +  L P+   Y  +++ + 
Sbjct: 442 LLEIQG-RGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHF 500

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G + E  S+   + +    PD+ T +  I    K     +  +VF  L      P + 
Sbjct: 501 KAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVF 560

Query: 193 TFNSMIINYGKARLQGKAEYVFQ---KMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           T++S+I  + K   QG+ E  F+   +M      P+   Y  ++       ++ RAR++F
Sbjct: 561 TYSSLISGFCK---QGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLF 617

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D + + G +    T + M++ YC +    EA  LF    + GV P S  Y  L     K 
Sbjct: 618 DGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKE 677

Query: 310 NMKELVQKLLKRMEQNGIVPNKRF 333
              E    L + M Q G      F
Sbjct: 678 GDMEKAMNLFREMLQKGFATTLSF 701



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 113/251 (45%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           PN  TY I+     +A+ +++    F+E+ ++ L PD    + ++D + + G I E+  +
Sbjct: 207 PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRI 266

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
              M S     ++IT+N+LI    K    +K  ++ K ++    KP   TF  +I  Y +
Sbjct: 267 KDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCR 326

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
               G+A  +  +M      PS ++Y  +I    +C ++S A ++ ++++  G    V  
Sbjct: 327 EHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVV 386

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            + ++  Y   G   EA  L +     GV PD   Y  +    +KA   E     L  ++
Sbjct: 387 YSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQ 446

Query: 324 QNGIVPNKRFF 334
             G+ P+   F
Sbjct: 447 GRGLKPDAVTF 457



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/331 (19%), Positives = 138/331 (41%), Gaps = 13/331 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++  + +T  Y+ + A + +  +   A   F EM+ +G +PD +  +ALI   +   D  
Sbjct: 202 EKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDID 261

Query: 64  KALAKALGYFQKMKG-MERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           + L        ++K  M  C    N++TYN+L+    +   +++   + K +      P+
Sbjct: 262 EVL--------RIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPN 313

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             T+  +++ Y +   +     +L  M+     P  +++  +I+     +      ++ +
Sbjct: 314 SRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLE 373

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +  S  KP +  ++++I+ Y       +A  +   M+     P    Y  II+      
Sbjct: 374 KMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAG 433

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            +  A     E+   G      T  A +  Y   G  TEA   F+   + G+ P++  Y 
Sbjct: 434 KMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYT 493

Query: 301 LLYKAYTKA-NMKELVQKLLKRMEQNGIVPN 330
           +L   + KA N+ E +  + + +   G++P+
Sbjct: 494 VLINGHFKAGNLMEALS-IFRHLHALGVLPD 523



 Score = 39.3 bits (90), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 71/185 (38%), Gaps = 17/185 (9%)

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           + F++LIDSY +    D+   VF    +     +L   NS+                 + 
Sbjct: 157 VVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSL-----------------RS 199

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M      P+  TY  I         ++ A+  F+E+ K G     +  +A+++ +   G 
Sbjct: 200 MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 259

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
             E   + +   + G+  +  TY +L     K    E   ++LK M   G  PN R F  
Sbjct: 260 IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 319

Query: 337 ALETF 341
            +E +
Sbjct: 320 LIEGY 324


>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
          Length = 586

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 141/319 (44%), Gaps = 5/319 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R Y  D   ++ +I  + + GQ + A+ L   M   GC PD   +N ++     T + 
Sbjct: 246 QDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNE- 304

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              +++     ++++    C PN+VT+  ++    +A  ++   A++ ++  S + P+  
Sbjct: 305 ---VSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTV 361

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN +++ YGK G +     V  +M   +C PD++TF+ LID Y +    D   +++  +
Sbjct: 362 TYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDM 421

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSFITYECIITMYGYCDN 241
              + +P + TF+ +I +  K     +A  +  ++       P    Y  +I +   C  
Sbjct: 422 AQHRIQPNVYTFSIIIHSLCKQNRSDEAICLLNELNLRPDIAPQAFIYNPVIDVLCKCGK 481

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           V  A  I   + + G      T   ++  YCM    +EA + F      G +PDS T   
Sbjct: 482 VDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNC 541

Query: 302 LYKAYTKANMKELVQKLLK 320
                 KA M   V  +++
Sbjct: 542 FISCLLKAGMPNEVDHVMR 560



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 141/312 (45%), Gaps = 12/312 (3%)

Query: 16  KLIAVMGKKGQTRLAMWLFSEMRNS-GCRPDPSVYNALITAHLHTR--DKAKALAKALGY 72
           ++I V+ + G+   A+ LF +M    G  PD    + L+++       D +  L      
Sbjct: 152 QIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASE 211

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE-LHESILAPDIYTYNGVMDAY 131
           F        C+     YN L+ +      V  V ALF+  + + + +PD++++N V+   
Sbjct: 212 FG-------CRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGV 264

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPT 190
            + G +++   ++ RM    C PD +T N+++D   +     +  +V + L       P 
Sbjct: 265 CRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPN 324

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           + TF S+I  Y KA     A  V+  M A    P+ +TY  +I  YG   ++  A E++ 
Sbjct: 325 VVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQ 384

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           ++++L     V T +++++ YC  G   +A  ++ +     + P+  T+ ++  +  K N
Sbjct: 385 QMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQN 444

Query: 311 MKELVQKLLKRM 322
             +    LL  +
Sbjct: 445 RSDEAICLLNEL 456


>gi|410110115|gb|AFV61137.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           hederifolia]
          Length = 364

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 130/276 (47%), Gaps = 5/276 (1%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ +FS ++ SG  PD   YNA+I        KAK   +A     +MK      PN  +Y
Sbjct: 6   AISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFREARSLISEMK-TAGVMPNTTSY 60

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           + LL    + +   +  ++F E+ E     D+ T N ++D YG+ GM KE + +   M+ 
Sbjct: 61  STLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 120

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
              +P+++++N L+  YG  + F +   +F+ +     +  + T+NSM++ YGK     K
Sbjct: 121 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKSIEQNVVTYNSMMMIYGKTLEHEK 180

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  + Q+M +    P+ ITY  II+++G    + RA  +F +L   G ++       M+ 
Sbjct: 181 ANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIV 240

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           AY   GL   A  L          P  +   +L  A
Sbjct: 241 AYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGA 276



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 130/263 (49%), Gaps = 1/263 (0%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +KA+  F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  +Y+ 
Sbjct: 4   SKAISIFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 62

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +    
Sbjct: 63  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG      +A 
Sbjct: 123 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKSIEQNVVTYNSMMMIYGKTLEHEKAN 182

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G +    T + ++  +   G    A +LF+   + GV  D   ++ +  AY
Sbjct: 183 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 242

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            +A +    ++LL  +++   +P
Sbjct: 243 ERAGLVAHAKRLLHELKRPDNIP 265



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 141/340 (41%), Gaps = 42/340 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEM+ +G  P+ + Y+ L+T ++     
Sbjct: 14  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVEN--- 70

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 71  -KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 129

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 130 YNTLLRVYGDAELFGEAIHLFRLMQRKSIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 189

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           S   +P+ IT++ +I  +GK    D+   +F+ L  S  +     F +MI+ Y +A L  
Sbjct: 190 SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVA 249

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++      P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 250 HAKRLLHELK----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMI 305

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
                    +    +F+    +G  PDS    ++  AY K
Sbjct: 306 HLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGK 345



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 75/159 (47%)

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
           + K   +F  L  S   P L  +N+MI  +GKA+L  +A  +  +M      P+  +Y  
Sbjct: 3   YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 62

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           ++TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF     MG
Sbjct: 63  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 123 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKSIEQN 161



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 86/189 (45%)

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           S+ SR+K +   PD++ +N +I+ +GK + F +   +   +  +   P   ++++++  Y
Sbjct: 8   SIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMY 67

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            + +   +A  VF +M  +K      T   +I +YG       A ++F  + K+G +  V
Sbjct: 68  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 127

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            + N +L  Y    L  EA  LF       +  +  TY  +   Y K    E    L++ 
Sbjct: 128 VSYNTLLRVYGDAELFGEAIHLFRLMQRKSIEQNVVTYNSMMMIYGKTLEHEKANNLIQE 187

Query: 322 MEQNGIVPN 330
           M+  GI PN
Sbjct: 188 MQSRGIEPN 196


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 159/359 (44%), Gaps = 23/359 (6%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ +I    K GQ   A  L  EM+  G + D  +++ LI        +   + +AL  
Sbjct: 1   MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLC----RKGRIDEALEQ 56

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA-----PDIYTYNGV 127
           F+ M   E C PN++TYN ++    +A  +D+   LF ++ +   A     PD+ +Y+ V
Sbjct: 57  FKSMG--EECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTV 114

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +DA  K   + +      RM++  C P+++T++ LID   K    D++++ +  LM  K 
Sbjct: 115 IDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCK---VDRVDEAYSLLMQLKG 171

Query: 188 KPTLPT---FNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDN 241
           +  +P    +N+++  + +   QGK     + +  MK   +  + I +  ++      D 
Sbjct: 172 EDMVPRAMYYNAVVNGFKR---QGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDE 228

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
             +A + F+ L K GK   V T N  +   C  G   EA  +        VTPD  TY  
Sbjct: 229 QEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSS 288

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRS 360
           +   + KA   +    +  RM  +  +P+   F+  L  FS      ++     D+  +
Sbjct: 289 IIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNA 347



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 144/322 (44%), Gaps = 10/322 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMR-----NSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           Y+ ++  + K  +    + LF +M      + GC PD   Y+ +I A      KA+ + K
Sbjct: 71  YNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALC----KAQRVDK 126

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A  YF++M+ +  C PN+VTY+ L+    +   VD+  +L  +L    + P    YN V+
Sbjct: 127 AYEYFKRMRAV-GCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVV 185

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + + + G   E   +L  MK      +II FN ++ +  K    +K  Q F+ L+ S +K
Sbjct: 186 NGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKK 245

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P + T+N  +    KA    +A  +  +M   K TP  ITY  II  +     + +A ++
Sbjct: 246 PNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDV 305

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F  +          T   +L  +  +    EA  + E+  N G  P   TY +L      
Sbjct: 306 FTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCG 365

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
           A+  E   ++  +M++    P+
Sbjct: 366 ADSVESALEIYHKMKRKKRQPD 387



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 141/351 (40%), Gaps = 65/351 (18%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLHTRDKAKAL- 66
           D   YS +I  + K  +   A   F  MR  GC P+   Y++LI     +   D+A +L 
Sbjct: 107 DVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLL 166

Query: 67  ---------AKALGYFQKMKGMER-CKP-----------------NIVTYNILLRACAQA 99
                     +A+ Y   + G +R  KP                 NI+ +N +L A  + 
Sbjct: 167 MQLKGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKN 226

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
              ++    F+ L +S   P++ TYN  +    K G + E   +L  M  ++  PD+IT+
Sbjct: 227 DEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITY 286

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
           + +ID + K    DK + VF  +M  +  P   TF +++  + + +   +A  V + M  
Sbjct: 287 SSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVN 346

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
             + P   TY  ++      D+V  A EI+ ++ +  +                      
Sbjct: 347 AGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKR---------------------- 384

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                         PD++TY  L +   +A   +  ++ L  ME + +VPN
Sbjct: 385 -------------QPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPN 422



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 142/353 (40%), Gaps = 58/353 (16%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ ++    ++G+    + L   M+  G   +   +NA+    LH   K     KA  +F
Sbjct: 181 YNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAM----LHALWKNDEQEKACQFF 236

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +++    + KPN+VTYN+ +    +A  VD+   +  E+ ES + PD+ TY+ ++D + K
Sbjct: 237 ERLLKSGK-KPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCK 295

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITF---------------------------------- 159
            G + + + V +RM  ++C P  +TF                                  
Sbjct: 296 AGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQT 355

Query: 160 -NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
            N+L+D      + +   +++  +   K +P   T+  +I    +AR   +A+     M 
Sbjct: 356 YNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVME 415

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK-DMKVSTLNAMLEAYCMNGLP 277
           A    P                N +    + + L K G+ D   S L+ ++E  C  G P
Sbjct: 416 ADNVVP----------------NGAICHALVEVLCKQGEVDEACSVLDNVVE-ICKAGEP 458

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            EA  + E     GV PD +TY  + ++    +  +      ++M   G  P 
Sbjct: 459 DEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPG 511


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 155/353 (43%), Gaps = 32/353 (9%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M++    I +  IYS +I  + K G+   A  LF+EM+  G  PD   YN++I       
Sbjct: 245 MEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFC--- 301

Query: 61  DKAKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
             +   + A    Q+M  +ER   P++VTYN L+ A  +     +   L+ E+    + P
Sbjct: 302 -SSGRWSDAEQLLQEM--LERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIP 358

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY-GKRQAFDKMEQV 178
           +  TY+ ++D + K   +   E +   M +  C P++ITFN LID Y G ++  D ME  
Sbjct: 359 NTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGME-- 416

Query: 179 FKSLMHSKEKPTL----PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
              L+H   +  L     T+N++I  +        A  + Q+M +    P  +T  C   
Sbjct: 417 ---LLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVT--CDTL 471

Query: 235 MYGYCDN--VSRAREIFDELSKLGKDM-----------KVSTLNAMLEAYCMNGLPTEAD 281
           + G CDN  +  A E+F  + K  KD+            V T N ++      G   EA+
Sbjct: 472 LDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 531

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            L+E   + G+ PD+ TY  +     K +  +   ++   M      PN   F
Sbjct: 532 ELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 151/329 (45%), Gaps = 17/329 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L+  + ++G+   A+ L   M   G +P    Y  ++       D   AL       
Sbjct: 187 FTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL----NLL 242

Query: 74  QKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           +KM+ +    PN+V Y+ ++ + C   R+ D  N LF E+ E  + PD++TYN ++  + 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQN-LFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
            +G   + E +L  M   +  PD++T+N LI+++ K   F + E+++  ++     P   
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T++SMI  + K      AE++F  M     +P+ IT+  +I  Y     +    E+  E+
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY-------KA 305
           ++ G     +T N ++  + + G    A  L +   + G+ PD  T   L        K 
Sbjct: 422 TETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKL 481

Query: 306 YTKANMKELVQKLLKRMEQ----NGIVPN 330
                M +++QK  K ++     NG+ P+
Sbjct: 482 KDALEMFKVMQKSKKDLDASHPFNGVEPD 510



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 147/343 (42%), Gaps = 26/343 (7%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R    D   Y+ LI    K+G+   A  L+ EM   G  P+   Y+++I      +++ 
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK-QNRL 376

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            A A+ + Y    KG   C PN++T+N L+     A+ +D    L  E+ E+ L  D  T
Sbjct: 377 DA-AEHMFYLMATKG---CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTT 432

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++  +   G +     +L  M S+   PDI+T + L+D            ++FK + 
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQ 492

Query: 184 HSKE-----------KPTLPTFNSMI---INYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
            SK+           +P + T+N +I   IN GK     +AE ++++M      P  ITY
Sbjct: 493 KSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFL---EAEELYEEMPHRGIVPDTITY 549

Query: 230 ECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
             +I   G C    +  A ++FD +        V T   ++  YC  G   +   LF   
Sbjct: 550 SSMID--GLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              G+  ++ TY  L   + K         + + M  +G+ P+
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 143/314 (45%), Gaps = 8/314 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME-RCKPNIVT 88
           A+ LFS+M  S  RP PSV +      +  R +   L  +L  +QKM+  + RC  +I +
Sbjct: 63  AIDLFSDMLRS--RPLPSVVDFCKLMGVVVRMERPDLVISL--YQKMERKQIRC--DIYS 116

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           + IL++       +    + F +L +  L PD+ T+N ++        + E  ++  +M 
Sbjct: 117 FTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMF 176

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
              C+P+++TF  L++   +     +   +   +M    +PT  T+ +++    K     
Sbjct: 177 ETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTV 236

Query: 209 KAEYVFQKMTAMKYT-PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            A  + +KM  + +  P+ + Y  II         S A+ +F E+ + G    + T N+M
Sbjct: 237 SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +  +C +G  ++A+ L +      ++PD  TY  L  A+ K       ++L   M   GI
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGI 356

Query: 328 VPNKRFFLEALETF 341
           +PN   +   ++ F
Sbjct: 357 IPNTITYSSMIDGF 370



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 113/280 (40%), Gaps = 22/280 (7%)

Query: 6   WYIADTGIYSKLIA----VMGKKGQTRL--AMWLFSEMRNSGCRPDPSVYNALITAHLHT 59
           + +A  G    LI     + G  G  R+   M L  EM  +G   D + YN LI      
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 60  RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI--- 116
            D    L  AL   Q+M     C P+IVT + LL        +     +FK + +S    
Sbjct: 444 GD----LNAALDLLQEMISSGLC-PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDL 498

Query: 117 --------LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
                   + PD+ TYN ++      G   E E +   M      PD IT++ +ID   K
Sbjct: 499 DASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCK 558

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
           +   D+  Q+F S+      P + TF ++I  Y KA        +F +M       + IT
Sbjct: 559 QSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAIT 618

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           Y  +I  +    N++ A +IF E+   G      T+  ML
Sbjct: 619 YITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 6/162 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+ +  +G+   A  L+ EM + G  PD   Y+++I        K   L +A
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLC----KQSRLDEA 565

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F  M G +   PN+VT+  L+    +A  VD    LF E+    +  +  TY  ++ 
Sbjct: 566 TQMFDSM-GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITF-NLLIDSYGKRQ 170
            + K G I     +   M S+   PD IT  N+L   + K +
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEE 666


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 146/319 (45%), Gaps = 8/319 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D    S  I  + K G+ + A+ +FSE++  G  PD   Y++LI+      +  KA  
Sbjct: 610 LPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAF- 668

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
             L     +KG+    PNI  YN L+    ++ ++ +   LF  + E  L PD  TY+ +
Sbjct: 669 -ELHDEMCLKGI---APNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTM 724

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D Y K+  + E  S+   M S   +P    +N L+    K    +K   +F+ ++    
Sbjct: 725 IDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 784

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
             TL +FN++I  Y K+    +A  +FQ+M A +  P  +TY  +I  +     +  A  
Sbjct: 785 ATTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANL 843

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F E+ +    +   T  +++  Y   G  +E   LFE     GV PD  TY L+  A+ 
Sbjct: 844 LFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHC 903

Query: 308 KANMKELVQKLLKRMEQNG 326
           K +   LV+    R E  G
Sbjct: 904 KED--NLVEAFKLRDEVVG 920



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 154/322 (47%), Gaps = 14/322 (4%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ L+  + K G  + A  LF  M   G  PD   Y+ +I  +     K++ +A+A   
Sbjct: 685 IYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYC----KSENVAEAFSL 740

Query: 73  FQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           F +M  KG++   P+   YN L+  C +  ++++   LF+E+ +   A  + ++N ++D 
Sbjct: 741 FHEMPSKGVQ---PHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTL-SFNTLIDG 796

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           Y K+  I+E   +   M + Q  PD +T+  +ID + K    ++   +FK +        
Sbjct: 797 YCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVD 856

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREI 248
             T+ S++  Y K     +   +F+KM A    P  +TY  +I  Y +C  DN+  A ++
Sbjct: 857 TVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVI--YAHCKEDNLVEAFKL 914

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            DE+   G   K +  + ++ A C     TEA  L +    +G+ P  +    L +++ +
Sbjct: 915 RDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHE 974

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
           A   +   ++ + ++  G+VP+
Sbjct: 975 AGKMDEATRVFEGVKSLGLVPD 996



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 143/325 (44%), Gaps = 5/325 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+  + K G  R A  +  EM   G  P+  +Y+ +I       D  +A+   
Sbjct: 227 DVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVE-- 284

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               ++  G +   PN  TY I+     +A+ +++    F+E+ ++ L PD    + ++D
Sbjct: 285 ---LKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALID 341

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            + + G I E+  +   M S     ++IT+N+LI    K    +K  ++ K ++    KP
Sbjct: 342 GFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKP 401

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              TF  +I  Y +    G+A  +  +M      PS ++Y  +I    +C ++S A ++ 
Sbjct: 402 NSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLL 461

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           ++++  G    V   + ++ AY   G   EA  L +     GV PD   Y  +    +KA
Sbjct: 462 EKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKA 521

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
              E     L  ++  G+ P+   F
Sbjct: 522 GKMEEASTYLLEIQGRGLKPDAVTF 546



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 135/306 (44%), Gaps = 15/306 (4%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ L  EM      P    Y A+I    H +D    L+ A    +KM      KPN+V Y
Sbjct: 422 ALELLDEMEKRNLVPSAVSYGAMINGLCHCKD----LSLANKLLEKMT-FSGLKPNVVVY 476

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           +IL+ A A    +++   L   +  S +APDI+ YN ++    K G ++E  + L  ++ 
Sbjct: 477 SILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQG 536

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
              KPD +TF   I  Y K     +  + F  ++     P  P +  +I  + KA    +
Sbjct: 537 RGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLME 596

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAM 267
           A  +F+++ A+   P   T  C   ++G   N  V  A ++F EL + G    V T +++
Sbjct: 597 ALSIFRRLHALGVLPDVQT--CSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSL 654

Query: 268 LEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           +  +C  G   E +  FE    M   G+ P+   Y  L     K+   +  +KL   M +
Sbjct: 655 ISGFCKQG---EVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPE 711

Query: 325 NGIVPN 330
            G+ P+
Sbjct: 712 KGLEPD 717



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 130/319 (40%), Gaps = 9/319 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  + K G+   A  +   M   GC+P+   +  LI  +    +  +AL       
Sbjct: 371 YNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRAL------- 423

Query: 74  QKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           + +  ME+    P+ V+Y  ++      +++   N L +++  S L P++  Y+ ++ AY
Sbjct: 424 ELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAY 483

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
              G I+E   +L  M  +   PDI  +N +I    K    ++       +     KP  
Sbjct: 484 ASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDA 543

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            TF + I+ Y K     +A   F +M      P+   Y  +I  +    N+  A  IF  
Sbjct: 544 VTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRR 603

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           L  LG    V T +A +     NG   EA  +F      G+ PD  TY  L   + K   
Sbjct: 604 LHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGE 663

Query: 312 KELVQKLLKRMEQNGIVPN 330
            E   +L   M   GI PN
Sbjct: 664 VEKAFELHDEMCLKGIAPN 682



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 138/324 (42%), Gaps = 11/324 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +YS LI     +G+   A  L   M  SG  PD   YNA+I+       KA  + +A  Y
Sbjct: 475 VYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISC----LSKAGKMEEASTY 530

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +++G    KP+ VT+   +   ++   + +    F E+ +  L P+   Y  +++ + 
Sbjct: 531 LLEIQG-RGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHF 589

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G + E  S+  R+ +    PD+ T +  I    K     +  +VF  L      P + 
Sbjct: 590 KAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVF 649

Query: 193 TFNSMIINYGKARLQGKAEYVFQ---KMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           T++S+I  + K   QG+ E  F+   +M      P+   Y  ++       ++ RAR++F
Sbjct: 650 TYSSLISGFCK---QGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLF 706

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D + + G +    T + M++ YC +    EA  LF    + GV P S  Y  L     K 
Sbjct: 707 DGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKE 766

Query: 310 NMKELVQKLLKRMEQNGIVPNKRF 333
              E    L + M Q G      F
Sbjct: 767 GDMEKAMNLFREMLQKGFATTLSF 790



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 64/331 (19%), Positives = 138/331 (41%), Gaps = 13/331 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++  + +T  Y+ + A + +  +   A   F EM+ +G +PD +  +ALI   +   D  
Sbjct: 291 EKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDID 350

Query: 64  KALAKALGYFQKMKG-MERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           + L        ++K  M  C    N++TYN+L+    +   +++   + K +      P+
Sbjct: 351 EVL--------RIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPN 402

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             T+  +++ Y +   +     +L  M+     P  +++  +I+     +      ++ +
Sbjct: 403 SRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLE 462

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +  S  KP +  ++ +I+ Y       +A  +   M+     P    Y  II+      
Sbjct: 463 KMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAG 522

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            +  A     E+   G      T  A +  Y   G  TEA   F+   + G+ P++  Y 
Sbjct: 523 KMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYT 582

Query: 301 LLYKAYTKA-NMKELVQKLLKRMEQNGIVPN 330
           +L   + KA N+ E +  + +R+   G++P+
Sbjct: 583 VLINGHFKAGNLMEALS-IFRRLHALGVLPD 612



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/246 (19%), Positives = 108/246 (43%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           +++  N LL+   +   ++    ++  + ++ +  D+YTY  ++ A  K G ++  + VL
Sbjct: 192 SLIRCNSLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVL 251

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             M      P+   ++L+I+   +    D+  ++ +S+      P   T+  +     +A
Sbjct: 252 IEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRA 311

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
           +   +A+  F++M      P +     +I  +    ++     I D +   G  + + T 
Sbjct: 312 KRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITY 371

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N ++   C  G   +A  + +    +G  P+S T+ LL + Y + +      +LL  ME+
Sbjct: 372 NVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEK 431

Query: 325 NGIVPN 330
             +VP+
Sbjct: 432 RNLVPS 437



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/174 (20%), Positives = 72/174 (41%)

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           + F++LIDSY +    D+   VF    +     +L   NS++ +  K  +      V+  
Sbjct: 159 VVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNG 218

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M   K      TY  ++       ++  A+ +  E+ + G +      + ++E  C  G 
Sbjct: 219 MLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGD 278

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             EA  L  +    G+ P++ TY ++     +A      +   + M++ G+ P+
Sbjct: 279 IDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPD 332


>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
          Length = 1024

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 154/328 (46%), Gaps = 17/328 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNS-GCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           ++ L++++ K+G+T +A  LF EM ++ G  PD   +N LI            + +   +
Sbjct: 274 FNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMN----SMVDEGFWF 329

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL--HESILAPDIYTYNGVMDA 130
           F++M    +C P++VTYN L+    +A  V   + + K +      L+P++ TY  ++  
Sbjct: 330 FKEMSRF-KCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRG 388

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KP 189
           Y     + E  S+L+ M S   KP+ IT+N LI    + Q  DK++++ + ++      P
Sbjct: 389 YCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIP 448

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T N++I  +       +A  VF+KM+ ++  P   TY  ++       +  RA E F
Sbjct: 449 DTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFF 508

Query: 250 DELSK-------LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           DEL++       +G    V+  N M E  C NG   +A+ +F      G T D  +YK L
Sbjct: 509 DELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRG-TQDPPSYKTL 567

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
              + +    E    LL  M +   VP+
Sbjct: 568 ILGHCREGTPEAGFDLLVLMLRRDFVPD 595



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 70/333 (21%), Positives = 129/333 (38%), Gaps = 12/333 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  ++ LI             W F EM    C PD   YN L+           A    
Sbjct: 306 DTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVV 365

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            G  +K   +    PN+VTY  L+R     +++ +  +L  E+    L P+  TYN ++ 
Sbjct: 366 KGMVKKSPNLS---PNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQ 422

Query: 130 AYGKNGMIKEMESVLSRMKSNQC-KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
              +   + +++ +L  M  +    PD  T N LI ++      ++   VF+ +   + +
Sbjct: 423 GLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQ 482

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG-----YCDN-- 241
           P   T++ ++ +  +     +AE  F ++   +     +  + ++  Y       C N  
Sbjct: 483 PDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGK 542

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
             +A  +F +L K G      +   ++  +C  G P     L          PD+ TY L
Sbjct: 543 TKKAERVFRQLMKRGTQ-DPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGL 601

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           +     K     L  K L++M ++  +P    F
Sbjct: 602 MIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIF 634



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 77/201 (38%), Gaps = 46/201 (22%)

Query: 39  NSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
           + G  PD    N LI AH  T  K   L +A   F+KM  + R +P+  TY++L+R+  Q
Sbjct: 443 DGGFIPDTCTLNTLIKAHC-TMGK---LEEAFSVFEKMSEL-RVQPDSATYSVLVRSLCQ 497

Query: 99  ARNVDQVNALFKEL-------HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS-- 149
             +  +    F EL       H+    P +  YN + +    NG  K+ E V  ++    
Sbjct: 498 RGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRG 557

Query: 150 ------------NQCK--------------------PDIITFNLLIDSYGKRQAFDKMEQ 177
                         C+                    PD  T+ L+ID   K+       +
Sbjct: 558 TQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHK 617

Query: 178 VFKSLMHSKEKPTLPTFNSMI 198
             + ++ S   PT   F+S++
Sbjct: 618 SLEKMLKSSHLPTTAIFHSIL 638


>gi|410110073|gb|AFV61116.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           virgata]
          Length = 424

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 136/297 (45%), Gaps = 5/297 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YNA+I        KAK   +
Sbjct: 49  GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFRE 104

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +M+      PN  +Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 105 ARSLISEMR-TAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMI 163

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +      
Sbjct: 164 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIV 223

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSM++ YGK     KA  + Q+M      P+ ITY  II+++G    + RA  +
Sbjct: 224 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAML 283

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           F +L   G ++       M  AY   GL   A  L     +    P  +   +L  A
Sbjct: 284 FQKLRSSGVEIDQVLYQTMXVAYERAGLVAHAKRLLHELKSPDNIPRDTAIHILAGA 340



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 138/295 (46%), Gaps = 5/295 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF EMR     PD   Y+ LIT H     K      AL + QKM+  +R   ++V Y+ L
Sbjct: 3   LFDEMRQRALSPDRYTYSTLIT-HF---GKEGLFDAALSWLQKME-QDRVPGDLVLYSNL 57

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  S++S M++   
Sbjct: 58  IELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGV 117

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+  +  +A+ 
Sbjct: 118 MPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 177

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + +      V T N+M+  Y 
Sbjct: 178 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYG 237

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
                 +A+ L +   N G+ P+S TY  +   + K    +    L +++  +G+
Sbjct: 238 KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGV 292



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 153/327 (46%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 8   RQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 67

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  
Sbjct: 68  SKAIS----IFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTA 122

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +
Sbjct: 123 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 182

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG     
Sbjct: 183 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEH 242

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + GV  D   Y+ +
Sbjct: 243 EKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTM 302

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  ++    +P
Sbjct: 303 XVAYERAGLVAHAKRLLHELKSPDNIP 329



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 113/225 (50%)

Query: 106 NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
           + LF E+ +  L+PD YTY+ ++  +GK G+     S L +M+ ++   D++ ++ LI+ 
Sbjct: 1   HGLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIEL 60

Query: 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
             K   + K   +F  L  S   P L  +N+MI  +GKA+L  +A  +  +M      P+
Sbjct: 61  SRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPN 120

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
             +Y  ++TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF 
Sbjct: 121 TASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFW 180

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
               MG+ P+  +Y  L + Y  A +      L + M++  IV N
Sbjct: 181 GMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQN 225



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 142/340 (41%), Gaps = 42/340 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEMR +G  P+ + Y+ L+T ++     
Sbjct: 78  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVEN--- 134

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 135 -KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 193

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 194 YNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 253

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           +   +P+ IT++ +I  +GK    D+   +F+ L  S  +     + +M + Y +A L  
Sbjct: 254 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMXVAYERAGLVA 313

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++     +P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 314 HAKRLLHELK----SPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMI 369

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             +           +F+    +G  PDS+   L+  AY K
Sbjct: 370 HLFSKYKKYANVIEVFDKMRGLGYFPDSNVIALVLNAYGK 409



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/267 (20%), Positives = 109/267 (40%), Gaps = 36/267 (13%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           +I V G+ G  + A  LF  MR  G  P+   YN L+  +      A+   +A+  F+ M
Sbjct: 162 MIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY----GDAELFGEAIHLFRLM 217

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +  +    N+VTYN ++    +    ++ N L +E+    + P+  TY+ ++  +GK G 
Sbjct: 218 Q-RKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGK 276

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSY--------GKRQAFD--------------- 173
           +     +  +++S+  + D + +  +  +Y         KR   +               
Sbjct: 277 LDRAAMLFQKLRSSGVEIDQVLYQTMXVAYERAGLVAHAKRLLHELKSPDNIPRDTAIHI 336

Query: 174 -----KMEQ---VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
                ++E+   VF+  + + E   +  F  MI  + K +       VF KM  + Y P 
Sbjct: 337 LAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLFSKYKKYANVIEVFDKMRGLGYFPD 396

Query: 226 FITYECIITMYGYCDNVSRAREIFDEL 252
                 ++  YG      +A  ++ E+
Sbjct: 397 SNVIALVLNAYGKLHEFDKANGVYMEM 423



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I++ GK G+   A  LF ++R+SG   D  +Y  +  A+    ++A  +A A    
Sbjct: 264 YSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMXVAY----ERAGLVAHAKRLL 319

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++K      P+ +  +  +   A A  +++   +F++  ++    DI  +  ++  + K
Sbjct: 320 HELKS-----PDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLFSK 374

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
                 +  V  +M+     PD     L++++YGK   FDK   V+
Sbjct: 375 YKKYANVIEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANGVY 420


>gi|410110071|gb|AFV61115.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           macrostachya]
          Length = 437

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 136/297 (45%), Gaps = 5/297 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YNA+I        KAK   +
Sbjct: 45  GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFRE 100

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +M+      PN  +Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 101 ARSLISEMR-TAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMI 159

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F  +      
Sbjct: 160 DVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFXLMQRKNIV 219

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSM++ YGK     KA  + Q+M      P+ ITY  II+++G    + RA  +
Sbjct: 220 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAML 279

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           F +L   G ++       M+ AY   GL   A  L     +    P  +   +L  A
Sbjct: 280 FQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKSPDNIPRDTAIHILAGA 336



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 152/327 (46%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 4   RQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 63

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  
Sbjct: 64  SKAIS----IFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTA 118

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +
Sbjct: 119 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 178

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F  M       + +TY  ++ +YG     
Sbjct: 179 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFXLMQRKNIVQNVVTYNSMMMIYGKTLEH 238

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + GV  D   Y+ +
Sbjct: 239 EKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTM 298

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  ++    +P
Sbjct: 299 IVAYERAGLVAHAKRLLHELKSPDNIP 325



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 136/292 (46%), Gaps = 5/292 (1%)

Query: 36  EMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95
           EMR     PD   Y+ LIT H     K      AL + QKM+  +R   ++V Y+ L+  
Sbjct: 2   EMRQRALSPDRYTYSTLIT-HF---GKEGLFDAALSWLQKME-QDRVPGDLVLYSNLIEL 56

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
             +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  S++S M++    P+
Sbjct: 57  SRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPN 116

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
             +++ L+  Y + + F +   VF  +   K    L T N MI  YG+  +  +A+ +F 
Sbjct: 117 TASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFW 176

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            M  M   P+ ++Y  ++ +YG  +    A  +F  + +      V T N+M+  Y    
Sbjct: 177 GMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFXLMQRKNIVQNVVTYNSMMMIYGKTL 236

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
              +A+ L +   N G+ P+S TY  +   + K    +    L +++  +G+
Sbjct: 237 EHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGV 288



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 109/220 (49%)

Query: 111 ELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170
           E+ +  L+PD YTY+ ++  +GK G+     S L +M+ ++   D++ ++ LI+   K  
Sbjct: 2   EMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 61

Query: 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
            + K   +F  L  S   P L  +N+MI  +GKA+L  +A  +  +M      P+  +Y 
Sbjct: 62  DYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYS 121

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
            ++TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF     M
Sbjct: 122 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 181

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           G+ P+  +Y  L + Y  A +      L   M++  IV N
Sbjct: 182 GIEPNVVSYNTLLRVYGDAELFGEAIHLFXLMQRKNIVQN 221



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 149/360 (41%), Gaps = 42/360 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEMR +G  P+ + Y+ L+T ++     
Sbjct: 74  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVEN--- 130

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 131 -KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 189

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF  +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 190 YNTLLRVYGDAELFGEAIHLFXLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 249

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           +   +P+ IT++ +I  +GK    D+   +F+ L  S  +     + +MI+ Y +A L  
Sbjct: 250 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVA 309

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++     +P  I  +  I +      +  A  +F +    G+   +     M+
Sbjct: 310 HAKRLLHELK----SPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIMVFERMI 365

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             +           +F+    +G  PDS+   L+  AY K +  +    +   M++ G V
Sbjct: 366 HLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEMQEVGCV 425


>gi|410110065|gb|AFV61112.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           citrodora]
          Length = 435

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 5/297 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YNA+I        KAK   +
Sbjct: 49  GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFRE 104

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +MK      PN  +Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 105 ARALISEMK-TAGVMPNTASYSTLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMI 163

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    + +++++N L+  YG  + F +   +F+ +     +
Sbjct: 164 DVYGQLGMAKEADKLFWGMRKMGIETNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIE 223

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSM++ YGK     KA  + Q+M      P+ ITY  II+++G    + RA  +
Sbjct: 224 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAML 283

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           F +L   G ++       M+ AY   GL   A  L     +    P  +   +L  A
Sbjct: 284 FQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKSPDNIPRDTAIHILAGA 340



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 138/295 (46%), Gaps = 5/295 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF EMR     PD   Y+ LIT H     K      AL + QKM+  +R   ++V Y+ L
Sbjct: 3   LFDEMRERALSPDRYTYSTLIT-HF---GKEGLFDAALSWLQKME-QDRVPGDLVLYSNL 57

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  +++S MK+   
Sbjct: 58  IELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARALISEMKTAGV 117

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+  +  +A+ 
Sbjct: 118 MPNTASYSTLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 177

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +F  M  M    + ++Y  ++ +YG  +    A  +F  + +   +  V T N+M+  Y 
Sbjct: 178 LFWGMRKMGIETNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 237

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
                 +A+ L +   N G+ P+S TY  +   + K    +    L +++  +G+
Sbjct: 238 KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGV 292



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 152/327 (46%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 8   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 67

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +  AL  E+  + + P+  
Sbjct: 68  SKAIS----IFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTA 122

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +
Sbjct: 123 SYSTLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 182

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +  + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG     
Sbjct: 183 RKMGIETNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 242

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + GV  D   Y+ +
Sbjct: 243 EKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTM 302

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  ++    +P
Sbjct: 303 IVAYERAGLVAHAKRLLHELKSPDNIP 329



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 111/225 (49%)

Query: 106 NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
           + LF E+ E  L+PD YTY+ ++  +GK G+     S L +M+ ++   D++ ++ LI+ 
Sbjct: 1   HGLFDEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIEL 60

Query: 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
             K   + K   +F  L  S   P L  +N+MI  +GKA+L  +A  +  +M      P+
Sbjct: 61  SRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPN 120

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
             +Y  ++TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF 
Sbjct: 121 TASYSTLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFW 180

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
               MG+  +  +Y  L + Y  A +      L + M++  I  N
Sbjct: 181 GMRKMGIETNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 225



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 151/360 (41%), Gaps = 42/360 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEM+ +G  P+ + Y+ L+T ++     
Sbjct: 78  KRSGFTPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLLTMYVEN--- 134

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   + N+V+
Sbjct: 135 -KKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIETNVVS 193

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 194 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 253

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           +   +P+ IT++ +I  +GK    D+   +F+ L  S  +     + +MI+ Y +A L  
Sbjct: 254 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVA 313

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++     +P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 314 HAKRLLHELK----SPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMI 369

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             +        A  +F+    +G  PDS+   L+  AY K +  +    +   M++ G V
Sbjct: 370 HLFSKYKKYANAVEVFDKMRGLGYFPDSNVIALVLNAYGKLHELDKANDVYMEMQEVGCV 429


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 155/353 (43%), Gaps = 32/353 (9%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M++    I +  IYS +I  + K G+   A  LF+EM+  G  PD   YN++I       
Sbjct: 245 MEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFC--- 301

Query: 61  DKAKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
             +   + A    Q+M  +ER   P++VTYN L+ A  +     +   L+ E+    + P
Sbjct: 302 -SSGRWSDAEQLLQEM--LERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIP 358

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY-GKRQAFDKMEQV 178
           +  TY+ ++D + K   +   E +   M +  C P++ITFN LID Y G ++  D ME  
Sbjct: 359 NTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGME-- 416

Query: 179 FKSLMHSKEKPTL----PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
              L+H   +  L     T+N++I  +        A  + Q+M +    P  +T  C   
Sbjct: 417 ---LLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVT--CDTL 471

Query: 235 MYGYCDN--VSRAREIFDELSKLGKDM-----------KVSTLNAMLEAYCMNGLPTEAD 281
           + G CDN  +  A E+F  + K  KD+            V T N ++      G   EA+
Sbjct: 472 LDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 531

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            L+E   + G+ PD+ TY  +     K +  +   ++   M      PN   F
Sbjct: 532 ELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 151/329 (45%), Gaps = 17/329 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L+  + ++G+   A+ L   M   G +P    Y  ++       D   AL       
Sbjct: 187 FTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSAL----DLL 242

Query: 74  QKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           +KM+ +    PN+V Y+ ++ + C   R+ D  N LF E+ E  + PD++TYN ++  + 
Sbjct: 243 RKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQN-LFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
            +G   + E +L  M   +  PD++T+N LI+++ K   F + E+++  ++     P   
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T++SMI  + K      AE++F  M     +P+ IT+  +I  Y     +    E+  E+
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY-------KA 305
           ++ G     +T N ++  + + G    A  L +   + G+ PD  T   L        K 
Sbjct: 422 TETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKL 481

Query: 306 YTKANMKELVQKLLKRMEQ----NGIVPN 330
                M +++QK  K ++     NG+ P+
Sbjct: 482 KDALEMFKVMQKSKKDLDASHPFNGVEPD 510



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 147/343 (42%), Gaps = 26/343 (7%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R    D   Y+ LI    K+G+   A  L+ EM   G  P+   Y+++I      +++ 
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK-QNRL 376

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            A A+ + Y    KG   C PN++T+N L+     A+ +D    L  E+ E+ L  D  T
Sbjct: 377 DA-AEHMFYLMATKG---CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTT 432

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++  +   G +     +L  M S+   PDI+T + L+D            ++FK + 
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQ 492

Query: 184 HSKE-----------KPTLPTFNSMI---INYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
            SK+           +P + T+N +I   IN GK     +AE ++++M      P  ITY
Sbjct: 493 KSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFL---EAEELYEEMPHRGIVPDTITY 549

Query: 230 ECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
             +I   G C    +  A ++FD +        V T   ++  YC  G   +   LF   
Sbjct: 550 SSMID--GLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              G+  ++ TY  L   + K         + + M  +G+ P+
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 143/314 (45%), Gaps = 8/314 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME-RCKPNIVT 88
           A+ LFS+M  S  RP PSV +      +  R +   L  +L  +QKM+  + RC  +I +
Sbjct: 63  AIDLFSDMLRS--RPLPSVVDFCKLMGVVVRMERPDLVISL--YQKMERKQIRC--DIYS 116

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           + IL++       +    + F ++ +  L PD+ T+N ++        + E  ++  +M 
Sbjct: 117 FTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMF 176

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
              C+P+++TF  L++   +     +   +   +M    +PT  T+ +++    K     
Sbjct: 177 ETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTV 236

Query: 209 KAEYVFQKMTAMKYT-PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            A  + +KM  + +  P+ + Y  II         S A+ +F E+ + G    + T N+M
Sbjct: 237 SALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +  +C +G  ++A+ L +      ++PD  TY  L  A+ K       ++L   M   GI
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGI 356

Query: 328 VPNKRFFLEALETF 341
           +PN   +   ++ F
Sbjct: 357 IPNTITYSSMIDGF 370



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 113/280 (40%), Gaps = 22/280 (7%)

Query: 6   WYIADTGIYSKLIA----VMGKKGQTRL--AMWLFSEMRNSGCRPDPSVYNALITAHLHT 59
           + +A  G    LI     + G  G  R+   M L  EM  +G   D + YN LI      
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 60  RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI--- 116
            D    L  AL   Q+M     C P+IVT + LL        +     +FK + +S    
Sbjct: 444 GD----LNAALDLLQEMISSGLC-PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDL 498

Query: 117 --------LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
                   + PD+ TYN ++      G   E E +   M      PD IT++ +ID   K
Sbjct: 499 DASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCK 558

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
           +   D+  Q+F S+      P + TF ++I  Y KA        +F +M       + IT
Sbjct: 559 QSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAIT 618

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           Y  +I  +    N++ A +IF E+   G      T+  ML
Sbjct: 619 YITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 6/162 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI+ +  +G+   A  L+ EM + G  PD   Y+++I        K   L +A
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLC----KQSRLDEA 565

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F  M G +   PN+VT+  L+    +A  VD    LF E+    +  +  TY  ++ 
Sbjct: 566 TQMFDSM-GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITF-NLLIDSYGKRQ 170
            + K G I     +   M S+   PD IT  N+L   + K +
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEE 666


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 153/334 (45%), Gaps = 13/334 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D+  Y  LI+ M K+G+   A  LF +M   G  P+   YN LI  + +  D    L +A
Sbjct: 318 DSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGD----LERA 373

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
             Y  +M  KG+    P++ TYN+L+ A      + + + + KE+ +  + PD  TYN +
Sbjct: 374 FSYRDEMVKKGI---MPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNIL 430

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++ Y + G  K+   + + M S   +P  +T+  LI    +R    + + +F+ ++    
Sbjct: 431 INGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGV 490

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRA 245
            P +  FN+M+  +       +A  + ++M      P  +T+  +  M G C    V  A
Sbjct: 491 SPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTL--MQGRCREGKVEEA 548

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           R + DE+ + G      + N ++  Y   G   +A  + +   ++G  P   TY  L K 
Sbjct: 549 RMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKC 608

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
             K    +L ++LLK M   GI P+   +L  +E
Sbjct: 609 LCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIE 642



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 143/317 (45%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ ++ V+ K+G+ + A      M   G +P+   YN +I  +  +R   +   + L   
Sbjct: 252 FNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGY-SSRGNIEGARRILDAM 310

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++KG+E   P+  TY  L+    +   +++ + LF ++ E  L P+  TYN ++D Y  
Sbjct: 311 -RVKGIE---PDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCN 366

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++   S    M      P + T+NLL+ +        + + + K +      P   T
Sbjct: 367 KGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAIT 426

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N +I  Y +     KA  +  +M +    P+ +TY  +I +    + +  A ++F+++ 
Sbjct: 427 YNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKIL 486

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V   NAM++ +C NG    A +L +      V PD  T+  L +   +    E
Sbjct: 487 DQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVE 546

Query: 314 LVQKLLKRMEQNGIVPN 330
             + LL  M++ GI P+
Sbjct: 547 EARMLLDEMKRRGIKPD 563



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 147/334 (44%), Gaps = 5/334 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M K++  +      + ++++  K  +  +A  L++EM     R   +VY   I  ++   
Sbjct: 204 MMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFR--LRISSTVYTFNIMVNVLC- 260

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K   L KA  +   M+G+   KPN+V+YN ++   +   N++    +   +    + PD
Sbjct: 261 -KEGKLKKAREFIGFMEGLG-FKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPD 318

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            YTY  ++    K G ++E   +  +M      P+ +T+N LID Y  +   ++      
Sbjct: 319 SYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRD 378

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++     P++ T+N ++         G+A+ + ++M      P  ITY  +I  Y  C 
Sbjct: 379 EMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCG 438

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           N  +A ++ +E+   G +    T  +++          EAD LFE   + GV+PD   + 
Sbjct: 439 NAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFN 498

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            +   +      E    LLK M++  + P++  F
Sbjct: 499 AMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTF 532



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 113/250 (45%), Gaps = 12/250 (4%)

Query: 87  VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK-NGMIKEMESVL- 144
           + +++L+R C + R  D+    F  + E  + P I T N ++  + K N M  EM  VL 
Sbjct: 180 IVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRM--EMAWVLY 237

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG-K 203
           + M   +    + TFN++++   K     K  +    +     KP + ++N++I  Y  +
Sbjct: 238 AEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSR 297

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKV 261
             ++G A  +   M      P   TY  +I+  G C    +  A  +FD++ ++G     
Sbjct: 298 GNIEG-ARRILDAMRVKGIEPDSYTYGSLIS--GMCKEGRLEEASGLFDKMVEIGLVPNA 354

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA-YTKANMKELVQKLLK 320
            T N +++ YC  G    A    +     G+ P  STY LL  A + +  M E    ++K
Sbjct: 355 VTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGE-ADDMIK 413

Query: 321 RMEQNGIVPN 330
            M + GI+P+
Sbjct: 414 EMRKKGIIPD 423


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 141/326 (43%), Gaps = 9/326 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG-CRPDPSVYNALITAHLHTRDKAKALAK 68
           D   Y+ LI  + K G+   A  LF +M  +G CRP+   YNAL+   L  +D+  A   
Sbjct: 45  DVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDG-LCKQDRLDAARA 103

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
            +   +K        P++VTYN L+ A  Q   VD+  A F ++ E    P + ++N ++
Sbjct: 104 VIAEARKRDF----APDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAII 159

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
               +   + +   V + M      P+++T++++ID   K    D+ +Q+   ++    +
Sbjct: 160 TGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCR 219

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P L  +  +++ +  A     A  + ++M +    P  +TY  +I        V  A EI
Sbjct: 220 PDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEI 279

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F EL        V T +A++  YC      E   +      M   P+  TY  +    + 
Sbjct: 280 FRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVM---REMACRPNVVTYNTMIWGLSM 336

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
            +  E    + + M + G VP+ R +
Sbjct: 337 VDRNEEAYGMFREMSECGFVPDARTY 362



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 123/254 (48%), Gaps = 8/254 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R +  D   Y+ L+A + + G+   A+  F++M   G  P    +NA+IT       +
Sbjct: 109 RKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLC----R 164

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A+ LA AL  F +M   +   PN+VTY++++    ++  +D+   L   +      PD+ 
Sbjct: 165 ARRLADALEVFNEMIDRDF-HPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLV 223

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            Y  ++  +   G +     +L RM S  C PD++T+ ++ID   K    D   ++F+ L
Sbjct: 224 AYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFREL 283

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           + +K  P + T++++I  Y +A    +   V ++M      P+ +TY  +I      D  
Sbjct: 284 VANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMAC---RPNVVTYNTMIWGLSMVDRN 340

Query: 243 SRAREIFDELSKLG 256
             A  +F E+S+ G
Sbjct: 341 EEAYGMFREMSECG 354



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 121/283 (42%), Gaps = 8/283 (2%)

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL-HESILAPDIYTY 124
           +A+AL +F     +   +P++V+Y  L+    +   VD    LF+++       P+ +TY
Sbjct: 26  VAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTY 85

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++D   K   +    +V++  +     PD++T+N L+ +  +    D+    F  +  
Sbjct: 86  NALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTE 145

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               PTL +FN++I    +AR    A  VF +M    + P+ +TY  +I      D +  
Sbjct: 146 EGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDE 205

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A+++ D +   G    +     ++  +   G    A  L     + G  PD  TY ++  
Sbjct: 206 AQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVID 265

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
              K    +   ++ + +  N   PN       + T+S+ + G
Sbjct: 266 KLCKVGRVDDAHEIFRELVANKCSPN-------VVTYSALIGG 301



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 105/245 (42%), Gaps = 2/245 (0%)

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILA-PDIYTYNGVMDAYGKNGMIKEMESVLSR 146
           T +I+L+   +   V Q    F    E   A PD+ +Y  +++   K G +     +  +
Sbjct: 12  TTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRK 71

Query: 147 M-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
           M  +  C+P+  T+N L+D   K+   D    V          P + T+N+++    +  
Sbjct: 72  MVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLG 131

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
              +A   F +MT   Y P+ +++  IIT       ++ A E+F+E+        + T +
Sbjct: 132 RVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYS 191

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            +++  C +    EA  L +   + G  PD   Y  L   ++ A   +    LL+RM   
Sbjct: 192 VVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQ 251

Query: 326 GIVPN 330
           G +P+
Sbjct: 252 GCIPD 256


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 137/315 (43%), Gaps = 5/315 (1%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  D   ++ +I  + K G  + A+ L   M   GC PD   +N L+        +AK +
Sbjct: 230 YSPDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLC----RAKEV 285

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +K     ++++    C PN+VTY  ++    +A  ++   A++ ++     +P++ TYN 
Sbjct: 286 SKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNV 345

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++ YGK G +    +V  +M   +C PD++TF+ LID Y +    D   +++  +    
Sbjct: 346 LINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYH 405

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA-MKYTPSFITYECIITMYGYCDNVSRA 245
            +P   TF  +I  + K    G+A +  +KM       P    Y  +I +      V  A
Sbjct: 406 IQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEA 465

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             I  E+ + G      T   ++  +CM G   EA   F      G +PDS         
Sbjct: 466 NMILIEMEEKGCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMVETGCSPDSIVVNSFISC 525

Query: 306 YTKANMKELVQKLLK 320
             K+ M   V  +++
Sbjct: 526 LLKSGMPGEVDHIMR 540



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 131/294 (44%), Gaps = 8/294 (2%)

Query: 41  GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR 100
           GC  +   YN L+   +       A+A   G+ Q   G+    P++ ++N++++   +  
Sbjct: 193 GCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQ--GGVY--SPDVWSFNVVIKGVCKVG 248

Query: 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITF 159
           +V +   L + + E   +PD  T+N +++   +   + +   VL R++ +  C P+++T+
Sbjct: 249 DVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTY 308

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
             +I  Y K    +    V+  ++     P + T+N +I  YGKA   G A  V+Q+M  
Sbjct: 309 TSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMIL 368

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
            +  P  +T+  +I  Y  C  +  A +I+ E+++        T   ++  +C      E
Sbjct: 369 RRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGE 428

Query: 280 ADLLFENSHNM--GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           A L F    NM   + P +  Y  +     K    +    +L  ME+ G  P+K
Sbjct: 429 A-LHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDK 481



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 71/330 (21%), Positives = 125/330 (37%), Gaps = 41/330 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRN-SGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           Y  +I++M + G+   A+ LF +M + SG  P     NA   + L     A  L  A   
Sbjct: 130 YRYVISLMCQSGRHTDALQLFDQMTDQSGYFP-----NARFLSFLSGSCAAAGLLDAAAA 184

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE-LHESILAPDIYTYNGVMDAY 131
                    C      YN L+        V    ALF+  +   + +PD++++N V+   
Sbjct: 185 LLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGV 244

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G +++   ++ RM    C PD +T N+L++   + +   K  +V +           
Sbjct: 245 CKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLR----------- 293

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
                        RLQ     +          P+ +TY  +I+ Y     +  A  ++++
Sbjct: 294 -------------RLQRDGVCM----------PNVVTYTSVISGYCKAGRMEDAMAVYND 330

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +  +G    V T N ++  Y   G    A  +++        PD  T+  L   Y +   
Sbjct: 331 MVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQ 390

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            +   K+   M Q  I PN   F   + TF
Sbjct: 391 LDDAMKIWTEMAQYHIQPNAHTFCIIIHTF 420


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 151/334 (45%), Gaps = 13/334 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D+  Y  LI+ M K+G+   A  LF +M   G  P+   YN LI  + +  D    L +A
Sbjct: 242 DSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGD----LERA 297

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
             Y  +M  KG+    P++ TYN+L+ A      + + + + KE+ +  + PD  TYN +
Sbjct: 298 FSYRDEMVKKGI---MPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNIL 354

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++ Y + G  K    + + M S   +P  +T+  LI    +R    + + +F+ ++    
Sbjct: 355 INGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGV 414

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRA 245
            P +  FN+MI  +       +A  + ++M      P  +T+  +  M G C    V  A
Sbjct: 415 SPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTL--MQGRCREGKVEEA 472

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           R + DE+   G      + N ++  Y   G   +A  + +   ++G  P   TY  L K 
Sbjct: 473 RMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKC 532

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
             K    +L ++LLK M   GI P+   +L  +E
Sbjct: 533 LCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIE 566



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 146/338 (43%), Gaps = 19/338 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA---- 65
           DT  Y   + ++ +    +LA+ L  ++  +    +  +++ L  +      K+      
Sbjct: 125 DTKSYCLAVVLLARLPSPKLALQLLKQVMETRIATNRELFDELTLSRDRLSVKSSIVFDL 184

Query: 66  ----LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
               L KA  +   M+G+   KPN+V+YN ++   +   N++    +   +    + PD 
Sbjct: 185 LEGKLKKAREFIGFMEGLG-FKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDS 243

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM-----E 176
           YTY  ++    K G ++E   +  +M      P+ +T+N LID Y  +   ++      E
Sbjct: 244 YTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDE 303

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
            V K +M     P++ T+N ++         G+A+ + ++M      P  ITY  +I  Y
Sbjct: 304 MVKKGIM-----PSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGY 358

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
             C N  RA ++ +E+   G +    T  +++          EAD LFE   + GV+PD 
Sbjct: 359 SRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDV 418

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
             +  +   +      E    LLK M++  + P++  F
Sbjct: 419 IMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTF 456



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 135/307 (43%), Gaps = 5/307 (1%)

Query: 24  KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK 83
           +G+ + A      M   G +P+   YN +I  +  +R   +   + L    ++KG+E   
Sbjct: 186 EGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGY-SSRGNIEGARRILDAM-RVKGIE--- 240

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+  TY  L+    +   +++ + LF ++ E  L P+  TYN ++D Y   G ++   S 
Sbjct: 241 PDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSY 300

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
              M      P + T+NLL+ +        + + + K +      P   T+N +I  Y +
Sbjct: 301 RDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSR 360

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
                +A  +  +M +    P+ +TY  +I +    + +  A ++F+++   G    V  
Sbjct: 361 CGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIM 420

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            NAM++ +C NG    A +L +      V PD  T+  L +   +    E  + LL  M+
Sbjct: 421 FNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMK 480

Query: 324 QNGIVPN 330
             GI P+
Sbjct: 481 XRGIKPD 487


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 153/334 (45%), Gaps = 13/334 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D+  Y  LI+ M K+G+   A  LF +M   G  P+   YN LI  + +  D    L +A
Sbjct: 296 DSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGD----LERA 351

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
             Y  +M  KG+    P++ TYN+L+ A      + + + + KE+ +  + PD  TYN +
Sbjct: 352 FSYRDEMVKKGI---MPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNIL 408

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++ Y + G  K+   + + M S   +P  +T+  LI    +R    + + +F+ ++    
Sbjct: 409 INGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGV 468

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRA 245
            P +  FN+M+  +       +A  + ++M      P  +T+  +  M G C    V  A
Sbjct: 469 SPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTL--MQGRCREGKVEEA 526

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           R + DE+ + G      + N ++  Y   G   +A  + +   ++G  P   TY  L K 
Sbjct: 527 RMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKC 586

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
             K    +L ++LLK M   GI P+   +L  +E
Sbjct: 587 LCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIE 620



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 143/317 (45%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ ++ V+ K+G+ + A      M   G +P+   YN +I  +  +R   +   + L   
Sbjct: 230 FNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGY-SSRGNIEGARRILDAM 288

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++KG+E   P+  TY  L+    +   +++ + LF ++ E  L P+  TYN ++D Y  
Sbjct: 289 -RVKGIE---PDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCN 344

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++   S    M      P + T+NLL+ +        + + + K +      P   T
Sbjct: 345 KGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAIT 404

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N +I  Y +     KA  +  +M +    P+ +TY  +I +    + +  A ++F+++ 
Sbjct: 405 YNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKIL 464

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V   NAM++ +C NG    A +L +      V PD  T+  L +   +    E
Sbjct: 465 DQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVE 524

Query: 314 LVQKLLKRMEQNGIVPN 330
             + LL  M++ GI P+
Sbjct: 525 EARMLLDEMKRRGIKPD 541



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 147/334 (44%), Gaps = 5/334 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M K++  +      + ++++  K  +  +A  L++EM     R   +VY   I  ++   
Sbjct: 182 MMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFR--LRISSTVYTFNIMVNVLC- 238

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K   L KA  +   M+G+   KPN+V+YN ++   +   N++    +   +    + PD
Sbjct: 239 -KEGKLKKAREFIGFMEGLG-FKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPD 296

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            YTY  ++    K G ++E   +  +M      P+ +T+N LID Y  +   ++      
Sbjct: 297 SYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRD 356

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++     P++ T+N ++         G+A+ + ++M      P  ITY  +I  Y  C 
Sbjct: 357 EMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCG 416

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           N  +A ++ +E+   G +    T  +++          EAD LFE   + GV+PD   + 
Sbjct: 417 NAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFN 476

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            +   +      E    LLK M++  + P++  F
Sbjct: 477 AMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTF 510



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 113/250 (45%), Gaps = 12/250 (4%)

Query: 87  VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK-NGMIKEMESVL- 144
           + +++L+R C + R  D+    F  + E  + P I T N ++  + K N M  EM  VL 
Sbjct: 158 IVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRM--EMAWVLY 215

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG-K 203
           + M   +    + TFN++++   K     K  +    +     KP + ++N++I  Y  +
Sbjct: 216 AEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSR 275

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKV 261
             ++G A  +   M      P   TY  +I+  G C    +  A  +FD++ ++G     
Sbjct: 276 GNIEG-ARRILDAMRVKGIEPDSYTYGSLIS--GMCKEGRLEEASGLFDKMVEIGLVPNA 332

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA-YTKANMKELVQKLLK 320
            T N +++ YC  G    A    +     G+ P  STY LL  A + +  M E    ++K
Sbjct: 333 VTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGE-ADDMIK 391

Query: 321 RMEQNGIVPN 330
            M + GI+P+
Sbjct: 392 EMRKKGIIPD 401


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 154/341 (45%), Gaps = 5/341 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  +  KG+      L  EMR  G  PD   YN L+        K   L + L   
Sbjct: 280 YNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFC----KEGNLHQGLVLL 335

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M G +   PN+VTY  L+    +A N+ +   +F ++    L P+  TY  ++D + +
Sbjct: 336 SEMVG-KGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQ 394

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G++ E   VLS M  +   P ++T+N L+  Y       +   + + ++     P + +
Sbjct: 395 KGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVS 454

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           ++++I  + + R  GKA  + ++M      P  +TY  +I        +  A ++F E+ 
Sbjct: 455 YSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMM 514

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G      T  +++ AYC++G  ++A  L +     G  PD+ TY +L     K    +
Sbjct: 515 RRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTK 574

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAK 354
           + ++LL ++     VP+   +   +E  S++   S  G  K
Sbjct: 575 VAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVK 615



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 139/303 (45%), Gaps = 9/303 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A  +F +M  +G  P+   YN +I   +   D    L K LG+ +KM+  E   PN+VTY
Sbjct: 191 AERVFRDMVRNGVSPNVYTYNVIIRGVVSQGD----LEKGLGFMRKME-KEGISPNVVTY 245

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           N L+ A  + + V +  AL + +    +A ++ +YN V++     G + E+  ++  M+ 
Sbjct: 246 NTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRG 305

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
               PD +T+N L++ + K     +   +   ++     P + T+ ++I    KA    +
Sbjct: 306 KGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSR 365

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAM 267
           A  +F +M      P+  TY  +I   G+C    ++ A ++  E+   G    V T NA+
Sbjct: 366 AVEIFDQMRVRGLRPNERTYTTLID--GFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNAL 423

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +  YC  G   EA  +       G+ PD  +Y  +   + +        ++ + M + G+
Sbjct: 424 VHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGV 483

Query: 328 VPN 330
           +P+
Sbjct: 484 LPD 486



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/340 (20%), Positives = 150/340 (44%), Gaps = 9/340 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH-TRDKAKALA 67
           + + ++  ++  + + G    A+ L       G  P    YNA++ A L  +    +   
Sbjct: 130 SSSAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYD 189

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            A   F+ M       PN+ TYN+++R      ++++     +++ +  ++P++ TYN +
Sbjct: 190 DAERVFRDMV-RNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTL 248

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +DA  K   +KE  ++L  M       ++I++N +I+    +    ++ ++ + +     
Sbjct: 249 IDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGL 308

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P   T+N+++  + K     +   +  +M     +P+ +TY  +I       N+SRA E
Sbjct: 309 VPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVE 368

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           IFD++   G      T   +++ +C  GL  EA  +       G +P   TY  L   Y 
Sbjct: 369 IFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYC 428

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
                +    +L+ M + G+ P+       + ++S+ +AG
Sbjct: 429 FLGRVQEAVGILRGMVERGLPPD-------VVSYSTVIAG 461



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 147/320 (45%), Gaps = 11/320 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    KK + + AM L   M   G   +   YN++I   L  + +   + + +   
Sbjct: 245 YNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVING-LCGKGRMSEVGELV--- 300

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M+G +   P+ VTYN L+    +  N+ Q   L  E+    L+P++ TY  +++   K
Sbjct: 301 EEMRG-KGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCK 359

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +     +  +M+    +P+  T+  LID + ++   ++  +V   ++ S   P++ T
Sbjct: 360 AGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVT 419

Query: 194 FNSMIINYG-KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFD 250
           +N+++  Y    R+Q +A  + + M      P  ++Y  +I   G+C    + +A ++ +
Sbjct: 420 YNALVHGYCFLGRVQ-EAVGILRGMVERGLPPDVVSYSTVIA--GFCRERELGKAFQMKE 476

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+ + G      T +++++  C+     EA  LF      G+ PD  TY  L  AY    
Sbjct: 477 EMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDG 536

Query: 311 MKELVQKLLKRMEQNGIVPN 330
                 +L   M Q G +P+
Sbjct: 537 ELSKALRLHDEMVQRGFLPD 556



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/357 (20%), Positives = 144/357 (40%), Gaps = 55/357 (15%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + +  + D   Y+ L+    K+G     + L SEM   G  P+   Y  LI        K
Sbjct: 304 RGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMC----K 359

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A  L++A+  F +M+ +   +PN  TY  L+    Q   +++   +  E+  S  +P + 
Sbjct: 360 AGNLSRAVEIFDQMR-VRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVV 418

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++  Y   G ++E   +L  M      PD+++++ +I  + + +   K  Q+ + +
Sbjct: 419 TYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEM 478

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           +     P   T++S+I      +   +A  +F++M      P  +TY  +I  Y     +
Sbjct: 479 VEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGEL 538

Query: 243 SRAREIFDELSKLG--------------------------------------KDMKVSTL 264
           S+A  + DE+ + G                                       D+  +TL
Sbjct: 539 SKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTL 598

Query: 265 ------------NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
                         +++ +CM GL  EAD +F+        P+++ Y L+   +++ 
Sbjct: 599 IENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRG 655



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 81/199 (40%), Gaps = 24/199 (12%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++  + DT  YS LI  +  + +   A  LF EM   G  PD   Y +LI A+    +  
Sbjct: 480 EKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGE-- 537

Query: 64  KALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             L+KAL    +M  +G     P+ VTY++L+    +         L  +L      PD 
Sbjct: 538 --LSKALRLHDEMVQRGF---LPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDD 592

Query: 122 YTYN---------------GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
            TYN               G++  +   G++ E + V   M     KP+   +NL+I  +
Sbjct: 593 VTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGH 652

Query: 167 GKRQAFDKMEQVFKSLMHS 185
            +     K   ++  L HS
Sbjct: 653 SRGGNVHKAYNLYMELEHS 671



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 10/154 (6%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR ++ D   YS LI  + KK +T++A  L  ++      PD   YN LI    +   K+
Sbjct: 550 QRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKS 609

Query: 64  -KALAKALGYFQKMKGMERC---------KPNIVTYNILLRACAQARNVDQVNALFKELH 113
            + L K       M   +R          KPN   YN+++   ++  NV +   L+ EL 
Sbjct: 610 VEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELE 669

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
            S  A        ++ A  + GM  E+  +L  +
Sbjct: 670 HSSFACHTVAVIALVKALAREGMNDELSRLLQNI 703


>gi|410110109|gb|AFV61134.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           diamantinensis]
          Length = 363

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 132/273 (48%), Gaps = 6/273 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ +FS ++ SG  PD   YNA+I        KAK   +A     +MK      PN  +Y
Sbjct: 5   AISIFSRLKRSGFTPDLVAYNAMINVF----GKAKLFREARSLISEMK-TAGVMPNTTSY 59

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           + LL    + +   +   +F E+ E     D+ T N ++D YG+ GM KE + +   M+ 
Sbjct: 60  STLLTMYVENKKFLEALXVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 119

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
              +P+++++N L+  YG  + F +   +F+ +     +  + T+NSM++ YGK     K
Sbjct: 120 MGIEPNVVSYNTLLRVYGDAELFGESIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEK 179

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  + Q+M +    P+ ITY  II+++G    + RA  +F +L   G ++       M+ 
Sbjct: 180 ANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIV 239

Query: 270 AYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKL 301
           AY   GL   A  LL E      +  D++ + L
Sbjct: 240 AYERAGLIAHAKRLLHELKRPDNIPRDTAIHIL 272



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 148/323 (45%), Gaps = 19/323 (5%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEM+ +G  P+ + Y+ L+T ++     
Sbjct: 13  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVEN--- 69

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   +AL  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ 
Sbjct: 70  -KKFLEALXVFSEMREI-KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 127

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++  YG   +  E   +   M+    + +++T+N ++  YGK    +K   + + +
Sbjct: 128 SYNTLLRVYGDAELFGESIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 187

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P   T++++I  +GK     +A  +FQK+ +       I ++ +I  Y     +
Sbjct: 188 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVAYERAGLI 247

Query: 243 SRAREIFDELSK---LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           + A+ +  EL +   + +D  +  L          G   EA  +F  + + G   D + +
Sbjct: 248 AHAKRLLHELKRPDNIPRDTAIHILAGA-------GRIEEATYVFRQAIDAGEVKDITVF 300

Query: 300 K----LLYKAYTKANMKELVQKL 318
           +    LL K    AN+ E+  K+
Sbjct: 301 ERMIHLLSKYKKYANVVEVFDKM 323



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 129/263 (49%), Gaps = 1/263 (0%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +KA+  F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  +Y+ 
Sbjct: 3   SKAISIFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 61

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y +N    E   V S M+  +C  D+ T N++ID YG+     + +++F  +    
Sbjct: 62  LLTMYVENKKFLEALXVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 121

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + ++N+++  YG A L G++ ++F+ M       + +TY  ++ +YG      +A 
Sbjct: 122 IEPNVVSYNTLLRVYGDAELFGESIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 181

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G +    T + ++  +   G    A +LF+   + GV  D   ++ +  AY
Sbjct: 182 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVAY 241

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            +A +    ++LL  +++   +P
Sbjct: 242 ERAGLIAHAKRLLHELKRPDNIP 264



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
           + K   +F  L  S   P L  +N+MI  +GKA+L  +A  +  +M      P+  +Y  
Sbjct: 2   YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 61

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           ++TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF     MG
Sbjct: 62  LLTMYVENKKFLEALXVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 121

Query: 292 VTPDSSTYKLLYKAYTKA-------NMKELVQKLLKRMEQNGIVPN 330
           + P+  +Y  L + Y  A       ++  L+Q+  K +EQN +  N
Sbjct: 122 IEPNVVSYNTLLRVYGDAELFGESIHLFRLMQR--KNIEQNVVTYN 165



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 113/271 (41%), Gaps = 36/271 (13%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           +I V G+ G  + A  LF  MR  G  P+   YN L+  +      A+   +++  F+ M
Sbjct: 97  MIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY----GDAELFGESIHLFRLM 152

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +  +  + N+VTYN ++    +    ++ N L +E+    + P+  TY+ ++  +GK G 
Sbjct: 153 Q-RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGK 211

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSY--------GKRQAFD--------------- 173
           +     +  +++S   + D I F  +I +Y         KR   +               
Sbjct: 212 LDRAAMLFQKLRSTGVEIDQILFQTMIVAYERAGLIAHAKRLLHELKRPDNIPRDTAIHI 271

Query: 174 -----KMEQ---VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
                ++E+   VF+  + + E   +  F  MI    K +       VF KM  + Y P 
Sbjct: 272 LAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPD 331

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLG 256
                 ++  YG      +A +++ E+ ++G
Sbjct: 332 SNVIAVVLNAYGKLQEFDKANDVYMEMQEVG 362



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 86/189 (45%)

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           S+ SR+K +   PD++ +N +I+ +GK + F +   +   +  +   P   ++++++  Y
Sbjct: 7   SIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMY 66

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            + +   +A  VF +M  +K      T   +I +YG       A ++F  + K+G +  V
Sbjct: 67  VENKKFLEALXVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 126

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            + N +L  Y    L  E+  LF       +  +  TY  +   Y K    E    L++ 
Sbjct: 127 VSYNTLLRVYGDAELFGESIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQE 186

Query: 322 MEQNGIVPN 330
           M+  GI PN
Sbjct: 187 MQSRGIEPN 195


>gi|255661212|gb|ACU25775.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 426

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 142/294 (48%), Gaps = 6/294 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YN++I        KAK   +
Sbjct: 42  GDLVLYSNLIELSRKLYDYSKAISIFSRLKRSGIVPDLVAYNSMINVF----GKAKLFRE 97

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +M+ M    P+ V+Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 98  ARSLISEMR-MVGVVPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCLLDLTTCNIMI 156

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+  M KE + +   M+    +P+++++N L+  YG  + F +   +F+ +     +
Sbjct: 157 DVYGQLDMAKEADKLFWSMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIE 216

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+N+M++ YGK     KA  + Q+M +    P+ ITY  II+++G    + RA  +
Sbjct: 217 QNVVTYNTMMMIYGKTLEHEKANNLIQEMHSRGIEPNAITYSTIISIWGKVGKLDRAAML 276

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKL 301
           F +L   G ++       M+ AY   GL   A  LL E      +  D++ + L
Sbjct: 277 FQKLRSSGVEIDHVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHIL 330



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 150/316 (47%), Gaps = 5/316 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI   GK+G    A+    +M       D  +Y+ LI       D +KA++     F
Sbjct: 12  YSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLYDYSKAIS----IF 67

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++K      P++V YN ++    +A+   +  +L  E+    + PD  +Y+ ++  Y +
Sbjct: 68  SRLK-RSGIVPDLVAYNSMINVFGKAKLFREARSLISEMRMVGVVPDTVSYSTLLTMYVE 126

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           N    E  SV + M+  +C  D+ T N++ID YG+     + +++F S+     +P + +
Sbjct: 127 NQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKMGIEPNVVS 186

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N+++  YG A L G+A ++F+ M       + +TY  ++ +YG      +A  +  E+ 
Sbjct: 187 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMH 246

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G +    T + ++  +   G    A +LF+   + GV  D   Y+ +  AY +A +  
Sbjct: 247 SRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYERAGLVA 306

Query: 314 LVQKLLKRMEQNGIVP 329
             ++LL  +++   +P
Sbjct: 307 HAKRLLHELKRPDNIP 322



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 152/332 (45%), Gaps = 17/332 (5%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+   + D   Y+ +I V GK    R A  L SEMR  G  PD   Y+ L+T ++     
Sbjct: 71  KRSGIVPDLVAYNSMINVFGKAKLFREARSLISEMRMVGVVPDTVSYSTLLTMYVEN--- 127

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +   +AL  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ 
Sbjct: 128 -QKFLEALSVFAEMREI-KCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKMGIEPNVV 185

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++  YG   +  E   +   M+    + +++T+N ++  YGK    +K   + +  
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQE- 244

Query: 183 MHSKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           MHS+  +P   T++++I  +GK     +A  +FQK+ +       + Y+ +I  Y     
Sbjct: 245 MHSRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYERAGL 304

Query: 242 VSRAREIFDELSK---LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
           V+ A+ +  EL +   + +D  +  L          G   EA  +F  + + G   D + 
Sbjct: 305 VAHAKRLLHELKRPDNIPRDTAIHILAGA-------GRIEEATWVFRQAIDAGEVKDITV 357

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           ++ +   ++K      V ++ ++M   G  P+
Sbjct: 358 FERMVDLFSKYKKYPNVVEVFEKMRGLGYFPD 389



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 108/217 (49%)

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
           E  L+P  YTY+ ++  +GK G+  +  S L +M+ ++   D++ ++ LI+   K   + 
Sbjct: 2   ERGLSPXRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLYDYS 61

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           K   +F  L  S   P L  +NSMI  +GKA+L  +A  +  +M  +   P  ++Y  ++
Sbjct: 62  KAISIFSRLKRSGIVPDLVAYNSMINVFGKAKLFREARSLISEMRMVGVVPDTVSYSTLL 121

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
           TMY        A  +F E+ ++   + ++T N M++ Y    +  EAD LF +   MG+ 
Sbjct: 122 TMYVENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKMGIE 181

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 218



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 142/321 (44%), Gaps = 9/321 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + DT  YS L+ +  +  +   A+ +F+EMR   C  D +  N +I  +    D AK   
Sbjct: 111 VPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQL-DMAKEAD 169

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           K     +KM G+E   PN+V+YN LLR    A    +   LF+ +    +  ++ TYN +
Sbjct: 170 KLFWSMRKM-GIE---PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTM 225

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           M  YGK    ++  +++  M S   +P+ IT++ +I  +GK    D+   +F+ L  S  
Sbjct: 226 MMIYGKTLEHEKANNLIQEMHSRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGV 285

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +     + +MI+ Y +A L   A+ +  ++      P  I  +  I +      +  A  
Sbjct: 286 EIDHVLYQTMIVAYERAGLVAHAKRLLHELK----RPDNIPRDTAIHILAGAGRIEEATW 341

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F +    G+   ++    M++ +           +FE    +G  PDS+   L+  AY 
Sbjct: 342 VFRQAIDAGEVKDITVFERMVDLFSKYKKYPNVVEVFEKMRGLGYFPDSNVIALVLNAYG 401

Query: 308 KANMKELVQKLLKRMEQNGIV 328
           K +  +    +   M+  G V
Sbjct: 402 KLHEFDKANDVYLEMQDEGCV 422



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 118/293 (40%), Gaps = 40/293 (13%)

Query: 38  RNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACA 97
           R  G  P    Y+ LIT H     K      AL + QKM+  +R   ++V Y+ L+    
Sbjct: 1   RERGLSPXRYTYSTLIT-HF---GKEGLFDDALSWLQKME-QDRVPGDLVLYSNLIE--- 52

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
                              L+  +Y Y+  +             S+ SR+K +   PD++
Sbjct: 53  -------------------LSRKLYDYSKAI-------------SIFSRLKRSGIVPDLV 80

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
            +N +I+ +GK + F +   +   +      P   ++++++  Y + +   +A  VF +M
Sbjct: 81  AYNSMINVFGKAKLFREARSLISEMRMVGVVPDTVSYSTLLTMYVENQKFLEALSVFAEM 140

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
             +K      T   +I +YG  D    A ++F  + K+G +  V + N +L  Y    L 
Sbjct: 141 REIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKMGIEPNVVSYNTLLRVYGDAELF 200

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            EA  LF       +  +  TY  +   Y K    E    L++ M   GI PN
Sbjct: 201 GEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHSRGIEPN 253


>gi|115479179|ref|NP_001063183.1| Os09g0417500 [Oryza sativa Japonica Group]
 gi|50253027|dbj|BAD29277.1| putative fertility restorer homologue A [Oryza sativa Japonica
           Group]
 gi|113631416|dbj|BAF25097.1| Os09g0417500 [Oryza sativa Japonica Group]
          Length = 618

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 133/303 (43%), Gaps = 10/303 (3%)

Query: 31  MW-LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           +W LF EM   G  P    YN LI A  H  D    +AKA   + +M    R  PN+VTY
Sbjct: 157 VWELFDEMLGRGMVPSVVTYNTLINACRHQGD----VAKAWEVWDQMVA-RRIDPNVVTY 211

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
             ++ A  +   +     LF E+ E+ + P++YTYN +M ++ K   IK        +  
Sbjct: 212 TTMICALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYYDLLK 271

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
               P+ + F  LID   +     + + +F  +   +  PT+P +NS+I    ++    +
Sbjct: 272 CGLVPNDVIFTTLIDGLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQE 331

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAM 267
           A   FQ++      P    + C I + G CD   +  A    + + + G  +  +  N +
Sbjct: 332 ALAFFQEIIRKGLRPD--EFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVL 389

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           ++ YC +G   EA +       +GV P+  TY  L   ++K    E+   +   M   G+
Sbjct: 390 IDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGV 449

Query: 328 VPN 330
            PN
Sbjct: 450 EPN 452



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/263 (19%), Positives = 117/263 (44%), Gaps = 4/263 (1%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +AL  F +++ +    P +   N +L    +A  + +V  LF E+    + P + TYN +
Sbjct: 124 EALSVFGRLREL----PALPACNAILDGLVKAHMLARVWELFDEMLGRGMVPSVVTYNTL 179

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++A    G + +   V  +M + +  P+++T+  +I +  +       E +F  +  +  
Sbjct: 180 INACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMICALCEEDCIGDAEGLFLEMKEAGM 239

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P L T+N+++ ++ K      A   +  +      P+ + +  +I      + ++ A+ 
Sbjct: 240 RPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVIFTTLIDGLCQANRITEAKN 299

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           IF ++ +      V   N+++     +G   EA   F+     G+ PD  T  ++ +   
Sbjct: 300 IFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKGLRPDEFTCSIVVRGLC 359

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
                ++  + L+ M+Q+GI  N
Sbjct: 360 DGGQMQVATRFLEVMQQSGIALN 382



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 126/299 (42%), Gaps = 9/299 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + ++     A  LF EM+ +G RP+   YNAL+++H   RD  K    AL ++
Sbjct: 211 YTTMICALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHF-KRDNIK---HALVFY 266

Query: 74  QKMKGMERCK--PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             +    +C   PN V +  L+    QA  + +   +F ++    +AP +  YN ++   
Sbjct: 267 YDLL---KCGLVPNDVIFTTLIDGLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGA 323

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            ++G  +E  +    +     +PD  T ++++             +  + +  S      
Sbjct: 324 FRSGYAQEALAFFQEIIRKGLRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNA 383

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             +N +I  Y K+    +A     +M+ +   P+ +TY  +I  +     +  A  I+ E
Sbjct: 384 AAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTE 443

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           +   G +  V T  A++  +  NG    A  L +     G+  ++ T  +L     + N
Sbjct: 444 MVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCREN 502



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 140/329 (42%), Gaps = 19/329 (5%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           I++ LI  + +  +   A  +F +M      P   VYN+LI    H   ++    +AL +
Sbjct: 280 IFTTLIDGLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLI----HGAFRSGYAQEALAF 335

Query: 73  FQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           FQ++  KG+   +P+  T +I++R       +       + + +S +A +   YN ++D 
Sbjct: 336 FQEIIRKGL---RPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDE 392

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           Y K+G + E     +RM     +P+++T++ LID + K    +    ++  ++    +P 
Sbjct: 393 YCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPN 452

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREI 248
           + T+ ++I  + K      A ++ ++M       + IT   ++   G C  + V  A   
Sbjct: 453 VVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVD--GLCRENRVQDAVRF 510

Query: 249 FDELSKLGKDMKVSTLN------AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             E S   K  K  ++        ++    ++G   EA   F    + G+ PD  TY L+
Sbjct: 511 IMEYSGQKKSEKNPSIANSVTYMTLIYGLYIDGQYNEACHFFSCMRDSGMVPDRFTYTLV 570

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNK 331
            +             L   M + G+ P K
Sbjct: 571 IRGLCMLGYVLNAMMLYADMVKVGVKPTK 599



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 100/242 (41%), Gaps = 3/242 (1%)

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
            +L+ A +Q    D+  ++F  L E    P +   N ++D   K  M+  +  +   M  
Sbjct: 110 GVLVIALSQMALPDEALSVFGRLRE---LPALPACNAILDGLVKAHMLARVWELFDEMLG 166

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
               P ++T+N LI++   +    K  +V+  ++  +  P + T+ +MI    +    G 
Sbjct: 167 RGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMICALCEEDCIGD 226

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           AE +F +M      P+  TY  +++ +   DN+  A   + +L K G          +++
Sbjct: 227 AEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVIFTTLID 286

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             C     TEA  +F +     V P    Y  L     ++   +      + + + G+ P
Sbjct: 287 GLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKGLRP 346

Query: 330 NK 331
           ++
Sbjct: 347 DE 348



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 127/299 (42%), Gaps = 16/299 (5%)

Query: 5   RWYIADT-GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           R+ +A T  +Y+ LI    + G  + A+  F E+   G RPD     +++   L    + 
Sbjct: 306 RYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKGLRPD-EFTCSIVVRGLCDGGQM 364

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           +   + L   Q+  G+     N   YN+L+    ++ N+D+       + E  + P++ T
Sbjct: 365 QVATRFLEVMQQ-SGIAL---NAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVT 420

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ ++D + KNG ++   ++ + M +   +P+++T+  LI  + K    D    + K + 
Sbjct: 421 YSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEME 480

Query: 184 HSKEKPTLPTFNSMIINYGKA-RLQGKAEYVFQKMTAMKY--TPSF---ITYECIITMYG 237
                    T + ++    +  R+Q    ++ +     K    PS    +TY  +I  YG
Sbjct: 481 EKGIYSNAITVSVLVDGLCRENRVQDAVRFIMEYSGQKKSEKNPSIANSVTYMTLI--YG 538

Query: 238 -YCDN-VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
            Y D   + A   F  +   G      T   ++   CM G    A +L+ +   +GV P
Sbjct: 539 LYIDGQYNEACHFFSCMRDSGMVPDRFTYTLVIRGLCMLGYVLNAMMLYADMVKVGVKP 597


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 144/326 (44%), Gaps = 8/326 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI    ++     A  +F EM   GCR +   Y  LI    H     + + +A
Sbjct: 252 DFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLI----HGLCVERRIDEA 307

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           +  F KMK  + C P + TY +L++A C   R  + +N L KE+ E  + P+I+TY  ++
Sbjct: 308 MDLFVKMKD-DDCYPTVRTYTVLIKALCGSERKSEALN-LVKEMEEKGIKPNIHTYTVLI 365

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D+      +++   +L +M      P++IT+N LI+ Y KR   +    V + +     +
Sbjct: 366 DSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLR 425

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   T+N +I  Y K  +  KA  V  KM   K  P  +TY  +I       N   A  +
Sbjct: 426 PNTRTYNELIKGYCKRNVH-KAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRL 484

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
              ++  G      T  +M+++ C +    EA  LF++     V P+   Y  L   Y K
Sbjct: 485 LSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCK 544

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
           A        +L++M     +PN   F
Sbjct: 545 AGKVNEAHLMLEKMLSKNCLPNSLTF 570



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 140/327 (42%), Gaps = 8/327 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    K+G    A+ +   M +   RP+   YN LI  +       + + KA+G  
Sbjct: 396 YNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYC-----KRNVHKAMGVL 450

Query: 74  QKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            KM  +ER   P++VTYN L+    ++ N D    L   +++  L PD +TY  ++D+  
Sbjct: 451 NKM--LERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLC 508

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K+  ++E   +   ++     P+++ +  LID Y K    ++   + + ++     P   
Sbjct: 509 KSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSL 568

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           TFN++I          +A  + +KM  +   P+  T   +I       +   A   F ++
Sbjct: 569 TFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQM 628

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G      T    ++ YC  G   +A+ +       GV+PD  TY  L K Y      
Sbjct: 629 LSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRT 688

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALE 339
                +LKRM   G  P++  FL  ++
Sbjct: 689 NSAFVVLKRMHDTGCEPSQHTFLSLIK 715



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 153/336 (45%), Gaps = 17/336 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  +  + +   A  L  +M   G  P+   YNALI  +     K   +  AL   
Sbjct: 361 YTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYC----KRGMIEDALDVV 416

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M+     +PN  TYN L++   + RNV +   +  ++ E  + PD+ TYN ++D   +
Sbjct: 417 ELMES-RNLRPNTRTYNELIKGYCK-RNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCR 474

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G       +LS M      PD  T+  +IDS  K +  ++   +F SL      P +  
Sbjct: 475 SGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVM 534

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDE 251
           + ++I  Y KA    +A  + +KM +    P+ +T+  +I  +G C +  +  A  + ++
Sbjct: 535 YTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALI--HGLCTDGKLKEATLLEEK 592

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + K+     VST   ++     +G    A   F+   + G  PD+ TY    + Y +   
Sbjct: 593 MVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGR 652

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
            +  + ++ +M++NG+ P+       L T+SS + G
Sbjct: 653 LQDAEDMVAKMKENGVSPD-------LFTYSSLIKG 681



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 150/351 (42%), Gaps = 26/351 (7%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R  + D   Y+ LI    + G    A  L S M + G  PDP  Y ++I +      K+
Sbjct: 455 ERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLC----KS 510

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           K + +A   F  ++  +   PN+V Y  L+    +A  V++ + + +++      P+  T
Sbjct: 511 KRVEEACDLFDSLE-QKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLT 569

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           +N ++     +G +KE   +  +M     +P + T  +LI    K   FD   + F+ ++
Sbjct: 570 FNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQML 629

Query: 184 HSKEKPTLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
            S  KP   T+ + I  Y +  RLQ  AE +  KM     +P   TY  +I  YG     
Sbjct: 630 SSGTKPDAHTYTTFIQTYCREGRLQ-DAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRT 688

Query: 243 SRAREIFDELSKLGKDMK----VSTLNAMLE-----------AYCMNGLPTEADLLFENS 287
           + A  +   +   G +      +S +  +LE             C+     E D++ E  
Sbjct: 689 NSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELL 748

Query: 288 HNM---GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ-NGIVPNKRFF 334
             M   GVTP++ +Y+ L     +     + +K+   M+Q  GI P++  F
Sbjct: 749 EKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVF 799



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 151/345 (43%), Gaps = 28/345 (8%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +Q+  I +  +Y+ LI    K G+   A  +  +M +  C P+   +NALI    H    
Sbjct: 524 EQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALI----HGLCT 579

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L +A    +KM  ++  +P + T  IL+    +  + D     F+++  S   PD +
Sbjct: 580 DGKLKEATLLEEKMVKIDL-QPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAH 638

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY   +  Y + G +++ E ++++MK N   PD+ T++ LI  YG     +    V K +
Sbjct: 639 TYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRM 698

Query: 183 MHSKEKPTLPTFNSMI-----INYGKAR--------LQGKAEY-----VFQKMTAMKYTP 224
             +  +P+  TF S+I     + YGK +        +    E+     + +KM     TP
Sbjct: 699 HDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTP 758

Query: 225 SFITYECIITMYGYCD--NVSRAREIFDEL-SKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
           +  +YE +  M G C+  N+  A ++FD +  K G        NA+L   C      EA 
Sbjct: 759 NAKSYEKL--MLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAA 816

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
            + ++   +G  P   + K+L     K   KE    + + + Q G
Sbjct: 817 KVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQCG 861



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 113/256 (44%)

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
           I  YN LL + A+   VD++  ++ E+ E  + P+IYTYN +++ Y K G ++E    +S
Sbjct: 183 IGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVS 242

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
            +      PD  T+  LI  Y +R+  D   +VFK +     +     +  +I      R
Sbjct: 243 MIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVER 302

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
              +A  +F KM      P+  TY  +I      +  S A  +  E+ + G    + T  
Sbjct: 303 RIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYT 362

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            ++++ C      +A  L       G+ P+  TY  L   Y K  M E    +++ ME  
Sbjct: 363 VLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESR 422

Query: 326 GIVPNKRFFLEALETF 341
            + PN R + E ++ +
Sbjct: 423 NLRPNTRTYNELIKGY 438



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 4/190 (2%)

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
           I  +N L++S  +    D+M+QV+  ++  K  P + T+N M+  Y K     +A     
Sbjct: 183 IGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVS 242

Query: 216 KMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
            +      P F TY  +I   GYC   ++  A ++F E+   G          ++   C+
Sbjct: 243 MIVEAGLDPDFFTYTSLIM--GYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCV 300

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
                EA  LF    +    P   TY +L KA   +  K     L+K ME+ GI PN   
Sbjct: 301 ERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHT 360

Query: 334 FLEALETFSS 343
           +   +++  S
Sbjct: 361 YTVLIDSLCS 370



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 105/269 (39%), Gaps = 23/269 (8%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+     D   YS LI   G  G+T  A  +   M ++GC P    + +LI   L  +  
Sbjct: 664 KENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMK-- 721

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
                     + K+KG E   P +   + ++         D V  L +++ E  + P+  
Sbjct: 722 ----------YGKVKGGE---PGVCVMSNMME-------FDIVVELLEKMVEHGVTPNAK 761

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           +Y  +M    + G ++  E V   M+  +   P  + FN L+    K +  ++  +V   
Sbjct: 762 SYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDD 821

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++     P L +   +I    K   + +   VFQ +    Y    + ++ II   G    
Sbjct: 822 MICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGL 881

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEA 270
           V    E+F+ + K G      T + ++E 
Sbjct: 882 VEAFYELFNVMEKNGCTFSSQTYSLLIEG 910


>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
 gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
          Length = 961

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 164/356 (46%), Gaps = 27/356 (7%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN--------SGCRPDPSVYNALIT 54
           KQ  Y  D+   + L+  + K+G  + A+ +F  +RN        S C  D   Y  +I+
Sbjct: 227 KQGLYYLDSSAMAALLKELAKQGYLKRAVEIFDWLRNLEPSHELSSLC--DLYTYTTMIS 284

Query: 55  ---AHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE 111
              +H   R   + +A+      + +G++ C  N+ TY+ L+  C +A  +D    ++K+
Sbjct: 285 QCGSHQQLRRALELVAE-----MRSRGID-C--NVHTYSALMNVCIKANELDLAQDVYKQ 336

Query: 112 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171
           + E   +P++ TYN ++D Y K    +E   VL  ++    + ++ T+N +I +  K   
Sbjct: 337 MLEEGCSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQ 396

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
            ++  +V++ ++ +  KP+  T+ ++I  YGK     KA  +F+ M       + ITY  
Sbjct: 397 PEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSS 456

Query: 232 IITMYGYCDNVSR---AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
           +I+    C+   R   A E+F ++ K      V T N+++ A    G   +A  LFE   
Sbjct: 457 LISA---CEKAGRWEMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQ 513

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             G  PDS TY  L  AY +        K  ++M+  G  P+   F   +E    S
Sbjct: 514 TQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQTQGCHPDAAVFNSLMEVLWQS 569



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 142/304 (46%), Gaps = 5/304 (1%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ +I+  G   Q R A+ L +EMR+ G   +   Y+AL+   +    KA  L 
Sbjct: 273 LCDLYTYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCI----KANELD 328

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            A   +++M   E C PN+VTYNIL+    +    ++   +   L +  +  ++ TYN V
Sbjct: 329 LAQDVYKQMLE-EGCSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTV 387

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           + A  K+G  ++   V  +M +   KP   T+  LI +YGK+   +K  ++F+ ++    
Sbjct: 388 ISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGC 447

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +  + T++S+I    KA     A  +F KM      P+ +T+  +I    +  +  +A E
Sbjct: 448 ERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASE 507

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F+++   G      T   ++ AY   G    A   FE     G  PD++ +  L +   
Sbjct: 508 LFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQTQGCHPDAAVFNSLMEVLW 567

Query: 308 KANM 311
           ++ +
Sbjct: 568 QSGV 571


>gi|403366299|gb|EJY82949.1| hypothetical protein OXYTRI_19434 [Oxytricha trifallax]
          Length = 1420

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 164/344 (47%), Gaps = 24/344 (6%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTR----------LAMWLFSEMR--NSGCRPDPSVYN 50
           +Q   + D   YS LI  +  + Q++           A  L  +M+  N G +PD  +YN
Sbjct: 646 QQNNIVPDNFTYSTLIKGIRAENQSQNGISNPMDLEKAFALLEQMKQSNGGVKPDEILYN 705

Query: 51  ALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFK 110
            LI A +   D    + +A+  FQ+M+     KP+ VTY IL++A   A  +D    +FK
Sbjct: 706 CLIDACVRFHD----VNRAVAVFQEMQ-FSNIKPSSVTYGILIKAYGSANQLDNAFFVFK 760

Query: 111 ELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170
           ++ ++ L P+  TY  ++DA  KN  I+    V   MK +  + + I F  LI  + K  
Sbjct: 761 KMKDNCLIPNSVTYGCLIDACVKNNQIERAMEVFETMKRDGVQLNTIIFTTLIKGFAKSF 820

Query: 171 AFDKMEQVFKSL-MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM-TAMKYT-PSFI 227
             D+  +V++ + M  K KP   TFNS+I    +     KA  +F++M   + +T P  I
Sbjct: 821 KLDQALEVYQIMKMDDKIKPNNVTFNSLIDCCIRCNSIKKAMEIFEEMKQPISHTKPDLI 880

Query: 228 TYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
           TY  +I   G+C   N+ +A  + +++ K          N++L+  C       A  +++
Sbjct: 881 TYSTMIK--GFCREKNIQQALIMLNDMEKNNIMADEVLYNSLLDGCCKANEIEMALKVYK 938

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           N   + + P + TY +L K Y K         +L+ M+++GI P
Sbjct: 939 NMEILKIKPSNVTYSILIKIYGKQRNLPKALGVLEEMKKDGIRP 982



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 151/327 (46%), Gaps = 12/327 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK-------AL 66
           Y+ LI    +  +   A  L SEM+ +   PD   Y+ LI   +   ++++        L
Sbjct: 622 YNSLIDACVRCNRLNSAWQLLSEMQQNNIVPDNFTYSTLIKG-IRAENQSQNGISNPMDL 680

Query: 67  AKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
            KA    ++MK      KP+ + YN L+ AC +  +V++  A+F+E+  S + P   TY 
Sbjct: 681 EKAFALLEQMKQSNGGVKPDEILYNCLIDACVRFHDVNRAVAVFQEMQFSNIKPSSVTYG 740

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++ AYG    +     V  +MK N   P+ +T+  LID+  K    ++  +VF+++   
Sbjct: 741 ILIKAYGSANQLDNAFFVFKKMKDNCLIPNSVTYGCLIDACVKNNQIERAMEVFETMKRD 800

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT-AMKYTPSFITYECIITMYGYCDNVSR 244
             +     F ++I  + K+    +A  V+Q M    K  P+ +T+  +I     C+++ +
Sbjct: 801 GVQLNTIIFTTLIKGFAKSFKLDQALEVYQIMKMDDKIKPNNVTFNSLIDCCIRCNSIKK 860

Query: 245 AREIFDELSKLGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           A EIF+E+ +     K  + T + M++ +C      +A ++  +     +  D   Y  L
Sbjct: 861 AMEIFEEMKQPISHTKPDLITYSTMIKGFCREKNIQQALIMLNDMEKNNIMADEVLYNSL 920

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
                KAN  E+  K+ K ME   I P
Sbjct: 921 LDGCCKANEIEMALKVYKNMEILKIKP 947



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 122/256 (47%), Gaps = 6/256 (2%)

Query: 3    KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
            K    I ++  Y  LI    K  Q   AM +F  M+  G + +  ++  LI        K
Sbjct: 763  KDNCLIPNSVTYGCLIDACVKNNQIERAMEVFETMKRDGVQLNTIIFTTLIKGFA----K 818

Query: 63   AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI--LAPD 120
            +  L +AL  +Q MK  ++ KPN VT+N L+  C +  ++ +   +F+E+ + I    PD
Sbjct: 819  SFKLDQALEVYQIMKMDDKIKPNNVTFNSLIDCCIRCNSIKKAMEIFEEMKQPISHTKPD 878

Query: 121  IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            + TY+ ++  + +   I++   +L+ M+ N    D + +N L+D   K    +   +V+K
Sbjct: 879  LITYSTMIKGFCREKNIQQALIMLNDMEKNNIMADEVLYNSLLDGCCKANEIEMALKVYK 938

Query: 181  SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++   K KP+  T++ +I  YGK R   KA  V ++M      P  I Y C++       
Sbjct: 939  NMEILKIKPSNVTYSILIKIYGKQRNLPKALGVLEEMKKDGIRPGLIVYTCLLQTCIKSR 998

Query: 241  NVSRAREIFDELSKLG 256
             +  A ++F ++   G
Sbjct: 999  QLKTAEQLFHDMRIQG 1014



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 147/391 (37%), Gaps = 95/391 (24%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ + S M+  G +PD  +YN++I        K   +AKA   + +M G E   P  +T+
Sbjct: 385 ALNVLSIMKERGIKPDEVLYNSIIDG----CSKNNQIAKAFLLYDEMLG-EGVTPTTITF 439

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL----S 145
           N L+  C ++ N DQ   + +++ E  + PD YTY+ +          +++E        
Sbjct: 440 NSLIDCCVRSGNQDQAWRVLEQMKEKQVKPDNYTYSTLFKGIKSENQRQDLEKAFVLYNQ 499

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM---------------------- 183
              SN   PD I FN+L+D+    +  D+  ++FK L                       
Sbjct: 500 LQNSNDFTPDEILFNVLLDACINCKQLDRAVELFKQLKPQSQPQIQVSNTDDADNSLSLE 559

Query: 184 -----------------HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
                            H   +P   +FN++I    + +    A  +F  M      P+ 
Sbjct: 560 DSPDSAKNAPAVVNSSNHHFMRPDEISFNTIIKGCAQEKKLQLAFEMFNLMKMQCLKPND 619

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSK---LGKDMKVSTL--NAMLEAYCMNGLPTEAD 281
           +TY  +I     C+ ++ A ++  E+ +   +  +   STL      E    NG+    D
Sbjct: 620 VTYNSLIDACVRCNRLNSAWQLLSEMQQNNIVPDNFTYSTLIKGIRAENQSQNGISNPMD 679

Query: 282 L-----LFEN--SHNMGVTPD-----------------------------------SSTY 299
           L     L E     N GV PD                                   S TY
Sbjct: 680 LEKAFALLEQMKQSNGGVKPDEILYNCLIDACVRFHDVNRAVAVFQEMQFSNIKPSSVTY 739

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +L KAY  AN  +    + K+M+ N ++PN
Sbjct: 740 GILIKAYGSANQLDNAFFVFKKMKDNCLIPN 770



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 77/392 (19%), Positives = 154/392 (39%), Gaps = 54/392 (13%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T  ++ LI    + G    A  +  +M+    +PD   Y+ L    + + ++ + L KA 
Sbjct: 436 TITFNSLIDCCVRSGNQDQAWRVLEQMKEKQVKPDNYTYSTLFKG-IKSENQRQDLEKAF 494

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL------------------ 112
             + +++      P+ + +N+LL AC   + +D+   LFK+L                  
Sbjct: 495 VLYNQLQNSNDFTPDEILFNVLLDACINCKQLDRAVELFKQLKPQSQPQIQVSNTDDADN 554

Query: 113 ---------------------HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151
                                +   + PD  ++N ++    +   ++    + + MK   
Sbjct: 555 SLSLEDSPDSAKNAPAVVNSSNHHFMRPDEISFNTIIKGCAQEKKLQLAFEMFNLMKMQC 614

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA- 210
            KP+ +T+N LID+  +    +   Q+   +  +   P   T++++I    +A  Q +  
Sbjct: 615 LKPNDVTYNSLIDACVRCNRLNSAWQLLSEMQQNNIVPDNFTYSTLIKGI-RAENQSQNG 673

Query: 211 -------EYVFQKMTAMKYT-----PSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 258
                  E  F  +  MK +     P  I Y C+I       +V+RA  +F E+      
Sbjct: 674 ISNPMDLEKAFALLEQMKQSNGGVKPDEILYNCLIDACVRFHDVNRAVAVFQEMQFSNIK 733

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
               T   +++AY        A  +F+   +  + P+S TY  L  A  K N  E   ++
Sbjct: 734 PSSVTYGILIKAYGSANQLDNAFFVFKKMKDNCLIPNSVTYGCLIDACVKNNQIERAMEV 793

Query: 319 LKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
            + M+++G+  N   F   ++ F+ S    Q+
Sbjct: 794 FETMKRDGVQLNTIIFTTLIKGFAKSFKLDQA 825



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/358 (20%), Positives = 141/358 (39%), Gaps = 93/358 (25%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTR---LAMWLFSEMRNSG-CRPDPSVYNALITAHLH 58
           K++    D   YS L   +  + Q +    A  L+++++NS    PD  ++N L+ A ++
Sbjct: 463 KEKQVKPDNYTYSTLFKGIKSENQRQDLEKAFVLYNQLQNSNDFTPDEILFNVLLDACIN 522

Query: 59  TRDKAKALAKALGYFQKMKGMER------------------------------------- 81
                K L +A+  F+++K   +                                     
Sbjct: 523 ----CKQLDRAVELFKQLKPQSQPQIQVSNTDDADNSLSLEDSPDSAKNAPAVVNSSNHH 578

Query: 82  -CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA---------- 130
             +P+ +++N +++ CAQ + +     +F  +    L P+  TYN ++DA          
Sbjct: 579 FMRPDEISFNTIIKGCAQEKKLQLAFEMFNLMKMQCLKPNDVTYNSLIDACVRCNRLNSA 638

Query: 131 ------------------------------YGKNGMIKEME-----SVLSRMKSNQ--CK 153
                                           +NG+   M+     ++L +MK +    K
Sbjct: 639 WQLLSEMQQNNIVPDNFTYSTLIKGIRAENQSQNGISNPMDLEKAFALLEQMKQSNGGVK 698

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           PD I +N LID+  +    ++   VF+ +  S  KP+  T+  +I  YG A     A +V
Sbjct: 699 PDEILYNCLIDACVRFHDVNRAVAVFQEMQFSNIKPSSVTYGILIKAYGSANQLDNAFFV 758

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
           F+KM      P+ +TY C+I      + + RA E+F+ + + G  +       +++ +
Sbjct: 759 FKKMKDNCLIPNSVTYGCLIDACVKNNQIERAMEVFETMKRDGVQLNTIIFTTLIKGF 816



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 110/226 (48%), Gaps = 6/226 (2%)

Query: 10   DTGIYSKLIAVMGKKGQTRLAMWLFSEMR-NSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            +T I++ LI    K  +   A+ ++  M+ +   +P+   +N+LI   +    +  ++ K
Sbjct: 805  NTIIFTTLIKGFAKSFKLDQALEVYQIMKMDDKIKPNNVTFNSLIDCCI----RCNSIKK 860

Query: 69   ALGYFQKMKG-MERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            A+  F++MK  +   KP+++TY+ +++   + +N+ Q   +  ++ ++ +  D   YN +
Sbjct: 861  AMEIFEEMKQPISHTKPDLITYSTMIKGFCREKNIQQALIMLNDMEKNNIMADEVLYNSL 920

Query: 128  MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
            +D   K   I+    V   M+  + KP  +T+++LI  YGK++   K   V + +     
Sbjct: 921  LDGCCKANEIEMALKVYKNMEILKIKPSNVTYSILIKIYGKQRNLPKALGVLEEMKKDGI 980

Query: 188  KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
            +P L  +  ++    K+R    AE +F  M         +TY+ +I
Sbjct: 981  RPGLIVYTCLLQTCIKSRQLKTAEQLFHDMRIQGIRGDQLTYQTMI 1026



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 117/312 (37%), Gaps = 79/312 (25%)

Query: 62  KAKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           +A+ L +AL     MK  ER  KP+ V YN ++  C++   + +   L+ E+    + P 
Sbjct: 378 RAQRLPQALNVLSIMK--ERGIKPDEVLYNSIIDGCSKNNQIAKAFLLYDEMLGEGVTPT 435

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL---IDSYGKRQAFDKMEQ 177
             T+N ++D   ++G   +   VL +MK  Q KPD  T++ L   I S  +RQ  +K   
Sbjct: 436 TITFNSLIDCCVRSGNQDQAWRVLEQMKEKQVKPDNYTYSTLFKGIKSENQRQDLEKAFV 495

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           ++  L +S +                                  +TP  I +  ++    
Sbjct: 496 LYNQLQNSND----------------------------------FTPDEILFNVLLDACI 521

Query: 238 YCDNVSRAREIFDELSKLGK-DMKVSTLNAMLEAYCMNGLPTEA---------------- 280
            C  + RA E+F +L    +  ++VS  +    +  +   P  A                
Sbjct: 522 NCKQLDRAVELFKQLKPQSQPQIQVSNTDDADNSLSLEDSPDSAKNAPAVVNSSNHHFMR 581

Query: 281 -------------------DLLFENSHNMG---VTPDSSTYKLLYKAYTKANMKELVQKL 318
                               L FE  + M    + P+  TY  L  A  + N      +L
Sbjct: 582 PDEISFNTIIKGCAQEKKLQLAFEMFNLMKMQCLKPNDVTYNSLIDACVRCNRLNSAWQL 641

Query: 319 LKRMEQNGIVPN 330
           L  M+QN IVP+
Sbjct: 642 LSEMQQNNIVPD 653



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 8/185 (4%)

Query: 158 TFNLLIDSYGKRQAFDKMEQVF-KSLMHSKEKPT---LPTFNSMIINYGKARLQGKAEYV 213
           T N ++DS  K + F++ EQ++ K    SK++P    + TF+ MI  Y +A+   +A  V
Sbjct: 329 TVNQMLDSLLKAELFEEAEQIYNKVFTLSKDQPNCMDMMTFSCMIKGYCRAQRLPQALNV 388

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
              M      P  + Y  II      + +++A  ++DE+   G      T N++++    
Sbjct: 389 LSIMKERGIKPDEVLYNSIIDGCSKNNQIAKAFLLYDEMLGEGVTPTTITFNSLIDCCVR 448

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ----NGIVP 329
           +G   +A  + E      V PD+ TY  L+K     N ++ ++K      Q    N   P
Sbjct: 449 SGNQDQAWRVLEQMKEKQVKPDNYTYSTLFKGIKSENQRQDLEKAFVLYNQLQNSNDFTP 508

Query: 330 NKRFF 334
           ++  F
Sbjct: 509 DEILF 513



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 84/177 (47%), Gaps = 5/177 (2%)

Query: 10   DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
            D   YS +I    ++   + A+ + ++M  +    D  +YN+L+        KA  +  A
Sbjct: 878  DLITYSTMIKGFCREKNIQQALIMLNDMEKNNIMADEVLYNSLLDGCC----KANEIEMA 933

Query: 70   LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            L  ++ M+ + + KP+ VTY+IL++   + RN+ +   + +E+ +  + P +  Y  ++ 
Sbjct: 934  LKVYKNMEIL-KIKPSNVTYSILIKIYGKQRNLPKALGVLEEMKKDGIRPGLIVYTCLLQ 992

Query: 130  AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
               K+  +K  E +   M+    + D +T+  +I+     Q FD +  + K    SK
Sbjct: 993  TCIKSRQLKTAEQLFHDMRIQGIRGDQLTYQTMINGCLYSQKFDSILILLKDASDSK 1049



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 86/210 (40%), Gaps = 34/210 (16%)

Query: 25  GQTRLAMWLFSEMRN-SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK 83
            QT+ A+  F +++  S  + DP+ Y   +   L +  KA+   +A   + K+  + + +
Sbjct: 302 NQTQTALQYFHQLQQTSQAQNDPTYYQT-VNQMLDSLLKAELFEEAEQIYNKVFTLSKDQ 360

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           PN +                                D+ T++ ++  Y +   + +  +V
Sbjct: 361 PNCM--------------------------------DMMTFSCMIKGYCRAQRLPQALNV 388

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           LS MK    KPD + +N +ID   K     K   ++  ++     PT  TFNS+I    +
Sbjct: 389 LSIMKERGIKPDEVLYNSIIDGCSKNNQIAKAFLLYDEMLGEGVTPTTITFNSLIDCCVR 448

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           +  Q +A  V ++M   +  P   TY  + 
Sbjct: 449 SGNQDQAWRVLEQMKEKQVKPDNYTYSTLF 478


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 150/342 (43%), Gaps = 15/342 (4%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M++Q        +Y+  +  + K G+   AM +   M++  C+PD   +N LI       
Sbjct: 44  MEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLC--- 100

Query: 61  DKAKALAKALGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
            KA  L +A    Q +  MER     N+VTYN L+   + A    +   + + +  +   
Sbjct: 101 -KAGRLDEAQ---QVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTT--- 153

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQ 177
           PD  TYN ++  + K+G I      L  MK    C PD  T+++LI+   K     K ++
Sbjct: 154 PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADE 213

Query: 178 VFKSLMHSKEK-PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           + + ++  K+   ++  FN+++  Y KA+   +A  +   M      P  +TY  II   
Sbjct: 214 LLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGL 273

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
             C +V +   + +++   G    V T   ++   C  G   EA  L +     G TP++
Sbjct: 274 CRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNA 333

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
            TY L++    K +  ++   LL  +   G + +   F EAL
Sbjct: 334 VTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVAF-EAL 374



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 144/324 (44%), Gaps = 11/324 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEM-RNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           D   Y  L+      G+ + AM L  EM +  G  P PS+YN  +    H   K+  + +
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFV----HALCKSGKVPE 72

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A+   + MK    CKP++VT+N L+    +A  +D+   +  E+  S  A ++ TYN ++
Sbjct: 73  AMEVVKNMKD-GACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLI 131

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL-MHSKE 187
           +     G   E   V+  M +    PD  T+N +I  + K    D+     + +   +  
Sbjct: 132 NGLSSAGRSGEAVLVMQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGC 188

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSFITYECIITMYGYCDNVSRAR 246
            P   T++ +I    K+    KA+ + Q+M   K    S + +  ++  Y    ++ RAR
Sbjct: 189 SPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRAR 248

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+   + + G    V T + +++  C  G   +   L E   + G  PD  TY +L    
Sbjct: 249 ELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGL 308

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            KA       +L+KRM ++G  PN
Sbjct: 309 CKAGKMVEACRLVKRMLEDGCTPN 332



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 122/267 (45%), Gaps = 8/267 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++  + A+   Y+ LI  +   G++  A+ +   M  +   PD   YNA+I    H   K
Sbjct: 116 ERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTT---PDTQTYNAII----HGFCK 168

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE-LHESILAPDI 121
           +  + +A G+ ++MK    C P+  TY+IL+    ++ N+ + + L +E +        +
Sbjct: 169 SGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASV 228

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
             +N ++D Y K   +     +LS M  + C PD++T++ +ID   +    DK   + + 
Sbjct: 229 VAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEK 288

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++    KP + T+  ++    KA    +A  + ++M     TP+ +TY  +       D 
Sbjct: 289 MVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDK 348

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAML 268
           +  A ++   +   G+   V    A+L
Sbjct: 349 LDMANDLLTSIRDKGRITDVVAFEALL 375



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 102/239 (42%), Gaps = 35/239 (14%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRN-SGCRPDPSVYNALITAHLHTRDKAKA--- 65
           DT  Y+ +I    K G+   A     EM+  +GC PD   Y+ LI     + +  KA   
Sbjct: 155 DTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADEL 214

Query: 66  LAKALGY----------------FQKMKGMER------------CKPNIVTYNILLRACA 97
           L + +G                 + K + ++R            C P++VTY+ ++    
Sbjct: 215 LQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLC 274

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           +  +VD+  AL +++      PD+ TY  ++    K G + E   ++ RM  + C P+ +
Sbjct: 275 RCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAV 334

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           T++L+ D   K    D    +  S+        +  F +++++  K RL  +A   FQK
Sbjct: 335 TYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEALLLSV-KKRLLDRA--AFQK 390


>gi|302821471|ref|XP_002992398.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
 gi|300139814|gb|EFJ06548.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
          Length = 698

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 146/331 (44%), Gaps = 11/331 (3%)

Query: 8   IADTGI------YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           + DTG+      Y  LI    + G       L+ EMR+   RP+  +Y  +IT +  T  
Sbjct: 343 LRDTGMSINKITYCLLIDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMITIYRDTGQ 402

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             K + K L   Q+        P+   YN+++    + R ++Q    F ++ +  + PD+
Sbjct: 403 WQKGV-KLLREMQQAG----VTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDV 457

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            ++N ++DA  K G   E   +  +M ++ C P   TFN++I   G+ + ++ + ++ + 
Sbjct: 458 VSWNSLIDACCKAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEE 517

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           +      P + T+ +++  Y +ARL   A    Q M      PS   Y  +   Y     
Sbjct: 518 MRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPTAYSALANAYAQLGM 577

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
             +   +   + K   ++ ++ LN ++ A+ M G   EA  +FE     G+T D  TY  
Sbjct: 578 CEQTLHVLQTMEKENIEINLAMLNLLINAFSMAGRSQEAFAVFEYIKEAGLTADKITYTT 637

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
           L KA  +A   + V  +   M + G  P+ +
Sbjct: 638 LMKALIRAEKLDEVSGVFDEMIKAGCRPDGK 668



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 146/328 (44%), Gaps = 15/328 (4%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-----LHTRDK 62
           +AD   Y  L+  +GK G+T  A  L  EM+  G RP+   YN L+  +     L   D 
Sbjct: 279 VADRDSYISLMLSLGKHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDT 338

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K L +  G             N +TY +L+ A A+A  +D++ AL++E+ +  + P+ Y
Sbjct: 339 VKTLLRDTGM----------SINKITYCLLIDAYARAGLMDRLEALYQEMRDCDIRPNTY 388

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            Y  ++  Y   G  ++   +L  M+     PD   +N++I+++G+ +  ++    F  +
Sbjct: 389 MYARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFFKM 448

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++NS+I    KA    +A  ++ KM      P+  T+  +I   G     
Sbjct: 449 QDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGEHKRW 508

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           +   E+ +E+   G    V T   +++ Y    L  +A    +     G+ P  + Y  L
Sbjct: 509 NDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPTAYSAL 568

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
             AY +  M E    +L+ ME+  I  N
Sbjct: 569 ANAYAQLGMCEQTLHVLQTMEKENIEIN 596



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 135/298 (45%), Gaps = 5/298 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF EM+  G + D  VYN LI A      +A    + + + +K++            +++
Sbjct: 234 LFQEMQAEGVQVDGKVYNDLIFAC----GQAHKPNEGMFFLEKLQASGLVADRDSYISLM 289

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           L      R   +  AL +E+    L P++  YN ++  Y + G ++++++V + ++    
Sbjct: 290 LSLGKHGRTA-EAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDTVKTLLRDTGM 348

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
             + IT+ LLID+Y +    D++E +++ +     +P    +  MI  Y       K   
Sbjct: 349 SINKITYCLLIDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMITIYRDTGQWQKGVK 408

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           + ++M     TP    Y  II  +G    + +AR  F ++   G +  V + N++++A C
Sbjct: 409 LLREMQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACC 468

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             G P EA  L+    N G  P + T+ ++     +      V ++++ M   G+ PN
Sbjct: 469 KAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPN 526



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 90/209 (43%), Gaps = 3/209 (1%)

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS--YGKRQAFDKMEQVFKS 181
           YN ++ AY +N    +    LS+MK+    PD++++  +I +  +G    +    ++F+ 
Sbjct: 179 YNALVGAYAQNRDYGKALETLSKMKTLGFPPDVVSYTHVIQACRHGVVDIYTGF-RLFQE 237

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           +     +     +N +I   G+A    +  +  +K+ A        +Y  ++   G    
Sbjct: 238 MQAEGVQVDGKVYNDLIFACGQAHKPNEGMFFLEKLQASGLVADRDSYISLMLSLGKHGR 297

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
            + A  + +E+   G    +   N +L  Y   G   + D +     + G++ +  TY L
Sbjct: 298 TAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINKITYCL 357

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           L  AY +A + + ++ L + M    I PN
Sbjct: 358 LIDAYARAGLMDRLEALYQEMRDCDIRPN 386



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 90/217 (41%), Gaps = 7/217 (3%)

Query: 142 SVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
            +L  ++ N  C+   +  +++I  YG+ +   K  +V + L  + ++     +N+++  
Sbjct: 129 ELLEWLRENSFCRTYDVLDSVVIHGYGRERKLHKALEVAEKLGSNLQRRG---YNALVGA 185

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM--YGYCDNVSRAREIFDELSKLGKD 258
           Y + R  GKA     KM  + + P  ++Y  +I    +G  D  +  R +F E+   G  
Sbjct: 186 YAQNRDYGKALETLSKMKTLGFPPDVVSYTHVIQACRHGVVDIYTGFR-LFQEMQAEGVQ 244

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
           +     N ++ A      P E     E     G+  D  +Y  L  +  K       + L
Sbjct: 245 VDGKVYNDLIFACGQAHKPNEGMFFLEKLQASGLVADRDSYISLMLSLGKHGRTAEAEAL 304

Query: 319 LKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKT 355
           L+ M+  G+ PN + +   L  +S      Q  + KT
Sbjct: 305 LEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDTVKT 341


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 138/319 (43%), Gaps = 9/319 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  L+  + K G T  A+ L   M    CRP+   YN +I +      K + + +A
Sbjct: 216 DVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLC----KDRQVTEA 271

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F +M  KG+    P+I TYN L+ A         V  L  E+  S + P++  ++ V
Sbjct: 272 FNLFSEMITKGIS---PDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTV 328

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +DA  K GMI     V+  M     +PD++T+  L+D +  R   D+  +VF +++H   
Sbjct: 329 VDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGC 388

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P + ++N +I  Y + +   KA  + ++M+        +TY  +I    +   +  A  
Sbjct: 389 VPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIA 448

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F E+   G+   + T   +L+  C N    EA +L +      +  D   Y +      
Sbjct: 449 LFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMC 508

Query: 308 KANMKELVQKLLKRMEQNG 326
           +A   E  + L   +   G
Sbjct: 509 RAGELEAARDLFSNLSCQG 527



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 136/317 (42%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++KL+  + K       + L ++M + G  PD    N LI +  H R     L  A    
Sbjct: 115 FTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLR----RLGYAFSVL 170

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+  +  C+P+  T+N L+R       + +   LF +       PD+ TY  +M+   K
Sbjct: 171 AKLLKLG-CQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCK 229

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G       +L  M    C+P++I +N +IDS  K +   +   +F  ++     P + T
Sbjct: 230 VGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFT 289

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS+I              +  +M   K  P+ + +  ++        ++ A ++ D + 
Sbjct: 290 YNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMI 349

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           K G +  V T  A+++ +C+     EA  +F+   + G  P+  +Y +L   Y +    +
Sbjct: 350 KRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMD 409

Query: 314 LVQKLLKRMEQNGIVPN 330
               LL++M   G++ +
Sbjct: 410 KAMGLLEQMSLQGLIAD 426



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 130/303 (42%), Gaps = 9/303 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A  + +++   GC+PD + +N LI   L    K   + +AL  F K  G E  +P++VTY
Sbjct: 166 AFSVLAKLLKLGCQPDNTTFNTLIRG-LCVEGK---IGEALHLFDKTIG-EGFQPDVVTY 220

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
             L+    +  N      L + + +    P++  YN ++D+  K+  + E  ++ S M +
Sbjct: 221 GTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMIT 280

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
               PDI T+N LI +      +  +  +   +++SK  P +  F++++    K  +   
Sbjct: 281 KGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAI 340

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAM 267
           A  V   M      P  +TY  +  M G+C    +  A ++FD +   G    V + N +
Sbjct: 341 AHDVVDMMIKRGVEPDVVTYTAL--MDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNIL 398

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +  YC      +A  L E     G+  D+ TY  L          +    L   M  +G 
Sbjct: 399 INGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQ 458

Query: 328 VPN 330
           +P+
Sbjct: 459 IPD 461



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 113/253 (44%), Gaps = 8/253 (3%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P++ T NIL+ +    R +    ++  +L +    PD  T+N ++      G I E   +
Sbjct: 145 PDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHL 204

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
             +      +PD++T+  L++   K        ++ +S++    +P +  +N++I +  K
Sbjct: 205 FDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCK 264

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL--GKDM-K 260
            R   +A  +F +M     +P   TY  +I  +  C N+   + +   L+++   K M  
Sbjct: 265 DRQVTEAFNLFSEMITKGISPDIFTYNSLI--HALC-NLCEWKHVTTLLNEMVNSKIMPN 321

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT-KANMKELVQKLL 319
           V   + +++A C  G+   A  + +     GV PD  TY  L   +  ++ M E V K+ 
Sbjct: 322 VVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAV-KVF 380

Query: 320 KRMEQNGIVPNKR 332
             M   G VPN R
Sbjct: 381 DTMVHKGCVPNVR 393



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 109/265 (41%), Gaps = 1/265 (0%)

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L  AL  F +M  M    P+ V +  LL + A+ ++   V +L  ++    + PD+YT N
Sbjct: 93  LDDALSSFNRMLHMHP-PPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLN 151

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            +++++     +    SVL+++    C+PD  TFN LI          +   +F   +  
Sbjct: 152 ILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGE 211

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
             +P + T+ +++    K      A  + + M      P+ I Y  II        V+ A
Sbjct: 212 GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEA 271

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             +F E+   G    + T N+++ A C          L     N  + P+   +  +  A
Sbjct: 272 FNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDA 331

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
             K  M  +   ++  M + G+ P+
Sbjct: 332 LCKEGMIAIAHDVVDMMIKRGVEPD 356



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 5/182 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  +R    D   Y+ L+     + +   A+ +F  M + GC P+   YN LI  +    
Sbjct: 347 MMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYC--- 403

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            + + + KA+G  ++M  ++    + VTYN L+        +    ALF E+  S   PD
Sbjct: 404 -QIQRMDKAMGLLEQMS-LQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPD 461

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TY  ++D   KN  + E   +L  ++ +    DI+ +N+ ID   +    +    +F 
Sbjct: 462 LVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFS 521

Query: 181 SL 182
           +L
Sbjct: 522 NL 523



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 87/203 (42%), Gaps = 7/203 (3%)

Query: 137 IKEMESVLS---RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +K   +VLS   +M S    PD+ T N+LI+S+   +       V   L+    +P   T
Sbjct: 125 MKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTT 184

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDE 251
           FN++I         G+A ++F K     + P  +TY  +  M G C   N S A  +   
Sbjct: 185 FNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTL--MNGLCKVGNTSAAIRLLRS 242

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + +      V   N ++++ C +   TEA  LF      G++PD  TY  L  A      
Sbjct: 243 MVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCE 302

Query: 312 KELVQKLLKRMEQNGIVPNKRFF 334
            + V  LL  M  + I+PN   F
Sbjct: 303 WKHVTTLLNEMVNSKIMPNVVVF 325



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 93/212 (43%), Gaps = 9/212 (4%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           ++S ++  + K+G   +A  +   M   G  PD   Y AL+  H    +    + +A+  
Sbjct: 324 VFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSE----MDEAVKV 379

Query: 73  FQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           F  M  KG   C PN+ +YNIL+    Q + +D+   L +++    L  D  TYN ++  
Sbjct: 380 FDTMVHKG---CVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHG 436

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
               G ++   ++   M ++   PD++T+ +L+D   K     +   + K++  S     
Sbjct: 437 LCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDAD 496

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           +  +N  I    +A     A  +F  ++   +
Sbjct: 497 ILVYNIAIDGMCRAGELEAARDLFSNLSCQGF 528


>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
 gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
 gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 140/307 (45%), Gaps = 5/307 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI V+   GQ  LA    ++M   GC P+    ++L+           AL     + 
Sbjct: 284 YSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDL---WN 340

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           Q ++G    +PN+V YN L++      N+ +  ++F  + E   +P+I TY  +++ + K
Sbjct: 341 QMIRGFGL-QPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAK 399

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +     + ++M ++ C P+++ +  ++++  +   F + E + + +      P++PT
Sbjct: 400 RGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPT 459

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAM-KYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           FN+ I     A     AE VF++M    +  P+ +TY  ++      + +  A  +  E+
Sbjct: 460 FNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREI 519

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G +   ST N +L   C  GLP  A  L       G +PD  T  ++  AY K    
Sbjct: 520 FMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKA 579

Query: 313 ELVQKLL 319
           E   ++L
Sbjct: 580 ERAAQML 586



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 137/319 (42%), Gaps = 15/319 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLHTRDKAKALAKALG 71
           Y+ L+  + K  +   A  L  EM N GC PD   Y  +I++   +    + + LA    
Sbjct: 184 YNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELA---- 239

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
                   ER +P +  YN L+    +  +      L +E+ E  ++P++ +Y+ +++  
Sbjct: 240 --------ERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVL 291

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLI-DSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             +G I+   S L++M    C P+I T + L+   + +   FD ++   + +     +P 
Sbjct: 292 CNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPN 351

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           +  +N+++  +       KA  VF  M  +  +P+  TY  +I  +    ++  A  I++
Sbjct: 352 VVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWN 411

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           ++   G    V     M+EA C +    EA+ L E        P   T+    K    A 
Sbjct: 412 KMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAG 471

Query: 311 MKELVQKLLKRMEQNGIVP 329
             +  +K+ ++MEQ    P
Sbjct: 472 RLDWAEKVFRQMEQQHRCP 490



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 127/296 (42%), Gaps = 8/296 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+      G    A+ +FS M   GC P+   Y +LI        K  +L  A+  +
Sbjct: 355 YNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGF----AKRGSLDGAVYIW 410

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM     C PN+V Y  ++ A  +     +  +L + + +   AP + T+N  +     
Sbjct: 411 NKML-TSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCD 469

Query: 134 NGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
            G +   E V  +M + ++C P+I+T+N L+D   K    ++   + + +     + +  
Sbjct: 470 AGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSS 529

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N+++     A L G A  +  KM     +P  IT   II  Y       RA ++ D +
Sbjct: 530 TYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLV 589

Query: 253 SKLGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           S   +  +  V +   ++   C +    +  +L E   + G+ P  +T+ +L   +
Sbjct: 590 SCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIATWSVLINCF 645



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/340 (20%), Positives = 143/340 (42%), Gaps = 31/340 (9%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           ++  +I+V  + G    A+ +F  ++  GC P   +YN       H  D      +    
Sbjct: 113 LFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYN-------HVLDTLLGENRIQMI 165

Query: 73  FQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           +   + M+R   +PN+ TYN+LL+A  +   VD    L  E+      PD  +Y  V+ +
Sbjct: 166 YMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISS 225

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             + G++KE   +  R +     P +  +N LI+   K   +    ++ + ++     P 
Sbjct: 226 MCEVGLVKEGRELAERFE-----PVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPN 280

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAM--------KYTPSFITYECIITMYGYCDNV 242
           + +++++I     +   G+ E  F  +T M         YT S +   C +    +    
Sbjct: 281 VISYSTLINVLCNS---GQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTF---- 333

Query: 243 SRAREIFDELSK-LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
             A ++++++ +  G    V   N +++ +C +G   +A  +F +   +G +P+  TY  
Sbjct: 334 -DALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGS 392

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           L   + K    +    +  +M  +G  PN   +   +E  
Sbjct: 393 LINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEAL 432



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 108/239 (45%), Gaps = 7/239 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ ++  + +  + + A  L   M    C P    +NA I         A  L  A   
Sbjct: 424 VYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLC----DAGRLDWAEKV 479

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F++M+   RC PNIVTYN LL   A+A  +++   L +E+    +     TYN ++    
Sbjct: 480 FRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSC 539

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK--SLMHSKEKPT 190
             G+      ++ +M  +   PD IT N++I +Y K+   ++  Q+    S    K +P 
Sbjct: 540 NAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPD 599

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           + ++ ++I    ++  +     + ++M +    PS  T+  +I  +   D++ RA + F
Sbjct: 600 VISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIATWSVLINCF-ILDDIVRAHDQF 657



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/343 (19%), Positives = 149/343 (43%), Gaps = 17/343 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA-KALGY 72
           +  +I  +   GQ     +L  +M+  G      ++ ++I+ +     +   LA +A+  
Sbjct: 79  FEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVY-----RQVGLAERAVEM 133

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F ++K    C P++  YN +L        +  +  +++++      P+++TYN ++ A  
Sbjct: 134 FYRIKEFG-CDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALC 192

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           KN  +   + +L  M +  C PD +++  +I S  +     +  +     +  + +P + 
Sbjct: 193 KNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRE-----LAERFEPVVS 247

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            +N++I    K      A  + ++M     +P+ I+Y  +I +      +  A     ++
Sbjct: 248 VYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQM 307

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEA-DLLFENSHNMGVTPDSSTYKLLYKAY-TKAN 310
            K G    + TL+++++   + G   +A DL  +     G+ P+   Y  L + + +  N
Sbjct: 308 LKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGN 367

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSA 353
           + + V  +   ME+ G  PN R +   +  F+    GS  G+ 
Sbjct: 368 IVKAVS-VFSHMEEIGCSPNIRTYGSLINGFAKR--GSLDGAV 407



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 21/195 (10%)

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFN 195
           IKE++ V+ R++   C P  + F                   FKS+ +S   K T  TF 
Sbjct: 41  IKELD-VVKRLRQESCVPLALHF-------------------FKSIANSNLFKHTPLTFE 80

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
            MI            +Y+ Q+M    +  S   +  +I++Y       RA E+F  + + 
Sbjct: 81  VMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEF 140

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
           G D  V   N +L+            +++ +    G  P+  TY +L KA  K N  +  
Sbjct: 141 GCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGA 200

Query: 316 QKLLKRMEQNGIVPN 330
           +KLL  M   G  P+
Sbjct: 201 KKLLVEMSNKGCCPD 215


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 144/326 (44%), Gaps = 9/326 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG-CRPDPSVYNALITAHLHTRDKAKALAK 68
           D   Y+ LI  + K G+   A  LF +M  +G CRP+   YNAL+   L  +D+  A A+
Sbjct: 95  DVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDG-LCKQDRLDA-AR 152

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A+    + +      P++VTYN L+ A  Q   VD+  A F ++ E    P + ++N ++
Sbjct: 153 AVITEARKRDF---APDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAII 209

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
               +   + +   V + M      P+++T++++ID   K    D+ +Q+   ++    +
Sbjct: 210 TGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCR 269

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P L  +  +++ +  A     A  + ++M +    P  +TY  +I        V  A EI
Sbjct: 270 PDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEI 329

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F EL        V T +A++  YC      E   +      M   P+  TY  +    + 
Sbjct: 330 FRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVM---REMACRPNVVTYNTMIWGLSM 386

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
            +  E    + + M + G VP+ R +
Sbjct: 387 VDRNEEAYGMFREMSECGFVPDARTY 412



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 123/254 (48%), Gaps = 8/254 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R +  D   Y+ L+A + + G+   A+  F++M   G  P    +NA+IT       +
Sbjct: 159 RKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLC----R 214

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A+ LA AL  F +M   +   PN+VTY++++    ++  +D+   L   +      PD+ 
Sbjct: 215 ARRLADALEVFNEMIDRDF-HPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLV 273

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            Y  ++  +   G +     +L RM S  C PD++T+ ++ID   K    D   ++F+ L
Sbjct: 274 AYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFREL 333

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           + +K  P + T++++I  Y +A    +   V ++M      P+ +TY  +I      D  
Sbjct: 334 VANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMAC---RPNVVTYNTMIWGLSMVDRN 390

Query: 243 SRAREIFDELSKLG 256
             A  +F E+S+ G
Sbjct: 391 EEAYGMFREMSECG 404



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 132/313 (42%), Gaps = 10/313 (3%)

Query: 21  MGKKGQTRLAMWLFSEMRNSGCRPDPSV-YNALITAHLHTRDKAKALAKALGYFQKMKGM 79
           M + G    A+ LF E  N    P  SV YN LI    +  D    L  A    ++M  +
Sbjct: 1   MVRAGSHNQALQLFRE--NPCQLPASSVTYNVLIRGFCNASD----LDAAFSLLREMD-V 53

Query: 80  ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA-PDIYTYNGVMDAYGKNGMIK 138
           E  + N  T +I+L+   +   V Q    F    E   A PD+ +Y  +++   K G + 
Sbjct: 54  EGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVD 113

Query: 139 EMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 197
               +  +M  +  C+P+  T+N L+D   K+   D    V          P + T+N++
Sbjct: 114 AAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTL 173

Query: 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK 257
           +    +     +A   F +MT   Y P+ +++  IIT       ++ A E+F+E+     
Sbjct: 174 MAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDF 233

Query: 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
              + T + +++  C +    EA  L +   + G  PD   Y  L   ++ A   +    
Sbjct: 234 HPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALG 293

Query: 318 LLKRMEQNGIVPN 330
           LL+RM   G +P+
Sbjct: 294 LLRRMVSQGCIPD 306


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 147/338 (43%), Gaps = 14/338 (4%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M++Q        +Y+  +  + K G+   AM +   M++  C+PD   +N LI       
Sbjct: 44  MEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLC--- 100

Query: 61  DKAKALAKALGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
            KA  L +A    Q +  MER     N+VTYN L+   + A    +   + + +  +   
Sbjct: 101 -KAGRLDEAQ---QVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTT--- 153

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQ 177
           PD  TYN ++  + K+G I      L  MK    C PD  T+++LI+   K     K ++
Sbjct: 154 PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADE 213

Query: 178 VFKSLMHSKEK-PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           + + ++  K+   ++  FN+++  Y KA+   +A  +   M      P  +TY  II   
Sbjct: 214 LLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGL 273

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
             C +V +   + +++   G    V T   ++   C  G   EA  L +     G TP++
Sbjct: 274 CRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNA 333

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            TY L++    K +  ++   LL  +   G V +   F
Sbjct: 334 VTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAF 371



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 144/324 (44%), Gaps = 11/324 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEM-RNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           D   Y  L+      G+ + AM L  EM +  G  P PS+YN  +    H   K+  + +
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFV----HALCKSGKVPE 72

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A+   + MK    CKP++VT+N L+    +A  +D+   +  E+  S  A ++ TYN ++
Sbjct: 73  AMEVVKNMKD-GACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLI 131

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL-MHSKE 187
           +     G   E   V+  M +    PD  T+N +I  + K    D+     + +   +  
Sbjct: 132 NGLSSAGRSGEAVLVMQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGC 188

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSFITYECIITMYGYCDNVSRAR 246
            P   T++ +I    K+    KA+ + Q+M   K    S + +  ++  Y    ++ RAR
Sbjct: 189 SPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRAR 248

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+   + + G    V T + +++  C  G   +   L E   + G  PD  TY +L    
Sbjct: 249 ELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGL 308

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            KA       +L+KRM ++G  PN
Sbjct: 309 CKAGKMVEACRLVKRMLEDGCTPN 332



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 121/267 (45%), Gaps = 8/267 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++  + A+   Y+ LI  +   G++  A+ +   M  +   PD   YNA+I    H   K
Sbjct: 116 ERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTT---PDTQTYNAII----HGFCK 168

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE-LHESILAPDI 121
           +  + +A G+ ++MK    C P+  TY+IL+    ++ N+ + + L +E +        +
Sbjct: 169 SGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASV 228

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
             +N ++D Y K   +     +LS M  + C PD++T++ +ID   +    DK   + + 
Sbjct: 229 VAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEK 288

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++    KP + T+  ++    KA    +A  + ++M     TP+ +TY  +       D 
Sbjct: 289 MVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDK 348

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAML 268
           +  A ++   +   G+   V     +L
Sbjct: 349 LDMANDLLTSIRDKGRVTDVVAFETLL 375



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 102/239 (42%), Gaps = 35/239 (14%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRN-SGCRPDPSVYNALITAHLHTRDKAKA--- 65
           DT  Y+ +I    K G+   A     EM+  +GC PD   Y+ LI     + +  KA   
Sbjct: 155 DTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADEL 214

Query: 66  LAKALGY----------------FQKMKGMER------------CKPNIVTYNILLRACA 97
           L + +G                 + K + ++R            C P++VTY+ ++    
Sbjct: 215 LQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLC 274

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           +  +VD+  AL +++      PD+ TY  ++    K G + E   ++ RM  + C P+ +
Sbjct: 275 RCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAV 334

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           T++L+ D   K    D    +  S+        +  F +++++  K RL  +A   FQK
Sbjct: 335 TYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETLLLSV-KKRLLDRA--AFQK 390


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 148/322 (45%), Gaps = 22/322 (6%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G+TR A+ L   +      P+  +YN +I        K K +++A   F
Sbjct: 171 YGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLC----KRKLVSEACNLF 226

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  KG+     N+VTY+ ++        + +      E+    + PD+Y YN ++DA 
Sbjct: 227 SEMSVKGIS---ANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDAL 283

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G +KE ++VL+ +     KP++IT+N LID Y K         VF ++      P +
Sbjct: 284 HKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAK--------HVFNAVGLMGVTPDV 335

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIF 249
            ++N MI    K +   +A  ++++M      P+ +TY  +I   G C +  +S A ++ 
Sbjct: 336 WSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLID--GLCKSGRISYAWDLI 393

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK-LLYKAYTK 308
           DE+   G    V T N+++   C NG   +A  L     + G+ PD  T   LL+    K
Sbjct: 394 DEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTLNILLHGLLCK 453

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
               +  Q L + +   G  PN
Sbjct: 454 GKRLKNAQGLFQDLLDKGYHPN 475



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 140/322 (43%), Gaps = 53/322 (16%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  IY+ L+  + K+G+ + A  + + +  +  +P+   YN LI  +      AK +  A
Sbjct: 272 DVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGY------AKHVFNA 325

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +G    + G+    P++ +YNI++    + + V++   L+KE+H+  + P+  TYN ++D
Sbjct: 326 VG----LMGVT---PDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLID 378

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K+G I     ++  M       ++IT+N LI+   K    DK   +   +     +P
Sbjct: 379 GLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQP 438

Query: 190 TLPTFNSMIINYG---KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            + T N  I+ +G   K +    A+ +FQ +    Y P+  TY  II  YG+C       
Sbjct: 439 DMYTLN--ILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIII--YGHCK------ 488

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
                                       GL  EA  L     + G +P++ T+K++  A 
Sbjct: 489 ---------------------------EGLLDEAYALQSKMEDSGCSPNAITFKIIICAL 521

Query: 307 TKANMKELVQKLLKRMEQNGIV 328
            +    +  +KLL  M   G++
Sbjct: 522 LEKGETDKAEKLLCEMIARGLL 543



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 6/177 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           Q+  + +T  Y+ LI  + K G+   A  L  EM + G   +   YN+LI        K 
Sbjct: 363 QKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLC----KN 418

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRAC-AQARNVDQVNALFKELHESILAPDIY 122
             L KA+    KMK  +  +P++ T NILL     + + +     LF++L +    P++Y
Sbjct: 419 GQLDKAIALINKMKD-QGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVY 477

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           TYN ++  + K G++ E  ++ S+M+ + C P+ ITF ++I +  ++   DK E++ 
Sbjct: 478 TYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIIICALLEKGETDKAEKLL 534



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 127/289 (43%), Gaps = 6/289 (2%)

Query: 44  PDPSVYNALITAHLHTRDKA-KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
           P+PS+    + +H H+R  + + +  AL  F +M  M R  P I+ +N +L + A+ ++ 
Sbjct: 23  PNPSLPK--LHSHFHSRPPSFENVDDALFQFHRMLCM-RHTPPIIQFNKILDSFAKMKHY 79

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
             V +L + L    + PD +T N +++ +   G I    SVLS++     +PD +T   L
Sbjct: 80  PTVVSLSRRLELKAIQPDFFTLNILINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTL 139

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           I     +    K       L+    +    ++ ++I    K      A  + +++     
Sbjct: 140 IKGLCLKGQVKKALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRLT 199

Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
            P+ + Y  II        VS A  +F E+S  G    V T +A++  +C+ G  TEA L
Sbjct: 200 EPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEA-L 258

Query: 283 LFENSHNM-GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            F N   +  + PD   Y  L  A  K    +  + +L  + +  + PN
Sbjct: 259 GFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPN 307



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/277 (19%), Positives = 108/277 (38%), Gaps = 31/277 (11%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P+  T NIL+        ++   ++  ++ +    PD  T   ++      G +K+   
Sbjct: 95  QPDFFTLNILINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALH 154

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
              ++ +   + D +++  LI+   K        Q+ + +     +P +  +N++I    
Sbjct: 155 FHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLC 214

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC---------------------DN 241
           K +L  +A  +F +M+    + + +TY  II  +G+C                      +
Sbjct: 215 KRKLVSEACNLFSEMSVKGISANVVTYSAII--HGFCIVGKLTEALGFLNEMVLKAINPD 272

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG--------LPTEADLLFENSHNMGVT 293
           V     + D L K GK  +   + A++   C+          +   A  +F     MGVT
Sbjct: 273 VYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAKHVFNAVGLMGVT 332

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           PD  +Y ++     K    E    L K M Q  +VPN
Sbjct: 333 PDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPN 369


>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 642

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 152/357 (42%), Gaps = 41/357 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  YS LI+  GK G    A+ LF EM+ +G  P   +Y  L+  +     K   + KA
Sbjct: 233 DTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYF----KLDKVEKA 288

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L   ++MK  + C   + TY   ++   +A  VD    +F ++ +    PD+   N +++
Sbjct: 289 LDVIKEMKD-KGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLIN 347

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFN----------------------------- 160
             GK G ++    +  +M+S QCKP+++T+N                             
Sbjct: 348 ILGKVGRLEVTLKLFRKMESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKMKGCGIA 407

Query: 161 -------LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
                  +LID + K    +K   + + +      P    + S+I + GK +    A  +
Sbjct: 408 PSSFTYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANEL 467

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F ++       S   Y  +I  +G C  +S A ++F+E+ KLG    V   NA++     
Sbjct: 468 FLELKENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVR 527

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            G+  EA  L       G +PD +++ ++     +  + +   ++  +M+ + I P+
Sbjct: 528 AGMIDEAQSLLRTMDENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPD 584



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 150/327 (45%), Gaps = 6/327 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y++ I  +GK G+   A  +F +M   GC+PD  + N+LI    +   K   L   L  F
Sbjct: 307 YTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLI----NILGKVGRLEVTLKLF 362

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARN-VDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           +KM+  + CKPN+VTYN +++A  + +    +  + F+++    +AP  +TY+ ++D + 
Sbjct: 363 RKMESWQ-CKPNVVTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFC 421

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K   I++   +L  M      P    +  LI+S GK + ++   ++F  L  +    +  
Sbjct: 422 KTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELKENCGHSSAR 481

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            +  MI ++GK     +A  +F +M  +   P    Y  +++       +  A+ +   +
Sbjct: 482 VYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTM 541

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            + G    +++ N +L      G+P  A  +F    +  + PD+ +Y  +    + A + 
Sbjct: 542 DENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGLF 601

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALE 339
           E   KL++ M   G   N   +   LE
Sbjct: 602 EEAAKLMREMNLKGFEYNNITYTSILE 628



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 139/313 (44%), Gaps = 7/313 (2%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S+++ ++GK      A+ +F +++   C+P  + YN++I   L  + +   L K    + 
Sbjct: 167 SEIVKLLGKAKMVNKALSVFYQIKGRKCKPAATTYNSMI---LMLKQEGH-LEKVHEIYN 222

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +M     C P+ VTY+ L+ A  +  + D    LF E+ E+ L P    Y  ++  Y K 
Sbjct: 223 EMCNDGNCFPDTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKL 282

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
             +++   V+  MK   C   + T+   I   GK    D   +VF  ++    KP +   
Sbjct: 283 DKVEKALDVIKEMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLI 342

Query: 195 NSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN-VSRAREIFDEL 252
           NS+I   GK  RL+   + +F+KM + +  P+ +TY  +I     C    S A   F+++
Sbjct: 343 NSLINILGKVGRLEVTLK-LFRKMESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKM 401

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G      T + +++ +C      +A LL E     G  P  + Y  L  +  K    
Sbjct: 402 KGCGIAPSSFTYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRY 461

Query: 313 ELVQKLLKRMEQN 325
           E   +L   +++N
Sbjct: 462 EAANELFLELKEN 474



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 7/228 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI    K  +   A+ L  EM   G  P P+ Y +LI    ++  K K    A   F
Sbjct: 413 YSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLI----NSLGKVKRYEAANELF 468

Query: 74  QKMKGMERC-KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            ++K  E C   +   Y ++++   +   + +   LF E+ +    PD+Y YN +M    
Sbjct: 469 LELK--ENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMV 526

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + GMI E +S+L  M  N C PD+ + N++++   +    D+  ++F  +  S  KP   
Sbjct: 527 RAGMIDEAQSLLRTMDENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAV 586

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           ++N+++     A L  +A  + ++M    +  + ITY  I+   G  D
Sbjct: 587 SYNTVLGCLSHAGLFEEAAKLMREMNLKGFEYNNITYTSILEAVGKVD 634



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/296 (20%), Positives = 124/296 (41%), Gaps = 39/296 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  + + LI ++GK G+  + + LF +M +  C+P+   YN +I A    +  A   ++A
Sbjct: 338 DVVLINSLINILGKVGRLEVTLKLFRKMESWQCKPNVVTYNTVIKALFECKAPA---SEA 394

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQV------------------------ 105
             +F+KMKG     P+  TY+IL+    +   +++                         
Sbjct: 395 ASWFEKMKGC-GIAPSSFTYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLIN 453

Query: 106 -----------NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
                      N LF EL E+        Y  ++  +GK G + E   + + M+    KP
Sbjct: 454 SLGKVKRYEAANELFLELKENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKP 513

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           D+  +N L+    +    D+ + + +++  +   P L + N ++    +  +  +A  +F
Sbjct: 514 DVYAYNALMSGMVRAGMIDEAQSLLRTMDENGCSPDLNSHNIILNGLARTGVPDRAIEMF 573

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
            KM +    P  ++Y  ++    +      A ++  E++  G +    T  ++LEA
Sbjct: 574 AKMKSSIIKPDAVSYNTVLGCLSHAGLFEEAAKLMREMNLKGFEYNNITYTSILEA 629



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 131/322 (40%), Gaps = 41/322 (12%)

Query: 45  DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQ 104
           D S + ALI    H+ D+A    +     Q M     C  + V  + +++   +A+ V++
Sbjct: 126 DSSSFMALI----HSLDEAGFYGEMWKTIQDMVRSSTCVISSVYLSEIVKLLGKAKMVNK 181

Query: 105 VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLI 163
             ++F ++      P   TYN ++    + G ++++  + + M     C PD +T++ LI
Sbjct: 182 ALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSALI 241

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
            ++GK   +D   ++F  +  +   PT   + +++  Y K     KA  V ++M     T
Sbjct: 242 SAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCT 301

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML--------------- 268
            +  TY   I   G    V  A  +F ++ K G    V  +N+++               
Sbjct: 302 LTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKL 361

Query: 269 ----EAY-CMNGLPT----------------EADLLFENSHNMGVTPDSSTYKLLYKAYT 307
               E++ C   + T                EA   FE     G+ P S TY +L   + 
Sbjct: 362 FRKMESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFC 421

Query: 308 KANMKELVQKLLKRMEQNGIVP 329
           K N  E    LL+ M++ G  P
Sbjct: 422 KTNRIEKALLLLEEMDEKGFPP 443



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 1/205 (0%)

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++   GK  M+ +  SV  ++K  +CKP   T+N +I    +    +K+ +++  + +  
Sbjct: 169 IVKLLGKAKMVNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDG 228

Query: 187 EK-PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P   T++++I  +GK      A  +F +M      P+   Y  ++ +Y   D V +A
Sbjct: 229 NCFPDTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKA 288

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            ++  E+   G  + V T    ++     G   +A  +F +    G  PD      L   
Sbjct: 289 LDVIKEMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINI 348

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
             K    E+  KL ++ME     PN
Sbjct: 349 LGKVGRLEVTLKLFRKMESWQCKPN 373



 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 86/213 (40%), Gaps = 2/213 (0%)

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           D  ++  ++ +  + G   EM   +  M +S+ C    +  + ++   GK +  +K   V
Sbjct: 126 DSSSFMALIHSLDEAGFYGEMWKTIQDMVRSSTCVISSVYLSEIVKLLGKAKMVNKALSV 185

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM-TAMKYTPSFITYECIITMYG 237
           F  +   K KP   T+NSMI+   +     K   ++ +M       P  +TY  +I+ +G
Sbjct: 186 FYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSALISAFG 245

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
              +   A  +FDE+ + G          +L  Y       +A  + +   + G T    
Sbjct: 246 KLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCTLTVF 305

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           TY    K   KA   +   ++   M ++G  P+
Sbjct: 306 TYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPD 338



 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 73/188 (38%), Gaps = 35/188 (18%)

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY-GKARLQGKAEYV 213
           D  +F  LI S  +   + +M +  + ++ S        + S I+   GKA++  KA  V
Sbjct: 126 DSSSFMALIHSLDEAGFYGEMWKTIQDMVRSSTCVISSVYLSEIVKLLGKAKMVNKALSV 185

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F ++   K  P+  TY  +I M     ++ +  EI++E+                   C 
Sbjct: 186 FYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEM-------------------CN 226

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
           +G                  PD+ TY  L  A+ K    +   +L   M++NG+ P  + 
Sbjct: 227 DG---------------NCFPDTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKI 271

Query: 334 FLEALETF 341
           +   L  +
Sbjct: 272 YTTLLGIY 279


>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 530

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 154/321 (47%), Gaps = 14/321 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+++I + GK     LA  L   M++ G R   S ++ L+  ++    +A   A+A+  F
Sbjct: 146 YNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLVRRYV----RAGLAAEAVHAF 201

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+    CKP+ V+++I++ +  + R   +    F  L      PD+  Y  ++  + +
Sbjct: 202 NRMEDYG-CKPDKVSFSIVISSLCKKRRASEAELFFDSLKHK-FEPDVIVYTSLVHGWCR 259

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G I + E V S MK    KP++ T++++IDS  +     +   VF  ++ +   P   T
Sbjct: 260 AGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVT 319

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           FNS++  + KA    K   V+ +M  +      I+Y  +I  +   +N+  A ++ D + 
Sbjct: 320 FNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMV 379

Query: 254 KLGKDMKVSTLNAML----EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           K G     ST N++     E + +NG    A  ++     +   P++ TY +L + +  +
Sbjct: 380 KKGVAPNASTFNSIFGCIAELHDVNG----AHRMYAKMKELKCMPNTLTYNILMRMFADS 435

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              ++V KL K M+++ + PN
Sbjct: 436 KSIDMVLKLKKEMDESEVEPN 456



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 125/268 (46%), Gaps = 3/268 (1%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           ++L +F     +E    +   YN ++    + R+ D    L   +    +   + T++ +
Sbjct: 125 QSLAFFNWATTLEGFPSSPEPYNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVL 184

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  Y + G+  E     +RM+   CKPD ++F+++I S  K++   + E  F SL H K 
Sbjct: 185 VRRYVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLKH-KF 243

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P +  + S++  + +A    KAE VF  M      P+  TY  +I     C  ++RA +
Sbjct: 244 EPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHD 303

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F E+   G D    T N+++  +   G   +   ++     +G   D+ +Y  L +++ 
Sbjct: 304 VFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHC 363

Query: 308 K-ANMKELVQKLLKRMEQNGIVPNKRFF 334
           K  N+ E V K+L  M + G+ PN   F
Sbjct: 364 KDENLDEAV-KVLDTMVKKGVAPNASTF 390



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 158/356 (44%), Gaps = 36/356 (10%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI------- 53
           + K R        +S L+    + G    A+  F+ M + GC+PD   ++ +I       
Sbjct: 168 LMKSRGVRITVSTFSVLVRRYVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKR 227

Query: 54  -----------------------TAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90
                                  T+ +H   +A  +AKA   F  MK     KPN+ TY+
Sbjct: 228 RASEAELFFDSLKHKFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKE-AGVKPNVYTYS 286

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
           I++ +  +   + + + +F E+ ++   P+  T+N +M  + K G  +++  V ++MK  
Sbjct: 287 IVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRL 346

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
            C  D I++N LI+S+ K +  D+  +V  +++     P   TFNS+     +      A
Sbjct: 347 GCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGA 406

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
             ++ KM  +K  P+ +TY  ++ M+    ++    ++  E+ +   +  V+T   ++  
Sbjct: 407 HRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILILM 466

Query: 271 YCMNGLPTEA-DLLFENSHNMGVTPDSSTY----KLLYKAYTKANMKELVQKLLKR 321
           +C  G    A +L+ E      + P+ S Y    +LL  A      +ELV+K++ R
Sbjct: 467 FCEKGHWNNAYNLMKEMVEEKCLKPNLSIYETVLELLRNAGQLKKHEELVEKMVAR 522


>gi|242044666|ref|XP_002460204.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
 gi|241923581|gb|EER96725.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
          Length = 637

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 149/330 (45%), Gaps = 9/330 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++ W +      + ++  + K  ++R A  LF EM   G  P    YN LI A  +    
Sbjct: 135 RRLWTLPALPACNAVLDGLVKARRSRCAWELFDEMLRRGMVPSVVTYNTLINACRYQ--- 191

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
             A+AKA   + +M    +  PN++TY  ++    +   +     LF  + E+ + P+ Y
Sbjct: 192 -GAVAKAQEMWDQMVA-RQIDPNVITYTSMICVLCEEGCIGDAERLFDAMKEAGMRPNQY 249

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN +M  + +   +     +   + ++   P+ + F  LID + K + F + + +F+ +
Sbjct: 250 TYNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAKDMFRDM 309

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN- 241
                 PT+P +NS++    ++    +A  ++Q+MT +   P    + C I + G CD  
Sbjct: 310 PRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPD--EFTCSIVVRGLCDGG 367

Query: 242 -VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            +  A    + + + G ++  +  NA+++ YC NG   EA         +GV P+  +Y 
Sbjct: 368 QIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLEEALATCTRMTEVGVEPNVVSYS 427

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            L   ++K    ++   +   M   GI PN
Sbjct: 428 SLIDGHSKLGKMQIAMAIYTEMVAKGIEPN 457



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 133/316 (42%), Gaps = 11/316 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I V+ ++G    A  LF  M+ +G RP+   YN L++ H    D   A       +
Sbjct: 216 YTSMICVLCEEGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFV----LY 271

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           Q++   G+    PN V +  L+    +A+   +   +F+++    +AP +  YN +MD  
Sbjct: 272 QELLNSGL---IPNAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGA 328

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            ++G  +E  S+   M      PD  T ++++             +  + +         
Sbjct: 329 FRSGDAQEALSLYQEMTRLGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNA 388

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             +N++I  Y +     +A     +MT +   P+ ++Y  +I  +     +  A  I+ E
Sbjct: 389 AAYNALIDEYCRNGNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTE 448

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G +  V T  A++  +  NG    A    +     G++P++ T  +L     + N 
Sbjct: 449 MVAKGIEPNVVTYTALIHGHAKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCRENR 508

Query: 312 KELVQKLLKRMEQNGI 327
            +   + +  ME +GI
Sbjct: 509 VQDAVRFV--MEHSGI 522



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 90/201 (44%), Gaps = 3/201 (1%)

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
             +L+ +  +    D+   VF+ L      P LP  N+++    KAR    A  +F +M 
Sbjct: 114 LGVLVIALSQMGLLDEALYVFRRLW---TLPALPACNAVLDGLVKARRSRCAWELFDEML 170

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
                PS +TY  +I    Y   V++A+E++D++     D  V T  +M+   C  G   
Sbjct: 171 RRGMVPSVVTYNTLINACRYQGAVAKAQEMWDQMVARQIDPNVITYTSMICVLCEEGCIG 230

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           +A+ LF+     G+ P+  TY +L   + + +       L + +  +G++PN   F   +
Sbjct: 231 DAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVVFTTLI 290

Query: 339 ETFSSSLAGSQSGSAKTDLTR 359
           + F  +   S++     D+ R
Sbjct: 291 DGFCKAKRFSEAKDMFRDMPR 311



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 104/244 (42%), Gaps = 7/244 (2%)

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
            +L+ A +Q   +D+   +F+ L      P +   N V+D   K    +    +   M  
Sbjct: 115 GVLVIALSQMGLLDEALYVFRRLWT---LPALPACNAVLDGLVKARRSRCAWELFDEMLR 171

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
               P ++T+N LI++   + A  K ++++  ++  +  P + T+ SMI    +    G 
Sbjct: 172 RGMVPSVVTYNTLINACRYQGAVAKAQEMWDQMVARQIDPNVITYTSMICVLCEEGCIGD 231

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAM 267
           AE +F  M      P+  TY   + M G+C  D+V+ A  ++ EL   G          +
Sbjct: 232 AERLFDAMKEAGMRPNQYTYN--VLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVVFTTL 289

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           ++ +C     +EA  +F +    GV P    Y  L     ++   +    L + M + G+
Sbjct: 290 IDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGL 349

Query: 328 VPNK 331
            P++
Sbjct: 350 CPDE 353



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 104/233 (44%), Gaps = 17/233 (7%)

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A  + G++ E   V  R+ +    P +   N ++D   K +      ++F  ++     P
Sbjct: 120 ALSQMGLLDEALYVFRRLWT---LPALPACNAVLDGLVKARRSRCAWELFDEMLRRGMVP 176

Query: 190 TLPTFNSMIINYGKARLQG---KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
           ++ T+N++I      R QG   KA+ ++ +M A +  P+ ITY  +I +      +  A 
Sbjct: 177 SVVTYNTLI---NACRYQGAVAKAQEMWDQMVARQIDPNVITYTSMICVLCEEGCIGDAE 233

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +FD + + G      T N ++  +C       A +L++   N G+ P++  +  L   +
Sbjct: 234 RLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVVFTTLIDGF 293

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS-QSGSAKTDLT 358
            KA      + + + M + G+ P        +  ++S + G+ +SG A+  L+
Sbjct: 294 CKAKRFSEAKDMFRDMPRFGVAPT-------VPVYNSLMDGAFRSGDAQEALS 339



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 140/342 (40%), Gaps = 63/342 (18%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I +  +++ LI    K  +   A  +F +M   G  P   VYN+L+     + D  +AL+
Sbjct: 280 IPNAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALS 339

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQ-------ARNVDQV------------NAL 108
                +Q+M  +  C P+  T +I++R           AR ++ V            NAL
Sbjct: 340 ----LYQEMTRLGLC-PDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNAL 394

Query: 109 FKE------LHESI----------LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
             E      L E++          + P++ +Y+ ++D + K G ++   ++ + M +   
Sbjct: 395 IDEYCRNGNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGI 454

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA-RLQGKAE 211
           +P+++T+  LI  + K    D   +  K ++ +   P   T + ++    +  R+Q    
Sbjct: 455 EPNVVTYTALIHGHAKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCRENRVQDAVR 514

Query: 212 YVFQKMTAMKYT-----------------PSFITYECIITMYG-YCDNVS-RAREIFDEL 252
           +V +  + +KY+                 P+   Y  +I  YG Y D     A ++F  +
Sbjct: 515 FVMEH-SGIKYSDIHSFFSNFTTEEEPLIPNSAIYMTLI--YGLYLDGQHYEAGKLFSYM 571

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
            K G      T   ++   CM G    A +L+ +   +GV P
Sbjct: 572 RKSGMISDSFTYTLLIRGQCMLGYVLNAMMLYADMMKIGVKP 613


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 151/318 (47%), Gaps = 7/318 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L+   GK+      +WL  EM   G +P+  VY+  I   +    +AK   +A    
Sbjct: 323 YSVLMVAFGKRRDVETVLWLLREMEAHGVKPN--VYSYTIC--IRVLGQAKRFDEAYRIL 378

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM+  E CKP+++T+ +L++    A  +     +F ++ +S   PD  TY  ++D +G 
Sbjct: 379 AKMEN-EGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGD 437

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-RQAFDKMEQVFKSLMHSKEKPTLP 192
           NG  + +  + + MK++    +++ +  +ID+  +  + F+ +E +F  +      P   
Sbjct: 438 NGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALE-MFDEMKQKGIVPEQY 496

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           ++NS+I  + KA   G A  +F+ M      P+  T+   I  YG      +A + ++ +
Sbjct: 497 SYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELM 556

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G    V   NA+L     +G    A  +F     MGV+PD+ TY ++ K  +KA+  
Sbjct: 557 KSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKF 616

Query: 313 ELVQKLLKRMEQNGIVPN 330
           +   K+   M +N  VP+
Sbjct: 617 DEAVKIFYDMIENNCVPD 634



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 145/322 (45%), Gaps = 9/322 (2%)

Query: 11   TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
            TG+Y+ LI  +  +    +A  LF+EM+  GC PD   YN L+ A      K+  + + L
Sbjct: 880  TGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAM----GKSMRIEEML 935

Query: 71   GYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
               ++M  KG E      VTYN ++    ++R ++Q   L+  L     +P   TY  ++
Sbjct: 936  KVQEEMHRKGYES---TYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLL 992

Query: 129  DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            D   K G I++ E++ + M    CK +   +N+L++ +      +K+  +F+ ++     
Sbjct: 993  DGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGIN 1052

Query: 189  PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
            P + ++  +I    KA         F+++  M   P  ITY  +I   G    +  A  +
Sbjct: 1053 PDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSL 1112

Query: 249  FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            F+E+ K G    + T N+++      G   EA  ++E     G  P+  TY  L + Y+ 
Sbjct: 1113 FNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSV 1172

Query: 309  ANMKELVQKLLKRMEQNGIVPN 330
            +   +       RM   G +PN
Sbjct: 1173 SGSTDSAYAAYGRMIVGGCLPN 1194



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 11/325 (3%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           A+ G ++ +   +G +G  R A      M+ +G   +   YN L+   +    K+    +
Sbjct: 248 ANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLV----KSGFDRE 303

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL  ++ M  ++   P++ TY++L+ A  + R+V+ V  L +E+    + P++Y+Y   +
Sbjct: 304 ALEVYRVMM-VDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICI 362

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
              G+     E   +L++M++  CKPD+IT  +LI            + VF  +  S +K
Sbjct: 363 RVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQK 422

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVSRA 245
           P   T+ +++  +G     G ++ V +   AMK   Y  + + Y  +I        V  A
Sbjct: 423 PDRVTYITLLDKFGD---NGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEA 479

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            E+FDE+ + G   +  + N+++  +       +A  LF++    G  P+  T+ L    
Sbjct: 480 LEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINY 539

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
           Y K+       +  + M+  GIVP+
Sbjct: 540 YGKSGESIKAIQRYELMKSKGIVPD 564



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 129/287 (44%), Gaps = 7/287 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + + G+   A+ +F EM+  G  P+   YN+LI+  L    KA     AL  F
Sbjct: 463 YTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFL----KADRFGDALELF 518

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M  +   KPN  T+ + +    ++    +    ++ +    + PD+   N V+    K
Sbjct: 519 KHMD-IHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAK 577

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G +   + V   +K+    PD IT+ ++I    K   FD+  ++F  ++ +   P +  
Sbjct: 578 SGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLA 637

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            NS+I    KA    +A  +F ++  M   P+  TY  ++   G    V     + +E+ 
Sbjct: 638 VNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMY 697

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEA-DLLFENSHNMGVTPDSSTY 299
                  + T N +L+  C NG   +A D+L+  +   G  PD S+Y
Sbjct: 698 HSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMT-TKGCIPDLSSY 743



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 114/259 (44%), Gaps = 34/259 (13%)

Query: 10   DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD-------- 61
            D   Y+ L+  MGK  +    + +  EM   G       YN +I+  + +R         
Sbjct: 914  DEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLY 973

Query: 62   -----------------------KAKALAKALGYFQKMKGME-RCKPNIVTYNILLRACA 97
                                   KA  +  A   F +M  +E  CK N   YNILL    
Sbjct: 974  YNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEM--LEYGCKANCTIYNILLNGHR 1031

Query: 98   QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
             A N ++V  LF+++ +  + PDI +Y  ++D   K G + +  +   ++     +PD+I
Sbjct: 1032 IAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLI 1091

Query: 158  TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
            T+NLLID  GK +  ++   +F  +      P L T+NS+I++ GKA    +A  +++++
Sbjct: 1092 TYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEEL 1151

Query: 218  TAMKYTPSFITYECIITMY 236
                + P+  TY  +I  Y
Sbjct: 1152 LTKGWKPNVFTYNALIRGY 1170



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 138/334 (41%), Gaps = 31/334 (9%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA-- 67
           D   ++ LI V+   G+   A  +F +M+ S  +PD   Y  L+       D    +   
Sbjct: 389 DVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIW 448

Query: 68  ---KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
              KA GY            N+V Y  ++ A  Q   V +   +F E+ +  + P+ Y+Y
Sbjct: 449 NAMKADGY----------NDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSY 498

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++  + K     +   +   M  +  KP+  T  L I+ YGK     K  Q ++ LM 
Sbjct: 499 NSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYE-LMK 557

Query: 185 SKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
           SK   P +   N+++    K+   G A+ VF ++ AM  +P  ITY  +I     C   S
Sbjct: 558 SKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKC---CSKAS 614

Query: 244 RAREIFDELSKLGKDM-------KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
           +    FDE  K+  DM        V  +N++++     G   EA  +F     M + P  
Sbjct: 615 K----FDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTD 670

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            TY  L     +    + V  LL+ M  +   PN
Sbjct: 671 GTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPN 704



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 116/261 (44%), Gaps = 10/261 (3%)

Query: 22  GKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER 81
           GK G++  A+  +  M++ G  PD    NA+    L    K+  L  A   F ++K M  
Sbjct: 541 GKSGESIKAIQRYELMKSKGIVPDVVAGNAV----LFGLAKSGRLGMAKRVFHELKAMG- 595

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
             P+ +TY ++++ C++A   D+   +F ++ E+   PD+   N ++D   K G   E  
Sbjct: 596 VSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAW 655

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
            +  ++K    +P   T+N L+   G+     ++  + + + HS   P L T+N+++   
Sbjct: 656 RIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCL 715

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM-- 259
            K      A  +   MT     P   +Y  +I  YG      R  E F    ++ K +  
Sbjct: 716 CKNGAVNDALDMLYSMTTKGCIPDLSSYNTVI--YGLVKE-ERYNEAFSIFCQMKKVLIP 772

Query: 260 KVSTLNAMLEAYCMNGLPTEA 280
             +TL  +L ++   GL  EA
Sbjct: 773 DYATLCTILPSFVKIGLMKEA 793



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 81/158 (51%), Gaps = 5/158 (3%)

Query: 9    ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            A+  IY+ L+      G T     LF +M + G  PD   Y  +I     T  KA  L  
Sbjct: 1018 ANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIII----DTLCKAGQLND 1073

Query: 69   ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
             L YF+++  M   +P+++TYN+L+    +++ +++  +LF E+ +  + P++YTYN ++
Sbjct: 1074 GLTYFRQLLEMG-LEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLI 1132

Query: 129  DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
               GK G   E   +   + +   KP++ T+N LI  Y
Sbjct: 1133 LHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGY 1170



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/380 (20%), Positives = 149/380 (39%), Gaps = 40/380 (10%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           + K +  + D    + ++  + K G+  +A  +F E++  G  PD   Y  +I       
Sbjct: 555 LMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCC---- 610

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            KA    +A+  F  M     C P+++  N L+    +A   D+   +F +L E  L P 
Sbjct: 611 SKASKFDEAVKIFYDMI-ENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPT 669

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TYN ++   G+ G +KE+  +L  M  +   P++IT+N ++D   K  A +    +  
Sbjct: 670 DGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLY 729

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM---------TAMKYTPSFITY-- 229
           S+      P L ++N++I    K     +A  +F +M         T     PSF+    
Sbjct: 730 SMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGL 789

Query: 230 ----------------------ECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLN 265
                                  C   M G      + ++ E  + ++  G  +    L 
Sbjct: 790 MKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLC 849

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            +++  C      EA  L +   + GV+  +  Y  L       N+ ++ + L   M++ 
Sbjct: 850 PLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKEL 909

Query: 326 GIVPNKRFFLEALETFSSSL 345
           G  P++  +   L+    S+
Sbjct: 910 GCGPDEFTYNLLLDAMGKSM 929



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 9/148 (6%)

Query: 10   DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
            D   Y+ +I  + K GQ    +  F ++   G  PD   YN LI        K+K L +A
Sbjct: 1054 DIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDG----LGKSKRLEEA 1109

Query: 70   LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            +  F +M  KG+    PN+ TYN L+    +A    +   +++EL      P+++TYN +
Sbjct: 1110 VSLFNEMQKKGI---VPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNAL 1166

Query: 128  MDAYGKNGMIKEMESVLSRMKSNQCKPD 155
            +  Y  +G      +   RM    C P+
Sbjct: 1167 IRGYSVSGSTDSAYAAYGRMIVGGCLPN 1194



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 1/129 (0%)

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
           G  R+   AE VF  M       +  T+  I    G    +  A      + + G  +  
Sbjct: 227 GHGRVGDMAE-VFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNA 285

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T N ++     +G   EA  ++      GV P   TY +L  A+ K    E V  LL+ 
Sbjct: 286 YTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLRE 345

Query: 322 MEQNGIVPN 330
           ME +G+ PN
Sbjct: 346 MEAHGVKPN 354


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 147/320 (45%), Gaps = 8/320 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+    +  +  LA+  F ++  +G R D  + N L+      +   +AL   L   
Sbjct: 118 YAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRT 177

Query: 74  QKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHE--SILAPDIYTYNGVMDA 130
            ++     C P++ +Y+ILL++ C Q ++  Q + L + + E  ++ +PD+  Y  V+D 
Sbjct: 178 PELG----CVPDVFSYSILLKSLCDQGKS-GQADDLLRMMAEGGAVCSPDVVAYTTVIDC 232

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K G + +   +   M      PD++T++ ++ +  K +A  K E   + +++    P 
Sbjct: 233 FFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPD 292

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             T+N++I  Y       +A  VF++M      P  +T   ++        +  AR++FD
Sbjct: 293 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFD 352

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            ++  G++  V +   ML  Y   G   +   LF+     G+ PD  T+ +L KAY    
Sbjct: 353 TMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCG 412

Query: 311 MKELVQKLLKRMEQNGIVPN 330
           M +    +   M  +G+ P+
Sbjct: 413 MLDKAMIIFNEMRDHGVKPD 432



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 149/358 (41%), Gaps = 44/358 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I    K+G    A  LF EM   G  PD   Y++++    H   KA+A+ KA
Sbjct: 222 DVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVV----HALCKARAMGKA 277

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
             + ++M  KG+    P+  TYN L+   +      +   +FKE+    + PD+ T N +
Sbjct: 278 EAFLRQMVNKGV---LPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNML 334

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           M +  K G IKE   V   M      PD+ ++ ++++ Y  +     M  +F  ++    
Sbjct: 335 MGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGI 394

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT------------- 234
            P + TF+ +I  Y    +  KA  +F +M      P  +TY  +I              
Sbjct: 395 APDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAME 454

Query: 235 --------------------MYGYCDNVS--RAREIFDELSKLGKDMKVSTLNAMLEAYC 272
                               + G+C + S  +A+E+  E+   G  + +   ++++   C
Sbjct: 455 KFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLC 514

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             G   +A  +F+ + N+G  PD+  Y +L   Y      E   ++   M   GI PN
Sbjct: 515 KLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 572



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 140/307 (45%), Gaps = 11/307 (3%)

Query: 41  GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM-KGMERCKPNIVTYNILLRACAQA 99
           GC PD   Y+ L+ +     D+ K+  +A    + M +G   C P++V Y  ++    + 
Sbjct: 181 GCVPDVFSYSILLKSLC---DQGKS-GQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKE 236

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
            +V++   LFKE+ +  + PD+ TY+ V+ A  K   + + E+ L +M +    PD  T+
Sbjct: 237 GDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTY 296

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM---IINYGKARLQGKAEYVFQK 216
           N LI  Y     + +  +VFK +      P + T N +   +  YGK +   +A  VF  
Sbjct: 297 NNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIK---EARDVFDT 353

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M      P   +Y+ ++  Y     +    ++FD +   G    + T + +++AY   G+
Sbjct: 354 MAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGM 413

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
             +A ++F    + GV PD  TY  +  A  +    +   +   +M   G+ P+K  +  
Sbjct: 414 LDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC 473

Query: 337 ALETFSS 343
            ++ F +
Sbjct: 474 LIQGFCT 480



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 135/310 (43%), Gaps = 13/310 (4%)

Query: 29  LAMWLFSEMRNSGCRP---DPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERCK 83
           LA+ LF+   +    P    P+ +   I     TR     LA  L +F ++   G+   +
Sbjct: 93  LAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELA--LAFFGQLLRTGL---R 147

Query: 84  PNIVTYNILLRACAQARNVDQ-VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
            +I+  N LL+   +A+  D+ ++ L     E    PD+++Y+ ++ +    G   + + 
Sbjct: 148 VDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADD 207

Query: 143 VLSRMKSNQ--CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
           +L  M      C PD++ +  +ID + K    +K   +FK ++     P L T++S++  
Sbjct: 208 LLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHA 267

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
             KAR  GKAE   ++M      P   TY  +I  Y        A  +F E+ +      
Sbjct: 268 LCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPD 327

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           V TLN ++ + C  G   EA  +F+     G  PD  +YK++   Y        +  L  
Sbjct: 328 VVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFD 387

Query: 321 RMEQNGIVPN 330
            M  +GI P+
Sbjct: 388 LMLGDGIAPD 397



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/329 (20%), Positives = 134/329 (40%), Gaps = 5/329 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++   + D    + L+  + K G+ + A  +F  M   G  PD   Y  ++  +      
Sbjct: 320 RRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYA----T 375

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L      F  M G +   P+I T+++L++A A    +D+   +F E+ +  + PD+ 
Sbjct: 376 KGCLVDMTDLFDLMLG-DGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVV 434

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  V+ A  + G + +     ++M      PD   ++ LI  +    +  K +++   +
Sbjct: 435 TYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEI 494

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           M++  +  +  F+S+I N  K      A+ +F     +   P  + Y  ++  Y     +
Sbjct: 495 MNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKM 554

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +FD +   G +  V     ++  YC  G   E   LF      G+ P +  Y ++
Sbjct: 555 EKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNII 614

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNK 331
                 A      +     M ++GI  NK
Sbjct: 615 IDGLFVAGRTVPAKVKFHEMTESGIAINK 643



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 138/332 (41%), Gaps = 40/332 (12%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF  M   G  PD   ++ LI A+ +       L KA+  F +M+     KP++VTY  +
Sbjct: 385 LFDLMLGDGIAPDIYTFSVLIKAYAN----CGMLDKAMIIFNEMRD-HGVKPDVVTYTTV 439

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG-MIKEMESVL------- 144
           + A  +   +D     F ++ +  +APD Y Y+ ++  +  +G ++K  E +L       
Sbjct: 440 IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGM 499

Query: 145 -------SRMKSNQCK--------------------PDIITFNLLIDSYGKRQAFDKMEQ 177
                  S + +N CK                    PD + +++L+D Y      +K  +
Sbjct: 500 RLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALR 559

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           VF +++ +  +P +  + +++  Y K     +   +F++M      PS I Y  II    
Sbjct: 560 VFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLF 619

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
                  A+  F E+++ G  +   T N +L  +  N    EA  LF+    M V  D  
Sbjct: 620 VAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDII 679

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           T   +     +    E  + L   + ++G+VP
Sbjct: 680 TLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 711



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 19/226 (8%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   +S +I  + K G+   A  +F    N G  PD  VY+ L+  +         + KA
Sbjct: 502 DIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLV----GKMEKA 557

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           L  F  M   G+E   PN+V Y  L+    +   +D+  +LF+E+ +  + P    YN +
Sbjct: 558 LRVFDAMVSAGIE---PNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNII 614

Query: 128 MDAYGKNGM-----IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +D     G      +K  E   S +  N+C     T+N+++  + K + FD+   +FK L
Sbjct: 615 IDGLFVAGRTVPAKVKFHEMTESGIAINKC-----TYNIVLRGFFKNRCFDEAIFLFKEL 669

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
                K  + T N+MI    + R   +A+ +F  ++     P  +T
Sbjct: 670 RAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVT 715


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 134/317 (42%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI    K+G    A+ +   M +    P+   YN LI        + K++ +A+   
Sbjct: 363 FNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFC----RGKSMDRAMALL 418

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM    +  P++VTYN L+    +   VD  + LF+ +     +PD +T+N  M    +
Sbjct: 419 NKMVE-SKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCR 477

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + E   +L  +K    K +   +  LID Y K    +    +FK ++  +  P   T
Sbjct: 478 MGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSIT 537

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           FN MI    K      A  + + M      P+  TY  ++       +  RA EI + L 
Sbjct: 538 FNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLI 597

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V T  A ++AYC  G   EA+ +     N GV  DS  Y LL  AY    + +
Sbjct: 598 SSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLD 657

Query: 314 LVQKLLKRMEQNGIVPN 330
               +L+RM   G  P+
Sbjct: 658 SAFGVLRRMFGTGCEPS 674



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 128/284 (45%), Gaps = 7/284 (2%)

Query: 54  TAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKEL 112
           T  +H   +A  L +AL ++ +M+  + C P + TY +L+ A C   R ++ + +LF E+
Sbjct: 259 TNLIHGLCEAGKLHEALEFWARMRE-DGCFPTVRTYTVLVCALCESGRELEAL-SLFGEM 316

Query: 113 HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 172
            E    P++YTY  ++D   K G + E   +L+ M      P ++ FN LI SY KR   
Sbjct: 317 RERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMM 376

Query: 173 DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 232
           +    V   +   K  P + T+N +I  + + +   +A  +  KM   K +P  +TY  +
Sbjct: 377 EDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTL 436

Query: 233 ITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
           I  +G C+   V  A  +F  + + G      T NA +   C  G   EA  + E+    
Sbjct: 437 I--HGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEK 494

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            V  +   Y  L   Y KA   E    L KRM     +PN   F
Sbjct: 495 HVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITF 538



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 147/317 (46%), Gaps = 7/317 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  + + G+   A+  ++ MR  GC P    Y  L+ A   +  + +AL+     F
Sbjct: 258 YTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALS----LF 313

Query: 74  QKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            +M+  ER C+PN+ TY +L+    +   +D+   +  E+ E  +AP +  +N ++ +Y 
Sbjct: 314 GEMR--ERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYC 371

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K GM+++   VL  M+S +  P++ T+N LI  + + ++ D+   +   ++ SK  P + 
Sbjct: 372 KRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVV 431

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N++I    +  +   A  +F+ M    ++P   T+   +        V  A +I + L
Sbjct: 432 TYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESL 491

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            +           A+++ YC  G    A  LF+        P+S T+ ++     K    
Sbjct: 492 KEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKV 551

Query: 313 ELVQKLLKRMEQNGIVP 329
           +    L++ M +  + P
Sbjct: 552 QDAMLLVEDMAKFDVKP 568



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 147/388 (37%), Gaps = 69/388 (17%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K++   A+   Y+ LI    K G+   A  LF  M    C P+   +N +I      R +
Sbjct: 492 KEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDG---LRKE 548

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K +  A+   + M   +  KP + TYNIL+    +  + D+ N +   L  S   P++ 
Sbjct: 549 GK-VQDAMLLVEDMAKFD-VKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVV 606

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY   + AY   G ++E E ++ ++K+     D   +NLLI++YG     D    V + +
Sbjct: 607 TYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRM 666

Query: 183 MHSKEKPTLPTFNSMI------------------------INYGKARLQGKAEY-----V 213
             +  +P+  T++ ++                        I+     +  K ++     +
Sbjct: 667 FGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVL 726

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F+KM      P+  TY  +I        ++ A  ++  + + G        N++L + C 
Sbjct: 727 FEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCK 786

Query: 274 NGLPTEA----DLLFENSH-------------------------------NMGVTPDSST 298
            G+  EA    D + E SH                                 G   D   
Sbjct: 787 LGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVA 846

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNG 326
           +K+L     K    +   +LL  ME+NG
Sbjct: 847 WKVLIDGLAKTGYVDQCSELLNLMEKNG 874



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/352 (21%), Positives = 133/352 (37%), Gaps = 36/352 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI  + + G    A  LF  M   G  PD   +NA +        +   + +A
Sbjct: 429 DVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLC----RMGRVGEA 484

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               + +K  +  K N   Y  L+    +A  ++   +LFK +      P+  T+N ++D
Sbjct: 485 HQILESLKE-KHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMID 543

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K G +++   ++  M     KP + T+N+L++   K   FD+  ++   L+ S  +P
Sbjct: 544 GLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQP 603

Query: 190 TLPTFNSMIINY-GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
            + T+ + I  Y  + RL+   E V +         SFI Y  +I  YG    +  A  +
Sbjct: 604 NVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFI-YNLLINAYGCMGLLDSAFGV 662

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD--------------------------- 281
              +   G +    T + +++   +     E                             
Sbjct: 663 LRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGI 722

Query: 282 --LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             +LFE     G  P+ +TY  L     K     +   L   M + GI P++
Sbjct: 723 TTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSE 774



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/292 (20%), Positives = 115/292 (39%), Gaps = 34/292 (11%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  +   Y+  I     +G+   A  +  +++N G   D  +YN LI A+         L
Sbjct: 601 YQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAY----GCMGLL 656

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARN------------------VDQVN-- 106
             A G  ++M G   C+P+ +TY+IL++     ++                  VD  +  
Sbjct: 657 DSAFGVLRRMFG-TGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIW 715

Query: 107 ---------ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
                     LF+++ E    P++ TY+ +++   K G +    S+   M+     P  I
Sbjct: 716 SKIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEI 775

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
             N L+ S  K   F +   +  S+M       L ++  +I    +   + KAE VF  +
Sbjct: 776 IHNSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSL 835

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
               Y    + ++ +I        V +  E+ + + K G  +   T + +++
Sbjct: 836 LRCGYNYDEVAWKVLIDGLAKTGYVDQCSELLNLMEKNGCRLHPETYSMLMQ 887



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 82/214 (38%), Gaps = 38/214 (17%)

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK---PTLPTFNSMIINYGKARLQGK 209
           K  + ++N L+    +    D+M  ++K ++        P L T N+M+ +Y K      
Sbjct: 148 KLSLTSYNRLLMCLSRFSMVDEMISLYKEMLTDNGNSVFPNLITLNTMLNSYCKLGNMAV 207

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIF------------------ 249
           A   F ++   +  P   TY  ++   GYC  D+V RA  +F                  
Sbjct: 208 ARLFFVRILRCEPGPDLFTYTSLV--LGYCRNDDVERACGVFCVMPRRNAVSYTNLIHGL 265

Query: 250 DELSKLGKDMK-------------VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
            E  KL + ++             V T   ++ A C +G   EA  LF      G  P+ 
Sbjct: 266 CEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNV 325

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            TY +L     K    +   K+L  M + G+ P+
Sbjct: 326 YTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPS 359



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 73/167 (43%), Gaps = 17/167 (10%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + +   YSKLI  + K G+  +A  L+  MR  G  P   ++N+L+++            
Sbjct: 736 VPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSS-----------C 784

Query: 68  KALGYFQK----MKGMERCK--PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             LG F +    +  M  C    ++ +Y +L+    +  N ++  A+F  L       D 
Sbjct: 785 CKLGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDE 844

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
             +  ++D   K G + +   +L+ M+ N C+    T+++L+    +
Sbjct: 845 VAWKVLIDGLAKTGYVDQCSELLNLMEKNGCRLHPETYSMLMQELNR 891


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 158/347 (45%), Gaps = 18/347 (5%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI-TAHLHTRDK 62
           QR    ++  Y  LI  +GKKG    A  LF  M ++G   +P VY +LI    +H R  
Sbjct: 454 QRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGR-- 511

Query: 63  AKALAKALGYFQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
                K  G+ +  K M R  C+P++   N  +    +A +V++  A+F+++      PD
Sbjct: 512 -----KEDGH-KIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPD 565

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + +Y+ ++    K G  +E  S+   MK      D   +N ++D + K    DK  +V +
Sbjct: 566 VRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLE 625

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +   +  PT+ T+ S+I    K     +A  +F++  +     + I Y  +I  +G   
Sbjct: 626 EMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVG 685

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            +  A  I +E+ K G    V T N++++A        EA + F++   M  +P++ TY 
Sbjct: 686 RIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYS 745

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
           +L     +           + M++ G+VPN       + T+++ +AG
Sbjct: 746 ILINGLCRVQKYNKAFVFWQEMQKQGLVPN-------VVTYTTMIAG 785



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 139/309 (44%), Gaps = 9/309 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           ++ D   YS LI  + K GQ R    +F  M+  G   D   YNA++        K+  L
Sbjct: 562 FLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFC----KSGKL 617

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            KA    ++MK ++R  P + TY  ++   A+   +D+   LF+E     +  ++  Y+ 
Sbjct: 618 DKAYEVLEEMK-VKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSS 676

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++D +GK G I E   +L  M      P++ T+N L+D+  K +  ++    F+S+   K
Sbjct: 677 LIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMK 736

Query: 187 EKPTLPTFNSMIINYGKARLQ--GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
             P   T+ S++IN G  R+Q   KA   +Q+M      P+ +TY  +I       N++ 
Sbjct: 737 CSPNTYTY-SILIN-GLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITD 794

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  +F+     G     ++ NA++E         EA  +FE +   G   +      L  
Sbjct: 795 ACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRLKGCRINVKACISLLD 854

Query: 305 AYTKANMKE 313
           A  KA   E
Sbjct: 855 ALNKAECLE 863



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 142/337 (42%), Gaps = 40/337 (11%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           A+  +Y+ LI      G+      +F EM   GC+PD ++ N     ++    KA  + K
Sbjct: 494 ANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNT----YMDCVFKAGDVEK 549

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
               F+ +KG     P++ +Y+IL+    +A    + +++F  + +   A D   YN V+
Sbjct: 550 GRAIFEDIKGYGFL-PDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVV 608

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKP---------------------------------- 154
           D + K+G + +   VL  MK  +  P                                  
Sbjct: 609 DGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIE 668

Query: 155 -DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
            ++I ++ LID +GK    D+   + + +M     P + T+NS++    KA    +A   
Sbjct: 669 LNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALIC 728

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           FQ M  MK +P+  TY  +I         ++A   + E+ K G    V T   M+     
Sbjct: 729 FQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAK 788

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            G  T+A  LFE     G TPD++++  L +  + AN
Sbjct: 789 VGNITDACSLFERFKANGGTPDAASFNALIEGMSHAN 825



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 143/332 (43%), Gaps = 8/332 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I V+ K G+   A  LF +M      P    YN +I  +      A     A    
Sbjct: 290 YTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGY----GSAGQFENAYKLL 345

Query: 74  QKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            ++K  ER C P++V++N +L    + R VD+   LF+ + +    P+  TYN ++D   
Sbjct: 346 DQLK--ERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDA-EPNSSTYNIIIDMLC 402

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
             G ++E   +   M+     P+++T N+++D   K + F+   ++F++       P   
Sbjct: 403 MAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSV 462

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+ S+I   GK      A  +F+ M    +  + + Y  +I  +          +IF E+
Sbjct: 463 TYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEM 522

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           ++ G    ++ LN  ++     G   +   +FE+    G  PD  +Y +L    TKA   
Sbjct: 523 NRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQA 582

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
                +   M+Q G   + R +   ++ F  S
Sbjct: 583 RETSSIFHAMKQQGFALDARAYNAVVDGFCKS 614



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 144/327 (44%), Gaps = 12/327 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y     +++ L+  + ++G+   A+ L  E++ S   PD  +YN  I        KA  +
Sbjct: 213 YEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCF----GKAGNV 268

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             A  +F ++K  +  KP+ V+Y  ++    +A  + +   LF ++      P  Y YN 
Sbjct: 269 DMAWKFFHELKS-QGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNT 327

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  YG  G  +    +L ++K   C P +++FN ++   GK++  D+   +F++ M   
Sbjct: 328 MIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEA-MKKD 386

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT---PSFITYECIITMYGYCDNVS 243
            +P   T+N +I     A   GK E  +     M++    P+ +T   ++          
Sbjct: 387 AEPNSSTYNIIIDMLCMA---GKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFE 443

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A E+F+  S+ G +    T  ++++     G   +A  LFEN  + G   +   Y  L 
Sbjct: 444 PAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLI 503

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
           + +     KE   K+ K M + G  P+
Sbjct: 504 RNFFMHGRKEDGHKIFKEMNRRGCQPD 530



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 132/289 (45%), Gaps = 11/289 (3%)

Query: 44  PDPSVYNALITAHLHTR--DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN 101
           P+P+  + L++A + TR  D A+ +  A+   +++K     +P    Y +L+ A A+AR 
Sbjct: 146 PNPACAD-LVSALVRTRRLDDAERVIAAM---RRLK----FRPAFSAYTVLIGAMAEARQ 197

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
            ++   L +++ E      +  +  ++ A  + G ++   +++  +K +  +PDI+ +N+
Sbjct: 198 PERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNV 257

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
            ID +GK    D   + F  L     KP   ++ SMI    KA    +AE +F +M   +
Sbjct: 258 CIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETER 317

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
             P    Y  +I  YG       A ++ D+L + G    V + N++L          EA 
Sbjct: 318 AVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEAL 377

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            LFE +      P+SSTY ++      A   E    +   ME  G+ PN
Sbjct: 378 TLFE-AMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPN 425



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 148/364 (40%), Gaps = 41/364 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I   G  GQ   A  L  +++  GC P    +N+++T       K + + +AL  F
Sbjct: 325 YNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTC----LGKKRKVDEALTLF 380

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + MK  +  +PN  TYNI++     A  V++   +  E+  + L P++ T N ++D   K
Sbjct: 381 EAMK--KDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCK 438

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
               +    +        C P+ +T+  LID  GK+   D   ++F++++ +        
Sbjct: 439 AKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVV 498

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI---TY-ECI---------------IT 234
           + S+I N+     +     +F++M      P      TY +C+               I 
Sbjct: 499 YTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIK 558

Query: 235 MYGYCDNV-------------SRARE---IFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
            YG+  +V              +ARE   IF  + + G  +     NA+++ +C +G   
Sbjct: 559 GYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLD 618

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           +A  + E      V P  +TY  +     K +  +    L +  +  GI  N   +   +
Sbjct: 619 KAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLI 678

Query: 339 ETFS 342
           + F 
Sbjct: 679 DGFG 682



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 79/200 (39%), Gaps = 38/200 (19%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +YS LI   GK G+   A  +  EM   G  P+   +N+L+ A +    KA+ + +AL  
Sbjct: 673 VYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALV----KAEEINEALIC 728

Query: 73  FQKMKGME--------------RCK--------------------PNIVTYNILLRACAQ 98
           FQ MK M+               C+                    PN+VTY  ++   A+
Sbjct: 729 FQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAK 788

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
             N+    +LF+    +   PD  ++N +++         E   V    +   C+ ++  
Sbjct: 789 VGNITDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRLKGCRINVKA 848

Query: 159 FNLLIDSYGKRQAFDKMEQV 178
              L+D+  K +  ++   V
Sbjct: 849 CISLLDALNKAECLEQAAVV 868


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 147/331 (44%), Gaps = 11/331 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K R ++ D   Y+ +I     +G+  LA+ +F E+    C P    Y  LI A +   D 
Sbjct: 165 KSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATI--LDG 222

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              +A  L      KG+E   P+ +TYN ++R   +   VD+   L + L      PDI 
Sbjct: 223 GIDVAMKLLDEMLSKGLE---PDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDII 279

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++      G   E E ++S M S  CKP+++T ++LI +  +    ++   + +S+
Sbjct: 280 TYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSM 339

Query: 183 MHSKEKPTLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC-- 239
                KP    ++ +I  + +  RL    E++ + M +    P  + Y  I  M G C  
Sbjct: 340 KEKGLKPDAYCYDPLIAGFCREGRLDLATEFL-EYMISDGCLPDIVNYNTI--MAGLCRT 396

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
               +A E+F++L ++G    VS+ N +  A   +G    A  +     N G+ PD  TY
Sbjct: 397 GKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITY 456

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             L     +  M +   +LL  M+     PN
Sbjct: 457 NSLISCLCRDGMVDEAIELLVDMQSGRYRPN 487



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 152/334 (45%), Gaps = 17/334 (5%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R+   D   Y+ LI+   K  Q   A  +   M++ G  PD   YN +I     +R K 
Sbjct: 131 ERYGKPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMI-GSFCSRGK- 188

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L  AL  F+++   + C+P ++TY IL+ A      +D    L  E+    L PD  T
Sbjct: 189 --LDLALEIFEELLK-DNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLT 245

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++    K  M+ +   +L  + S  CKPDIIT+N+L+ +   R  + + E++   ++
Sbjct: 246 YNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMI 305

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYC- 239
               KP + T + +I   G     GK E     + +MK     P    Y+ +I   G+C 
Sbjct: 306 SIGCKPNVVTHSILI---GTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIA--GFCR 360

Query: 240 -DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              +  A E  + +   G    +   N ++   C  G   +A  +FE    +G  P+ S+
Sbjct: 361 EGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSS 420

Query: 299 YKLLYKA-YTKANMKELVQKLLKRMEQNGIVPNK 331
           Y  L+ A ++  +    ++ +LK + Q GI P++
Sbjct: 421 YNTLFSALWSSGDRYRALEMILKLLNQ-GIDPDE 453



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 146/333 (43%), Gaps = 9/333 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALG 71
           Y+ LI      G   +AM L  EM + G  PD   YNA+I         DKA  L ++L 
Sbjct: 211 YTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLS 270

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
                +G   CKP+I+TYNILLR         +   L  E+      P++ T++ ++   
Sbjct: 271 S----RG---CKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTL 323

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            ++G ++E  ++L  MK    KPD   ++ LI  + +    D   +  + ++     P +
Sbjct: 324 CRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDI 383

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             +N+++    +     +A  VF+K+  +   P+  +Y  + +      +  RA E+  +
Sbjct: 384 VNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILK 443

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           L   G D    T N+++   C +G+  EA  L  +  +    P+  +Y ++     K N 
Sbjct: 444 LLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNR 503

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
                ++L  M + G  PN+  ++  +E    S
Sbjct: 504 ANDAIEVLAAMTEKGCQPNETTYILLIEGIGFS 536



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 127/296 (42%), Gaps = 5/296 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  Y+ +I  M K+     A  L   + + GC+PD   YN L+   L +R K     K 
Sbjct: 242 DTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLL-SRGKWSEGEKL 300

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +     +     CKPN+VT++IL+    +   V++   L + + E  L PD Y Y+ ++ 
Sbjct: 301 ISEMISIG----CKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIA 356

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            + + G +      L  M S+ C PDI+ +N ++    +    D+  +VF+ L      P
Sbjct: 357 GFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPP 416

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + ++N++      +  + +A  +  K+      P  ITY  +I+       V  A E+ 
Sbjct: 417 NVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELL 476

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            ++        V + N +L   C      +A  +       G  P+ +TY LL + 
Sbjct: 477 VDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEG 532



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 116/252 (46%), Gaps = 11/252 (4%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+++    L++    +RN+ +   +  E+ E    PD++ YN ++  + K   ++    V
Sbjct: 102 PDVILCTKLIKGFFNSRNIGKATRVM-EILERYGKPDVFAYNALISGFIKANQLENANRV 160

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L RMKS    PD++T+N++I S+  R   D   ++F+ L+    +PT+ T+  +I     
Sbjct: 161 LDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILI---EA 217

Query: 204 ARLQGKAEY---VFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKD 258
             L G  +    +  +M +    P  +TY  II   G C    V +A E+   LS  G  
Sbjct: 218 TILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIR--GMCKEMMVDKAFELLRSLSSRGCK 275

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
             + T N +L      G  +E + L     ++G  P+  T+ +L     +    E    L
Sbjct: 276 PDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNL 335

Query: 319 LKRMEQNGIVPN 330
           L+ M++ G+ P+
Sbjct: 336 LRSMKEKGLKPD 347


>gi|410110133|gb|AFV61146.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rhodocnemis]
          Length = 345

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 132/273 (48%), Gaps = 6/273 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ +FS ++  G  PD   YNA+I        KAK   +A     +MK      PN  +Y
Sbjct: 6   AISIFSRLKRLGFMPDLVAYNAMINVF----GKAKLFREARSLISEMK-TAGVMPNTTSY 60

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           + LL    + +   +  ++F E+ E     D+ T N ++D YG+ GM KE + +   M+ 
Sbjct: 61  STLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 120

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
              +P+++++N L+  YG  + F +   +F+ +     +  + T+NSMI+ YGK     K
Sbjct: 121 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEK 180

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  + Q+M +    P+ ITY  II+++G    + RA  +F +L   G ++       M+ 
Sbjct: 181 ANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIV 240

Query: 270 AYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKL 301
           AY   GL   A  LL E      +  D++ + L
Sbjct: 241 AYERAGLVAHAKRLLHELKRPDNIPRDTAIHIL 273



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 131/263 (49%), Gaps = 1/263 (0%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +KA+  F ++K +    P++V YN ++    +A+   +  +L  E+  + + P+  +Y+ 
Sbjct: 4   SKAISIFSRLKRLG-FMPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 62

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +    
Sbjct: 63  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P + ++N+++  YG A L G+A ++F+ M       + +TY  +I +YG      +A 
Sbjct: 123 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKAN 182

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +  E+   G +    T + ++  +   G    A +LF+   + GV  D   ++ +  AY
Sbjct: 183 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 242

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            +A +    ++LL  +++   +P
Sbjct: 243 ERAGLVAHAKRLLHELKRPDNIP 265



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 150/331 (45%), Gaps = 15/331 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  ++ D   Y+ +I V GK    R A  L SEM+ +G  P+ + Y+ L+T ++     
Sbjct: 14  KRLGFMPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVEN--- 70

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   +AL  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ 
Sbjct: 71  -KKFLEALSVFSEMREI-KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 128

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++  YG   +  E   +   M+    + +++T+N +I  YGK    +K   + + +
Sbjct: 129 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEM 188

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P   T++++I  +GK     +A  +FQK+ +       I ++ +I  Y     V
Sbjct: 189 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLV 248

Query: 243 SRAREIFDELSK---LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           + A+ +  EL +   + +D  +  L          G   EA  +F  + + G   D + +
Sbjct: 249 AHAKRLLHELKRPDNIPRDTAIHILAGA-------GRIEEATYVFRQAIDAGEVKDITVF 301

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + +    +K      V ++  +M   G  P+
Sbjct: 302 ERMIHLLSKYKKYSNVVEVFDKMRGLGYFPD 332



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 74/159 (46%)

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
           + K   +F  L      P L  +N+MI  +GKA+L  +A  +  +M      P+  +Y  
Sbjct: 3   YSKAISIFSRLKRLGFMPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 62

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           ++TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF     MG
Sbjct: 63  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 123 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 161



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 85/189 (44%)

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           S+ SR+K     PD++ +N +I+ +GK + F +   +   +  +   P   ++++++  Y
Sbjct: 8   SIFSRLKRLGFMPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMY 67

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            + +   +A  VF +M  +K      T   +I +YG       A ++F  + K+G +  V
Sbjct: 68  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 127

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            + N +L  Y    L  EA  LF       +  +  TY  +   Y K    E    L++ 
Sbjct: 128 VSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQE 187

Query: 322 MEQNGIVPN 330
           M+  GI PN
Sbjct: 188 MQSRGIEPN 196



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 73/155 (47%), Gaps = 9/155 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I++ GK G+   A  LF ++R+SG   D  ++  +I A+    ++A  +A A    
Sbjct: 200 YSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY----ERAGLVAHAKRLL 255

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++K     +P+ +  +  +   A A  +++   +F++  ++    DI  +  ++    K
Sbjct: 256 HELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSK 310

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
                 +  V  +M+     PD     +++++YGK
Sbjct: 311 YKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGK 345


>gi|302785283|ref|XP_002974413.1| hypothetical protein SELMODRAFT_174049 [Selaginella moellendorffii]
 gi|300158011|gb|EFJ24635.1| hypothetical protein SELMODRAFT_174049 [Selaginella moellendorffii]
          Length = 447

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 171/365 (46%), Gaps = 47/365 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  L+    K G+ + A+ L  EM+++G RP+  ++  +I   L T   A  +++AL +F
Sbjct: 33  YGILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRG-LCT---AGKVSQALLHF 88

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +++   E C PN+ TY+IL+ A  ++    +   L  E+ +   +P++ TYN ++D + K
Sbjct: 89  RRIG--EDCAPNVYTYSILVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRK 146

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              + E+  +L  M    C+ D+IT+ +++D + K  + D+  ++  +L    EK  + T
Sbjct: 147 LERLDEVLMLLKEMSQRGCRADVITYTMILDIFCKNNSIDEAYRLLNAL----EKRNVVT 202

Query: 194 FNSMI--INYGKARLQGKAEYVFQKMTAMKYTPSFI-----------------TYECIIT 234
           +NS+   ++  +     +A  + +KM      P+ +                  Y+ +++
Sbjct: 203 YNSLFTALSTAEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLS 262

Query: 235 MYGY-C--DNVS---------RAREIFDELSKLGK------DMKVSTLNAMLEAYCMNGL 276
           MY   C  D+VS          A   +D L  LG+       +   T+N ++  +C  G 
Sbjct: 263 MYSQGCKTDDVSYKILVVAFASAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGD 322

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
             EA  LF++    G  P + TY  L  A+ KA   +   KLL +M Q    PN   +  
Sbjct: 323 LHEAHQLFKSMCQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPNVITYNS 382

Query: 337 ALETF 341
            +++F
Sbjct: 383 IIKSF 387



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 133/319 (41%), Gaps = 32/319 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLHTRDKAKALAKA-- 69
           YS L+  + K GQ   A  L +EM   GC P+   YNALI     L   D+   L K   
Sbjct: 102 YSILVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDEVLMLLKEMS 161

Query: 70  --------------LGYFQKMKGMERC--------KPNIVTYNILLRACAQA---RNVDQ 104
                         L  F K   ++          K N+VTYN L  A + A   R  + 
Sbjct: 162 QRGCRADVITYTMILDIFCKNNSIDEAYRLLNALEKRNVVTYNSLFTALSTAEGDRTTEA 221

Query: 105 VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164
           ++ L K + E    P+   Y  V+    KN  + E   VL  M S  CK D +++ +L+ 
Sbjct: 222 LSLLEKMIQEGT-RPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQGCKTDDVSYKILVV 280

Query: 165 SYGKR-QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           ++    + +D +E +   ++ S       T N +I  + KA    +A  +F+ M      
Sbjct: 281 AFASAGRTYDSLE-LLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAHQLFKSMCQRGSI 339

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
           PS +TY  +I  +        A ++  ++ +      V T N++++++C      EA  +
Sbjct: 340 PSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPNVITYNSIIKSFCREQREEEARGI 399

Query: 284 FENSHNMGVTPDSSTYKLL 302
           F+   + G  PD  +Y  L
Sbjct: 400 FQMMVDSGCFPDRVSYTTL 418



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 15/198 (7%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL---HTRDKAKALAKAL 70
           Y  ++ ++ K  +   A  +   M + GC+ D   Y  L+ A      T D  + L + L
Sbjct: 240 YRTVLLMLCKNSRLDEAYQVLLSMYSQGCKTDDVSYKILVVAFASAGRTYDSLELLGRML 299

Query: 71  G--YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           G  Y    K M          N+++    +A ++ + + LFK + +    P   TYN ++
Sbjct: 300 GSGYILDTKTM----------NVVIHKFCKAGDLHEAHQLFKSMCQRGSIPSNVTYNTLI 349

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            A+ K         +L +M     KP++IT+N +I S+ + Q  ++   +F+ ++ S   
Sbjct: 350 GAFCKAQQPDTAVKLLHQMIQADFKPNVITYNSIIKSFCREQREEEARGIFQMMVDSGCF 409

Query: 189 PTLPTFNSMIINYGKARL 206
           P   ++ ++ I+   A +
Sbjct: 410 PDRVSYTTLKISKNDAAI 427



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 13/165 (7%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  L+      G+T  ++ L   M  SG   D    N +I    H   KA  L +A   F
Sbjct: 275 YKILVVAFASAGRTYDSLELLGRMLGSGYILDTKTMNVVI----HKFCKAGDLHEAHQLF 330

Query: 74  QKMKGMERCK----PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           + M     C+    P+ VTYN L+ A  +A+  D    L  ++ ++   P++ TYN ++ 
Sbjct: 331 KSM-----CQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPNVITYNSIIK 385

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
           ++ +    +E   +   M  + C PD +++  L  S      +D+
Sbjct: 386 SFCREQREEEARGIFQMMVDSGCFPDRVSYTTLKISKNDAAIYDQ 430


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 140/324 (43%), Gaps = 11/324 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ L+    K+G+   +  +   MR  G  PD   YN+LI        KAK + +A  Y
Sbjct: 462 VYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFC----KAKRMEEARTY 517

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +M    R +PN  TY   +   ++A  ++  +  F E+    + P++  Y  +++ + 
Sbjct: 518 LMEMLE-RRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHC 576

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G + E  SV   + S +   D+ T+++LI    +     KM + F      +EK  LP
Sbjct: 577 KEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRN---GKMHEAFGIFSELQEKGLLP 633

Query: 193 ---TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T+NS+I    K     KA  + ++M      P  +TY  +I        + RA+ +F
Sbjct: 634 NAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLF 693

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D++   G      T  AM++ YC +  PT A  L E     GV PD+  Y ++     K 
Sbjct: 694 DDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKE 753

Query: 310 NMKELVQKLLKRMEQNGIVPNKRF 333
              E    L + M + G      F
Sbjct: 754 EKFEKALDLFQEMLEKGFASTVSF 777



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 144/352 (40%), Gaps = 30/352 (8%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL-- 66
           A+  I++ L+  + K G+   A+ +  EM   G  PD   Y+ LI  H   ++ A+A   
Sbjct: 353 ANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFEL 412

Query: 67  ----------AKALGYFQKMKGMERC------------------KPNIVTYNILLRACAQ 98
                        L Y   + G+ RC                  KPN V Y  L+ A A+
Sbjct: 413 LDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAK 472

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
              V++   + + + E  + PD++ YN ++  + K   ++E  + L  M   + +P+  T
Sbjct: 473 EGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHT 532

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +   ID Y K    +  ++ F  ++     P +  + ++I  + K     +A  VF+ + 
Sbjct: 533 YGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFIL 592

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           + +      TY  +I        +  A  IF EL + G      T N+++   C  G   
Sbjct: 593 SRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVD 652

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +A  L E     G+ PD  TY +L     KA   E  + L   +E  G+ PN
Sbjct: 653 KASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPN 704



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 144/311 (46%), Gaps = 12/311 (3%)

Query: 24  KGQTRLAMW-LFSEMRNSGCRPDPSVYNALITAHL---HTRDKAKALAKALGYFQKMKGM 79
           KG      W +F  M      PD   Y  +I+AH    + +D  + L +         G 
Sbjct: 192 KGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEM--------GE 243

Query: 80  ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
           + C PN+VTYN+++    +AR +D+   L + + +  L PD+YTY+ +++ +      +E
Sbjct: 244 KGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSRE 303

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
            + +L  M     KP+ IT+N LID + ++   ++  ++   ++    +  L  +N+++ 
Sbjct: 304 AKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLN 363

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
              KA    KA  + Q+M      P   TY  +I  +    N++RA E+ DE+ K     
Sbjct: 364 GVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAP 423

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            V T + ++   C  G     + +       G+ P++  Y  L  A+ K    E  + +L
Sbjct: 424 TVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMIL 483

Query: 320 KRMEQNGIVPN 330
           +RM + GI+P+
Sbjct: 484 ERMREQGILPD 494



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/339 (21%), Positives = 146/339 (43%), Gaps = 9/339 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKA 65
           + D   Y+ +I+   K G  + A  +  EM   GC P+   YN +I      R  D+A  
Sbjct: 212 LPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIE 271

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L +++      KG+    P++ TY+IL+      +   +   +  E+ +  L P+  TYN
Sbjct: 272 LKRSM----VDKGL---VPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYN 324

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++D + + G I++   +   M +   + ++I +N L++   K    +K  ++ + +M  
Sbjct: 325 ALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEK 384

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
             +P   T++ +I  + + +   +A  +  +M   K  P+ +TY  II     C N+   
Sbjct: 385 GVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGT 444

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             I  E+   G          ++ A+   G   E+ ++ E     G+ PD   Y  L   
Sbjct: 445 NAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIG 504

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           + KA   E  +  L  M +  + PN   +   ++ +S +
Sbjct: 505 FCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKA 543



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 151/326 (46%), Gaps = 11/326 (3%)

Query: 6   WYIADTGIYSKLIAVMGKKGQTRLAMW--LFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           WY    G  S LI  + +   + LA+   +    R+    P+  +++ L+ ++     K 
Sbjct: 107 WY----GPASDLIKCIIRNSDSPLAVLGSIVKCYRSCNGSPNSVIFDMLMDSY----RKM 158

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L +A+  F   K  E  +P++++ N LL    +   V+    +F  +    + PD+YT
Sbjct: 159 GFLVEAVNVFLGPKNFEF-RPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYT 217

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++ A+ K G +K+ + VL  M    C P+++T+N++I    + +  D+  ++ +S++
Sbjct: 218 YTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMV 277

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                P L T++ +I  +   +   +A+ +  +M  +   P  ITY  +I  +    ++ 
Sbjct: 278 DKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIE 337

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           +A  I DE+   G +  +   N +L   C  G   +A  + +     GV PDS TY LL 
Sbjct: 338 QAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLI 397

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVP 329
           + + +        +LL  M++  + P
Sbjct: 398 EGHCRGQNMARAFELLDEMKKRKLAP 423



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 151/349 (43%), Gaps = 17/349 (4%)

Query: 10   DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
            D   Y+ LI  + K G+   A  LF ++   G  P+   Y A++  +  +++   A    
Sbjct: 669  DIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAA---- 724

Query: 70   LGYFQKMKGM--ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
               FQ ++ M      P+   YN++L  C +    ++   LF+E+ E   A  + ++N +
Sbjct: 725  ---FQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTL 780

Query: 128  MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
            ++ Y K+G ++E   +L  M   Q  P+ +T+  LID   K     + ++++  +     
Sbjct: 781  IEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNV 840

Query: 188  KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
             PT  T+ S++  Y       +   +F++M A    P  +TY  +I  Y    NV  A +
Sbjct: 841  MPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACK 900

Query: 248  IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
            + DE+   G  M V+  +A+++A C      E   L       G      T  ++ + + 
Sbjct: 901  LKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQ 960

Query: 308  KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTD 356
             A   +   ++L+ M + G V N         +    + G+Q+G+   D
Sbjct: 961  IAGNMDEAAEVLRSMVKFGWVSNTT-------SLGDLVDGNQNGANSED 1002



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 160/378 (42%), Gaps = 51/378 (13%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y  LI     + ++R A  +  EM + G +P+P  YNALI   +   D  +A  
Sbjct: 282 VPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQA-- 339

Query: 68  KALGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
                F+    M  C  + N++ +N LL    +A  +++   + +E+ E  + PD  TY+
Sbjct: 340 -----FRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYS 394

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY---GKRQAFDKMEQ----- 177
            +++ + +   +     +L  MK  +  P ++T++++I+     G  Q  + + +     
Sbjct: 395 LLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMN 454

Query: 178 -------VFKSLM--HSKEK------------------PTLPTFNSMIINYGKARLQGKA 210
                  V+ +LM  H+KE                   P +  +NS+II + KA+   +A
Sbjct: 455 GLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEA 514

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
                +M   +  P+  TY   I  Y     +  A   F+E+   G    V    A++E 
Sbjct: 515 RTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEG 574

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +C  G  TEA  +F    +  V  D  TY +L    ++         +   +++ G++PN
Sbjct: 575 HCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPN 634

Query: 331 KRFFLEALETFSSSLAGS 348
                    T++S ++GS
Sbjct: 635 AF-------TYNSLISGS 645



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/376 (22%), Positives = 148/376 (39%), Gaps = 45/376 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +++  + D   Y+ LI    K  +   A     EM     RP+   Y A I  +     K
Sbjct: 487 REQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGY----SK 542

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A  +  A  YF +M       PN+  Y  L+    +  NV +  ++F+ +    +  D+ 
Sbjct: 543 AGEMEIADRYFNEMLSC-GVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQ 601

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY+ ++    +NG + E   + S ++     P+  T+N LI    K+   DK  Q+ + +
Sbjct: 602 TYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM 661

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--- 239
                 P + T+N +I    KA    +A+ +F  +     TP+ +TY  ++   GYC   
Sbjct: 662 CIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVD--GYCKSK 719

Query: 240 ----------------------------------DNVSRAREIFDELSKLGKDMKVSTLN 265
                                             +   +A ++F E+ + G    VS  N
Sbjct: 720 NPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVS-FN 778

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            ++E YC +G   EA+ L E        P+  TY  L     KA M    ++L   M++ 
Sbjct: 779 TLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQER 838

Query: 326 GIVPNKRFFLEALETF 341
            ++P  + +   L  +
Sbjct: 839 NVMPTAKTYTSLLHGY 854


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1080

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 149/318 (46%), Gaps = 7/318 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L+   GK+      +WL  EM   G +P+   Y    T  +    +AK   +A    
Sbjct: 198 YSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSY----TICIRVLGQAKRFDEAYRIL 253

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM+  E CKP+++T+ +L++    A  +     +F ++ +S   PD  TY  ++D +G 
Sbjct: 254 AKMEN-EGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGD 312

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-RQAFDKMEQVFKSLMHSKEKPTLP 192
           NG  + +  + + MK++    +++ +  +ID+  +  + F+ +E +F  +      P   
Sbjct: 313 NGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALE-MFDEMKQKGIVPEQY 371

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           ++NS+I  + KA   G A  +F+ M      P+  T+   I  YG      +A + ++ +
Sbjct: 372 SYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELM 431

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G    V   NA+L     +G    A  +F     MGV+PD+ TY ++ K  +KA+  
Sbjct: 432 KSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKF 491

Query: 313 ELVQKLLKRMEQNGIVPN 330
           +   K+   M +N  VP+
Sbjct: 492 DEAVKIFYDMIENNCVPD 509



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 148/328 (45%), Gaps = 9/328 (2%)

Query: 11   TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
            TG+Y+ LI  +  +    +A  LF+EM+  GC PD   YN L+ A      K+  + + L
Sbjct: 755  TGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDA----MGKSMRIEEML 810

Query: 71   GYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
               ++M  KG E      VTYN ++    ++R ++Q   L+  L     +P   TY  ++
Sbjct: 811  KVQEEMHRKGYES---TYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLL 867

Query: 129  DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            D   K G I++ E++ + M    CK +   +N+L++ +      +K+  +F+ ++     
Sbjct: 868  DGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGIN 927

Query: 189  PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
            P + ++  +I    KA         F+++  M   P  ITY  +I   G    +  A  +
Sbjct: 928  PDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSL 987

Query: 249  FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            F+E+ K G    + T N+++      G   EA  ++E     G  P+  TY  L + Y+ 
Sbjct: 988  FNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSV 1047

Query: 309  ANMKELVQKLLKRMEQNGIVPNKRFFLE 336
            +   +       RM   G +PN   +++
Sbjct: 1048 SGSTDSAYAAYGRMIVGGCLPNSSTYMQ 1075



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 154/333 (46%), Gaps = 12/333 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ+Q    A+ G ++ +   +G +G  R A      M+ +G   +   YN L+    +  
Sbjct: 116 MQRQ-IVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLV----YFL 170

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K+    +AL  ++ M  ++   P++ TY++L+ A  + R+V+ V  L +E+    + P+
Sbjct: 171 VKSGFDREALEVYRVMM-VDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPN 229

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           +Y+Y   +   G+     E   +L++M++  CKPD+IT  +LI            + VF 
Sbjct: 230 VYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFW 289

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYG 237
            +  S +KP   T+ +++  +G     G ++ V +   AMK   Y  + + Y  +I    
Sbjct: 290 KMKKSDQKPDRVTYITLLDKFGD---NGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALC 346

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
               V  A E+FDE+ + G   +  + N+++  +       +A  LF++    G  P+  
Sbjct: 347 QVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGY 406

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           T+ L    Y K+       +  + M+  GIVP+
Sbjct: 407 THVLFINYYGKSGESIKAIQRYELMKSKGIVPD 439



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 129/287 (44%), Gaps = 7/287 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + + G+   A+ +F EM+  G  P+   YN+LI+  L    KA     AL  F
Sbjct: 338 YTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFL----KADRFGDALELF 393

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M  +   KPN  T+ + +    ++    +    ++ +    + PD+   N V+    K
Sbjct: 394 KHMD-IHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAK 452

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G +   + V   +K+    PD IT+ ++I    K   FD+  ++F  ++ +   P +  
Sbjct: 453 SGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLA 512

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            NS+I    KA    +A  +F ++  M   P+  TY  ++   G    V     + +E+ 
Sbjct: 513 VNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMY 572

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEA-DLLFENSHNMGVTPDSSTY 299
                  + T N +L+  C NG   +A D+L+  +   G  PD S+Y
Sbjct: 573 HSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMT-TKGCIPDLSSY 618



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 135/333 (40%), Gaps = 29/333 (8%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA-- 67
           D   ++ LI V+   G+   A  +F +M+ S  +PD   Y  L+       D    +   
Sbjct: 264 DVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIW 323

Query: 68  ---KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
              KA GY            N+V Y  ++ A  Q   V +   +F E+ +  + P+ Y+Y
Sbjct: 324 NAMKADGY----------NDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSY 373

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++  + K     +   +   M  +  KP+  T  L I+ YGK     K  Q ++ +  
Sbjct: 374 NSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKS 433

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P +   N+++    K+   G A+ VF ++ AM  +P  ITY  +I     C   S+
Sbjct: 434 KGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKC---CSKASK 490

Query: 245 AREIFDELSKLGKDM-------KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
               FDE  K+  DM        V  +N++++     G   EA  +F     M + P   
Sbjct: 491 ----FDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDG 546

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           TY  L     +    + V  LL+ M  +   PN
Sbjct: 547 TYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPN 579



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 116/261 (44%), Gaps = 10/261 (3%)

Query: 22  GKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER 81
           GK G++  A+  +  M++ G  PD    NA+    L    K+  L  A   F ++K M  
Sbjct: 416 GKSGESIKAIQRYELMKSKGIVPDVVAGNAV----LFGLAKSGRLGMAKRVFHELKAM-G 470

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
             P+ +TY ++++ C++A   D+   +F ++ E+   PD+   N ++D   K G   E  
Sbjct: 471 VSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAW 530

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
            +  ++K    +P   T+N L+   G+     ++  + + + HS   P L T+N+++   
Sbjct: 531 RIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCL 590

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM-- 259
            K      A  +   MT     P   +Y  +I  YG      R  E F    ++ K +  
Sbjct: 591 CKNGAVNDALDMLYSMTTKGCIPDLSSYNTVI--YGLVKE-ERYNEAFSIFCQMKKVLIP 647

Query: 260 KVSTLNAMLEAYCMNGLPTEA 280
             +TL  +L ++   GL  EA
Sbjct: 648 DYATLCTILPSFVKIGLMKEA 668



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 5/186 (2%)

Query: 9    ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            A+  IY+ L+      G T     LF +M + G  PD   Y  +I     T  KA  L  
Sbjct: 893  ANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIII----DTLCKAGQLND 948

Query: 69   ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
             L YF+++  M   +P+++TYN+L+    +++ +++  +LF E+ +  + P++YTYN ++
Sbjct: 949  GLTYFRQLLEM-GLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLI 1007

Query: 129  DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
               GK G   E   +   + +   KP++ T+N LI  Y    + D     +  ++     
Sbjct: 1008 LHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCL 1067

Query: 189  PTLPTF 194
            P   T+
Sbjct: 1068 PNSSTY 1073



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/380 (20%), Positives = 149/380 (39%), Gaps = 40/380 (10%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           + K +  + D    + ++  + K G+  +A  +F E++  G  PD   Y  +I       
Sbjct: 430 LMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCC---- 485

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            KA    +A+  F  M     C P+++  N L+    +A   D+   +F +L E  L P 
Sbjct: 486 SKASKFDEAVKIFYDMI-ENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPT 544

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TYN ++   G+ G +KE+  +L  M  +   P++IT+N ++D   K  A +    +  
Sbjct: 545 DGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLY 604

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM---------TAMKYTPSFITY-- 229
           S+      P L ++N++I    K     +A  +F +M         T     PSF+    
Sbjct: 605 SMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGL 664

Query: 230 ----------------------ECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLN 265
                                  C   M G      + ++ E  + ++  G  +    L 
Sbjct: 665 MKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLC 724

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            +++  C      EA  L +   + GV+  +  Y  L       N+ ++ + L   M++ 
Sbjct: 725 PLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKEL 784

Query: 326 GIVPNKRFFLEALETFSSSL 345
           G  P++  +   L+    S+
Sbjct: 785 GCGPDEFTYNLLLDAMGKSM 804



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 83/221 (37%), Gaps = 35/221 (15%)

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++       +I   E + + MK   C PD  T+NLL+D+ GK    ++M +V +  M
Sbjct: 758 YNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKV-QEEM 816

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
           H K                                   Y  +++TY  II+       + 
Sbjct: 817 HRK----------------------------------GYESTYVTYNTIISGLVKSRRLE 842

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           +A +++  L   G      T   +L+     G   +A+ LF      G   + + Y +L 
Sbjct: 843 QAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILL 902

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             +  A   E V  L + M   GI P+ + +   ++T   +
Sbjct: 903 NGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKA 943



 Score = 38.1 bits (87), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 1/129 (0%)

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
           G  R+   AE VF  M       +  T+  I    G    +  A      + + G  +  
Sbjct: 102 GHGRVGDMAE-VFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNA 160

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T N ++     +G   EA  ++      GV P   TY +L  A+ K    E V  LL+ 
Sbjct: 161 YTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLRE 220

Query: 322 MEQNGIVPN 330
           ME +G+ PN
Sbjct: 221 MEAHGVKPN 229


>gi|410110137|gb|AFV61148.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rubella]
          Length = 440

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 142/302 (47%), Gaps = 5/302 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF EMR     PD   Y+ LIT H     K      AL + QKM+  +R   ++V Y+ L
Sbjct: 2   LFDEMRQRALSPDRYTYSTLIT-HF---GKEGLFDAALSWLQKME-QDRVPGDLVLYSNL 56

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  S++S MK+   
Sbjct: 57  IELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGV 116

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+  +  +A+ 
Sbjct: 117 MPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLSMAKEADK 176

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +F  M  M   PS +++  ++ +YG  +    A  +F  + +   +  V T N+M+  Y 
Sbjct: 177 LFWGMRKMGIEPSVVSFNTLLRVYGDAELFGEAIHLFRLMQRKNIEQTVVTYNSMIMIYG 236

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
                 +A+ L +   + G+ P+S TY  +   + K    +    L +++  +G+  ++ 
Sbjct: 237 KTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQI 296

Query: 333 FF 334
            F
Sbjct: 297 LF 298



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 155/327 (47%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 7   RQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 66

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  
Sbjct: 67  SKAIS----IFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 121

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLSMAKEADKLFWGM 181

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P++ +FN+++  YG A L G+A ++F+ M       + +TY  +I +YG     
Sbjct: 182 RKMGIEPSVVSFNTLLRVYGDAELFGEAIHLFRLMQRKNIEQTVVTYNSMIMIYGKTLEH 241

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + GV  D   ++ +
Sbjct: 242 EKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTM 301

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  +++   +P
Sbjct: 302 IVAYERAGLVAHAKRLLHELKRPDNIP 328



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/360 (21%), Positives = 148/360 (41%), Gaps = 42/360 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEM+ +G  P+ + Y+ L+T ++     
Sbjct: 77  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVEN--- 133

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +P++V+
Sbjct: 134 -KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLSMAKEADKLFWGMRKMGIEPSVVS 192

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           +N LLR    A    +   LF+ +    +   + TYN ++  YGK    ++  +++  M+
Sbjct: 193 FNTLLRVYGDAELFGEAIHLFRLMQRKNIEQTVVTYNSMIMIYGKTLEHEKANNLIQEMQ 252

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           S   +P+ IT++ +I  +GK    D+   +F+ L  S  +     F +MI+ Y +A L  
Sbjct: 253 SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVA 312

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++      P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 313 HAKRLLHELK----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMI 368

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
                    +    +F+    +G  PDS+   ++  AY K    +    +   M++ G V
Sbjct: 369 HLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEMQEVGCV 428



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 110/259 (42%), Gaps = 35/259 (13%)

Query: 107 ALFKELHESILAPDIYTYNGVMDAYGKNGM-------IKEME------------------ 141
            LF E+ +  L+PD YTY+ ++  +GK G+       +++ME                  
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60

Query: 142 ----------SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
                     S+ SR+K +   PD++ +N +I+ +GK + F +   +   +  +   P  
Sbjct: 61  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 120

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            ++++++  Y + +   +A  VF +M  +K      T   +I +YG       A ++F  
Sbjct: 121 TSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLSMAKEADKLFWG 180

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + K+G +  V + N +L  Y    L  EA  LF       +     TY  +   Y K   
Sbjct: 181 MRKMGIEPSVVSFNTLLRVYGDAELFGEAIHLFRLMQRKNIEQTVVTYNSMIMIYGKTLE 240

Query: 312 KELVQKLLKRMEQNGIVPN 330
            E    L++ M+  GI PN
Sbjct: 241 HEKANNLIQEMQSRGIEPN 259


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 142/344 (41%), Gaps = 40/344 (11%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ LI    K G  + A+WLF +++ +G  P    YN L+  +    D    L 
Sbjct: 369 LPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGD----LE 424

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY----- 122
           +A  + Q+M   + C+P++ TY IL+    + RN+  V   F E+    L PD +     
Sbjct: 425 EARRFKQEMV-EQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTR 483

Query: 123 ------------------------------TYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
                                         TYN  +D   K+G +K+   +  +M S+  
Sbjct: 484 ISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGL 543

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           +PD IT+  LI ++ +R    +   +F  ++ S   P+  T+   I  Y +      A  
Sbjct: 544 QPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYG 603

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
            FQKM      P+ +TY  +I         + A + F E+ + G      T   +++  C
Sbjct: 604 WFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNC 663

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
             G   EA  L+   H  G+ PD  T+  L+K + +   K  +Q
Sbjct: 664 KEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGFDEGQSKHAIQ 707



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 144/353 (40%), Gaps = 40/353 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI     +G    A  L  EM N G  P    YN +I     + +   A  K    F
Sbjct: 305 FNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMK----F 360

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+ M    P+++TYN L+    +A N+ +   LF +L  + LAP + TYN ++D Y +
Sbjct: 361 VEMRAMG-LLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCR 419

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++E       M    C+PD+ T+ +L++   K +    + + F  ++    +P    
Sbjct: 420 LGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFA 479

Query: 194 FNSMI-------------------INYGKAR--------LQG-------KAEYV-FQKMT 218
           +N+ I                   I+ G +         L G       K  YV + KM 
Sbjct: 480 YNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMV 539

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           +    P  ITY C+I  +     +  AR+IFD +   G      T    + AYC  G   
Sbjct: 540 SDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLY 599

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
            A   F+     GV P+  TY +L  A  +     L  +    M + G+ PNK
Sbjct: 600 SAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNK 652



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 115/249 (46%), Gaps = 3/249 (1%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P I   N++LRA       D + +++ E+ +  + P I TYN ++D++ + G + +   +
Sbjct: 194 PFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKL 253

Query: 144 LSRMKSNQ--CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           L  M++    C P  +T+N++I+   ++   +K  Q+   +  SK+     TFN +I  Y
Sbjct: 254 LREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMSKKASAF-TFNPLITGY 312

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
                  KA  +  +M      P+ +TY  II       NV  AR  F E+  +G    +
Sbjct: 313 FARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDL 372

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T N+++  YC  G   EA  LF +    G+ P   TY +L   Y +    E  ++  + 
Sbjct: 373 ITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQE 432

Query: 322 MEQNGIVPN 330
           M + G  P+
Sbjct: 433 MVEQGCQPD 441



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 136/317 (42%), Gaps = 6/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + +KG+   A  L   MR S  +     +N LIT +      A+   +  G  
Sbjct: 271 YNVVINGLARKGELEKAAQLVDRMRMSK-KASAFTFNPLITGYF-----ARGSVEKAGAL 324

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           Q     E   P +VTYN ++    ++ NV+     F E+    L PD+ TYN +++ Y K
Sbjct: 325 QLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCK 384

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +KE   +   +K     P ++T+N+L+D Y +    ++  +  + ++    +P + T
Sbjct: 385 AGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVST 444

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +  ++    K R        F +M +    P    Y   I+      + S A ++ + + 
Sbjct: 445 YTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMI 504

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G      T N  L+  C +G   +A +L+    + G+ PD  TY  L  A+ +     
Sbjct: 505 SRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLR 564

Query: 314 LVQKLLKRMEQNGIVPN 330
             + +   M  +G+ P+
Sbjct: 565 EARDIFDGMLVSGLPPS 581



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 77/172 (44%), Gaps = 8/172 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI    ++G+ R A  +F  M  SG  P    Y   I    H   +   L  A
Sbjct: 546 DCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFI----HAYCRRGNLYSA 601

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            G+FQKM   E  +PN VTYN+L+ A  +    +     F E+ E  L+P+ YTY  ++D
Sbjct: 602 YGWFQKML-EEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLID 660

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ---AFDKMEQV 178
              K G  +E   + S M  +   PD  T N L   + + Q   A   ME V
Sbjct: 661 GNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGFDEGQSKHAIQYMENV 712



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 9/209 (4%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           +DT  Y+  +  + K G  + A  L+ +M + G +PD   Y  LI AH     +   L +
Sbjct: 510 SDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHC----ERGRLRE 565

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A   F  M  +    P+ VTY + + A  +  N+      F+++ E  + P+  TYN ++
Sbjct: 566 ARDIFDGML-VSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLI 624

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            A  + G           M      P+  T+ LLID   K   +++  +++  +      
Sbjct: 625 HALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIH 684

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           P   T N++   +     +G++++  Q M
Sbjct: 685 PDHCTHNALFKGFD----EGQSKHAIQYM 709


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 149/349 (42%), Gaps = 13/349 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y A    Y+ LI  + K G    A  L  +M ++GC P+   Y ALI      R    A+
Sbjct: 41  YDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAI 100

Query: 67  AKALGYFQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELH-ESILAPDIYT 123
                  Q +K M R  C+P++VTYN L+     A  +D    + +EL  ES   PD+ T
Sbjct: 101 -------QTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVT 153

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN  +    K G + +   +L  M      PD++TF  +I    K    D   QVFK ++
Sbjct: 154 YNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGML 213

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                P   T++ M+ N  +A      E V + M    +     TY  +I       ++ 
Sbjct: 214 ERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIE 273

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTEADLLFENSHNMGVTPDSSTYKLL 302
            A   +++  + G  M+V T NA + A C +G  P   ++L     + G  P+  +Y  +
Sbjct: 274 SASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIES-GSLPNLLSYNFV 332

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIV-PNKRFFLEALETFSSSLAGSQS 350
                K+   +   KL ++M  +G   P+  FF   +  F  +   SQ+
Sbjct: 333 IDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQA 381



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 111/240 (46%), Gaps = 3/240 (1%)

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN L+    +AR       L   +  +     + TY  ++D   K+G +   +++L +M 
Sbjct: 13  YNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMA 72

Query: 149 SNQCKPDIITFNLLIDSYGK-RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
              C P+++T+  LID   K R+  D ++ V K ++ S  +P L T+NS+I     A   
Sbjct: 73  DAGCAPNVVTYTALIDGLCKARRPHDAIQTV-KRMLRSGCEPDLVTYNSLIHGLCMANRM 131

Query: 208 GKAEYVFQK-MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
             A  V Q+ M      P  +TY   I+       + +  E+ +E+ + G    V T  +
Sbjct: 132 DDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCS 191

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           ++   C      +A  +F+     G  PDS TY ++    ++AN  + V+++L+ M ++G
Sbjct: 192 IISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSG 251



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 92/226 (40%), Gaps = 5/226 (2%)

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D   YN ++    K    +    +L  M +N     ++T+  LID   K    D  + + 
Sbjct: 9   DAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALL 68

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           + +  +   P + T+ ++I    KAR    A    ++M      P  +TY  +I  +G C
Sbjct: 69  QKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLI--HGLC 126

Query: 240 --DNVSRAREIFDELS-KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
             + +  A  +  EL  + G+   V T N  +   C  G   +   + E     G++PD 
Sbjct: 127 MANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDV 186

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            T+  +     KAN  +   ++ K M + G VP+   +   L+  S
Sbjct: 187 VTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLS 232



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 98/220 (44%), Gaps = 9/220 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R  + D+  YS ++  + +  +      +   M  SG     + Y  LI A +   D  
Sbjct: 214 ERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIE 273

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            A   +  Y Q M+    C   + T+N  + A  ++        +   + ES   P++ +
Sbjct: 274 SA---SWAYEQAMEA--GCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLS 328

Query: 124 YNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           YN V+D   K+G + +   +  +M  S  CKPD+I FN LI  + K     + +Q+ K  
Sbjct: 329 YNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKE- 387

Query: 183 MHSKE--KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
           M +K    P + T+N+MI    K     +A+ + ++M A+
Sbjct: 388 MKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEMQAV 427


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 149/357 (41%), Gaps = 44/357 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I  + ++GQ   A  LF EM + G  P+   YN L    LH    +    +A
Sbjct: 205 DVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCL----LHGYCSSGKPKEA 260

Query: 70  LGYFQKM--KGMERCKPNIVTYNILL-RACAQARNVD----------------------- 103
           +G F+KM   G+E   P++VTYN L+   C   R+++                       
Sbjct: 261 IGIFRKMCRDGVE---PDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTL 317

Query: 104 -----------QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
                      Q++ L   +  +   PD Y +N ++ AY K+GM+ E     S+M+    
Sbjct: 318 LHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGL 377

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            P+I+T+  ++D+  +    D     F  L+     P    F ++I          KAE 
Sbjct: 378 HPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEE 437

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +  +M      P+ I +  ++        V+RA+ IFD + ++     V T   +++ YC
Sbjct: 438 LAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYC 497

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           ++G   EA  L E     GV P+  TY  +   Y K    E    L ++M   G+ P
Sbjct: 498 LDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNP 554



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 137/321 (42%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  I++ LI    K G    AM  FS+MR  G  P+   Y  ++ A      +   +  A
Sbjct: 345 DHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALC----RVGKVDDA 400

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +  F ++   E   PN V +  L+         D+   L  E+    + P+   +N +++
Sbjct: 401 MSQFDRLIS-EGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLN 459

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K GM+   +++   M     + D+IT+  LID Y      D+  ++ + ++    KP
Sbjct: 460 HLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKP 519

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T+N++I  Y K      A  +F++M +    P  + Y  I+        ++ A+E++
Sbjct: 520 NEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELY 579

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             + K G  + + T N +L+  C N    +A  +F N   +     + T+ ++  A  K 
Sbjct: 580 LWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKG 639

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +  + L   +   G+VPN
Sbjct: 640 GRHDEAKDLFASLLARGLVPN 660



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 135/321 (42%), Gaps = 21/321 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+  + K G++  A  +F  M   G +PD S+Y  L+  +             
Sbjct: 275 DVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGY-----------AT 323

Query: 70  LGYFQKMKGM------ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            GY  +M  +         +P+   +NIL+ A A+   VD+    F ++ +  L P+I T
Sbjct: 324 EGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVT 383

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  VMDA  + G + +  S   R+ S    P+ + F  LI        +DK E++   ++
Sbjct: 384 YGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMI 443

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                P    FN+++ +  K  +  +A+ +F  M  +      ITY  +I  Y     V 
Sbjct: 444 GRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVD 503

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL-- 301
            A ++ + +   G      T N ++  YC NG   +A  LF    + GV P    Y    
Sbjct: 504 EATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTIL 563

Query: 302 --LYKAYTKANMKELVQKLLK 320
             L++    A  KEL   ++K
Sbjct: 564 HGLFQTRRIAAAKELYLWMIK 584



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 141/359 (39%), Gaps = 48/359 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEM----RNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           Y+ L+  +  + +++ A+ L   M       GC PD   Y  +I   L    +   L KA
Sbjct: 170 YNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLL----REGQLDKA 225

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F +M  +GM    PN +TYN LL     +    +   +F+++    + PD+ TYN +
Sbjct: 226 YCLFDEMLDQGMS---PNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTL 282

Query: 128 MDAYGKNG-----------MIK------------------------EMESVLSRMKSNQC 152
           M    KNG           M+K                        +M  +L  M  N  
Sbjct: 283 MVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGT 342

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           +PD   FN+LI +Y K    D+    F  +      P + T+ +++    +      A  
Sbjct: 343 QPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMS 402

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
            F ++ +   TP+ + +  +I     CD   +A E+  E+   G        N +L   C
Sbjct: 403 QFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLC 462

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             G+ T A  +F+    + V  D  TY  L   Y      +   KLL+ M  +G+ PN+
Sbjct: 463 KEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNE 521



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 136/329 (41%), Gaps = 2/329 (0%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWL-FSEMRNSGCRPDPSVYNALITAHLHTRDKAKA 65
           + A    +S L+  +    +T  AM +    M   GC P+   YN L+   L   ++++ 
Sbjct: 127 WTAQAITFSPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKG-LCDENRSQQ 185

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
               L           C P++V+Y  ++    +   +D+   LF E+ +  ++P+  TYN
Sbjct: 186 ALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYN 245

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++  Y  +G  KE   +  +M  +  +PD++T+N L+    K     +  +VF S++  
Sbjct: 246 CLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKK 305

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
             KP    + +++  Y       +   +   M      P    +  +I  Y     V  A
Sbjct: 306 GHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEA 365

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
              F ++ + G    + T   +++A C  G   +A   F+   + G+TP+   ++ L   
Sbjct: 366 MLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHG 425

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFF 334
               +  +  ++L   M   GI PN  FF
Sbjct: 426 LCACDKWDKAEELAVEMIGRGICPNTIFF 454



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 121/275 (44%), Gaps = 14/275 (5%)

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A AL  F +M   + C     TY+I++  C++A ++D   A    +  +       T++ 
Sbjct: 82  AVALSLFNRMPRADLC-----TYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSP 136

Query: 127 VMDAYGKNGMIKE-MESVLSRMKSNQCKPDIITFNLLI----DSYGKRQAFDKMEQVFKS 181
           ++     +    + M+  L RM +  C P+  ++N+L+    D    +QA   +  +   
Sbjct: 137 LLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMAD 196

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
                  P + ++ ++I    +     KA  +F +M     +P+ ITY C+  ++GYC +
Sbjct: 197 DTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCL--LHGYCSS 254

Query: 242 --VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
                A  IF ++ + G +  V T N ++   C NG   EA  +F++    G  PDSS Y
Sbjct: 255 GKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIY 314

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
             L   Y        + +LL  M +NG  P+   F
Sbjct: 315 GTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIF 349



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 17/192 (8%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D   Y+ LI      G+   A  L   M   G +P+   YN +I  +     K   +  
Sbjct: 484 CDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYC----KNGRIED 539

Query: 69  ALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A   F++M  KG+    P IV Y+ +L    Q R +     L+  + +  +   I TYN 
Sbjct: 540 ACSLFRQMASKGVN---PGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNI 596

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDII----TFNLLIDSYGKRQAFDKMEQVFKSL 182
           ++    +N    +      RM  N C  D      TFN++ID+  K    D+ + +F SL
Sbjct: 597 ILQGLCQNNCTDDA----LRMFHNLCLIDFHLQNRTFNIMIDALLKGGRHDEAKDLFASL 652

Query: 183 MHSKEKPTLPTF 194
           +     P + T+
Sbjct: 653 LARGLVPNVVTY 664



 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 5/152 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I    K G+   A  LF +M + G  P   +Y+ ++     TR  A A  K L  +
Sbjct: 524 YNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAA--KELYLW 581

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
               G+   K  I TYNI+L+   Q    D    +F  L          T+N ++DA  K
Sbjct: 582 MIKCGI---KLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLK 638

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
            G   E + + + + +    P+++T+ L++ S
Sbjct: 639 GGRHDEAKDLFASLLARGLVPNVVTYWLMMKS 670


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 147/330 (44%), Gaps = 10/330 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ LI    K+G+   A  LF EM   G   +   Y  LI    H   K     +    
Sbjct: 200 IYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLI----HGLFKNGIKKQGFEM 255

Query: 73  FQKMKGMERCKPNIVTYNILL-RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           ++KM+  +   PN+ TYN ++ + C   R  D    LF E+ E  ++ +I TYN ++   
Sbjct: 256 YEKMQ-EDGVFPNLYTYNCVMNQHCKDGRTKDAFK-LFDEMRERGVSCNIVTYNTLIGGL 313

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            +     E   V+ +MKS+   P++IT+N LID +       K   + + L      P+L
Sbjct: 314 CREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSL 373

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+N ++  + K      A  V ++M      PS ITY  +I  +   DN+ +A ++   
Sbjct: 374 VTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSP 433

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + +LG    V T + ++  +C+ G   EA  LF+      + P+   Y  +   Y K   
Sbjct: 434 MEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGS 493

Query: 312 KELVQKLLKRMEQNGIVPNK---RFFLEAL 338
                +L + ME+  + PN    R+ +E L
Sbjct: 494 SYRALRLFREMEEKELPPNVASYRYMIEVL 523



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 129/285 (45%), Gaps = 9/285 (3%)

Query: 23  KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82
           K G+T+ A  LF EMR  G   +   YN LI   L    KA    K +    +MK  +  
Sbjct: 280 KDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGG-LCREMKANEANKVM---DQMKS-DGI 334

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
            PN++TYN L+        + +  +L ++L    L+P + TYN ++  + K G       
Sbjct: 335 NPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGK 394

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           V+  M+    KP  IT+ +LID++ +    +K  Q+   +      P + T++ +I  + 
Sbjct: 395 VVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFC 454

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS--RAREIFDELSKLGKDMK 260
                 +A  +F+ M A K  P+ + Y  ++   GYC   S  RA  +F E+ +      
Sbjct: 455 IKGQMNEASRLFKLMVAKKLEPNKVIYNTMV--LGYCKEGSSYRALRLFREMEEKELPPN 512

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           V++   M+E  C      EA+ L E   + G+ P  S   L+ +A
Sbjct: 513 VASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPSDSILNLISRA 557



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 145/331 (43%), Gaps = 21/331 (6%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           +A+   Y+ LI  + K G  +    ++ +M+  G  P+   YN ++  H     K     
Sbjct: 230 VANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHC----KDGRTK 285

Query: 68  KALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            A   F +M+  ER    NIVTYN L+    +    ++ N +  ++    + P++ TYN 
Sbjct: 286 DAFKLFDEMR--ERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNT 343

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++D +   G + +  S+   +KS    P ++T+N+L+  + K+       +V K +    
Sbjct: 344 LIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERG 403

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            KP+  T+  +I  + +     KA  +   M  +  TP   TY  +I  +G+C      +
Sbjct: 404 IKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLI--HGFC-----IK 456

Query: 247 EIFDELSKLGKDMKVSTL-------NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
              +E S+L K M    L       N M+  YC  G    A  LF       + P+ ++Y
Sbjct: 457 GQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASY 516

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + + +   K    +  + L+++M   GI P+
Sbjct: 517 RYMIEVLCKERKSKEAEGLVEKMIDTGIDPS 547



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/311 (21%), Positives = 144/311 (46%), Gaps = 10/311 (3%)

Query: 34  FSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 93
           F+EM + G  P  + +N L+T  +     + +  +   +F + K   +   ++ ++ I++
Sbjct: 117 FNEMVDKGFVPGSNCFNNLLTFVV----GSSSFNQWWRFFNESK--IKVDLDVYSFGIVI 170

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
           + C +A  +++   L  EL E   +P++  Y  ++D   K G I++ + +   M      
Sbjct: 171 KGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLV 230

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
            +  T+ +LI    K     +  ++++ +      P L T+N ++  + K      A  +
Sbjct: 231 ANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKL 290

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNV--SRAREIFDELSKLGKDMKVSTLNAMLEAY 271
           F +M     + + +TY  +I   G C  +  + A ++ D++   G +  + T N +++ +
Sbjct: 291 FDEMRERGVSCNIVTYNTLIG--GLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGF 348

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           C  G   +A  L  +  + G++P   TY +L   + K        K++K ME+ GI P+K
Sbjct: 349 CGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSK 408

Query: 332 RFFLEALETFS 342
             +   ++TF+
Sbjct: 409 ITYTILIDTFA 419


>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 154/365 (42%), Gaps = 46/365 (12%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH---TR 60
           ++ ++ D  + S LI  + ++G    A+  F +    G   +  ++NALI        TR
Sbjct: 443 RKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTR 502

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALF----------- 109
           D  K           + GM +  P++VTY +L++  A+   +D+  ALF           
Sbjct: 503 DGLKMYI--------LMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPD 554

Query: 110 ------------------------KELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
                                   K +  + + PDI  YN +++ + + G ++ +  +L 
Sbjct: 555 HIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLR 614

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
            +     +PDI+T+N +I  Y   + F K  ++F+ L   + +P   TF  +I  Y K  
Sbjct: 615 EIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDG 674

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
               A  +F  M      P+ +TY C+I  Y   +N   A E+++++        + + +
Sbjct: 675 RMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYS 734

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            +++  C  GL  EA L F+ +    + PD   Y +L + Y K         L   M  N
Sbjct: 735 ILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVN 794

Query: 326 GIVPN 330
           GI+P+
Sbjct: 795 GIMPD 799



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 134/299 (44%), Gaps = 13/299 (4%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I D   Y+ L+  + ++G+   A+ LF ++   G  PD  +Y  LI      RD A  L 
Sbjct: 517 IPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGL- 575

Query: 68  KALGYFQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
                 Q  K M+     P+I  YN+L+    +   V+ V  L +E+ +  L PDI TYN
Sbjct: 576 ------QIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYN 629

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++  Y    +  +   +   +K  + +P+ ITF +LID+Y K    D    +F S++  
Sbjct: 630 TMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLER 689

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
             +P + T++ +I  Y K      A  +++KM   + +P+ ++Y  +I   G C      
Sbjct: 690 GPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILID--GLCKKGLME 747

Query: 246 REIFDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
                    +G+ +   V     ++  YC  G   EA +L+++    G+ PD    K L
Sbjct: 748 EASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPDDLLQKAL 806



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/327 (20%), Positives = 144/327 (44%), Gaps = 5/327 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++  + D  IYS LI  + + G+      LFS     G + D  ++++++ A++   D  
Sbjct: 303 EKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLG 362

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           KA+     Y + +K  E   PN+VTY+IL+    +   V +   +F ++ +  L P + T
Sbjct: 363 KAIEV---YTRMLK--EGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLT 417

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ ++D + K+  +++   +   M      PD++  ++LI+   ++   D+  + F   +
Sbjct: 418 YSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAV 477

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                     FN++I    + +       ++  M   K  P  +TY  ++        + 
Sbjct: 478 KRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLD 537

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  +F +L K G          +++ +C    P     +F+   + G+ PD   Y +L 
Sbjct: 538 EALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLI 597

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
             + +    E V +LL+ + + G+ P+
Sbjct: 598 NMFFREGCVENVLELLREIIKYGLEPD 624



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/253 (20%), Positives = 111/253 (43%), Gaps = 4/253 (1%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P IV  N +L+       +   +  F  +  S  +P++ T++ +++ Y K   + E  S+
Sbjct: 238 PKIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSL 297

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
            + M      PD++ +++LI+   +    ++   +F   +    K  +  F+S++  Y +
Sbjct: 298 YNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVR 357

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKV 261
               GKA  V+ +M     +P+ +TY  +I   G C N  V  A  +F ++ K G +  V
Sbjct: 358 VGDLGKAIEVYTRMLKEGISPNVVTYSILIN--GLCRNGRVLEACGVFGQILKQGLEPSV 415

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T +++++ +C +    +   L+      G  PD     +L    ++  M +   +   +
Sbjct: 416 LTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQ 475

Query: 322 MEQNGIVPNKRFF 334
             + G+  N   F
Sbjct: 476 AVKRGLTLNNYLF 488



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 96/251 (38%), Gaps = 1/251 (0%)

Query: 80  ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
           E CK  +  Y  +  +  +   V++     + L E  L P I   N ++        I  
Sbjct: 200 EMCK-GLGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGV 258

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
                  M  +   P+++TF+ LI+ Y K    D+   ++  ++     P L  ++ +I 
Sbjct: 259 ASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILIN 318

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
              +A    +   +F    A       + +  I+  Y    ++ +A E++  + K G   
Sbjct: 319 GLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISP 378

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            V T + ++   C NG   EA  +F      G+ P   TY  L   + K+        L 
Sbjct: 379 NVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLY 438

Query: 320 KRMEQNGIVPN 330
             M + G VP+
Sbjct: 439 GIMLRKGHVPD 449


>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
 gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
          Length = 973

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 149/318 (46%), Gaps = 7/318 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L+   GK+      +WL  EM   G +P+   Y    T  +    +AK   +A    
Sbjct: 233 YSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSY----TICIRVLGQAKRFDEAYRIL 288

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM+  E CKP+++T+ +L++    A  +     +F ++ +S   PD  TY  ++D +G 
Sbjct: 289 AKMEN-EGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGD 347

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-RQAFDKMEQVFKSLMHSKEKPTLP 192
           NG  + +  + + MK++    +++ +  +ID+  +  + F+ +E +F  +      P   
Sbjct: 348 NGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALE-MFDEMKQKGIVPEQY 406

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           ++NS+I  + KA   G A  +F+ M      P+  T+   I  YG      +A + ++ +
Sbjct: 407 SYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELM 466

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G    V   NA+L     +G    A  +F     MGV+PD+ TY ++ K  +KA+  
Sbjct: 467 KSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKF 526

Query: 313 ELVQKLLKRMEQNGIVPN 330
           +   K+   M +N  VP+
Sbjct: 527 DEAVKIFYDMIENNCVPD 544



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 154/333 (46%), Gaps = 12/333 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           MQ+Q    A+ G ++ +   +G +G  R A      M+ +G   +   YN L+    +  
Sbjct: 151 MQRQ-IVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLV----YFL 205

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            K+    +AL  ++ M  ++   P++ TY++L+ A  + R+V+ V  L +E+    + P+
Sbjct: 206 VKSGFDREALEVYRVMM-VDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPN 264

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           +Y+Y   +   G+     E   +L++M++  CKPD+IT  +LI            + VF 
Sbjct: 265 VYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFW 324

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYG 237
            +  S +KP   T+ +++  +G     G ++ V +   AMK   Y  + + Y  +I    
Sbjct: 325 KMKKSDQKPDRVTYITLLDKFGD---NGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALC 381

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
               V  A E+FDE+ + G   +  + N+++  +       +A  LF++    G  P+  
Sbjct: 382 QVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGY 441

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           T+ L    Y K+       +  + M+  GIVP+
Sbjct: 442 THVLFINYYGKSGESIKAIQRYELMKSKGIVPD 474



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 131/296 (44%), Gaps = 7/296 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + + G+   A+ +F EM+  G  P+   YN+LI+  L    KA     AL  F
Sbjct: 373 YTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFL----KADRFGDALELF 428

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M  +   KPN  T+ + +    ++    +    ++ +    + PD+   N V+    K
Sbjct: 429 KHMD-IHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAK 487

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G +   + V   +K+    PD IT+ ++I    K   FD+  ++F  ++ +   P +  
Sbjct: 488 SGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLA 547

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            NS+I    KA    +A  +F ++  M   P+  TY  ++   G    V     + +E+ 
Sbjct: 548 VNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMY 607

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEA-DLLFENSHNMGVTPDSSTYKLLYKAYTK 308
                  + T N +L+  C NG   +A D+L+  +   G  PD S+Y  +     K
Sbjct: 608 HSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMT-TKGCIPDLSSYNTVIYGLVK 662



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 135/333 (40%), Gaps = 29/333 (8%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA-- 67
           D   ++ LI V+   G+   A  +F +M+ S  +PD   Y  L+       D    +   
Sbjct: 299 DVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIW 358

Query: 68  ---KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
              KA GY            N+V Y  ++ A  Q   V +   +F E+ +  + P+ Y+Y
Sbjct: 359 NAMKADGY----------NDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSY 408

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++  + K     +   +   M  +  KP+  T  L I+ YGK     K  Q ++ +  
Sbjct: 409 NSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKS 468

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P +   N+++    K+   G A+ VF ++ AM  +P  ITY  +I     C   S+
Sbjct: 469 KGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKC---CSKASK 525

Query: 245 AREIFDELSKLGKDM-------KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
               FDE  K+  DM        V  +N++++     G   EA  +F     M + P   
Sbjct: 526 ----FDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDG 581

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           TY  L     +    + V  LL+ M  +   PN
Sbjct: 582 TYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPN 614



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 116/261 (44%), Gaps = 10/261 (3%)

Query: 22  GKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER 81
           GK G++  A+  +  M++ G  PD    NA+    L    K+  L  A   F ++K M  
Sbjct: 451 GKSGESIKAIQRYELMKSKGIVPDVVAGNAV----LFGLAKSGRLGMAKRVFHELKAMG- 505

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
             P+ +TY ++++ C++A   D+   +F ++ E+   PD+   N ++D   K G   E  
Sbjct: 506 VSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAW 565

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
            +  ++K    +P   T+N L+   G+     ++  + + + HS   P L T+N+++   
Sbjct: 566 RIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCL 625

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM-- 259
            K      A  +   MT     P   +Y  +I  YG      R  E F    ++ K +  
Sbjct: 626 CKNGAVNDALDMLYSMTTKGCIPDLSSYNTVI--YGLVKE-ERYNEAFSIFCQMKKVLIP 682

Query: 260 KVSTLNAMLEAYCMNGLPTEA 280
             +TL  +L ++   GL  EA
Sbjct: 683 DYATLCTILPSFVKIGLMKEA 703



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/380 (20%), Positives = 149/380 (39%), Gaps = 40/380 (10%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           + K +  + D    + ++  + K G+  +A  +F E++  G  PD   Y  +I       
Sbjct: 465 LMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCC---- 520

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            KA    +A+  F  M     C P+++  N L+    +A   D+   +F +L E  L P 
Sbjct: 521 SKASKFDEAVKIFYDMI-ENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPT 579

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TYN ++   G+ G +KE+  +L  M  +   P++IT+N ++D   K  A +    +  
Sbjct: 580 DGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLY 639

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM---------TAMKYTPSFITY-- 229
           S+      P L ++N++I    K     +A  +F +M         T     PSF+    
Sbjct: 640 SMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGL 699

Query: 230 ----------------------ECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLN 265
                                  C   M G      + ++ E  + ++  G  +    L 
Sbjct: 700 MKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLC 759

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            +++  C      EA  L +   + GV+  +  Y  L       N+ ++ + L   M++ 
Sbjct: 760 PLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKEL 819

Query: 326 GIVPNKRFFLEALETFSSSL 345
           G  P++  +   L+    S+
Sbjct: 820 GCGPDEFTYNLLLDAMGKSM 839



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 93/190 (48%), Gaps = 9/190 (4%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           TG+Y+ LI  +  +    +A  LF+EM+  GC PD   YN L+ A      K+  + + L
Sbjct: 790 TGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDA----MGKSMRIEEML 845

Query: 71  GYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
              ++M  KG E      VTYN ++    ++R ++Q   L+  L     +P   TY  ++
Sbjct: 846 KVQEEMHRKGYES---TYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLL 902

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D   K G I++ E++ + M    CK +   +N+L++ +      +K+  +F+ ++     
Sbjct: 903 DGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGIN 962

Query: 189 PTLPTFNSMI 198
           P + ++  +I
Sbjct: 963 PDIKSYTIII 972



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 86/179 (48%)

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++       +I   E + + MK   C PD  T+NLL+D+ GK    ++M +V + + 
Sbjct: 793 YNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMH 852

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
               + T  T+N++I    K+R   +A  ++  + +  ++P+  TY  ++        + 
Sbjct: 853 RKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIE 912

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            A  +F+E+ + G     +  N +L  + + G   +   LF++  + G+ PD  +Y ++
Sbjct: 913 DAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTII 971



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 78/181 (43%)

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN L+        +D    LF E+ E    PD +TYN ++DA GK+  I+EM  V   M 
Sbjct: 793 YNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMH 852

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
               +   +T+N +I    K +  ++   ++ +LM     PT  T+  ++    KA    
Sbjct: 853 RKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIE 912

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            AE +F +M       +   Y  ++  +    N  +   +F ++   G +  + +   ++
Sbjct: 913 DAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIII 972

Query: 269 E 269
           +
Sbjct: 973 D 973



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 97/232 (41%), Gaps = 11/232 (4%)

Query: 8   IADTGI------YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           IA +GI         LI  + K+ +   A  L  + ++ G      +YN+LI   +    
Sbjct: 746 IASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLV---- 801

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
               +  A G F +MK +  C P+  TYN+LL A  ++  ++++  + +E+H        
Sbjct: 802 DENLIDIAEGLFAEMKELG-CGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTY 860

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TYN ++    K+  +++   +   + S    P   T+  L+D   K    +  E +F  
Sbjct: 861 VTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNE 920

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           ++    K     +N ++  +  A    K  ++FQ M      P   +Y  II
Sbjct: 921 MLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIII 972



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 7/117 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I+ + K  +   A+ L+  + + G  P P  Y  L+   L    KA  +  A   F
Sbjct: 863 YNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLL----KAGRIEDAENLF 918

Query: 74  QKMKGME-RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            +M  +E  CK N   YNILL     A N ++V  LF+++ +  + PDI +Y  ++D
Sbjct: 919 NEM--LEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIID 973



 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 1/129 (0%)

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
           G  R+   AE VF  M       +  T+  I    G    +  A      + + G  +  
Sbjct: 137 GHGRVGDMAE-VFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNA 195

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T N ++     +G   EA  ++      GV P   TY +L  A+ K    E V  LL+ 
Sbjct: 196 YTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLRE 255

Query: 322 MEQNGIVPN 330
           ME +G+ PN
Sbjct: 256 MEAHGVKPN 264


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 157/334 (47%), Gaps = 12/334 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSG-CRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           Y  +I+   K G+   A+ +F EM   G  +P+  +YNALI  +    D+ K L  AL Y
Sbjct: 224 YGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYC---DQGK-LDTALLY 279

Query: 73  FQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             +M  +ER     + TYN+L+ A        +   L +E+    LA D++TYN +++ +
Sbjct: 280 RDRM--VERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGH 337

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G +K+   +   M     +  ++T+  LI +  K+    + +++F   +    +P L
Sbjct: 338 CKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDL 397

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIF 249
             +N++I ++  +    +A  +  +M   +  P  +TY  +  M G C    V  AR++ 
Sbjct: 398 VLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTL--MRGLCLLGRVDEARKLI 455

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE++K G    + T N ++  Y M G   +A  +     N G  P   TY  L +   K 
Sbjct: 456 DEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKN 515

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
              +  + ++K M +NGI P+   ++  +E  ++
Sbjct: 516 GQGDDAENMVKEMVENGITPDDSTYISLIEGLTT 549



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 119/296 (40%), Gaps = 13/296 (4%)

Query: 54  TAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH 113
           TA LH    A   A A   F  M  + R      T+NI+LR    A    +   L +++ 
Sbjct: 123 TASLHPLLSALPSAPAFALFADMFRL-RLPLCTTTFNIMLRHLCSAGKPARALELLRQMP 181

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLLIDSYGKRQAF 172
                P+  TYN V+  +   G ++    ++  M+      P+  T+  +I  + K    
Sbjct: 182 R----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRV 237

Query: 173 DKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKAEYVF---QKMTAMKYTPSFIT 228
           D+  +VF  ++   E KP    +N++I  Y     QGK +       +M       +  T
Sbjct: 238 DEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD---QGKLDTALLYRDRMVERGVAMTVAT 294

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
           Y  ++         + A E+ +E+   G  + V T N ++  +C  G   +A  +FEN  
Sbjct: 295 YNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMS 354

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             GV     TY  L  A +K    +   KL     + GI P+   +   + + S+S
Sbjct: 355 RRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 410



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 9/163 (5%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLHTRD 61
           +R    D  +Y+ LI      G    A  +  EM      PD   YN L+     L   D
Sbjct: 390 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 449

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           +A+ L   +      +G++   P++VTYN L+   +   +V     +  E+      P +
Sbjct: 450 EARKLIDEM----TKRGIQ---PDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTL 502

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164
            TYN ++    KNG   + E+++  M  N   PD  T+  LI+
Sbjct: 503 LTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIE 545



 Score = 42.7 bits (99), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 10/126 (7%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+K+R    D   Y+ L+  +   G+   A  L  EM   G +PD   YN LI+ +    
Sbjct: 423 MEKKRIAPDDV-TYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKG 481

Query: 61  DKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
           D    +  AL    +M  KG     P ++TYN L++   +    D    + KE+ E+ + 
Sbjct: 482 D----VKDALRIRNEMMNKGF---NPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGIT 534

Query: 119 PDIYTY 124
           PD  TY
Sbjct: 535 PDDSTY 540


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 146/316 (46%), Gaps = 10/316 (3%)

Query: 11  TGI-YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           +GI Y  LI  + K G+TR A+ L   +     RP+  +Y+ +I        K   + +A
Sbjct: 162 SGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLC----KDTLVDEA 217

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              + +M G +   P++VTY+IL+        +++   L  E+    + PDIYTY  ++D
Sbjct: 218 YDLYTEMVG-KGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVD 276

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A  K G +KE E+VL+ M       D++ ++ L+D Y      +  ++VF ++      P
Sbjct: 277 ALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTP 336

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  ++ MI    K +   +A  +F+++      P  +TY  +I        +S   ++F
Sbjct: 337 DVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLF 396

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE+   G+   V T N +++A C NG    A  LF    +  + P+  T+ +L     K 
Sbjct: 397 DEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKV 456

Query: 310 ----NMKELVQKLLKR 321
               N  E  Q LL +
Sbjct: 457 GRLKNALEFFQDLLTK 472



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 151/363 (41%), Gaps = 45/363 (12%)

Query: 4   QRWYI-ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +RW I  +  IYS +I  + K      A  L++EM   G  PD   Y+ L++        
Sbjct: 190 ERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFC----I 245

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQAR----------------NVDQV 105
              L +A+    +M  +E   P+I TY IL+ A C + +                N+D V
Sbjct: 246 VGQLNRAIDLLNEMV-LENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVV 304

Query: 106 ----------------NA--LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
                           NA  +F  + +  + PD++ Y+ +++   K   + E  ++   +
Sbjct: 305 VYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEI 364

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
                 PD +T+  LID   K      +  +F  ++   + P + T+N++I    K    
Sbjct: 365 HQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHL 424

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLN 265
            +A  +F KM      P+  T+   I + G C    +  A E F +L   G  + V T  
Sbjct: 425 DRAIALFNKMKDQAIRPNVYTFT--ILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYT 482

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            M+   C  GL  EA  L     + G   D+ T++++ +A+   +  +  +KL++ M   
Sbjct: 483 VMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIAR 542

Query: 326 GIV 328
           G++
Sbjct: 543 GLL 545



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 111/257 (43%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +PN+V Y++++    +   VD+   L+ E+    ++PD+ TY+ ++  +   G +     
Sbjct: 195 RPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAID 254

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +L+ M      PDI T+ +L+D+  K     + E V   ++ +     +  +++++  Y 
Sbjct: 255 LLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYC 314

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
                  A+ VF  MT M  TP    Y  +I        V  A  +F+E+ +        
Sbjct: 315 LVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTV 374

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T  ++++  C +G  +    LF+   + G  PD  TY  L  A  K    +    L  +M
Sbjct: 375 TYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKM 434

Query: 323 EQNGIVPNKRFFLEALE 339
           +   I PN   F   L+
Sbjct: 435 KDQAIRPNVYTFTILLD 451



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/306 (20%), Positives = 124/306 (40%), Gaps = 5/306 (1%)

Query: 25  GQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP 84
           GQ  LA    S++   G +P+    N L+   L    K K   +AL +  K+   +  + 
Sbjct: 107 GQVVLAFSGVSKILKLGYQPNTITLNTLMKG-LCLEGKVK---EALRFHDKVLA-QGFRL 161

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           + ++Y IL+    +         L + +    + P++  Y+ ++D   K+ ++ E   + 
Sbjct: 162 SGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLY 221

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
           + M      PD++T+++L+  +      ++   +   ++     P + T+  ++    K 
Sbjct: 222 TEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKE 281

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
               +AE V   M         + Y  ++  Y   + V+ A+ +F  ++++G    V   
Sbjct: 282 GKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCY 341

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           + M+   C      EA  LFE  H   + PD+ TY  L     K+     V  L   M  
Sbjct: 342 SIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLD 401

Query: 325 NGIVPN 330
            G  P+
Sbjct: 402 RGQPPD 407



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/324 (19%), Positives = 126/324 (38%), Gaps = 23/324 (7%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA-----LGYFQKMKGMERCKP 84
           A+ L+ +M  S   PD    N +I    H      A +       LGY          +P
Sbjct: 77  AISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSGVSKILKLGY----------QP 126

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDI----YTYNGVMDAYGKNGMIKEM 140
           N +T N L++       V +  AL    H+ +LA        +Y  +++   K G  +  
Sbjct: 127 NTITLNTLMKGLCLEGKVKE--AL--RFHDKVLAQGFRLSGISYGILINGVCKIGETRAA 182

Query: 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
             +L R++    +P+++ ++++ID   K    D+   ++  ++     P + T++ ++  
Sbjct: 183 IRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSG 242

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
           +       +A  +  +M      P   TY  ++        V  A  +   + K   ++ 
Sbjct: 243 FCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLD 302

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           V   + +++ YC+      A  +F     MGVTPD   Y ++     K    +    L +
Sbjct: 303 VVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFE 362

Query: 321 RMEQNGIVPNKRFFLEALETFSSS 344
            + Q  +VP+   +   ++    S
Sbjct: 363 EIHQKNMVPDTVTYTSLIDCLCKS 386



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 1/162 (0%)

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
             A D + Q F  + H    P    FN ++I+    +    A  ++++M   +  P + T
Sbjct: 37  HNADDAVSQ-FNHMFHVHPTPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFT 95

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
              II  + +   V  A     ++ KLG      TLN +++  C+ G   EA    +   
Sbjct: 96  LNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVL 155

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             G      +Y +L     K        +LL+R+E+  I PN
Sbjct: 156 AQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPN 197



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/282 (17%), Positives = 108/282 (38%), Gaps = 35/282 (12%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+   +N +L +    +      +L+K++  S + PD +T N +++ +   G +    S 
Sbjct: 56  PHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSG 115

Query: 144 LSRMKSNQCKPDIITFN-----------------------------------LLIDSYGK 168
           +S++     +P+ IT N                                   +LI+   K
Sbjct: 116 VSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCK 175

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
                   ++ + +     +P +  ++ +I    K  L  +A  ++ +M     +P  +T
Sbjct: 176 IGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVT 235

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
           Y  +++ +     ++RA ++ +E+     +  + T   +++A C  G   EA+ +     
Sbjct: 236 YSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMV 295

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              V  D   Y  L   Y   N     +++   M Q G+ P+
Sbjct: 296 KACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPD 337


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 143/311 (45%), Gaps = 22/311 (7%)

Query: 42  CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQA 99
           C  D   Y +LI        K K L +AL +  KM  KG     P++ TY  ++ A    
Sbjct: 7   CSADFVTYTSLIQGLC----KVKRLEQALIFLGKMVSKGFH---PDVYTYTAVIHALCVE 59

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
             + +     +E+    L P++ TY  ++D   K G + E  ++LS+M+  +C P  +T+
Sbjct: 60  NRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMR-KKCVPTAVTY 118

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
           N LI    K +   +   + + +++S   P + T+ ++I  + K++    A  VF+++ A
Sbjct: 119 NSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVA 178

Query: 220 MKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDM-KVSTLNAMLEAYCMNGL 276
             + P  +TY C+I   G C    +  A ++F  + K G  M    T N+++  +C  G 
Sbjct: 179 RGFRPDVVTYSCLID--GLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGK 236

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
             EA  L E     G +PD  TY  L   + K    +    LL +M + G+ P+      
Sbjct: 237 MDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPD------ 290

Query: 337 ALETFSSSLAG 347
            + TF+S + G
Sbjct: 291 -VVTFTSLMDG 300



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 146/330 (44%), Gaps = 25/330 (7%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG-CRPDPSVYNALITAHLHTRDKA 63
           R +  D   YS LI  + K+G+ + A+ LF  M  SG C P+   YN+LI+       + 
Sbjct: 179 RGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC----RM 234

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             + +A+   ++M       P++VTY  L+    +   +D    L  ++    L PD+ T
Sbjct: 235 GKMDEAMNLLERMAETGS-SPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVT 293

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           +  +MD   +   + +   +L  M+   C P + T+N ++D Y +    +++E+  K ++
Sbjct: 294 FTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRA---NQLEEARKFML 350

Query: 184 HSKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--- 239
              +  P + +FN MI    K     +A  + ++    +  P  + Y  +I   G C   
Sbjct: 351 EEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVID--GLCREK 408

Query: 240 --DNVSRA-REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
             D   R  R++ +E   L   +  STL   +   C  G+   A    E     G  P+ 
Sbjct: 409 KVDEACRVYRKMLEEPGCLPNSITYSTL---ITGLCNAGMLDRARGYIEK----GCVPNI 461

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNG 326
            TY LL  A+ KAN  E  ++LL  M Q G
Sbjct: 462 GTYNLLIDAFRKANRDEDARELLDDMVQRG 491



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 143/329 (43%), Gaps = 13/329 (3%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           + +  D   Y+ +I  +  + +   A     EM N    P+   Y  LI        K  
Sbjct: 40  KGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLC----KGG 95

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            + +A+    KM+  ++C P  VTYN L+    +A    +   L +E+  S   PDI+TY
Sbjct: 96  RVDEAVALLSKMR--KKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTY 153

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
             ++  + K+    +   V  ++ +   +PD++T++ LID   K     +   +F  ++ 
Sbjct: 154 TTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIK 213

Query: 185 SKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--N 241
           S    P   T+NS+I  + +     +A  + ++M     +P  +TY  +  M G+C    
Sbjct: 214 SGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTL--MNGFCKLAR 271

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +  A ++ +++++ G    V T  ++++  C     ++A  +         +P   TY  
Sbjct: 272 LDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNT 331

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +   Y +AN  E  +K +  +E+    PN
Sbjct: 332 ILDGYCRANQLEEARKFM--LEEMDCPPN 358



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 135/322 (41%), Gaps = 7/322 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD   Y+ LI  + K  +   A+    +M + G  PD   Y A+I    H       L +
Sbjct: 9   ADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVI----HALCVENRLHE 64

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A  + ++M       PN+VTY +L+    +   VD+  AL  ++ +  + P   TYN ++
Sbjct: 65  ARKFLEEMAN-RNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLI 122

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
               K     E   +L  M  + C PDI T+  LI  + K +  D   +VF+ L+    +
Sbjct: 123 SGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFR 182

Query: 189 PTLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           P + T++ +I    K  RL+   +   + + +    P+ +TY  +I+ +     +  A  
Sbjct: 183 PDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMN 242

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + + +++ G    V T   ++  +C      +A  L       G+TPD  T+  L     
Sbjct: 243 LLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLC 302

Query: 308 KANMKELVQKLLKRMEQNGIVP 329
           + N       +L  M +    P
Sbjct: 303 RENRLSDAVHILGEMRRKSCSP 324


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 143/311 (45%), Gaps = 22/311 (7%)

Query: 42  CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQA 99
           C  D   Y +LI        K K L +AL +  KM  KG     P++ TY  ++ A    
Sbjct: 7   CSADFVTYTSLIQGLC----KVKRLEQALIFLGKMVSKGFH---PDVYTYTAVIHALCVE 59

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
             + +     +E+    L P++ TY  ++D   K G + E  ++LS+M+  +C P  +T+
Sbjct: 60  NRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMR-KKCVPTAVTY 118

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
           N LI    K +   +   + + +++S   P + T+ ++I  + K++    A  VF+++ A
Sbjct: 119 NSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVA 178

Query: 220 MKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDM-KVSTLNAMLEAYCMNGL 276
             + P  +TY C+I   G C    +  A ++F  + K G  M    T N+++  +C  G 
Sbjct: 179 RGFRPDVVTYSCLID--GLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGK 236

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
             EA  L E     G +PD  TY  L   + K    +    LL +M + G+ P+      
Sbjct: 237 MDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPD------ 290

Query: 337 ALETFSSSLAG 347
            + TF+S + G
Sbjct: 291 -VVTFTSLMDG 300



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 146/330 (44%), Gaps = 25/330 (7%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG-CRPDPSVYNALITAHLHTRDKA 63
           R +  D   YS LI  + K+G+ + A+ LF  M  SG C P+   YN+LI+       + 
Sbjct: 179 RGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC----RM 234

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             + +A+   ++M       P++VTY  L+    +   +D    L  ++    L PD+ T
Sbjct: 235 GKMDEAMNLLERMAETGS-SPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVT 293

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           +  +MD   +   + +   +L  M+   C P + T+N ++D Y +    +++E+  K ++
Sbjct: 294 FTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRA---NQLEEARKFML 350

Query: 184 HSKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--- 239
              +  P + +FN MI    K     +A  + ++    +  P  + Y  +I   G C   
Sbjct: 351 EEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVID--GLCREK 408

Query: 240 --DNVSRA-REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
             D   R  R++ +E   L   +  STL   +   C  G+   A    E     G  P+ 
Sbjct: 409 KVDEACRVYRKMLEEPGCLPNSITYSTL---VTGLCNAGMLDRARGYIEK----GCVPNI 461

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNG 326
            TY LL  A+ KAN  E  ++LL  M Q G
Sbjct: 462 GTYNLLIDAFRKANRDEDARELLDDMVQRG 491



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 143/329 (43%), Gaps = 13/329 (3%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           + +  D   Y+ +I  +  + +   A     EM N    P+   Y  LI        K  
Sbjct: 40  KGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLC----KGG 95

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            + +A+    KM+  ++C P  VTYN L+    +A    +   L +E+  S   PDI+TY
Sbjct: 96  RVDEAVALLSKMR--KKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTY 153

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
             ++  + K+    +   V  ++ +   +PD++T++ LID   K     +   +F  ++ 
Sbjct: 154 TTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIK 213

Query: 185 SKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--N 241
           S    P   T+NS+I  + +     +A  + ++M     +P  +TY  +  M G+C    
Sbjct: 214 SGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTL--MNGFCKLAR 271

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +  A ++ +++++ G    V T  ++++  C     ++A  +         +P   TY  
Sbjct: 272 LDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNT 331

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +   Y +AN  E  +K +  +E+    PN
Sbjct: 332 ILDGYCRANQLEEARKFM--LEEMDCPPN 358



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 135/322 (41%), Gaps = 7/322 (2%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD   Y+ LI  + K  +   A+    +M + G  PD   Y A+I    H       L +
Sbjct: 9   ADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVI----HALCVENRLHE 64

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A  + ++M       PN+VTY +L+    +   VD+  AL  ++ +  + P   TYN ++
Sbjct: 65  ARKFLEEMAN-RNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLI 122

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
               K     E   +L  M  + C PDI T+  LI  + K +  D   +VF+ L+    +
Sbjct: 123 SGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFR 182

Query: 189 PTLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           P + T++ +I    K  RL+   +   + + +    P+ +TY  +I+ +     +  A  
Sbjct: 183 PDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMN 242

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + + +++ G    V T   ++  +C      +A  L       G+TPD  T+  L     
Sbjct: 243 LLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLC 302

Query: 308 KANMKELVQKLLKRMEQNGIVP 329
           + N       +L  M +    P
Sbjct: 303 RENRLSDAVHILGEMRRKSCSP 324


>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g31840-like [Vitis vinifera]
          Length = 1131

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 154/365 (42%), Gaps = 46/365 (12%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH---TR 60
           ++ ++ D  + S LI  + ++G    A+  F +    G   +  ++NALI        TR
Sbjct: 443 RKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTR 502

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALF----------- 109
           D  K           + GM +  P++VTY +L++  A+   +D+  ALF           
Sbjct: 503 DGLKMYI--------LMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPD 554

Query: 110 ------------------------KELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
                                   K +  + + PDI  YN +++ + + G ++ +  +L 
Sbjct: 555 HIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLR 614

Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
            +     +PDI+T+N +I  Y   + F K  ++F+ L   + +P   TF  +I  Y K  
Sbjct: 615 EIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDG 674

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
               A  +F  M      P+ +TY C+I  Y   +N   A E+++++        + + +
Sbjct: 675 RMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYS 734

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            +++  C  GL  EA L F+ +    + PD   Y +L + Y K         L   M  N
Sbjct: 735 ILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVN 794

Query: 326 GIVPN 330
           GI+P+
Sbjct: 795 GIMPD 799



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 134/297 (45%), Gaps = 9/297 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I D   Y+ L+  + ++G+   A+ LF ++   G  PD  +Y  LI      RD A  L 
Sbjct: 517 IPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQ 576

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
                F+ M+      P+I  YN+L+    +   V+ V  L +E+ +  L PDI TYN +
Sbjct: 577 ----IFKLMQS-NGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTM 631

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  Y    +  +   +   +K  + +P+ ITF +LID+Y K    D    +F S++    
Sbjct: 632 ICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGP 691

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P + T++ +I  Y K      A  +++KM   + +P+ ++Y  +I   G C        
Sbjct: 692 EPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILID--GLCKKGLMEEA 749

Query: 248 IFDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
                  +G+ +   V     ++  YC  G   EA +L+++    G+ PD    K L
Sbjct: 750 SLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPDDLLQKAL 806



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/327 (20%), Positives = 144/327 (44%), Gaps = 5/327 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++  + D  IYS LI  + + G+      LFS     G + D  ++++++ A++   D  
Sbjct: 303 EKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLG 362

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           KA+     Y + +K  E   PN+VTY+IL+    +   V +   +F ++ +  L P + T
Sbjct: 363 KAIEV---YTRMLK--EGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLT 417

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ ++D + K+  +++   +   M      PD++  ++LI+   ++   D+  + F   +
Sbjct: 418 YSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAV 477

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                     FN++I    + +       ++  M   K  P  +TY  ++        + 
Sbjct: 478 KRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLD 537

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  +F +L K G          +++ +C    P     +F+   + G+ PD   Y +L 
Sbjct: 538 EALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLI 597

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
             + +    E V +LL+ + + G+ P+
Sbjct: 598 NMFFREGCVENVLELLREIIKYGLEPD 624



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/253 (20%), Positives = 111/253 (43%), Gaps = 4/253 (1%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P IV  N +L+       +   +  F  +  S  +P++ T++ +++ Y K   + E  S+
Sbjct: 238 PKIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSL 297

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
            + M      PD++ +++LI+   +    ++   +F   +    K  +  F+S++  Y +
Sbjct: 298 YNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVR 357

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKV 261
               GKA  V+ +M     +P+ +TY  +I   G C N  V  A  +F ++ K G +  V
Sbjct: 358 VGDLGKAIEVYTRMLKEGISPNVVTYSILIN--GLCRNGRVLEACGVFGQILKQGLEPSV 415

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T +++++ +C +    +   L+      G  PD     +L    ++  M +   +   +
Sbjct: 416 LTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQ 475

Query: 322 MEQNGIVPNKRFF 334
             + G+  N   F
Sbjct: 476 AVKRGLTLNNYLF 488



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 96/251 (38%), Gaps = 1/251 (0%)

Query: 80  ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
           E CK  +  Y  +  +  +   V++     + L E  L P I   N ++        I  
Sbjct: 200 EMCK-GLGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGV 258

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
                  M  +   P+++TF+ LI+ Y K    D+   ++  ++     P L  ++ +I 
Sbjct: 259 ASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILIN 318

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
              +A    +   +F    A       + +  I+  Y    ++ +A E++  + K G   
Sbjct: 319 GLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISP 378

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            V T + ++   C NG   EA  +F      G+ P   TY  L   + K+        L 
Sbjct: 379 NVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLY 438

Query: 320 KRMEQNGIVPN 330
             M + G VP+
Sbjct: 439 GIMLRKGHVPD 449


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 146/352 (41%), Gaps = 40/352 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI ++ KKG+ R A  + S++      PD   Y +LI  H   R+    L  A G F
Sbjct: 201 FNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRN----LDLAFGVF 256

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   E C PN VTY+ L+        VD+   + +E+ E  + P +YTY   + A   
Sbjct: 257 DRMVK-EGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCA 315

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
               +E   +++RMK   C+P++ T+  LI    +    +    ++  ++     P   T
Sbjct: 316 IEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVT 375

Query: 194 FNSMIINY-----------------GKARLQG------------------KAEYVFQKMT 218
           +N++I                    G   L                    KA  +F+KM 
Sbjct: 376 YNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKML 435

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
            M   P+ +TY  +I  Y    NV+ A  + D + + G +    T N ++  +   G   
Sbjct: 436 KMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLE 495

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            A   F+     G+ P+  +Y  L   ++K    ++   LLKRME+ G  PN
Sbjct: 496 SASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPN 547



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 142/323 (43%), Gaps = 13/323 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y++L++   K G+   A + F EM   G  P+P  Y ALI  H     K   +  A
Sbjct: 477 DEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGH----SKDGKVDIA 532

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L   ++M+ M  C PN+ +YN ++   ++     +   +  ++ E  L P++ TY  ++D
Sbjct: 533 LSLLKRMEEM-GCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLID 591

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              +NG  +    +   M+  +C P++ T++ LI    +    D+ E+    +     +P
Sbjct: 592 GLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAER----MSEIGCEP 647

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRARE 247
           TL T+++++    +     +AE + + M    + P    Y  ++    +C N  V  A +
Sbjct: 648 TLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLI--AHCKNLEVDHALK 705

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           IF  +   G  + +S   A++ A C  G   EA  LF+N        D   + +L     
Sbjct: 706 IFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLL 765

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           K    +L  KLL  ME     PN
Sbjct: 766 KEGELDLCMKLLHIMESKNFTPN 788



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 154/373 (41%), Gaps = 48/373 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+R    +   Y+ LI+ + + G+  +A+ L+ +M   G  P+   YNALI         
Sbjct: 330 KKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELC----V 385

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
               + AL  F  M+G      N  TYN +++      ++++   LF+++ +    P + 
Sbjct: 386 GGRFSTALKIFHWMEG-HGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVV 444

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN +++ Y   G +     +L  MK N C+PD  T+N L+  + K    +     F+ +
Sbjct: 445 TYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEM 504

Query: 183 M-----------------HSKE------------------KPTLPTFNSMIINYGKARLQ 207
           +                 HSK+                   P + ++N++I    K    
Sbjct: 505 VECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRF 564

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLN 265
            +AE +  KM      P+ ITY  +I   G C N     A +IF ++ K      + T +
Sbjct: 565 SEAEKICDKMVEQGLLPNVITYTTLID--GLCRNGRTQFAFKIFHDMEKRKCLPNLYTYS 622

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
           +++   C  G   EA+ + E    +G  P   TY  L     +       ++L+K M++ 
Sbjct: 623 SLIYGLCQEGKADEAERMSE----IGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKER 678

Query: 326 GIVPNKRFFLEAL 338
           G  P++  +   L
Sbjct: 679 GFCPDREIYYSLL 691



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 125/297 (42%), Gaps = 39/297 (13%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P+++T+N L+   ++   V +   +  ++ +  L+PD++TY  ++  + +N  +     
Sbjct: 195 QPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFG 254

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI---- 198
           V  RM    C P+ +T++ LI+        D+   + + ++    +PT+ T+   I    
Sbjct: 255 VFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALC 314

Query: 199 -----------------------------INYGKARLQGKAEY---VFQKMTAMKYTPSF 226
                                        +  G +RL GK E    ++ KM      P+ 
Sbjct: 315 AIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRL-GKLEVAIGLYHKMLKEGLVPNT 373

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           +TY  +I         S A +IF  +   G      T N +++  C+ G   +A +LFE 
Sbjct: 374 VTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEK 433

Query: 287 SHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
              MG  P   TY  L   Y TK N+     +LL  M++NG  P++  + E +  FS
Sbjct: 434 MLKMGPLPTVVTYNTLINGYLTKGNVNN-AARLLDLMKENGCEPDEWTYNELVSGFS 489



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 106/242 (43%), Gaps = 4/242 (1%)

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
           ++++AC     + +V     E+        +Y+ N ++    K  M++   ++  +M ++
Sbjct: 133 LMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNS 192

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
             +P ++TFN LI+   K+    + E +   +      P + T+ S+I+ + + R    A
Sbjct: 193 GIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLA 252

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAML 268
             VF +M      P+ +TY  +I   G C+   V  A ++ +E+ + G +  V T    +
Sbjct: 253 FGVFDRMVKEGCDPNSVTYSTLIN--GLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPI 310

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
            A C      EA  L       G  P+  TY  L    ++    E+   L  +M + G+V
Sbjct: 311 TALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLV 370

Query: 329 PN 330
           PN
Sbjct: 371 PN 372



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 105/250 (42%)

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           N LL   A+   V+    L+K++  S + P + T+N +++   K G ++E E +LS++  
Sbjct: 167 NTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQ 226

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
               PD+ T+  LI  + + +  D    VF  ++     P   T++++I          +
Sbjct: 227 YDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDE 286

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  + ++M      P+  TY   IT     ++   A E+   + K G    V T  A++ 
Sbjct: 287 ALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALIS 346

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
                G    A  L+      G+ P++ TY  L              K+   ME +G + 
Sbjct: 347 GLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLA 406

Query: 330 NKRFFLEALE 339
           N + + E ++
Sbjct: 407 NTQTYNEIIK 416



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 11/190 (5%)

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
           N L+    K +  +    ++K +++S  +P+L TFN++I    K     +AE +  ++  
Sbjct: 167 NTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQ 226

Query: 220 MKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
              +P   TY  +I   G+C   N+  A  +FD + K G D    T + ++   C  G  
Sbjct: 227 YDLSPDVFTYTSLI--LGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRV 284

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEA 337
            EA  + E     G+ P   TY L   A      +E   +L+ RM++ G  PN       
Sbjct: 285 DEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPN------- 337

Query: 338 LETFSSSLAG 347
           ++T+++ ++G
Sbjct: 338 VQTYTALISG 347



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 9/151 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L++ + +KG+   A  L  +M+  G  PD  +Y +L+ AH     K   +  AL  F
Sbjct: 652 YSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHC----KNLEVDHALKIF 707

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             +  KG +    ++  Y  L+ A  +A  V++  ALF  + E     D   +  ++D  
Sbjct: 708 HSIEAKGFQL---HLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGL 764

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
            K G +     +L  M+S    P+I T+ +L
Sbjct: 765 LKEGELDLCMKLLHIMESKNFTPNIQTYVIL 795


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 148/330 (44%), Gaps = 11/330 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAM-WLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
            R   A+   YS L+  + K  +   A+  L  E+   G  PD   Y+ +I        K
Sbjct: 212 HRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLC----K 267

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A  L  A+  F++M     C P  +TYN L+    +A ++D+   L  ++ +   APD+ 
Sbjct: 268 AGRLRDAVDIFEEMS----CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVI 323

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  +M A+ K G + +   +  +M +N+  PD++TF  L+D        +   ++ + +
Sbjct: 324 TYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEI 383

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 PT+ T+N ++  Y K+    KAE +     +  + P+ +TY  ++         
Sbjct: 384 TRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRT 443

Query: 243 SRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            +A +  D+L+  G      V+    +L+A C +G   +A   +E     G  P ++T+ 
Sbjct: 444 DQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFA 503

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +  A  KA+  +   +LL+ M + G  P 
Sbjct: 504 TVVFALCKAHQPQQAHELLEEMIKYGHTPG 533



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 142/318 (44%), Gaps = 12/318 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R +  D   YS +I  + K G+ R A+ +F EM    C P    YN+LI  +    D  
Sbjct: 248 RRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMD 304

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           +A+ + LG   KM   + C P+++TY  L+ A  +   +D    LF+++  + L+PD+ T
Sbjct: 305 EAI-RLLG---KMVD-DNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVT 359

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           +  ++D     G +++   +L  +    C P I T+N ++D Y K     K E++     
Sbjct: 360 FTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFR 419

Query: 184 HSKEKPTLPTFNSMIINYGKA-RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN- 241
                P   T+N ++    +A R     +Y+ Q  +     P+ +    II +   C + 
Sbjct: 420 SRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAII-LDALCRDG 478

Query: 242 -VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
               A + ++E+ + G     +T   ++ A C    P +A  L E     G TP   T  
Sbjct: 479 RTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCD 538

Query: 301 LLYKAYTKANMKELVQKL 318
            +  AY +A M +   +L
Sbjct: 539 AVVSAYCRAGMIQKADEL 556



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 145/331 (43%), Gaps = 14/331 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K R     T +++ +I  + + G+ R A+ ++ +M N    PD   Y  L+    H   K
Sbjct: 107 KSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQM-NDAHPPDFLTYTKLV----HGLSK 161

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A  L  A+   Q+M    R  P+  T  +++++      VD    L +E+    +A +  
Sbjct: 162 AGRLRDAVQVLQEMVS-ARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAI 220

Query: 123 TYNGVMDAYGKNGMIKEMESVL-SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           TY+ ++D   K   + E  ++L   +      PDI+T++ +ID   K         +F+ 
Sbjct: 221 TYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEE 280

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           +  +   PT  T+NS+I  Y +A    +A  +  KM      P  ITY  +++ +     
Sbjct: 281 MSCA---PTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGR 337

Query: 242 VSRAREIFDEL--SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           +  A E+F ++  +KL  D  V T  ++++  C  G   +A  L E     G  P   TY
Sbjct: 338 LDDAYELFQQMVANKLSPD--VVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTY 395

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +   Y K+N     ++L+      G VPN
Sbjct: 396 NCVVDGYCKSNQVRKAEELVADFRSRGFVPN 426



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 146/362 (40%), Gaps = 41/362 (11%)

Query: 7   YIADTGIYSKLIAVMGKKGQTR-LAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD---- 61
           Y +D+  ++ ++  +    + R L   L  E+R+ G  PDP   N ++      RD    
Sbjct: 6   YPSDSSTFAVVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDARDTTTA 65

Query: 62  --------------------------KAKALAKALGYFQKMK--GMERCKPNIVTYNILL 93
                                     KA+ L +A+G    MK  GM    P  + +N+++
Sbjct: 66  MALFDKMAELGAVNHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGM---NPGTLLHNVVI 122

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
               +A  +     ++++++++   PD  TY  ++    K G +++   VL  M S +  
Sbjct: 123 GGLCRAGRLRHALGVYRQMNDA-HPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHV 181

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA-RLQGKAEY 212
           PD  T  +++ S       D   ++ + ++H        T+++++    K  RL      
Sbjct: 182 PDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVAL 241

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +  ++T   +TP  +TY  +I   G C    R R+  D   ++       T N+++  YC
Sbjct: 242 LLGEVTRRGFTPDIVTYSTVID--GLC-KAGRLRDAVDIFEEMSCAPTAITYNSLIGGYC 298

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             G   EA  L     +    PD  TY  L  A+ K    +   +L ++M  N + P+  
Sbjct: 299 RAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVV 358

Query: 333 FF 334
            F
Sbjct: 359 TF 360


>gi|159464329|ref|XP_001690394.1| hypothetical protein CHLREDRAFT_114572 [Chlamydomonas reinhardtii]
 gi|158279894|gb|EDP05653.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 287

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 136/289 (47%), Gaps = 5/289 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I+  G   Q R A+ L +EMR+ G   +   Y+AL+   +    KA  L  A   +
Sbjct: 3   YTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCI----KANELDLAQDVY 58

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M   E C PN+VTYNIL+   A  R   +   L   L  S +  ++ TYN V+ A  K
Sbjct: 59  KQML-EEGCSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNK 117

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G  ++   V  +M +   KP   T+  LI +YGK+   +K   +F+ ++    +  + T
Sbjct: 118 SGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVIT 177

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           ++S+I    KA     A  +F KM      P+ +TY  +I    +  +  +A E+F+++ 
Sbjct: 178 YSSLISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQ 237

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             G      T   ++ AY   G    A   FE   + G  PD++ +  L
Sbjct: 238 TQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQSQGCHPDAAVFNSL 286



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 100/192 (52%), Gaps = 9/192 (4%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           A+   Y+ +I+   K GQ   A+ ++ +M  +G +P  + Y ALI+A+     K   + K
Sbjct: 103 AEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAY----GKKGQVEK 158

Query: 69  ALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           AL  F+ M  +G ER   N++TY+ L+ AC +A   +    LF ++H+    P++ TYN 
Sbjct: 159 ALDIFRDMIRRGCER---NVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTYNS 215

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++ A    G  ++   +  +M++  CKPD IT+  LI +Y +   + +  + F+ +    
Sbjct: 216 LIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQSQG 275

Query: 187 EKPTLPTFNSMI 198
             P    FNS++
Sbjct: 276 CHPDAAVFNSLM 287



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 117/253 (46%), Gaps = 6/253 (2%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           N+ TY+ L+  C +A  +D    ++K++ E   +P++ TYN ++D         E   + 
Sbjct: 34  NVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVEASKRKTTERRRLA 93

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             +  +  + ++ T+N +I +  K    ++  +V++ ++ +  KP+  T+ ++I  YGK 
Sbjct: 94  VALVRSGIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKK 153

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR---AREIFDELSKLGKDMKV 261
               KA  +F+ M       + ITY  +I+    C+   R   A E+F ++ K      V
Sbjct: 154 GQVEKALDIFRDMIRRGCERNVITYSSLISA---CEKAGRWEMALELFSKMHKENCKPNV 210

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T N+++ A    G   +A  LFE     G  PDS TY  L  AY +        K  ++
Sbjct: 211 VTYNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQ 270

Query: 322 MEQNGIVPNKRFF 334
           M+  G  P+   F
Sbjct: 271 MQSQGCHPDAAVF 283



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 118/255 (46%), Gaps = 5/255 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L+ V  K  +  LA  ++ +M   GC P+   YN LI      R   +    A+   
Sbjct: 38  YSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVEASKRKTTERRRLAVALV 97

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +   G++     + TYN ++ AC ++   +Q   +++++  + + P   TY  ++ AYGK
Sbjct: 98  RS--GIQ---AEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGK 152

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +++   +   M    C+ ++IT++ LI +  K   ++   ++F  +     KP + T
Sbjct: 153 KGQVEKALDIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVT 212

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS+I          KA  +F++M      P  ITY  +IT Y       RA + F+++ 
Sbjct: 213 YNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQ 272

Query: 254 KLGKDMKVSTLNAML 268
             G     +  N+++
Sbjct: 273 SQGCHPDAAVFNSLM 287



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 115/243 (47%)

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           TY  ++  C   + + +   L  E+    +  +++TY+ +M+   K   +   + V  +M
Sbjct: 2   TYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQM 61

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
               C P+++T+N+LID    ++   +  ++  +L+ S  +  + T+N++I    K+   
Sbjct: 62  LEEGCSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSGQP 121

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            +A  V++KM A    PS  TY  +I+ YG    V +A +IF ++ + G +  V T +++
Sbjct: 122 EQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYSSL 181

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           + A    G    A  LF   H     P+  TY  L  A +     E   +L ++M+  G 
Sbjct: 182 ISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQTQGC 241

Query: 328 VPN 330
            P+
Sbjct: 242 KPD 244


>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
 gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 159/371 (42%), Gaps = 42/371 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  YS L++   K G+   A+ LF EM+ +G  P   +Y  L+  +  + D+     KA
Sbjct: 201 DTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGDE-----KA 255

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           LG  Q+MK  + C P + TY  L++   ++  V+   ++F  + +    PD+   N +++
Sbjct: 256 LGLVQEMKD-KGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLIN 314

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITF------------------------------ 159
            +GK G +++   +  +M+S +C P+++T+                              
Sbjct: 315 IFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVT 374

Query: 160 ------NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
                 ++LID + K    +K   + + +      P    + S+I   GKA+    A  +
Sbjct: 375 PSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANEL 434

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F ++       S   Y  +I   G C   S A ++F+E+ K+G +  V   NA++     
Sbjct: 435 FLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVR 494

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
            G+  EA          G TPD +++ ++     +    E   ++  +M+ + I P+   
Sbjct: 495 AGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVS 554

Query: 334 FLEALETFSSS 344
           +   L + S S
Sbjct: 555 YNTILGSLSRS 565



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 146/314 (46%), Gaps = 6/314 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y++LI  +GK G+   A  +F  M   GC+PD  + N LI        KA  L  AL  F
Sbjct: 274 YTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIF----GKAGRLEDALKLF 329

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARN-VDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            +M+ + +C PN+VTYN +++A  +++    +  + F+++  + + P  +TY+ ++D + 
Sbjct: 330 DQMRSL-KCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGFC 388

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K   +++   +L  M      P    +  LI++ GK + ++   ++F  L  +  + +  
Sbjct: 389 KTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCGRSSAR 448

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            +  MI N GK     +A  +F +M  +   P    Y  +++       +  A      +
Sbjct: 449 IYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTM 508

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            + G    +++ N +L      G P +A  +F    +  + PD+ +Y  +  + +++ M 
Sbjct: 509 EENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTILGSLSRSGMF 568

Query: 313 ELVQKLLKRMEQNG 326
           E   KL++ M   G
Sbjct: 569 EEAAKLMREMGSRG 582



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 159/390 (40%), Gaps = 82/390 (21%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S+++ ++GK      A+ +F ++++  C+P  S YN++I   +      K        + 
Sbjct: 135 SEVVKILGKAKMVNKALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHE----LYH 190

Query: 75  KMKGMERCKPNIVTYNILLRACAQ-------ARNVDQVNA-------------------- 107
           +M     C P+ +TY++L+ A  +        R  D++ A                    
Sbjct: 191 EMCNEGDCFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKS 250

Query: 108 -------LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
                  L +E+ +   AP ++TY  ++   GK+G +++  SV   M  + CKPD++  N
Sbjct: 251 GDEKALGLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLIN 310

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV-----FQ 215
            LI+ +GK    +   ++F  +   K  P + T+N++I    KA  + KA        F+
Sbjct: 311 NLINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVI----KALFESKAPASEAASWFE 366

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK----------------LGKDM 259
           KM A   TPS  TY  +I  +   + V +A  + +E+ +                LGK  
Sbjct: 367 KMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAK 426

Query: 260 KVSTLN-------------------AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           +    N                    M++     G P+EA  LF     +G  PD   Y 
Sbjct: 427 RYEAANELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYN 486

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            L     +A M E     L+ ME+NG  P+
Sbjct: 487 ALMSGLVRAGMIEEAFSALRTMEENGCTPD 516



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 108/228 (47%), Gaps = 7/228 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI    K  +   A+ L  EM   G  P P+ Y +LI A      KAK    A   F
Sbjct: 380 YSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINA----LGKAKRYEAANELF 435

Query: 74  QKMKGMERC-KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            ++K  E C + +   Y ++++   +     +   LF E+ +    PD+Y YN +M    
Sbjct: 436 LELK--ENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLV 493

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + GMI+E  S L  M+ N C PD+ + N++++   +    ++  ++F  +  S  KP   
Sbjct: 494 RAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAV 553

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           ++N+++ +  ++ +  +A  + ++M +  +    ITY  I+   G  D
Sbjct: 554 SYNTILGSLSRSGMFEEAAKLMREMGSRGFEYDHITYSSILEAVGKVD 601



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 121/300 (40%), Gaps = 47/300 (15%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  + + LI + GK G+   A+ LF +MR+  C P+   YN +I A   ++  A   ++A
Sbjct: 305 DVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPA---SEA 361

Query: 70  LGYFQKMKGMERCKPNIVTYNILL-----------------------------------R 94
             +F+KMK      P+  TY+IL+                                    
Sbjct: 362 ASWFEKMKA-NGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIN 420

Query: 95  ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
           A  +A+  +  N LF EL E+        Y  ++   GK G   E   + + MK   C P
Sbjct: 421 ALGKAKRYEAANELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNP 480

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM-IINYGKARLQGKAEY- 212
           D+  +N L+    +      +E+ F +L   +E    P  NS  II  G AR  G+ E  
Sbjct: 481 DVYAYNALMSGLVRAGM---IEEAFSALRTMEENGCTPDLNSHNIILNGLAR-TGRPEQA 536

Query: 213 --VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
             +F KM      P  ++Y  I+           A ++  E+   G +    T +++LEA
Sbjct: 537 TEMFMKMKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMREMGSRGFEYDHITYSSILEA 596



 Score = 38.9 bits (89), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 72/191 (37%), Gaps = 35/191 (18%)

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN-YGKARLQGKAEYV 213
           D+ T+  LI        F +M ++ + ++ S      P   S ++   GKA++  KA  V
Sbjct: 94  DLTTYMPLIRCLDDCGLFGEMWKMIQEMVRSPTCVIGPADLSEVVKILGKAKMVNKALSV 153

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F ++ + K  P+  TY  +I M     +  +  E++ E+   G               C 
Sbjct: 154 FYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMCNEGD--------------CF 199

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
                               PD+ TY +L  A+ K    +   +L   M+ NG+ P  + 
Sbjct: 200 --------------------PDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKI 239

Query: 334 FLEALETFSSS 344
           +   L  +  S
Sbjct: 240 YTTLLAIYFKS 250


>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
 gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
          Length = 453

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 157/351 (44%), Gaps = 20/351 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D+ +++ +I    + G  + AM LF +M+ SGC+P  S +N LI  + +     +AL K 
Sbjct: 82  DSILFNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEAL-KL 140

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L + Q        KPN  TYNIL+RA     N+++   +  ++  S + PD  TYN +  
Sbjct: 141 LEFLQDGG----VKPNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQPDAVTYNTLAR 196

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           AY + G     E ++  M + +  P+  T +++++ Y K      M    + +   KE  
Sbjct: 197 AYAEKGETIRAEEMILEMLNRRVTPNERTCSIIVNGYCKE---GNMVDASRFVFRMKELG 253

Query: 190 TLP---TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            LP    FNS+I  +         + V   M      P  +T+  I+  +     + + +
Sbjct: 254 VLPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCK 313

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           EIF+++ K   +  +   + + + Y   G P +A+ +  +    GV P+      +   +
Sbjct: 314 EIFNDMVKAEIEPDIHAFSILAKGYVRAGEPEKAESILTSMRKYGVHPNVVICTTVISGW 373

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDL 357
             A   E   K+ ++M + G+ PN       L+T+ + + G   G AK  L
Sbjct: 374 CSAGKMEHAMKVYEKMCEIGVSPN-------LKTYETLIWG--YGEAKQPL 415



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 117/262 (44%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           KP ++TY  L+ A  + +    +  L  ++ E+ + PD   +N +++A+ ++G +KE   
Sbjct: 45  KPTLITYTTLVAALTRQKLFKSILRLISKVEENGMKPDSILFNSIINAFSESGNMKEAMK 104

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +  +MK + CKP   TFN LI  YG     ++  ++ + L     KP   T+N ++  + 
Sbjct: 105 LFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKPNQRTYNILVRAWC 164

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
                 +A  +  KM A    P  +TY  +   Y       RA E+  E+          
Sbjct: 165 NKENMEEAWNMVYKMVASGMQPDAVTYNTLARAYAEKGETIRAEEMILEMLNRRVTPNER 224

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T + ++  YC  G   +A         +GV P+   +  L K +      E V ++L  M
Sbjct: 225 TCSIIVNGYCKEGNMVDASRFVFRMKELGVLPNLFVFNSLIKGFLDTMDTEGVDEVLTLM 284

Query: 323 EQNGIVPNKRFFLEALETFSSS 344
           E+NG+ P+   F   +  +SS+
Sbjct: 285 EENGVRPDVVTFSTIMNAWSSA 306



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 154/320 (48%), Gaps = 11/320 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+A + ++   +  + L S++  +G +PD  ++N++I A   + +    + +A+  F
Sbjct: 51  YTTLVAALTRQKLFKSILRLISKVEENGMKPDSILFNSIINAFSESGN----MKEAMKLF 106

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KMK    CKP   T+N L++    A   ++   L + L +  + P+  TYN ++ A+  
Sbjct: 107 RKMKE-SGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKPNQRTYNILVRAWCN 165

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              ++E  +++ +M ++  +PD +T+N L  +Y ++    + E++   +++ +  P   T
Sbjct: 166 KENMEEAWNMVYKMVASGMQPDAVTYNTLARAYAEKGETIRAEEMILEMLNRRVTPNERT 225

Query: 194 FNSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFD 250
            + ++  Y K   +   + +VF +M  +   P+   +  +I   G+ D  +     E+  
Sbjct: 226 CSIIVNGYCKEGNMVDASRFVF-RMKELGVLPNLFVFNSLIK--GFLDTMDTEGVDEVLT 282

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            + + G    V T + ++ A+   G   +   +F +     + PD   + +L K Y +A 
Sbjct: 283 LMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPDIHAFSILAKGYVRAG 342

Query: 311 MKELVQKLLKRMEQNGIVPN 330
             E  + +L  M + G+ PN
Sbjct: 343 EPEKAESILTSMRKYGVHPN 362



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 124/272 (45%), Gaps = 5/272 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L     +KG+T  A  +  EM N    P+    + ++  +     K   +  A
Sbjct: 187 DAVTYNTLARAYAEKGETIRAEEMILEMLNRRVTPNERTCSIIVNGYC----KEGNMVDA 242

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
             +  +MK +    PN+  +N L++      + + V+ +   + E+ + PD+ T++ +M+
Sbjct: 243 SRFVFRMKEL-GVLPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMN 301

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A+   G + + + + + M   + +PDI  F++L   Y +    +K E +  S+      P
Sbjct: 302 AWSSAGRMDKCKEIFNDMVKAEIEPDIHAFSILAKGYVRAGEPEKAESILTSMRKYGVHP 361

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +    ++I  +  A     A  V++KM  +  +P+  TYE +I  YG      +A E+ 
Sbjct: 362 NVVICTTVISGWCSAGKMEHAMKVYEKMCEIGVSPNLKTYETLIWGYGEAKQPLKAEELL 421

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
             + + G   K  T+  + +A+   GL +E++
Sbjct: 422 QVMEEKGVFPKKGTMQLIADAWRAIGLLSESE 453



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 112/242 (46%)

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           + +++F  L +    P + TY  ++ A  +  + K +  ++S+++ N  KPD I FN +I
Sbjct: 31  EAHSIFNSLMDEGHKPTLITYTTLVAALTRQKLFKSILRLISKVEENGMKPDSILFNSII 90

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           +++ +     +  ++F+ +  S  KPT  TFN++I  YG A    +A  + + +      
Sbjct: 91  NAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVK 150

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
           P+  TY  ++  +   +N+  A  +  ++   G      T N +  AY   G    A+ +
Sbjct: 151 PNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQPDAVTYNTLARAYAEKGETIRAEEM 210

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
                N  VTP+  T  ++   Y K        + + RM++ G++PN   F   ++ F  
Sbjct: 211 ILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFRMKELGVLPNLFVFNSLIKGFLD 270

Query: 344 SL 345
           ++
Sbjct: 271 TM 272



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 91/206 (44%)

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +M+     G  +E  S+ + +     KP +IT+  L+ +  +++ F  + ++   +  + 
Sbjct: 19  LMNVLIGKGKPREAHSIFNSLMDEGHKPTLITYTTLVAALTRQKLFKSILRLISKVEENG 78

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            KP    FNS+I  + ++    +A  +F+KM      P+  T+  +I  YG       A 
Sbjct: 79  MKPDSILFNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEAL 138

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           ++ + L   G      T N ++ A+C      EA  +       G+ PD+ TY  L +AY
Sbjct: 139 KLLEFLQDGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQPDAVTYNTLARAY 198

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKR 332
            +       ++++  M    + PN+R
Sbjct: 199 AEKGETIRAEEMILEMLNRRVTPNER 224



 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 36/70 (51%)

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           G P EA  +F +  + G  P   TY  L  A T+  + + + +L+ ++E+NG+ P+   F
Sbjct: 27  GKPREAHSIFNSLMDEGHKPTLITYTTLVAALTRQKLFKSILRLISKVEENGMKPDSILF 86

Query: 335 LEALETFSSS 344
              +  FS S
Sbjct: 87  NSIINAFSES 96


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 146/352 (41%), Gaps = 40/352 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI ++ KKG+ R A  + S++      PD   Y +LI  H   R+    L  A G F
Sbjct: 201 FNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRN----LDLAFGVF 256

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   E C PN VTY+ L+        VD+   + +E+ E  + P +YTY   + A   
Sbjct: 257 DRMVK-EGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCA 315

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
               +E   +++RMK   C+P++ T+  LI    +    +    ++  ++     P   T
Sbjct: 316 IEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVT 375

Query: 194 FNSMIINY-----------------GKARLQG------------------KAEYVFQKMT 218
           +N++I                    G   L                    KA  +F+KM 
Sbjct: 376 YNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKML 435

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
            M   P+ +TY  +I  Y    NV+ A  + D + + G +    T N ++  +   G   
Sbjct: 436 KMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLE 495

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            A   F+     G+ P+  +Y  L   ++K    ++   LLKRME+ G  PN
Sbjct: 496 SASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPN 547



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 149/339 (43%), Gaps = 5/339 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+R    +   Y+ LI+ + + G+  +A+ L+ +M   G  P+   YNALI         
Sbjct: 330 KKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELC----V 385

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
               + AL  F  M+G      N  TYN +++      ++++   LF+++ +    P + 
Sbjct: 386 GGRFSTALKIFHWMEG-HGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVV 444

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN +++ Y   G +     +L  MK N C+PD  T+N L+  + K    +     F+ +
Sbjct: 445 TYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEM 504

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           +     P   ++ ++I  + K      A  + ++M  M   P+  +Y  +I      +  
Sbjct: 505 VECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRF 564

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           S A +I D++ + G    V T   +++  C NG    A  +F +       P+  TY  L
Sbjct: 565 SEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSL 624

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
                +    +  + LLK ME+ G+ P++  F   ++ F
Sbjct: 625 IYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGF 663



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 142/306 (46%), Gaps = 15/306 (4%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           +A+T  Y+++I  +   G    AM LF +M   G  P    YN LI  +L T+      A
Sbjct: 405 LANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYL-TKGNVNNAA 463

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           + L   ++      C+P+  TYN L+   ++   ++  +  F+E+ E  L P+  +Y  +
Sbjct: 464 RLLDLMKE----NGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTAL 519

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D + K+G +    S+L RM+   C P++ ++N +I+   K   F + E++   ++    
Sbjct: 520 IDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGL 579

Query: 188 KPTLPTFNSMIINYGKARLQGKAEY---VFQKMTAMKYTPSFITYECIITMYGYCDN--V 242
            P + T+ ++I   G  R  G+ ++   +F  M   K  P+  TY  +I  YG C     
Sbjct: 580 LPNVITYTTLI--DGLCR-NGRTQFAFKIFHDMEKRKCLPNLYTYSSLI--YGLCQEGKA 634

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A  +  E+ + G      T  ++++ + + G    A LL     +MG  P+  TY +L
Sbjct: 635 DEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVL 694

Query: 303 YKAYTK 308
            K   K
Sbjct: 695 LKGLQK 700



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 144/344 (41%), Gaps = 16/344 (4%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + +T  Y+ LI  +   G+   A+ +F  M   G   +   YN +I       D    + 
Sbjct: 370 VPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGD----IE 425

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           KA+  F+KM  M    P +VTYN L+       NV+    L   + E+   PD +TYN +
Sbjct: 426 KAMVLFEKMLKMGPL-PTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNEL 484

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  + K G ++        M      P+ +++  LID + K    D    + K +     
Sbjct: 485 VSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGC 544

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRA 245
            P + ++N++I    K     +AE +  KM      P+ ITY  +I   G C N     A
Sbjct: 545 NPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLID--GLCRNGRTQFA 602

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            +IF ++ K      + T ++++   C  G   EA++L +     G+ PD  T+  L   
Sbjct: 603 FKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDG 662

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQ 349
           +      +    LL+RM   G  PN R       T+S  L G Q
Sbjct: 663 FVVLGRIDHAFLLLRRMVDMGCKPNYR-------TYSVLLKGLQ 699



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 115/274 (41%), Gaps = 14/274 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI     KG    A  L   M+ +GC PD   YN L++       K   L  A  YF
Sbjct: 446 YNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGF----SKWGKLESASFYF 501

Query: 74  QKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           Q+M     C   PN V+Y  L+   ++   VD   +L K + E    P++ +YN V++  
Sbjct: 502 QEMV---ECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGL 558

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K     E E +  +M      P++IT+  LID   +        ++F  +   K  P L
Sbjct: 559 SKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNL 618

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T++S+I    +     +AE + ++M      P  +T+  +I  +     +  A  +   
Sbjct: 619 YTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRR 678

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
           +  +G      T + +L+     GL  E  LL E
Sbjct: 679 MVDMGCKPNYRTYSVLLK-----GLQKECLLLEE 707



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 125/297 (42%), Gaps = 39/297 (13%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P+++T+N L+   ++   V +   +  ++ +  L+PD++TY  ++  + +N  +     
Sbjct: 195 QPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFG 254

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI---- 198
           V  RM    C P+ +T++ LI+        D+   + + ++    +PT+ T+   I    
Sbjct: 255 VFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALC 314

Query: 199 -----------------------------INYGKARLQGKAEY---VFQKMTAMKYTPSF 226
                                        +  G +RL GK E    ++ KM      P+ 
Sbjct: 315 AIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRL-GKLEVAIGLYHKMLKEGLVPNT 373

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           +TY  +I         S A +IF  +   G      T N +++  C+ G   +A +LFE 
Sbjct: 374 VTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEK 433

Query: 287 SHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
              MG  P   TY  L   Y TK N+     +LL  M++NG  P++  + E +  FS
Sbjct: 434 MLKMGPLPTVVTYNTLINGYLTKGNVNN-AARLLDLMKENGCEPDEWTYNELVSGFS 489



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 106/242 (43%), Gaps = 4/242 (1%)

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
           ++++AC     + +V     E+        +Y+ N ++    K  M++   ++  +M ++
Sbjct: 133 LMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNS 192

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
             +P ++TFN LI+   K+    + E +   +      P + T+ S+I+ + + R    A
Sbjct: 193 GIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLA 252

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAML 268
             VF +M      P+ +TY  +I   G C+   V  A ++ +E+ + G +  V T    +
Sbjct: 253 FGVFDRMVKEGCDPNSVTYSTLIN--GLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPI 310

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
            A C      EA  L       G  P+  TY  L    ++    E+   L  +M + G+V
Sbjct: 311 TALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLV 370

Query: 329 PN 330
           PN
Sbjct: 371 PN 372



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 11/190 (5%)

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
           N L+    K +  +    ++K +++S  +P+L TFN++I    K     +AE +  ++  
Sbjct: 167 NTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQ 226

Query: 220 MKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
              +P   TY  +I   G+C   N+  A  +FD + K G D    T + ++   C  G  
Sbjct: 227 YDLSPDVFTYTSLI--LGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRV 284

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEA 337
            EA  + E     G+ P   TY L   A      +E   +L+ RM++ G  PN       
Sbjct: 285 DEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPN------- 337

Query: 338 LETFSSSLAG 347
           ++T+++ ++G
Sbjct: 338 VQTYTALISG 347


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 140/291 (48%), Gaps = 13/291 (4%)

Query: 41  GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGM---ERCKPNIVTYNILLRACA 97
           GC P    +NAL+ A +    +A+  + A  +F  +       R  PN+ TYNI+LR+  
Sbjct: 115 GCNPGVRSHNALLDAFV----RARRFSDADAFFASLSHGAFGRRIAPNLQTYNIMLRSLC 170

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
              ++D+   LF  L    LAPD  TY+ +M  + KN  +     +L  M S + +PD +
Sbjct: 171 VRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAV 230

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSK-EKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
            +N L+    +   F+K  +V++ L+      P L T+N M+    K  +  +A  V+++
Sbjct: 231 CYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWER 290

Query: 217 MTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           M A  + P  ITY  +I  +G C   +V  A  ++ E+ K G    V   N++L+ +C  
Sbjct: 291 MVANNHQPDMITYGTMI--HGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHA 348

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
           G   EA   F +S ++    + ++Y ++ K      M +    L + +E++
Sbjct: 349 GRVGEA-WKFWDSMSVSGIRNVTSYNIMLKGLFDGGMVDKATDLWELLEKD 398



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 111/226 (49%), Gaps = 8/226 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           ++ IY+ LI    +  +   A+ ++S+M  + C P    YN LI    H   KA+   +A
Sbjct: 474 NSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLI----HGLCKAEKYLEA 529

Query: 70  LGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
             + ++M  +E+ C  ++ TY  L+R   + + +D   AL+ ++ +  L  D+  +N ++
Sbjct: 530 SRFTREM--LEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILI 587

Query: 129 DAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
                 G + E   +LS MK  N C P+++T+N L+D + +   FDK   ++ +++ +  
Sbjct: 588 HGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILENGL 647

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
            P + ++N+ I          +   +  +M A    P+ IT+  ++
Sbjct: 648 VPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPTAITWNILV 693



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/330 (19%), Positives = 142/330 (43%), Gaps = 10/330 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R    D   YS L++   K  +   A++L  EM +   +PD   YNAL+       + 
Sbjct: 186 RCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALLGGCFRNGE- 244

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
                KA+  ++++       PN+ TYN++L    +     +   +++ +  +   PD+ 
Sbjct: 245 ---FEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMI 301

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++    ++  +     V S M      PD++ +N L+  +       +  + + S+
Sbjct: 302 TYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSM 361

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA-MKYTPSFITYECIITMYGYCDN 241
             S  +  + ++N M+       +  KA  +++ +      +P  +T+  +I  +G C+ 
Sbjct: 362 SVSGIR-NVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMI--HGLCEK 418

Query: 242 --VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
              +++ +I +E    GK++   + ++M+   C +G   +A  L+E        P+S  Y
Sbjct: 419 GFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIY 478

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             L   + +A+      ++  +M +N   P
Sbjct: 479 NALINGFCQASKFSDAIRVYSQMAENDCSP 508



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/362 (20%), Positives = 143/362 (39%), Gaps = 51/362 (14%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  +I  + +      A  ++SEM  +G  PD  +YN+L+    H    A  + +A
Sbjct: 299 DMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCH----AGRVGEA 354

Query: 70  LGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELH-ESILAPDI----- 121
             ++  M   G+     N+ +YNI+L+       VD+   L++ L  +  L+PD+     
Sbjct: 355 WKFWDSMSVSGIR----NVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFST 410

Query: 122 ------------------------------YTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151
                                         ++Y+ ++    K+G + +   +  ++  + 
Sbjct: 411 MIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDS 470

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
            KP+   +N LI+ + +   F    +V+  +  +   PT  T+N++I    KA    +A 
Sbjct: 471 FKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEAS 530

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLE 269
              ++M          TY  +I   G C +  +  A  +++++   G    V   N ++ 
Sbjct: 531 RFTREMLEKGCMLDVNTYGSLIR--GLCRDKKIDGALALWNQILDKGLQTDVVMHNILIH 588

Query: 270 AYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             C  G   EA  LL E        P+  TY  L   + +    +    L   + +NG+V
Sbjct: 589 GLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILENGLV 648

Query: 329 PN 330
           P+
Sbjct: 649 PD 650



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 119/300 (39%), Gaps = 34/300 (11%)

Query: 43  RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
           RP  S   AL+   L    +A     AL  F+++     C P + ++N LL A  +AR  
Sbjct: 79  RPRFSESAALVV--LSAFSRALMPDAALAAFRRLPSFLGCNPGVRSHNALLDAFVRARRF 136

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
              +A F  L                 A+G+                 +  P++ T+N++
Sbjct: 137 SDADAFFASLSHG--------------AFGR-----------------RIAPNLQTYNIM 165

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           + S   R   D+   +F SL      P   T+++++  + K      A Y+  +M + + 
Sbjct: 166 LRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEV 225

Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSK-LGKDMKVSTLNAMLEAYCMNGLPTEAD 281
            P  + Y  ++          +A  ++++L +  G    ++T N ML+  C  G+  EA 
Sbjct: 226 QPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAG 285

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            ++E        PD  TY  +     ++   +   ++   M + G+VP+   +   L+ F
Sbjct: 286 DVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGF 345



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/261 (20%), Positives = 112/261 (42%), Gaps = 12/261 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I+ + K G+   A+ L+ ++     +P+  +YNALI        +A   + A+  +
Sbjct: 443 YSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFC----QASKFSDAIRVY 498

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   + C P  +TYN L+    +A    + +   +E+ E     D+ TY  ++    +
Sbjct: 499 SQMAEND-CSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCR 557

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK----P 189
           +  I    ++ +++     + D++  N+LI         D+  Q+   +   KEK    P
Sbjct: 558 DKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEM---KEKNNCCP 614

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+N+++  + +     KA  ++  +      P  I+Y   I     C+      ++ 
Sbjct: 615 NVVTYNTLMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLCSCNRTPEGVQLL 674

Query: 250 DELSKLGKDMKVSTLNAMLEA 270
           +E+   G      T N ++ A
Sbjct: 675 NEMLASGIIPTAITWNILVRA 695


>gi|297839237|ref|XP_002887500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333341|gb|EFH63759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 989

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 149/335 (44%), Gaps = 9/335 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  ++ +I   G  G    A  L  +M   G  PD   YN L++ H    D    +  A
Sbjct: 336 DTVTFNTMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYNILLSLHADAGD----IEAA 391

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L Y++ ++ +    P+ VT+  +L    Q + V +  A+  E+  + +  D ++   +M 
Sbjct: 392 LKYYRNIRKVG-LFPDTVTHRAVLHILCQRKMVAEAEAVMAEMDRNSIRIDEHSVPVIMQ 450

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF--KSLMHSKE 187
            Y   G++ + +++  R + + C     T   ++D Y ++  + + E VF  K  M  + 
Sbjct: 451 MYVNEGLVGQAKALFERFQLD-CVLSSTTLAAVMDVYAEKGLWVEAETVFYGKRNMTGQR 509

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
              L  +N MI  YGKA+L  KA  +F+ M      P   TY  +I M    D V  A+ 
Sbjct: 510 NDVL-EYNVMIKAYGKAKLHEKALSIFKGMKNQGTWPDECTYNSLIQMLAGVDLVDDAQR 568

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           I  E+   G      T  A++ +Y   GL ++A  L+E     GV P+   Y  L   + 
Sbjct: 569 ILAEMLDSGCKPGCKTYAALIASYVRLGLLSDAVDLYEAMKKTGVKPNEVVYGSLINGFA 628

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           ++ M E   +  K ME++G+  N       ++ +S
Sbjct: 629 ESGMVEEAIQYFKLMEEHGVQSNHIVLTSLIKAYS 663



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 146/372 (39%), Gaps = 81/372 (21%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T  ++ LI + GK G+   A  LFSEM  SG   D   +N +I    HT      L++A 
Sbjct: 302 TSTFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMI----HTCGTHGHLSEAE 357

Query: 71  GYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
              +KM  KG+    P+  TYNILL   A A +++     ++ + +  L PD  T+  V+
Sbjct: 358 SLLKKMEEKGI---SPDTKTYNILLSLHADAGDIEAALKYYRNIRKVGLFPDTVTHRAVL 414

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPD-----II-------------------------- 157
               +  M+ E E+V++ M  N  + D     +I                          
Sbjct: 415 HILCQRKMVAEAEAVMAEMDRNSIRIDEHSVPVIMQMYVNEGLVGQAKALFERFQLDCVL 474

Query: 158 ---TFNLLIDSYGKRQAFDKMEQVF--KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
              T   ++D Y ++  + + E VF  K  M  +    L  +N MI  YGKA+L  KA  
Sbjct: 475 SSTTLAAVMDVYAEKGLWVEAETVFYGKRNMTGQRNDVL-EYNVMIKAYGKAKLHEKALS 533

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +F+ M      P   TY  +I M    D V  A+ I  E               ML++ C
Sbjct: 534 IFKGMKNQGTWPDECTYNSLIQMLAGVDLVDDAQRILAE---------------MLDSGC 578

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
                                P   TY  L  +Y +  +      L + M++ G+ PN+ 
Sbjct: 579 --------------------KPGCKTYAALIASYVRLGLLSDAVDLYEAMKKTGVKPNEV 618

Query: 333 FFLEALETFSSS 344
            +   +  F+ S
Sbjct: 619 VYGSLINGFAES 630



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 121/286 (42%), Gaps = 23/286 (8%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           + L  F+  +  +   PN++ YNI+LRA  +A   D++   + E+  + + P   TY  +
Sbjct: 121 RVLRVFRFFQSHQSYVPNVIHYNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYGML 180

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK- 186
           +D YGK G++KE    +  M      PD +T   ++  +     FD+ ++ FK     K 
Sbjct: 181 VDVYGKAGLVKEALLWIKHMGQRMHFPDEVTMATVVRVFKNSGEFDRADRFFKGWCAGKV 240

Query: 187 -------------------EKPT-LPTFNSM-IINYGKARLQGKAEYVFQKMTAMKYTPS 225
                              + P  L  F SM +   G      K+ +      +    P 
Sbjct: 241 NLDDLDLDSIDDFPKNGSAQSPVNLKQFLSMELFKVGARNPIEKSLHFASGSDSSPRKPR 300

Query: 226 FI-TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 284
              T+  +I +YG    ++ A  +F E+ K G  +   T N M+     +G  +EA+ L 
Sbjct: 301 LTSTFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLL 360

Query: 285 ENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +     G++PD+ TY +L   +  A   E   K  + + + G+ P+
Sbjct: 361 KKMEEKGISPDTKTYNILLSLHADAGDIEAALKYYRNIRKVGLFPD 406



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 118/251 (47%), Gaps = 3/251 (1%)

Query: 83  KPNIV-TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           KP +  T+N L+    +A  ++    LF E+ +S +  D  T+N ++   G +G + E E
Sbjct: 298 KPRLTSTFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAE 357

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
           S+L +M+     PD  T+N+L+  +      +   + ++++      P   T  +++   
Sbjct: 358 SLLKKMEEKGISPDTKTYNILLSLHADAGDIEAALKYYRNIRKVGLFPDTVTHRAVLHIL 417

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
            + ++  +AE V  +M          +   I+ MY     V +A+ +F+   +L   +  
Sbjct: 418 CQRKMVAEAEAVMAEMDRNSIRIDEHSVPVIMQMYVNEGLVGQAKALFERF-QLDCVLSS 476

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNM-GVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           +TL A+++ Y   GL  EA+ +F    NM G   D   Y ++ KAY KA + E    + K
Sbjct: 477 TTLAAVMDVYAEKGLWVEAETVFYGKRNMTGQRNDVLEYNVMIKAYGKAKLHEKALSIFK 536

Query: 321 RMEQNGIVPNK 331
            M+  G  P++
Sbjct: 537 GMKNQGTWPDE 547



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/271 (19%), Positives = 125/271 (46%), Gaps = 1/271 (0%)

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F   + M   + +++ YN++++A  +A+  ++  ++FK +      PD  TYN ++    
Sbjct: 499 FYGKRNMTGQRNDVLEYNVMIKAYGKAKLHEKALSIFKGMKNQGTWPDECTYNSLIQMLA 558

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
              ++ + + +L+ M  + CKP   T+  LI SY +         +++++  +  KP   
Sbjct: 559 GVDLVDDAQRILAEMLDSGCKPGCKTYAALIASYVRLGLLSDAVDLYEAMKKTGVKPNEV 618

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            + S+I  + ++ +  +A   F+ M       + I    +I  Y     +  AR ++D++
Sbjct: 619 VYGSLINGFAESGMVEEAIQYFKLMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKM 678

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G    V+  N+ML      G+ +EA+ +F +    G T D  ++  +   Y    M 
Sbjct: 679 KDSGGGPDVAASNSMLSLCADLGIVSEAESIFNDLREKG-TCDVISFATMMYLYKGMGML 737

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
           +   ++ + M ++G++ +   F + L  +++
Sbjct: 738 DEAIEVAEEMRESGLLRDCTSFNQVLACYAA 768



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 131/333 (39%), Gaps = 9/333 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y  LI    + G    A+  F  M   G + +  V  +LI A+     K   L +A   
Sbjct: 619 VYGSLINGFAESGMVEEAIQYFKLMEEHGVQSNHIVLTSLIKAY----SKVGCLEEARRV 674

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           + KMK      P++   N +L  CA    V +  ++F +L E     D+ ++  +M  Y 
Sbjct: 675 YDKMKD-SGGGPDVAASNSMLSLCADLGIVSEAESIFNDLREKGTC-DVISFATMMYLYK 732

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS-LMHSKEKPTL 191
             GM+ E   V   M+ +    D  +FN ++  Y       +  ++F   L+  K     
Sbjct: 733 GMGMLDEAIEVAEEMRESGLLRDCTSFNQVLACYAADGQLRECCELFHEMLVERKLLLDW 792

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            TF ++     K  +  +A  V Q  TA        T     T++      + A E   E
Sbjct: 793 GTFKTLFTLLKKGGVPSEA--VAQLQTAYNEAKPLATPAITATLFSAMGLYAYALESCQE 850

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           L++     +    NA++  Y  +G    A   +      G+ PD  T   L   Y KA M
Sbjct: 851 LTRDEIPREHYAYNAVIYTYSASGDIDMALKTYMRMQEKGLEPDVVTQAYLVGIYGKAGM 910

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            E V+++  R+    + PN+  F    + + S+
Sbjct: 911 VEGVKRVHSRLTFGELEPNQSLFKAVRDAYVSA 943



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 70/350 (20%), Positives = 139/350 (39%), Gaps = 28/350 (8%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           Q  + Y+ +   Y+ ++  +G+ G+       + EM ++G  P  + Y  L+  +     
Sbjct: 130 QSHQSYVPNVIHYNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYGMLVDVY----G 185

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFK--------ELH 113
           KA  + +AL + + M G     P+ VT   ++R    +   D+ +  FK           
Sbjct: 186 KAGLVKEALLWIKHM-GQRMHFPDEVTMATVVRVFKNSGEFDRADRFFKGWCAGKVNLDD 244

Query: 114 ESILAPDIYTYNGVMDA--------------YGKNGMIKEMESVLSRMKSNQCKPDII-T 158
             + + D +  NG   +               G    I++     S   S+  KP +  T
Sbjct: 245 LDLDSIDDFPKNGSAQSPVNLKQFLSMELFKVGARNPIEKSLHFASGSDSSPRKPRLTST 304

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           FN LID YGK    +    +F  ++ S       TFN+MI   G      +AE + +KM 
Sbjct: 305 FNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKME 364

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
               +P   TY  +++++    ++  A + +  + K+G      T  A+L   C   +  
Sbjct: 365 EKGISPDTKTYNILLSLHADAGDIEAALKYYRNIRKVGLFPDTVTHRAVLHILCQRKMVA 424

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           EA+ +        +  D  +  ++ + Y    +    + L +R + + ++
Sbjct: 425 EAEAVMAEMDRNSIRIDEHSVPVIMQMYVNEGLVGQAKALFERFQLDCVL 474



 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 50/109 (45%)

Query: 110 KELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR 169
           +EL    +  + Y YN V+  Y  +G I        RM+    +PD++T   L+  YGK 
Sbjct: 849 QELTRDEIPREHYAYNAVIYTYSASGDIDMALKTYMRMQEKGLEPDVVTQAYLVGIYGKA 908

Query: 170 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
              + +++V   L   + +P    F ++   Y  A  Q  A+ V ++M+
Sbjct: 909 GMVEGVKRVHSRLTFGELEPNQSLFKAVRDAYVSANRQDLADVVKKEMS 957


>gi|302766812|ref|XP_002966826.1| hypothetical protein SELMODRAFT_11024 [Selaginella moellendorffii]
 gi|300164817|gb|EFJ31425.1| hypothetical protein SELMODRAFT_11024 [Selaginella moellendorffii]
          Length = 484

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 146/339 (43%), Gaps = 9/339 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+++     D+  ++ +I     +GQ   AM +  EMR   CRP  S YN LI  +    
Sbjct: 77  MEEEDGLAPDSVCFNTVINGWCNEGQMEEAMRVVQEMRQKNCRPTTSTYNTLIKGYGVAG 136

Query: 61  DKAKALAKALGYFQKMK-------GMER-CKPNIVTYNILLRACAQARNVDQVNALFKEL 112
              +A    L    K +       G+E   +PN+ T N LL A  +   +++   +   +
Sbjct: 137 QAEQAQQLVLHLLNKTRNSPSSEDGLEPVARPNLRTMNTLLNAWCREGRLEEAWRVVAMI 196

Query: 113 HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 172
             + + PD  TYN +  AY   G + E+E +++ MK+ + KP++ T+ +LI  Y +    
Sbjct: 197 KSAGMQPDAVTYNTLAKAYAAAGRVAELEDLIADMKNARLKPNLRTYAILISCYCQNGMP 256

Query: 173 DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG-KAEYVFQKMTAMKYTPSFITYEC 231
           ++  Q+   L      P +  FN+++  Y +   Q  K E V   M A    P   TY  
Sbjct: 257 ERGLQLLSRLKFEGLHPDVVAFNTLLKGYSQENDQQLKLEMVLDLMAANGVRPDVTTYST 316

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           I+  +       +A+ I  E+ +      V     + + Y  +G   EA+ L ++    G
Sbjct: 317 IMNWWSSAGMADKAQTILLEMQQDRVKPDVRAFAILAKGYVRSGRTHEAESLLQDMSLHG 376

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           V P+   Y  +   +      +   ++L+ M + G  PN
Sbjct: 377 VAPNVVVYTTIISGWCSMGRMDDALRVLELMLERGEAPN 415



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/309 (20%), Positives = 124/309 (40%), Gaps = 56/309 (18%)

Query: 79  MERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI-LAPDIYTYNGVMDAYGKNGMI 137
           M+  +P++  Y + +      + + +   L K++ E   LAPD   +N V++ +   G +
Sbjct: 44  MQGHRPSVECYTVAIAEVVAEKKMSEAQQLLKQMEEEDGLAPDSVCFNTVINGWCNEGQM 103

Query: 138 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE---------- 187
           +E   V+  M+   C+P   T+N LI  YG     ++ +Q+   L++             
Sbjct: 104 EEAMRVVQEMRQKNCRPTTSTYNTLIKGYGVAGQAEQAQQLVLHLLNKTRNSPSSEDGLE 163

Query: 188 ---KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT---PSFITYECIITMYGYCDN 241
              +P L T N+++  + +   +G+ E  ++ +  +K     P  +TY  +   Y     
Sbjct: 164 PVARPNLRTMNTLLNAWCR---EGRLEEAWRVVAMIKSAGMQPDAVTYNTLAKAYAAAGR 220

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE-----ADLLFENSH-------- 288
           V+   ++  ++        + T   ++  YC NG+P       + L FE  H        
Sbjct: 221 VAELEDLIADMKNARLKPNLRTYAILISCYCQNGMPERGLQLLSRLKFEGLHPDVVAFNT 280

Query: 289 -----------------------NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
                                    GV PD +TY  +   ++ A M +  Q +L  M+Q+
Sbjct: 281 LLKGYSQENDQQLKLEMVLDLMAANGVRPDVTTYSTIMNWWSSAGMADKAQTILLEMQQD 340

Query: 326 GIVPNKRFF 334
            + P+ R F
Sbjct: 341 RVKPDVRAF 349



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 132/292 (45%), Gaps = 6/292 (2%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           L+    ++G+   A  + + ++++G +PD   YN L  A+      A  +A+       M
Sbjct: 176 LLNAWCREGRLEEAWRVVAMIKSAGMQPDAVTYNTLAKAYA----AAGRVAELEDLIADM 231

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK-NG 135
           K   R KPN+ TY IL+    Q    ++   L   L    L PD+  +N ++  Y + N 
Sbjct: 232 KNA-RLKPNLRTYAILISCYCQNGMPERGLQLLSRLKFEGLHPDVVAFNTLLKGYSQEND 290

Query: 136 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195
              ++E VL  M +N  +PD+ T++ +++ +      DK + +   +   + KP +  F 
Sbjct: 291 QQLKLEMVLDLMAANGVRPDVTTYSTIMNWWSSAGMADKAQTILLEMQQDRVKPDVRAFA 350

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
            +   Y ++    +AE + Q M+     P+ + Y  II+ +     +  A  + + + + 
Sbjct: 351 ILAKGYVRSGRTHEAESLLQDMSLHGVAPNVVVYTTIISGWCSMGRMDDALRVLELMLER 410

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           G+   ++T+  ++  +C    P EA+ +       G+  DS    ++  A++
Sbjct: 411 GEAPNLNTVQTLVWGFCEARQPREAEEMVAAMAAAGLPVDSKCLDMIASAWS 462



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/265 (18%), Positives = 114/265 (43%), Gaps = 10/265 (3%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           L ++M+N+  +P+   Y  LI+ +           + L    ++K  E   P++V +N L
Sbjct: 227 LIADMKNARLKPNLRTYAILISCYCQN----GMPERGLQLLSRLK-FEGLHPDVVAFNTL 281

Query: 93  LRACAQARNVD-QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151
           L+  +Q  +   ++  +   +  + + PD+ TY+ +M+ +   GM  + +++L  M+ ++
Sbjct: 282 LKGYSQENDQQLKLEMVLDLMAANGVRPDVTTYSTIMNWWSSAGMADKAQTILLEMQQDR 341

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
            KPD+  F +L   Y +     + E + + +      P +  + ++I  +        A 
Sbjct: 342 VKPDVRAFAILAKGYVRSGRTHEAESLLQDMSLHGVAPNVVVYTTIISGWCSMGRMDDAL 401

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST--LNAMLE 269
            V + M      P+  T + ++  +G+C+            +     + V +  L+ +  
Sbjct: 402 RVLELMLERGEAPNLNTVQTLV--WGFCEARQPREAEEMVAAMAAAGLPVDSKCLDMIAS 459

Query: 270 AYCMNGLPTEADLLFENSHNMGVTP 294
           A+   G P E D +  +     ++P
Sbjct: 460 AWSALGFPFETDRILASDRRRQLSP 484


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 152/331 (45%), Gaps = 11/331 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +IA + K G    A+ LF EM      P+   YN +I  H+   D    L      +
Sbjct: 191 YNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGD----LESGFRLW 246

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M   G+   KPN++TYN+LL    +A  + +  A+  E+    + PD +TY+ + D +
Sbjct: 247 SQMLRHGL---KPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGH 303

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G  + M S+         K    T ++L++   K     K E+V ++L++S    T 
Sbjct: 304 SRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTT 363

Query: 192 PTFNSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             +N++I  Y +   L+G A  +FQ+M +    P  ITY  +I   G  + ++ A ++  
Sbjct: 364 VIYNTLINGYCQIGDLEG-AFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVI 422

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+ K G +  V T N +++AY   G   +  ++  +    G+ P+  +Y  +  A+ K  
Sbjct: 423 EMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNG 482

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
                  +L  M    ++P  + +   ++ +
Sbjct: 483 KILEAVAILDDMFIKDVLPGAQVYNAIIDAY 513



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 145/317 (45%), Gaps = 9/317 (2%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S L+  + K G+   A  +   + NSG      +YN LI  +    D    L  A   FQ
Sbjct: 332 SILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGD----LEGAFSIFQ 387

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           +MK     +P+ +TYN L+    +   + + + L  E+ ++ + P + T+N ++DAYG+ 
Sbjct: 388 QMKS-RLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRA 446

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G +++   +LS M+    KP+++++  +++++ K     +   +   +      P    +
Sbjct: 447 GQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVY 506

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDEL 252
           N++I  Y +     +A  + +KM +    PS +TY  +I   G C    +S A E+ D L
Sbjct: 507 NAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIK--GLCKQSQISEAEELLDSL 564

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G    V + N ++ A C       A  L +     G+ P   TY++L+ +   A   
Sbjct: 565 RNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRV 624

Query: 313 ELVQKLLKRMEQNGIVP 329
             ++ L ++M    +VP
Sbjct: 625 HEMENLYQQMLDKDVVP 641



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 143/317 (45%), Gaps = 5/317 (1%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T IY+ LI    + G    A  +F +M++   RPD   YNALI        K + + +A 
Sbjct: 363 TVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALING----LGKVERITEAH 418

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
               +M+      P++ T+N L+ A  +A  +++   +  ++ E  L P++ +Y  +++A
Sbjct: 419 DLVIEME-KNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNA 477

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + KNG I E  ++L  M      P    +N +ID+Y +  + D+   + + +  S   P+
Sbjct: 478 FCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPS 537

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           + T+N +I    K     +AE +   +      P  I+Y  +I+   Y  N  RA E+  
Sbjct: 538 IVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEK 597

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+ K G      T   +  +    G   E + L++   +  V P S  Y ++  AY K  
Sbjct: 598 EMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCG 657

Query: 311 MKELVQKLLKRMEQNGI 327
            +  V+ L K M   GI
Sbjct: 658 EESKVEALRKEMSDKGI 674



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 147/344 (42%), Gaps = 9/344 (2%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R  + D   YS L     + G ++  + LF E    G +      + L+        K  
Sbjct: 287 RKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLC----KDG 342

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            ++KA    Q +      +  ++ YN L+    Q  +++   ++F+++   ++ PD  TY
Sbjct: 343 KISKAEEVLQTLVNSGLLQTTVI-YNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITY 401

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N +++  GK   I E   ++  M+ N   P + TFN LID+YG+    +K   +   +  
Sbjct: 402 NALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQE 461

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
              KP + ++ S++  + K     +A  +   M      P    Y  II  Y  C +  +
Sbjct: 462 KGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQ 521

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  + +++   G    + T N +++  C     +EA+ L ++  N G+ PD  +Y  L  
Sbjct: 522 AFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLIS 581

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 348
           A    +  +   +L K M + GI P+ R +        SSL G+
Sbjct: 582 ACCYRSNTDRALELEKEMWKCGIKPSPRTY----RMLFSSLGGA 621



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 131/315 (41%), Gaps = 11/315 (3%)

Query: 22  GKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER 81
           G+    R A  L    R    RPD   +N  + A +   D    L +A+G  ++M     
Sbjct: 131 GRHADVRGAFELLVAAR---ARPDTFTWNKAVQACVVAGD----LDEAVGMLRRMGCDGA 183

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
             PN  +YN+++    +A        LF E+ E  + P+  TYN ++D + K G ++   
Sbjct: 184 PAPNAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGF 243

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
            + S+M  +  KP++IT+N+L+    +     +   V   +   K  P   T++ +   +
Sbjct: 244 RLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGH 303

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDM 259
            +         +F++  ++K       Y C I + G C +  +S+A E+   L   G   
Sbjct: 304 SRTGDSQTMLSLFEE--SVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQ 361

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
                N ++  YC  G    A  +F+   +  + PD  TY  L     K         L+
Sbjct: 362 TTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLV 421

Query: 320 KRMEQNGIVPNKRFF 334
             ME+NG+ P+   F
Sbjct: 422 IEMEKNGVNPSVETF 436


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 150/366 (40%), Gaps = 40/366 (10%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + R+   D   +S LI +  ++G+   A     EM+  G  PD  +Y  +I        +
Sbjct: 289 QHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFC----R 344

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQAR--------------------- 100
           A ++++AL    +M G   C P++VTYN LL   C Q R                     
Sbjct: 345 AGSMSEALRVRDEMVGFG-CLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLC 403

Query: 101 -------------NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
                        N +    LF  L    L PD+ TYN ++D   + G + +   +   M
Sbjct: 404 TFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDM 463

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
            + +  P+ IT+++LIDS+ ++   +        ++     P + T+NS+I  Y ++   
Sbjct: 464 HAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNV 523

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            K +   QKM      P  IT+  +I  Y   +N+  A  +F+ + K        T N +
Sbjct: 524 KKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMI 583

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +  +   G   +A  +F+   + G+ PD  TY  L   +  A   +   +L   M   G 
Sbjct: 584 INGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGF 643

Query: 328 VPNKRF 333
            P+ +F
Sbjct: 644 APDDKF 649



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 150/333 (45%), Gaps = 5/333 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ LI    + G+ + A+  + EM++    PD   ++ LI   L +R      A A
Sbjct: 261 DVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIG--LFSRRGEMDHAGA 318

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
             Y ++MKG+    P+ V Y +++    +A ++ +   +  E+      PD+ TYN +++
Sbjct: 319 --YLREMKGLGLV-PDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLN 375

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K   + + E +L+ M+     PD+ TF  LI  Y ++  F+   Q+F +L+  + +P
Sbjct: 376 GLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRP 435

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+NS+I    +     KA  ++  M A +  P+ ITY  +I  +     V  A    
Sbjct: 436 DVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFL 495

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE+ K G    + T N++++ YC +G   +     +      V PD  T+  L   Y K 
Sbjct: 496 DEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKE 555

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
                   +   ME+  + P+   +   +  FS
Sbjct: 556 ENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFS 588



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 161/359 (44%), Gaps = 25/359 (6%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR-- 60
           ++R    D   ++ LI    + G    A+ L   M N G +P    YN+++      R  
Sbjct: 184 EKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRF 243

Query: 61  DKAKALAKALGYFQKMKGMERCK--PNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
           DKAK +          + M++C   P++ ++NIL+    +   V +    +KE+    + 
Sbjct: 244 DKAKEV---------FRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVT 294

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD+ +++ ++  + + G +    + L  MK     PD + + ++I  + +  +  +  +V
Sbjct: 295 PDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRV 354

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
              ++     P + T+N+++    K      AE +  +M     TP   T+  +I  +GY
Sbjct: 355 RDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLI--HGY 412

Query: 239 C--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
           C   N   A ++FD L +      V T N++++  C  G   +A+ L+++ H   + P+ 
Sbjct: 413 CRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNH 472

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG-SQSGSAK 354
            TY +L  ++ +    E     L  M + G +PN R       T++S + G  +SG+ K
Sbjct: 473 ITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIR-------TYNSIIKGYCRSGNVK 524



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 136/317 (42%), Gaps = 11/317 (3%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           L+AV+ + G   LA   +  + +S    D  V    +   +H+  K      A     +M
Sbjct: 128 LLAVLSRAGWPHLAQEAYRLVLSS----DSEVNAYTLNIMVHSYCKTLEFDGADTVISEM 183

Query: 77  KGMERCK-PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG 135
           +  +RC  P++VT+N+L+ A  +A +VD   AL   +    L P I TYN V+    K+ 
Sbjct: 184 E--KRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHR 241

Query: 136 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195
              + + V   M      PD+ +FN+LI  + +     +  + +K + H    P + +F+
Sbjct: 242 RFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFS 301

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
            +I  + +      A    ++M  +   P  + Y  +I  +    ++S A  + DE+   
Sbjct: 302 CLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGF 361

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK----ANM 311
           G    V T N +L   C      +A+ L       GVTPD  T+  L   Y +     N 
Sbjct: 362 GCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENA 421

Query: 312 KELVQKLLKRMEQNGIV 328
            +L   LL++  +  +V
Sbjct: 422 LQLFDTLLRQRLRPDVV 438



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/374 (21%), Positives = 149/374 (39%), Gaps = 61/374 (16%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S L+ +  ++G +R    + S +  S   P P V++ LI  +  +R   +A       F+
Sbjct: 58  SLLLRMSRRRGASRRE--IVSSLLASSPTPQPQVFDLLIRTYTQSRKPREA-------FE 108

Query: 75  KMKGM--ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD----IYTYNGVM 128
             + +   R        N LL   ++A        L +E +  +L+ D     YT N ++
Sbjct: 109 AFRLLLDHRVPVPASASNALLAVLSRA----GWPHLAQEAYRLVLSSDSEVNAYTLNIMV 164

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS----------------------- 165
            +Y K       ++V+S M+     PD++T N+LID+                       
Sbjct: 165 HSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLK 224

Query: 166 ------------YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
                         K + FDK ++VF+++      P + +FN +I  + +     +A   
Sbjct: 225 PGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKF 284

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           +++M     TP  +++ C+I ++     +  A     E+  LG          ++  +C 
Sbjct: 285 YKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCR 344

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
            G  +EA  + +     G  PD  TY  L     K +     +KLL  ME+ G+ P+   
Sbjct: 345 AGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPD--- 401

Query: 334 FLEALETFSSSLAG 347
               L TF++ + G
Sbjct: 402 ----LCTFTTLIHG 411


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 142/327 (43%), Gaps = 7/327 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI  + ++G+   A+ +   M   GC PD   YN L+ A    R   +AL   L  F
Sbjct: 166 HNPLIHALCERGRVADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALE--LIDF 223

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            + +G   C+PN VTYN+++ A  +  +VDQ   L   L      P+   YN V+  +  
Sbjct: 224 MRAEG---CEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCS 280

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
                + + +L  M    C P+  T N++I++  ++    K+    + +        + T
Sbjct: 281 IERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVT 340

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N++I    +      A  +   M +    P  +TY  ++      D    A E+  ++S
Sbjct: 341 YNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMS 400

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           +  +    ST N ++  +C  GL  +A  +F+     G  P+S+TY  +    TKA   E
Sbjct: 401 QNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKME 460

Query: 314 LVQKLLKRMEQNGIVPNK--RFFLEAL 338
              +LL  M   G   +K  R   E+L
Sbjct: 461 QALELLNEMANKGFNTDKMYRVLTESL 487



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 151/333 (45%), Gaps = 12/333 (3%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD--K 62
           R    D   Y+ L+    K    R A+ L   MR  GC P+   YN +I A     D  +
Sbjct: 192 RGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQ 251

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDI 121
           A+ L  +L      +G   CKPN V YN +L+  C+  R VD  + +  E+      P+ 
Sbjct: 252 ARELLNSL----PSRG---CKPNTVNYNTVLKGFCSIERWVD-ADEILDEMVRENCPPNE 303

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            T N +++   + G+++++   L +M  + C  +++T+N +I    ++   D   ++  +
Sbjct: 304 ATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSN 363

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           +     KP + T+N+++     A     AE +  KM+     P   T+  II+ +     
Sbjct: 364 MQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGL 423

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           + +A E+F ++ + G +   +T + ++      G   +A  L     N G   D   Y++
Sbjct: 424 ILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTD-KMYRV 482

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           L ++  K +  E V +++ +++ +GI P    +
Sbjct: 483 LTESLNKEDKIEEVVQVVHKLQDSGISPQTVLY 515



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 111/293 (37%), Gaps = 37/293 (12%)

Query: 79  MERCKP--NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +E C P     TY  L+    +A  ++    +   +   + A   Y +N ++ A  + G 
Sbjct: 119 VEACGPEATAATYGALVDGYCRAGLLEDARRVVGGMPAHVQASSAYAHNPLIHALCERGR 178

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDS----YGKRQAF-------------------- 172
           + +   VL  M    C PD++T+N+L+ +     G RQA                     
Sbjct: 179 VADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNV 238

Query: 173 -----------DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
                      D+  ++  SL     KP    +N+++  +        A+ +  +M    
Sbjct: 239 IIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVREN 298

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
             P+  T   II        + +     +++SK G    V T NA++   C  G    A 
Sbjct: 299 CPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSAL 358

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            L  N  + G  PD  TY  + K    A+  E  ++L+ +M QN  +P+   F
Sbjct: 359 ELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTF 411



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 111/247 (44%), Gaps = 12/247 (4%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           A+   Y+ +I+ M ++G    A+ L S M++ GC+PD   YN ++   L + D+ +    
Sbjct: 336 ANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKG-LCSADRWE---D 391

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     KM   +R  P+  T+N ++    Q   + Q   +FK++ E    P+  TY+ ++
Sbjct: 392 AEELMIKMSQNDR-LPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTII 450

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
               K G +++   +L+ M +     D + + +L +S  K    +++ QV   L  S   
Sbjct: 451 GGLTKAGKMEQALELLNEMANKGFNTDKM-YRVLTESLNKEDKIEEVVQVVHKLQDSGIS 509

Query: 189 PTLPTFNSMIINYGKARLQGKAEY---VFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
           P    +N++++   +    GK +Y   V   M +    P   TY  +I    Y      A
Sbjct: 510 PQTVLYNTVLLGLCR---NGKTDYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYSKEA 566

Query: 246 REIFDEL 252
           RE+   L
Sbjct: 567 RELLSRL 573



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 10/163 (6%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           Q   + D   ++ +I+   +KG    A  +F +M   GC P+ + Y+ +I        KA
Sbjct: 401 QNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGG----LTKA 456

Query: 64  KALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             + +AL    +M  KG    K     Y +L  +  +   +++V  +  +L +S ++P  
Sbjct: 457 GKMEQALELLNEMANKGFNTDK----MYRVLTESLNKEDKIEEVVQVVHKLQDSGISPQT 512

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164
             YN V+    +NG       VL+ M S  C PD  T+ +LI+
Sbjct: 513 VLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIE 555



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 82/205 (40%), Gaps = 3/205 (1%)

Query: 139 EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 198
           ++++ L  + S+   PD+   N L+    +R       +V ++      + T  T+ +++
Sbjct: 79  DLDAALRLVGSSPRPPDVPLANRLVRDLCRRGRPADAARVVEA---CGPEATAATYGALV 135

Query: 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 258
             Y +A L   A  V   M A     S   +  +I        V+ A  + D +   G  
Sbjct: 136 DGYCRAGLLEDARRVVGGMPAHVQASSAYAHNPLIHALCERGRVADALVVLDGMLCRGCA 195

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
             V T N +L+A C      +A  L +     G  P++ TY ++  A  +    +  ++L
Sbjct: 196 PDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQAREL 255

Query: 319 LKRMEQNGIVPNKRFFLEALETFSS 343
           L  +   G  PN   +   L+ F S
Sbjct: 256 LNSLPSRGCKPNTVNYNTVLKGFCS 280


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 146/344 (42%), Gaps = 58/344 (16%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           ++ ++ DT  YSK+I  +    +   A  LF EM+  G  PD   Y  LI +      KA
Sbjct: 450 RKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFC----KA 505

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             + +A   F++M+ +  C P +VTY  L+ A  +A+ V Q N +F  + ++   P+  T
Sbjct: 506 GLIEQAQWLFEEMRSVG-CSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVT 564

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQ----------CK------PDIITFNLLIDSYG 167
           Y  ++D   K G I +   V +++              C+      P+++T+  L+D   
Sbjct: 565 YGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLC 624

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
           K    D   ++  +++ S  +P    ++++I  + KA     A+ VF +MT   Y PS  
Sbjct: 625 KAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVH 684

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGK-DMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           TY  +I                D + K G+ D+ +  L+ ML+  C              
Sbjct: 685 TYTSLI----------------DRMFKDGRLDLAMKVLSQMLKDSC-------------- 714

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                 TP+  TY  +     +    E   KLL  ME+ G  PN
Sbjct: 715 ------TPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPN 752



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 121/277 (43%), Gaps = 21/277 (7%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI    K G    A WLF EMR+ GC P    Y ALI A+L    KAK + +A
Sbjct: 491 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYL----KAKQVPQA 546

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL----------------H 113
              F +M     C+PN VTY  L+    +A N+ +   ++ +L                 
Sbjct: 547 NDIFHRMVDAG-CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCED 605

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
              LAP++ TY  ++D   K   +     +L  M S+ C+P+ I ++ LID + K    D
Sbjct: 606 RHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKID 665

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
             ++VF  +      P++ T+ S+I    K      A  V  +M     TP+ +TY  +I
Sbjct: 666 SAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMI 725

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
                     +A ++   + + G    V T  A+++ 
Sbjct: 726 DGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDG 762



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 121/276 (43%), Gaps = 18/276 (6%)

Query: 73  FQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           FQ +K M R    P+  TY+ ++     A  V++   LF+E+    + PD+YTY  ++D+
Sbjct: 442 FQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDS 501

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K G+I++ + +   M+S  C P ++T+  LI +Y K +   +   +F  ++ +  +P 
Sbjct: 502 FCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPN 561

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMK----------------YTPSFITYECIIT 234
             T+ +++    KA    KA  V+ K+                      P+ +TY  ++ 
Sbjct: 562 DVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVD 621

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
                  V  A E+ D +   G +      +A+++ +C  G    A  +F      G  P
Sbjct: 622 GLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLP 681

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              TY  L     K    +L  K+L +M ++   PN
Sbjct: 682 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 717



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 82/380 (21%), Positives = 152/380 (40%), Gaps = 69/380 (18%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I +   Y  L++   KK Q      + + M   GC P+PS++N+L+ ++ + +D A A  
Sbjct: 308 IPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYA-- 365

Query: 68  KALGYFQKMKGMERC--KPNIVTYNILLRA-CAQAR------------------------ 100
                ++ +  M  C   P  V YNI + + C Q +                        
Sbjct: 366 -----YKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVL 420

Query: 101 ---NV-------------DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
              NV             D+   L KE+      PD  TY+ V+        +++   + 
Sbjct: 421 NKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLF 480

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             MK     PD+ T+ +LIDS+ K    ++ + +F+ +      PT+ T+ ++I  Y KA
Sbjct: 481 QEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKA 540

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
           +   +A  +F +M      P+ +TY  ++       N+S+A E++ +L        + T 
Sbjct: 541 KQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL--------IGTS 592

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           ++            ++D  F       + P+  TY  L     KA+  +   +LL  M  
Sbjct: 593 DS-----------ADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLS 641

Query: 325 NGIVPNKRFFLEALETFSSS 344
           +G  PN   +   ++ F  +
Sbjct: 642 SGCEPNHIVYDALIDGFCKA 661



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 152/402 (37%), Gaps = 78/402 (19%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           ++Q  Y      Y  L   +G  G+ R A  L  E+       D  V   L+   +    
Sbjct: 130 ERQVGYSHTGACYDALADALGFDGRARDAERLLREIGEE----DREVLGRLLNVLVRRCC 185

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           +     +AL    ++K     +P+ VTYN L++  + A  VD    + KE+ ES    D 
Sbjct: 186 RGGMWNEALEELGRLKDFGY-RPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDR 244

Query: 122 YTYNGVMDAYGKNG-------MIK-------------------------EMESVLSRMKS 149
           +T      A  K G       MI+                         E  S L RM+ 
Sbjct: 245 FTVGCFAHALCKEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRC 304

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
           N C P+++T+  L+  + K++     +++   +M     P    FNS++ +Y   +    
Sbjct: 305 NSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAY 364

Query: 210 AEYVFQKMTAMKYTPSFITYECII-------------------TMYGY-----C----DN 241
           A  +  +MT     P ++ Y   I                    +YG      C     N
Sbjct: 365 AYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVN 424

Query: 242 VSR-AREI-----FDELSKLGKDM-------KVSTLNAMLEAYCMNGLPTEADLLFENSH 288
           V+  AR +     FD+  +L K+M         ST + ++   C      +A LLF+   
Sbjct: 425 VANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMK 484

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +GVTPD  TY +L  ++ KA + E  Q L + M   G  P 
Sbjct: 485 MVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPT 526



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 99/238 (41%), Gaps = 48/238 (20%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL---AKAL 70
           Y+ LI    K  Q   A  +F  M ++GCRP+   Y AL+       + +KA    AK +
Sbjct: 530 YTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLI 589

Query: 71  G-------------------------YFQKMKGMER------------------CKPNIV 87
           G                         Y   + G+ +                  C+PN +
Sbjct: 590 GTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHI 649

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
            Y+ L+    +A  +D    +F ++ +    P ++TY  ++D   K+G +     VLS+M
Sbjct: 650 VYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQM 709

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKA 204
             + C P+++T+  +ID   +    +K  ++  SLM  K   P + T+ ++I   G++
Sbjct: 710 LKDSCTPNVVTYTAMIDGLCRIGESEKALKLL-SLMEEKGCSPNVVTYTALIDGLGQS 766



 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y  LI    K G+   A  +F +M   G  P    Y +LI        K   L  A+  
Sbjct: 650 VYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF----KDGRLDLAMKV 705

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +M   + C PN+VTY  ++    +    ++   L   + E   +P++ TY  ++D  G
Sbjct: 706 LSQML-KDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLG 764

Query: 133 KN 134
           ++
Sbjct: 765 QS 766


>gi|255661214|gb|ACU25776.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 426

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 138/297 (46%), Gaps = 5/297 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS+++ SG  PD   YN++I        KA+   +
Sbjct: 42  GDLVLYSNLIELSRKLCDYSKAISIFSKLKRSGITPDLVAYNSMINVF----GKARLFRE 97

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +M+ +    PN V+Y+ LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 98  ARSLISEMR-VAGVMPNTVSYSTLLTMYVENKRFREALSVFAEMREIKCLLDLTTCNIMI 156

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+  M KE + +   M+    +P+++++N L+  YG  + F +   +F+ +      
Sbjct: 157 DVYGQLDMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIV 216

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+N+M++ YGK     KA  + Q+M      P+ ITY  II+++G    + RA  +
Sbjct: 217 QNVVTYNTMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAML 276

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           F +L   G ++       M+ AY   GL   A  L          P  +   +L  A
Sbjct: 277 FQKLRVSGIEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPNNIPRDTAIHILAGA 333



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 151/320 (47%), Gaps = 5/320 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI   GK+G    A+    +M       D  +Y+ LI       D +KA++  
Sbjct: 8   DRYTYSTLITHFGKEGLFDGALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAIS-- 65

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F K+K      P++V YN ++    +AR   +  +L  E+  + + P+  +Y+ ++ 
Sbjct: 66  --IFSKLK-RSGITPDLVAYNSMINVFGKARLFREARSLISEMRVAGVMPNTVSYSTLLT 122

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y +N   +E  SV + M+  +C  D+ T N++ID YG+     + +++F  +     +P
Sbjct: 123 MYVENKRFREALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWGMRKMGIEP 182

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG      +A  + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIVQNVVTYNTMMMIYGKTLEHEKANNLI 242

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+   G +    T + ++  +   G    A +LF+     G+  D   Y+ +  AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRVSGIEIDQVLYQTMIVAYERA 302

Query: 310 NMKELVQKLLKRMEQNGIVP 329
            +    ++LL  +++   +P
Sbjct: 303 GLVAHAKRLLHELKRPNNIP 322



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 107/214 (50%)

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           L+PD YTY+ ++  +GK G+     S L +M+ ++   D++ ++ LI+   K   + K  
Sbjct: 5   LSPDRYTYSTLITHFGKEGLFDGALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAI 64

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
            +F  L  S   P L  +NSMI  +GKARL  +A  +  +M      P+ ++Y  ++TMY
Sbjct: 65  SIFSKLKRSGITPDLVAYNSMINVFGKARLFREARSLISEMRVAGVMPNTVSYSTLLTMY 124

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                   A  +F E+ ++   + ++T N M++ Y    +  EAD LF     MG+ P+ 
Sbjct: 125 VENKRFREALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWGMRKMGIEPNV 184

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +Y  L + Y  A +      L + M++  IV N
Sbjct: 185 VSYNTLLRVYGDAELFGEAIHLFRLMQRKDIVQN 218



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 142/315 (45%), Gaps = 9/315 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L+ +  +  + R A+ +F+EMR   C  D +  N +I  +    D AK   K     
Sbjct: 117 YSTLLTMYVENKRFREALSVFAEMREIKCLLDLTTCNIMIDVYGQL-DMAKEADKLFWGM 175

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KM G+E   PN+V+YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK
Sbjct: 176 RKM-GIE---PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIVQNVVTYNTMMMIYGK 231

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
               ++  +++  M++   +P+ IT++ +I  +GK    D+   +F+ L  S  +     
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRVSGIEIDQVL 291

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + +MI+ Y +A L   A+ +  ++      P+ I  +  I +      +  A  +F +  
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHELK----RPNNIPRDTAIHILAGAGRIEEATWVFRQAI 347

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G+   ++    M+  +      T    +FE    +G  PDS+   ++  AY K +  E
Sbjct: 348 DAGEVKDITVFERMISLFSKYKKYTNVVEVFEKMRGLGYFPDSNVIAVVLNAYGKLHKFE 407

Query: 314 LVQKLLKRMEQNGIV 328
               +   M+  G V
Sbjct: 408 NANGVYMEMQDEGCV 422


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 147/323 (45%), Gaps = 11/323 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD--KAKALA 67
           +T  Y+ L+  + + G+ R A  L   M   GC PD   Y  +I  + H  +  K   L 
Sbjct: 109 NTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLV 168

Query: 68  KALGYFQKMKGMERCKPNIVTY-NILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           K +    ++KG+   KPN+ TY +I+L  C   + V+    L +E+ +  + PD   Y  
Sbjct: 169 KEM----QLKGL---KPNLYTYSSIILLLCKSGKVVEGEKVL-REMMKRGVFPDHVIYTT 220

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++D + K G  +    + S M++ +  PD I F+ LI          + +++F  ++   
Sbjct: 221 LIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKG 280

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P   T+ ++I  Y K     KA ++  +M  +  TP+ +TY  +         +  A 
Sbjct: 281 FEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTAN 340

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+  E+ + G  + +ST N ++   C  G   +A  L E     G+ PD+ TY  L  AY
Sbjct: 341 ELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAY 400

Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
            K       ++LL+ M   G+ P
Sbjct: 401 YKTGEMVKARELLREMLDRGLQP 423



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 140/317 (44%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I ++ K G+      +  EM   G  PD  +Y  LI        K      A   F
Sbjct: 183 YSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFC----KLGNTQAAYKLF 238

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+  E   P+ + ++ L+   + +  V + + LF E+ +    PD  TY  ++D Y K
Sbjct: 239 SEMEARE-IVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCK 297

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +K+   + ++M      P+++T+  L D   K    D   ++   +     +  + T
Sbjct: 298 LGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNIST 357

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N+++    KA    +A  + ++M      P  ITY  ++  Y     + +ARE+  E+ 
Sbjct: 358 YNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREML 417

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V T N ++   CM+G   + + L +     G+ P+++TY  + K Y   N   
Sbjct: 418 DRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMR 477

Query: 314 LVQKLLKRMEQNGIVPN 330
           +  ++ + M   G+VP+
Sbjct: 478 ISTEIYRGMCAQGVVPD 494



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 139/330 (42%), Gaps = 5/330 (1%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R  + D+  +S LI  +   G+   A  LF+EM   G  PD   Y ALI  +    +  K
Sbjct: 244 REIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKK 303

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           A      +           PN+VTY  L     ++  +D  N L  E+    L  +I TY
Sbjct: 304 AF-----FLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTY 358

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N +++   K G I +   ++  MK     PD IT+  L+D+Y K     K  ++ + ++ 
Sbjct: 359 NTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLD 418

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
              +PT+ TFN ++     +      E + + M      P+  TY  I+  Y   +N+  
Sbjct: 419 RGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRI 478

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           + EI+  +   G     +T N +++ +C      EA  L +          +S+Y  L K
Sbjct: 479 STEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIK 538

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            + K       ++L + M + G+V +   +
Sbjct: 539 GFFKRKKLLEARQLFEEMRREGLVASAEIY 568



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 108/240 (45%), Gaps = 9/240 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ ++  + K G    A+ L  EM+ +G  PD   Y  L+ A+  T +    + KA    
Sbjct: 358 YNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGE----MVKARELL 413

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           ++M  +G++   P +VT+N+L+     +  ++    L K + E  + P+  TYN +M  Y
Sbjct: 414 REMLDRGLQ---PTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQY 470

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
                ++    +   M +    PD  T+N+LI  + K +   +   + K ++  +   T 
Sbjct: 471 CIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTA 530

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            ++N++I  + K +   +A  +F++M       S   Y   + M     N+    E+ DE
Sbjct: 531 SSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDE 590


>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
 gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
          Length = 720

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 151/333 (45%), Gaps = 13/333 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMW--LFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +Q  + +D   YS +I  + +  +  + +   L+ E+ +     D  + N +I       
Sbjct: 236 RQDGFQSDFINYSLIIQSLTRTNKIDIPLLQKLYEEIESDKIELDGLLLNDIILGFAKAG 295

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           D  +AL     YF  M       P   T+  ++ A       ++  A+F+E+ E  L P 
Sbjct: 296 DPNRAL-----YFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPR 350

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           I  +N ++  Y + G +KE ES++S M+ +   PD  T+ LL+D+Y     ++    + K
Sbjct: 351 IKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLK 410

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT---PSFITYECIITMYG 237
            +     +P    F+ ++ +Y   R +G+ +  F+ +  MK +   P    Y  +I  +G
Sbjct: 411 QMEARNVQPNTFIFSRILASY---RDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFG 467

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
             + +  A E +D +   G +  V T N +++ +  +G    A  LFE     G  P  +
Sbjct: 468 KFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQERGYLPCPT 527

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           TY ++  +  +    + V+ LL +M+  G++PN
Sbjct: 528 TYNIMINSLGEQEKWDEVKILLGKMQSQGLLPN 560



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 164/352 (46%), Gaps = 21/352 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---HLHTRDKAKAL 66
           D  + + +I    K G    A++  S ++ SG  P  S + A+I+A   H  T ++A+A+
Sbjct: 280 DGLLLNDIILGFAKAGDPNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRT-EEAEAI 338

Query: 67  AKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
                 F++MK  G+   KP I  +N LL+  A+  ++ +  ++  E+ +S L+PD +TY
Sbjct: 339 ------FEEMKEGGL---KPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTY 389

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
             ++DAY   G  +    +L +M++   +P+   F+ ++ SY  R  + K  +V + + +
Sbjct: 390 GLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKN 449

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY---GYCDN 241
           S  KP    +N MI  +GK      A   + +M +    P  +T+  +I  +   GY D 
Sbjct: 450 SNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHD- 508

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
             RA E+F+E+ + G     +T N M+ +        E  +L     + G+ P+  TY  
Sbjct: 509 --RAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTT 566

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSA 353
           L   Y  +         L+ M+  G+ P+   +   +  F+      Q+ +A
Sbjct: 567 LVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAVNA 618



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 146/320 (45%), Gaps = 5/320 (1%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T  +  +I+ +G  G+T  A  +F EM+  G +P    +NAL+  +     +  +L +A 
Sbjct: 316 TSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYA----RKGSLKEAE 371

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
               +M+      P+  TY +L+ A A     +    L K++    + P+ + ++ ++ +
Sbjct: 372 SIISEMEK-SGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILAS 430

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           Y   G  ++   VL  MK++  KPD   +N++ID++GK    D   + +  ++    +P 
Sbjct: 431 YRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPD 490

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           + T+N++I  + K     +A  +F++M    Y P   TY  +I   G  +     + +  
Sbjct: 491 VVTWNTLIDCHRKHGYHDRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLG 550

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           ++   G    V T   +++ Y  +G   +A    E   + G+ P ++ Y  L  A+ +  
Sbjct: 551 KMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRG 610

Query: 311 MKELVQKLLKRMEQNGIVPN 330
           + E      + M  +G+ P+
Sbjct: 611 LSEQAVNAYRVMISDGLRPS 630



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 143/321 (44%), Gaps = 13/321 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT--RDKAKALAKALG 71
           ++ L+    +KG  + A  + SEM  SG  PD   Y  L+ A+ +    + A+ L     
Sbjct: 354 FNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHL----- 408

Query: 72  YFQKMKGME--RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               +K ME    +PN   ++ +L +        +   + +E+  S + PD + YN ++D
Sbjct: 409 ----LKQMEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMID 464

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +GK   +        RM S   +PD++T+N LID + K    D+  ++F+ +      P
Sbjct: 465 TFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQERGYLP 524

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T+N MI + G+     + + +  KM +    P+ +TY  ++ +YG+    + A +  
Sbjct: 525 CPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCL 584

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           + +   G     +  NA++ A+   GL  +A   +    + G+ P       L  A+ + 
Sbjct: 585 EAMKSAGLKPSATMYNALINAFAQRGLSEQAVNAYRVMISDGLRPSLLALNSLINAFGED 644

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
                   +L+ M++N + P+
Sbjct: 645 RRDIEAFSILQYMKENDVKPD 665



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 11/246 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT--RDKAKALA 67
           D   Y+ +I   GK      AM  +  M + G  PD   +N LI  H      D+A  L 
Sbjct: 455 DRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAEL- 513

Query: 68  KALGYFQKMKGMERCK-PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
                F++M+  ER   P   TYNI++ +  +    D+V  L  ++    L P++ TY  
Sbjct: 514 -----FEEMQ--ERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTT 566

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++D YG +G   +    L  MKS   KP    +N LI+++ +R   ++    ++ ++   
Sbjct: 567 LVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAVNAYRVMISDG 626

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +P+L   NS+I  +G+ R   +A  + Q M      P  +TY  ++      D   +  
Sbjct: 627 LRPSLLALNSLINAFGEDRRDIEAFSILQYMKENDVKPDVVTYTTLMKALIRVDKFDKVP 686

Query: 247 EIFDEL 252
            +++E+
Sbjct: 687 AVYEEM 692



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/320 (20%), Positives = 130/320 (40%), Gaps = 12/320 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +YS LI  +G+  +   A  L  +   +     P  YNALI A     D    L KAL  
Sbjct: 181 LYSILIHALGRSEKLYEAFILSQKQTLT-----PLTYNALIGACARNND----LEKALNL 231

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVD--QVNALFKELHESILAPDIYTYNGVMDA 130
             +M+  +  + + + Y++++++  +   +D   +  L++E+    +  D    N ++  
Sbjct: 232 MSRMR-QDGFQSDFINYSLIIQSLTRTNKIDIPLLQKLYEEIESDKIELDGLLLNDIILG 290

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           + K G        LS ++++   P   TF  +I + G     ++ E +F+ +     KP 
Sbjct: 291 FAKAGDPNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPR 350

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           +  FN+++  Y +     +AE +  +M     +P   TY  ++  Y        AR +  
Sbjct: 351 IKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLK 410

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           ++            + +L +Y   G   +   +     N  V PD   Y ++   + K N
Sbjct: 411 QMEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFN 470

Query: 311 MKELVQKLLKRMEQNGIVPN 330
             +   +   RM   GI P+
Sbjct: 471 CLDHAMETYDRMLSEGIEPD 490


>gi|410110127|gb|AFV61143.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           origanoides]
          Length = 408

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 142/302 (47%), Gaps = 5/302 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF EMR     PD   Y+ LIT H     K      AL + QKM+  +R   ++V Y+ L
Sbjct: 2   LFDEMRQRALSPDRYTYSTLIT-HF---GKEGLFDAALSWLQKME-QDRVPGDLVLYSNL 56

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  S++S MK+   
Sbjct: 57  IELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGV 116

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+  +  +A+ 
Sbjct: 117 MPNTTSYSTLLXMYVENKKFLEALSVFSEMREIKCLLDLXTCNIMIDVYGQLGMAKEADK 176

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T N+M+  Y 
Sbjct: 177 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 236

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
                 +A+ L +   + G+ P+S TY  +   + K    +    L +++  +G+  ++ 
Sbjct: 237 KTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQI 296

Query: 333 FF 334
            F
Sbjct: 297 LF 298



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 154/327 (47%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 7   RQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 66

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  
Sbjct: 67  SKAIS----IFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 121

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +
Sbjct: 122 SYSTLLXMYVENKKFLEALSVFSEMREIKCLLDLXTCNIMIDVYGQLGMAKEADKLFWGM 181

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG     
Sbjct: 182 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 241

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + GV  D   ++ +
Sbjct: 242 EKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTM 301

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  +++   +P
Sbjct: 302 IVAYERAGLVAHAKRLLHELKRPDNIP 328



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 141/340 (41%), Gaps = 42/340 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEM+ +G  P+ + Y+ L+  ++     
Sbjct: 77  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLXMYVEN--- 133

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 134 -KKFLEALSVFSEMREIKCLLDLXTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 192

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 193 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 252

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           S   +P+ IT++ +I  +GK    D+   +F+ L  S  +     F +MI+ Y +A L  
Sbjct: 253 SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVA 312

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++      P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 313 HAKRLLHELK----RPDNIPRDTAIHILAGAGRIEEATYVFRQAVDAGEVKDITVFERMI 368

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
                    +    +F+    +G  PDS+   ++  AY K
Sbjct: 369 HLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNAYGK 408



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 35/259 (13%)

Query: 107 ALFKELHESILAPDIYTYNGVMDAYGKNGM-------IKEME------------------ 141
            LF E+ +  L+PD YTY+ ++  +GK G+       +++ME                  
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60

Query: 142 ----------SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
                     S+ SR+K +   PD++ +N +I+ +GK + F +   +   +  +   P  
Sbjct: 61  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 120

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            ++++++  Y + +   +A  VF +M  +K      T   +I +YG       A ++F  
Sbjct: 121 TSYSTLLXMYVENKKFLEALSVFSEMREIKCLLDLXTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + K+G +  V + N +L  Y    L  EA  LF       +  +  TY  +   Y K   
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLE 240

Query: 312 KELVQKLLKRMEQNGIVPN 330
            E    L++ M+  GI PN
Sbjct: 241 HEKANNLIQEMQSRGIEPN 259


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 143/330 (43%), Gaps = 13/330 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R +I D   Y+ +I  + K G+       F EMRN G  PD   Y ALI   +    KA
Sbjct: 317 ERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFM----KA 372

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           K + KA   +++M        + VTYNI+L    +A  V +  A F  + E      + T
Sbjct: 373 KMIPKAHRVYRQML-QSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVT 431

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ +MD +   G +     +  RM    C+P+++++N++I    +     K    F+ L+
Sbjct: 432 YSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLL 491

Query: 184 HSKEKPTLPTFNSMIINYGKARLQ--GKAEYVFQKMTAMKYTPSFITYECIITMYGYC-- 239
             +  P + TFNS +    + RL   G    +F+ M +   +P+  +Y   I M G C  
Sbjct: 492 QRRLCPDVYTFNSFLHGLCQ-RLDTVGDGVELFESMVSQGTSPNLHSYS--ILMDGICRA 548

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             +    EIF E+   G    V   N ++   C+ G   EA  +F         PD+ +Y
Sbjct: 549 GGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRS-APDAWSY 607

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             L  A ++    E  + L   M+  G  P
Sbjct: 608 WSLLDALSRCERMEEARLLSFHMKLQGCAP 637



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 144/326 (44%), Gaps = 20/326 (6%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + K G+   A  +F +M  +GCRPD  VY ALI+       K   L +AL Y 
Sbjct: 149 YTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLA----KIGKLDEALVYL 204

Query: 74  QKM------KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI--YTYN 125
            +M      +G+E   P++V +N+++R    + N++   A F EL +S+   D+  +T+N
Sbjct: 205 NQMVENGCARGVE---PDVVIHNLVIRQLCASGNLEDALAYFDELDDSL---DLTHFTFN 258

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++ A  K    +E  + + +M   +C P + T+  L+D + K    D+     K  +  
Sbjct: 259 PLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVER 318

Query: 186 KEKPTLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
              P   T+ S+I    K  R++   E  F +M    Y P  +TY  +I  +     + +
Sbjct: 319 GFIPDAVTYTSIIDGLCKLGRVEEGCER-FHEMRNRGYEPDAVTYAALIDGFMKAKMIPK 377

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  ++ ++ + G  +   T N +L+  C  G   EA   F      G      TY  L  
Sbjct: 378 AHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMD 437

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
            +          +L +RM   G  PN
Sbjct: 438 GFCSEGNVSAAVELFRRMLDRGCEPN 463



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/397 (21%), Positives = 156/397 (39%), Gaps = 75/397 (18%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGC----RPDPSVYNALI------------ 53
           D  +Y+ LI+ + K G+   A+   ++M  +GC     PD  ++N +I            
Sbjct: 180 DAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDA 239

Query: 54  TAHLHTRD------------------KAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95
            A+    D                  KA+   +A+ + +KM    RC P + TY  L+  
Sbjct: 240 LAYFDELDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSE-RRCFPTLFTYTSLVDG 298

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
             +   +D+     KE  E    PD  TY  ++D   K G ++E       M++   +PD
Sbjct: 299 FLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPD 358

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
            +T+  LID + K +   K  +V++ ++ S    +  T+N ++    KA    +A   F 
Sbjct: 359 AVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFL 418

Query: 216 KMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYC- 272
            M       + +TY  +  M G+C   NVS A E+F  +   G +  + + N ++   C 
Sbjct: 419 AMEERGCVATVVTYSAL--MDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCR 476

Query: 273 -----------------------------MNGLPTEADL------LFENSHNMGVTPDSS 297
                                        ++GL    D       LFE+  + G +P+  
Sbjct: 477 AGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLH 536

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           +Y +L     +A   E+  ++   M   G+ P+   F
Sbjct: 537 SYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVF 573



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 97/435 (22%), Positives = 160/435 (36%), Gaps = 89/435 (20%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS--------------------------- 40
           + DT + + L+  + K GQ   AM L  EM  S                           
Sbjct: 6   LVDTRVCTALLNGLCKTGQLDRAMLLLDEMPCSPDMVAFTVVINGLCREKRLDEAFSVLE 65

Query: 41  -----GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME--RCKPNIVTYNILL 93
                GC PD   YN  I        KA+ +  A   FQ +K M+  +C P  VTY  L+
Sbjct: 66  RAVRAGCEPDYVTYNVFIDGLC----KAERVDDA---FQLLKKMDEKKCLPTTVTYTALV 118

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
               +A  +D+  A+ +++ E   +P + TY  V+D   K G ++E   +   M  N C+
Sbjct: 119 DGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCR 178

Query: 154 PDIITFNLLIDSYGKRQAFDK----MEQVFKSLMHSKEKPTLP----------------- 192
           PD   +  LI    K    D+    + Q+ ++      +P +                  
Sbjct: 179 PDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLED 238

Query: 193 -----------------TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
                            TFN ++    KA    +A    +KM+  +  P+  TY  ++  
Sbjct: 239 ALAYFDELDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDG 298

Query: 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           +     +  A     E  + G      T  ++++  C  G   E    F    N G  PD
Sbjct: 299 FLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPD 358

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK---RFFLEAL-------ETFSSSL 345
           + TY  L   + KA M     ++ ++M Q+G V +       L+ L       E +++ L
Sbjct: 359 AVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFL 418

Query: 346 AGSQSGSAKTDLTRS 360
           A  + G   T +T S
Sbjct: 419 AMEERGCVATVVTYS 433



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 7/197 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R  +A    YS L+     +G    A+ LF  M + GC P+   YN +I        +
Sbjct: 421 EERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLC----R 476

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDI 121
           A  LAKA  YF+K+     C P++ T+N  L   C +   V     LF+ +     +P++
Sbjct: 477 AGKLAKAYFYFEKLLQRRLC-PDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNL 535

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           ++Y+ +MD   + G ++    +   M S    PD++ FN LI         D+  +VF+ 
Sbjct: 536 HSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRE 595

Query: 182 LMHSKEKPTLPTFNSMI 198
           L   +  P   ++ S++
Sbjct: 596 L-ERRSAPDAWSYWSLL 611


>gi|15238925|ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g42310, mitochondrial; Flags: Precursor
 gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana]
 gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 709

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 157/333 (47%), Gaps = 13/333 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGK--KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +Q  Y +D   YS +I  + +  K  + + + L+ E+       D  + N +I     + 
Sbjct: 224 RQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSG 283

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           D +KAL + LG  Q   G+      +V+   ++ A A +    +  ALF+EL +S + P 
Sbjct: 284 DPSKAL-QLLGMAQA-TGLSAKTATLVS---IISALADSGRTLEAEALFEELRQSGIKPR 338

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
              YN ++  Y K G +K+ ES++S M+     PD  T++LLID+Y     ++    V K
Sbjct: 339 TRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLK 398

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYG 237
            +     +P    F+ ++  +   R +G+ +  FQ +  MK     P    Y  +I  +G
Sbjct: 399 EMEAGDVQPNSFVFSRLLAGF---RDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFG 455

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
             + +  A   FD +   G +    T N +++ +C +G    A+ +FE     G  P ++
Sbjct: 456 KFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCAT 515

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           TY ++  +Y      + +++LL +M+  GI+PN
Sbjct: 516 TYNIMINSYGDQERWDDMKRLLGKMKSQGILPN 548



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 141/320 (44%), Gaps = 5/320 (1%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T  Y+ L+    K G  + A  + SEM   G  PD   Y+ LI A+++    A     A 
Sbjct: 339 TRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVN----AGRWESAR 394

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
              ++M+  +  +PN   ++ LL          +   + KE+    + PD   YN V+D 
Sbjct: 395 IVLKEMEAGD-VQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDT 453

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           +GK   +    +   RM S   +PD +T+N LID + K       E++F+++      P 
Sbjct: 454 FGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPC 513

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             T+N MI +YG        + +  KM +    P+ +T+  ++ +YG     + A E  +
Sbjct: 514 ATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLE 573

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+  +G     +  NA++ AY   GL  +A   F    + G+ P       L  A+ +  
Sbjct: 574 EMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDR 633

Query: 311 MKELVQKLLKRMEQNGIVPN 330
                  +L+ M++NG+ P+
Sbjct: 634 RDAEAFAVLQYMKENGVKPD 653



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 146/330 (44%), Gaps = 5/330 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   YS LI      G+   A  +  EM     +P+  V++ L+      RD+
Sbjct: 366 EKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGF---RDR 422

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +   K     ++MK +   KP+   YN+++    +   +D     F  +    + PD  
Sbjct: 423 GE-WQKTFQVLKEMKSIG-VKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRV 480

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           T+N ++D + K+G     E +   M+   C P   T+N++I+SYG ++ +D M+++   +
Sbjct: 481 TWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKM 540

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 P + T  +++  YGK+     A    ++M ++   PS   Y  +I  Y      
Sbjct: 541 KSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLS 600

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A   F  ++  G    +  LN+++ A+  +    EA  + +     GV PD  TY  L
Sbjct: 601 EQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTL 660

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
            KA  + +  + V  + + M  +G  P+++
Sbjct: 661 MKALIRVDKFQKVPVVYEEMIMSGCKPDRK 690



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 114/255 (44%), Gaps = 7/255 (2%)

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y+IL+ A  ++  + +    F    +  L P   TYN ++ A  +N  I++  +++++M+
Sbjct: 170 YSILIHALGRSEKLYEA---FLLSQKQTLTP--LTYNALIGACARNNDIEKALNLIAKMR 224

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDK--MEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
            +  + D + ++L+I S  +    D   + +++K +   K +  +   N +I+ + K+  
Sbjct: 225 QDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGD 284

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
             KA  +     A   +    T   II+          A  +F+EL + G   +    NA
Sbjct: 285 PSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNA 344

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           +L+ Y   G   +A+ +       GV+PD  TY LL  AY  A   E  + +LK ME   
Sbjct: 345 LLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGD 404

Query: 327 IVPNKRFFLEALETF 341
           + PN   F   L  F
Sbjct: 405 VQPNSFVFSRLLAGF 419


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 142/322 (44%), Gaps = 5/322 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I+   K  +   A  +   M+  G  PD   YN LI  +   R +     + 
Sbjct: 145 DVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILI-GNFCGRGRLDLALRV 203

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +    K    + CKP ++TY IL+ A      +D+   L  E+    L PD YTYN V++
Sbjct: 204 MDQLLK----DNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVN 259

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K GM+      LSR+  N C   + T+N+L+        ++  E++   ++    +P
Sbjct: 260 GMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEP 319

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T++++I    +     +A+ V + M      P   +Y+ +I+       V  A E  
Sbjct: 320 NPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFL 379

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D++   G    + + N++L + C NG   EA  +FE    +G  P++ +Y  L+ A   +
Sbjct: 380 DDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSS 439

Query: 310 NMKELVQKLLKRMEQNGIVPNK 331
             K     ++  M  NGI P++
Sbjct: 440 GDKIRALGMILEMLSNGIDPDE 461



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 133/319 (41%), Gaps = 6/319 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI     +G    AM L  EM + G RPD   YN ++        K   L +A  + 
Sbjct: 219 YTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMC----KEGMLDRAFEFL 274

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++     C   + TYNILLR        +    L  ++      P+  TY+ ++ A  +
Sbjct: 275 SRISK-NGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCR 333

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G I E ++VL  MK     PD  +++ LI +  +    D   +    ++     P + +
Sbjct: 334 DGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILS 393

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS++ +  K     +A  +F+K+  +   P+  +Y  +        +  RA  +  E+ 
Sbjct: 394 YNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEML 453

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEA-DLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
             G D    T N+++   C +GL  +A +LL +   +    P   +Y  +     K    
Sbjct: 454 SNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGLCKVQRI 513

Query: 313 ELVQKLLKRMEQNGIVPNK 331
               ++L  M   G +PN+
Sbjct: 514 IDAIEVLAAMVNEGCLPNE 532



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 109/250 (43%), Gaps = 5/250 (2%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           KP+++    L++     + +++   +  E+ E    PD++ YN V+  + K   +     
Sbjct: 109 KPDVILCTKLIKGFFNMKKIEKAIQVM-EILEKHGKPDVFAYNAVISGFCKADRVDHASK 167

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           VL RMK    +PD++T+N+LI ++  R   D   +V   L+    KPT+ T+  +I    
Sbjct: 168 VLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATI 227

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMK 260
                 +A  +  +M +    P   TY  ++   G C    + RA E    +SK G    
Sbjct: 228 TQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVN--GMCKEGMLDRAFEFLSRISKNGCVAG 285

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           VST N +L      G     + L  +    G  P+  TY  L  A  +    +  + +LK
Sbjct: 286 VSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLK 345

Query: 321 RMEQNGIVPN 330
            M++  + P+
Sbjct: 346 VMKEKALAPD 355



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           + K++    D   Y  LI+ + ++G+  LA+    +M + G  PD   YN+++ A L   
Sbjct: 346 VMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSIL-ASLCKN 404

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
             A    +AL  F+K+ G   C PN  +YN L  A   + +  +   +  E+  + + PD
Sbjct: 405 GNAD---EALNIFEKL-GEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPD 460

Query: 121 IYTYNGVMDAYGKNGMIKE-MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
             TYN ++    ++G++ + +E ++   +S +C+P +I++N ++    K Q      +V 
Sbjct: 461 EITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVL 520

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKA 204
            ++++    P   T+  +I   G A
Sbjct: 521 AAMVNEGCLPNETTYTLLIQGIGFA 545



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 111/262 (42%), Gaps = 31/262 (11%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKA 65
           +A    Y+ L+  +  +G+      L S+M   GC P+P  Y+ LITA       D+AK 
Sbjct: 283 VAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKN 342

Query: 66  LAKAL--------GYFQKMKGMERCK--------------------PNIVTYNILLRACA 97
           + K +        GY         C+                    P+I++YN +L +  
Sbjct: 343 VLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLC 402

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           +  N D+   +F++L E    P+  +YN +  A   +G       ++  M SN   PD I
Sbjct: 403 KNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEI 462

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           T+N LI    +    D+  ++   +  S++ +PT+ ++N++++   K +    A  V   
Sbjct: 463 TYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAA 522

Query: 217 MTAMKYTPSFITYECIITMYGY 238
           M      P+  TY  +I   G+
Sbjct: 523 MVNEGCLPNETTYTLLIQGIGF 544



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 6/127 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           + G Y+ L   +   G    A+ +  EM ++G  PD   YN+LI+         +A+   
Sbjct: 425 NAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELL 484

Query: 70  LGYFQKMKGMERCKPNIVTYN-ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           +  F+     E+C+P +++YN +LL  C   R +D +  L   ++E  L P+  TY  ++
Sbjct: 485 VDMFES----EKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCL-PNETTYTLLI 539

Query: 129 DAYGKNG 135
              G  G
Sbjct: 540 QGIGFAG 546


>gi|302808035|ref|XP_002985712.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
 gi|300146621|gb|EFJ13290.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
          Length = 447

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 169/365 (46%), Gaps = 47/365 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  L+    K G+ + A+ L  EM+++G RP+  ++  +I         A  +++AL +F
Sbjct: 33  YGILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLC----TAGKVSQALLHF 88

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +++   E C PN+ TY+ L+ A  ++    +   L  E+ +   +P++ TYN ++D + K
Sbjct: 89  RRIG--EDCAPNVYTYSTLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRK 146

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              + E+  +L  M    C+ D+IT+ +++D + K  + D+  ++  +L    EK  + T
Sbjct: 147 LERLDEVLMLLKEMSQRGCRADVITYTMILDIFCKNNSIDEAYRLLNAL----EKRNVVT 202

Query: 194 FNSMI--INYGKARLQGKAEYVFQKMTAMKYTPSFI-----------------TYECIIT 234
           +NS+   ++  +     +A  + +KM      P+ +                  Y+ +++
Sbjct: 203 YNSLFTALSTAEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLS 262

Query: 235 MYGY-C--DNVS---------RAREIFDELSKLGK------DMKVSTLNAMLEAYCMNGL 276
           MY   C  D+VS          A   +D L  LG+       +   T+N ++  +C  G 
Sbjct: 263 MYSQGCKTDDVSYKILVVAFANAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGD 322

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
             EA  LF++ +  G  P + TY  L  A+ KA   +   KLL +M Q    PN   +  
Sbjct: 323 LHEAHQLFKSMYQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPNVITYNS 382

Query: 337 ALETF 341
            +++F
Sbjct: 383 IIKSF 387



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 132/320 (41%), Gaps = 11/320 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L+  + K GQ   A  L +EM   GC P+   YNALI        K + L + L   
Sbjct: 102 YSTLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGF----RKLERLDEVLMLL 157

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY-- 131
           ++M     C+ +++TY ++L    +  ++D+   L   L +     ++ TYN +  A   
Sbjct: 158 KEM-SQRGCRADVITYTMILDIFCKNNSIDEAYRLLNALEKR----NVVTYNSLFTALST 212

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            +     E  S+L +M     +P+ + +  ++    K    D+  QV  S+     K   
Sbjct: 213 AEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQGCKTDD 272

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            ++  +++ +  A     +  +  +M    Y     T   +I  +    ++  A ++F  
Sbjct: 273 VSYKILVVAFANAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAHQLFKS 332

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G      T N ++ A+C    P  A  L          P+  TY  + K++ +   
Sbjct: 333 MYQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPNVITYNSIIKSFCREQR 392

Query: 312 KELVQKLLKRMEQNGIVPNK 331
           +E  + + + M  NG  P++
Sbjct: 393 EEEARGIFQMMVDNGCFPDR 412



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 100/228 (43%), Gaps = 9/228 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R  +    +++ L    G +  T  A+ L  +M   G RP+   Y  ++         
Sbjct: 196 EKRNVVTYNSLFTALSTAEGDR--TTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRL 253

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA-RNVDQVNALFKELHESILAPDI 121
            +A    L  +      + CK + V+Y IL+ A A A R  D +  L + L    +  D 
Sbjct: 254 DEAYQVLLSMYS-----QGCKTDDVSYKILVVAFANAGRTYDSLELLGRMLGSGYIL-DT 307

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            T N V+  + K G + E   +   M      P  +T+N LI ++ K Q  D   ++   
Sbjct: 308 KTMNVVIHKFCKAGDLHEAHQLFKSMYQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQ 367

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
           ++ +  KP + T+NS+I ++ + + + +A  +FQ M      P  ++Y
Sbjct: 368 MIQADFKPNVITYNSIIKSFCREQREEEARGIFQMMVDNGCFPDRVSY 415



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 5/161 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  L+      G+T  ++ L   M  SG   D    N +I    H   KA  L +A   F
Sbjct: 275 YKILVVAFANAGRTYDSLELLGRMLGSGYILDTKTMNVVI----HKFCKAGDLHEAHQLF 330

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M       P+ VTYN L+ A  +A+  D    L  ++ ++   P++ TYN ++ ++ +
Sbjct: 331 KSMY-QRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPNVITYNSIIKSFCR 389

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
               +E   +   M  N C PD +++  L  S  +   +D+
Sbjct: 390 EQREEEARGIFQMMVDNGCFPDRVSYTTLKLSKNEAAIYDQ 430



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 91/198 (45%), Gaps = 15/198 (7%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH---TRDKAKALAKAL 70
           Y  ++ ++ K  +   A  +   M + GC+ D   Y  L+ A  +   T D  + L + L
Sbjct: 240 YRTVLLMLCKNSRLDEAYQVLLSMYSQGCKTDDVSYKILVVAFANAGRTYDSLELLGRML 299

Query: 71  G--YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           G  Y    K M          N+++    +A ++ + + LFK +++    P   TYN ++
Sbjct: 300 GSGYILDTKTM----------NVVIHKFCKAGDLHEAHQLFKSMYQRGSIPSNVTYNTLI 349

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            A+ K         +L +M     KP++IT+N +I S+ + Q  ++   +F+ ++ +   
Sbjct: 350 GAFCKAQQPDTAVKLLHQMIQADFKPNVITYNSIIKSFCREQREEEARGIFQMMVDNGCF 409

Query: 189 PTLPTFNSMIINYGKARL 206
           P   ++ ++ ++  +A +
Sbjct: 410 PDRVSYTTLKLSKNEAAI 427


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 148/331 (44%), Gaps = 12/331 (3%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           L AV+  K   ++A  +F EM  SG  P+   YN LI         A  L   L +F +M
Sbjct: 174 LDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFC----TAGNLEMGLXFFGEM 229

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +    C PN+VTYN ++ A  + R + +   L + +    L P++ +YN V++   + G 
Sbjct: 230 E-RNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQ 288

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           +KE   +L  M   +  PD +TFN LI+ Y     F +   +   ++ +   P + T+ +
Sbjct: 289 MKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTT 348

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           +I +  KA    +A     +M      P+  TY  +I  +     + +A +I  E+ + G
Sbjct: 349 LINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENG 408

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
               + T NA++  +C+ G   +A  L +     G  PD  +Y  +   + +    E   
Sbjct: 409 FTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAF 468

Query: 317 KLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
           +L   M   GI P+       + T+SS + G
Sbjct: 469 QLKVEMVAKGISPD-------VATYSSLIQG 492



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 135/301 (44%), Gaps = 4/301 (1%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ + +  ++ G  P    YNA++ A + T+   K    A G F++M       PN+ TY
Sbjct: 151 ALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKI---AEGIFKEMVE-SGVSPNVYTY 206

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           NIL+R    A N++     F E+  +   P++ TYN ++DAY K   I E   +L  M  
Sbjct: 207 NILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMAL 266

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
               P++I++N++I+   +     +  ++ + +   +  P   TFN++I  Y       +
Sbjct: 267 KGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQ 326

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  +  +M     +P+ +TY  +I       N++RA E  D++   G      T   +++
Sbjct: 327 ALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLID 386

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
            +   G   +A  + +     G TP   TY  L   +      E    LL+ M + G +P
Sbjct: 387 GFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIP 446

Query: 330 N 330
           +
Sbjct: 447 D 447



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 147/349 (42%), Gaps = 34/349 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL------- 66
           Y+ LI      G   + +  F EM  +GC P+   YN +I A+   R   +A        
Sbjct: 206 YNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMA 265

Query: 67  -----AKALGYFQKMKGM------------------ERCKPNIVTYNILLRACAQARNVD 103
                   + Y   + G+                   R  P+ VT+N L+       N  
Sbjct: 266 LKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFH 325

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           Q   L  E+ ++ L+P++ TY  ++++  K G +      L +M+     P+  T+  LI
Sbjct: 326 QALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLI 385

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           D + ++    +  Q+ K ++ +   PT+ T+N++I  +        A  + Q+M    + 
Sbjct: 386 DGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFI 445

Query: 224 PSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
           P  ++Y  II+  G+C N  + +A ++  E+   G    V+T +++++  C      E  
Sbjct: 446 PDVVSYSTIIS--GFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVC 503

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            LF+   ++G+ PD  TY  L  AY      +   +L   M Q G  P+
Sbjct: 504 DLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPD 552



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 154/377 (40%), Gaps = 55/377 (14%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R Y+ D   ++ LI      G    A+ L +EM  +G  P+   Y  LI +      KA
Sbjct: 301 KRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMC----KA 356

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L +A+ +  +M+      PN  TY  L+   +Q   + Q   + KE+ E+   P I T
Sbjct: 357 GNLNRAMEFLDQMRD-RGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIIT 415

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN +++ +   G +++   +L  M      PD+++++ +I  + + Q  +K  Q+   ++
Sbjct: 416 YNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMV 475

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                P + T++S+I    K R  G+   +FQ+M ++   P  +TY  +I  Y    ++ 
Sbjct: 476 AKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLD 535

Query: 244 RAREIFDELSKLGKDMKVSTLN-------------------------------------- 265
           +A  + DE+ + G    + T N                                      
Sbjct: 536 KALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLI 595

Query: 266 ------------AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
                       A+++ +CM GL  EAD + E+    G   +   Y ++   ++K    E
Sbjct: 596 DNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIE 655

Query: 314 LVQKLLKRMEQNGIVPN 330
               L K M  +G  P+
Sbjct: 656 KAYNLYKEMLHSGFAPH 672



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 119/265 (44%), Gaps = 5/265 (1%)

Query: 81  RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-IKE 139
           +CK +   +++++++CA+   +++  ++          P + +YN ++DA  +    +K 
Sbjct: 127 QCKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKI 186

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
            E +   M  +   P++ T+N+LI  +      +     F  +  +   P + T+N++I 
Sbjct: 187 AEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIID 246

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGK 257
            Y K R  G+A  + + M      P+ I+Y  +I   G C    +    EI +E+SK   
Sbjct: 247 AYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVIN--GLCREGQMKETSEILEEMSKRRY 304

Query: 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
                T N ++  YC  G   +A +L       G++P+  TY  L  +  KA       +
Sbjct: 305 VPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAME 364

Query: 318 LLKRMEQNGIVPNKRFFLEALETFS 342
            L +M   G+ PN R +   ++ FS
Sbjct: 365 FLDQMRDRGLHPNGRTYTTLIDGFS 389


>gi|449443502|ref|XP_004139516.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Cucumis sativus]
 gi|449492820|ref|XP_004159111.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Cucumis sativus]
          Length = 704

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 149/303 (49%), Gaps = 8/303 (2%)

Query: 33  LFSEMRNSGCRPDPSVYNALIT-AHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI 91
           LF EM N G +PD   ++ +I+ A L +       +KA+ +F+KM   + C P+ VTY+ 
Sbjct: 201 LFEEMINRGVKPDNVTFSTIISCARLCSLP-----SKAVEWFEKMPSFD-CNPDDVTYST 254

Query: 92  LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151
           ++ A  +A NVD   +L+          D  T++ ++  +G  G      +V   MK+  
Sbjct: 255 MIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNYDGCLNVYEEMKAIG 314

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
            KP+++ +N L+D+ G+ +   +++ ++K ++ +   P+  T+ S++  YG+AR    A 
Sbjct: 315 IKPNLVIYNCLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASLLRAYGRARYGEDAL 374

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS-TLNAMLEA 270
            V+++M       + I Y  ++ M      V+ A EIF ++   G     S T ++M+  
Sbjct: 375 IVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEIFQDMKSSGTCSPDSWTFSSMITI 434

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y   G  +EA+ +  +    G  P+      L + Y KA   + V +   ++ + G+ P+
Sbjct: 435 YSCGGKVSEAEEMLNDMVEAGFDPNIFVLTSLIQCYGKAKRVDDVVRTFNQLIELGLTPD 494

Query: 331 KRF 333
            RF
Sbjct: 495 DRF 497



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 106/262 (40%), Gaps = 41/262 (15%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS +I   G+ G   +A  L+   R    R DP+ ++ +I  H      A      
Sbjct: 248 DDVTYSTMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIH----GVAGNYDGC 303

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  +++MK +   KPN+V YN LL A  +A+   Q+  ++KE+ ++  +P   TY  ++ 
Sbjct: 304 LNVYEEMKAI-GIKPNLVIYNCLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASLLR 362

Query: 130 AYGKN-----------------------------------GMIKEMESVLSRMKSN-QCK 153
           AYG+                                    G + E   +   MKS+  C 
Sbjct: 363 AYGRARYGEDALIVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEIFQDMKSSGTCS 422

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           PD  TF+ +I  Y       + E++   ++ +   P +    S+I  YGKA+        
Sbjct: 423 PDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFDPNIFVLTSLIQCYGKAKRVDDVVRT 482

Query: 214 FQKMTAMKYTPSFITYECIITM 235
           F ++  +  TP      C++ +
Sbjct: 483 FNQLIELGLTPDDRFCGCLLNV 504



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 127/299 (42%), Gaps = 41/299 (13%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL YFQ M    +     + YN+ L+   + R+++    LF+E+    + PD  T++ ++
Sbjct: 165 ALRYFQDMLKSSK---QTIFYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFSTII 221

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-------------------- 168
                  +  +      +M S  C PD +T++ +ID+YG+                    
Sbjct: 222 SCARLCSLPSKAVEWFEKMPSFDCNPDDVTYSTMIDAYGRAGNVDMAFSLYDRARTENWR 281

Query: 169 ---------------RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
                             +D    V++ +     KP L  +N ++   G+A+   + + +
Sbjct: 282 IDPATFSTMIKIHGVAGNYDGCLNVYEEMKAIGIKPNLVIYNCLLDAMGRAKRPWQIKTI 341

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           +++M    ++PS+ TY  ++  YG       A  ++ E+ + G  + V   N +L A C 
Sbjct: 342 YKEMIKNGFSPSWATYASLLRAYGRARYGEDALIVYKEMKEKGLQLNVILYNTLL-AMCA 400

Query: 274 N-GLPTEADLLFENSHNMGV-TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + G   EA  +F++  + G  +PDS T+  +   Y+        +++L  M + G  PN
Sbjct: 401 DVGYVNEAVEIFQDMKSSGTCSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFDPN 459


>gi|3107905|dbj|BAA25906.1| leaf protein [Ipomoea nil]
          Length = 665

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 154/357 (43%), Gaps = 39/357 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D+  ++ +I    + G  + AM +F +MR  GC+P  S +NALI        K +  +K 
Sbjct: 137 DSIFFNPMINAFCESGNVKEAMKIFRKMREKGCKPTASTFNALIKG-FGIIGKPEESSKL 195

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L   + M   E  KP+  TYNIL++A     N+++   +   +  + L PD+ TYN +  
Sbjct: 196 L---EIMSREENIKPDDRTYNILVQAWCNKNNIEKAWGVVHRMVGAGLKPDVVTYNTIAR 252

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-------------QAFDKME 176
           AY +         ++S+M++N+  P++ T  +++D Y K              Q F    
Sbjct: 253 AYARGKETSRAAELISQMQNNKVAPNVRTCGIVVDGYSKEGNMADALKFIYKMQGFGVHP 312

Query: 177 Q--VFKSLMHS--------------------KEKPTLPTFNSMIINYGKARLQGKAEYVF 214
              +F SL+                        KP + T+++++  +  A L  K E +F
Sbjct: 313 NLFIFNSLLKGFLDITDTKGVDETLTLMQEFGVKPDVVTYSTIMNAWSSAGLMEKCEEMF 372

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           Q M      P    +  +   Y       +A  + + ++  G    V     ++  +C  
Sbjct: 373 QDMIKSGIEPDNHAFSILAKGYVRAGEPKKAEALLEAMATHGAHPNVVMFTTIISGWCSA 432

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
               +A  +++    M V P+ +T++ L   Y +AN     ++LL+ ME+ G++P K
Sbjct: 433 AKMEDALRVYDRMCRMDVQPNLNTFETLIWGYGEANEPWKAEELLQIMEEMGVLPRK 489



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 150/332 (45%), Gaps = 6/332 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ ++A +  + + +    L  ++  +G RPD   +N +I A   + +    + +A+  F
Sbjct: 106 YTTVLAALTLQKRFKSIPLLLKKVEQNGLRPDSIFFNPMINAFCESGN----VKEAMKIF 161

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL-HESILAPDIYTYNGVMDAYG 132
           +KM+  + CKP   T+N L++        ++ + L + +  E  + PD  TYN ++ A+ 
Sbjct: 162 RKMR-EKGCKPTASTFNALIKGFGIIGKPEESSKLLEIMSREENIKPDDRTYNILVQAWC 220

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
               I++   V+ RM     KPD++T+N +  +Y + +   +  ++   + ++K  P + 
Sbjct: 221 NKNNIEKAWGVVHRMVGAGLKPDVVTYNTIARAYARGKETSRAAELISQMQNNKVAPNVR 280

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T   ++  Y K      A     KM      P+   +  ++  +    +     E    +
Sbjct: 281 TCGIVVDGYSKEGNMADALKFIYKMQGFGVHPNLFIFNSLLKGFLDITDTKGVDETLTLM 340

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            + G    V T + ++ A+   GL  + + +F++    G+ PD+  + +L K Y +A   
Sbjct: 341 QEFGVKPDVVTYSTIMNAWSSAGLMEKCEEMFQDMIKSGIEPDNHAFSILAKGYVRAGEP 400

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           +  + LL+ M  +G  PN   F   +  + S+
Sbjct: 401 KKAEALLEAMATHGAHPNVVMFTTIISGWCSA 432



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 120/294 (40%), Gaps = 42/294 (14%)

Query: 80  ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
           E  +P +VTY  +L A    +    +  L K++ ++ L PD   +N +++A+ ++G +KE
Sbjct: 97  EGHRPTLVTYTTVLAALTLQKRFKSIPLLLKKVEQNGLRPDSIFFNPMINAFCESGNVKE 156

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL-MHSKE---KPTLPTFN 195
              +  +M+   CKP   TFN LI  +G      K E+  K L + S+E   KP   T+N
Sbjct: 157 AMKIFRKMREKGCKPTASTFNALIKGFG---IIGKPEESSKLLEIMSREENIKPDDRTYN 213

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
            ++  +       KA  V  +M      P  +TY  I   Y      SRA E+  ++   
Sbjct: 214 ILVQAWCNKNNIEKAWGVVHRMVGAGLKPDVVTYNTIARAYARGKETSRAAELISQMQNN 273

Query: 256 GKDMKVSTLNAMLEAYC--------------MNGLPTEADLLFENS-------------- 287
                V T   +++ Y               M G     +L   NS              
Sbjct: 274 KVAPNVRTCGIVVDGYSKEGNMADALKFIYKMQGFGVHPNLFIFNSLLKGFLDITDTKGV 333

Query: 288 -------HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
                     GV PD  TY  +  A++ A + E  +++ + M ++GI P+   F
Sbjct: 334 DETLTLMQEFGVKPDVVTYSTIMNAWSSAGLMEKCEEMFQDMIKSGIEPDNHAF 387



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 129/297 (43%), Gaps = 15/297 (5%)

Query: 55  AHLHTRDKAKALAKALGYFQKMKGMERCKPN-----IVTYNILLRACAQARNVDQVNALF 109
           +HLH   +A  ++  + Y  ++     C  N     + +   L++   +     +V+++ 
Sbjct: 33  SHLH-EGEAHLVSTPVSYPTQVVRCTACWGNDGCQTVRSRTKLMKTLIERGKPQEVHSIT 91

Query: 110 KELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR 169
           K L E    P + TY  V+ A       K +  +L +++ N  +PD I FN +I+++ + 
Sbjct: 92  KGLTEEGHRPTLVTYTTVLAALTLQKRFKSIPLLLKKVEQNGLRPDSIFFNPMINAFCES 151

Query: 170 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM----KYTPS 225
               +  ++F+ +     KPT  TFN++I  +G   + GK E   + +  M       P 
Sbjct: 152 GNVKEAMKIFRKMREKGCKPTASTFNALIKGFG---IIGKPEESSKLLEIMSREENIKPD 208

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
             TY  ++  +   +N+ +A  +   +   G    V T N +  AY      + A  L  
Sbjct: 209 DRTYNILVQAWCNKNNIEKAWGVVHRMVGAGLKPDVVTYNTIARAYARGKETSRAAELIS 268

Query: 286 NSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
              N  V P+  T  ++   Y+K  NM + + K + +M+  G+ PN   F   L+ F
Sbjct: 269 QMQNNKVAPNVRTCGIVVDGYSKEGNMADAL-KFIYKMQGFGVHPNLFIFNSLLKGF 324


>gi|168036199|ref|XP_001770595.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678116|gb|EDQ64578.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 743

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 145/328 (44%), Gaps = 5/328 (1%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           +I V G KG  + A  LF  +R+S  + D   YN +I  ++    +     +A   ++ M
Sbjct: 401 MINVHGLKGDVKQAEELFRSLRSSVSKLDIIAYNVIINVYM----RYGMHEEAFRIYKLM 456

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +  +   P+  TY+ +LR C +     Q   ++  L  S +  D    N V++   +   
Sbjct: 457 EEEDGLLPDSYTYHSMLRMCQKCNLQTQAEEIYWRLRNSDVELDEVMCNCVLNTCARFLP 516

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           ++E+  +   M    C P+ ITFN++ID YGK    D+     K L          TF++
Sbjct: 517 LEEVHKIFQEMIDVGCIPNTITFNVMIDLYGKSGMLDRARDASK-LAQQLGVADKITFST 575

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           +I +YGK +     E    +M    +  S   Y C++  YG   ++ +  ++   + K G
Sbjct: 576 LINSYGKKQDFRNMEATLWEMQNAGHGGSLEAYNCVLDAYGKAGHLDKLEDVIARMEKSG 635

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
             M +++ N ++  Y  +    E + LF      G  PD  TY  + + Y  A+  +   
Sbjct: 636 LQMDLASYNILINIYGRHTKIAEMEALFHKMQEEGFIPDRWTYNTMIRTYGYADYPDKAV 695

Query: 317 KLLKRMEQNGIVPNKRFFLEALETFSSS 344
              K M+ +GI+P++  ++  +  F  +
Sbjct: 696 DTFKMMQDSGIMPDRVTYVMLVAAFEKA 723



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 147/330 (44%), Gaps = 10/330 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +  ++G + Q  +   L  +M   GC PD   +N LI     +  KA     A   F
Sbjct: 14  YNIMFKILGSRQQWPIIDELLGQMLGDGCVPDDYTFNTLIM----SASKADYADYATRAF 69

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           Q M  KG++   P  +TY++++    +   V+     F  + +S +   +  Y+ ++  Y
Sbjct: 70  QMMLEKGVQ---PTRLTYSMMMLLYQKNGKVEDAEVAFSHMLQSGIQV-VAAYSAMIAIY 125

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G  ++ E ++  M +++  PD   +   +++YG++   ++ E +  ++        +
Sbjct: 126 TRCGFFEKAEKIMEDMWNHKIAPDRDNWLKQMNTYGQQGKIEEAEHIMDTMERLGMHLGV 185

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             +NSMI  YGKA L  KA  +F+KM      P  +TY C+I   G    +  A + F  
Sbjct: 186 VGYNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGACGRAGKLRDALDYFQA 245

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + +LG     S  N ++  Y           +  +  N G TPDS T   + +AY +A  
Sbjct: 246 MKRLGIMPASSNFNTLISLYGKARNVVGIVRVLADMKNFGCTPDSQTLDAVVRAYERAGQ 305

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            + V ++L  + + G V +   +   L  +
Sbjct: 306 TKKVVQVLSLLREAGWVEDTESYGTLLHVY 335



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 140/315 (44%), Gaps = 6/315 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I   GK G    A+ LF +M+ +G  PD   Y+ +I A      +A  L  AL YF
Sbjct: 188 YNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGAC----GRAGKLRDALDYF 243

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           Q MK +    P    +N L+    +ARNV  +  +  ++      PD  T + V+ AY +
Sbjct: 244 QAMKRL-GIMPASSNFNTLISLYGKARNVVGIVRVLADMKNFGCTPDSQTLDAVVRAYER 302

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G  K++  VLS ++      D  ++  L+  Y K     +   VF ++  +   P    
Sbjct: 303 AGQTKKVVQVLSLLREAGWVEDTESYGTLLHVYLKCNLQKEALSVFSAMRKAGMAPKEYM 362

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
             S+I     A +   A  VF+ M +    PS  T   +I ++G   +V +A E+F  L 
Sbjct: 363 CRSLICACKDAGMFEDATNVFRDMQSAGVVPSLETSCTMINVHGLKGDVKQAEELFRSLR 422

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE-NSHNMGVTPDSSTYKLLYKAYTKANMK 312
                + +   N ++  Y   G+  EA  +++      G+ PDS TY  + +   K N++
Sbjct: 423 SSVSKLDIIAYNVIINVYMRYGMHEEAFRIYKLMEEEDGLLPDSYTYHSMLRMCQKCNLQ 482

Query: 313 ELVQKLLKRMEQNGI 327
              +++  R+  + +
Sbjct: 483 TQAEEIYWRLRNSDV 497



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 103/218 (47%), Gaps = 16/218 (7%)

Query: 33  LFSEMRNSGCRPDPSVYNALI-----TAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 87
           +F EM + GC P+   +N +I     +  L     A  LA+ LG   K           +
Sbjct: 523 IFQEMIDVGCIPNTITFNVMIDLYGKSGMLDRARDASKLAQQLGVADK-----------I 571

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           T++ L+ +  + ++   + A   E+  +     +  YN V+DAYGK G + ++E V++RM
Sbjct: 572 TFSTLINSYGKKQDFRNMEATLWEMQNAGHGGSLEAYNCVLDAYGKAGHLDKLEDVIARM 631

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           + +  + D+ ++N+LI+ YG+     +ME +F  +      P   T+N+MI  YG A   
Sbjct: 632 EKSGLQMDLASYNILINIYGRHTKIAEMEALFHKMQEEGFIPDRWTYNTMIRTYGYADYP 691

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
            KA   F+ M      P  +TY  ++  +    N+  A
Sbjct: 692 DKAVDTFKMMQDSGIMPDRVTYVMLVAAFEKAGNLLEA 729



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 107/254 (42%), Gaps = 1/254 (0%)

Query: 81  RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140
           + + N+ +YNI+ +     +    ++ L  ++      PD YT+N ++ +  K       
Sbjct: 6   KTRGNVYSYNIMFKILGSRQQWPIIDELLGQMLGDGCVPDDYTFNTLIMSASKADYADYA 65

Query: 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
                 M     +P  +T+++++  Y K    +  E  F  ++ S  +  +  +++MI  
Sbjct: 66  TRAFQMMLEKGVQPTRLTYSMMMLLYQKNGKVEDAEVAFSHMLQSGIQ-VVAAYSAMIAI 124

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
           Y +     KAE + + M   K  P    +   +  YG    +  A  I D + +LG  + 
Sbjct: 125 YTRCGFFEKAEKIMEDMWNHKIAPDRDNWLKQMNTYGQQGKIEEAEHIMDTMERLGMHLG 184

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           V   N+M+ AY   GL  +A  LFE     G+ PD  TY  +  A  +A          +
Sbjct: 185 VVGYNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGACGRAGKLRDALDYFQ 244

Query: 321 RMEQNGIVPNKRFF 334
            M++ GI+P    F
Sbjct: 245 AMKRLGIMPASSNF 258



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 131/323 (40%), Gaps = 18/323 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS ++ +  K G+   A   FS M  SG +   + Y+A+I   ++TR          G+F
Sbjct: 84  YSMMMLLYQKNGKVEDAEVAFSHMLQSGIQV-VAAYSAMIA--IYTR---------CGFF 131

Query: 74  QK----MKGM--ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +K    M+ M   +  P+   +   +    Q   +++   +   +    +   +  YN +
Sbjct: 132 EKAEKIMEDMWNHKIAPDRDNWLKQMNTYGQQGKIEEAEHIMDTMERLGMHLGVVGYNSM 191

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           + AYGK G+ ++   +  +MK    +PD +T++ +I + G+          F+++     
Sbjct: 192 ITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGACGRAGKLRDALDYFQAMKRLGI 251

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P    FN++I  YGKAR       V   M     TP   T + ++  Y       +  +
Sbjct: 252 MPASSNFNTLISLYGKARNVVGIVRVLADMKNFGCTPDSQTLDAVVRAYERAGQTKKVVQ 311

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +   L + G      +   +L  Y    L  EA  +F      G+ P     + L  A  
Sbjct: 312 VLSLLREAGWVEDTESYGTLLHVYLKCNLQKEALSVFSAMRKAGMAPKEYMCRSLICACK 371

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
            A M E    + + M+  G+VP+
Sbjct: 372 DAGMFEDATNVFRDMQSAGVVPS 394



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 121/287 (42%), Gaps = 9/287 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +IA+  + G    A  +  +M N    PD   +       ++T  +   + +A    
Sbjct: 118 YSAMIAIYTRCGFFEKAEKIMEDMWNHKIAPDRDNW----LKQMNTYGQQGKIEEAE--- 170

Query: 74  QKMKGMERCKPN--IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             M  MER   +  +V YN ++ A  +A   ++   LF+++ E+ L PD  TY+ ++ A 
Sbjct: 171 HIMDTMERLGMHLGVVGYNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGAC 230

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           G+ G +++       MK     P    FN LI  YGK +    + +V   + +    P  
Sbjct: 231 GRAGKLRDALDYFQAMKRLGIMPASSNFNTLISLYGKARNVVGIVRVLADMKNFGCTPDS 290

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T ++++  Y +A    K   V   +    +     +Y  ++ +Y  C+    A  +F  
Sbjct: 291 QTLDAVVRAYERAGQTKKVVQVLSLLREAGWVEDTESYGTLLHVYLKCNLQKEALSVFSA 350

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
           + K G   K     +++ A    G+  +A  +F +  + GV P   T
Sbjct: 351 MRKAGMAPKEYMCRSLICACKDAGMFEDATNVFRDMQSAGVVPSLET 397



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 9/167 (5%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           Q+  +AD   +S LI   GKK   R       EM+N+G       YN ++ A+     KA
Sbjct: 563 QQLGVADKITFSTLINSYGKKQDFRNMEATLWEMQNAGHGGSLEAYNCVLDAY----GKA 618

Query: 64  KALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             L K      +M+  G++    ++ +YNIL+    +   + ++ ALF ++ E    PD 
Sbjct: 619 GHLDKLEDVIARMEKSGLQM---DLASYNILINIYGRHTKIAEMEALFHKMQEEGFIPDR 675

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
           +TYN ++  YG      +       M+ +   PD +T+ +L+ ++ K
Sbjct: 676 WTYNTMIRTYGYADYPDKAVDTFKMMQDSGIMPDRVTYVMLVAAFEK 722



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 82/180 (45%), Gaps = 1/180 (0%)

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           ++ + + ++ ++N++    G RQ +  ++++   ++     P   TFN++I++  KA   
Sbjct: 3   ENGKTRGNVYSYNIMFKILGSRQQWPIIDELLGQMLGDGCVPDDYTFNTLIMSASKADYA 62

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
             A   FQ M      P+ +TY  ++ +Y     V  A   F  + + G  + V+  +AM
Sbjct: 63  DYATRAFQMMLEKGVQPTRLTYSMMMLLYQKNGKVEDAEVAFSHMLQSGIQV-VAAYSAM 121

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +  Y   G   +A+ + E+  N  + PD   +      Y +    E  + ++  ME+ G+
Sbjct: 122 IAIYTRCGFFEKAEKIMEDMWNHKIAPDRDNWLKQMNTYGQQGKIEEAEHIMDTMERLGM 181


>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
          Length = 1025

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 139/304 (45%), Gaps = 5/304 (1%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + +T  Y+ +I+  G + Q R A+ L +EMR+ G + +   Y+AL+   +    K   L 
Sbjct: 192 LCNTMTYTTMISQCGTQQQLRRALELVAEMRSRGIQCNVHTYSALMNVCI----KGNELD 247

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            AL  +++M   E C PN+VTYN L+    +    ++   +   L    + P+I TYN V
Sbjct: 248 LALDVYRQMLA-EGCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTV 306

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           + A   +G  +E   +  RM +   +P   T+  LI +YGK    D+  Q+F+ ++    
Sbjct: 307 IIACNMSGQAQEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGC 366

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +  + T++S+I    KA     A  +F++M      P+ +TY  +I          +A+E
Sbjct: 367 ERNVITYSSLISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQE 426

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F+++   G      T   ++ AY   G    A   FE        PDS  Y  +  A  
Sbjct: 427 MFEQMQHRGCKPDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVGALW 486

Query: 308 KANM 311
           K  +
Sbjct: 487 KTGL 490



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 153/339 (45%), Gaps = 15/339 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD--PSVYNALITAHLHTRD 61
           Q  Y  D+G  + L+  + K G  R A  LF  +R      D  P       T  +    
Sbjct: 147 QGLYYFDSGALAALLKELNKSGHVRRAQELFDWLRGLDDSHDLYPLCNTMTYTTMISQCG 206

Query: 62  KAKALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
             + L +AL    +M+  G++ C  N+ TY+ L+  C +   +D    +++++      P
Sbjct: 207 TQQQLRRALELVAEMRSRGIQ-C--NVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTP 263

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           ++ TYN ++D YGK G  +E   VL  ++     P+I T+N +I +        +  +++
Sbjct: 264 NLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIY 323

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           + ++ +  +PT  T+ ++I  YGK     +A  +FQ M       + ITY  +I+    C
Sbjct: 324 ERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISA---C 380

Query: 240 DNVSR---AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE-ADLLFENSHNMGVTPD 295
           +   R   A E+F E+   G    V T N+++ A C  G   E A  +FE   + G  PD
Sbjct: 381 EKAGRWELALELFREMHTEGCRPNVVTYNSLIAA-CAQGAQWEKAQEMFEQMQHRGCKPD 439

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           + T+  L  AY +A          ++M+ +   P+   +
Sbjct: 440 AVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVY 478



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 5/124 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI+   K G+  LA+ LF EM   GCRP+   YN+LI A      +     KA   F
Sbjct: 373 YSSLISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACA----QGAQWEKAQEMF 428

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M+    CKP+ VT+  L+ A  +A +  +    F+++      PD   YN ++ A  K
Sbjct: 429 EQMQ-HRGCKPDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVGALWK 487

Query: 134 NGMI 137
            G++
Sbjct: 488 TGLV 491


>gi|10177016|dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana]
          Length = 680

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 157/333 (47%), Gaps = 13/333 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGK--KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +Q  Y +D   YS +I  + +  K  + + + L+ E+       D  + N +I     + 
Sbjct: 195 RQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSG 254

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           D +KAL + LG  Q   G+      +V+   ++ A A +    +  ALF+EL +S + P 
Sbjct: 255 DPSKAL-QLLGMAQA-TGLSAKTATLVS---IISALADSGRTLEAEALFEELRQSGIKPR 309

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
              YN ++  Y K G +K+ ES++S M+     PD  T++LLID+Y     ++    V K
Sbjct: 310 TRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLK 369

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYG 237
            +     +P    F+ ++  +   R +G+ +  FQ +  MK     P    Y  +I  +G
Sbjct: 370 EMEAGDVQPNSFVFSRLLAGF---RDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFG 426

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
             + +  A   FD +   G +    T N +++ +C +G    A+ +FE     G  P ++
Sbjct: 427 KFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCAT 486

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           TY ++  +Y      + +++LL +M+  GI+PN
Sbjct: 487 TYNIMINSYGDQERWDDMKRLLGKMKSQGILPN 519



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 141/320 (44%), Gaps = 5/320 (1%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T  Y+ L+    K G  + A  + SEM   G  PD   Y+ LI A+++    A     A 
Sbjct: 310 TRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVN----AGRWESAR 365

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
              ++M+  +  +PN   ++ LL          +   + KE+    + PD   YN V+D 
Sbjct: 366 IVLKEMEAGD-VQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDT 424

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           +GK   +    +   RM S   +PD +T+N LID + K       E++F+++      P 
Sbjct: 425 FGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPC 484

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             T+N MI +YG        + +  KM +    P+ +T+  ++ +YG     + A E  +
Sbjct: 485 ATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLE 544

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+  +G     +  NA++ AY   GL  +A   F    + G+ P       L  A+ +  
Sbjct: 545 EMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDR 604

Query: 311 MKELVQKLLKRMEQNGIVPN 330
                  +L+ M++NG+ P+
Sbjct: 605 RDAEAFAVLQYMKENGVKPD 624



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 146/330 (44%), Gaps = 5/330 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   YS LI      G+   A  +  EM     +P+  V++ L+      RD+
Sbjct: 337 EKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGF---RDR 393

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +   K     ++MK +   KP+   YN+++    +   +D     F  +    + PD  
Sbjct: 394 GE-WQKTFQVLKEMKSIG-VKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRV 451

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           T+N ++D + K+G     E +   M+   C P   T+N++I+SYG ++ +D M+++   +
Sbjct: 452 TWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKM 511

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 P + T  +++  YGK+     A    ++M ++   PS   Y  +I  Y      
Sbjct: 512 KSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLS 571

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A   F  ++  G    +  LN+++ A+  +    EA  + +     GV PD  TY  L
Sbjct: 572 EQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTL 631

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
            KA  + +  + V  + + M  +G  P+++
Sbjct: 632 MKALIRVDKFQKVPVVYEEMIMSGCKPDRK 661



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 114/255 (44%), Gaps = 7/255 (2%)

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y+IL+ A  ++  + +    F    +  L P   TYN ++ A  +N  I++  +++++M+
Sbjct: 141 YSILIHALGRSEKLYEA---FLLSQKQTLTP--LTYNALIGACARNNDIEKALNLIAKMR 195

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDK--MEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
            +  + D + ++L+I S  +    D   + +++K +   K +  +   N +I+ + K+  
Sbjct: 196 QDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGD 255

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
             KA  +     A   +    T   II+          A  +F+EL + G   +    NA
Sbjct: 256 PSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNA 315

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           +L+ Y   G   +A+ +       GV+PD  TY LL  AY  A   E  + +LK ME   
Sbjct: 316 LLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGD 375

Query: 327 IVPNKRFFLEALETF 341
           + PN   F   L  F
Sbjct: 376 VQPNSFVFSRLLAGF 390


>gi|410110125|gb|AFV61142.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           micromera]
          Length = 434

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 154/327 (47%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 7   RQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKXCDY 66

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  
Sbjct: 67  SKAIS----IFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 121

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +
Sbjct: 122 SYSTLLTMYXENKKFLEALSVFSEMREIKCXLDLTTCNIMIDVYGQLGMAKEADKLFWGM 181

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  +I +YG     
Sbjct: 182 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEH 241

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + GV  D   ++ +
Sbjct: 242 EKANNLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTM 301

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  +++   +P
Sbjct: 302 IVAYERAGLVAHAKRLLHELKRPDNIP 328



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 142/302 (47%), Gaps = 5/302 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF EMR     PD   Y+ LIT H     K      AL + QKM+  ++   ++V Y+ L
Sbjct: 2   LFDEMRQRALSPDRYTYSTLIT-HF---GKEGLFDAALSWLQKME-QDQVPGDLVLYSNL 56

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  S++S MK+   
Sbjct: 57  IELSRKXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGV 116

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+  +  +A+ 
Sbjct: 117 MPNTTSYSTLLTMYXENKKFLEALSVFSEMREIKCXLDLTTCNIMIDVYGQLGMAKEADK 176

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T N+M+  Y 
Sbjct: 177 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYG 236

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
                 +A+ L +   + G+ P+S TY  +   + K    +    L +++  +G+  ++ 
Sbjct: 237 KTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQI 296

Query: 333 FF 334
            F
Sbjct: 297 LF 298



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 111/224 (49%)

Query: 107 ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
            LF E+ +  L+PD YTY+ ++  +GK G+     S L +M+ +Q   D++ ++ LI+  
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELS 60

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
            K   + K   +F  L  S   P L  +N+MI  +GKA+L  +A  +  +M      P+ 
Sbjct: 61  RKXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 120

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
            +Y  ++TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF  
Sbjct: 121 TSYSTLLTMYXENKKFLEALSVFSEMREIKCXLDLTTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              MG+ P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 224



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 148/360 (41%), Gaps = 42/360 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEM+ +G  P+ + Y+ L+T +      
Sbjct: 77  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYXEN--- 133

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 134 -KKFLEALSVFSEMREIKCXLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 192

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN ++  YGK    ++  +++  M+
Sbjct: 193 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQ 252

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           S   +P+ IT++ +I  +GK    D+   +F+ L  S  +     F +MI+ Y +A L  
Sbjct: 253 SRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVA 312

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++      P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 313 HAKRLLHELK----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMI 368

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
                    +    +F+    +G  PDS+   ++  AY K    +    +   M++ G V
Sbjct: 369 HLLSKYKKYSNVIEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEMQEVGCV 428


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 151/355 (42%), Gaps = 51/355 (14%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           ++ DT  YS++I  +    +   A +LF EM+ +G  PD   Y  LI        KA  +
Sbjct: 485 FVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCF----SKAGII 540

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            +A  +  +M   + C+P +VTY  L+ A  +A+ V   N LF+ +      P++ TY  
Sbjct: 541 KQAHNWLDEMV-RDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTA 599

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQC----------------KPDIITFNLLIDSYGKRQ 170
           ++D Y K+G I++   + +RM+ +                  KP+++T+  L+D   K  
Sbjct: 600 LIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAH 659

Query: 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
                  + +++     +P    ++++I  + KA    +A+ VF KM    Y P+  TY 
Sbjct: 660 KVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYS 719

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC----------MNGLP--- 277
            +I      D + + + +         D+ +  L+ MLE  C          ++GL    
Sbjct: 720 SLI------DRLFKDKRL---------DLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVA 764

Query: 278 --TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              EA  L       G  P+  TY  +   + KA   +   +L + M   G  PN
Sbjct: 765 KTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPN 819



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 126/275 (45%), Gaps = 16/275 (5%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+  TY+ ++     A  V+    LFKE+  + + PD+YTY  ++D + K G+IK+  + 
Sbjct: 487 PDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNW 546

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L  M  + C+P ++T+  LI +Y K +      ++F+ ++     P + T+ ++I  Y K
Sbjct: 547 LDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCK 606

Query: 204 -----------ARLQGKAEY-----VFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
                      AR++G A+       F+    +   P+ +TY  ++        V  AR+
Sbjct: 607 SGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARD 666

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + + +   G +      +A+++ +C      EA  +F      G  P+  TY  L     
Sbjct: 667 LLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLF 726

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           K    +LV K+L +M +N   PN   + E ++  S
Sbjct: 727 KDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLS 761



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 145/330 (43%), Gaps = 33/330 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD--------------PSV--YNALITAHL 57
           Y+ LI    K G    A  +++ MR     PD              P+V  Y AL+    
Sbjct: 597 YTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLC 656

Query: 58  HTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
               KA  +  A    + M  ++ C+PN + Y+ L+    +A  +D+   +F ++ E   
Sbjct: 657 ----KAHKVKDARDLLETM-FVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGY 711

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
            P++YTY+ ++D   K+  +  +  VLS+M  N C P+I+ +  +ID   K    D+  +
Sbjct: 712 NPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYK 771

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           +   +     KP + T+ +MI  +GKA    K   +F++M +    P+F+TY  +I    
Sbjct: 772 LMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLI---- 827

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC--MNGLPTEADL---LFENSHNMGV 292
              N   A    DE   L ++MK +     + +YC  + G   E  L   L E     G 
Sbjct: 828 ---NHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGS 884

Query: 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
            P    YK+L   + KA   E+  +L K +
Sbjct: 885 APIILLYKVLIDNFVKAGRLEVALELHKEV 914



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 119/296 (40%), Gaps = 17/296 (5%)

Query: 44  PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD 103
           P+  +YN +I+       +A    +A+ +  +M+    C PN+ TY ILL  C   + + 
Sbjct: 306 PNTILYNKMISGLC----EASFFEEAMDFLNRMRSTS-CIPNVQTYRILLCGCLNKKQLG 360

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +   +   +      P    +N ++ AY K+        +L +M+  +CKP  + +N+LI
Sbjct: 361 RCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILI 420

Query: 164 DSYGKRQ------AFDKMEQVFKSLMHSK---EKPTLPTFNSMIINYGKARLQGKAEYVF 214
            S            F+  E+ +  ++ +     K  + +F   +  +GK     KA  V 
Sbjct: 421 GSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFE---KAYKVI 477

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
            +M    + P   TY  +I        V  A  +F E+   G    V T   +++ +   
Sbjct: 478 HEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKA 537

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           G+  +A    +     G  P   TY  L  AY KA    +  +L + M   G  PN
Sbjct: 538 GIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPN 593



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 142/336 (42%), Gaps = 23/336 (6%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           ++ +T +Y+K+I+ + +      AM   + MR++ C P+   Y  L+   L+        
Sbjct: 304 FVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNK------- 356

Query: 67  AKALGYFQKMKGM---ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            K LG  +++  M   E C P+   +N L+ A  ++ +      L K++ +    P    
Sbjct: 357 -KQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVV 415

Query: 124 YNGVMDAYGKNGMI------KEMESVLSRMKSNQC---KPDIITFNLLIDSYGKRQAFDK 174
           YN ++ +    G +      +  E   + M S      K ++++F   +  +GK   F+K
Sbjct: 416 YNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGK---FEK 472

Query: 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
             +V   +M +   P   T++ +I     A     A ++F++M      P   TY  +I 
Sbjct: 473 AYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILID 532

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
            +     + +A    DE+ + G +  V T   ++ AY      + A+ LFE     G  P
Sbjct: 533 CFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFP 592

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +  TY  L   Y K+   E   ++  RM  +  +P+
Sbjct: 593 NVITYTALIDGYCKSGNIEKACQIYARMRGDADIPD 628



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 154/365 (42%), Gaps = 39/365 (10%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I +   Y  L+     K Q      + S M   GC P  +++N+L+ A+  + D + A  
Sbjct: 340 IPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYA-- 397

Query: 68  KALGYFQKMKGMERC--KPNIVTYNILLRA-CAQARNVDQVN-ALFKELHESILAP---- 119
                ++ +K ME+C  KP  V YNIL+ + C+       V   L ++ +  +L+     
Sbjct: 398 -----YKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVL 452

Query: 120 ---DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
              ++ ++   +  +GK    ++   V+  M  N   PD  T++ +I         +   
Sbjct: 453 NKVNVVSFARCLCGFGK---FEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAF 509

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
            +FK +  +   P + T+  +I  + KA +  +A     +M      P+ +TY  +I  Y
Sbjct: 510 FLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAY 569

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-----------------LPTE 279
                VS A E+F+ +   G    V T  A+++ YC +G                 +P +
Sbjct: 570 LKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIP-D 628

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
            D+ F+  +N+   P+  TY  L     KA+  +  + LL+ M  +G  PN   +   ++
Sbjct: 629 VDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALID 688

Query: 340 TFSSS 344
            F  +
Sbjct: 689 GFCKA 693



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 78/398 (19%), Positives = 154/398 (38%), Gaps = 49/398 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +Q  Y     +Y  L+ V  +    R+      E+R      D  V   L+   +    +
Sbjct: 163 RQIGYDHTPAVYIALLDVFERGSYDRVPEEFLREIRGD----DKEVLGKLLNVLIRKCCR 218

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
                 AL    ++K     KP  +TYN L++   +A  +D    + +E+ E  L+ D +
Sbjct: 219 NGLWNVALEELGRLKDFGY-KPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEF 277

Query: 123 T--------------------------------YNGVMDAYGKNGMIKEMESVLSRMKSN 150
           T                                YN ++    +    +E    L+RM+S 
Sbjct: 278 TLGFFAQALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRST 337

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
            C P++ T+ +L+     ++   + +++   ++     P+   FNS++  Y K+     A
Sbjct: 338 SCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYA 397

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK------LGKDMKVSTL 264
             + +KM   +  P ++ Y  +I     C        +  EL++      L     ++ +
Sbjct: 398 YKLLKKMEKCECKPGYVVYNILIG--SICSGGELPGPVTFELAEKAYNEMLSAGTVLNKV 455

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
           N +  A C+ G   + +  ++  H M   G  PD+STY  +      A+  E    L K 
Sbjct: 456 NVVSFARCLCGF-GKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKE 514

Query: 322 MEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTR 359
           M+  G+VP+   +   ++ FS +    Q+ +   ++ R
Sbjct: 515 MKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVR 552


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 150/332 (45%), Gaps = 8/332 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I V+ K G+   A  LF++M      P    YN +I  +      A     A    
Sbjct: 21  YTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGY----GSAGRFEDAYKLL 76

Query: 74  QKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           ++++  ER C P++V++N +L    + R VD+  +LF E+ +    P+  TYN ++D   
Sbjct: 77  ERLR--ERGCIPSVVSFNSILTCLGKKRKVDEALSLF-EVMKKDAEPNSSTYNIIIDMLC 133

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
             G ++E   +L  M+     P+++T N+++D   K +  ++  ++F+S       P   
Sbjct: 134 LGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCV 193

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+ S+I   GK     +A  +F+KM    +  + + Y  +I  +          +IF EL
Sbjct: 194 TYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKEL 253

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            + G    ++ LN  ++     G   +  ++FE+  + G  PD  +Y +L    TKA   
Sbjct: 254 IRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQA 313

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
                +   M+Q G   + R +   ++ F  S
Sbjct: 314 RETSNIFHAMKQQGFALDARAYNAVVDGFCKS 345



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 79/388 (20%), Positives = 157/388 (40%), Gaps = 35/388 (9%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI-TAHLHTRD- 61
           QR    D   Y  LI  +GKKGQ   A  LF +M ++G   +P VY +LI    +H R  
Sbjct: 185 QRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKE 244

Query: 62  -----------------------------KAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
                                        KA  + K    F+ ++      P++ +Y+IL
Sbjct: 245 DGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFL-PDVRSYSIL 303

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +A    + + +F  + +   A D   YN V+D + K+G + +   +L  MK    
Sbjct: 304 IHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCV 363

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           +P + T+  ++D   K    D+   +F+       +  +  ++S+I  +GK     +A  
Sbjct: 364 QPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYL 423

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           + ++M     TP+  T+  ++      + ++ A   F  + ++       T + ++   C
Sbjct: 424 ILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLC 483

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
                 +A + +++    G+ P+  TY  +     K         L +R + NG +P+  
Sbjct: 484 RVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAA 543

Query: 333 FF---LEALETFSSSLAGSQSGSAKTDL 357
            F   +E +   + ++   Q+G   T +
Sbjct: 544 SFNALIEGMSNANRAMEAYQAGWLDTTM 571



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 142/364 (39%), Gaps = 41/364 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I   G  G+   A  L   +R  GC P    +N+++T       K + + +AL  F
Sbjct: 56  YNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTC----LGKKRKVDEALSLF 111

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + MK  +  +PN  TYNI++        V++   +  E+  + L P++ T N ++D   K
Sbjct: 112 EVMK--KDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCK 169

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-------QAFDKM----------- 175
              ++E   +        C PD +T+  LID  GK+       + F+KM           
Sbjct: 170 ARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVV 229

Query: 176 -----------------EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
                             ++FK L+    KP L   N+ +    KA    K   +F+ + 
Sbjct: 230 YTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIR 289

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           +  + P   +Y  +I              IF  + + G  +     NA+++ +C +G   
Sbjct: 290 SYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVH 349

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           +A  + E      V P  +TY  +     K +  +    L +  +  GI  N   +   +
Sbjct: 350 KAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLI 409

Query: 339 ETFS 342
           + F 
Sbjct: 410 DGFG 413



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 120/265 (45%), Gaps = 8/265 (3%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A  +F ++K  +  KP+ V+Y  ++    +A  + +   LF ++      P  Y YN ++
Sbjct: 2   AWKFFHELKA-QGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMI 60

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
             YG  G  ++   +L R++   C P +++FN ++   GK++  D+   +F+ +M    +
Sbjct: 61  MGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFE-VMKKDAE 119

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT---PSFITYECIITMYGYCDNVSRA 245
           P   T+N +I       L G+ E  ++ +  M++    P+ +T   ++        +  A
Sbjct: 120 PNSSTYNIII---DMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEA 176

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            +IF+  S+ G +    T  ++++     G   EA  LFE   + G   +   Y  L + 
Sbjct: 177 YKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRN 236

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
           +     KE   K+ K + + G  P+
Sbjct: 237 FFIHGRKEDGHKIFKELIRRGCKPD 261



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/321 (19%), Positives = 133/321 (41%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           ++  Y+ +I ++   G+   A  +  EM ++   P+    N ++        KA+ L +A
Sbjct: 121 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLC----KARKLEEA 176

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F+       C P+ VTY  L+    +   VD+   LF+++ ++    +   Y  ++ 
Sbjct: 177 YKIFES-ASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIR 235

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +  +G  ++   +   +    CKPD+   N  +D   K    +K   +F+ +      P
Sbjct: 236 NFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLP 295

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + +++ +I    KA    +   +F  M    +      Y  ++  +     V +A EI 
Sbjct: 296 DVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEIL 355

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +E+ +      V+T  A+++         EA +LFE + + G+  +   Y  L   + K 
Sbjct: 356 EEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKV 415

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +    +L+ M + G+ PN
Sbjct: 416 GRIDEAYLILEEMMKKGLTPN 436


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 147/332 (44%), Gaps = 18/332 (5%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--D 61
            R    DT  ++ ++  + K G+   A  L + M    CRP    YN LI+     +  D
Sbjct: 38  DRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVD 97

Query: 62  KAKALAKAL---GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
           +AK L       G+           P++VTY+IL     +   +D+   L KE+  +   
Sbjct: 98  RAKTLVDEFVSSGFV----------PDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCT 147

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           P++ TYN ++D   K    ++   +L  + S+   PD++T+ +++D   K    DK  ++
Sbjct: 148 PNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKM 207

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
            + ++     P++ T+ +++    +     +A ++F++M +   T   + Y  ++   GY
Sbjct: 208 VEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVN--GY 265

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
           C + SR +E    +  +     +   NA+++ YC  G   E   +FE+    G  P+  T
Sbjct: 266 CKS-SRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKT 324

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y ++     K    +     L+ M   G VP+
Sbjct: 325 YNIVMDGLCKHGKVDEAFPFLESMHSAGCVPD 356



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 137/311 (44%), Gaps = 9/311 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + + G+   A  +F EM +  C  D   Y +L+  +  +    +A        
Sbjct: 223 YTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEA-------- 274

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           QK+    R  P I  YN L+    +   +D++  +F+++      P+I TYN VMD   K
Sbjct: 275 QKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCK 334

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G + E    L  M S  C PD++++N++ID   K     +  QV   ++ +   P   T
Sbjct: 335 HGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVT 394

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N+++  + K      A  + + M      P  +TY  +I+     + +  A E+  E+ 
Sbjct: 395 YNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEML 454

Query: 254 KLGKDMK-VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           + G  +   +T N +++  C  G   +A LL ++    GV  ++ TY +      K    
Sbjct: 455 RNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRL 514

Query: 313 ELVQKLLKRME 323
           +    LL  M+
Sbjct: 515 DEASSLLSEMD 525



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 145/357 (40%), Gaps = 43/357 (12%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA- 65
           ++ D   YS L   + K+G+   A  L  EM  +GC P+   YN LI          KA 
Sbjct: 111 FVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAY 170

Query: 66  ------------------------------LAKALGYFQKMKGMER-CKPNIVTYNILLR 94
                                         L KAL   + M  ++R C P+++TY  L+ 
Sbjct: 171 ELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGM--LKRGCTPSVITYTALME 228

Query: 95  ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
              +   VD+ + +FKE+       D   Y  +++ Y K+   KE + V+  ++     P
Sbjct: 229 GLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGT---P 285

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
            I  +N L+D Y K    D++  VF+ +      P + T+N ++    K    GK +  F
Sbjct: 286 YIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCK---HGKVDEAF 342

Query: 215 ---QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
              + M +    P  ++Y  II           AR++ D++ + G      T N ++  +
Sbjct: 343 PFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQF 402

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           C      +A  + +N    GV PD+ TY  L    ++ N      +L+  M +NG V
Sbjct: 403 CKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCV 459



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 118/273 (43%), Gaps = 39/273 (14%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P++ TYNIL+    +A   D+ + +  E+ +  + PD  T+N +MD   K G  +   S+
Sbjct: 8   PDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSL 67

Query: 144 LSRMKSNQCK-----------------------------------PDIITFNLLIDSYGK 168
           L+ M    C+                                   PD++T+++L D   K
Sbjct: 68  LAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCK 127

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
           R   D+  ++ K +  +   P L T+N++I    KA    KA  + + + +  + P  +T
Sbjct: 128 RGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVT 187

Query: 229 YECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           Y  I+   G C    + +A ++ + + K G    V T  A++E  C  G   EA  +F+ 
Sbjct: 188 YTIIVD--GLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKE 245

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
             +   T D+  Y  L   Y K++  +  QK++
Sbjct: 246 MVSKDCTADALAYVSLVNGYCKSSRTKEAQKVV 278



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 139/356 (39%), Gaps = 42/356 (11%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD   Y  L+    K  +T+ A  +   +R +   P   VYNAL+  +     K   L +
Sbjct: 253 ADALAYVSLVNGYCKSSRTKEAQKVVDGIRGT---PYIDVYNALMDGYC----KEGRLDE 305

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
               F+ M     C PNI TYNI++    +   VD+     + +H +   PD+ +YN ++
Sbjct: 306 IPNVFEDM-ACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIII 364

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D   K    KE   VL +M      PD +T+N L+  + K + FD    + K+++ +   
Sbjct: 365 DGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVD 424

Query: 189 PTLPTFNSMIINYGKARLQGKA-EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           P   T+N++I    +    G A E + + +       +  TY  II        + +A  
Sbjct: 425 PDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALL 484

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM----------------- 290
           + D ++  G +    T N  ++  C  G   EA  L      +                 
Sbjct: 485 LMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCKAE 544

Query: 291 ----------------GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                           G+   S T+ LL  A+TK    +    LL+ M Q G  P+
Sbjct: 545 QLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPS 600



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 4/221 (1%)

Query: 112 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171
           ++E  +APD++TYN ++D   K     +   +L  M      PD +TFN ++D   K   
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
           F++   +   +     +P+  T+N++I    K +   +A+ +  +  +  + P  +TY  
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYS- 119

Query: 232 IITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289
            I   G C    +  A E+  E+S  G    + T N +++  C      +A  L E   +
Sbjct: 120 -ILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVS 178

Query: 290 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            G  PD  TY ++     K    +   K+++ M + G  P+
Sbjct: 179 SGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPS 219



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 139/351 (39%), Gaps = 43/351 (12%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ +I  + K  + + A  +  +M  +G  PD   YN L+        K +   
Sbjct: 354 VPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFC----KEERFD 409

Query: 68  KALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKE-LHESILAPDIYTY 124
            A+G  + M   G++   P+ VTYN L+   +Q   +     L  E L    +     TY
Sbjct: 410 DAVGILKNMIKAGVD---PDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTY 466

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD----------- 173
           N ++D   K G +K+   ++  M  +  + + +T+N+ ID   K    D           
Sbjct: 467 NTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDT 526

Query: 174 ---------------KMEQVFKSLMHSKEKP-------TLPTFNSMIINYGKARLQGKAE 211
                          K EQ+ ++   ++E         T  TFN +I  + K +   +A 
Sbjct: 527 LRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEAL 586

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
            + + M     +PS ITY  +IT     D V +A E+FDE++  G      +   ++   
Sbjct: 587 TLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGL 646

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           C  G   EA  + E   +     D    + LY A       E   +LL+RM
Sbjct: 647 CGQGRGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRGEEAAELLRRM 697


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 156/355 (43%), Gaps = 42/355 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G+   A+ L   +     +P+  +YN +I        KAK +  A   +
Sbjct: 178 YGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIID----NMCKAKLVNDAFDLY 233

Query: 74  QKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            +M   +R  P+  T N L+   C   +  + V  L K + E+I  P +YT++ ++DA+ 
Sbjct: 234 SQMVA-KRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENI-NPRMYTFSILVDAFC 291

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G +KE + +L          D++T+N L+D Y   +  +K + +F S+        + 
Sbjct: 292 KEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQ 351

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           ++ +MI    K ++  +A  +F++M   K  P+ +TY  +I   G    +S   ++ DE+
Sbjct: 352 SYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEM 411

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G+   + T N++L+A C N    +A  L  N  + G+ PD  TY +L K   ++   
Sbjct: 412 HDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKL 471

Query: 313 ELVQK-----------------------------------LLKRMEQNGIVPNKR 332
           E  QK                                   LL +ME NG +PN +
Sbjct: 472 EDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAK 526



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 154/366 (42%), Gaps = 45/366 (12%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ +I  M K      A  L+S+M      PD    N+LI            L +A+G 
Sbjct: 212 MYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFC----IMGQLKEAVGL 267

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             KM  +E   P + T++IL+ A  +   V +   +     +  +  D+ TYN +MD Y 
Sbjct: 268 LHKMI-LENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYC 326

Query: 133 -----------------------------------KNGMIKEMESVLSRMKSNQCKPDII 157
                                              K  M+ E  ++   M+  +  P+++
Sbjct: 327 LVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVV 386

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           T+N LID  GK      + ++   +    + P + T+NS++    K     KA  +   +
Sbjct: 387 TYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNL 446

Query: 218 TAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
                 P   TY  +I   G C +  +  A+++F++L   G ++ V T   M++ +C+ G
Sbjct: 447 KDQGIRPDMYTYTVLIK--GLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKG 504

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF-F 334
           L   A  L     + G  P++ TY+++  +  + +  ++ +KLL+ M   G++  K + +
Sbjct: 505 LFDAALALLSKMEDNGCIPNAKTYEIVILSLFEKDENDMAEKLLREMIARGLLDEKSYIY 564

Query: 335 LEALET 340
           L + ET
Sbjct: 565 LASKET 570



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 92/181 (50%), Gaps = 9/181 (4%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL--HTRDK 62
           R  I +   Y+ LI  +GK G+    + L  EM + G  P+   YN+++ A    H  DK
Sbjct: 379 RKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDK 438

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A AL   L    K +G+   +P++ TY +L++   Q+  ++    +F++L       D+Y
Sbjct: 439 AIALLTNL----KDQGI---RPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVY 491

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++  +   G+     ++LS+M+ N C P+  T+ ++I S  ++   D  E++ + +
Sbjct: 492 TYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVILSLFEKDENDMAEKLLREM 551

Query: 183 M 183
           +
Sbjct: 552 I 552



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/321 (20%), Positives = 136/321 (42%), Gaps = 13/321 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++K+++ + K      A+ L  +M  +G   D   +N LI         + + +   G  
Sbjct: 73  FNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFSQLGLNSLSFS-VFGKI 131

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP----DIYTYNGVMD 129
            K KG +   PN +T+N L++      ++ Q  AL    H+ ++A     D  +Y  +++
Sbjct: 132 LK-KGFD---PNAITFNTLIKGLCLKGHIHQ--AL--NFHDKVVAQGFHLDQVSYGTLIN 183

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K G I     +L R+     +P+ + +N++ID+  K +  +    ++  ++  +  P
Sbjct: 184 GLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISP 243

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T NS+I  +       +A  +  KM      P   T+  ++  +     V  A+ + 
Sbjct: 244 DDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMML 303

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
               K    + V T N++++ YC+     +A  +F++  + GV  +  +Y  +     K 
Sbjct: 304 GVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKI 363

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
            M +    L + M    I+PN
Sbjct: 364 KMVDEAVNLFEEMRCRKIIPN 384



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 97/215 (45%), Gaps = 5/215 (2%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R  IA+   Y+ +I  + K      A+ LF EMR     P+   YN+LI        K  
Sbjct: 344 RGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDG----LGKLG 399

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            ++  L    +M    +  PNI+TYN +L A  +  +VD+  AL   L +  + PD+YTY
Sbjct: 400 KISCVLKLVDEMHDRGQ-PPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTY 458

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
             ++    ++G +++ + V   +       D+ T+ ++I  +  +  FD    +   +  
Sbjct: 459 TVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMED 518

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
           +   P   T+  +I++  +      AE + ++M A
Sbjct: 519 NGCIPNAKTYEIVILSLFEKDENDMAEKLLREMIA 553



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/311 (18%), Positives = 125/311 (40%), Gaps = 44/311 (14%)

Query: 58  HTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
           H +D+   L  +   F  +   +   P I+ +N +L +  +A++     +L +++  + +
Sbjct: 45  HHQDEENNLISS---FNSLLHHKNPTPPIIQFNKILSSLVKAKHHSTALSLHQQMELNGI 101

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR----QAFD 173
             D +T+N +++ + + G+     SV  ++      P+ ITFN LI     +    QA +
Sbjct: 102 VSDFFTFNILINCFSQLGLNSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALN 161

Query: 174 KMEQVFKSLMHSKE-------------------------------KPTLPTFNSMIINYG 202
             ++V     H  +                               +P    +N +I N  
Sbjct: 162 FHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMC 221

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL---GKDM 259
           KA+L   A  ++ +M A + +P    + C   +YG+C  + + +E    L K+     + 
Sbjct: 222 KAKLVNDAFDLYSQMVAKRISPD--DFTCNSLIYGFCI-MGQLKEAVGLLHKMILENINP 278

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
           ++ T + +++A+C  G   EA ++   +    +  D  TY  L   Y         + + 
Sbjct: 279 RMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIF 338

Query: 320 KRMEQNGIVPN 330
             M   G++ N
Sbjct: 339 DSMASRGVIAN 349


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 155/376 (41%), Gaps = 39/376 (10%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K   + AD  +Y+  I   GK G+  +A   F EM+ +G  PD   Y    T+ +    K
Sbjct: 123 KSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTY----TSMMGVLCK 178

Query: 63  AKALAKALGYFQKMKG-----------------------------MER-----CKPNIVT 88
           A  L +A+  F++M+                              +ER     C P++V 
Sbjct: 179 ANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVA 238

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN +L    +    D+   +F+E+    + P++ TYN ++    K G ++    V   MK
Sbjct: 239 YNCILTCLGKKGKTDKALRIFEEMKRDAM-PNLPTYNIIIGMLCKAGNVEAAFKVRDAMK 297

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
                P++ T N++ID   K Q  D+   +F+ + +    P   TF S+I   GK     
Sbjct: 298 EAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVD 357

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A  ++++M      P+ + Y  +I  +  CD      +++ E+ + G    +  LN  +
Sbjct: 358 DAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYM 417

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           +     G   +   LFE     G  PD+ +Y +L  +  KA       +L   M+  G V
Sbjct: 418 DCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCV 477

Query: 329 PNKRFFLEALETFSSS 344
            + R +   ++ F  S
Sbjct: 478 LDTRAYNTVIDGFCKS 493



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 140/311 (45%), Gaps = 5/311 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K R ++ DT  YS LI  + K G  R    L+  M++ GC  D   YN +I        K
Sbjct: 437 KARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFC----K 492

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +  + KA    ++MK M    P +VTY  ++   A+   +D+   LF+E   + +  +  
Sbjct: 493 SGKVNKAYQLLEEMKTMGH-HPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQV 551

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            Y+ ++D +GK G + E   V+  M      P++ T+N L+D   K +  ++    F+S+
Sbjct: 552 IYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSM 611

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
              K  P   T+  +I    K R   KA   +Q+M      P+ ITY  +I+      NV
Sbjct: 612 KDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNV 671

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           ++A  +F+     G     ++ NAM+E   +     +A  LFE +   G +  + T   L
Sbjct: 672 AQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEETRLKGCSIHTKTCVAL 731

Query: 303 YKAYTKANMKE 313
             A  KA   E
Sbjct: 732 LDALHKAECLE 742



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 151/331 (45%), Gaps = 20/331 (6%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  +  + + LI V  ++G+   A+ L  EM+++    D  +YN  I        K   +
Sbjct: 92  YEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCF----GKVGKV 147

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             A  +F +MK      P+ VTY  ++    +A  +D+   +F+++ ++   P  Y YN 
Sbjct: 148 DMAWKFFHEMKA-NGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNT 206

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  YG  G   E  S+L R ++  C P ++ +N ++   GK+   DK  ++F+  M   
Sbjct: 207 MIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEE-MKRD 265

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P LPT+N +I    KA   G  E  F+   AMK    F     I  M    D + +A+
Sbjct: 266 AMPNLPTYNIIIGMLCKA---GNVEAAFKVRDAMKEAGLFPNVRTINIMI---DRLCKAQ 319

Query: 247 EIFDELSKL--GKDMKV-----STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           ++ DE   +  G D KV     +T  ++++     G   +A  ++E   +    P+   Y
Sbjct: 320 KL-DEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVY 378

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             L + + K + KE   K+ K M ++G  P+
Sbjct: 379 TSLIRNFFKCDRKEDGHKMYKEMMRSGCSPD 409



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 148/346 (42%), Gaps = 16/346 (4%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI-----TAH 56
           Q+ +  I     Y+ ++  +GKKG+T  A+ +F EM+     P+   YN +I       +
Sbjct: 227 QRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDA-MPNLPTYNIIIGMLCKAGN 285

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
           +    K +   K  G F          PN+ T NI++    +A+ +D+  ++F+ +   +
Sbjct: 286 VEAAFKVRDAMKEAGLF----------PNVRTINIMIDRLCKAQKLDEACSIFEGMDYKV 335

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
            +PD  T+  ++D  GK G + +   +  RM      P+++ +  LI ++ K    +   
Sbjct: 336 CSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGH 395

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           +++K +M S   P L   N+ +    KA    K   +F+++ A  + P   +Y  +I   
Sbjct: 396 KMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSL 455

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                     E++  +   G  +     N +++ +C +G   +A  L E    MG  P  
Sbjct: 456 VKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTV 515

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            TY  +     K +  +    L +  + NGI  N+  +   ++ F 
Sbjct: 516 VTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFG 561



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 144/360 (40%), Gaps = 39/360 (10%)

Query: 16  KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQK 75
           +L+A   K  +   A  L   MR+   RP  S Y  LI A     +  + LA     F +
Sbjct: 31  ELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRMLA----LFNQ 86

Query: 76  MKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG 135
           M+ +   + N+     L+R  ++   VD   +L  E+  +    DI  YN  +D +GK G
Sbjct: 87  MQELGY-EVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVG 145

Query: 136 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195
            +         MK+N   PD +T+  ++    K    D+  ++F+ +  +++ P    +N
Sbjct: 146 KVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYN 205

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS-- 253
           +MI+ YG A    +A  + ++  A    PS + Y CI+T  G      +A  IF+E+   
Sbjct: 206 TMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRD 265

Query: 254 -------------------------KLGKDMK-------VSTLNAMLEAYCMNGLPTEAD 281
                                    K+   MK       V T+N M++  C      EA 
Sbjct: 266 AMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEAC 325

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            +FE       +PD +T+  L     K    +   ++ +RM     +PN   +   +  F
Sbjct: 326 SIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNF 385



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 149/345 (43%), Gaps = 9/345 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   +  LI  +GK+G+   A  ++  M ++   P+  VY +LI      R+  K   K 
Sbjct: 339 DGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLI------RNFFKCDRKE 392

Query: 70  LGYFQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            G+ +  K M R  C P+++  N  +    +A   ++  ALF+E+      PD  +Y+ +
Sbjct: 393 DGH-KMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSIL 451

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           + +  K G  +E   +   MK   C  D   +N +ID + K    +K  Q+ + +     
Sbjct: 452 IHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGH 511

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            PT+ T+ S++    K     +A  +F++  +     + + Y  +I  +G    V  A  
Sbjct: 512 HPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYL 571

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + +E+ + G    V T N +L+         EA + F++  ++  TP+  TY +L     
Sbjct: 572 VMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLC 631

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGS 352
           K           + M++ G+ PN   +   +   + S   +Q+ S
Sbjct: 632 KVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASS 676



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 147/342 (42%), Gaps = 19/342 (5%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I +  +Y+ LI    K  +      ++ EM  SGC PD      L+  ++    KA    
Sbjct: 372 IPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDL----MLLNTYMDCVFKAGETE 427

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           K    F+++K      P+  +Y+IL+ +  +A    +   L+  + +     D   YN V
Sbjct: 428 KGRALFEEIKA-RGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTV 486

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D + K+G + +   +L  MK+    P ++T+  ++D   K    D+   +F+    +  
Sbjct: 487 IDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGI 546

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +     ++S+I  +GK     +A  V ++M     TP+  T+ C++      D + +A E
Sbjct: 547 ELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLL------DGLVKAEE 600

Query: 248 IFDELSKLG--KDMKVSTLNAMLEAYCMNGLP-----TEADLLFENSHNMGVTPDSSTYK 300
           I + L      KD+K  T N +     +NGL       +A + ++     G+ P++ TY 
Sbjct: 601 INEALVCFQSMKDLK-CTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYT 659

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            +     K+        L +R   +G +P+   +   +E  S
Sbjct: 660 AMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLS 701



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 67/159 (42%)

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
           FD +EQ+   +  +   PT  T   ++ +  K+R   +A  + Q M   K+ P+F  Y  
Sbjct: 7   FDYLEQILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTT 66

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           +I          R   +F+++ +LG ++ V  L  ++  +   G    A  L +   +  
Sbjct: 67  LIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNT 126

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              D   Y +    + K    ++  K    M+ NG+VP+
Sbjct: 127 FDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPD 165



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 76/197 (38%), Gaps = 40/197 (20%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IYS LI   GK G+   A  +  EM   G  P+   +N L+   +    KA+ + +AL  
Sbjct: 552 IYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLV----KAEEINEALVC 607

Query: 73  FQKMKGMERC-----------------------------------KPNIVTYNILLRACA 97
           FQ MK + +C                                   KPN +TY  ++   A
Sbjct: 608 FQSMKDL-KCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLA 666

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           ++ NV Q ++LF+    S   PD  +YN +++         +   +    +   C     
Sbjct: 667 KSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEETRLKGCSIHTK 726

Query: 158 TFNLLIDSYGKRQAFDK 174
           T   L+D+  K +  ++
Sbjct: 727 TCVALLDALHKAECLEQ 743


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 136/317 (42%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    + G    A+ LFSE+R+    P    YN LI     T +    L  A G  
Sbjct: 350 YNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGN----LDIAKGMK 405

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             M     C P++VT+ IL+R   Q  N+     LF E+    L PD   Y   +    K
Sbjct: 406 DDMIKHGLC-PDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELK 464

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G   +   +   MK+    PD+IT+N+LI+   K   FD   ++ + +      P   T
Sbjct: 465 LGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVT 524

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + S+I  +  + L  KAE VF  M      PS +TY  +I  Y     +  A++ FDE+ 
Sbjct: 525 YTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQ 584

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V T NA++   C   +   A  LF    + GV+P+  TY +L    +     +
Sbjct: 585 DKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQ 644

Query: 314 LVQKLLKRMEQNGIVPN 330
              KL K M    I P+
Sbjct: 645 DALKLYKDMLDREIKPD 661



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 5/224 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ L+    + G   +A  LF EM + G +PD   Y   I   L    K    +KA
Sbjct: 416 DVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGEL----KLGNPSKA 471

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
            G  ++MK  E   P+++TYN+L+    +  N D  N L +++    + PD  TY  ++ 
Sbjct: 472 FGMKEEMKA-EGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIH 530

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A+  +G++++ E V S M      P ++T+ +LI SY  R   D  ++ F  +      P
Sbjct: 531 AHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSP 590

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
            + T+N++I    K  +   A  +F +M +   +P+  TY  +I
Sbjct: 591 NVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILI 634



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 144/355 (40%), Gaps = 44/355 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    KK     A  L  EM   G  P    YN +    +++  +   ++ A  Y 
Sbjct: 280 YNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTI----MYSLCRLGRVSDARRYL 335

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             M   E   P++V+YN L+   ++  N  +   LF EL    L P + TYN ++D   +
Sbjct: 336 DVMVN-EDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCR 394

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +   + +   M  +   PD++TF +L+  + +       +++F  ++    KP    
Sbjct: 395 TGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIA 454

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC-------------- 239
           + + I+   K     KA  + ++M A  + P  ITY  +I   G C              
Sbjct: 455 YTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLIN--GLCKLGNFDDANELVQK 512

Query: 240 --------DNVS---------------RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
                   D+V+               +A E+F ++ K G    V T   ++ +Y + G 
Sbjct: 513 MRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGR 572

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
              A   F+   + GV+P+  TY  L     K NM ++   L   ME  G+ PNK
Sbjct: 573 LDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNK 627



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 138/325 (42%), Gaps = 5/325 (1%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           +A  G       VM K  + ++   +   +   GC  +  V   L+   +    K   L 
Sbjct: 95  LAKNGFMKPAYWVMEKAIEVKVDGGVLDVLVGIGCGRNSEVSVKLLDLLIQVFAKKLILE 154

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           K L  F KM       P++   N +L+       V++V  ++  + +  + P I T+N +
Sbjct: 155 KCLMVFYKMVN-NGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTM 213

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           MD+  K G +     VL  M+   C P+ +++N+L++    +  FD+ +++ + +     
Sbjct: 214 MDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGL 273

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRA 245
           K +  T+N +I  + K  +  +A  + ++M      P+ +TY  I  MY  C    VS A
Sbjct: 274 KVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTI--MYSLCRLGRVSDA 331

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           R   D +        + + N ++  Y   G   EA LLF    +  + P   TY  L   
Sbjct: 332 RRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDG 391

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
             +    ++ + +   M ++G+ P+
Sbjct: 392 GCRTGNLDIAKGMKDDMIKHGLCPD 416



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 130/316 (41%), Gaps = 36/316 (11%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPD--------------------PSVYNALITAH 56
           LI V  KK      + +F +M N+G  PD                      VY+ +I   
Sbjct: 143 LIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKCQ 202

Query: 57  LH-----------TRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQV 105
           +            +R K   + +A+     M+ M  C PN V+YN+L+   +     D+ 
Sbjct: 203 IRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMR-MFGCDPNDVSYNVLVNGLSGKGEFDRA 261

Query: 106 NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
             L +++    L    +TYN ++  + K  M +E   +   M      P ++T+N ++ S
Sbjct: 262 KELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYS 321

Query: 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE--YVFQKMTAMKYT 223
             +        +    +++    P L ++N++I  YG +RL   AE   +F ++ +    
Sbjct: 322 LCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLI--YGYSRLGNFAEALLLFSELRSKNLV 379

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
           PS +TY  +I       N+  A+ + D++ K G    V T   ++  +C  G    A  L
Sbjct: 380 PSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKEL 439

Query: 284 FENSHNMGVTPDSSTY 299
           F+   + G+ PD   Y
Sbjct: 440 FDEMLSRGLKPDCIAY 455



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 96/203 (47%), Gaps = 9/203 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K   +  D   Y+ LI  + K G    A  L  +MR  G  PD   Y ++I AHL     
Sbjct: 479 KAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHL----I 534

Query: 63  AKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           +  L KA   F  M  KG+    P++VTY +L+ + A    +D     F E+ +  ++P+
Sbjct: 535 SGLLRKAEEVFSDMLKKGIH---PSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPN 591

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TYN ++    K  M+    ++ + M+S    P+  T+ +LI+     Q +    +++K
Sbjct: 592 VITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYK 651

Query: 181 SLMHSKEKPTLPTFNSMIINYGK 203
            ++  + KP   T ++++ +  K
Sbjct: 652 DMLDREIKPDSCTHSALMKHLSK 674



 Score = 41.2 bits (95), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 5/121 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI     +G+   A   F EM++ G  P+   YNALI    +   K   +  A   F
Sbjct: 560 YTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALI----YGLCKENMMDVAYNLF 615

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+  +   PN  TY IL+   +  +       L+K++ +  + PD  T++ +M    K
Sbjct: 616 AEMES-KGVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREIKPDSCTHSALMKHLSK 674

Query: 134 N 134
           +
Sbjct: 675 D 675


>gi|255661202|gb|ACU25770.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 426

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 154/327 (47%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDY 60

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           ++A++     F ++K      P++V YN ++    +A+   +  AL  E+  + + PD  
Sbjct: 61  SRAIS----IFSRLK-RSGIAPDLVAYNSMINVFGKAKLFREARALVSEMRTAGVMPDTV 115

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y  ++  Y +N    E  S+ S M+  QC  D+ T N++ID YG+     + +++F S+
Sbjct: 116 SYCTLLTMYVENQKFLEALSLFSEMREIQCSFDLTTCNIMIDVYGQLGMAKEADKLFWSM 175

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG     
Sbjct: 176 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMVIYGKTLEH 235

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+     G+  D   Y+ +
Sbjct: 236 EKANNLIQEMQDRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRCSGIEIDQVLYQTM 295

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL+ +++   +P
Sbjct: 296 IVAYERAGLVAHAKRLLQELKRPDNIP 322



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 108/217 (49%)

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
           E  L+PD YTY+ ++  +GK G+  +  S L +M+ ++   D++ ++ LI+   K   + 
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           +   +F  L  S   P L  +NSMI  +GKA+L  +A  +  +M      P  ++Y  ++
Sbjct: 62  RAISIFSRLKRSGIAPDLVAYNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTLL 121

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
           TMY        A  +F E+ ++     ++T N M++ Y   G+  EAD LF +   MG+ 
Sbjct: 122 TMYVENQKFLEALSLFSEMREIQCSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRKMGIE 181

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 218



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 127/327 (38%), Gaps = 69/327 (21%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I V GK    R A  L SEMR +G  PD   Y  L+T ++      +   +A
Sbjct: 78  DLVAYNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTLLTMYVEN----QKFLEA 133

Query: 70  LGYFQKMK---------------------GMER-------------CKPNIVTYNILLRA 95
           L  F +M+                     GM +              +PN+V+YN LLR 
Sbjct: 134 LSLFSEMREIQCSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRKMGIEPNVVSYNTLLRV 193

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
              A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+    +P+
Sbjct: 194 YGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMVIYGKTLEHEKANNLIQEMQDRGIEPN 253

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE---- 211
            IT++ +I  +GK    D+   +F+ L  S  +     + +MI+ Y +A L   A+    
Sbjct: 254 AITYSTIISIWGKVGKLDRAAMLFQKLRCSGIEIDQVLYQTMIVAYERAGLVAHAKRLLQ 313

Query: 212 ---------------------------YVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
                                      +VF++            +E +I ++        
Sbjct: 314 ELKRPDNIPRDTAIHILAGAGRIEEATWVFRQAVEAGEVKDITVFERMINLFSKHKKYPN 373

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAY 271
             E+FD++  LG     + +  +L AY
Sbjct: 374 VVEVFDKMRGLGYFPHSNVIALVLNAY 400



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 111/271 (40%), Gaps = 36/271 (13%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           +I V G+ G  + A  LF  MR  G  P+   YN L+  +      A+   +A+  F+ M
Sbjct: 155 MIDVYGQLGMAKEADKLFWSMRKMGIEPNVVSYNTLLRVY----GDAELFGEAIHLFRLM 210

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +  +  + N+VTYN ++    +    ++ N L +E+ +  + P+  TY+ ++  +GK G 
Sbjct: 211 Q-RKNIEQNVVTYNSMMVIYGKTLEHEKANNLIQEMQDRGIEPNAITYSTIISIWGKVGK 269

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSY--------GKR------------------- 169
           +     +  +++ +  + D + +  +I +Y         KR                   
Sbjct: 270 LDRAAMLFQKLRCSGIEIDQVLYQTMIVAYERAGLVAHAKRLLQELKRPDNIPRDTAIHI 329

Query: 170 -QAFDKMEQ---VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
                ++E+   VF+  + + E   +  F  MI  + K +       VF KM  + Y P 
Sbjct: 330 LAGAGRIEEATWVFRQAVEAGEVKDITVFERMINLFSKHKKYPNVVEVFDKMRGLGYFPH 389

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLG 256
                 ++  YG      +A  ++ E+   G
Sbjct: 390 SNVIALVLNAYGKLHEFDKANSVYMEMQDEG 420



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I++ GK G+   A  LF ++R SG   D  +Y  +I A+    ++A  +A A    
Sbjct: 257 YSTIISIWGKVGKLDRAAMLFQKLRCSGIEIDQVLYQTMIVAY----ERAGLVAHAKRLL 312

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           Q++K     +P+ +  +  +   A A  +++   +F++  E+    DI  +  +++ + K
Sbjct: 313 QELK-----RPDNIPRDTAIHILAGAGRIEEATWVFRQAVEAGEVKDITVFERMINLFSK 367

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           +     +  V  +M+     P      L++++YGK   FDK   V+
Sbjct: 368 HKKYPNVVEVFDKMRGLGYFPHSNVIALVLNAYGKLHEFDKANSVY 413


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 149/340 (43%), Gaps = 16/340 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI      G+ +  + +  EM   G +PD   Y +L+  +L    + +   +A
Sbjct: 272 DNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLN-YLCNNGRCR---EA 327

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F  M  KG+   KPN+  Y IL+   A    + +++ L   + E+ L+PD + +N +
Sbjct: 328 RFLFDSMIRKGI---KPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNII 384

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
             AY K  MI E   + ++MK     PD++ +  LID+  K    D     F  +M+   
Sbjct: 385 FTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGV 444

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P +  FNS++          KA+  + +M      P  + +  I+        V +A+ 
Sbjct: 445 APNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQR 504

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + D + ++G    V +   ++  +C+ G   EA    +   ++G+ PD  TY  L   Y 
Sbjct: 505 LIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYC 564

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
           +A   +    + + M +NGI P        + T+S+ L G
Sbjct: 565 RAGRIDDAYGVFREMLRNGITP-------GVVTYSTILHG 597



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 148/337 (43%), Gaps = 15/337 (4%)

Query: 8   IADTGIYSKLIAVMGKKGQT---RLAMWLFSEM-RNSGCR--PDPSVYNALITAHLHTRD 61
           IA   + + +  V G++  T    L + LF+ M R    +  PDP  Y+ LI        
Sbjct: 50  IAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIKVTPDPCTYSILIGCFCRMGR 109

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
                A    +   +K   R   NIV   +L   C   R  + ++ L K + E    PD+
Sbjct: 110 LEHGFAT---FGLILKSGWRVN-NIVINQLLKGLCDAKRLCEAMDILVKRMPELGCTPDV 165

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQ---CKPDIITFNLLIDSYGKRQAFDKMEQV 178
            +YN ++  +      +E   +L  M  +Q   C P+++++ ++I+ +      DK   +
Sbjct: 166 VSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNL 225

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           F  +M    +P + T+ ++I    KA++  +AE VFQ+M      P   TY C+I  Y  
Sbjct: 226 FLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLS 285

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
                    + +E+S  G      T  ++L   C NG   EA  LF++    G+ P+ + 
Sbjct: 286 IGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAI 345

Query: 299 YKLLYKAY-TKANMKELVQKLLKRMEQNGIVPNKRFF 334
           Y +L   Y TK  + E+   LL  M +NG+ P+   F
Sbjct: 346 YGILIHGYATKGALSEM-HDLLNLMVENGLSPDHHIF 381



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 137/319 (42%), Gaps = 11/319 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I     +GQ   A  LF EM + G +P+   Y  +I        KA+ + +A G F
Sbjct: 206 YAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLC----KAQVVDRAEGVF 261

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           Q+M  KG+   KP+  TYN L+          +V  + +E+    L PD YTY  +++  
Sbjct: 262 QQMIDKGV---KPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYL 318

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
             NG  +E   +   M     KP++  + +LI  Y  + A  +M  +   ++ +   P  
Sbjct: 319 CNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDH 378

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             FN +   Y K  +  +A ++F KM     +P  + Y  +I        V  A   F++
Sbjct: 379 HIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQ 438

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK-LLYKAYTKAN 310
           +   G    +   N+++   C      +A   +    N G+ PD   +  +L    TK  
Sbjct: 439 MMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQ 498

Query: 311 MKELVQKLLKRMEQNGIVP 329
           + +  Q+L+  ME+ G  P
Sbjct: 499 VMK-AQRLIDLMERVGTRP 516



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 134/335 (40%), Gaps = 8/335 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K  W + +  I   L  +   K        L   M   GC PD   YN L+    + +  
Sbjct: 122 KSGWRVNNIVINQLLKGLCDAKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRA 181

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +AL + L      +G   C PN+V+Y I++        VD+   LF E+ +  + P++ 
Sbjct: 182 EEAL-ELLHMMADSQG-RSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVV 239

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  V+D   K  ++   E V  +M     KPD  T+N LI  Y     + ++ ++ + +
Sbjct: 240 TYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEM 299

Query: 183 MHSKEKPTLPTFNSM---IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
                KP   T+ S+   + N G+ R   +A ++F  M      P+   Y  +I  Y   
Sbjct: 300 SAHGLKPDCYTYGSLLNYLCNNGRCR---EARFLFDSMIRKGIKPNVAIYGILIHGYATK 356

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             +S   ++ + + + G        N +  AY    +  EA  +F      G++PD   Y
Sbjct: 357 GALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNY 416

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
             L  A  K    +       +M   G+ PN   F
Sbjct: 417 GALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVF 451



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 144/332 (43%), Gaps = 5/332 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ+    D   Y  LI  + K G+   A+  F++M N G  P+  V+N+L+   L T DK
Sbjct: 405 KQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYG-LCTVDK 463

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +  AK   YF+ +   +  +P++V +N +L        V +   L   +      P + 
Sbjct: 464 WEK-AKEF-YFEMLN--QGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVI 519

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y  ++  +   G I E    L  M S   KPD  T+N L+  Y +    D    VF+ +
Sbjct: 520 SYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREM 579

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           + +   P + T+++++      R   +A+ ++  M       +   Y  I+      + V
Sbjct: 580 LRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCV 639

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A ++F  L      ++++T N M+ A   +G   +A  LF    + G+ PD  TY L+
Sbjct: 640 DEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLI 699

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            +   +    E    L   ME++G  PN R  
Sbjct: 700 AENLIEEGYLEEFDDLFSAMEKSGTTPNSRML 731



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 133/307 (43%), Gaps = 10/307 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  L+  +   G+ R A +LF  M   G +P+ ++Y  LI    H      AL++ 
Sbjct: 307 DCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILI----HGYATKGALSEM 362

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
                 M   G+    P+   +NI+  A A+   +D+   +F ++ +  L+PD+  Y  +
Sbjct: 363 HDLLNLMVENGL---SPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGAL 419

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +DA  K G + +     ++M +    P+I  FN L+        ++K ++ +  +++   
Sbjct: 420 IDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGI 479

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P +  FN+++ N        KA+ +   M  +   P  I+Y  +I  +     +  A +
Sbjct: 480 RPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAK 539

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK-LLYKAY 306
             D +  +G      T N +L  YC  G   +A  +F      G+TP   TY  +L+  +
Sbjct: 540 SLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLF 599

Query: 307 TKANMKE 313
           T     E
Sbjct: 600 TTRRFSE 606



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 84/189 (44%), Gaps = 5/189 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+    + G+   A  +F EM  +G  P    Y+ ++     TR  ++A    
Sbjct: 552 DEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELY 611

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L      K     + NI  YNI+L   ++   VD+   LF+ L       +I T+N ++ 
Sbjct: 612 LNMITSGK-----QWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIG 666

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A  K+G  ++   + + + S    PD+ T+ L+ ++  +    ++ + +F ++  S   P
Sbjct: 667 ALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTP 726

Query: 190 TLPTFNSMI 198
                N+++
Sbjct: 727 NSRMLNALV 735


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 161/368 (43%), Gaps = 36/368 (9%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALA 67
           D   Y+ LI+ + K G+   A+ +  +M +  C P+   YNA+I++       D+A  +A
Sbjct: 342 DIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIA 401

Query: 68  K-----------------------------ALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
           +                             A+  F++MKG + C+P+  TYN+L+ +   
Sbjct: 402 RLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKG-KGCRPDEFTYNMLIDSLCS 460

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
           +R +++   L KE+  +  A ++  YN ++D + KN  I+E E +   M+      D +T
Sbjct: 461 SRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVT 520

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +N LID   K +  +   Q+   ++    +P   T+NS++ ++ K     KA  + Q MT
Sbjct: 521 YNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMT 580

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           +    P  +TY  +I+       V  A  +   +   G  +     N +++A        
Sbjct: 581 SSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTH 640

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKAN--MKELVQKLLKRMEQNGIVPNKRFFL- 335
           EA  LF    +    PD+ TYK++Y+        + E V   ++ +E+  I     F + 
Sbjct: 641 EAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEMIERGNIPEFSSFVML 700

Query: 336 -EALETFS 342
            E L T S
Sbjct: 701 AEGLCTLS 708



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 142/319 (44%), Gaps = 5/319 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+  + K G  + AM +   M   G  PD   YN+LI+       K   + +A
Sbjct: 307 DQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLC----KLGEIEEA 362

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +    +M   + C PN VTYN ++ +  +   VD+   + + L    + PD+ T+N ++ 
Sbjct: 363 VKILDQMVSRD-CSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQ 421

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
               +   K    +   MK   C+PD  T+N+LIDS    +  ++   + K +  +    
Sbjct: 422 GLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCAR 481

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  +N++I  + K +   +AE +F +M     +   +TY  +I        V  A ++ 
Sbjct: 482 NVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLM 541

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D++   G      T N++L  +C  G   +A  + +   + G  PD  TY  L     KA
Sbjct: 542 DQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKA 601

Query: 310 NMKELVQKLLKRMEQNGIV 328
              ++  +LL+ ++  G+V
Sbjct: 602 GRVQVASRLLRSIQMKGMV 620



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 144/353 (40%), Gaps = 32/353 (9%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA-- 67
           D   ++ LI  + K  Q R A+ +  EM + G  PD + +  ++  ++   +   AL   
Sbjct: 202 DVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIK 261

Query: 68  -----------------------------KALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
                                        +AL + Q+    E  +P+  TYN L+    +
Sbjct: 262 EQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVS-EGFRPDQFTYNTLVNGLCK 320

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
             +      +   +    L PDIYTYN ++    K G I+E   +L +M S  C P+ +T
Sbjct: 321 IGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVT 380

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +N +I S  K    D+  ++ + L      P + TFNS+I     +     A  +F++M 
Sbjct: 381 YNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMK 440

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
                P   TY  +I        +  A  +  E+   G    V   N +++ +C N    
Sbjct: 441 GKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIE 500

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           EA+ +F+     GV+ DS TY  L     K+   E   +L+ +M   G+ P+K
Sbjct: 501 EAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDK 553



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 139/315 (44%), Gaps = 10/315 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   ++ LI  +      + AM LF EM+  GCRPD   YN LI +   +R     L 
Sbjct: 410 LPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSR----KLE 465

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +AL   ++M+ +  C  N+V YN L+    + + +++   +F E+    ++ D  TYN +
Sbjct: 466 EALNLLKEME-LNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTL 524

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D   K+  +++   ++ +M     +PD  T+N L+  + K     K   + +++  S  
Sbjct: 525 IDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGC 584

Query: 188 KPTLPTFNSMIINYGKA-RLQGKAEYVFQ-KMTAMKYTPSFITYECIITMYGYCDNVSRA 245
            P + T+ ++I    KA R+Q  +  +   +M  M  TP    Y  +I      +    A
Sbjct: 585 NPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPH--AYNPVIQALFKRNRTHEA 642

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH-NMGVTPDSSTYKLLYK 304
             +F E+    +     T   +    C  G P    + F       G  P+ S++ +L +
Sbjct: 643 MRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEMIERGNIPEFSSFVMLAE 702

Query: 305 AYTKANMKELVQKLL 319
                +M + + KL+
Sbjct: 703 GLCTLSMDDTLVKLV 717



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 90/410 (21%), Positives = 153/410 (37%), Gaps = 76/410 (18%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGC-------------------- 42
           KQ  ++  + +Y +++  +GK G       +  EM+ SGC                    
Sbjct: 89  KQPNFVPSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEFDRGIFLIFVESYGKFELY 148

Query: 43  ----------------RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI 86
                           +PD   YN L+   L   +K K +  A     +     R + ++
Sbjct: 149 DEVVGIVKVMEDEYRIKPDTRFYNVLLNV-LVDANKLKLVESAHSSMVR----RRIRHDV 203

Query: 87  VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY--------------- 131
            T+NIL++A  +A  V     + +E+    L+PD  T+  +M  Y               
Sbjct: 204 STFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQ 263

Query: 132 --------------------GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171
                                K G I +  S +    S   +PD  T+N L++   K   
Sbjct: 264 MVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGH 323

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
                +V  +++     P + T+NS+I    K     +A  +  +M +   +P+ +TY  
Sbjct: 324 AKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNA 383

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           II+     + V  A EI   L+  G    V T N++++  C++     A  LFE     G
Sbjct: 384 IISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKG 443

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
             PD  TY +L  +   +   E    LLK ME NG   N   +   ++ F
Sbjct: 444 CRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGF 493



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 132/319 (41%), Gaps = 15/319 (4%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL---HTRDKAKALAKALGYF 73
           LI    K+G+   A+    E  + G RPD   YN L+       H +   + +   L   
Sbjct: 279 LINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAML--- 335

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             + G++   P+I TYN L+    +   +++   +  ++     +P+  TYN ++ +  K
Sbjct: 336 --LGGLD---PDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCK 390

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              + E   +   + S    PD+ TFN LI              +F+ +     +P   T
Sbjct: 391 ENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFT 450

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDE 251
           +N +I +   +R   +A  + ++M       + + Y  +I   G+C N  +  A EIFDE
Sbjct: 451 YNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLID--GFCKNKRIEEAEEIFDE 508

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G      T N +++  C +    +A  L +     G+ PD  TY  L   + K   
Sbjct: 509 MELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGD 568

Query: 312 KELVQKLLKRMEQNGIVPN 330
            +    +++ M  +G  P+
Sbjct: 569 IKKAADIVQTMTSSGCNPD 587


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 145/320 (45%), Gaps = 9/320 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLHTRDKAKALAKAL 70
           I++   +   K G    AM +F++MR  G  PD   Y ALI A   L   D A+      
Sbjct: 380 IFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEV----- 434

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
             F +M   E   P+IV ++ L+         ++V  LF E+    + P+I  +N ++  
Sbjct: 435 -KFNQMIN-EGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCN 492

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             K G + E + ++  ++    +PD+I++N LID +      D+  ++ + ++    KP 
Sbjct: 493 LCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPD 552

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             ++N+++  Y KA     A   F+KM +   TP  +TY  I+         S A+E++ 
Sbjct: 553 SFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYL 612

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            +   G    + T N +L   C +    EA  +F+N  + G+  +  T+ ++  A  K  
Sbjct: 613 NMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGG 672

Query: 311 MKELVQKLLKRMEQNGIVPN 330
            KE    L   +  NG+V N
Sbjct: 673 RKEDAMDLFAAIPANGLVQN 692



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 142/343 (41%), Gaps = 49/343 (14%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           L   M   GC PD   YN L+    + +   +AL   L +      +  C PN+V+Y+ +
Sbjct: 152 LLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALE--LLHMMADDQVWSCPPNVVSYSTV 209

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +        VD+   LF E+ +  + PD+ TY  V+D   K  +    E+V  +M  N  
Sbjct: 210 INGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGV 269

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY----GKARLQG 208
           KP+I T+N LI  Y     + ++ ++ + +     KP   T+ S++ NY    G+ R   
Sbjct: 270 KPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLL-NYLCKNGRCR--- 325

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGY------------------------------ 238
           +A + F  M      PS  TY   I ++GY                              
Sbjct: 326 EARFFFDSMIGKGIKPSVTTYG--IMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNI 383

Query: 239 -------CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
                  C  + +A +IF+++ + G      +  A+++A C  G   +A++ F    N G
Sbjct: 384 FFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEG 443

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           VTPD   +  L       +  E V++L   M   GI PN  FF
Sbjct: 444 VTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFF 486



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 144/316 (45%), Gaps = 5/316 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI      G+ +  + +  EM   G +P+   Y +L+  +L    + +   +A  +F
Sbjct: 276 YNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLN-YLCKNGRCR---EARFFF 331

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             M G +  KP++ TY I+L   A    + +++ L   +  + ++P+ + +N    AY K
Sbjct: 332 DSMIG-KGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAK 390

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G+I +   + ++M+     PD +++  LID+  K    D  E  F  +++    P +  
Sbjct: 391 CGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVV 450

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           F+S++          K E +F +M  +   P+ + +  I+        V   + + D + 
Sbjct: 451 FSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIE 510

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
            +G    V + N +++ +C+ G   EA  L E   ++G+ PDS +Y  L   Y KA   +
Sbjct: 511 CMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRID 570

Query: 314 LVQKLLKRMEQNGIVP 329
                 ++M  NGI P
Sbjct: 571 SAYSHFRKMLSNGITP 586



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 134/323 (41%), Gaps = 9/323 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I  + K      A  +F +M ++G +P+   YN LI  +L    K K + + 
Sbjct: 237 DVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSI-GKWKEVVRM 295

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L   ++M      KPN  TY  LL    +     +    F  +    + P + TY  ++ 
Sbjct: 296 L---EEMSAGGP-KPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLH 351

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y   G + EM  +L+ M +N   P+   FN+   +Y K    DK   +F  +      P
Sbjct: 352 GYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSP 411

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRARE 247
              ++ ++I    K      AE  F +M     TP  + +  ++  YG C  D   +  E
Sbjct: 412 DAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLV--YGLCTVDKWEKVEE 469

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           +F E+  +G    +   N +L   C  G   E   L ++   MGV PD  +Y  L   + 
Sbjct: 470 LFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHC 529

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
            A   +   KLL+ M   G+ P+
Sbjct: 530 LAGTIDEASKLLEGMVSVGLKPD 552



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 148/369 (40%), Gaps = 54/369 (14%)

Query: 16  KLIAVMGKKGQTRL--AMWLFSEMRNSGCRPDPSV-YNALITAHLHTRDKAKALAKA--- 69
           ++IA   + G   L  A+ LF E+     RP   V +N L+ A   +  +    +++   
Sbjct: 17  RVIADRARSGSLGLGDALKLFDELLPHA-RPASVVAFNHLLAAVSRSSGRRSTTSESETV 75

Query: 70  LGYFQKMKGMERC----KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           +  F +M  +  C     PN  TY+IL+    +  +++   A F  + ++    D    N
Sbjct: 76  VSLFNRM--VRDCYIKVAPNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVIN 133

Query: 126 GVMDAYGKNGMIKE-MESVLSRMKSNQCKPDIITFNLL---------------------- 162
            +++       + E M+ +L RM    C PD +++N+L                      
Sbjct: 134 QLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMAD 193

Query: 163 ----------------IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
                           I+ +      DK   +F  +M     P + T+ ++I    KA+L
Sbjct: 194 DQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQL 253

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
             +AE VFQ+M      P+  TY C+I  Y           + +E+S  G      T  +
Sbjct: 254 FDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGS 313

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKRMEQN 325
           +L   C NG   EA   F++    G+ P  +TY ++   Y TK  + E+   LL  M  N
Sbjct: 314 LLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEM-HDLLNLMVAN 372

Query: 326 GIVPNKRFF 334
           GI PN   F
Sbjct: 373 GISPNHHIF 381



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 136/329 (41%), Gaps = 39/329 (11%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERCKPNIVTYN 90
           L+  M NSG + D   YN ++        K+  + +A+  FQ +  KG++    NI+T+N
Sbjct: 610 LYLNMINSGTKWDIYTYNIILNGLC----KSNCVDEAIKMFQNLCSKGLQL---NIITFN 662

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
           I++ A  +    +    LF  +  + L  ++ TY  V++   + G ++E +S+ S M+ N
Sbjct: 663 IMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKN 722

Query: 151 QCKPDIITFNLLIDSYGKRQAFDK----------------------MEQVFKSLMHSKEK 188
              P+    N L+     R    +                      +  +F S  +    
Sbjct: 723 GTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHA 782

Query: 189 PTLPTFNSMIINYG-------KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
            +LP     I+N         KAR    A  +F++M     TP  +TY  I+        
Sbjct: 783 KSLPK-KYRILNEANSSALIKKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGR 841

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
            S A+E++  +      M + T N +L   C +    EA  +F++  + G+  +  T+ +
Sbjct: 842 FSEAKELYLSMINSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNI 901

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +  A  K   KE    L   +  NG+VP+
Sbjct: 902 MIGALLKGGRKEDAMDLFAAIPANGLVPD 930



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 109/259 (42%), Gaps = 23/259 (8%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA------------------KALGYFQ 74
           LFS M  +G  P+  + NAL+   LH  D ++A A                    +  F 
Sbjct: 715 LFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFS 774

Query: 75  KMKGMERCKPNIVTYNILLRACA-----QARNVDQVNALFKELHESILAPDIYTYNGVMD 129
             +     K     Y IL  A +     +AR +D   +LF+E+    L PD+ TYN ++ 
Sbjct: 775 SDEYQHHAKSLPKKYRILNEANSSALIKKARRIDDAYSLFREMLMKGLTPDVVTYNTILH 834

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              + G   E + +   M +++ + +I T+N++++   K    D+  ++F+SL     + 
Sbjct: 835 GLFQTGRFSEAKELYLSMINSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQL 894

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + TFN MI    K   +  A  +F  + A    P  +TY  +        ++     +F
Sbjct: 895 NIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLF 954

Query: 250 DELSKLGKDMKVSTLNAML 268
             + K G  +    LNA++
Sbjct: 955 LTMEKSGTPLDSRLLNALV 973



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/326 (21%), Positives = 130/326 (39%), Gaps = 30/326 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI      G    A  L   M + G +PD   YN L    LH   KA  +  A  +F
Sbjct: 521 YNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTL----LHGYCKAGRIDSAYSHF 576

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KM       P +VTYN +L    Q +   +   L+  +  S    DIYTYN +++   K
Sbjct: 577 RKMLS-NGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCK 635

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +  + E   +   + S   + +IITFN++I +  K    +    +F ++  +     + T
Sbjct: 636 SNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVT 695

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +  ++ N  +     + + +F  M      P+      ++    +  ++SRA     +L 
Sbjct: 696 YRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLD 755

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           +    ++ ST + ++  +  +          E  H+    P        Y+   +AN   
Sbjct: 756 ERNFSVEASTTSMLISIFSSD----------EYQHHAKSLPKK------YRILNEANSSA 799

Query: 314 LVQK---------LLKRMEQNGIVPN 330
           L++K         L + M   G+ P+
Sbjct: 800 LIKKARRIDDAYSLFREMLMKGLTPD 825


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 144/335 (42%), Gaps = 5/335 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++  + K  + + A+ L  ++  +GC P  + YNAL    L+   K   L +A
Sbjct: 33  DIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNAL----LNGLCKMGRLEEA 88

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +   +K+     C P++VTY  L+    + +   +   LFKE+    LA D   Y  ++ 
Sbjct: 89  IDLLRKIVD-NGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIR 147

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              + G I +  SV   M S  C PD++T + +ID   K        ++FKS+      P
Sbjct: 148 GLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAP 207

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               ++++I    KAR    A  +  +M     TP  ITY  +I       +V+ AR  F
Sbjct: 208 NEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFF 267

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE+ + G    V T N ++  +C  G    A  +F++  +   +P+  TY  L     K 
Sbjct: 268 DEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKR 327

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
                     + M++ G  P+   +   ++    S
Sbjct: 328 RQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKS 362



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 146/320 (45%), Gaps = 10/320 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI  +GKK ++  A  LF EM + G   D   Y ALI   L    +A  + +A
Sbjct: 103 DVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLL----QAGKIPQA 158

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              ++ M   + C P++VT + ++    +A  +     +FK +    LAP+   Y+ ++ 
Sbjct: 159 SSVYKTMTS-QGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIH 217

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K   +     +L++MK   C PD IT+N+LID   K          F  ++ +  KP
Sbjct: 218 GLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKP 277

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRARE 247
            + T+N +I  + KA     A  VF  M++ + +P+ +TY  +I+  G C    +++A  
Sbjct: 278 DVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLIS--GLCKRRQLTKASL 335

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
            +  + + G        +++++  C +G      +LF+     GV    +  +L++    
Sbjct: 336 YYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFH-LC 394

Query: 308 KANMKELVQKLLKRMEQNGI 327
           KAN  +    L   + + G+
Sbjct: 395 KANRVDEAVSLFNAIRKEGM 414



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 134/316 (42%), Gaps = 9/316 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + K G+   A+ L  ++ ++GC PD   Y +LI        K K   +A   F
Sbjct: 72  YNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDG----LGKKKRSFEAYKLF 127

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           ++M  +G+     + V Y  L+R   QA  + Q ++++K +      PD+ T + ++D  
Sbjct: 128 KEMASRGLAL---DTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGL 184

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G I     +   M++    P+ + ++ LI    K +  D   ++   +  +   P  
Sbjct: 185 CKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDT 244

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+N +I    K+     A   F +M      P   TY  +I+ +    N   A  +FD+
Sbjct: 245 ITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDD 304

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +S       V T   ++   C     T+A L +++    G  PDS  Y  L     K+  
Sbjct: 305 MSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGK 364

Query: 312 KELVQKLLKRMEQNGI 327
            E    L   ME++G+
Sbjct: 365 LEGGCMLFDEMERSGV 380



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 12/205 (5%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D    S +I  + K G+   A+ +F  M   G  P+  VY+ALI    H   KA+ + 
Sbjct: 171 VPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALI----HGLCKARKMD 226

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            AL    +MK    C P+ +TYNIL+    ++ +V    A F E+ E+   PD+YTYN +
Sbjct: 227 CALEMLAQMK-KAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNIL 285

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  + K G       V   M S++C P+++T+  LI    KR+   K    ++   H KE
Sbjct: 286 ISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQ---HMKE 342

Query: 188 KPTLP---TFNSMIINYGKA-RLQG 208
           +   P    ++S++    K+ +L+G
Sbjct: 343 RGCPPDSFVYSSLVDGLCKSGKLEG 367



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 117/286 (40%), Gaps = 39/286 (13%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
           C  +I TY  ++   A+ + + +  AL +++  +   P I TYN +++   K G ++E  
Sbjct: 30  CTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAI 89

Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQ-----------------AFDKM--------- 175
            +L ++  N C PD++T+  LID  GK++                 A D +         
Sbjct: 90  DLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGL 149

Query: 176 ---------EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
                      V+K++      P + T ++MI    KA   G A  +F+ M A    P+ 
Sbjct: 150 LQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNE 209

Query: 227 ITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 284
           + Y  +I  +G C    +  A E+  ++ K        T N +++  C +G    A   F
Sbjct: 210 VVYSALI--HGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFF 267

Query: 285 ENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +     G  PD  TY +L   + KA   +    +   M  +   PN
Sbjct: 268 DEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPN 313



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 115/243 (47%)

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           T++IL+    +A  + Q ++L +E   +    DI+TY  ++D   KN  I+E  +++ ++
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
            +N C P I T+N L++   K    ++   + + ++ +   P + T+ S+I   GK +  
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            +A  +F++M +       + Y  +I        + +A  ++  ++  G    V TL+ M
Sbjct: 121 FEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTM 180

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           ++  C  G    A  +F++    G+ P+   Y  L     KA   +   ++L +M++   
Sbjct: 181 IDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFC 240

Query: 328 VPN 330
            P+
Sbjct: 241 TPD 243



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 21/222 (9%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+ +   DT  Y+ LI  + K G    A   F EM  +GC+PD   YN LI+       K
Sbjct: 236 KKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFC----K 291

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A     A G F  M    RC PN+VTY  L+    + R + + +  ++ + E    PD +
Sbjct: 292 AGNTDAACGVFDDMSS-SRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSF 350

Query: 123 TYNGVMDAYGKNG-------MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 175
            Y+ ++D   K+G       +  EME   S + ++Q +  +I F+L      K    D+ 
Sbjct: 351 VYSSLVDGLCKSGKLEGGCMLFDEMER--SGVANSQTRTRLI-FHLC-----KANRVDEA 402

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
             +F ++   +  P    +NS+I    K+    + + V+Q+M
Sbjct: 403 VSLFNAI-RKEGMPHPYAYNSIISALIKSGKVNEGQAVYQEM 443


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 151/355 (42%), Gaps = 51/355 (14%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           ++ DT  YS++I  +    +   A +LF EM+ +G  PD   Y  LI        KA  +
Sbjct: 485 FVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCF----SKAGII 540

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            +A  +  +M   + C+P +VTY  L+ A  +A+ V   N LF+ +      P++ TY  
Sbjct: 541 KQAHNWLDEMV-RDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTA 599

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQC----------------KPDIITFNLLIDSYGKRQ 170
           ++D Y K+G I++   + +RM+ +                  KP+++T+  L+D   K  
Sbjct: 600 LIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAH 659

Query: 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
                  + +++     +P    ++++I  + KA    +A+ VF KM    Y P+  TY 
Sbjct: 660 KVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYS 719

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC----------MNGLP--- 277
            +I      D + + + +         D+ +  L+ MLE  C          ++GL    
Sbjct: 720 SLI------DRLFKDKRL---------DLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVA 764

Query: 278 --TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              EA  L       G  P+  TY  +   + KA   +   +L + M   G  PN
Sbjct: 765 KTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPN 819



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 126/275 (45%), Gaps = 16/275 (5%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+  TY+ ++     A  V+    LFKE+  + + PD+YTY  ++D + K G+IK+  + 
Sbjct: 487 PDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNW 546

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L  M  + C+P ++T+  LI +Y K +      ++F+ ++     P + T+ ++I  Y K
Sbjct: 547 LDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCK 606

Query: 204 -----------ARLQGKAEY-----VFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
                      AR++G A+       F+    +   P+ +TY  ++        V  AR+
Sbjct: 607 SGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARD 666

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + + +   G +      +A+++ +C      EA  +F      G  P+  TY  L     
Sbjct: 667 LLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLF 726

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           K    +LV K+L +M +N   PN   + E ++  S
Sbjct: 727 KDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLS 761



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 145/330 (43%), Gaps = 33/330 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD--------------PSV--YNALITAHL 57
           Y+ LI    K G    A  +++ MR     PD              P+V  Y AL+    
Sbjct: 597 YTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLC 656

Query: 58  HTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
               KA  +  A    + M  ++ C+PN + Y+ L+    +A  +D+   +F ++ E   
Sbjct: 657 ----KAHKVKDARDLLETM-FVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGY 711

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
            P++YTY+ ++D   K+  +  +  VLS+M  N C P+I+ +  +ID   K    D+  +
Sbjct: 712 NPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYK 771

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           +   +     KP + T+ +MI  +GKA    K   +F++M +    P+F+TY  +I    
Sbjct: 772 LMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLI---- 827

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC--MNGLPTEADL---LFENSHNMGV 292
              N   A    DE   L ++MK +     + +YC  + G   E  L   L E     G 
Sbjct: 828 ---NHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGS 884

Query: 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
            P    YK+L   + KA   E+  +L K +
Sbjct: 885 APTILLYKVLIDNFVKAGRLEVALELHKEV 914



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 119/296 (40%), Gaps = 17/296 (5%)

Query: 44  PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD 103
           P+  +YN +I+       +A    +A+ +  +M+    C PN+ TY ILL  C   + + 
Sbjct: 306 PNTILYNKMISGLC----EASFFEEAMDFLNRMRSTS-CIPNVQTYRILLCGCLNKKQLG 360

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +   +   +      P    +N ++ AY K+        +L +M+  +CKP  + +N+LI
Sbjct: 361 RCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILI 420

Query: 164 DSYGKRQ------AFDKMEQVFKSLMHSK---EKPTLPTFNSMIINYGKARLQGKAEYVF 214
            S            F+  E+ +  ++ +     K  + +F   +  +GK     KA  V 
Sbjct: 421 GSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFE---KAYKVI 477

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
            +M    + P   TY  +I        V  A  +F E+   G    V T   +++ +   
Sbjct: 478 HEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKA 537

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           G+  +A    +     G  P   TY  L  AY KA    +  +L + M   G  PN
Sbjct: 538 GIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPN 593



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 142/336 (42%), Gaps = 23/336 (6%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           ++ +T +Y+K+I+ + +      AM   + MR++ C P+   Y  L+   L+        
Sbjct: 304 FVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNK------- 356

Query: 67  AKALGYFQKMKGM---ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            K LG  +++  M   E C P+   +N L+ A  ++ +      L K++ +    P    
Sbjct: 357 -KQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVV 415

Query: 124 YNGVMDAYGKNGMI------KEMESVLSRMKSNQC---KPDIITFNLLIDSYGKRQAFDK 174
           YN ++ +    G +      +  E   + M S      K ++++F   +  +GK   F+K
Sbjct: 416 YNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGK---FEK 472

Query: 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
             +V   +M +   P   T++ +I     A     A ++F++M      P   TY  +I 
Sbjct: 473 AYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILID 532

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
            +     + +A    DE+ + G +  V T   ++ AY      + A+ LFE     G  P
Sbjct: 533 CFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFP 592

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +  TY  L   Y K+   E   ++  RM  +  +P+
Sbjct: 593 NVITYTALIDGYCKSGNIEKACQIYARMRGDADIPD 628



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 154/365 (42%), Gaps = 39/365 (10%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I +   Y  L+     K Q      + S M   GC P  +++N+L+ A+  + D + A  
Sbjct: 340 IPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYA-- 397

Query: 68  KALGYFQKMKGMERC--KPNIVTYNILLRA-CAQARNVDQVN-ALFKELHESILAP---- 119
                ++ +K ME+C  KP  V YNIL+ + C+       V   L ++ +  +L+     
Sbjct: 398 -----YKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVL 452

Query: 120 ---DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
              ++ ++   +  +GK    ++   V+  M  N   PD  T++ +I         +   
Sbjct: 453 NKVNVVSFARCLCGFGK---FEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAF 509

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
            +FK +  +   P + T+  +I  + KA +  +A     +M      P+ +TY  +I  Y
Sbjct: 510 FLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAY 569

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-----------------LPTE 279
                VS A E+F+ +   G    V T  A+++ YC +G                 +P +
Sbjct: 570 LKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIP-D 628

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
            D+ F+  +N+   P+  TY  L     KA+  +  + LL+ M  +G  PN   +   ++
Sbjct: 629 VDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALID 688

Query: 340 TFSSS 344
            F  +
Sbjct: 689 GFCKA 693



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 125/272 (45%), Gaps = 19/272 (6%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R Y  +   YS LI  + K  +  L + + S+M  + C P+  +Y  +I       D  
Sbjct: 708 ERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMI-------DGL 760

Query: 64  KALAKALGYFQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
             +AK    ++ M  ME   CKPN+VTY  ++    +A  VD+   LF+E+     AP+ 
Sbjct: 761 SKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNF 820

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ---AFDKMEQV 178
            TY  +++     G + E  ++L  MK       + ++  +I+ Y KR+   +   +E+V
Sbjct: 821 VTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGY-KREFILSLGLLEEV 879

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKA-RLQGKAEYVFQKMTA-MKYTPSFITYECIITMY 236
            K    +   PT+  +  +I N+ KA RL+   E   + ++A M  T     Y  +I  +
Sbjct: 880 EK----NGSAPTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSF 935

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            Y   +  A E+F ++ + G    + T   +L
Sbjct: 936 SYASKIDHAFELFYDMIRDGVIPDLGTFVHLL 967



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 78/398 (19%), Positives = 154/398 (38%), Gaps = 49/398 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +Q  Y     +Y  L+ V  +    R+      E+R      D  V   L+   +    +
Sbjct: 163 RQIGYDHTPAVYIALLDVFERGSYDRVPEEFLREIRGD----DKEVLGKLLNVLIRKCCR 218

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
                 AL    ++K     KP  +TYN L++   +A  +D    + +E+ E  L+ D +
Sbjct: 219 NGLWNVALEELGRLKDFGY-KPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEF 277

Query: 123 T--------------------------------YNGVMDAYGKNGMIKEMESVLSRMKSN 150
           T                                YN ++    +    +E    L+RM+S 
Sbjct: 278 TLGFFAQALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRST 337

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
            C P++ T+ +L+     ++   + +++   ++     P+   FNS++  Y K+     A
Sbjct: 338 SCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYA 397

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK------LGKDMKVSTL 264
             + +KM   +  P ++ Y  +I     C        +  EL++      L     ++ +
Sbjct: 398 YKLLKKMEKCECKPGYVVYNILIG--SICSGGELPGPVTFELAEKAYNEMLSAGTVLNKV 455

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
           N +  A C+ G   + +  ++  H M   G  PD+STY  +      A+  E    L K 
Sbjct: 456 NVVSFARCLCGF-GKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKE 514

Query: 322 MEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTR 359
           M+  G+VP+   +   ++ FS +    Q+ +   ++ R
Sbjct: 515 MKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVR 552


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 144/325 (44%), Gaps = 11/325 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI    K  +   A  +   MR+    PD   YN +I   L +R K     K 
Sbjct: 153 DVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMI-GSLCSRGKLDLALKV 211

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L         + C+P ++TY IL+ A      VD+   L  E+    L PD++TYN ++ 
Sbjct: 212 LDQLLS----DNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIR 267

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K GM+     ++  ++   C+PD+I++N+L+ +   +  +++ E++   +   K  P
Sbjct: 268 GMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDP 327

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVSRAR 246
            + T++ +I    +    GK E     +  MK    TP   +Y+ +I  +     +  A 
Sbjct: 328 NVVTYSILITTLCR---DGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAI 384

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E  + +   G    +   N +L   C NG   +A  +F     +G +P+SS+Y  ++ A 
Sbjct: 385 EFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSAL 444

Query: 307 TKANMKELVQKLLKRMEQNGIVPNK 331
             +  K     ++  M  NGI P++
Sbjct: 445 WSSGDKIRALHMILEMVSNGIDPDE 469



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 155/348 (44%), Gaps = 9/348 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALG 71
           Y+ LI     +G    A+ L  EM + G +PD   YN +I         D+A  + + L 
Sbjct: 227 YTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNL- 285

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
              ++KG   C+P++++YNILLRA       ++   L  ++      P++ TY+ ++   
Sbjct: 286 ---ELKG---CEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTL 339

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            ++G I+E  ++L  MK     PD  +++ LI ++ +    D   +  ++++     P +
Sbjct: 340 CRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDI 399

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             +N+++    K     +A  +F K+  +  +P+  +Y  + +      +  RA  +  E
Sbjct: 400 VNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILE 459

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G D    T N+M+   C  G+  +A  L  +  +    P   TY ++   + KA+ 
Sbjct: 460 MVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHR 519

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTR 359
            E    +L  M  NG  PN+  +   +E    +   +++     DL R
Sbjct: 520 IEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVR 567



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 111/243 (45%), Gaps = 7/243 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI  + + G+   AM L   M+  G  PD   Y+ LI A      +   L  A+ + 
Sbjct: 332 YSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFC----REGRLDVAIEFL 387

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M   + C P+IV YN +L    +    DQ   +F +L E   +P+  +YN +  A   
Sbjct: 388 ETMIS-DGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWS 446

Query: 134 NG-MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           +G  I+ +  +L  M SN   PD IT+N +I    +    DK  ++   +   +  P++ 
Sbjct: 447 SGDKIRALHMIL-EMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVV 505

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N +++ + KA     A  V   M      P+  TY  +I   G+    + A E+ ++L
Sbjct: 506 TYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDL 565

Query: 253 SKL 255
            ++
Sbjct: 566 VRI 568



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/301 (20%), Positives = 129/301 (42%), Gaps = 6/301 (1%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           ++ L   M   G  PD  +   LI      R+  KA+ + +   +K       +P++  Y
Sbjct: 104 SLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAV-RVMEILEKFG-----QPDVFAY 157

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           N L+    +   +D    +   +     +PD  TYN ++ +    G +     VL ++ S
Sbjct: 158 NALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLS 217

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
           + C+P +IT+ +LI++       D+  ++   ++    KP + T+N++I    K  +  +
Sbjct: 218 DNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDR 277

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  + + +      P  I+Y  ++             ++  ++     D  V T + ++ 
Sbjct: 278 AFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILIT 337

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             C +G   EA  L +     G+TPD+ +Y  L  A+ +    ++  + L+ M  +G +P
Sbjct: 338 TLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLP 397

Query: 330 N 330
           +
Sbjct: 398 D 398



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 105/231 (45%), Gaps = 19/231 (8%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           + K++    D   Y  LIA   ++G+  +A+     M + GC PD   YN ++ A L   
Sbjct: 354 LMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVL-ATLCKN 412

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            KA    +AL  F K+ G   C PN  +YN +  A   + +  +   +  E+  + + PD
Sbjct: 413 GKAD---QALEIFGKL-GEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPD 468

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TYN ++    + GM+ +   +L  M+S +  P ++T+N+++  + K    +    V  
Sbjct: 469 EITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLD 528

Query: 181 SLMHSKEKPTLPTFNSMIINYGKA--------------RLQGKAEYVFQKM 217
           S++ +  +P   T+  +I   G A              R+   +EY F+++
Sbjct: 529 SMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRINAISEYSFKRL 579


>gi|15240649|ref|NP_199839.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170477|sp|Q9FGR7.1|PP426_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g50280, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 1006; Flags: Precursor
 gi|9759030|dbj|BAB09399.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008538|gb|AED95921.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 723

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 151/321 (47%), Gaps = 6/321 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           ++  L+     +G    A+ + +EM   G R +  VYN L+ A+    +K+  + +  G 
Sbjct: 346 VFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAY----NKSNHIEEVEGL 401

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F +M+  +  KP+  TYNIL+ A A+    D V  L +E+ +  L P++ +Y  ++ AYG
Sbjct: 402 FTEMRD-KGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYG 460

Query: 133 KNGMIKEMES-VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           +   + +M +    RMK    KP   ++  LI +Y      +K    F+ +     KP++
Sbjct: 461 RTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSV 520

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+ S++  + ++   GK   +++ M   K   + ITY  ++  +        AR++  E
Sbjct: 521 ETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSE 580

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
            SK+G    V T N ++ AY   G   +   L +    + + PDS TY  +  A+ +   
Sbjct: 581 FSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRD 640

Query: 312 KELVQKLLKRMEQNGIVPNKR 332
            +      K M ++G VP+ R
Sbjct: 641 FKRAFFYHKMMVKSGQVPDPR 661



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 136/297 (45%), Gaps = 7/297 (2%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S L  ++G++      + L S + +     D  +YNA I+        ++    A   ++
Sbjct: 242 SVLFTLLGRERMADYILLLLSNLPDKEEFRDVRLYNAAISG----LSASQRYDDAWEVYE 297

Query: 75  KMKGMERCKPNIVTYNILLRACAQA-RNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            M  +    P+ VT  IL+    +A R+  +V  +F+++ E  +      + G++ ++  
Sbjct: 298 AMDKIN-VYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSFCD 356

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G+ +E   + + M+    + + I +N L+D+Y K    +++E +F  +     KP+  T
Sbjct: 357 EGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAAT 416

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR-AREIFDEL 252
           +N ++  Y +       E + ++M  +   P+  +Y C+I+ YG    +S  A + F  +
Sbjct: 417 YNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRM 476

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            K+G      +  A++ AY ++G   +A   FE     G+ P   TY  +  A+ ++
Sbjct: 477 KKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRS 533


>gi|255661216|gb|ACU25777.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 426

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 153/327 (46%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +  +L  E+  + + PD  
Sbjct: 61  SKAIS----IFSRLK-RSGITPDLVAYNSMINVFGKAKLFKEARSLISEMRVAGVMPDTV 115

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV   M+   C  D+ T N++ID YG+     + +++F S+
Sbjct: 116 SYSTILTMYVENHKFLEALSVFREMREINCLLDLTTCNIMIDVYGQLDMAKEADRLFWSM 175

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG     
Sbjct: 176 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEH 235

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + GV  D   Y+ +
Sbjct: 236 EKANNLIQEMQNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTM 295

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  +++   +P
Sbjct: 296 IVAYERAGLVAHAKRLLHELKRPDNIP 322



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 108/217 (49%)

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
           E  L+PD YTY+ ++  +GK G+  +  S L +M+ ++   D++ ++ LI+   K   + 
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           K   +F  L  S   P L  +NSMI  +GKA+L  +A  +  +M      P  ++Y  I+
Sbjct: 62  KAISIFSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLISEMRVAGVMPDTVSYSTIL 121

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
           TMY        A  +F E+ ++   + ++T N M++ Y    +  EAD LF +   MG+ 
Sbjct: 122 TMYVENHKFLEALSVFREMREINCLLDLTTCNIMIDVYGQLDMAKEADRLFWSMRKMGIE 181

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 218



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 143/319 (44%), Gaps = 9/319 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  YS ++ +  +  +   A+ +F EMR   C  D +  N +I  +    D AK   + 
Sbjct: 113 DTVSYSTILTMYVENHKFLEALSVFREMREINCLLDLTTCNIMIDVYGQL-DMAKEADRL 171

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               +KM G+E   PN+V+YN LLR    A    +   LF+ +    +  ++ TYN +M 
Sbjct: 172 FWSMRKM-GIE---PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMM 227

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YGK    ++  +++  M++   +P+ IT++ +I  +GK    D+   +F+ L  S  + 
Sbjct: 228 IYGKTLEHEKANNLIQEMQNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEI 287

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               + +MI+ Y +A L   A+ +  ++      P  I  +  I +      +  A  +F
Sbjct: 288 DQVLYQTMIVAYERAGLVAHAKRLLHELK----RPDNIPRDTAIHILAGAGRIEEATWVF 343

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            +    G+   ++    M++ +      T    +FE    +G  PDS+   L+  AY K 
Sbjct: 344 RQAIDAGEVKDITVFERMIDLFSKYRKYTNVGEVFEKMRGLGYFPDSNVIALVLNAYGKL 403

Query: 310 NMKELVQKLLKRMEQNGIV 328
           +  +   ++   M+  G V
Sbjct: 404 HEFDKANEVYMEMQDEGCV 422


>gi|449530353|ref|XP_004172160.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like, partial [Cucumis sativus]
          Length = 312

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 133/258 (51%), Gaps = 8/258 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++  Y  D   Y+ L+    + G    A  +FS M++ GC PD + YN ++ A+     +
Sbjct: 58  QEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAY----GR 113

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A     A   F++MK +    P + ++ +LL A + A NV +   +  ++H+S L PD +
Sbjct: 114 AGLHEDAQAVFEEMKRI-GITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTF 172

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
             N +++ YG+ G   +ME + S M+   C+ DI T+N+LI+ YG+    ++ME++F+ L
Sbjct: 173 VMNSMLNLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLL 232

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + T+ S I  Y + +L  +   +F+KM      P   T + +++    C + 
Sbjct: 233 PAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAKVLLSA---CSSE 289

Query: 243 SRAREIFDELSKLGKDMK 260
            +  ++ + +  + KD+K
Sbjct: 290 EQIEQVTNVVRTMHKDLK 307



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 125/288 (43%), Gaps = 36/288 (12%)

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F +M+  +RCKPNI T+  L+ A A+    ++   +F+++ E+   PD+Y YN +M++Y 
Sbjct: 19  FDEMR-TQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYS 77

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL---------- 182
           + G       + S M+   C+PD  ++N+++D+YG+    +  + VF+ +          
Sbjct: 78  RAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMK 137

Query: 183 ------------------------MH-SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
                                   MH S  KP     NSM+  YG+    GK E +F  M
Sbjct: 138 SHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTM 197

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
                     TY  +I +YG    V R  E+F  L     +  V T  + + AY    L 
Sbjct: 198 QKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLY 257

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
                LFE   + G  PD  T K+L  A +     E V  +++ M ++
Sbjct: 258 KRCLELFEKMIDAGCYPDGGTAKVLLSACSSEEQIEQVTNVVRTMHKD 305



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 120/243 (49%), Gaps = 5/243 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L+  + ++G    A  +F +M+ +G  PD   YNAL+ ++     +A     A   F
Sbjct: 34  FTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESY----SRAGFPYGAAEIF 89

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             M+ M  C+P+  +YNI++ A  +A   +   A+F+E+    + P + ++  ++ AY  
Sbjct: 90  SLMQHM-GCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSS 148

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + + E ++ +M  +  KPD    N +++ YG+   F KME +F ++     +  + T
Sbjct: 149 AGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPCRADIST 208

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N +I  YG+A    + E +FQ + A    P  +T+   I  Y       R  E+F+++ 
Sbjct: 209 YNILINVYGRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMI 268

Query: 254 KLG 256
             G
Sbjct: 269 DAG 271



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 69/135 (51%)

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A+ +F +M   +  P+  T+  ++          +A EIF+++ + G +  V   NA++E
Sbjct: 15  AQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALME 74

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           +Y   G P  A  +F    +MG  PD ++Y ++  AY +A + E  Q + + M++ GI P
Sbjct: 75  SYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITP 134

Query: 330 NKRFFLEALETFSSS 344
             +  +  L  +SS+
Sbjct: 135 TMKSHMLLLSAYSSA 149


>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g15630, mitochondrial; Flags: Precursor
 gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 154/345 (44%), Gaps = 16/345 (4%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K + +  D   Y+ +++ M  +G+   A  +  EM+  G  PD   YN LI    +  D 
Sbjct: 287 KSKGFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVSYNILIRGCSNNGD- 342

Query: 63  AKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
              L  A  Y  +M  +GM    P   TYN L+        ++    L +E+ E  +  D
Sbjct: 343 ---LEMAFAYRDEMVKQGM---VPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLD 396

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TYN +++ Y ++G  K+  ++   M ++  +P   T+  LI    ++    + +++F+
Sbjct: 397 SVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFE 456

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++    KP L   N+++  +       +A  + ++M  M   P  +TY C+  M G C 
Sbjct: 457 KVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCL--MRGLCG 514

Query: 241 N--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
                 ARE+  E+ + G      + N ++  Y   G    A ++ +   ++G  P   T
Sbjct: 515 EGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLT 574

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
           Y  L K  +K    EL ++LL+ M+  GIVPN   F   +E  S+
Sbjct: 575 YNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSN 619



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 133/314 (42%), Gaps = 11/314 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+   + D+  Y+ LI      G   +A     EM   G  P    YN LI   L   +K
Sbjct: 319 KEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHG-LFMENK 377

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +A A+ L    + KG+     + VTYNIL+    Q  +  +  AL  E+    + P  +
Sbjct: 378 IEA-AEILIREIREKGIVL---DSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQF 433

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++    +    +E + +  ++     KPD++  N L+D +      D+   + K +
Sbjct: 434 TYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEM 493

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYC 239
                 P   T+N ++        +GK E   + M  MK     P  I+Y  +I+ Y   
Sbjct: 494 DMMSINPDDVTYNCLMRGLCG---EGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKK 550

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            +   A  + DE+  LG +  + T NA+L+    N     A+ L     + G+ P+ S++
Sbjct: 551 GDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSF 610

Query: 300 KLLYKAYTKANMKE 313
             + +A +  + K+
Sbjct: 611 CSVIEAMSNLDAKK 624



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 130/330 (39%), Gaps = 22/330 (6%)

Query: 18  IAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG------ 71
           IAV+ K    +    L  E+  S      ++++ L+ AH     K+  L   L       
Sbjct: 109 IAVISKLSSPKPVTQLLKEVVTSRKNSIRNLFDELVLAHDRLETKSTILFDLLVRCCCQL 168

Query: 72  ----------YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
                     Y  K KG     P   T N +L   ++   ++     + +++   +  ++
Sbjct: 169 RMVDEAIECFYLMKEKGF---YPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNV 225

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           YT+N +++   K G +K+ +  L  M+    KP I+T+N L+  +  R   +    +   
Sbjct: 226 YTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISE 285

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           +     +P + T+N ++        +G+A  V ++M  +   P  ++Y  +I       +
Sbjct: 286 MKSKGFQPDMQTYNPILSWMCN---EGRASEVLREMKEIGLVPDSVSYNILIRGCSNNGD 342

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +  A    DE+ K G      T N ++    M      A++L       G+  DS TY +
Sbjct: 343 LEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNI 402

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           L   Y +    +    L   M  +GI P +
Sbjct: 403 LINGYCQHGDAKKAFALHDEMMTDGIQPTQ 432


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 148/331 (44%), Gaps = 12/331 (3%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           L AV+  K   ++A  +F EM  SG  P+   YN LI         A  L   L +F +M
Sbjct: 174 LDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFC----TAGNLEMGLFFFGEM 229

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +    C PN+VTYN ++ A  + R + +   L + +    L P++ +YN V++   + G 
Sbjct: 230 E-RNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQ 288

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           +KE   +L  M   +  PD +TFN LI+ Y     F +   +   ++ +   P + T+ +
Sbjct: 289 MKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTT 348

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           +I +  KA    +A     +M      P+  TY  +I  +     + +A +I  E+ + G
Sbjct: 349 LINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENG 408

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
               + T NA++  +C+ G   +A  L +     G  PD  +Y  +   + +    E   
Sbjct: 409 FTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAF 468

Query: 317 KLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
           +L   M   GI P+       + T+SS + G
Sbjct: 469 QLKVEMVAKGISPD-------VATYSSLIQG 492



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 148/349 (42%), Gaps = 34/349 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL------- 66
           Y+ LI      G   + ++ F EM  +GC P+   YN +I A+   R   +A        
Sbjct: 206 YNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMA 265

Query: 67  -----AKALGYFQKMKGM------------------ERCKPNIVTYNILLRACAQARNVD 103
                   + Y   + G+                   R  P+ VT+N L+       N  
Sbjct: 266 LKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFH 325

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           Q   L  E+ ++ L+P++ TY  ++++  K G +      L +M+     P+  T+  LI
Sbjct: 326 QALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLI 385

Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
           D + ++    +  Q+ K ++ +   PT+ T+N++I  +        A  + Q+M    + 
Sbjct: 386 DGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFI 445

Query: 224 PSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
           P  ++Y  II+  G+C N  + +A ++  E+   G    V+T +++++  C      E  
Sbjct: 446 PDVVSYSTIIS--GFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVC 503

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            LF+   ++G+ PD  TY  L  AY      +   +L   M Q G  P+
Sbjct: 504 DLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPD 552



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 135/301 (44%), Gaps = 4/301 (1%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ + +  ++ G  P    YNA++ A + T+   K    A G F++M       PN+ TY
Sbjct: 151 ALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKI---AEGIFKEMVE-SGVSPNVYTY 206

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           NIL+R    A N++     F E+  +   P++ TYN ++DAY K   I E   +L  M  
Sbjct: 207 NILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMAL 266

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
               P++I++N++I+   +     +  ++ + +   +  P   TFN++I  Y       +
Sbjct: 267 KGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQ 326

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  +  +M     +P+ +TY  +I       N++RA E  D++   G      T   +++
Sbjct: 327 ALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLID 386

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
            +   G   +A  + +     G TP   TY  L   +      E    LL+ M + G +P
Sbjct: 387 GFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIP 446

Query: 330 N 330
           +
Sbjct: 447 D 447



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 154/377 (40%), Gaps = 55/377 (14%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R Y+ D   ++ LI      G    A+ L +EM  +G  P+   Y  LI +      KA
Sbjct: 301 KRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMC----KA 356

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L +A+ +  +M+      PN  TY  L+   +Q   + Q   + KE+ E+   P I T
Sbjct: 357 GNLNRAMEFLDQMRD-RGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIIT 415

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN +++ +   G +++   +L  M      PD+++++ +I  + + Q  +K  Q+   ++
Sbjct: 416 YNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMV 475

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                P + T++S+I    K R  G+   +FQ+M ++   P  +TY  +I  Y    ++ 
Sbjct: 476 AKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLD 535

Query: 244 RAREIFDELSKLGKDMKVSTLN-------------------------------------- 265
           +A  + DE+ + G    + T N                                      
Sbjct: 536 KALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLI 595

Query: 266 ------------AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
                       A+++ +CM GL  EAD + E+    G   +   Y ++   ++K    E
Sbjct: 596 DNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIE 655

Query: 314 LVQKLLKRMEQNGIVPN 330
               L K M  +G  P+
Sbjct: 656 KAYNLYKEMLHSGFAPH 672



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 119/265 (44%), Gaps = 5/265 (1%)

Query: 81  RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-IKE 139
           +CK +   +++++++CA+   +++  ++          P + +YN ++DA  +    +K 
Sbjct: 127 QCKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKI 186

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
            E +   M  +   P++ T+N+LI  +      +     F  +  +   P + T+N++I 
Sbjct: 187 AEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIID 246

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGK 257
            Y K R  G+A  + + M      P+ I+Y  +I   G C    +    EI +E+SK   
Sbjct: 247 AYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVIN--GLCREGQMKETSEILEEMSKRRY 304

Query: 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
                T N ++  YC  G   +A +L       G++P+  TY  L  +  KA       +
Sbjct: 305 VPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAME 364

Query: 318 LLKRMEQNGIVPNKRFFLEALETFS 342
            L +M   G+ PN R +   ++ FS
Sbjct: 365 FLDQMRDRGLHPNGRTYTTLIDGFS 389


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 141/333 (42%), Gaps = 4/333 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  ++  +  +G+   A+ +  EMR  GC P P +Y+ ++ A   +R        A+   
Sbjct: 118 YFPVVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILEAAC-SRGGGGGFRSAVRVL 176

Query: 74  QKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESI-LAPDIYTYNGVMDAY 131
           Q + G   C  ++   N++L A C Q  +VD+   L ++L  S    PD+ +YN V+   
Sbjct: 177 QDLHG-RGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGL 235

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
                   ++ ++  M    C P+++TFN LI    +   F+++ QV   ++     P +
Sbjct: 236 CMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDI 295

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             + +++    K      A  +  +M +    P+ + Y  ++      +   +A E+  E
Sbjct: 296 RMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAE 355

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +      +   T N +++ +C NGL      L E     G  PD  TY  +   + K  +
Sbjct: 356 MFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGL 415

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            +    LLK M   G  PN   +   L+   S+
Sbjct: 416 IDEAVMLLKSMAACGCRPNTISYTIVLKGLCSA 448



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 147/357 (41%), Gaps = 51/357 (14%)

Query: 19  AVMGKKGQTRLAMWLFSEMRNS-GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQK-M 76
           AV  + G    A+ L  ++  S GC PD   YNA++        K   +AK  G  Q  M
Sbjct: 197 AVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVL--------KGLCMAKRWGRVQDLM 248

Query: 77  KGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
           + M R  C PN+VT+N L+    +    ++V+ +  ++ +    PDI  Y  V+D   K 
Sbjct: 249 EEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKE 308

Query: 135 GMIKEMESVLSRMKS-----------------------------------NQCKPDIITF 159
           G ++    +L RM S                                   N C  D +TF
Sbjct: 309 GHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTF 368

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
           N+L+D + +     ++ ++ + ++     P + T+ ++I  + K  L  +A  + + M A
Sbjct: 369 NILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAA 428

Query: 220 MKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
               P+ I+Y   I + G C  +    A ++  ++ + G      T N ++   C  GL 
Sbjct: 429 CGCRPNTISYT--IVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLV 486

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            +A  L +     G +PD  +Y  +     KA   +   +LL  M   G+ PN   +
Sbjct: 487 EQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIY 543



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/339 (20%), Positives = 143/339 (42%), Gaps = 15/339 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ ++  + K+G   +A  +   M + G +P+   YN ++          K L  A
Sbjct: 294 DIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVL----------KGLCSA 343

Query: 70  LGYFQKMKGMER-----CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
             + Q  + +       C  + VT+NIL+    Q   V +V  L +++ E    PD+ TY
Sbjct: 344 ERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITY 403

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
             V++ + K G+I E   +L  M +  C+P+ I++ +++      + +   E +   ++ 
Sbjct: 404 TTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIE 463

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P   TFN++I    K  L  +A  + ++M     +P  I+Y  +I   G       
Sbjct: 464 QGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDE 523

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A E+ + +   G        +++  A    G       +F+N  ++ +  D+  Y  +  
Sbjct: 524 ALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVIS 583

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
           +  K    +   + L  M  +G +PN+  +   +   +S
Sbjct: 584 SLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLAS 622



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 106/254 (41%), Gaps = 15/254 (5%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ +I    K+G    A+ L   M   GCRP+   Y  ++          K L 
Sbjct: 397 VPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVL----------KGLC 446

Query: 68  KALGYFQKMKGMER-----CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            A  +      M +     C PN VT+N ++    +   V+Q   L K++  +  +PD+ 
Sbjct: 447 SAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLI 506

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ V+D  GK G   E   +L+ M +    P+ I ++ +  +  K    +++ Q+F ++
Sbjct: 507 SYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNI 566

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +     +N++I +  K     +A      M +    P+  TY  +I        V
Sbjct: 567 QDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEGFV 626

Query: 243 SRAREIFDELSKLG 256
             A+E+  EL   G
Sbjct: 627 KEAQEMLTELCSKG 640



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/234 (20%), Positives = 92/234 (39%), Gaps = 7/234 (2%)

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           + P+ YTY  V+ A    G I +  SVL  M+   C P    +++++++   R       
Sbjct: 111 VPPNAYTYFPVVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFR 170

Query: 177 QVFKSL--MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM----TAMKYTPSFITYE 230
              + L  +H +    L   N  ++        G  +   + +    T+    P  ++Y 
Sbjct: 171 SAVRVLQDLHGR-GCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYN 229

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
            ++          R +++ +E+ ++G    V T N ++   C NGL      +     + 
Sbjct: 230 AVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDH 289

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           G TPD   Y  +     K    E+  ++L RM   G+ PN   +   L+   S+
Sbjct: 290 GCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSA 343


>gi|410110103|gb|AFV61131.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           alba]
          Length = 419

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 141/302 (46%), Gaps = 5/302 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF EMR     PD   Y+ LIT H     K      AL + QKM+  +R   ++V Y+ L
Sbjct: 2   LFDEMRQRALSPDRYTYSTLIT-HF---GKEGLFDAALSWLQKME-QDRVPGDLVLYSNL 56

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +  +  +  A+F  L  S   PD+  YN +++ +GK  + +E  S++  MK+   
Sbjct: 57  IELSRKLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGV 116

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+  +  +A+ 
Sbjct: 117 MPNTSSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 176

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T N+M+  Y 
Sbjct: 177 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 236

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
                 +A+ L +   + G+ P+S TY  +   + K    +    L +++  +G+  ++ 
Sbjct: 237 KTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQI 296

Query: 333 FF 334
            F
Sbjct: 297 LF 298



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 154/327 (47%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 7   RQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 66

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA+A     F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  
Sbjct: 67  SKAIA----IFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTS 121

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 181

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG     
Sbjct: 182 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 241

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + GV  D   ++ +
Sbjct: 242 EKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTM 301

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  +++   +P
Sbjct: 302 IVAYERAGLVAHAKRLLHELKRPDNIP 328



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 140/340 (41%), Gaps = 42/340 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L  EM+ +G  P+ S Y+ L+T ++     
Sbjct: 77  KRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTSSYSTLLTMYVEN--- 133

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 134 -KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 192

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 193 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 252

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           S   +P+ IT++ +I  +GK    D+   +F+ L  S  +     F +MI+ Y +A L  
Sbjct: 253 SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVA 312

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++      P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 313 HAKRLLHELK----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMI 368

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
                         +F+    +G  PDS+   ++  AY K
Sbjct: 369 HLLSKYKKYXNVVEVFDKMRGLGYFPDSNVIAVVLNAYGK 408



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 111/259 (42%), Gaps = 35/259 (13%)

Query: 107 ALFKELHESILAPDIYTYNGVMDAYGKNGM-------IKEME------------------ 141
            LF E+ +  L+PD YTY+ ++  +GK G+       +++ME                  
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60

Query: 142 ----------SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
                     ++ SR+K +   PD++ +N +I+ +GK + F +   +   +  +   P  
Sbjct: 61  RKLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNT 120

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            ++++++  Y + +   +A  VF +M  +K      T   +I +YG       A ++F  
Sbjct: 121 SSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + K+G +  V + N +L  Y    L  EA  LF       +  +  TY  +   Y K   
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLE 240

Query: 312 KELVQKLLKRMEQNGIVPN 330
            E    L++ M+  GI PN
Sbjct: 241 HEKANNLIQEMQSRGIEPN 259



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 79/166 (47%), Gaps = 9/166 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I++ GK G+   A  LF ++R+SG   D  ++  +I A+    ++A  +A A    
Sbjct: 263 YSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY----ERAGLVAHAKRLL 318

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++K     +P+ +  +  +   A A  +++   +F++  ++    DI  +  ++    K
Sbjct: 319 HELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSK 373

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
                 +  V  +M+     PD     +++++YGK Q FDK   V+
Sbjct: 374 YKKYXNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVY 419


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 175/368 (47%), Gaps = 23/368 (6%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R    D  +Y+ LI  + + G+ + A  +   M   G  P+   YN LI +      K  
Sbjct: 193 RGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMC----KEG 248

Query: 65  ALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL--HESILAPD 120
           ++ +AL   + M  KG++   P++VTYN L+   +    +D+  AL +E+   E+ + PD
Sbjct: 249 SVREALDLRKNMSEKGVQ---PDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPD 305

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + T+N V+    K G +++   V + M  N C+ +++ FNLLI    +     K  ++  
Sbjct: 306 LMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMD 365

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +  S  +P   T++ +I  + K R   +AE    +M      P  + Y  I  +   CD
Sbjct: 366 EMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHY--IPLLKAMCD 423

Query: 241 N--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              + +AR++F+E+ +  K +  +  + M+     +G    A+   ++  + G+ PD+ T
Sbjct: 424 QGMMGQARDLFNEMDRNCK-LDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVT 482

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKT-DL 357
           Y +    + K+      +++LK+M  +G VP+   F   ++ +     G++  + K  +L
Sbjct: 483 YSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGY-----GAKGDTEKILEL 537

Query: 358 TRSLSTAK 365
           TR + TAK
Sbjct: 538 TREM-TAK 544



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/378 (21%), Positives = 154/378 (40%), Gaps = 53/378 (14%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS---GCRPDPSVYNALITAHLHTRDKAK 64
           + D   Y+ ++A + ++G    A++L   M +      RP+   Y  L+ A    R  A+
Sbjct: 53  VRDAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQ 112

Query: 65  ALAKALGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A+         ++ M+ C  +P++VTY  L+R    A +VD    L  E+ ES + P++ 
Sbjct: 113 AVGL-------LRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVV 165

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            Y+ ++  Y K G  + +  V   M     +PD++ +  LIDS  +     K  +V   +
Sbjct: 166 VYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMM 225

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + T+N +I +  K     +A  + + M+     P  +TY  +IT       +
Sbjct: 226 TERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEM 285

Query: 243 SRAREIFDEL----SKLGKDMKVSTLNAMLEAYCMNGLPTEA----DLLFENS------- 287
             A  + +E+    +++  D+   T N+++   C  G   +A     ++ EN        
Sbjct: 286 DEAMALLEEMMQGETRVRPDLM--TFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVA 343

Query: 288 -----------HNM-------------GVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
                      H +             G+ PDS TY +L   + K    E  +  L  M 
Sbjct: 344 FNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMR 403

Query: 324 QNGIVPNKRFFLEALETF 341
             G+ P    ++  L+  
Sbjct: 404 HQGMEPEPVHYIPLLKAM 421



 Score = 45.1 bits (105), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 78/185 (42%), Gaps = 18/185 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  L+  M  +G    A  LF+EM +  C+ D + Y+ +I     + +K     K    F
Sbjct: 414 YIPLLKAMCDQGMMGQARDLFNEM-DRNCKLDAAAYSTMIHGAFKSGEK-----KIAEEF 467

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K    E   P+ VTY+I +   A++ ++     + K++  S   PD+  ++ ++  YG 
Sbjct: 468 LKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGA 527

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G  +++  +   M +     D    + ++ S G      K+ Q            +LP 
Sbjct: 528 KGDTEKILELTREMTAKDVALDPKIISTIVTSLGASIEGQKLLQ------------SLPG 575

Query: 194 FNSMI 198
           F++ I
Sbjct: 576 FDTEI 580


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 144/344 (41%), Gaps = 27/344 (7%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAM------WLFSEMRNSGCR-----------PDPSVYNA 51
           AD   +S +I ++ KKG    A          S M +  C+           P   ++N 
Sbjct: 247 ADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNT 306

Query: 52  LITAHLHTRDKAKALAKALGYFQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALF 109
           LI    H   K+K L   +  FQ+MK M+   C PN+ TYNI++    +A+ +D+   L 
Sbjct: 307 LI----HAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELV 362

Query: 110 KELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR 169
            E+    L+PD+ TY+ ++D   K G +     +L  M      PD  T   ++++  K 
Sbjct: 363 NEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKA 422

Query: 170 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
              D      +++      P L T+N+++    KA    +A     KM A K TP   +Y
Sbjct: 423 GKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSY 482

Query: 230 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289
             IIT        + A  IF E+ K G        +++L+    NGL    DL  E    
Sbjct: 483 TIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLE---DLALELLKT 539

Query: 290 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
               PD   +K++     KA   E   ++++RM   G  P   F
Sbjct: 540 SLCKPDFVMHKMVLDGLCKAGKAEDACEVVERMADAGF-PADAF 582



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/383 (21%), Positives = 151/383 (39%), Gaps = 59/383 (15%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R Y  D   YS ++  + K G+   A  L  ++R SG + +   Y+ +I        K
Sbjct: 65  QRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCC----K 120

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A  +  AL  F+ M     C P++VT+N LL+       + +   LF+ + ++   P++ 
Sbjct: 121 ASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVI 180

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF----------------------- 159
           +Y+ ++D   K G + E   +   M    C PD++ +                       
Sbjct: 181 SYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKM 240

Query: 160 -----------------------------NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
                                        N +I+   +    D+  + F+ ++     P+
Sbjct: 241 VTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPS 300

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVSRARE 247
              FN++I    K++       +FQ+M +MK     P+  TY  ++        +  A+E
Sbjct: 301 AELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQE 360

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + +E++  G    V T +A+++  C  G    A  L E     GV PDS T   +  A +
Sbjct: 361 LVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALS 420

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           KA   +     L+ M+  G  P+
Sbjct: 421 KAGKVDYALSHLETMKARGSTPD 443



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/351 (19%), Positives = 142/351 (40%), Gaps = 29/351 (8%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L+  + K G+   A  L+ EM    C PD   Y + +T       KA  +A+A    
Sbjct: 182 YSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLC----KANRVAEACDCC 237

Query: 74  QKM--KGMERCKPNIVTY-----------------NILLRACAQARNVDQVNALFKELHE 114
           +KM  KG    K + V +                 N ++    ++  +D+    F+E+  
Sbjct: 238 RKMVTKGS---KADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMIS 294

Query: 115 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ---CKPDIITFNLLIDSYGKRQA 171
               P    +N ++ A  K+  + +   +  RMKS +   C P++ T+N+++D+  K + 
Sbjct: 295 RNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQ 354

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
            D+ +++   + +    P + T+++++    K     +A  + ++M+     P   T   
Sbjct: 355 LDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDAS 414

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           I+        V  A    + +   G    + T N +L+  C  G   EA           
Sbjct: 415 ILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAK 474

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            TPD  +Y ++  A  ++        + + M + G++P+   +   L+  +
Sbjct: 475 CTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLA 525



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 107/252 (42%), Gaps = 22/252 (8%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD----PSVYNALITAHLHTRDKAKA 65
           D   YS L+  + K G+   A  L  EM   G  PD     S+ NAL         KA  
Sbjct: 373 DVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNAL--------SKAGK 424

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           +  AL + + MK      P++VTYN LL    +A  +D+      ++  +   PD+++Y 
Sbjct: 425 VDYALSHLETMKARGS-TPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYT 483

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++ A  ++G      ++   M      PD + ++ L+D   +    D   ++ K+   S
Sbjct: 484 IIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKT---S 540

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAE---YVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
             KP       ++    KA   GKAE    V ++M    +     TY  +++       V
Sbjct: 541 LCKPDFVMHKMVLDGLCKA---GKAEDACEVVERMADAGFPADAFTYISVVSGLRKLGKV 597

Query: 243 SRAREIFDELSK 254
            +AR++ D+ S+
Sbjct: 598 DKARQLVDDASE 609



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 97/211 (45%), Gaps = 11/211 (5%)

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           K   + +   +  + KG +    ++ TYN  L A A+A         F+++      PD 
Sbjct: 17  KISTIVRLFDWLGRQKGYQH---SVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDD 73

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           +TY+ V+    K G + + + +L +++ +  K ++IT++++ID   K    D   ++FK+
Sbjct: 74  FTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKT 133

Query: 182 LMHSKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           +       P + TFNS++          +A  +F+ M      P+ I+Y  ++      D
Sbjct: 134 MSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLL------D 187

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
            + +A  + DE  +L ++M   +    L AY
Sbjct: 188 GLCKAGRL-DEACRLWEEMVEKSCVPDLVAY 217



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 74/178 (41%), Gaps = 12/178 (6%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K R    D   Y+ L+  + K G+   A+   ++M  + C PD   Y  +ITA   +   
Sbjct: 436 KARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQA 495

Query: 63  AKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           A A A     FQ+M  +G+    P+ V Y+ LL   A+    D    L K    S+  PD
Sbjct: 496 AGAHA----IFQEMVKRGV---LPDTVLYHSLLDGLARNGLEDLALELLKT---SLCKPD 545

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
              +  V+D   K G  ++   V+ RM       D  T+  ++    K    DK  Q+
Sbjct: 546 FVMHKMVLDGLCKAGKAEDACEVVERMADAGFPADAFTYISVVSGLRKLGKVDKARQL 603


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 151/341 (44%), Gaps = 15/341 (4%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           ++ D   Y  LI  +  +G    A+ LF+E +  G +PD  VYN+L+        K   L
Sbjct: 322 FVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLV--------KGLCL 373

Query: 67  -AKALGYFQKMKGM--ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
               L   Q M  M  E C P+I TYNI++    +  N+     +  +       PD++T
Sbjct: 374 QGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFT 433

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           +N ++D Y K   +     ++ RM      PD IT+N +++   K    +++ + F+ ++
Sbjct: 434 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 493

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN-- 241
                P   T+N +I N+ ++    +A  V  KM+     P  +++  +I  YG+C N  
Sbjct: 494 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLI--YGFCRNGD 551

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +  A  +F +L + G      T N ++ A+        A+ +F+   + G   DS TY++
Sbjct: 552 LEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRV 611

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           L     K    +     L  M + G +P+   F   + + +
Sbjct: 612 LIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLT 652



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 150/353 (42%), Gaps = 34/353 (9%)

Query: 6   WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--LHTRDKA 63
           + + D   Y+ LI  + KK   + AM     M N GC PD   YN +I  +  +    +A
Sbjct: 251 YAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEA 310

Query: 64  KALAK----------ALGYFQKMKGM------ERC------------KPNIVTYNILLRA 95
             L K           + Y   + G+      ER             KP+IV YN L++ 
Sbjct: 311 TELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKG 370

Query: 96  -CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
            C Q   +  +  +  E+ E    PDI TYN V++   K G I +   V++        P
Sbjct: 371 LCLQGLILHALQVM-NEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLP 429

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           D+ TFN LID Y KR   D   Q+ + +      P   T+NS++    KA    +    F
Sbjct: 430 DVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETF 489

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           Q+M      P+ ITY  +I  +   + +  A ++  ++S+ G      + N ++  +C N
Sbjct: 490 QEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRN 549

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT-KANMKELVQKLLKRMEQNG 326
           G    A LLF+     G +  + T+  L  A++ K NM  + +K+   M   G
Sbjct: 550 GDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNM-HMAEKIFDEMLSKG 601



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 142/326 (43%), Gaps = 17/326 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL---HTRDKAKAL 66
           D  +Y+ L+  +  +G    A+ + +EM   GC PD   YN +I       +  D    +
Sbjct: 360 DIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVM 419

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             A+     MKG     P++ T+N L+    +   +D    L + + E  +APD  TYN 
Sbjct: 420 NDAI-----MKGY---LPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNS 471

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           V++   K G + E+      M    C P+ IT+N+LI+++ +    ++  +V   +    
Sbjct: 472 VLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEG 531

Query: 187 EKPTLPTFNSMIINYGKAR---LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
             P   +FN++I  YG  R   L+G A  +FQK+    Y+ +  T+  +I  +    N+ 
Sbjct: 532 LHPDAVSFNTLI--YGFCRNGDLEG-AYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMH 588

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A +IFDE+   G      T   +++  C       A +        G  P  ST+  + 
Sbjct: 589 MAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVI 648

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVP 329
            + T  +       ++  M + G+VP
Sbjct: 649 NSLTVNHRVFQAVGIIHIMVKIGVVP 674



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 127/320 (39%), Gaps = 13/320 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  +   G+        +  R+   R  P+  + L  A +    +A  L  A+  F
Sbjct: 18  YCALIRPLASAGRVDAVDAAVASARS---RLSPATIHPLYVASIRAYARAGRLRDAVDAF 74

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M  +  C P    YN ++ A   A   DQ + ++  +  + ++PD++T+   + ++  
Sbjct: 75  ERMD-LFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSF-- 131

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
             +       L  +++   +  +    ++   Y      D   Q+F  ++H+   P L  
Sbjct: 132 -CLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDA-RQLFDQMLHTHVFPNLAA 189

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDE 251
           FN ++    K     +A  +  K+     + +  TY   I + G C+   +  A  + D 
Sbjct: 190 FNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYN--IWIRGLCEAGRLPEAVRLVDG 247

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +        V T N ++   C   +P EA        N G  PD  TY  +   Y K +M
Sbjct: 248 MRAYAVP-DVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISM 306

Query: 312 KELVQKLLKRMEQNGIVPNK 331
            +   +LLK     G VP++
Sbjct: 307 VQEATELLKDAVFKGFVPDQ 326



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 132/361 (36%), Gaps = 61/361 (16%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y   I    + G+ R A+  F  M    C P    YNA++           AL  A  +
Sbjct: 53  LYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIM----------DALVDAAYH 102

Query: 73  FQKMKGMER-----CKPNIVTYNILLRA-CAQAR-------------------------- 100
            Q  K   R       P++ T+ I LR+ C  AR                          
Sbjct: 103 DQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGL 162

Query: 101 ----NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
               +      LF ++  + + P++  +N V+ A  K G + E   +L ++       ++
Sbjct: 163 YAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINL 222

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
            T+N+ I    +     +  ++    M +   P + T+N++I    K  +  +A +  ++
Sbjct: 223 FTYNIWIRGLCEAGRLPEAVRLVDG-MRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRR 281

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC--MN 274
           M      P   TY  II   GYC        +  E ++L KD            YC  +N
Sbjct: 282 MMNQGCLPDDFTYNTIID--GYC-----KISMVQEATELLKDAVFKGFVPDQVTYCSLIN 334

Query: 275 GLPTEADL-----LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           GL  E D+     LF  +   G+ PD   Y  L K      +     +++  M + G  P
Sbjct: 335 GLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHP 394

Query: 330 N 330
           +
Sbjct: 395 D 395


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 155/333 (46%), Gaps = 6/333 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  +I  + + G+++ A  L  EM + G +P+  +Y  LI  H     K   ++ A    
Sbjct: 456 YGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGH----SKEGNISLACEAL 511

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KM       P++  YN L++  +    +++    + ++ +  L PD +TY+G++  Y K
Sbjct: 512 EKMT-KANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCK 570

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +++ + +L +M ++  KP+  T+  L++ Y K   ++K+  + +S++ S +KP    
Sbjct: 571 TGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHI 630

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +  +I N  ++     A  V  ++      P    Y  +I+      ++ +A  + DE++
Sbjct: 631 YGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMA 690

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           K G +  +   NA+++ +C +G  + A  +F++    G+ P+  TY  L     K     
Sbjct: 691 KEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDIT 750

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSSLA 346
               L K M   GI P+  F    L T  S  A
Sbjct: 751 DAFDLYKEMLDRGIAPDA-FVYNVLATGCSDAA 782



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 142/305 (46%), Gaps = 14/305 (4%)

Query: 31  MW-LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           +W L   M  +G  PD   Y+  I AH   RD       A   F++M+  + C  N VTY
Sbjct: 227 LWKLKGFMEGAGILPDVYTYSTFIEAHCKARD----FDAAKKVFEEMRRRD-CAMNEVTY 281

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           N+++    ++  V++     +E+ +  L+PD +TY  +M+   K   +KE +++L  M  
Sbjct: 282 NVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSC 341

Query: 150 NQCKPDIITFNLLIDSYGKR----QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
           +  KP+I+ +  L+D + K     +AFD    + K ++ +  +P    ++++I    K  
Sbjct: 342 SGLKPNIVVYGTLVDGFMKEGKTAEAFD----ILKEMISAGVQPNKIMYDNLIRGLCKIG 397

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
             G+A  + ++M  +   P   TY  ++  +    +   A E+ +E+   G    V +  
Sbjct: 398 QLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYG 457

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
            M+   C NG   EA  L E   + G+ P++  Y  L   ++K     L  + L++M + 
Sbjct: 458 IMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKA 517

Query: 326 GIVPN 330
            + P+
Sbjct: 518 NVHPD 522



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 158/341 (46%), Gaps = 24/341 (7%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y  L+    K+G+T  A  +  EM ++G +P+  +Y+ LI        K   L +A   
Sbjct: 350 VYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLC----KIGQLGRASKL 405

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            ++M  +   +P+  TYN L++   Q  + D    L  E+  S + P++Y+Y  +++   
Sbjct: 406 LKEMIKV-GLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLC 464

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ----AFDKMEQVFKSLMHSKEK 188
           +NG  KE  ++L  M S   KP+   +  LI  + K      A + +E++ K+ +H    
Sbjct: 465 QNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVH---- 520

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAR 246
           P L  +NS+I          +AE  + ++      P   TY  +I  +GYC   N+ +A 
Sbjct: 521 PDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLI--HGYCKTGNLEKAD 578

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           ++  ++   G      T   +LE Y  +    +   + ++    G  PD+  Y ++ +  
Sbjct: 579 QLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNL 638

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
           +++   E+   +L  +E+NG+VP+       L  +SS ++G
Sbjct: 639 SRSENMEVAFMVLTEVEKNGLVPD-------LHIYSSLISG 672



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 138/331 (41%), Gaps = 5/331 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I+ + + G    A     EM + G  PD   Y AL+        K   L +A    
Sbjct: 281 YNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLC----KGSRLKEAKALL 336

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M      KPNIV Y  L+    +     +   + KE+  + + P+   Y+ ++    K
Sbjct: 337 DEMS-CSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCK 395

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +     +L  M     +PD  T+N L+  + ++   D   ++   + +S   P + +
Sbjct: 396 IGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYS 455

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +  MI    +     +A  + ++M +    P+   Y  +I  +    N+S A E  ++++
Sbjct: 456 YGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMT 515

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           K      +   N++++     G   EA+  +      G+ PD  TY  L   Y K    E
Sbjct: 516 KANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLE 575

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
              +LL++M  +G+ PN   + + LE +  S
Sbjct: 576 KADQLLRQMLNSGLKPNADTYTDLLEGYFKS 606



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 109/246 (44%), Gaps = 8/246 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  IY  +I  + +     +A  + +E+  +G  PD  +Y++LI+      D    + KA
Sbjct: 627 DNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIAD----MEKA 682

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +G   +M   E  +P IV YN L+    ++ ++ +   +F  +    L P+  TY  ++D
Sbjct: 683 VGLLDEM-AKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALID 741

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF-KSLMHSKEK 188
              KNG I +   +   M      PD   +N+L  + G   A D  + +F    M ++  
Sbjct: 742 GNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVL--ATGCSDAADLEQALFLTEEMFNRGY 799

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             +  FN+++  + K     + E +   M   +  P+  T E +++ +G    +  A  +
Sbjct: 800 ANVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRV 859

Query: 249 FDELSK 254
           F EL +
Sbjct: 860 FAELQQ 865



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 99/224 (44%), Gaps = 18/224 (8%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D  IYS LI+ + K      A+ L  EM   G  P    YNALI     + D    ++
Sbjct: 660 VPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGD----IS 715

Query: 68  KALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           +A   F  +  KG+    PN VTY  L+    +  ++     L+KE+ +  +APD + YN
Sbjct: 716 RARNVFDSILAKGL---VPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYN 772

Query: 126 ----GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
               G  DA      +   E + +R  +N     +  FN L+  + KR    + E++   
Sbjct: 773 VLATGCSDAADLEQALFLTEEMFNRGYAN-----VSLFNTLVHGFCKRGKLQETEKLLHV 827

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
           +M  +  P   T   ++  +GKA   G+A  VF ++   K + S
Sbjct: 828 MMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQQKKASQS 871



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 83/214 (38%)

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
           +P     + ++D Y K G ++    V+  M      P     N L+    +  A + + +
Sbjct: 170 SPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWK 229

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           +   +  +   P + T+++ I  + KAR    A+ VF++M       + +TY  +I+   
Sbjct: 230 LKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLC 289

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
               V  A    +E+   G      T  A++   C      EA  L +     G+ P+  
Sbjct: 290 RSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIV 349

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
            Y  L   + K         +LK M   G+ PNK
Sbjct: 350 VYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNK 383


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 144/344 (41%), Gaps = 27/344 (7%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAM------WLFSEMRNSGCR-----------PDPSVYNA 51
           AD   +S +I ++ KKG    A          S M +  C+           P   ++N 
Sbjct: 247 ADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNT 306

Query: 52  LITAHLHTRDKAKALAKALGYFQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALF 109
           LI    H   K+K L   +  FQ+MK M+   C PN+ TYNI++    +A+ +D+   L 
Sbjct: 307 LI----HAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELV 362

Query: 110 KELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR 169
            E+    L+PD+ TY+ ++D   K G +     +L  M      PD  T   ++++  K 
Sbjct: 363 NEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKA 422

Query: 170 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
              D      +++      P L T+N+++    KA    +A     KM A K TP   +Y
Sbjct: 423 GKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSY 482

Query: 230 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289
             IIT        + A  IF E+ K G        +++L+    NGL    DL  E    
Sbjct: 483 TIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLE---DLALELLKT 539

Query: 290 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
               PD   +K++     KA   E   ++++RM   G  P   F
Sbjct: 540 SLCKPDFVMHKMVVDGLCKAGKAEDACEVVERMADAGF-PADAF 582



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/383 (21%), Positives = 151/383 (39%), Gaps = 59/383 (15%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R Y  D   YS ++  + K G+   A  L  ++R SG + +   Y+ +I        K
Sbjct: 65  QRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCC----K 120

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A  +  AL  F+ M     C P++VT+N LL+       + +   LF+ + ++   P++ 
Sbjct: 121 ASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVI 180

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF----------------------- 159
           +Y+ ++D   K G + E   +   M    C PD++ +                       
Sbjct: 181 SYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKM 240

Query: 160 -----------------------------NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
                                        N +I+   +    D+  + F+ ++     P+
Sbjct: 241 VTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPS 300

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVSRARE 247
              FN++I    K++       +FQ+M +MK     P+  TY  ++        +  A+E
Sbjct: 301 AELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQE 360

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + +E++  G    V T +A+++  C  G    A  L E     GV PDS T   +  A +
Sbjct: 361 LVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALS 420

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           KA   +     L+ M+  G  P+
Sbjct: 421 KAGKVDYALSHLETMKARGSTPD 443



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/351 (19%), Positives = 142/351 (40%), Gaps = 29/351 (8%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L+  + K G+   A  L+ EM    C PD   Y + +T       KA  +A+A    
Sbjct: 182 YSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLC----KANRVAEACDCC 237

Query: 74  QKM--KGMERCKPNIVTY-----------------NILLRACAQARNVDQVNALFKELHE 114
           +KM  KG    K + V +                 N ++    ++  +D+    F+E+  
Sbjct: 238 RKMVTKGS---KADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMIS 294

Query: 115 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ---CKPDIITFNLLIDSYGKRQA 171
               P    +N ++ A  K+  + +   +  RMKS +   C P++ T+N+++D+  K + 
Sbjct: 295 RNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQ 354

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
            D+ +++   + +    P + T+++++    K     +A  + ++M+     P   T   
Sbjct: 355 LDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDAS 414

Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
           I+        V  A    + +   G    + T N +L+  C  G   EA           
Sbjct: 415 ILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAK 474

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            TPD  +Y ++  A  ++        + + M + G++P+   +   L+  +
Sbjct: 475 CTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLA 525



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 97/211 (45%), Gaps = 11/211 (5%)

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           K   + +   +  + KG +    ++ TYN  L A A+A         F+++      PD 
Sbjct: 17  KISTIVRLFDWLGRQKGYQH---SVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDD 73

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           +TY+ V+    K G + + + +L +++ +  K ++IT++++ID   K    D   ++FK+
Sbjct: 74  FTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKT 133

Query: 182 LMHSKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           +       P + TFNS++          +A  +F+ M      P+ I+Y  ++      D
Sbjct: 134 MSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLL------D 187

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
            + +A  + DE  +L ++M   +    L AY
Sbjct: 188 GLCKAGRL-DEACRLWEEMVEKSCVPDLVAY 217



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 12/178 (6%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K R    D   Y+ L+  + K G+   A+   ++M  + C PD   Y  +ITA   +   
Sbjct: 436 KARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQA 495

Query: 63  AKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           A A A     FQ+M  +G+    P+ V Y+ LL     ARN  +  AL + L  S+  PD
Sbjct: 496 AGAHA----IFQEMVKRGV---LPDTVLYHSLLD--GLARNGLEDLAL-ELLKTSLCKPD 545

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
              +  V+D   K G  ++   V+ RM       D  T+  ++    K    DK  Q+
Sbjct: 546 FVMHKMVVDGLCKAGKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKARQL 603


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 144/326 (44%), Gaps = 13/326 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH--TRDKAKALAKAL 70
           +Y  ++    + G  R ++ +   M   GC  D    N ++ A       D+A  L + L
Sbjct: 148 MYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKL 207

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
            +F        C+ +IV+YN +L+    A+    V  L  E+     AP+I T+N ++  
Sbjct: 208 AFFG-------CEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             +NG+ + +  VL++M  + C PDI  +  +ID   K    +   ++   +     KP 
Sbjct: 261 LCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPN 320

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREI 248
           +  +N+++     A    +AE +  +M         +T+  ++    +C N  V R  E+
Sbjct: 321 VVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDF--FCQNGLVDRVIEL 378

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            +++   G    V T   ++  +C  GL  EA +L ++  + G  P++ +Y ++ K    
Sbjct: 379 LEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCS 438

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
           A      ++L+ +M Q G  PN   F
Sbjct: 439 AGRWVDAEELMSQMIQQGCPPNPVTF 464



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 152/365 (41%), Gaps = 50/365 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DTG  + ++  + ++G    A+ L  ++   GC  D   YNA++        K   +AK 
Sbjct: 180 DTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVL--------KGLCMAKR 231

Query: 70  LGYFQK-MKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            G  ++ M  M R  C PNIVT+N L+    +    ++V+ +  ++ E    PDI  Y  
Sbjct: 232 WGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYAT 291

Query: 127 VMDAYGKNGMI-----------------------------------KEMESVLSRMKSNQ 151
           ++D   K G +                                   KE E +LS M    
Sbjct: 292 IIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKD 351

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
           C  D +TFN+L+D + +    D++ ++ + ++     P + T+ ++I  + K  L  +A 
Sbjct: 352 CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAV 411

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLE 269
            + + M++    P+ ++Y   I + G C       A E+  ++ + G      T N ++ 
Sbjct: 412 MLLKSMSSCGCKPNTVSY--TIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLIN 469

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             C  GL  +A  L +     G +PD  +Y  +     KA   E   +LL  M   GI P
Sbjct: 470 FLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP 529

Query: 330 NKRFF 334
           N   +
Sbjct: 530 NTIIY 534



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 146/335 (43%), Gaps = 7/335 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ +I  + K+G   +A  + + M + G +P+   YN ++   L + ++ K   + 
Sbjct: 285 DIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKG-LCSAERWKEAEEL 343

Query: 70  LG-YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           L   FQK      C  + VT+NIL+    Q   VD+V  L +++      PD+ TY  V+
Sbjct: 344 LSEMFQK-----DCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVI 398

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + + K G+I E   +L  M S  CKP+ +++ +++        +   E++   ++     
Sbjct: 399 NGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCP 458

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   TFN++I    K  L  +A  + ++M     +P  I+Y  +I   G       A E+
Sbjct: 459 PNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALEL 518

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            + +   G        +++  A    G   +   +F+N  +  +  D+  Y  +  +  K
Sbjct: 519 LNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCK 578

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
               +        M  NG +PN+  +   ++  +S
Sbjct: 579 RWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLAS 613



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 125/299 (41%), Gaps = 9/299 (3%)

Query: 46  PSVYNAL-ITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQ 104
           P+ Y    +   L TR +   +A AL    +M   + C P    Y+++L A  ++     
Sbjct: 109 PNAYTFFPVVRGLCTRGR---IADALEVLDEMS-FKGCAPIPPMYHVILEAACRSGGFRN 164

Query: 105 VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164
              + + +H      D    N V++A  + G + E   +L ++    C+ DI+++N ++ 
Sbjct: 165 SVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLK 224

Query: 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 224
                + +  +E++   ++     P + TFN++I    +  L  +   V  +M+    TP
Sbjct: 225 GLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTP 284

Query: 225 SFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
               Y  II   G C   ++  A EI + +   G    V   N +L+  C      EA+ 
Sbjct: 285 DIRMYATIID--GICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEE 342

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           L           D  T+ +L   + +  + + V +LL++M  +G +P+   +   +  F
Sbjct: 343 LLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGF 401



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 94/230 (40%), Gaps = 4/230 (1%)

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           + P+ YT+  V+      G I +   VL  M    C P    +++++++  +   F    
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 177 QVFKSLMHSKEKPTLPTFN-SMIIN-YGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
           +V ++ MH+K   TL T N ++++N   +     +A  + +K+         ++Y  ++ 
Sbjct: 167 RVLEA-MHAK-GCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLK 224

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
                       E+ DE+ ++     + T N ++   C NGL      +       G TP
Sbjct: 225 GLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTP 284

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           D   Y  +     K    E+  ++L RM   G+ PN   +   L+   S+
Sbjct: 285 DIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSA 334


>gi|222617300|gb|EEE53432.1| hypothetical protein OsJ_36514 [Oryza sativa Japonica Group]
          Length = 607

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 145/314 (46%), Gaps = 4/314 (1%)

Query: 31  MWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90
           M +   M+ +G RP    YNA+I A          L   LGYF++M     C P+  T+N
Sbjct: 1   MGVLESMKGAGLRPTTVSYNAVIDA---CGKGGVDLRFTLGYFRQMLKDGLC-PDRKTFN 56

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
            LL AC++  +++   A+F E+    +  DIYTYN  +DA  K G ++    VL  M++ 
Sbjct: 57  SLLAACSRVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAK 116

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
             KP+++T++ LID Y K + +++  ++ + +   + +     +N+++  Y KA    + 
Sbjct: 117 GVKPNVVTYSTLIDGYSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEI 176

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
             V  +M  +      +TY  +I  YG    +     +  ++ K G    V T + +++ 
Sbjct: 177 ANVCDEMEELGIEKDTVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDI 236

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y   G+  +A  ++ +    G+ PD   +        K  + E    LL  M + GI PN
Sbjct: 237 YSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPN 296

Query: 331 KRFFLEALETFSSS 344
              +   ++ F  S
Sbjct: 297 VVTYNAIIDAFGKS 310



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 134/304 (44%), Gaps = 16/304 (5%)

Query: 14  YSKLIAVMGKKG-QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           Y+ +I   GK G   R  +  F +M   G  PD   +N+L+ A      +   L  A   
Sbjct: 19  YNAVIDACGKGGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLAAC----SRVGHLEDARAV 74

Query: 73  FQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           F +M   G+ R   +I TYN  + A  +  N++    +  ++    + P++ TY+ ++D 
Sbjct: 75  FDEMIHLGIGR---DIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPNVVTYSTLIDG 131

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           Y K    +E   +  +MKS + + D + +N L+  Y K   + ++  V   +     +  
Sbjct: 132 YSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKD 191

Query: 191 LPTFNSMIINYGKARLQGKAEYV---FQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
             T+NS+I  YGK   QG+ + V    Q M      PS +TY  +I +Y        A  
Sbjct: 192 TVTYNSLINGYGK---QGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFN 248

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           ++ +  + G    V   ++ ++    NGL   A  L  +   MG+ P+  TY  +  A+ 
Sbjct: 249 VYLDFKESGLKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAIIDAFG 308

Query: 308 KANM 311
           K+ +
Sbjct: 309 KSKV 312



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 145/331 (43%), Gaps = 15/331 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ L+A   + G    A  +F EM + G   D   YN  I A     +   A+   
Sbjct: 51  DRKTFNSLLAACSRVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVL 110

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L    + KG+   KPN+VTY+ L+   ++    ++   L +++    +  D   YN ++ 
Sbjct: 111 LD--MEAKGV---KPNVVTYSTLIDGYSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLA 165

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y K G   E+ +V   M+    + D +T+N LI+ YGK+   D +  + + +      P
Sbjct: 166 IYVKAGKYAEIANVCDEMEELGIEKDTVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAP 225

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
           ++ T++++I  Y KA + G A  V+         P  + +   I        +  A  + 
Sbjct: 226 SVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLIEWALSLL 285

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD-----SSTYKLLYK 304
           ++++++G    V T NA+++A+  + +  E D    +   +GV        ++      +
Sbjct: 286 NDMTEMGIKPNVVTYNAIIDAFGKSKVMMEDDSEVGDMGIVGVYGGQIVRVANPVSRGGR 345

Query: 305 AYTKANMKE-----LVQKLLKRMEQNGIVPN 330
           + T   M+       + +L ++M Q G+ PN
Sbjct: 346 SATDVRMRRSQELFFILELFQKMVQQGVRPN 376



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 118/271 (43%), Gaps = 18/271 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  Y+ LI   GK+G+  +   L  +MR  G  P    Y+ LI  +        A    
Sbjct: 191 DTVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVY 250

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L +  K  G+   KP++V ++  +   A+   ++   +L  ++ E  + P++ TYN ++D
Sbjct: 251 LDF--KESGL---KPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAIID 305

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK----------MEQVF 179
           A+GK+ ++ E +S +  M         I       S G R A D           + ++F
Sbjct: 306 AFGKSKVMMEDDSEVGDMGIVGVYGGQIVRVANPVSRGGRSATDVRMRRSQELFFILELF 365

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           + ++    +P + TF++++    +      A  + +++         + Y  ++   G  
Sbjct: 366 QKMVQQGVRPNVVTFSAILNACSRCNSFEDAALLLEQLRLFDNFVYGVAYGLLV---GSR 422

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
           +  S+A+ +F++L ++      +  NA+ + 
Sbjct: 423 EVWSQAQSLFNQLGRMDSPTSSAFYNALTDV 453


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 147/334 (44%), Gaps = 11/334 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI  +  KG    A+ L   +  +G R D   Y  LI        K    ++A+G+ 
Sbjct: 149 FTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLC----KMGKTSEAVGWL 204

Query: 74  QKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           +KM+  ER   PN+V Y+ ++    +   V +   L  E+    + P++ TY  ++    
Sbjct: 205 RKME--ERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLC 262

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
             G  KE  S+L  M      PD+ + N+L+D   K     + + V   ++   E P + 
Sbjct: 263 NFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVF 322

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFD 250
           T+NS+I  Y       +A  VF+ M +    P  + Y  +I  +G+C   N+++A  + D
Sbjct: 323 TYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLI--HGWCKIKNINKAMHLLD 380

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+ K+G    V T   ++  +C  G P  A  LF N H  G  P+  T  ++     K+ 
Sbjct: 381 EMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQ 440

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           +      L   ME++ +  N   +   L+   S+
Sbjct: 441 LLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSA 474



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 154/359 (42%), Gaps = 40/359 (11%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y +D   Y  LI  + K G+T  A+    +M      P+  VY+ ++        K   +
Sbjct: 177 YRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGLC----KDGLV 232

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           ++ALG   +M G +  KPN+VTY  L++         +  +L  E+ +  + PD+ + N 
Sbjct: 233 SEALGLCLEMSG-KGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNI 291

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++D   K G I + +SV+  M      PD+ T+N LID Y  +   D+  +VF+ ++   
Sbjct: 292 LVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRG 351

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY----------------- 229
             P +  + S+I  + K +   KA ++  +M  + +TP  +T+                 
Sbjct: 352 CLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAK 411

Query: 230 ----------------ECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
                            C I + G C +  +S A  +F  + K   D+ +   + +L+  
Sbjct: 412 ELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGM 471

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           C  G    A  LF      G+  +   Y ++   + K  + +  + LL  ME+NG +P+
Sbjct: 472 CSAGKLNTALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPD 530



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 132/342 (38%), Gaps = 45/342 (13%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+++ W   +  +YS ++  + K G    A+ L  EM   G +P+   Y  LI   L   
Sbjct: 207 MEERNWN-PNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQG-LCNF 264

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            + K     L    KM  M    P++ + NIL+    +   + Q  ++   +      PD
Sbjct: 265 GRWKEAGSLLDEMMKMGVM----PDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPD 320

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           ++TYN ++D Y     + E   V   M S  C PDI+ +  LI  + K +  +K   +  
Sbjct: 321 VFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLD 380

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++     P + T+ ++I  + +      A+ +F  M      P+  T  C I + G C 
Sbjct: 381 EMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQT--CAIILDGLCK 438

Query: 241 N--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCM------------------------- 273
           +  +S A  +F  + K   D+ +   + +L+  C                          
Sbjct: 439 SQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINVYA 498

Query: 274 ----------NGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
                      GL  +A+ L  N    G  PDS TY +  + 
Sbjct: 499 YTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQG 540



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 119/272 (43%), Gaps = 6/272 (2%)

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI-LAPD 120
           K K++ +AL +F  M  M    P+++ + +LL    + ++     +L KE+H S+ + PD
Sbjct: 52  KLKSIDEALNFFHTMAKMNP-LPSVIDFTLLLGFIVKMKHYTTAISLVKEMHSSLGIKPD 110

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            +  N V+++     ++    SVL  M     +P ++TF +LI+    +    +  ++  
Sbjct: 111 TFILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVELVD 170

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +  +  +  + T+  +I    K     +A    +KM    + P+ + Y  +  M G C 
Sbjct: 171 HVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTV--MDGLCK 228

Query: 241 N--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
           +  VS A  +  E+S  G    + T   +++  C  G   EA  L +    MGV PD  +
Sbjct: 229 DGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQS 288

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +L     K       + ++  M   G VP+
Sbjct: 289 LNILVDVLCKEGKIMQAKSVIGFMILVGEVPD 320



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 88/195 (45%), Gaps = 6/195 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           +  D   ++ LI    + G+   A  LF  M   G  P+     A+I   L    K++ L
Sbjct: 387 FTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTC-AII---LDGLCKSQLL 442

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           ++AL  F  M+       NIV Y+I+L     A  ++    LF  L    L  ++Y Y  
Sbjct: 443 SEALSLFHAMEK-SNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINVYAYTI 501

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++ + K G++ + E +LS M+ N C PD  T+N+ +      +   +  + + ++M  K
Sbjct: 502 MINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVAEREIARSIK-YLTMMRDK 560

Query: 187 EKPTLPTFNSMIINY 201
                 T   MIINY
Sbjct: 561 GFSVDATTTEMIINY 575



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 76/205 (37%), Gaps = 10/205 (4%)

Query: 133 KNGMIKEMESVLS---RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-- 187
           K+G +K ++  L+    M      P +I F LL+    K + +     + K  MHS    
Sbjct: 49  KSGKLKSIDEALNFFHTMAKMNPLPSVIDFTLLLGFIVKMKHYTTAISLVKE-MHSSLGI 107

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRA 245
           KP     N +I +    +L      V   M  +   PS +T+  +I   G C   +V RA
Sbjct: 108 KPDTFILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPSVVTFTILIN--GLCVKGDVGRA 165

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            E+ D + K G    V T   ++   C  G  +EA             P+   Y  +   
Sbjct: 166 VELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDG 225

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
             K  +      L   M   GI PN
Sbjct: 226 LCKDGLVSEALGLCLEMSGKGIKPN 250


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 146/352 (41%), Gaps = 40/352 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI ++ KKG+ R A  + S++      PD   Y +LI  H   R+    L  A G F
Sbjct: 243 FNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRN----LDLAFGVF 298

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   E C PN VTY+ L+        VD+   + +E+ E  + P +YTY   + A   
Sbjct: 299 DRMVK-EGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCA 357

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
               +E   +++RMK   C+P++ T+  LI    +    +    ++  ++     P   T
Sbjct: 358 IEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVT 417

Query: 194 FNSMIINY-----------------GKARLQG------------------KAEYVFQKMT 218
           +N++I                    G   L                    KA  +F+KM 
Sbjct: 418 YNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKML 477

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
            M   P+ +TY  +I  Y    NV+ A  + D + + G +    T N ++  +   G   
Sbjct: 478 KMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLE 537

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            A   F+     G+ P+  +Y  L   ++K    ++   LL+RME+ G  PN
Sbjct: 538 SASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPN 589



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 150/339 (44%), Gaps = 5/339 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+R    +   Y+ LI+ + + G+  +A+ L+ +M   G  P+   YNALI         
Sbjct: 372 KKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELC----V 427

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
               + AL  F  M+G      N  TYN +++      ++++   LF+++ +    P + 
Sbjct: 428 GGRFSTALKIFHWMEG-HGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVV 486

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN +++ Y   G +     +L  MK N C+PD  T+N L+  + K    +     F+ +
Sbjct: 487 TYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEM 546

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           +     P   ++ ++I  + K      A  + ++M  M   P+  +Y  +I      +  
Sbjct: 547 VECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRF 606

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           S A +I D++++ G    V T   +++  C NG    A  +F +       P+  TY  L
Sbjct: 607 SEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSL 666

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
                +    +  + LLK ME+ G+ P++  F   ++ F
Sbjct: 667 IYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGF 705



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 143/373 (38%), Gaps = 58/373 (15%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA-------- 65
           Y+ LI    K G+  +A+ L   M   GC P+   YNA+I         ++A        
Sbjct: 558 YTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMA 617

Query: 66  ----LAKALGYFQKMKGMER------------------CKPNIVTYNILLRACAQARNVD 103
               L   + Y   + G+ R                  C PN+ TY+ L+    Q    D
Sbjct: 618 EQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKAD 677

Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
           +   L KE+    LAPD  T+  ++D +   G I     +L RM    CKP+  T+++L+
Sbjct: 678 EAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLL 737

Query: 164 DSYGKR------QAFDKMEQVFKSLMHSKE------------------KPTLPTFNSMII 199
               K       +   + E V+    H K+                  +PTL T+++++ 
Sbjct: 738 KGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVS 797

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGK 257
              +     +AE + + M    + P    Y  ++    +C N  V  A +IF  +   G 
Sbjct: 798 GLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLI--AHCKNLEVDHALKIFHSIEAKGF 855

Query: 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
            + +S   A++ A C  G   EA  LF+N        D   + +L     K    +L  K
Sbjct: 856 QLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMK 915

Query: 318 LLKRMEQNGIVPN 330
           LL  ME     PN
Sbjct: 916 LLHIMESKNFTPN 928



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 145/344 (42%), Gaps = 35/344 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y++L++   K G+   A + F EM   G  P+P  Y  LI  H     K   +  A
Sbjct: 519 DEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGH----SKDGKVDIA 574

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L   ++M+ M  C PN+ +YN ++   ++     +   +  ++ E  L P++ TY  ++D
Sbjct: 575 LSLLERMEEM-GCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLID 633

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              +NG  +    +   M+  +C P++ T++ LI    +    D+ E + K +      P
Sbjct: 634 GLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAP 693

Query: 190 TLPTFNSMIINYGKARLQGKAEYVF---QKMTAMKYTPSFITY---------ECII---- 233
              TF S+I  +    + G+ ++ F   ++M  +   P++ TY         EC++    
Sbjct: 694 DEVTFTSLIDGF---VVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEK 750

Query: 234 ------TMYGYCD-----NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
                  +Y +       N      +   +S++G +  + T + ++   C  G   EA+ 
Sbjct: 751 VAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQ 810

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           L ++    G  PD   Y  L  A+ K    +   K+   +E  G
Sbjct: 811 LVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKG 854



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 138/351 (39%), Gaps = 33/351 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI     KG    A  L   M+ +GC PD   YN L++       K   L  A  YF
Sbjct: 488 YNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGF----SKWGKLESASFYF 543

Query: 74  QKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           Q+M     C   PN V+Y  L+   ++   VD   +L + + E    P++ +YN V++  
Sbjct: 544 QEMV---ECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGL 600

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K     E E +  +M      P++IT+  LID   +        ++F  +   K  P L
Sbjct: 601 SKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNL 660

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T++S+I    +     +AE + ++M      P  +T+  +I  +     +  A  +   
Sbjct: 661 YTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRR 720

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGL-----------------PTEADLLFENSHNM---- 290
           +  +G      T + +L+      L                 P E D+ FE   N+    
Sbjct: 721 MVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARM 780

Query: 291 ---GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
              G  P   TY  L     +       ++L+K M++ G  P++  +   L
Sbjct: 781 SEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLL 831



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 125/297 (42%), Gaps = 39/297 (13%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P+++T+N L+   ++   V +   +  ++ +  L+PD++TY  ++  + +N  +     
Sbjct: 237 QPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFG 296

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI---- 198
           V  RM    C P+ +T++ LI+        D+   + + ++    +PT+ T+   I    
Sbjct: 297 VFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALC 356

Query: 199 -----------------------------INYGKARLQGKAEY---VFQKMTAMKYTPSF 226
                                        +  G +RL GK E    ++ KM      P+ 
Sbjct: 357 AIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRL-GKLEVAIGLYHKMLKEGLVPNT 415

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           +TY  +I         S A +IF  +   G      T N +++  C+ G   +A +LFE 
Sbjct: 416 VTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEK 475

Query: 287 SHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
              MG  P   TY  L   Y TK N+     +LL  M++NG  P++  + E +  FS
Sbjct: 476 MLKMGPLPTVVTYNTLINGYLTKGNVNN-AARLLDLMKENGCEPDEWTYNELVSGFS 531



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 106/242 (43%), Gaps = 4/242 (1%)

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
           ++++AC     + +V     E+        +Y+ N ++    K  M++   ++  +M ++
Sbjct: 175 LMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNS 234

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
             +P ++TFN LI+   K+    + E +   +      P + T+ S+I+ + + R    A
Sbjct: 235 GIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLA 294

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAML 268
             VF +M      P+ +TY  +I   G C+   V  A ++ +E+ + G +  V T    +
Sbjct: 295 FGVFDRMVKEGCDPNSVTYSTLIN--GLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPI 352

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
            A C      EA  L       G  P+  TY  L    ++    E+   L  +M + G+V
Sbjct: 353 TALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLV 412

Query: 329 PN 330
           PN
Sbjct: 413 PN 414



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 11/190 (5%)

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
           N L+    K +  +    ++K +++S  +P+L TFN++I    K     +AE +  ++  
Sbjct: 209 NTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQ 268

Query: 220 MKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
              +P   TY  +I   G+C   N+  A  +FD + K G D    T + ++   C  G  
Sbjct: 269 YDLSPDVFTYTSLI--LGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRV 326

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEA 337
            EA  + E     G+ P   TY L   A      +E   +L+ RM++ G  PN       
Sbjct: 327 DEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPN------- 379

Query: 338 LETFSSSLAG 347
           ++T+++ ++G
Sbjct: 380 VQTYTALISG 389



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 9/151 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L++ + +KG+   A  L  +M+  G  PD  +Y +L+ AH     K   +  AL  F
Sbjct: 792 YSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHC----KNLEVDHALKIF 847

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             +  KG +    ++  Y  L+ A  +A  V++  ALF  + E     D   +  ++D  
Sbjct: 848 HSIEAKGFQL---HLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGL 904

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
            K G +     +L  M+S    P+I T+ +L
Sbjct: 905 LKEGELDLCMKLLHIMESKNFTPNIQTYVIL 935


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 144/325 (44%), Gaps = 11/325 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI    K  +   A  +   MR+    PD   YN +I   L +R K     K 
Sbjct: 157 DVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMI-GSLCSRGKLDLALKV 215

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L         + C+P ++TY IL+ A      VD+   L  E+    L PD++TYN ++ 
Sbjct: 216 LNQLLS----DNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIR 271

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K GM+     ++  ++   C+PD+I++N+L+ +   +  +++ E++   +   K  P
Sbjct: 272 GMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDP 331

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVSRAR 246
            + T++ +I    +    GK E     +  MK    TP   +Y+ +I  +     +  A 
Sbjct: 332 NVVTYSILITTLCR---DGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAI 388

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E  + +   G    +   N +L   C NG   +A  +F     +G +P+SS+Y  ++ A 
Sbjct: 389 EFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSAL 448

Query: 307 TKANMKELVQKLLKRMEQNGIVPNK 331
             +  K     ++  M  NGI P++
Sbjct: 449 WSSGDKIRALHMILEMMSNGIDPDE 473



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 156/348 (44%), Gaps = 9/348 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALG 71
           Y+ LI     +G    A+ L  EM + G +PD   YN +I         D+A  + + L 
Sbjct: 231 YTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNL- 289

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
              ++KG   C+P++++YNILLRA       ++   L  ++      P++ TY+ ++   
Sbjct: 290 ---ELKG---CEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTL 343

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            ++G I+E  ++L  MK     PD  +++ LI ++ +    D   +  ++++     P +
Sbjct: 344 CRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDI 403

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             +N+++    K     +A  +F K+  +  +P+  +Y  + +      +  RA  +  E
Sbjct: 404 VNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILE 463

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G D    T N+M+   C  G+  EA  L  +  +    P   TY ++   + KA+ 
Sbjct: 464 MMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHR 523

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTR 359
            E    +L+ M  NG  PN+  +   +E    +   +++     DL R
Sbjct: 524 IEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVR 571



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 7/243 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI  + + G+   AM L   M+  G  PD   Y+ LI A      +   L  A+ + 
Sbjct: 336 YSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFC----REGRLDVAIEFL 391

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M   + C P+IV YN +L    +    DQ   +F +L E   +P+  +YN +  A   
Sbjct: 392 ETMIS-DGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWS 450

Query: 134 NG-MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           +G  I+ +  +L  M SN   PD IT+N +I    +    D+  ++   +   +  P++ 
Sbjct: 451 SGDKIRALHMIL-EMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVV 509

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N +++ + KA     A  V + M      P+  TY  +I   G+    + A E+ ++L
Sbjct: 510 TYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDL 569

Query: 253 SKL 255
            ++
Sbjct: 570 VRI 572



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/301 (20%), Positives = 130/301 (43%), Gaps = 6/301 (1%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           ++ L   M   G  PD  +   LI      R+  KA+ + +   +K       +P++  Y
Sbjct: 108 SLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAV-RVMEILEKFG-----QPDVFAY 161

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           N L+    +   +D    +   +     +PD  TYN ++ +    G +     VL+++ S
Sbjct: 162 NALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLS 221

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
           + C+P +IT+ +LI++       D+  ++   ++    KP + T+N++I    K  +  +
Sbjct: 222 DNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDR 281

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  + + +      P  I+Y  ++             ++  ++     D  V T + ++ 
Sbjct: 282 AFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILIT 341

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             C +G   EA  L +     G+TPD+ +Y  L  A+ +    ++  + L+ M  +G +P
Sbjct: 342 TLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLP 401

Query: 330 N 330
           +
Sbjct: 402 D 402



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 19/231 (8%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           + K++    D   Y  LIA   ++G+  +A+     M + GC PD   YN ++ A L   
Sbjct: 358 LMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVL-ATLCKN 416

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            KA    +AL  F K+ G   C PN  +YN +  A   + +  +   +  E+  + + PD
Sbjct: 417 GKAD---QALEIFGKL-GEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPD 472

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             TYN ++    + GM+ E   +L  M+S +  P ++T+N+++  + K    +    V +
Sbjct: 473 EITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLE 532

Query: 181 SLMHSKEKPTLPTFNSMIINYGKA--------------RLQGKAEYVFQKM 217
           S++ +  +P   T+  +I   G A              R+   +EY F+++
Sbjct: 533 SMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAISEYSFKRL 583


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 154/366 (42%), Gaps = 31/366 (8%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKAL 66
           AD  +Y+  I   GK G+  ++   F EM++ G  PD   Y ++I         D+A  L
Sbjct: 263 ADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVEL 322

Query: 67  AKAL----------------------GYFQKMKGM-ERCK-----PNIVTYNILLRACAQ 98
            + L                      G F +  G+ ER K     P+++ YN +L    +
Sbjct: 323 FEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGK 382

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
            R V++   +F+E+    + P++ TYN ++D   + G +     +   M+     P+++T
Sbjct: 383 KRRVEEALRIFEEMKRDAV-PNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLT 441

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
            N++ID   K Q  ++   +F+ +      P   TF+S+I   GK      A  +++KM 
Sbjct: 442 VNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKML 501

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
              + P  I Y  +I  +  C       +I+ E+   G    ++ +N  ++     G   
Sbjct: 502 DCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETE 561

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           +   LF   +  G  PD+ +Y +L     KA +     +L   M++ G V +   +   +
Sbjct: 562 KGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVI 621

Query: 339 ETFSSS 344
           + F  S
Sbjct: 622 DGFCKS 627



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 145/337 (43%), Gaps = 13/337 (3%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           + I  +L+A   K  + R A  +   MR    RP  S Y  LI A    R+    L    
Sbjct: 160 SNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLI--- 216

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
             F +M+ +   + N+  +  L+R  A+   VD   +L  E+  + L  DI  YN  +D 
Sbjct: 217 -LFHQMQELGY-EVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDC 274

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           +GK G +         MKS+   PD +T+  +I    K    D+  ++F+ L  +++ P 
Sbjct: 275 FGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPC 334

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
              +N+MI+ YG A    +A  + ++  A    PS I Y CI+T  G    V  A  IF+
Sbjct: 335 AYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFE 394

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+ +      V T N +++  C  G    A  + ++    G+ P+  T  ++     KA 
Sbjct: 395 EMKRDAVP-NVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQ 453

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
             E    + + M+     PN         TFSS + G
Sbjct: 454 KLEEACSIFEGMDDKVCTPNAV-------TFSSLIDG 483



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 146/329 (44%), Gaps = 16/329 (4%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y  +  +++ LI V  ++G+   A+ L  EM+++    D  +YN  I        KA  +
Sbjct: 226 YEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCF----GKAGKV 281

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             +  +F +MK      P+ VTY  ++    +A  +D+   LF++L ++   P  Y YN 
Sbjct: 282 DMSWKFFHEMKS-HGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNT 340

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  YG  G   E   +L R K+    P +I +N ++   GK++  ++  ++F+  M   
Sbjct: 341 MIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEE-MKRD 399

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P +PT+N +I    +      A  +   M      P+ +T   +I        +  A 
Sbjct: 400 AVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEAC 459

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLP-----TEADLLFENSHNMGVTPDSSTYKL 301
            IF+     G D KV T NA+  +  ++GL       +A  L+E   + G  P +  Y  
Sbjct: 460 SIFE-----GMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTS 514

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           L +++ K   KE   K+ K M   G  P+
Sbjct: 515 LIRSFFKCGRKEDGHKIYKEMVHTGCSPD 543



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 137/307 (44%), Gaps = 5/307 (1%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           +I D   YS LI  + K G       LF  M+  GC  D   YNA+I        K+  +
Sbjct: 575 FIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFC----KSGKV 630

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            KA    ++MK ++   P +VTY  ++   A+   +D+   LF+E   + +  ++  Y+ 
Sbjct: 631 NKAYQLLEEMK-VKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSS 689

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++D +GK G I E   ++  +      P++ T+N L+D+  K +  ++    F+S+   K
Sbjct: 690 LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLK 749

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P   T++ +I    + R   KA   +Q+M  +   P+ ITY  +I+      N+  A 
Sbjct: 750 CPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEAS 809

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +F      G     ++ NAM+E         +A  LFE +   G    + T  +L  A 
Sbjct: 810 GLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDAL 869

Query: 307 TKANMKE 313
            KA   E
Sbjct: 870 HKAECLE 876



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 144/332 (43%), Gaps = 5/332 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ LI    K G+      ++ EM ++GC PD +    LI  ++    KA    K    
Sbjct: 511 VYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLT----LINTYMDCVFKAGETEKGRAL 566

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F+++       P+  +Y+IL+    +A   ++   LF  + E     D + YN V+D + 
Sbjct: 567 FREINA-HGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFC 625

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K+G + +   +L  MK     P ++T+  +ID   K    D+   +F+    +  K  + 
Sbjct: 626 KSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVV 685

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            ++S+I  +GK     +A  + +++     TP+  T+ C++      + ++ A   F  +
Sbjct: 686 VYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSM 745

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
             L       T + ++   C      +A + ++    +G+ P++ TY  +     KA   
Sbjct: 746 KDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNI 805

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
                L  R + NG +P+   +   +E  SS+
Sbjct: 806 LEASGLFSRFKANGGIPDSASYNAMIEGLSSA 837



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 122/288 (42%), Gaps = 5/288 (1%)

Query: 23  KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82
           K G+T     LF E+   G  PD   Y+ LI    H   KA    +    F  MK  + C
Sbjct: 556 KAGETEKGRALFREINAHGFIPDARSYSILI----HGLVKAGLANETYELFYAMK-EQGC 610

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
             +   YN ++    ++  V++   L +E+      P + TY  V+D   K   + E   
Sbjct: 611 VLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYM 670

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +    KSN  K +++ ++ LID +GK    D+   + + LM     P + T+N ++    
Sbjct: 671 LFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALV 730

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           KA    +A   FQ M  +K  P+ ITY  +I         ++A   + E+ KLG      
Sbjct: 731 KAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTI 790

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           T   M+      G   EA  LF      G  PDS++Y  + +  + AN
Sbjct: 791 TYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSAN 838



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 149/352 (42%), Gaps = 28/352 (7%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI-------- 53
           QK +  I     Y+ ++  +GKK +   A+ +F EM+     P+   YN LI        
Sbjct: 361 QKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDMLCREGK 419

Query: 54  -TAHLHTRDKAKALAKALGYFQKMKGMERCK--PNIVTYNILLRACAQARNVDQVNALFK 110
             A L  RD                 MER    PN++T NI++    +A+ +++  ++F+
Sbjct: 420 LNAALEIRDD----------------MERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFE 463

Query: 111 ELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170
            + + +  P+  T++ ++D  GK G + +  S+  +M      P  I +  LI S+ K  
Sbjct: 464 GMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCG 523

Query: 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
             +   +++K ++H+   P L   N+ +    KA    K   +F+++ A  + P   +Y 
Sbjct: 524 RKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYS 583

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
            +I         +   E+F  + + G  +     NA+++ +C +G   +A  L E     
Sbjct: 584 ILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVK 643

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           G  P   TY  +     K +  +    L +  + NGI  N   +   ++ F 
Sbjct: 644 GHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFG 695



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 131/320 (40%), Gaps = 14/320 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I   G  G+   A  L    +  G  P    YN ++T       K + + +AL  F
Sbjct: 338 YNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTC----LGKKRRVEEALRIF 393

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++MK      PN+ TYNIL+    +   ++    +  ++  + L P++ T N ++D   K
Sbjct: 394 EEMK--RDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCK 451

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              ++E  S+   M    C P+ +TF+ LID  GK    D    +++ ++     P    
Sbjct: 452 AQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIV 511

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC----DNVSRAREIF 249
           + S+I ++ K   +     ++++M     +P       +I  Y  C        + R +F
Sbjct: 512 YTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLT----LINTYMDCVFKAGETEKGRALF 567

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E++  G      + + ++      GL  E   LF      G   D+  Y  +   + K+
Sbjct: 568 REINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKS 627

Query: 310 NMKELVQKLLKRMEQNGIVP 329
                  +LL+ M+  G  P
Sbjct: 628 GKVNKAYQLLEEMKVKGHPP 647



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 93/223 (41%), Gaps = 16/223 (7%)

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI-ITFNLL---IDSYGKR 169
           E +  P+   YN ++    +N     +E +L  M  +   P   I+  L+   + S   R
Sbjct: 120 EKVHCPE--AYNSLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELVANCVKSRKLR 177

Query: 170 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
           +AFD    + +++   K +P    +  +I    + R       +F +M  + Y  +   +
Sbjct: 178 EAFD----IIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLF 233

Query: 230 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289
             +I ++     V  A  + DE+     D  +   N  ++ +   G   + D+ ++  H 
Sbjct: 234 TTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCF---GKAGKVDMSWKFFHE 290

Query: 290 M---GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           M   G+ PD  TY  +     KAN  +   +L +++EQN  VP
Sbjct: 291 MKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVP 333



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 71/161 (44%), Gaps = 5/161 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L+  + K  +   A+  F  M++  C P+   Y+ LI      R       KA  ++
Sbjct: 722 WNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRK----FNKAFVFW 777

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           Q+M+ +   KPN +TY  ++   A+A N+ + + LF     +   PD  +YN +++    
Sbjct: 778 QEMQKL-GLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSS 836

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
                +  ++    +   C     T  +L+D+  K +  ++
Sbjct: 837 ANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECLEQ 877


>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 719

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 146/314 (46%), Gaps = 5/314 (1%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           L+  +  K   R A  L  +    G +PD + +N  +   +   D    +   L  F + 
Sbjct: 363 LLCCLSSKNMAREAGALLKKFGKIGHKPDSATFNIAMNCLIKGFD-LNEVCNILDRFVE- 420

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +GM   K    TY  L++A   A  V + N  F ++ +  L  ++ +YN V+D + K  M
Sbjct: 421 QGM---KFGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSM 477

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           + +  +    M+     P+++TFN LID Y K     K   +   L+    KP + TF+S
Sbjct: 478 MDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSS 537

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           +I    +A+    A   F +M     +P+ +TY  +I       +V R+ ++  ++   G
Sbjct: 538 IIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTDG 597

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
            +  V + NA+++++C  G   +A  LF +  ++G+ PD+ TY    K + ++      +
Sbjct: 598 INPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFNEAK 657

Query: 317 KLLKRMEQNGIVPN 330
           +L   ME NG +P+
Sbjct: 658 ELFLSMEANGCMPD 671



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 122/288 (42%), Gaps = 12/288 (4%)

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +K +A+  G   K  G    KP+  T+NI +    +  ++++V  +     E  +     
Sbjct: 369 SKNMAREAGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFS 428

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++ A    G + E     ++M  +    ++ ++N++ID + K    DK    FK +
Sbjct: 429 TYLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEM 488

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
            +    P L TFN++I  Y K     K+  +   +    + P   T+  II      D +
Sbjct: 489 QYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSII------DGL 542

Query: 243 SRAREI------FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
            RA++I      F E+   G      T N ++ + C+ G    +  L       G+ PD 
Sbjct: 543 CRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDV 602

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            ++  L +++ +    E  +KL   M   G++P+   ++  ++ F  S
Sbjct: 603 FSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQS 650



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 88/181 (48%), Gaps = 5/181 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  +  +  D   +S +I  + +  Q   A+  FSEM   G  P+   YN LI    H+ 
Sbjct: 522 MLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILI----HSL 577

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
                + +++   +KM+  +   P++ ++N L+++  +   V+    LF  +    L PD
Sbjct: 578 CIIGDVPRSMKLLRKMQ-TDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPD 636

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
            YTY   +  + ++G   E + +   M++N C PD  T N+++D+  K+  F+  +++ K
Sbjct: 637 NYTYVAFIKVFCQSGRFNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQFEAAQKIAK 696

Query: 181 S 181
           +
Sbjct: 697 T 697



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/384 (19%), Positives = 149/384 (38%), Gaps = 55/384 (14%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           +  D  +   L   + +KG   L++ L  +++ SG R +  +   LI +          L
Sbjct: 143 FAKDQSVKGVLANCLYRKGPVVLSVELLKDIKASGYRINEELLCILIGSWGRL-----GL 197

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           AK               P+   YN ++ A  ++ ++D     F+++      PD +TYN 
Sbjct: 198 AKYCDEIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNI 257

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++    ++G++ E   ++ +M+     P++ T+ +LID +   +  D+  +V +++   K
Sbjct: 258 LIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARK 317

Query: 187 EKPTLPTFNSMIINYGKARLQGKA----------EYVFQKMTA----------------- 219
             P+  T  S I    +     KA          E V Q++                   
Sbjct: 318 VSPSEATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQRLACDTLLCCLSSKNMAREAG 377

Query: 220 --------MKYTPSFITY----ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
                   + + P   T+     C+I  +    +++    I D   + G     ST  A+
Sbjct: 378 ALLKKFGKIGHKPDSATFNIAMNCLIKGF----DLNEVCNILDRFVEQGMKFGFSTYLAL 433

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           ++A  M G  TE +  F      G+  +  +Y ++   + K +M +      K M+  GI
Sbjct: 434 IKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGI 493

Query: 328 VPNKRFFLEALETFSSSLAGSQSG 351
            PN       L TF++ + G   G
Sbjct: 494 PPN-------LVTFNTLIDGYCKG 510



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 106/243 (43%), Gaps = 5/243 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I    K      A   F EM+  G  P+   +N LI  +    +  K+  + L   
Sbjct: 465 YNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKS--RDLLVM 522

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
               G    KP+I T++ ++    +A+ ++     F E+    L+P+  TYN ++ +   
Sbjct: 523 LLEHGF---KPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCI 579

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +     +L +M+++   PD+ +FN LI S+ +    +  +++F S++     P   T
Sbjct: 580 IGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYT 639

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + + I  + ++    +A+ +F  M A    P   T   I+      D    A++I    S
Sbjct: 640 YVAFIKVFCQSGRFNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQFEAAQKIAKTCS 699

Query: 254 KLG 256
           + G
Sbjct: 700 EWG 702


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 169/370 (45%), Gaps = 26/370 (7%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   +  LI  + K G+ + A  LF  M      P+ +VYN+LI A+    D ++A+A
Sbjct: 284 VPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMA 343

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNG 126
                F +++  E   P++ TY+IL+R  C+ +R  +  N   K   E ILA  + TYN 
Sbjct: 344 ----LFLELERFE-VSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSV-TYNS 397

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++D   K G + +   + S+M  N  +P++ITF+ LID Y K +       ++  ++   
Sbjct: 398 LIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKS 457

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
             P + T+ +MI  + K     +A  ++  M     TP+  T  C++   G C +  +S 
Sbjct: 458 LSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLD--GLCKDGKISD 515

Query: 245 AREIFDELSKL--------GKDMKVSTLN-----AMLEAYCMNGLPTEADLLFENSHNMG 291
           A E+F E  +             K S  N     A++   C +G  ++A  LF +    G
Sbjct: 516 ALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYG 575

Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSG 351
           + PD   Y ++ +   +  +K ++  L   M + G++PN    +   E +  S     + 
Sbjct: 576 LQPDEVIYVVMLRGLFQ--VKYILMMLHADMLKFGVIPNSAVHVILCECYQESGFLKSAQ 633

Query: 352 SAKTDLTRSL 361
           +   DL  +L
Sbjct: 634 NCSKDLEENL 643



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 135/295 (45%), Gaps = 11/295 (3%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           L+ V+ K G+  L   ++ EM ++G  P    +  LI       D    L +A   F +M
Sbjct: 153 LLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGD----LLRAQEMFDEM 208

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           + ++   P ++ Y IL+R       +++  ++ + + E  + P++YTYN +MD Y K   
Sbjct: 209 R-VKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLAN 267

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
            K+   +   M      PD++TF +LID   K         +F +++     P +  +NS
Sbjct: 268 AKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNS 327

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE---IFDELS 253
           +I  Y K     +A  +F ++   + +P   TY   I + G C +VSR  E   IF++++
Sbjct: 328 LIDAYCKVGDVSEAMALFLELERFEVSPDVFTYS--ILIRGLC-SVSRTEEAGNIFEKMT 384

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           K G      T N++++  C  G   +A  +       GV P+  T+  L   Y K
Sbjct: 385 KEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCK 439



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 129/296 (43%), Gaps = 5/296 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ LI  +    +   A  +   MR  G  P+   YN L+  +     K     +AL  
Sbjct: 219 VYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYC----KLANAKQALRL 274

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           +Q M G E   P++VT+ IL+    +   +     LF  + +  + P+I  YN ++DAY 
Sbjct: 275 YQDMLG-EGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYC 333

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G + E  ++   ++  +  PD+ T+++LI         ++   +F+ +          
Sbjct: 334 KVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSV 393

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+NS+I    K     KA  +  +MT     P+ IT+  +I  Y    N+  A  I+ E+
Sbjct: 394 TYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEM 453

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
                   V T  AM++ +C  G   EA  L+ +  + G+TP+  T   L     K
Sbjct: 454 VIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCK 509



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 145/320 (45%), Gaps = 11/320 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +  LI    ++G    A  +F EMR  G  P   VY  LI   L + +K +  A+++   
Sbjct: 185 FGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRG-LCSDNKIEE-AESMHRA 242

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +  G+    PN+ TYN L+    +  N  Q   L++++    L PD+ T+  ++D   K
Sbjct: 243 MREVGV---YPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCK 299

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +K   ++   M      P+I  +N LID+Y K     +   +F  L   +  P + T
Sbjct: 300 FGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFT 359

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDE 251
           ++ +I          +A  +F+KMT      + +TY  +I   G C    + +A EI  +
Sbjct: 360 YSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLID--GCCKEGKMDKALEICSQ 417

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-AN 310
           +++ G +  V T + +++ YC       A  ++       ++PD  TY  +   + K  +
Sbjct: 418 MTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGS 477

Query: 311 MKELVQKLLKRMEQNGIVPN 330
           MKE + KL   M  NGI PN
Sbjct: 478 MKEAL-KLYSDMLDNGITPN 496



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 132/300 (44%), Gaps = 13/300 (4%)

Query: 34  FSEM-RNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           FSE+ R    +  P+VY  LI        K + + +AL  + K+         I   N+L
Sbjct: 102 FSELSRLKSSKFTPNVYGELIIVLC----KMELVEEALSMYHKVGA----ALTIQACNVL 153

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           L    +    + +  +++E+  + L+P + T+  ++D   + G +   + +   M+    
Sbjct: 154 LYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGI 213

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            P +I + +LI         ++ E + +++      P + T+N+++  Y K     +A  
Sbjct: 214 VPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALR 273

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
           ++Q M      P  +T+  +I   G C    +  AR +F  + K      ++  N++++A
Sbjct: 274 LYQDMLGEGLVPDVVTFGILID--GLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDA 331

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           YC  G  +EA  LF       V+PD  TY +L +     +  E    + ++M + GI+ N
Sbjct: 332 YCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILAN 391


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 140/318 (44%), Gaps = 21/318 (6%)

Query: 1   MQKQRWYIADTGI------YSKLIAVMGK--KGQTRLAMWLFSEMRNSGCRPDPSVYNAL 52
           + + R  I D G       YS LI+ + +  +G +  A+ LF  +   G  P+   YN L
Sbjct: 131 VDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSE-ALKLFGSVLKQGYEPEVPTYNIL 189

Query: 53  ITAHLHTRDKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFK 110
           I   L    K   + +A   F  +   G+E   P+ +TY + +    +A  V+    + K
Sbjct: 190 IDGLL----KEDRVNEAFELFSGLVKHGLE---PDAITYTVFIDGLCKAGRVEDALLMLK 242

Query: 111 ELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170
           ++ E    PD+ ++N V++   K   + E E +LS M++  C P+ I+FN LI    +  
Sbjct: 243 DMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAG 302

Query: 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK---AEYVFQKMTAMKYTPSFI 227
            + K    FK ++    KPT+ T+N ++    KAR +G+   A  +F  M      P  +
Sbjct: 303 KWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVV 362

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           TY  +I   G    +  AR +   +   G    V T N+++   C      EA  LF   
Sbjct: 363 TYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAM 422

Query: 288 HNMGVTPDSSTYKLLYKA 305
              G  PD+ TY  +  A
Sbjct: 423 VEKGCVPDTITYGTIISA 440



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 118/250 (47%), Gaps = 8/250 (3%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           PN +TYN LL        +    AL++ + ++  +PD+ TYN ++  + K G + E   +
Sbjct: 8   PNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKI 67

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
                     PD++T+N LI+ + K    D+ +++ + ++     P + T+NS++    K
Sbjct: 68  FDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCK 127

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC---DNVSRAREIFDELSKLGKDMK 260
               G+ +     +    ++P+ ITY  +I+  G C     VS A ++F  + K G + +
Sbjct: 128 ---NGRVDEARMLIVDKGFSPNVITYSTLIS--GLCRELRGVSEALKLFGSVLKQGYEPE 182

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
           V T N +++         EA  LF      G+ PD+ TY +      KA   E    +LK
Sbjct: 183 VPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLK 242

Query: 321 RMEQNGIVPN 330
            M++ G VP+
Sbjct: 243 DMDEKGCVPD 252



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 139/333 (41%), Gaps = 16/333 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--D 61
           +R ++ D   Y+ LI    K  +   A  +   M +    PD   YN+L+         D
Sbjct: 73  KRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVD 132

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPD 120
           +A+ L    G+           PN++TY+ L+   C + R V +   LF  + +    P+
Sbjct: 133 EARMLIVDKGF----------SPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPE 182

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TYN ++D   K   + E   + S +  +  +PD IT+ + ID   K    +    + K
Sbjct: 183 VPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLK 242

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +      P + + N++I    K +   +AE +   M A   +P+ I++  +I       
Sbjct: 243 DMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAG 302

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYC---MNGLPTEADLLFENSHNMGVTPDSS 297
              +A   F E+ K G    V T N +++  C     G   EA  LF+     G  PD  
Sbjct: 303 KWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVV 362

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           TY  L     KA   +  ++LL  ME  G +PN
Sbjct: 363 TYSALIDGLGKAGKLDDARRLLGAMEAKGCIPN 395



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 132/300 (44%), Gaps = 11/300 (3%)

Query: 37  MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 96
           MR  G  P+   YNAL++   +       ++ A   +++M       P++VTYN LL   
Sbjct: 1   MRKHGFWPNRITYNALLSGLCN----GGRMSDAQALYERMIKAGY-SPDVVTYNTLLHGF 55

Query: 97  AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
            +   +D+   +F    +    PD+ TYN +++ + K   + E + +L RM S    PD+
Sbjct: 56  CKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDV 115

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV--F 214
           +T+N L++   K    D+   +   ++     P + T++++I    +  L+G +E +  F
Sbjct: 116 VTYNSLVNGLCKNGRVDEARML---IVDKGFSPNVITYSTLISGLCR-ELRGVSEALKLF 171

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
             +    Y P   TY  +I      D V+ A E+F  L K G +    T    ++  C  
Sbjct: 172 GSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKA 231

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           G   +A L+ ++    G  PD  ++  +     K    +  + LL  ME  G  PN   F
Sbjct: 232 GRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISF 291



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 141/326 (43%), Gaps = 27/326 (8%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L++ +   G+   A  L+  M  +G  PD   YN L    LH   K   L +AL  F
Sbjct: 13  YNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTL----LHGFCKVGELDEALKIF 68

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
                +G     P++VTYN L+    +A  +D+   + + +    L PD+ TYN +++  
Sbjct: 69  DGAVKRGF---VPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGL 125

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-QAFDKMEQVFKSLMHSKEKPT 190
            KNG + E   ++         P++IT++ LI    +  +   +  ++F S++    +P 
Sbjct: 126 CKNGRVDEARMLIV---DKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPE 182

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           +PT+N +I    K     +A  +F  +      P  ITY   I      D + +A  + D
Sbjct: 183 VPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFI------DGLCKAGRVED 236

Query: 251 ELSKLGKDM-------KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            L  L KDM        V + NA++   C      EA++L       G +P++ ++  L 
Sbjct: 237 ALLML-KDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLI 295

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVP 329
               +A   +      K M + G+ P
Sbjct: 296 CGQCRAGKWKKAMTTFKEMLKRGVKP 321



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 140/330 (42%), Gaps = 18/330 (5%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ L+  + K G+   A  L  +    G  P+   Y+ LI+       + + ++
Sbjct: 112 VPDVVTYNSLVNGLCKNGRVDEARMLIVD---KGFSPNVITYSTLISGLCR---ELRGVS 165

Query: 68  KALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           +AL  F  +  +G E   P + TYNIL+    +   V++   LF  L +  L PD  TY 
Sbjct: 166 EALKLFGSVLKQGYE---PEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYT 222

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
             +D   K G +++   +L  M    C PD+++ N +I+   K +  D+ E +   +   
Sbjct: 223 VFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAK 282

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC-----D 240
              P   +FN++I    +A    KA   F++M      P+ +TY  ++   G C      
Sbjct: 283 GCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVD--GLCKARQEG 340

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            +  A  +FD + + G+   V T +A+++     G   +A  L       G  P+  TY 
Sbjct: 341 RIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYN 400

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            L          +   +L   M + G VP+
Sbjct: 401 SLISGLCGLEKVDEALELFVAMVEKGCVPD 430


>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 532

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 136/300 (45%), Gaps = 4/300 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           +T  ++ LI  + + G+      LF+ M++ GC PD   YN LI+       KA  L +A
Sbjct: 197 NTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLC----KANELDRA 252

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               ++++    C P+++TY  ++    +   ++  + LF+E+  S + P + T+N ++D
Sbjct: 253 CDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLID 312

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +GK G +   E++  +M S  C PD++TF  LID Y +        +V+  +      P
Sbjct: 313 GFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSP 372

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T++ +I    K     +A  + +++      P    Y  +I  +    NV  A  I 
Sbjct: 373 NIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIV 432

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+ +        T   ++  +CM G   EA  +F+    +G  PD+ T   L     KA
Sbjct: 433 TEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKMLAIGCAPDNITISSLVACLLKA 492



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 143/323 (44%), Gaps = 14/323 (4%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ L+  + K G+   A++LF E       P+   +N LI        +   + K    
Sbjct: 165 VYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLC----RVGEVEKGFEL 220

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH-ESILAPDIYTYNGVMDAY 131
           F  M+    C P++VTYN L+    +A  +D+   L KE+   +  +PD+ TY  ++  +
Sbjct: 221 FNAMQSFG-CLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGF 279

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G ++    +   M  +  +P ++TFN+LID +GK       E + + +      P +
Sbjct: 280 RKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDV 339

Query: 192 PTFNSMIINY---GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
            TF S+I  Y   G  RL  K   V+  M A   +P+  TY  II      + +  AR++
Sbjct: 340 VTFTSLIDGYCRTGDIRLGLK---VWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDL 396

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT- 307
             +L       K    N +++ +C  G   EA+++          PD  T+ +L   +  
Sbjct: 397 LRQLKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCM 456

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           K  M E +  + K+M   G  P+
Sbjct: 457 KGRMVEALD-IFKKMLAIGCAPD 478



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 156/368 (42%), Gaps = 22/368 (5%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           ++ D+ +   L+    + G+  LA  L  E++    R    VYN L    L+   K   +
Sbjct: 124 HLIDSRVLGFLVTSFAQAGKFDLAKKLIIEVQGEEARISSFVYNYL----LNELVKGGKV 179

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            +A+  F++        PN  T+NIL+R   +   V++   LF  +      PD+ TYN 
Sbjct: 180 HEAIFLFKENLAFHS-PPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNT 238

Query: 127 VMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
           ++    K   +     +L  ++S N C PD++T+  +I  + K    +    +F+ ++ S
Sbjct: 239 LISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRS 298

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
             +PT+ TFN +I  +GK      AE + +KM +    P  +T+  +I  Y    ++   
Sbjct: 299 GIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLG 358

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            +++D +        + T + ++ A C +    EA  L        V P    Y  +   
Sbjct: 359 LKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVIDG 418

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFF-------------LEALETFSSSLAGSQSGS 352
           + KA   +    ++  ME+    P+K  F             +EAL+ F   LA    G 
Sbjct: 419 FCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKMLA---IGC 475

Query: 353 AKTDLTRS 360
           A  ++T S
Sbjct: 476 APDNITIS 483



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 95/202 (47%), Gaps = 5/202 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI   GK G    A  +  +M +  C PD   + +LI  +  T D    +   L  +
Sbjct: 307 FNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGD----IRLGLKVW 362

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             MK      PNI TY++++ A  +   + +   L ++L  S + P  + YN V+D + K
Sbjct: 363 DVMKA-RNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVIDGFCK 421

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + E   +++ M+  +C+PD +TF +LI  +  +    +   +FK ++     P   T
Sbjct: 422 AGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKMLAIGCAPDNIT 481

Query: 194 FNSMIINYGKARLQGKAEYVFQ 215
            +S++    KA    +A ++ Q
Sbjct: 482 ISSLVACLLKAGKPSEAFHIVQ 503



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 1/220 (0%)

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++ +  + G+   +E V+  M+S+    D      L+ S+ +   FD  +++   +
Sbjct: 95  TYELLIRSLCQMGLHDLVEMVIGYMRSDGHLIDSRVLGFLVTSFAQAGKFDLAKKLIIEV 154

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
              + + +   +N ++    K     +A ++F++  A    P+  T+  +I        V
Sbjct: 155 QGEEARISSFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEV 214

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYC-MNGLPTEADLLFENSHNMGVTPDSSTYKL 301
            +  E+F+ +   G    V T N ++   C  N L    DLL E       +PD  TY  
Sbjct: 215 EKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTS 274

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           +   + K    E    L + M ++GI P    F   ++ F
Sbjct: 275 IISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGF 314


>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1071

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 147/352 (41%), Gaps = 40/352 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I    K+G+   A  +F EM      P+   YNALI  H H  +  +AL       
Sbjct: 276 YNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALT-----I 330

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M      KPN V+Y+ LL    +    +   ++ + +  + +      Y  ++D   +
Sbjct: 331 LEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCR 390

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           NG++ E   +L +M  +   PD++TF++LI+ + +      ++++   +  +   P    
Sbjct: 391 NGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSII 450

Query: 194 FNSMIINYGK--------------ARLQ---------------------GKAEYVFQKMT 218
           + ++I NY K              +R+                      G AEY F  M+
Sbjct: 451 YTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNVLVSSLCKDGKVGVAEYFFHHMS 510

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
            +   P+ IT++CII  YG   N  +A  +FDE+ K G      T   +L+A C  G   
Sbjct: 511 KIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLLKALCRAGKFK 570

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           EA  L +  H +    D+ TY  +     K+ M      L   M Q  ++P+
Sbjct: 571 EAKRLLDKLHYIPSAVDTVTYNTILVETFKSGMLTDAVALFDEMVQRNVLPD 622



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 156/361 (43%), Gaps = 40/361 (11%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           ++  ++  LI V  ++G    A+  F  M   G  P     N L+   +    K + +  
Sbjct: 96  SNPSVFDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLV----KERKVGA 151

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
              +F++M     C P++ T+NIL+        + +   L K++ ES   P + TYN V+
Sbjct: 152 VWLFFKEMLARRVC-PDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVL 210

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + Y K G  K    ++ +M S   + D  T+N+L+D   K     K   + K +      
Sbjct: 211 NWYCKKGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMIS 270

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   T+NS+I  + K    G A  +FQ+M+ +   P+ +TY  +I  + +  N  +A  I
Sbjct: 271 PNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTI 330

Query: 249 FD---------------------------ELSK-LGKDMKVSTL-------NAMLEAYCM 273
            +                           ELSK + + M+++ +        AM++  C 
Sbjct: 331 LEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCR 390

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
           NGL  E+  L +     GV PD  T+ +L   + +    + V++++ +M + G+ PN   
Sbjct: 391 NGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSII 450

Query: 334 F 334
           +
Sbjct: 451 Y 451



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/359 (19%), Positives = 149/359 (41%), Gaps = 7/359 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++  Y+     Y+ ++    KKG+ + A+ L  +M + G   D   YN L+       D 
Sbjct: 195 EESGYVPSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEADACTYNMLVD------DL 248

Query: 63  AKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            K    A GY    K  +R   PN +TYN ++    +   +     +F+E+    L P+ 
Sbjct: 249 CKNNRSAKGYLLLKKMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNC 308

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            TYN ++D +  +G  ++  ++L  M++   KP+ ++++ L++   +   F+  + + + 
Sbjct: 309 VTYNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILER 368

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           +  +        + +MI    +  L  ++  +  KM      P  +T+  +I  +     
Sbjct: 369 MRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGK 428

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +   +EI  ++ K G          ++  YC  G   EA  ++     +G   +     +
Sbjct: 429 IKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNV 488

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRS 360
           L  +  K     + +     M + G VPN   F   +  + +S  G ++ S   ++ ++
Sbjct: 489 LVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIKA 547



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 122/295 (41%), Gaps = 5/295 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L+  + +  +  L+  +   MR +G       Y A+I        +   L +++   
Sbjct: 346 YSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLC----RNGLLNESVKLL 401

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM   +   P++VT+++L+    +   +  V  +  +++++ LAP+   Y  ++  Y K
Sbjct: 402 DKMLK-DGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCK 460

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + E   V   M       +    N+L+ S  K       E  F  +      P   T
Sbjct: 461 TGDVVEAFKVYVAMSRIGYDANCFICNVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSIT 520

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           F+ +I  YG +    KA  +F +M    + PS  TY  ++           A+ + D+L 
Sbjct: 521 FDCIINGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLLKALCRAGKFKEAKRLLDKLH 580

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            +   +   T N +L     +G+ T+A  LF+      V PDS TY +++    +
Sbjct: 581 YIPSAVDTVTYNTILVETFKSGMLTDAVALFDEMVQRNVLPDSYTYAIIFAGLIR 635



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 123/322 (38%), Gaps = 75/322 (23%)

Query: 42  CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN 101
           C+ +PSV++ LI  +L    +   +  AL  F+ M G+    P++ T N+LL    + R 
Sbjct: 94  CKSNPSVFDLLIRVYL----REGMVGDALETFRLM-GIRGFNPSVYTCNMLLGKLVKERK 148

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
           V  V   FKE                                   M + +  PD+ TFN+
Sbjct: 149 VGAVWLFFKE-----------------------------------MLARRVCPDVSTFNI 173

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG-----KARLQ--------- 207
           LI+         K   + K +  S   P++ T+N+++  Y      KA L+         
Sbjct: 174 LINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGRYKAALELIDQMGSKG 233

Query: 208 ---------------------GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
                                 K   + +KM     +P+ ITY  II  +     +  A 
Sbjct: 234 IEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNSIINGFVKEGKIGAAT 293

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            IF E+S L       T NA+++ +C +G   +A  + E     G  P+  +Y  L    
Sbjct: 294 RIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSYSALLNGL 353

Query: 307 TKANMKELVQKLLKRMEQNGIV 328
            +    EL + +L+RM  NG++
Sbjct: 354 CRHAKFELSKSILERMRMNGMI 375



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 128/320 (40%), Gaps = 5/320 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            DT  Y+ ++    K G    A+ LF EM      PD   Y A+I A L  R K  A   
Sbjct: 586 VDTVTYNTILVETFKSGMLTDAVALFDEMVQRNVLPDSYTY-AIIFAGLIRRGKMVA--- 641

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL ++  + G     P  V Y   +    +A          +++ ++ L  D+   N ++
Sbjct: 642 ALHFYGNLLGKGAVSPEKVMYTTFVDGLFRAGQSKAALYFCEDMEKNGLCADLIATNVIL 701

Query: 129 DAYGKNGMIKEMESVLSRMKSN-QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           + Y + G + +   + + M S     P + T+N+L+  Y K++   K   ++  +M +  
Sbjct: 702 NGYSRMGKMAKAGDIFTMMWSGITISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGI 761

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P   T +S+I+ + K+ +      + +KM          T+  +I  Y   D V +A +
Sbjct: 762 FPDKLTCHSLILGFCKSAMLDVGLKLLKKMLLDGVAVDQCTFNMLIMKYCETDEVGKAFD 821

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + + ++       ++T ++++          E+ LL       G  PD   Y  L     
Sbjct: 822 LVNIMNLFDIFPDMTTHDSIISVLSRVSTVQESHLLLHEMLERGCIPDRRQYIALVNRMC 881

Query: 308 KANMKELVQKLLKRMEQNGI 327
           +        KL   ME  GI
Sbjct: 882 RMGHIHGAFKLKDEMEALGI 901



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 140/333 (42%), Gaps = 13/333 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y A+  I + L++ + K G+  +A + F  M   G  P+   ++ +I  + ++ +  KA 
Sbjct: 479 YDANCFICNVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAF 538

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           +     F +M       P+  TY  LL+A  +A    +   L  +LH    A D  TYN 
Sbjct: 539 S----MFDEMIKAGH-HPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNT 593

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH-- 184
           ++    K+GM+ +  ++   M      PD  T+ ++     +R         + +L+   
Sbjct: 594 ILVETFKSGMLTDAVALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAALHFYGNLLGKG 653

Query: 185 --SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
             S EK    TF   +   G+++    A Y  + M         I    I+  Y     +
Sbjct: 654 AVSPEKVMYTTFVDGLFRAGQSK---AALYFCEDMEKNGLCADLIATNVILNGYSRMGKM 710

Query: 243 SRAREIFDEL-SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           ++A +IF  + S +     ++T N +L  Y      ++   L+      G+ PD  T   
Sbjct: 711 AKAGDIFTMMWSGITISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKLTCHS 770

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           L   + K+ M ++  KLLK+M  +G+  ++  F
Sbjct: 771 LILGFCKSAMLDVGLKLLKKMLLDGVAVDQCTF 803



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 76/180 (42%)

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
           CK +   F+LLI  Y +        + F+ +      P++ T N ++    K R  G   
Sbjct: 94  CKSNPSVFDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLVKERKVGAVW 153

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
             F++M A +  P   T+  +I +      + +A  +  ++ + G    V T N +L  Y
Sbjct: 154 LFFKEMLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWY 213

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           C  G    A  L +   + G+  D+ TY +L     K N       LLK+M +  I PN+
Sbjct: 214 CKKGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNE 273



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 76/194 (39%), Gaps = 15/194 (7%)

Query: 10   DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT-----AHLHTRDKAK 64
            D   +  +I+V+ +    + +  L  EM   GC PD   Y AL+       H+H   K K
Sbjct: 834  DMTTHDSIISVLSRVSTVQESHLLLHEMLERGCIPDRRQYIALVNRMCRMGHIHGAFKLK 893

Query: 65   ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
               +ALG               V  + L+R  A+   V++   +   +    L P I T+
Sbjct: 894  DEMEALGI----------SSGDVAESALVRGLAKCGKVEEAKLVLDFMLRKSLIPTIATF 943

Query: 125  NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
              +M  + +N  + E   +   M     K D+I +N+LI             +++K +  
Sbjct: 944  TTLMHMFCRNESLVEALKLKDTMDFCDVKLDVIAYNVLISGLCADGDVASALKLYKEIKQ 1003

Query: 185  SKEKPTLPTFNSMI 198
                P + T+  +I
Sbjct: 1004 RGLWPNMTTYCILI 1017



 Score = 37.7 bits (86), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 52/293 (17%), Positives = 107/293 (36%), Gaps = 49/293 (16%)

Query: 41   GCRPDPSVYNALITAHLHTRDKAKA--LAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
            G   D   +N LI  +  T +  KA  L   +  F          P++ T++ ++   ++
Sbjct: 795  GVAVDQCTFNMLIMKYCETDEVGKAFDLVNIMNLFDIF-------PDMTTHDSIISVLSR 847

Query: 99   ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
               V + + L  E+ E    PD   Y  +++   + G I     +   M++       + 
Sbjct: 848  VSTVQESHLLLHEMLERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDEMEALGISSGDVA 907

Query: 159  FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
             + L+    K    ++ + V   ++     PT+ TF ++                     
Sbjct: 908  ESALVRGLAKCGKVEEAKLVLDFMLRKSLIPTIATFTTL--------------------- 946

Query: 219  AMKYTPSFITYECIITMYGYCDNVS--RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
                            M+ +C N S   A ++ D +      + V   N ++   C +G 
Sbjct: 947  ----------------MHMFCRNESLVEALKLKDTMDFCDVKLDVIAYNVLISGLCADGD 990

Query: 277  PTEADLLFENSHNMGVTPDSSTYKLLYKA-YTKANMKELVQKLLKRMEQNGIV 328
               A  L++     G+ P+ +TY +L  A +T        + LLK +++ G++
Sbjct: 991  VASALKLYKEIKQRGLWPNMTTYCILIDAIFTNDISLAKGEVLLKDLQERGVI 1043


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 148/337 (43%), Gaps = 19/337 (5%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           + ++ D   Y  LI  +  +G    A+ LF+E +    +PD  VYN+L+          K
Sbjct: 344 KGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLV----------K 393

Query: 65  ALAK---ALGYFQKMKGM--ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
            L +    L   Q M  M  E C P+I TYNI++    +  N+     +  +       P
Sbjct: 394 GLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLP 453

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D++T+N ++D Y K   +     ++ RM +    PD+IT+N +++   K     ++ + F
Sbjct: 454 DVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETF 513

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           + ++    +P   T+N +I N+ K     +A  V  +M      P  +++  +I  +G+C
Sbjct: 514 EEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLI--HGFC 571

Query: 240 DN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
            N  +  A  +F +L + G      T N ++ AY        A+ +F    + G  PD  
Sbjct: 572 RNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLY 631

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           TY++L     KA   +     L  M   G VP+   F
Sbjct: 632 TYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATF 668



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 147/327 (44%), Gaps = 13/327 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I D   Y+ +I    K G  + A  L  +    G  PD   Y +LI       D    + 
Sbjct: 312 IPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGD----IE 367

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +AL  F + +  +  KP++V YN L++   +   +     +  E+ E    PDI+TYN +
Sbjct: 368 RALELFNEAQAKD-LKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNII 426

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++   K G I +   V++        PD+ TFN LID Y KR   D   Q+ + +     
Sbjct: 427 INGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGI 486

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYV---FQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
            P + T+NS++    KA   GKA+ V   F++M      P+ ITY  +I  +   + +  
Sbjct: 487 APDVITYNSVLNGLCKA---GKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEE 543

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  +   + + G      + N ++  +C NG    A LLF+     G +  + T+ +L  
Sbjct: 544 ASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIG 603

Query: 305 AY-TKANMKELVQKLLKRMEQNGIVPN 330
           AY +K NM ++ +K+   M   G  P+
Sbjct: 604 AYSSKLNM-QMAEKIFGEMISKGYKPD 629



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 144/342 (42%), Gaps = 30/342 (8%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL---HTRDKAKAL 66
           D  +Y+ L+  + ++G    A+ + +EM   GC PD   YN +I       +  D A  +
Sbjct: 384 DLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVM 443

Query: 67  AKAL----------------GYFQKMKG------MER-----CKPNIVTYNILLRACAQA 99
             A+                GY +++K       +ER       P+++TYN +L    +A
Sbjct: 444 NDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKA 503

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
               +VN  F+E+      P+  TYN +++ + K   ++E   V+ RM  +   PD ++F
Sbjct: 504 GKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSF 563

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
           N LI  + +    D    +F+ L       T  TFN +I  Y        AE +F +M +
Sbjct: 564 NTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMIS 623

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
             Y P   TY  ++       NV RA     E+   G    ++T   ML    MN   +E
Sbjct: 624 KGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSE 683

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
           A  +      MGV P+     L       A  K LV++L+K+
Sbjct: 684 AVAIIHIMVRMGVVPEVVDTILSTDKKEIAAPKILVEELMKK 725



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/402 (22%), Positives = 150/402 (37%), Gaps = 64/402 (15%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R   A    Y  ++  +   G    A  LF EM      PD + +N ++ A     D  
Sbjct: 169 ERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVM 228

Query: 64  KA---LAKAL---------------------GYFQKMKGM-ER----CKPNIVTYNILLR 94
           ++   LAK L                     G  ++   + ER      P++VTYN L+R
Sbjct: 229 ESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGAYVAPDVVTYNTLMR 288

Query: 95  ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
              +   V +       +      PD +TYN ++D Y K+GM++E   +L         P
Sbjct: 289 GLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVP 348

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           D +T+  LI+        ++  ++F        KP L  +NS++    +  L   A  V 
Sbjct: 349 DRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVM 408

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC-- 272
            +M      P   TY  II       N+S A  + ++    G    V T N +++ YC  
Sbjct: 409 NEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKR 468

Query: 273 ----------------------------MNGL-----PTEADLLFENSHNMGVTPDSSTY 299
                                       +NGL       E +  FE     G  P++ TY
Sbjct: 469 LKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITY 528

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            +L + + K N  E    ++ RM Q+G+VP+   F   +  F
Sbjct: 529 NILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGF 570



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 152/370 (41%), Gaps = 57/370 (15%)

Query: 25  GQTRLAMWLFSEMRNSGCRPDPSVYNALIT---AHLHTRDKAKALAKALGYFQKMKGMER 81
           G+  +A+ L   +   GC   P+ Y  ++    AH H  +       A   F +M G + 
Sbjct: 155 GRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYN-------ARHLFDEMLGRD- 206

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKE-------------------------LHESI 116
             P++ T+N +L A  Q  +V +  AL  +                         L E++
Sbjct: 207 VFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAV 266

Query: 117 ---------LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
                    +APD+ TYN +M    K+  ++E    L RM +  C PD  T+N +ID Y 
Sbjct: 267 ALVERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYC 326

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
           K     +  ++ K  +     P   T+ S+I          +A  +F +  A    P  +
Sbjct: 327 KSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLV 386

Query: 228 TYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
            Y  ++   G C    +  A ++ +E+ + G    + T N ++   C  G  ++A ++  
Sbjct: 387 VYNSLVK--GLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMN 444

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 345
           ++   G  PD  T+  L   Y K    +   +L++RM   GI P+       + T++S L
Sbjct: 445 DAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPD-------VITYNSVL 497

Query: 346 AG-SQSGSAK 354
            G  ++G AK
Sbjct: 498 NGLCKAGKAK 507



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 130/332 (39%), Gaps = 44/332 (13%)

Query: 46  PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQV 105
           P     L  A +    +A  L  A+  F++M  +  C P    YN ++ A   A   DQ 
Sbjct: 67  PDSLQPLYVASIQAYARAGRLRAAVDAFERMD-LFACPPAAPAYNAIMDALVNAAYHDQA 125

Query: 106 NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI-- 163
           + ++  +  + +APD  T+   + ++   G       +L  +    C      +  ++  
Sbjct: 126 HKVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRG 185

Query: 164 -----DSYGKRQAFDKM--EQVFKSLMHSKEKPTLPTFNSM---IINYGKARLQGK--AE 211
                  Y  R  FD+M    VF         P + TFN++   +   G     G   A+
Sbjct: 186 LYAHGHGYNARHLFDEMLGRDVF---------PDVATFNNVLHALCQKGDVMESGALLAK 236

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLE 269
            + + M+A K+T       C I + G C++  R  E    + ++G  +   V T N ++ 
Sbjct: 237 VLKRGMSANKFT-------CNIWIRGLCED-GRLEEAVALVERMGAYVAPDVVTYNTLMR 288

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             C +    EA        N G  PD  TY  +   Y K+ M +   +LLK     G VP
Sbjct: 289 GLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVP 348

Query: 330 NKRFFLEALETFSSSLAGSQSGSAKTDLTRSL 361
           ++        T+ S + G     A+ D+ R+L
Sbjct: 349 DR-------VTYCSLINGL---CAEGDIERAL 370



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 140/364 (38%), Gaps = 72/364 (19%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT--RDKA-----KA 65
           +Y   I    + G+ R A+  F  M    C P    YNA++ A ++    D+A     + 
Sbjct: 73  LYVASIQAYARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRM 132

Query: 66  LAKALG-----YFQKMKGM-----------------ER-CKPNIVTYNILLRACAQARNV 102
           LA  +      +  ++K                   ER C      Y  ++R      + 
Sbjct: 133 LAAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHG 192

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR-----MKSNQ------ 151
                LF E+    + PD+ T+N V+ A  + G + E  ++L++     M +N+      
Sbjct: 193 YNARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIW 252

Query: 152 ----CK-------------------PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
               C+                   PD++T+N L+    K     +  Q    +M+    
Sbjct: 253 IRGLCEDGRLEEAVALVERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCI 312

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAR 246
           P   T+N++I  Y K+ +  +A  + +      + P  +TY  +I   G C   ++ RA 
Sbjct: 313 PDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLIN--GLCAEGDIERAL 370

Query: 247 EIFDELSKLGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           E+F+E     KD+K  +   N++++  C  GL   A  +       G  PD  TY ++  
Sbjct: 371 ELFNEAQ--AKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIIN 428

Query: 305 AYTK 308
              K
Sbjct: 429 GLCK 432



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 96/250 (38%), Gaps = 25/250 (10%)

Query: 86  IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT--YNGVMDAYGKNGMIKEMESV 143
           I  Y  L+R    A  +D V+A       S LAPD     Y   + AY + G ++     
Sbjct: 35  IPAYRALIRELVSAGRLDDVDAALASA-RSHLAPDSLQPLYVASIQAYARAGRLRAAVDA 93

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
             RM    C P    +N ++D+       D+  +V+  ++ +   P   T    + ++  
Sbjct: 94  FERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFC- 152

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS---------RAREIFDELSK 254
             L G+         A++   S     C      YC  V           AR +FDE+  
Sbjct: 153 --LTGRPH------VALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEM-- 202

Query: 255 LGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           LG+D+   V+T N +L A C  G   E+  L       G++ +  T  +  +   +    
Sbjct: 203 LGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRL 262

Query: 313 ELVQKLLKRM 322
           E    L++RM
Sbjct: 263 EEAVALVERM 272


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 146/342 (42%), Gaps = 21/342 (6%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           + ++ D   YSK+I  +    +   A  LF EM+ +G  P    Y  LI +      KA 
Sbjct: 447 KGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFC----KAG 502

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            + +A  +F +M   + C PN+VTY  L+ A  +AR V   N LF+ +      P++ TY
Sbjct: 503 LIQQARNWFDEML-RDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTY 561

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKS---------------NQCK-PDIITFNLLIDSYGK 168
             ++D + K G I +   + +RM+                N C+ P+IIT+  L+D   K
Sbjct: 562 TALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCK 621

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
               ++  ++  ++  +  +P    ++++I  + K      A+ VF KM+   Y P+  T
Sbjct: 622 ANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYT 681

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
           Y  +I        +    ++  ++ +      V     M++  C  G   EA  L     
Sbjct: 682 YSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKME 741

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +G  P+  TY  +   + K    E   +L + M   G  PN
Sbjct: 742 EVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPN 783



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 144/338 (42%), Gaps = 21/338 (6%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+   +     Y+ LI    K G  + A   F EM    C P+   Y +LI A+L    K
Sbjct: 480 KKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYL----K 535

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA---- 118
           A+ +  A   F+ M  +E  KPN+VTY  L+    +A  +D+   ++  +   I +    
Sbjct: 536 ARKVFDANKLFEMML-LEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDID 594

Query: 119 ------------PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
                       P+I TY  ++D   K   ++E   +L  M  N C+P+ I ++ LID +
Sbjct: 595 MYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGF 654

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
            K    +  ++VF  +      P L T++S+I +  K +       V  KM     TP+ 
Sbjct: 655 CKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNV 714

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           + Y  +I           A  +  ++ ++G    V T  AM++ +   G   +   L+ +
Sbjct: 715 VIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRD 774

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
             + G  P+  TY++L        + +   +LL  M+Q
Sbjct: 775 MCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQ 812



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 132/273 (48%), Gaps = 18/273 (6%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+  TY+ ++     A  V++   LF+E+ ++ + P +YTY  ++D++ K G+I++  + 
Sbjct: 451 PDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNW 510

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGK-RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
              M  + C P+++T+  LI +Y K R+ FD   ++F+ ++    KP + T+ ++I  + 
Sbjct: 511 FDEMLRDNCTPNVVTYTSLIHAYLKARKVFDA-NKLFEMMLLEGSKPNVVTYTALIDGHC 569

Query: 203 KARLQGKAEYVFQKMTA--------MKY--------TPSFITYECIITMYGYCDNVSRAR 246
           KA    KA  ++ +M          M +        TP+ ITY  ++      + V  A 
Sbjct: 570 KAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAH 629

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+ D +S  G +      +A+++ +C  G    A  +F      G  P+  TY  L  + 
Sbjct: 630 ELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSL 689

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
            K    +LV K+L +M +N   PN   + + ++
Sbjct: 690 FKEKRLDLVLKVLSKMLENSCTPNVVIYTDMID 722



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 144/343 (41%), Gaps = 21/343 (6%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    K  +   A  LF  M   G +P+   Y ALI  H     KA  + KA   +
Sbjct: 526 YTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHC----KAGQIDKACQIY 581

Query: 74  QKMKGM--------------ERCK-PNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
            +M+G                 C+ PNI+TY  L+    +A  V++ + L   +  +   
Sbjct: 582 ARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCE 641

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           P+   Y+ ++D + K G ++  + V  +M      P++ T++ LI+S  K +  D + +V
Sbjct: 642 PNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKV 701

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
              ++ +   P +  +  MI    K     +A  +  KM  +   P+ ITY  +I  +G 
Sbjct: 702 LSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGK 761

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              + +  E++ ++   G      T   ++   C  GL  EA  L +           S+
Sbjct: 762 IGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISS 821

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           Y+ + + + +  +  +   LL  + +N  VP +  +   ++ F
Sbjct: 822 YRKIIEGFNREFITSI--GLLDELSENESVPVESLYRILIDNF 862



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 141/337 (41%), Gaps = 26/337 (7%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           LI    + G   +A+     +++ G +  P+ YNALI   L    +A  L  A    ++M
Sbjct: 176 LIQKCCRNGMWNVALEELGRLKDFGYKASPTTYNALIQVFL----RADKLDTAFLVHREM 231

Query: 77  KG----MERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
                 M+ C      Y++    C   R  D ++ L KE       PD   YN ++    
Sbjct: 232 SNSGFRMDGCTLGCFAYSL----CKAGRCGDALSLLEKEE----FVPDTVFYNRMVSGLC 283

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           +  + +E   +L RM+S  C P+++T+ +L+     +    + +++   +M     P   
Sbjct: 284 EASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNRE 343

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--------VSR 244
            FNS++  Y K+R    A  +F+KM      P ++ Y   I +   C N        +  
Sbjct: 344 MFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYN--IFIGSICSNEELPGSDLLEL 401

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A + + E+  LG  +    ++      C  G   +A  +     + G  PD STY  +  
Sbjct: 402 AEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIG 461

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
               A+  E    L + M++NGIVP+   +   +++F
Sbjct: 462 FLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSF 498



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 144/378 (38%), Gaps = 65/378 (17%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I +   Y  L++    KGQ      + S M   GC P+  ++N+L+ A+  +RD + A  
Sbjct: 304 IPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYK 363

Query: 68  KALGYFQKMKGMERCKPNIVTYNILL---------------------------------- 93
                F+KM     C+P  + YNI +                                  
Sbjct: 364 ----LFKKMIKCG-CQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNK 418

Query: 94  -------RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 146
                  R    A   D+   +  E+      PD  TY+ V+        +++   +   
Sbjct: 419 VNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEE 478

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           MK N   P + T+ +LIDS+ K     +    F  ++     P + T+ S+I  Y KAR 
Sbjct: 479 MKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARK 538

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
              A  +F+ M      P+ +TY  +I  +     + +A +I+   +++  D++ S    
Sbjct: 539 VFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIY---ARMQGDIESS---- 591

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
                       + D+ F+   N   TP+  TY  L     KAN  E   +LL  M  NG
Sbjct: 592 ------------DIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNG 639

Query: 327 IVPNKRFFLEALETFSSS 344
             PN+  +   ++ F  +
Sbjct: 640 CEPNQIVYDALIDGFCKT 657


>gi|410110093|gb|AFV61126.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           microcephala]
          Length = 440

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 141/302 (46%), Gaps = 5/302 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF EMR     PD   Y+ LIT H     K      AL + QKM+  +R   ++V Y+ L
Sbjct: 2   LFDEMRQRALSPDRYTYSTLIT-HF---GKEGLFDAALSWLQKME-QDRVPGDLVLYSNL 56

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  S++  MK+   
Sbjct: 57  IELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGV 116

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+  +  +A+ 
Sbjct: 117 MPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 176

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T N+M+  Y 
Sbjct: 177 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 236

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
                 +A+ L +   + G+ P+S TY  +   + K    +    L +++  +GI  ++ 
Sbjct: 237 KTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQI 296

Query: 333 FF 334
            F
Sbjct: 297 LF 298



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 112/224 (50%)

Query: 107 ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
            LF E+ +  L+PD YTY+ ++  +GK G+     S L +M+ ++   D++ ++ LI+  
Sbjct: 1   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
            K   + K   +F  L  S   P L  +N+MI  +GKA+L  +A  +  +M A    P+ 
Sbjct: 61  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNT 120

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
            +Y  ++TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF  
Sbjct: 121 ASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              MG+ P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 224



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 154/327 (47%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 7   RQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 66

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  
Sbjct: 67  SKAIS----IFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTA 121

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 181

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG     
Sbjct: 182 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 241

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + G+  D   ++ +
Sbjct: 242 EKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTM 301

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  +++   +P
Sbjct: 302 IVAYERAGLVAHAKRLLHELKRPDNIP 328



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 147/360 (40%), Gaps = 42/360 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L  EM+ +G  P+ + Y+ L+T ++     
Sbjct: 77  KRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYSTLLTMYVEN--- 133

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 134 -KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 192

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 193 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 252

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           S   +P+ IT++ +I  +GK    D+   +F+ L  S  +     F +MI+ Y +A L  
Sbjct: 253 SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVA 312

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++      P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 313 HAKRLLHELK----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMI 368

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
                    +    +F+    +G  PDS    ++  AY K    +    +   M++ G V
Sbjct: 369 HLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVGCV 428


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 155/369 (42%), Gaps = 39/369 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+  I   GK G   +A   F E++  G +PD   Y ++I        KA  L +A
Sbjct: 248 DIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLC----KAGRLGEA 303

Query: 70  LGYFQKMKG-----------------------------MER-----CKPNIVTYNILLRA 95
              F +M+                              +ER     C P++V++N +L  
Sbjct: 304 EELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTC 363

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
             + R VD+  +LF E+ +    P+  TYN ++D     G ++E   +L  M+     P+
Sbjct: 364 LGKKRKVDEALSLF-EVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPN 422

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
           ++T N+++D   K +  ++  ++F+S       P   T+ S+I   GK     +A  +F+
Sbjct: 423 LLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFE 482

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
           KM    +  + + Y  +I  +          +IF EL + G    ++ LN  ++     G
Sbjct: 483 KMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAG 542

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335
              +  ++FE+  + G  PD  +Y +L    TKA        +   M+Q G   + R + 
Sbjct: 543 EVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYN 602

Query: 336 EALETFSSS 344
             ++ F  S
Sbjct: 603 AVVDGFCKS 611



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 147/327 (44%), Gaps = 12/327 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y     +++ L+  + ++GQ   A+ L  E++ S   PD  +YN  I        KA  +
Sbjct: 210 YEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCF----GKAGNV 265

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             A  +F ++K  +  KP+ V+Y  ++    +A  + +   LF ++      P  Y YN 
Sbjct: 266 DMAWKFFHELKA-QGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNT 324

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  YG  G  ++   +L R++   C P +++FN ++   GK++  D+   +F+ +M   
Sbjct: 325 MIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFE-VMKKD 383

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT---PSFITYECIITMYGYCDNVS 243
            +P   T+N +I       L G+ E  ++ +  M++    P+ +T   ++        + 
Sbjct: 384 AEPNSSTYNIII---DMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLE 440

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A +IF+  S+ G +    T  ++++     G   EA  LFE   + G   +   Y  L 
Sbjct: 441 EAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLI 500

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
           + +     KE   K+ K + + G  P+
Sbjct: 501 RNFFIHGRKEDGHKIFKELIRRGCKPD 527



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/372 (20%), Positives = 151/372 (40%), Gaps = 32/372 (8%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI-TAHLHTRD- 61
           QR    D   Y  LI  +GKKGQ   A  LF +M ++G   +P VY +LI    +H R  
Sbjct: 451 QRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKE 510

Query: 62  -----------------------------KAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
                                        KA  + K    F+ ++      P++ +Y+IL
Sbjct: 511 DGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFL-PDVRSYSIL 569

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +A    + + +F  + +   A D   YN V+D + K+G + +   +L  MK    
Sbjct: 570 IHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCV 629

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           +P + T+  ++D   K    D+   +F+       +  +  ++S+I  +GK     +A  
Sbjct: 630 QPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYL 689

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           + ++M     TP+  T+  ++      + ++ A   F  + ++       T + ++   C
Sbjct: 690 ILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLC 749

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
                 +A + +++    G+ P+  TY  +     K         L +R + NG +P+  
Sbjct: 750 RVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAA 809

Query: 333 FFLEALETFSSS 344
            F   +E  S++
Sbjct: 810 SFNALIEGMSNA 821



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 1/248 (0%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P    Y +L+ A A+AR  ++   L +++ E      ++ +  ++ A  + G + +  +
Sbjct: 176 RPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALA 235

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           ++  +K +  +PDI+ +N+ ID +GK    D   + F  L     KP   ++ SMI    
Sbjct: 236 LVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLC 295

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           KA   G+AE +F +M A +  P    Y  +I  YG       A ++ + L + G    V 
Sbjct: 296 KAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVV 355

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           + N++L          EA  LFE        P+SSTY ++          E   ++L  M
Sbjct: 356 SFNSILTCLGKKRKVDEALSLFE-VMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEM 414

Query: 323 EQNGIVPN 330
           E   + PN
Sbjct: 415 EHASLFPN 422



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 142/364 (39%), Gaps = 41/364 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I   G  G+   A  L   +R  GC P    +N+++T       K + + +AL  F
Sbjct: 322 YNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILT----CLGKKRKVDEALSLF 377

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + MK  +  +PN  TYNI++        V++   +  E+  + L P++ T N ++D   K
Sbjct: 378 EVMK--KDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCK 435

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-------QAFDKM----------- 175
              ++E   +        C PD +T+  LID  GK+       + F+KM           
Sbjct: 436 ARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVV 495

Query: 176 -----------------EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
                             ++FK L+    KP L   N+ +    KA    K   +F+ + 
Sbjct: 496 YTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIR 555

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           +  + P   +Y  +I              IF  + + G  +     NA+++ +C +G   
Sbjct: 556 SYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVH 615

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           +A  + E      V P  +TY  +     K +  +    L +  +  GI  N   +   +
Sbjct: 616 KAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLI 675

Query: 339 ETFS 342
           + F 
Sbjct: 676 DGFG 679



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 146/347 (42%), Gaps = 8/347 (2%)

Query: 23  KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82
           K G+      +F ++R+ G  PD   Y+ LI    H   KA    +    F  MK  +  
Sbjct: 540 KAGEVEKGRMIFEDIRSYGFLPDVRSYSILI----HGLTKAGQARETSNIFHAMK-QQGF 594

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
             +   YN ++    ++  V +   + +E+ E  + P + TY  ++D   K   + E   
Sbjct: 595 ALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYM 654

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +    KS   + +++ ++ LID +GK    D+   + + +M     P + T+NS++    
Sbjct: 655 LFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALV 714

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           KA    +A   FQ M  MK  P+  TY  +I         ++A   + ++ K G    V 
Sbjct: 715 KAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVV 774

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T   M+      G  T+A  LFE     G  PD++++  L +  + AN      ++ +  
Sbjct: 775 TYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEET 834

Query: 323 EQNGIVPNKRFFLEALETFSSSLAGSQS---GSAKTDLTRSLSTAKS 366
              G   N +  +  L+  + S    Q+   G+   ++ +S   ++S
Sbjct: 835 RLRGCRINIKSCISLLDALNKSECLEQAAIVGAVLREIAKSQHASRS 881



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/321 (19%), Positives = 133/321 (41%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           ++  Y+ +I ++   G+   A  +  EM ++   P+    N ++        KA+ L +A
Sbjct: 387 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLC----KARKLEEA 442

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F+       C P+ VTY  L+    +   VD+   LF+++ ++    +   Y  ++ 
Sbjct: 443 YKIFES-ASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIR 501

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +  +G  ++   +   +    CKPD+   N  +D   K    +K   +F+ +      P
Sbjct: 502 NFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLP 561

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + +++ +I    KA    +   +F  M    +      Y  ++  +     V +A EI 
Sbjct: 562 DVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEIL 621

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +E+ +      V+T  A+++         EA +LFE + + G+  +   Y  L   + K 
Sbjct: 622 EEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKV 681

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +    +L+ M + G+ PN
Sbjct: 682 GRIDEAYLILEEMMKKGLTPN 702



 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/128 (20%), Positives = 51/128 (39%)

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           +AR    A      M  +K+ P+F  Y  +I          RA E+  ++ ++G ++ V 
Sbjct: 156 RARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVH 215

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
               ++ A    G   +A  L +      + PD   Y +    + KA   ++  K    +
Sbjct: 216 LFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHEL 275

Query: 323 EQNGIVPN 330
           +  G+ P+
Sbjct: 276 KAQGLKPD 283


>gi|168047776|ref|XP_001776345.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672305|gb|EDQ58844.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 503

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 158/347 (45%), Gaps = 17/347 (4%)

Query: 5   RWY------IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH 58
           RW       + D   ++ L   +G+      A+  F  +          VYN LIT   +
Sbjct: 58  RWVRLHEPCLCDPRSFTILFTFLGRMAMPDQALVFFGMLPKDKQFHSVHVYNTLITCLTN 117

Query: 59  TRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESIL 117
                  L   L +++         P+ VT+++L+ +  +   ++ +V AL++++ +  +
Sbjct: 118 CNRYDLELYHNLAFYEVF-------PDSVTFSVLMNSAVKGGGSLKEVWALYQDMVQRGI 170

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
           +P +  +   + A+   G +KE   + + M+      +++ +N+LID+YG+    ++ E 
Sbjct: 171 SPSVSVFGTFIKAFCDAGRLKEALLITTEMEKLNVPFNVVIYNILIDAYGRVGQLEEAEG 230

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGK---AEYVFQKMTAMKYTPSFITYECIIT 234
           +   +     +P + T+N++I  Y +A+ + +   AE + ++M A    P  +T+  ++ 
Sbjct: 231 LMTEMRERGIQPNVGTYNALITGYLEAKPKRQFVVAEGLIEEMEASGLYPDVVTFTMLLG 290

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
            YG+     +A ++F+ +   G      +  A++ AY     P +A   FE     GV P
Sbjct: 291 AYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINAYAERRCPEKAARAFEMIRKQGVNP 350

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
              TY  L  AY +A   E+VQ + K M+  G V  +  ++  L+ F
Sbjct: 351 TVETYTALLDAYRRAGDLEMVQAVWKSMKVEGCVATRVTYMTILDAF 397



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 149/333 (44%), Gaps = 10/333 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           QR       ++   I      G+ + A+ + +EM       +  +YN LI A+     + 
Sbjct: 167 QRGISPSVSVFGTFIKAFCDAGRLKEALLITTEMEKLNVPFNVVIYNILIDAY----GRV 222

Query: 64  KALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQ---VNALFKELHESILAP 119
             L +A G   +M+  ER  +PN+ TYN L+    +A+   Q      L +E+  S L P
Sbjct: 223 GQLEEAEGLMTEMR--ERGIQPNVGTYNALITGYLEAKPKRQFVVAEGLIEEMEASGLYP 280

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D+ T+  ++ AYG  G+ ++ E V +RMK+   +P+  ++  LI++Y +R+  +K  + F
Sbjct: 281 DVVTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINAYAERRCPEKAARAF 340

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           + +      PT+ T+ +++  Y +A      + V++ M       + +TY  I+  +   
Sbjct: 341 EMIRKQGVNPTVETYTALLDAYRRAGDLEMVQAVWKSMKVEGCVATRVTYMTILDAFQKQ 400

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
                AR++ +E    G    +   N +L +Y   G   +A  +       G  PDS TY
Sbjct: 401 GRYKEARDLIEEFKNQGHKPDLMVYNMLLNSYMRGGRHVKASDILLEMKTAGFLPDSFTY 460

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             L   + +   +    K  + M   G +P+ +
Sbjct: 461 CTLIYGFLRVRDQTKALKYHREMMNRGQLPDPK 493



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 137/328 (41%), Gaps = 48/328 (14%)

Query: 44  PDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARN 101
           PD   ++ L+ + +       +L +    +Q M  +G+    P++  +   ++A   A  
Sbjct: 136 PDSVTFSVLMNSAVK---GGGSLKEVWALYQDMVQRGI---SPSVSVFGTFIKAFCDAGR 189

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
           + +   +  E+ +  +  ++  YN ++DAYG+ G ++E E +++ M+    +P++ T+N 
Sbjct: 190 LKEALLITTEMEKLNVPFNVVIYNILIDAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNA 249

Query: 162 LIDSY----GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           LI  Y     KRQ F   E + + +  S   P + TF  ++  YG   L  +AE VF +M
Sbjct: 250 LITGYLEAKPKRQ-FVVAEGLIEEMEASGLYPDVVTFTMLLGAYGHEGLTEQAEQVFNRM 308

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY------ 271
            A    P+  +Y  +I  Y       +A   F+ + K G +  V T  A+L+AY      
Sbjct: 309 KARGVQPNSYSYTALINAYAERRCPEKAARAFEMIRKQGVNPTVETYTALLDAYRRAGDL 368

Query: 272 --------------CM---------------NGLPTEADLLFENSHNMGVTPDSSTYKLL 302
                         C+                G   EA  L E   N G  PD   Y +L
Sbjct: 369 EMVQAVWKSMKVEGCVATRVTYMTILDAFQKQGRYKEARDLIEEFKNQGHKPDLMVYNML 428

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
             +Y +         +L  M+  G +P+
Sbjct: 429 LNSYMRGGRHVKASDILLEMKTAGFLPD 456



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 116/268 (43%), Gaps = 8/268 (2%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           + L +F+ ++  E C  +  ++ IL     +    DQ    F  L +      ++ YN +
Sbjct: 52  QVLSFFRWVRLHEPCLCDPRSFTILFTFLGRMAMPDQALVFFGMLPKDKQFHSVHVYNTL 111

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ-AFDKMEQVFKSLMHSK 186
           +     N    ++E +   +   +  PD +TF++L++S  K   +  ++  +++ ++   
Sbjct: 112 ITCL-TNCNRYDLE-LYHNLAFYEVFPDSVTFSVLMNSAVKGGGSLKEVWALYQDMVQRG 169

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P++  F + I  +  A    +A  +  +M  +    + + Y  +I  YG    +  A 
Sbjct: 170 ISPSVSVFGTFIKAFCDAGRLKEALLITTEMEKLNVPFNVVIYNILIDAYGRVGQLEEAE 229

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE----ADLLFENSHNMGVTPDSSTYKLL 302
            +  E+ + G    V T NA++  Y +   P      A+ L E     G+ PD  T+ +L
Sbjct: 230 GLMTEMRERGIQPNVGTYNALITGY-LEAKPKRQFVVAEGLIEEMEASGLYPDVVTFTML 288

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
             AY    + E  +++  RM+  G+ PN
Sbjct: 289 LGAYGHEGLTEQAEQVFNRMKARGVQPN 316


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 151/341 (44%), Gaps = 15/341 (4%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           ++ D   Y  LI  +  +G    A+ LF+E +  G +PD  VYN+L+        K   L
Sbjct: 321 FVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLV--------KGLCL 372

Query: 67  -AKALGYFQKMKGM--ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
               L   Q M  M  E C P+I TYNI++    +  N+     +  +       PD++T
Sbjct: 373 QGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFT 432

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           +N ++D Y K   +     ++ RM      PD IT+N +++   K    +++ + F+ ++
Sbjct: 433 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 492

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN-- 241
                P   T+N +I N+ ++    +A  V  KM+     P  +++  +I  YG+C N  
Sbjct: 493 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLI--YGFCRNGD 550

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +  A  +F +L + G      T N ++ A+        A+ +F+   + G   DS TY++
Sbjct: 551 LEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRV 610

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           L     K    +     L  M + G +P+   F   + + +
Sbjct: 611 LIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLT 651



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 150/353 (42%), Gaps = 34/353 (9%)

Query: 6   WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--LHTRDKA 63
           + + D   Y+ LI  + KK   + AM     M N GC PD   YN +I  +  +    +A
Sbjct: 250 YAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEA 309

Query: 64  KALAK----------ALGYFQKMKGM------ERC------------KPNIVTYNILLRA 95
             L K           + Y   + G+      ER             KP+IV YN L++ 
Sbjct: 310 TELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKG 369

Query: 96  -CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
            C Q   +  +  +  E+ E    PDI TYN V++   K G I +   V++        P
Sbjct: 370 LCLQGLILHALQVM-NEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLP 428

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           D+ TFN LID Y KR   D   Q+ + +      P   T+NS++    KA    +    F
Sbjct: 429 DVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETF 488

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           Q+M      P+ ITY  +I  +   + +  A ++  ++S+ G      + N ++  +C N
Sbjct: 489 QEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRN 548

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT-KANMKELVQKLLKRMEQNG 326
           G    A LLF+     G +  + T+  L  A++ K NM  + +K+   M   G
Sbjct: 549 GDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNM-HMAEKIFDEMLSKG 600



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 142/326 (43%), Gaps = 17/326 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL---HTRDKAKAL 66
           D  +Y+ L+  +  +G    A+ + +EM   GC PD   YN +I       +  D    +
Sbjct: 359 DIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVM 418

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             A+     MKG     P++ T+N L+    +   +D    L + + E  +APD  TYN 
Sbjct: 419 NDAI-----MKGY---LPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNS 470

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           V++   K G + E+      M    C P+ IT+N+LI+++ +    ++  +V   +    
Sbjct: 471 VLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEG 530

Query: 187 EKPTLPTFNSMIINYGKAR---LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
             P   +FN++I  YG  R   L+G A  +FQK+    Y+ +  T+  +I  +    N+ 
Sbjct: 531 LHPDAVSFNTLI--YGFCRNGDLEG-AYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMH 587

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A +IFDE+   G      T   +++  C       A +        G  P  ST+  + 
Sbjct: 588 MAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVI 647

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVP 329
            + T  +       ++  M + G+VP
Sbjct: 648 NSLTVNHRVFQAVGIIHIMVKIGVVP 673



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 127/320 (39%), Gaps = 13/320 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  +   G+        +  R+   R  P+  + L  A +    +A  L  A+  F
Sbjct: 17  YCALIRPLASAGRVDAVDAAVASARS---RLSPATIHPLYVASIRAYARAGRLRDAVDAF 73

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M  +  C P    YN ++ A   A   DQ + ++  +  + ++PD++T+   + ++  
Sbjct: 74  ERMD-LFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSF-- 130

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
             +       L  +++   +  +    ++   Y      D   Q+F  ++H+   P L  
Sbjct: 131 -CLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDA-RQLFDQMLHTHVFPNLAA 188

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDE 251
           FN ++    K     +A  +  K+     + +  TY   I + G C+   +  A  + D 
Sbjct: 189 FNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYN--IWIRGLCEAGRLPEAVRLVDG 246

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +        V T N ++   C   +P EA        N G  PD  TY  +   Y K +M
Sbjct: 247 MRAYAVP-DVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISM 305

Query: 312 KELVQKLLKRMEQNGIVPNK 331
            +   +LLK     G VP++
Sbjct: 306 VQEATELLKDAVFKGFVPDQ 325



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 132/361 (36%), Gaps = 61/361 (16%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y   I    + G+ R A+  F  M    C P    YNA++           AL  A  +
Sbjct: 52  LYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIM----------DALVDAAYH 101

Query: 73  FQKMKGMER-----CKPNIVTYNILLRA-CAQAR-------------------------- 100
            Q  K   R       P++ T+ I LR+ C  AR                          
Sbjct: 102 DQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGL 161

Query: 101 ----NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
               +      LF ++  + + P++  +N V+ A  K G + E   +L ++       ++
Sbjct: 162 YAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINL 221

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
            T+N+ I    +     +  ++    M +   P + T+N++I    K  +  +A +  ++
Sbjct: 222 FTYNIWIRGLCEAGRLPEAVRLVDG-MRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRR 280

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC--MN 274
           M      P   TY  II   GYC        +  E ++L KD            YC  +N
Sbjct: 281 MMNQGCLPDDFTYNTIID--GYC-----KISMVQEATELLKDAVFKGFVPDQVTYCSLIN 333

Query: 275 GLPTEADL-----LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           GL  E D+     LF  +   G+ PD   Y  L K      +     +++  M + G  P
Sbjct: 334 GLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHP 393

Query: 330 N 330
           +
Sbjct: 394 D 394


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 135/319 (42%), Gaps = 40/319 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ L+  + K+G+ + A  + + M   G  P    YN L+  +    +  KA    
Sbjct: 262 DAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKA-KHV 320

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L    +M    R  PN  +YNI++    + + VD+   LF E+    +AP   TYN ++D
Sbjct: 321 LSIISRM----RVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLID 376

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K G I     ++  M +N    DI+T+N LID + K Q  DK   + K +     +P
Sbjct: 377 GLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQP 436

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+N +I    K                                      +  A+++F
Sbjct: 437 NMCTYNILIDGLCKG-----------------------------------GQLKNAQDVF 461

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            +L   G ++   T N M+   C  GL  EA++L     + G+ PD+ TY+ + +A    
Sbjct: 462 QDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQALFHK 521

Query: 310 NMKELVQKLLKRMEQNGIV 328
           +  E  QKLL+ M   G+V
Sbjct: 522 DENEKAQKLLREMVIKGVV 540



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 140/310 (45%), Gaps = 9/310 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K GQTR A+ +  ++       +  +Y+ +I        K K +  A G +
Sbjct: 161 YGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLC----KDKLVTDAYGLY 216

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M  ++R  P +VT++ L+              LF E+    + PD YT+N ++DA  K
Sbjct: 217 SEMI-VKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCK 275

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G IKE ++V++ M     +P ++T+N L+D Y       K + V   +   +  P   +
Sbjct: 276 EGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRS 335

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N MI  + K ++  +A  +F +M      P  +TY  +I        +  A E+ DE+ 
Sbjct: 336 YNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMH 395

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA---- 309
                  + T N++++ +C N    +A  L +     G+ P+  TY +L     K     
Sbjct: 396 NNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQLK 455

Query: 310 NMKELVQKLL 319
           N +++ Q LL
Sbjct: 456 NAQDVFQDLL 465



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 121/262 (46%), Gaps = 1/262 (0%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL   ++++G +    N+V Y+ ++    + + V     L+ E+    + P + T++ ++
Sbjct: 177 ALQVLRQIEG-KLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLI 235

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
             +   G  K+   + + M      PD  TFN+L+D+  K     + + V   +M    +
Sbjct: 236 YGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVE 295

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           PT+ T+N+++  Y      GKA++V   ++ M+  P+  +Y  +I  +     V  A  +
Sbjct: 296 PTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCL 355

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F E+   G      T N++++  C  G    A  L +  HN  +  D  TY  L   + K
Sbjct: 356 FHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCK 415

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
               +    L+K+++++GI PN
Sbjct: 416 NQHVDKAIALVKKIKEHGIQPN 437



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 121/288 (42%), Gaps = 35/288 (12%)

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARN-VDQVNALFKELHESILAPDIYTYNGVMDAY 131
           F +M+ + R  P+IV +N +L    + +N    V +L  ++    + PD++T + +++ Y
Sbjct: 54  FNRMRQI-RQTPSIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLSILINCY 112

Query: 132 GKNGMIKEMESVLSR-MKSNQC--------------------KPDIITFNLLIDSYGK-- 168
              G +    SV ++ +K   C                      + +T+ +LI+   K  
Sbjct: 113 CHLGQMTFAFSVFAKILKMGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMG 172

Query: 169 --RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
             R A   + Q+   L+++     +  ++++I    K +L   A  ++ +M   +  P+ 
Sbjct: 173 QTRAALQVLRQIEGKLVNT----NVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTV 228

Query: 227 ITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 284
           +T+  +I  YG+C       A  +F+E+     +    T N +++A C  G   EA  + 
Sbjct: 229 VTFSSLI--YGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVI 286

Query: 285 ENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
                 GV P   TY  L   Y   N     + +L  + +  + PN R
Sbjct: 287 AVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSR 334


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 143/329 (43%), Gaps = 17/329 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L+  + ++G+   A+ L   M   G +P    Y  ++       D   AL       
Sbjct: 187 FTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL----NLL 242

Query: 74  QKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           +KM+ +    PN+V Y+ ++ + C   R+ D  N LF E+ E  + PD++TYN ++  + 
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQN-LFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
            +G   + E +L  M   +  PD++T+N LI+++ K   F +  +++  ++     P   
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTI 361

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+NSMI  + K      AE +F  M     +P   T+  +I  Y     +    E+  E+
Sbjct: 362 TYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEM 421

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            + G      T N ++  +C+ G    A  L +   + GV PD  T   L          
Sbjct: 422 PRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKL 481

Query: 313 ELVQKLLKRMEQ-----------NGIVPN 330
           +   ++ K M++           NG+ P+
Sbjct: 482 KDALEMFKAMQKSKMDLDASHPFNGVEPD 510



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 152/353 (43%), Gaps = 32/353 (9%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M++    I +  IYS +I  + K G+   A  LF+EM+  G  PD   YN++I       
Sbjct: 245 MEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFC--- 301

Query: 61  DKAKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
             +   + A    Q+M  +ER   P++VTYN L+ A  +     +   L+ E+    + P
Sbjct: 302 -SSGRWSDAEQLLQEM--LERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIP 358

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY-GKRQAFDKMEQV 178
           +  TYN ++D + K   +   E +   M +  C PD+ TF  LID Y G ++  D ME  
Sbjct: 359 NTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGME-- 416

Query: 179 FKSLMHSKEKPTL----PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
              L+H   +  L     T+N++I  +        A  + Q+M +    P  +T  C   
Sbjct: 417 ---LLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVT--CNTL 471

Query: 235 MYGYCDN--VSRAREIFDELSKLGKDMKVS-----------TLNAMLEAYCMNGLPTEAD 281
           + G CDN  +  A E+F  + K   D+  S           T N ++      G   EA+
Sbjct: 472 LDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAE 531

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            L+E   + G+ PD+ TY  +     K +  +   ++   M      PN   F
Sbjct: 532 ELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTF 584



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 152/332 (45%), Gaps = 23/332 (6%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRN-SGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           Y  ++  M KKG T  A+ L  +M   S   P+  +Y+A+I +    +D   + A+ L  
Sbjct: 222 YGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSL--CKDGRHSDAQNLFT 279

Query: 73  FQKMKGMERCKPNIVTYN-ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             + KG+    P++ TYN +++  C+  R  D    L +E+ E  ++PD+ TYN +++A+
Sbjct: 280 EMQEKGI---FPDLFTYNSMIVGFCSSGRWSD-AEQLLQEMLERKISPDVVTYNALINAF 335

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G   E   +   M      P+ IT+N +ID + K+   D  E +F  +      P +
Sbjct: 336 VKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDV 395

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIF 249
            TF ++I  Y  A+       +  +M       + +TY  +I  +G+C   +++ A ++ 
Sbjct: 396 FTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLI--HGFCLVGDLNAALDLS 453

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF----------ENSHNM-GVTPDSST 298
            ++   G    + T N +L+  C NG   +A  +F          + SH   GV PD  T
Sbjct: 454 QQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLT 513

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y +L             ++L + M   GIVP+
Sbjct: 514 YNILICGLINEGKFLEAEELYEEMPHRGIVPD 545



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 142/343 (41%), Gaps = 26/343 (7%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R    D   Y+ LI    K+G+   A  L+ EM   G  P+   YN++I      +D+ 
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCK-QDRL 376

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            A A+ + Y    KG   C P++ T+  L+     A+ +D    L  E+    L  +  T
Sbjct: 377 DA-AEDMFYLMATKG---CSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVT 432

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++  +   G +     +  +M S+   PDI+T N L+D            ++FK++ 
Sbjct: 433 YNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQ 492

Query: 184 HSK-----------EKPTLPTFNSMI---INYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
            SK            +P + T+N +I   IN GK     +AE ++++M      P  ITY
Sbjct: 493 KSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFL---EAEELYEEMPHRGIVPDTITY 549

Query: 230 ECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
             +I   G C    +  A ++F  +        V T N ++  YC  G   +   LF   
Sbjct: 550 SSMID--GLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEM 607

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              G+  D+  Y  L   + K         + + M  +G+ P+
Sbjct: 608 GRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPD 650



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 144/340 (42%), Gaps = 22/340 (6%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           + KL+ V+ +  +  L + L+ +M     R D   +N LI            L  AL  F
Sbjct: 82  FCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFC----SCSKLPFALSTF 137

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+  +    P++VT+  LL        V +    F ++ E+   P++ T+  +M+   +
Sbjct: 138 GKITKLGL-HPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCR 196

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-------QAFDKMEQVFKSLMHSK 186
            G I E  ++L RM  +  +P  IT+  ++D   K+           KME+V      S 
Sbjct: 197 EGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEV------SH 250

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
             P +  ++++I +  K      A+ +F +M      P   TY  +I   G+C +   S 
Sbjct: 251 IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIV--GFCSSGRWSD 308

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A ++  E+ +      V T NA++ A+   G   EA  L++     G+ P++ TY  +  
Sbjct: 309 AEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMID 368

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            + K +  +  + +   M   G  P+   F   ++ +  +
Sbjct: 369 GFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGA 408



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 136/303 (44%), Gaps = 8/303 (2%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME-RCKPNIVT 88
           A+ LFS+M  S  RP PSV +      +  R +   L  +L  +QKM+  + RC  +I +
Sbjct: 63  AIDLFSDMLRS--RPLPSVVDFCKLMGVVVRMERPDLVISL--YQKMERKQIRC--DIYS 116

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           +NIL++       +    + F ++ +  L PD+ T+  ++        + E      +M 
Sbjct: 117 FNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMF 176

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
              C+P+++TF  L++   +     +   +   +M    +PT  T+ +++    K     
Sbjct: 177 ETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTV 236

Query: 209 KAEYVFQKMTAMKYT-PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            A  + +KM  + +  P+ + Y  II         S A+ +F E+ + G    + T N+M
Sbjct: 237 SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +  +C +G  ++A+ L +      ++PD  TY  L  A+ K        +L   M   GI
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGI 356

Query: 328 VPN 330
           +PN
Sbjct: 357 IPN 359



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 110/274 (40%), Gaps = 22/274 (8%)

Query: 13  IYSKLIAVMGKKGQTRL--AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           +++    + G  G  R+   M L  EM   G   +   YN LI       D    L  AL
Sbjct: 395 VFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGD----LNAAL 450

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL-----------AP 119
              Q+M     C P+IVT N LL        +     +FK + +S +            P
Sbjct: 451 DLSQQMISSGVC-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEP 509

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D+ TYN ++      G   E E +   M      PD IT++ +ID   K+   D+  Q+F
Sbjct: 510 DVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 569

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY- 238
            S+      P + TFN++I  Y KA        +F +M         I Y  I  +YG+ 
Sbjct: 570 VSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIY--ITLIYGFR 627

Query: 239 -CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
              N++ A +IF E+   G      T+  ML  +
Sbjct: 628 KVGNINGALDIFQEMISSGVYPDTITIRNMLTGF 661



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 5/176 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI  +  +G+   A  L+ EM + G  PD   Y+++I        K   L +A
Sbjct: 510 DVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLC----KQSRLDEA 565

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F  M G +   PN+VT+N L+    +A  VD    LF E+    +  D   Y  ++ 
Sbjct: 566 TQMFVSM-GSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIY 624

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            + K G I     +   M S+   PD IT   ++  +  ++  ++   + + L  S
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQMS 680


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 150/343 (43%), Gaps = 7/343 (2%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           Q ++    D   Y+ LI     +     AM L  EM + GC+PD   YN L+        
Sbjct: 7   QLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMC---- 62

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPD 120
           K   L +A+ +   M      +PN++T+NI+LR+ C+  R +D    L  E+     +P 
Sbjct: 63  KEGRLDEAIKFLNSMPSYGS-QPNVITHNIILRSMCSTGRWMD-AEKLLTEMVRKGCSPS 120

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + T+N +++   + G++     +L +M ++ C P+ +++N L+  + K +  D+  Q  +
Sbjct: 121 VVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLE 180

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            ++     P + T+N+M+    K      A  +  ++++   +P  ITY  +I       
Sbjct: 181 IMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVG 240

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
              +A E+  E+   G    V T ++++      G   EA   F +    GV P++ TY 
Sbjct: 241 KTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYN 300

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
            +     KA   +     L  M   G  P +  +   +E  ++
Sbjct: 301 SIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIAN 343



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 124/270 (45%), Gaps = 11/270 (4%)

Query: 80  ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
           + C P+++TY IL+ A      V Q   L  E+      PD+ TYN +++   K G + E
Sbjct: 10  KECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDE 69

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
               L+ M S   +P++IT N+++ S      +   E++   ++     P++ TFN +I 
Sbjct: 70  AIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILIN 129

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGK 257
              +  L G+A  + +KM     TP+ ++Y  +  ++G+C    + RA +  + +   G 
Sbjct: 130 FLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPL--LHGFCKEKKMDRAIQYLEIMVSRGC 187

Query: 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
              + T N ML A C +G    A  L     + G +P   TY  +    +K    +   +
Sbjct: 188 YPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVE 247

Query: 318 LLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
           LL  M   G+ P+       + T+SS +AG
Sbjct: 248 LLHEMRGKGLKPD-------VITYSSLIAG 270



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 5/243 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI  + +KG    A+ +  +M   GC P+   YN L    LH   K K + +A+ Y 
Sbjct: 124 FNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPL----LHGFCKEKKMDRAIQYL 179

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M     C P+IVTYN +L A  +   VD    L  +L     +P + TYN V+D   K
Sbjct: 180 EIMVS-RGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSK 238

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G   +   +L  M+    KPD+IT++ LI    +    ++  + F  +     KP   T
Sbjct: 239 VGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFT 298

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS++    KA+   +A      M +    P+ ++Y  +I           A E+ +EL 
Sbjct: 299 YNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELC 358

Query: 254 KLG 256
             G
Sbjct: 359 SRG 361



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 126/290 (43%), Gaps = 17/290 (5%)

Query: 21  MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME 80
           M   G+   A  L +EM   GC P    +N LI        +   L +A+   +KM    
Sbjct: 96  MCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLC----RKGLLGRAIDILEKMP-TH 150

Query: 81  RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140
            C PN ++YN LL    + + +D+     + +      PDI TYN ++ A  K+G +   
Sbjct: 151 GCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAA 210

Query: 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
             +L+++ S  C P +IT+N +ID   K    D+  ++   +     KP + T++S+I  
Sbjct: 211 VELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAG 270

Query: 201 YGKARLQGKAEYV---FQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFD-ELSK 254
             +   +GK E     F  +      P+  TY  I  M+G C      RA +     +SK
Sbjct: 271 LSR---EGKVEEAIKFFHDVEGFGVKPNAFTYNSI--MFGLCKAQQTDRAIDFLAYMISK 325

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
             K  +VS    ++E     GL  EA  L     + GV   SS  +++ +
Sbjct: 326 GCKPTEVS-YTILIEGIANEGLAKEALELLNELCSRGVVKKSSAEQVVVR 374



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 76/188 (40%)

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           VL R    +C PD+IT+ +LI++        +  ++   +     KP + T+N ++    
Sbjct: 3   VLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMC 62

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           K     +A      M +    P+ IT+  I+           A ++  E+ + G    V 
Sbjct: 63  KEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVV 122

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T N ++   C  GL   A  + E     G TP+S +Y  L   + K    +   + L+ M
Sbjct: 123 TFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIM 182

Query: 323 EQNGIVPN 330
              G  P+
Sbjct: 183 VSRGCYPD 190


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 144/326 (44%), Gaps = 13/326 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH--TRDKAKALAKAL 70
           +Y  ++    + G  R ++ +   M   GC  D    N ++ A       D+A  L + L
Sbjct: 148 MYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKL 207

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
            +F        C+ +IV+YN +L+    A+    V  L  E+     AP+I T+N ++  
Sbjct: 208 AFFG-------CEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             +NG+ + +  VL++M  + C PDI  +  +ID   K    +   ++   +     KP 
Sbjct: 261 LCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPN 320

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREI 248
           +  +N+++     A    +AE +  +M         +T+  ++    +C N  V R  E+
Sbjct: 321 VVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDF--FCQNGLVDRVIEL 378

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            +++   G    V T   ++  +C  GL  EA +L ++  + G  P++ +Y ++ K    
Sbjct: 379 LEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCS 438

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
           A      ++L+ +M Q G  PN   F
Sbjct: 439 AGRWVDAEELMSQMIQQGCPPNPVTF 464



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 152/365 (41%), Gaps = 50/365 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DTG  + ++  + ++G    A+ L  ++   GC  D   YNA++        K   +AK 
Sbjct: 180 DTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVL--------KGLCMAKR 231

Query: 70  LGYFQK-MKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            G  ++ M  M R  C PNIVT+N L+    +    ++V+ +  ++ E    PDI  Y  
Sbjct: 232 WGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYAT 291

Query: 127 VMDAYGKNGMI-----------------------------------KEMESVLSRMKSNQ 151
           ++D   K G +                                   KE E +LS M    
Sbjct: 292 IIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKD 351

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
           C  D +TFN+L+D + +    D++ ++ + ++     P + T+ ++I  + K  L  +A 
Sbjct: 352 CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAV 411

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLE 269
            + + M++    P+ ++Y   I + G C       A E+  ++ + G      T N ++ 
Sbjct: 412 MLLKSMSSCGCKPNTVSYT--IVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLIN 469

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             C  GL  +A  L +     G +PD  +Y  +     KA   E   +LL  M   GI P
Sbjct: 470 FLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP 529

Query: 330 NKRFF 334
           N   +
Sbjct: 530 NTIIY 534



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 146/335 (43%), Gaps = 7/335 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ +I  + K+G   +A  + + M + G +P+   YN ++   L + ++ K   + 
Sbjct: 285 DIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKG-LCSAERWKEAEEL 343

Query: 70  LG-YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           L   FQK      C  + VT+NIL+    Q   VD+V  L +++      PD+ TY  V+
Sbjct: 344 LSEMFQK-----DCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVI 398

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + + K G+I E   +L  M S  CKP+ +++ +++        +   E++   ++     
Sbjct: 399 NGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCP 458

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   TFN++I    K  L  +A  + ++M     +P  I+Y  +I   G       A E+
Sbjct: 459 PNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALEL 518

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            + +   G        +++  A    G   +   +F+N  +  +  D+  Y  +  +  K
Sbjct: 519 LNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCK 578

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
               +        M  NG +PN+  +   ++  +S
Sbjct: 579 RWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLAS 613



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 125/300 (41%), Gaps = 9/300 (3%)

Query: 46  PSVYNAL-ITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQ 104
           P+ Y    +   L TR +   +A AL    +M   + C P    Y+++L A  ++     
Sbjct: 109 PNAYTFFPVVRGLCTRGR---IADALEVLDEMS-FKGCAPIPPMYHVILEAACRSGGFRN 164

Query: 105 VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164
              + + +H      D    N V++A  + G + E   +L ++    C+ DI+++N ++ 
Sbjct: 165 SVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLK 224

Query: 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 224
                + +  +E++   ++     P + TFN++I    +  L  +   V  +M+    TP
Sbjct: 225 GLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTP 284

Query: 225 SFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
               Y  II   G C   ++  A EI + +   G    V   N +L+  C      EA+ 
Sbjct: 285 DIRMYATIID--GICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEE 342

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           L           D  T+ +L   + +  + + V +LL++M  +G +P+   +   +  F 
Sbjct: 343 LLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFC 402



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 94/230 (40%), Gaps = 4/230 (1%)

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           + P+ YT+  V+      G I +   VL  M    C P    +++++++  +   F    
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 177 QVFKSLMHSKEKPTLPTFN-SMIIN-YGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
           +V ++ MH+K   TL T N ++++N   +     +A  + +K+         ++Y  ++ 
Sbjct: 167 RVLEA-MHAK-GCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLK 224

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
                       E+ DE+ ++     + T N ++   C NGL      +       G TP
Sbjct: 225 GLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTP 284

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           D   Y  +     K    E+  ++L RM   G+ PN   +   L+   S+
Sbjct: 285 DIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSA 334


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 144/326 (44%), Gaps = 13/326 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH--TRDKAKALAKAL 70
           +Y  ++    + G  R ++ +   M   GC  D    N ++ A       D+A  L + L
Sbjct: 148 MYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKL 207

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
            +F        C+ +IV+YN +L+    A+    V  L  E+     AP+I T+N ++  
Sbjct: 208 AFFG-------CEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             +NG+ + +  VL++M  + C PDI  +  +ID   K    +   ++   +     KP 
Sbjct: 261 LCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPN 320

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREI 248
           +  +N+++     A    +AE +  +M         +T+  ++    +C N  V R  E+
Sbjct: 321 VVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDF--FCQNGLVDRVIEL 378

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            +++   G    V T   ++  +C  GL  EA +L ++  + G  P++ +Y ++ K    
Sbjct: 379 LEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCS 438

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
           A      ++L+ +M Q G  PN   F
Sbjct: 439 AGRWVDAEELMSQMIQQGCPPNPVTF 464



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 152/365 (41%), Gaps = 50/365 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DTG  + ++  + ++G    A+ L  ++   GC  D   YNA++        K   +AK 
Sbjct: 180 DTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVL--------KGLCMAKR 231

Query: 70  LGYFQK-MKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            G  ++ M  M R  C PNIVT+N L+    +    ++V+ +  ++ E    PDI  Y  
Sbjct: 232 WGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYAT 291

Query: 127 VMDAYGKNGMI-----------------------------------KEMESVLSRMKSNQ 151
           ++D   K G +                                   KE E +LS M    
Sbjct: 292 IIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKD 351

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
           C  D +TFN+L+D + +    D++ ++ + ++     P + T+ ++I  + K  L  +A 
Sbjct: 352 CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAV 411

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLE 269
            + + M++    P+ ++Y   I + G C       A E+  ++ + G      T N ++ 
Sbjct: 412 MLLKSMSSCGCKPNTVSYT--IVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLIN 469

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             C  GL  +A  L +     G +PD  +Y  +     KA   E   +LL  M   GI P
Sbjct: 470 FLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP 529

Query: 330 NKRFF 334
           N   +
Sbjct: 530 NTIIY 534



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 146/335 (43%), Gaps = 7/335 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ +I  + K+G   +A  + + M + G +P+   YN ++   L + ++ K   + 
Sbjct: 285 DIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKG-LCSAERWKEAEEL 343

Query: 70  LG-YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           L   FQK      C  + VT+NIL+    Q   VD+V  L +++      PD+ TY  V+
Sbjct: 344 LSEMFQK-----DCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVI 398

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + + K G+I E   +L  M S  CKP+ +++ +++        +   E++   ++     
Sbjct: 399 NGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCP 458

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   TFN++I    K  L  +A  + ++M     +P  I+Y  +I   G       A E+
Sbjct: 459 PNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALEL 518

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            + +   G        +++  A    G   +   +F+N  +  +  D+  Y  +  +  K
Sbjct: 519 LNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCK 578

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
               +        M  NG +PN+  +   ++  +S
Sbjct: 579 RWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLAS 613



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 125/300 (41%), Gaps = 9/300 (3%)

Query: 46  PSVYNAL-ITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQ 104
           P+ Y    +   L TR +   +A AL    +M   + C P    Y+++L A  ++     
Sbjct: 109 PNAYTFFPVVRGLCTRGR---IADALEVLDEMS-FKGCAPIPPMYHVILEAACRSGGFRN 164

Query: 105 VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164
              + + +H      D    N V++A  + G + E   +L ++    C+ DI+++N ++ 
Sbjct: 165 SVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLK 224

Query: 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 224
                + +  +E++   ++     P + TFN++I    +  L  +   V  +M+    TP
Sbjct: 225 GLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTP 284

Query: 225 SFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
               Y  II   G C   ++  A EI + +   G    V   N +L+  C      EA+ 
Sbjct: 285 DIRMYATIID--GICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEE 342

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           L           D  T+ +L   + +  + + V +LL++M  +G +P+   +   +  F 
Sbjct: 343 LLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFC 402



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 94/230 (40%), Gaps = 4/230 (1%)

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           + P+ YT+  V+      G I +   VL  M    C P    +++++++  +   F    
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 177 QVFKSLMHSKEKPTLPTFN-SMIIN-YGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
           +V ++ MH+K   TL T N ++++N   +     +A  + +K+         ++Y  ++ 
Sbjct: 167 RVLEA-MHAK-GCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLK 224

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
                       E+ DE+ ++     + T N ++   C NGL      +       G TP
Sbjct: 225 GLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTP 284

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           D   Y  +     K    E+  ++L RM   G+ PN   +   L+   S+
Sbjct: 285 DIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSA 334


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 144/326 (44%), Gaps = 13/326 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH--TRDKAKALAKAL 70
           +Y  ++    + G  R ++ +   M   GC  D    N ++ A       D+A  L + L
Sbjct: 148 MYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKL 207

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
            +F        C+ +IV+YN +L+    A+    V  L  E+     AP+I T+N ++  
Sbjct: 208 AFFG-------CEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             +NG+ + +  VL++M  + C PDI  +  +ID   K    +   ++   +     KP 
Sbjct: 261 LCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPN 320

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREI 248
           +  +N+++     A    +AE +  +M         +T+  ++    +C N  V R  E+
Sbjct: 321 VVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDF--FCQNGLVDRVIEL 378

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            +++   G    V T   ++  +C  GL  EA +L ++  + G  P++ +Y ++ K    
Sbjct: 379 LEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCS 438

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
           A      ++L+ +M Q G  PN   F
Sbjct: 439 AGRWVDAEELMSQMIQQGCPPNPVTF 464



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 152/365 (41%), Gaps = 50/365 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DTG  + ++  + ++G    A+ L  ++   GC  D   YNA++        K   +AK 
Sbjct: 180 DTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVL--------KGLCMAKR 231

Query: 70  LGYFQK-MKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            G  ++ M  M R  C PNIVT+N L+    +    ++V+ +  ++ E    PDI  Y  
Sbjct: 232 WGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYAT 291

Query: 127 VMDAYGKNGMI-----------------------------------KEMESVLSRMKSNQ 151
           ++D   K G +                                   KE E +LS M    
Sbjct: 292 IIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKD 351

Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
           C  D +TFN+L+D + +    D++ ++ + ++     P + T+ ++I  + K  L  +A 
Sbjct: 352 CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAV 411

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLE 269
            + + M++    P+ ++Y   I + G C       A E+  ++ + G      T N ++ 
Sbjct: 412 MLLKSMSSCGCKPNTVSYT--IVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLIN 469

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             C  GL  +A  L +     G +PD  +Y  +     KA   E   +LL  M   GI P
Sbjct: 470 FLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP 529

Query: 330 NKRFF 334
           N   +
Sbjct: 530 NTIIY 534



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 146/335 (43%), Gaps = 7/335 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ +I  + K+G   +A  + + M + G +P+   YN ++   L + ++ K   + 
Sbjct: 285 DIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKG-LCSAERWKEAEEL 343

Query: 70  LG-YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           L   FQK      C  + VT+NIL+    Q   VD+V  L +++      PD+ TY  V+
Sbjct: 344 LSEMFQK-----DCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVI 398

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + + K G+I E   +L  M S  CKP+ +++ +++        +   E++   ++     
Sbjct: 399 NGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCP 458

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   TFN++I    K  L  +A  + ++M     +P  I+Y  +I   G       A E+
Sbjct: 459 PNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALEL 518

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            + +   G        +++  A    G   +   +F+N  +  +  D+  Y  +  +  K
Sbjct: 519 LNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCK 578

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
               +        M  NG +PN+  +   ++  +S
Sbjct: 579 RWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLAS 613



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 125/300 (41%), Gaps = 9/300 (3%)

Query: 46  PSVYNAL-ITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQ 104
           P+ Y    +   L TR +   +A AL    +M   + C P    Y+++L A  ++     
Sbjct: 109 PNAYTFFPVVRGLCTRGR---IADALEVLDEMS-FKGCAPIPPMYHVILEAACRSGGFRN 164

Query: 105 VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164
              + + +H      D    N V++A  + G + E   +L ++    C+ DI+++N ++ 
Sbjct: 165 SVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLK 224

Query: 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 224
                + +  +E++   ++     P + TFN++I    +  L  +   V  +M+    TP
Sbjct: 225 GLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTP 284

Query: 225 SFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
               Y  II   G C   ++  A EI + +   G    V   N +L+  C      EA+ 
Sbjct: 285 DIRMYATIID--GICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEE 342

Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           L           D  T+ +L   + +  + + V +LL++M  +G +P+   +   +  F 
Sbjct: 343 LLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFC 402



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 92/231 (39%), Gaps = 6/231 (2%)

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           + P+ YT+  V+      G I +   VL  M    C P    +++++++  +   F    
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQG---KAEYVFQKMTAMKYTPSFITYECII 233
           +V ++ MH+K   TL T N  ++       QG   +A  + +K+         ++Y  ++
Sbjct: 167 RVLEA-MHAK-GCTLDTGNCNLVLNAICE-QGCVDEAVGLLRKLAFFGCEADIVSYNAVL 223

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
                        E+ DE+ ++     + T N ++   C NGL      +       G T
Sbjct: 224 KGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCT 283

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           PD   Y  +     K    E+  ++L RM   G+ PN   +   L+   S+
Sbjct: 284 PDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSA 334


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 155/369 (42%), Gaps = 39/369 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+  I   GK G   +A   F E++  G +PD   Y ++I        KA  L +A
Sbjct: 114 DIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLC----KAGRLGEA 169

Query: 70  LGYFQKMKG-----------------------------MER-----CKPNIVTYNILLRA 95
              F +M+                              +ER     C P++V++N +L  
Sbjct: 170 EELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTC 229

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
             + R VD+  +LF E+ +    P+  TYN ++D     G ++E   +L  M+     P+
Sbjct: 230 LGKKRKVDEALSLF-EVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPN 288

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
           ++T N+++D   K +  ++  ++F+S       P   T+ S+I   GK     +A  +F+
Sbjct: 289 LLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFE 348

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
           KM    +  + + Y  +I  +          ++F EL + G    ++ LN  ++     G
Sbjct: 349 KMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAG 408

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335
              +  ++FE+  + G  PD  +Y +L    TKA        +   M+Q G   + R + 
Sbjct: 409 EVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYN 468

Query: 336 EALETFSSS 344
             ++ F  S
Sbjct: 469 AVVDGFCKS 477



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 147/327 (44%), Gaps = 12/327 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y     +++ L+  + ++GQ   A+ L  E++ S   PD  +YN  I        KA  +
Sbjct: 76  YEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCF----GKAGNV 131

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             A  +F ++K  +  KP+ V+Y  ++    +A  + +   LF ++      P  Y YN 
Sbjct: 132 DMACKFFHELKA-QGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNT 190

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  YG  G  ++   +L R++   C P +++FN ++   GK++  D+   +F+ +M   
Sbjct: 191 MIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFE-VMKKD 249

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT---PSFITYECIITMYGYCDNVS 243
            +P   T+N +I       L G+ E  ++ +  M++    P+ +T   ++        + 
Sbjct: 250 AEPNSSTYNIII---DMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLE 306

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A +IF+  S+ G +    T  ++++     G   EA  LFE   + G   +   Y  L 
Sbjct: 307 EAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLI 366

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
           + +     KE   K+ K + + G  P+
Sbjct: 367 RNFFIHGRKEDGHKVFKELIRRGCKPD 393



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/372 (20%), Positives = 151/372 (40%), Gaps = 32/372 (8%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI-TAHLHTRD- 61
           QR    D   Y  LI  +GKKGQ   A  LF +M ++G   +P VY +LI    +H R  
Sbjct: 317 QRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKE 376

Query: 62  -----------------------------KAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
                                        KA  + K    F+ ++      P++ +Y+IL
Sbjct: 377 DGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFL-PDVRSYSIL 435

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +A    + + +F  + +   A D   YN V+D + K+G + +   +L  MK    
Sbjct: 436 IHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCV 495

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           +P + T+  ++D   K    D+   +F+       +  +  ++S+I  +GK     +A  
Sbjct: 496 QPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYL 555

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           + ++M     TP+  T+  ++      + ++ A   F  + ++       T + ++   C
Sbjct: 556 ILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLC 615

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
                 +A + +++    G+ P+  TY  +     K         L +R + NG +P+  
Sbjct: 616 RVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAA 675

Query: 333 FFLEALETFSSS 344
            F   +E  S++
Sbjct: 676 SFNALIEGMSNA 687



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 1/248 (0%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P    Y +L+ A A+AR  ++   L +++ E      ++ +  ++ A  + G + +  +
Sbjct: 42  RPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALA 101

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           ++  +K +  +PDI+ +N+ ID +GK    D   + F  L     KP   ++ SMI    
Sbjct: 102 LVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLC 161

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           KA   G+AE +F +M A +  P    Y  +I  YG       A ++ + L + G    V 
Sbjct: 162 KAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVV 221

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           + N++L          EA  LFE        P+SSTY ++          E   ++L  M
Sbjct: 222 SFNSILTCLGKKRKVDEALSLFE-VMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEM 280

Query: 323 EQNGIVPN 330
           E   + PN
Sbjct: 281 EHASLFPN 288



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/364 (21%), Positives = 142/364 (39%), Gaps = 41/364 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I   G  G+   A  L   +R  GC P    +N+++T       K + + +AL  F
Sbjct: 188 YNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTC----LGKKRKVDEALSLF 243

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + MK  +  +PN  TYNI++        V++   +  E+  + L P++ T N ++D   K
Sbjct: 244 EVMK--KDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCK 301

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-------QAFDKM----------- 175
              ++E   +        C PD +T+  LID  GK+       + F+KM           
Sbjct: 302 ARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVV 361

Query: 176 -----------------EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
                             +VFK L+    KP L   N+ +    KA    K   +F+ + 
Sbjct: 362 YTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIR 421

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           +  + P   +Y  +I              IF  + + G  +     NA+++ +C +G   
Sbjct: 422 SYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVH 481

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           +A  + E      V P  +TY  +     K +  +    L +  +  GI  N   +   +
Sbjct: 482 KAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLI 541

Query: 339 ETFS 342
           + F 
Sbjct: 542 DGFG 545



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 124/288 (43%), Gaps = 5/288 (1%)

Query: 23  KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82
           K G+      +F ++R+ G  PD   Y+ LI    H   KA    +    F  MK  +  
Sbjct: 406 KAGEVEKGRMIFEDIRSYGFLPDVRSYSILI----HGLTKAGQARETSNIFHAMK-QQGF 460

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
             +   YN ++    ++  V +   + +E+ E  + P + TY  ++D   K   + E   
Sbjct: 461 ALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYM 520

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +    KS   + +++ ++ LID +GK    D+   + + +M     P + T+NS++    
Sbjct: 521 LFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALV 580

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           KA    +A   FQ M  MK  P+  TY  +I         ++A   + ++ K G    V 
Sbjct: 581 KAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVV 640

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           T   M+      G  T+A  LFE     G  PD++++  L +  + AN
Sbjct: 641 TYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNAN 688



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/321 (19%), Positives = 133/321 (41%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           ++  Y+ +I ++   G+   A  +  EM ++   P+    N ++        KA+ L +A
Sbjct: 253 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLC----KARKLEEA 308

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F+       C P+ VTY  L+    +   VD+   LF+++ ++    +   Y  ++ 
Sbjct: 309 YKIFES-ASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIR 367

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +  +G  ++   V   +    CKPD+   N  +D   K    +K   +F+ +      P
Sbjct: 368 NFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLP 427

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + +++ +I    KA    +   +F  M    +      Y  ++  +     V +A EI 
Sbjct: 428 DVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEIL 487

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +E+ +      V+T  A+++         EA +LFE + + G+  +   Y  L   + K 
Sbjct: 488 EEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKV 547

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +    +L+ M + G+ PN
Sbjct: 548 GRIDEAYLILEEMMKKGLTPN 568



 Score = 42.4 bits (98), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/128 (20%), Positives = 51/128 (39%)

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           +AR    A      M  +K+ P+F  Y  +I          RA E+  ++ ++G ++ V 
Sbjct: 22  RARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVH 81

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
               ++ A    G   +A  L +      + PD   Y +    + KA   ++  K    +
Sbjct: 82  LFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHEL 141

Query: 323 EQNGIVPN 330
           +  G+ P+
Sbjct: 142 KAQGLKPD 149


>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
          Length = 332

 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 149/322 (46%), Gaps = 13/322 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ L+  +  +G+   A+ L   M   G +P  ++ N L         K      A
Sbjct: 9   DVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGTIINGLC--------KMGDTESA 60

Query: 70  LGYFQKMKGMERCKPNIVTYN-ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           L    KM+     K ++V YN I+ R C    ++   N LF E+H+  + PD+ TY+G++
Sbjct: 61  LNLLSKMEE-THIKAHVVIYNAIIDRLCKDGHHIHAQN-LFTEMHDKGIFPDVITYSGMI 118

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D++ ++G   + E +L  M   Q  PD++TF+ LI++  K     + E+++  ++     
Sbjct: 119 DSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIF 178

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           PT  T+NSMI  + K      A+ +   M +   +P  +T+  +I  Y     V    EI
Sbjct: 179 PTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEI 238

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK-LLYKAYT 307
           F E+ + G      T   ++  +C  G    A  L     + GV P+  T++ +L    +
Sbjct: 239 FCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCS 298

Query: 308 KANMKELVQKLLKRMEQNGIVP 329
           K  +++    +L+ ++++ + P
Sbjct: 299 KKELRKAF-AILEDLQKSEVCP 319



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 115/261 (44%), Gaps = 6/261 (2%)

Query: 82  CKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140
           C+P++VT+  L+   C + R V Q  AL   + E    P    Y  +++   K G  +  
Sbjct: 6   CRPDVVTFTTLMNGLCCEGR-VLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESA 60

Query: 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
            ++LS+M+    K  ++ +N +ID   K       + +F  +      P + T++ MI +
Sbjct: 61  LNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDS 120

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
           + ++     AE + + M   +  P  +T+  +I        VS A EI+ ++ + G    
Sbjct: 121 FCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPT 180

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
             T N+M++ +C      +A  + ++  +   +PD  T+  L   Y KA   +   ++  
Sbjct: 181 TITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFC 240

Query: 321 RMEQNGIVPNKRFFLEALETF 341
            M + GIV N   +   +  F
Sbjct: 241 EMHRRGIVANTVTYTTLIHGF 261



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 5/188 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R    D   +S LI  + K+G+   A  ++ +M   G  P    YN++I        K 
Sbjct: 139 ERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFC----KQ 194

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L  A      M   + C P++VT++ L+    +A+ VD    +F E+H   +  +  T
Sbjct: 195 DRLNDAKRMLDSMAS-KSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVT 253

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++  + + G +   + +L+ M S+   P+ ITF  ++ S   ++   K   + + L 
Sbjct: 254 YTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQ 313

Query: 184 HSKEKPTL 191
            S+  P +
Sbjct: 314 KSEVCPRI 321



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/249 (18%), Positives = 92/249 (36%), Gaps = 30/249 (12%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT--------- 59
           A   IY+ +I  + K G    A  LF+EM + G  PD   Y+ +I +   +         
Sbjct: 74  AHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQL 133

Query: 60  -RDKAK-----------ALAKALGYFQKMKGMERCK---------PNIVTYNILLRACAQ 98
            RD  +           AL  AL    K+   E            P  +TYN ++    +
Sbjct: 134 LRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCK 193

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
              ++    +   +     +PD+ T++ +++ Y K   +     +   M       + +T
Sbjct: 194 QDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVT 253

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +  LI  + +    D  + +   ++ S   P   TF SM+ +    +   KA  + + + 
Sbjct: 254 YTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQ 313

Query: 219 AMKYTPSFI 227
             +  P  +
Sbjct: 314 KSEVCPRIV 322



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 76/195 (38%), Gaps = 4/195 (2%)

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           M    C+PD++TF  L++         +   +   ++    +P    + ++I    K   
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
              A  +  KM         + Y  II       +   A+ +F E+   G    V T + 
Sbjct: 57  TESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSG 116

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           M++++C +G  T+A+ L  +     + PD  T+  L  A  K       +++   M + G
Sbjct: 117 MIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRG 176

Query: 327 IVPNKRFFLEALETF 341
           I P    +   ++ F
Sbjct: 177 IFPTTITYNSMIDGF 191


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 146/325 (44%), Gaps = 5/325 (1%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           L A +  K     A  +F EM  S   P+   YN LI         A  L  AL +F +M
Sbjct: 176 LDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFC----LAGNLDVALRFFDRM 231

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +  + C PN+VTYN L+    + R +D    L + +    L P++ +YN V++   + G 
Sbjct: 232 EK-KGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGR 290

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           +KE+  VL+ M       D +T+N LI  Y K   F +   +   ++     P++ T+ S
Sbjct: 291 MKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTS 350

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           +I +  KA    +A     +M      P+  TY  ++  +     ++ A  +  E+   G
Sbjct: 351 LIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNG 410

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
               V T NA++  +C+ G   +A  + E+    G+TPD  +Y  +   + ++   +   
Sbjct: 411 FSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEAL 470

Query: 317 KLLKRMEQNGIVPNKRFFLEALETF 341
           ++ ++M   GI P+   +   ++ F
Sbjct: 471 RVKRKMVAKGIKPDTITYSSLIQGF 495



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/413 (19%), Positives = 175/413 (42%), Gaps = 55/413 (13%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R Y  D   Y+ LI    K+G    A+ + +EM   G  P    Y +LI    H+  KA
Sbjct: 303 KRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLI----HSMCKA 358

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             + +A  +  +M+    C PN  TY  L+   +Q   +++   + KE+ ++  +P + T
Sbjct: 359 GNMNRATEFLDQMRVRGLC-PNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVT 417

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN +++ +   G + +  +VL  MK     PD+++++ ++  + +    D+  +V + ++
Sbjct: 418 YNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMV 477

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
               KP   T++S+I  + + R   +A  +F +M  +   P   TY  +I  Y    ++ 
Sbjct: 478 AKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQ 537

Query: 244 RAREIFDELSKLG----------------------------------------------- 256
           +A ++ +E+ + G                                               
Sbjct: 538 KAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLI 597

Query: 257 ---KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
               +++  ++ ++++ +CM G+ TEAD +FE+       PD + Y ++   + +     
Sbjct: 598 ENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIR 657

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRSLSTAKS 366
               L K M ++G + +    +  ++T       ++  S   ++ RS   +++
Sbjct: 658 KAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANVLRSCELSEA 710



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 160/357 (44%), Gaps = 50/357 (14%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALG 71
           Y+ LI      G   +A+  F  M   GC P+   YN LI  +   R  D    L +++ 
Sbjct: 208 YNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMA 267

Query: 72  YFQKMKGMERCKPNIVTYNILLRA-CAQAR----------------NVDQV--NALFK-- 110
               +KG+E   PN+++YN+++   C + R                ++D+V  N L K  
Sbjct: 268 ----LKGLE---PNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGY 320

Query: 111 ----ELHESI----------LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
                 H+++          L+P + TY  ++ +  K G +      L +M+     P+ 
Sbjct: 321 CKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNE 380

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
            T+  L+D + ++   ++  +V K ++ +   P++ T+N++I  +  A     A  V + 
Sbjct: 381 RTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLED 440

Query: 217 MTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           M     TP  ++Y  +++  G+C   +V  A  +  ++   G      T +++++ +C  
Sbjct: 441 MKEKGLTPDVVSYSTVLS--GFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQ 498

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT-KANMKELVQKLLKRMEQNGIVPN 330
               EA  LF+    +G+ PD  TY  L  AY  + ++++ +Q L   M + G++P+
Sbjct: 499 RRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQ-LHNEMVEKGVLPD 554



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 117/265 (44%), Gaps = 7/265 (2%)

Query: 82  CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-IKEM 140
           C      +++++++ ++   +D+  ++          P + +YN V+DA  ++   I   
Sbjct: 130 CNSTSSVFDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFA 189

Query: 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
           E+V   M  +Q  P++ T+N+LI  +      D   + F  +      P + T+N++I  
Sbjct: 190 ENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDG 249

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI---FDELSKLGK 257
           Y K R       + + M      P+ I+Y  +I   G C    R +EI     E++K G 
Sbjct: 250 YCKLRKIDDGFELLRSMALKGLEPNLISYNVVIN--GLCRE-GRMKEISFVLTEMNKRGY 306

Query: 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
            +   T N +++ YC  G   +A ++       G++P   TY  L  +  KA       +
Sbjct: 307 SLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATE 366

Query: 318 LLKRMEQNGIVPNKRFFLEALETFS 342
            L +M   G+ PN+R +   ++ FS
Sbjct: 367 FLDQMRVRGLCPNERTYTTLVDGFS 391


>gi|255661200|gb|ACU25769.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 426

 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 134/290 (46%), Gaps = 5/290 (1%)

Query: 38  RNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACA 97
           R     PD   Y+ LIT       K      AL + QKM+  +R   ++V Y+ L+    
Sbjct: 1   RGRALSPDKYTYSTLITYF----GKEGLFDDALSWLQKME-QDRVPGDLVLYSNLIELSR 55

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           +  +  +  ++F  L  S + PD+  YN +++ +GK  + +E  S++S M+     PD +
Sbjct: 56  KLCDFSKAISIFSRLKRSGITPDLVAYNSMINVFGKAKLFREARSLISEMRMAGIMPDTV 115

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           +++ L+  Y + Q F +   VF  +   K    L T N MI  YG+  +  +A+ +F  M
Sbjct: 116 SYSTLLTMYVENQKFLEALSVFAEMREIKCLLNLITCNVMIDVYGQLDMAKEADKLFWGM 175

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
                 P+ ++Y  ++ +YG  +    A  +F  + +   +  V T N M+  Y      
Sbjct: 176 RKXGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEH 235

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
            +A+ L +  HN G+ PD+ TY  +   + K    +    L +++  +G+
Sbjct: 236 EKANNLIQEMHNRGIEPDAITYSTIISIWGKVGKLDRAAMLFQKLRSSGV 285



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 151/320 (47%), Gaps = 5/320 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI   GK+G    A+    +M       D  +Y+ LI       D     +KA
Sbjct: 8   DKYTYSTLITYFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCD----FSKA 63

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +  F ++K      P++V YN ++    +A+   +  +L  E+  + + PD  +Y+ ++ 
Sbjct: 64  ISIFSRLK-RSGITPDLVAYNSMINVFGKAKLFREARSLISEMRMAGIMPDTVSYSTLLT 122

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y +N    E  SV + M+  +C  ++IT N++ID YG+     + +++F  +     +P
Sbjct: 123 MYVENQKFLEALSVFAEMREIKCLLNLITCNVMIDVYGQLDMAKEADKLFWGMRKXGIEP 182

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG      +A  + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLI 242

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+   G +    T + ++  +   G    A +LF+   + GV  D   Y+ +  AY +A
Sbjct: 243 QEMHNRGIEPDAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILYQTMIVAYERA 302

Query: 310 NMKELVQKLLKRMEQNGIVP 329
            +    ++LL  +++   +P
Sbjct: 303 GLVAHAKRLLHELKRPDNIP 322



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 104/214 (48%)

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           L+PD YTY+ ++  +GK G+  +  S L +M+ ++   D++ ++ LI+   K   F K  
Sbjct: 5   LSPDKYTYSTLITYFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDFSKAI 64

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
            +F  L  S   P L  +NSMI  +GKA+L  +A  +  +M      P  ++Y  ++TMY
Sbjct: 65  SIFSRLKRSGITPDLVAYNSMINVFGKAKLFREARSLISEMRMAGIMPDTVSYSTLLTMY 124

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                   A  +F E+ ++   + + T N M++ Y    +  EAD LF      G+ P+ 
Sbjct: 125 VENQKFLEALSVFAEMREIKCLLNLITCNVMIDVYGQLDMAKEADKLFWGMRKXGIEPNV 184

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +Y  L + Y  A +      L + M++  I  N
Sbjct: 185 VSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 218



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 142/351 (40%), Gaps = 42/351 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I V GK    R A  L SEMR +G  PD   Y+ L+T ++      +   +A
Sbjct: 78  DLVAYNSMINVFGKAKLFREARSLISEMRMAGIMPDTVSYSTLLTMYVEN----QKFLEA 133

Query: 70  LGYFQKMK--------------------------------GMER--CKPNIVTYNILLRA 95
           L  F +M+                                GM +   +PN+V+YN LLR 
Sbjct: 134 LSVFAEMREIKCLLNLITCNVMIDVYGQLDMAKEADKLFWGMRKXGIEPNVVSYNTLLRV 193

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
              A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M +   +PD
Sbjct: 194 YGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNRGIEPD 253

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
            IT++ +I  +GK    D+   +F+ L  S  +     + +MI+ Y +A L   A+ +  
Sbjct: 254 AITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILYQTMIVAYERAGLVAHAKRLLH 313

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
           ++      P  I  +  I +      +  A  +F +    G+   ++    M+  +    
Sbjct: 314 ELK----RPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMINLFSKYK 369

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
             +    +FE    +G  PDS+   L+  AY K    E        M+  G
Sbjct: 370 KYSNVVEVFEKMRGLGYFPDSNVIALVLNAYGKLREFEKANDAYTEMQDEG 420



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 111/247 (44%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+  TY+ L+    +    D   +  +++ +  +  D+  Y+ +++   K     +  S+
Sbjct: 7   PDKYTYSTLITYFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDFSKAISI 66

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
            SR+K +   PD++ +N +I+ +GK + F +   +   +  +   P   ++++++  Y +
Sbjct: 67  FSRLKRSGITPDLVAYNSMINVFGKAKLFREARSLISEMRMAGIMPDTVSYSTLLTMYVE 126

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
            +   +A  VF +M  +K   + IT   +I +YG  D    A ++F  + K G +  V +
Sbjct: 127 NQKFLEALSVFAEMREIKCLLNLITCNVMIDVYGQLDMAKEADKLFWGMRKXGIEPNVVS 186

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N +L  Y    L  EA  LF       +  +  TY  +   Y K    E    L++ M 
Sbjct: 187 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMH 246

Query: 324 QNGIVPN 330
             GI P+
Sbjct: 247 NRGIEPD 253


>gi|255661194|gb|ACU25766.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 426

 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 136/297 (45%), Gaps = 5/297 (1%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  +YS LI +  K      A+ +FS ++ SG  PD   YN++I        KAK   +
Sbjct: 42  GDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFAPDLVAYNSMINVFX----KAKLFRE 97

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A     +M+      P+ V+Y  LL    + +   +  ++F E+ E     D+ T N ++
Sbjct: 98  ARSLINEMR-TAGVMPDTVSYTTLLTMHVENKRFLEALSVFAEMREIKCLLDLTTCNIMI 156

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D YG+ GM KE + +   M+    +P+++++N L+  YG  + F +   +F+ +     +
Sbjct: 157 DVYGQLGMAKEADKLFWGMRKIGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIE 216

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + T+NSM++ YGK     KA  + Q+M      P+ ITY  II+++     + RA  +
Sbjct: 217 QNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWVKVGKLDRAAML 276

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           F +L   G ++       M+ AY   GL   A  L          P  +   +L  A
Sbjct: 277 FQKLRNSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAAA 333



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 153/327 (46%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +  +L  E+  + + PD  
Sbjct: 61  SKAIS----IFSRLK-RSGFAPDLVAYNSMINVFXKAKLFREARSLINEMRTAGVMPDTV 115

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y  ++  + +N    E  SV + M+  +C  D+ T N++ID YG+     + +++F  +
Sbjct: 116 SYTTLLTMHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 175

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG     
Sbjct: 176 RKIGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 235

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   N GV  D   Y+ +
Sbjct: 236 EKANNLIQEMQNRGIEPNSITYSTIISIWVKVGKLDRAAMLFQKLRNSGVEIDQVLYQTM 295

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  +++   +P
Sbjct: 296 IVAYERAGLVAHAKRLLHELKRPDNIP 322



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 106/217 (48%)

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
           E  L+PD YTY+ ++  +GK G+     S L +M+ ++   D++ ++ LI+   K   + 
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           K   +F  L  S   P L  +NSMI  + KA+L  +A  +  +M      P  ++Y  ++
Sbjct: 62  KAISIFSRLKRSGFAPDLVAYNSMINVFXKAKLFREARSLINEMRTAGVMPDTVSYTTLL 121

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
           TM+        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF     +G+ 
Sbjct: 122 TMHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIE 181

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 218



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 77/360 (21%), Positives = 145/360 (40%), Gaps = 42/360 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V  K    R A  L +EMR +G  PD   Y  L+T H+     
Sbjct: 71  KRSGFAPDLVAYNSMINVFXKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMHVEN--- 127

Query: 63  AKALAKALGYFQKMK--------------------------------GMERC--KPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 128 -KRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVVS 186

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 187 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           +   +P+ IT++ +I  + K    D+   +F+ L +S  +     + +MI+ Y +A L  
Sbjct: 247 NRGIEPNSITYSTIISIWVKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYERAGLVA 306

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++      P  I  +  I +      +  A  +F +    G+   ++    ++
Sbjct: 307 HAKRLLHELK----RPDNIPRDTAIHILAAAGRLEEATWVFRQAIDAGEVKDITVFERLI 362

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             +      +    +F+        PDS+   L+  AY K +  E    +   M+  G +
Sbjct: 363 HLFSKYKKYSNVVEVFDKMRERRYFPDSNVIALVLNAYGKLHEFEKANSVYMEMQDEGCI 422


>gi|449447783|ref|XP_004141647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g73710-like [Cucumis sativus]
          Length = 1020

 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 164/370 (44%), Gaps = 46/370 (12%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T  Y+ LI + GK G+ + A  +F EM  +G   D   +N +I    +T      LA+A 
Sbjct: 321 TSTYNTLIDLYGKAGRLKDAANVFGEMLTTGISMDTITFNTMI----YTCGSHGHLAEAE 376

Query: 71  GYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               KM+  ER   P+  TYNI L   A   N+D     ++ + E  L PD+ T+  ++ 
Sbjct: 377 TLLLKME--ERGLSPDTKTYNIFLSLYANNGNIDGALKCYRRIREVGLFPDVVTHRALLH 434

Query: 130 AYGKNGMIKEMESVLSRMKSNQCK------PDIITFNL---------------------- 161
              +  M++++E+V++ M+ +         P +I   +                      
Sbjct: 435 VLSERNMVEDVENVIAEMEKSHILLDEHSLPRVIKMYINEGLLDRAKILLEKYRLDTELS 494

Query: 162 ------LIDSYGKRQAFDKMEQVF---KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
                 +ID+Y ++  + + E +F   + L  S +K  +  +N MI  YGKA L  KA  
Sbjct: 495 PRISAAIIDAYAEKGLWFEAESIFLWKRDL--SGKKMDVMEYNVMIKAYGKAELYEKAFL 552

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +F+ M      P   TY  +I M+   D V  AR +  E+ ++G      T +A++ +Y 
Sbjct: 553 LFKSMKNRGTWPDECTYNSLIQMFSGGDLVDEARRLLTEMQRMGFKPTCQTFSAVIASYA 612

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             GL ++A  +++   +  V P+   Y +L   + +    E   K  + ME++GI  N+ 
Sbjct: 613 RLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAEIGQAEEALKYFRLMEKSGIAENQI 672

Query: 333 FFLEALETFS 342
                ++ FS
Sbjct: 673 VLTSLIKAFS 682



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 118/283 (41%), Gaps = 20/283 (7%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           + +  FQ  K  +   PN++ YNI+LR   QA+  D++   + E+ E+ + P   TY  +
Sbjct: 143 RVIQVFQWFKSQKDYVPNVIHYNIVLRTLGQAQKWDELRLCWNEMAENGVVPTNNTYGML 202

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D YGK G++KE    +  M      PD +T N ++        FD  ++ +K       
Sbjct: 203 IDVYGKVGLVKEALLWIKHMTVRGIFPDEVTMNTVVRVLKDAGEFDSADKFYKDWCRGLV 262

Query: 188 KPTLPTFNSMIINYG----------KARLQGKAEYVFQKMTAMKYTPSF----------I 227
           +      NS + ++G          K  L  +   +  ++   K +P             
Sbjct: 263 ELNDFDLNSRVEDFGVNSAVEPITPKHFLLTELFRIGTRIPNRKVSPEVDNCVRKPRLTS 322

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           TY  +I +YG    +  A  +F E+   G  M   T N M+     +G   EA+ L    
Sbjct: 323 TYNTLIDLYGKAGRLKDAANVFGEMLTTGISMDTITFNTMIYTCGSHGHLAEAETLLLKM 382

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              G++PD+ TY +    Y      +   K  +R+ + G+ P+
Sbjct: 383 EERGLSPDTKTYNIFLSLYANNGNIDGALKCYRRIREVGLFPD 425



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/260 (19%), Positives = 117/260 (45%), Gaps = 1/260 (0%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           K +++ YN++++A  +A   ++   LFK +      PD  TYN ++  +    ++ E   
Sbjct: 528 KMDVMEYNVMIKAYGKAELYEKAFLLFKSMKNRGTWPDECTYNSLIQMFSGGDLVDEARR 587

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +L+ M+    KP   TF+ +I SY +        +V+  ++H+  +P    +  ++  + 
Sbjct: 588 LLTEMQRMGFKPTCQTFSAVIASYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFA 647

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           +     +A   F+ M       + I    +I  +    ++  AR I++ +  +       
Sbjct: 648 EIGQAEEALKYFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMEDGADTI 707

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
             N+M+  Y   G+ +EA  +FE+    G     S   ++Y  Y    M +   ++ + M
Sbjct: 708 ASNSMINLYADLGMVSEAKQVFEDLRERGYADGVSFATMIY-LYKNIGMLDEAIEVAEEM 766

Query: 323 EQNGIVPNKRFFLEALETFS 342
           +++G++ +   F + +E ++
Sbjct: 767 KESGLLRDATSFRKVIECYA 786



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/347 (19%), Positives = 139/347 (40%), Gaps = 60/347 (17%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           + Q+ Y+ +   Y+ ++  +G+  +       ++EM  +G  P  + Y  LI  +     
Sbjct: 152 KSQKDYVPNVIHYNIVLRTLGQAQKWDELRLCWNEMAENGVVPTNNTYGMLIDVY----G 207

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           K   + +AL + + M  +    P+ VT N ++R    A   D  +  +K+    ++  + 
Sbjct: 208 KVGLVKEALLWIKHMT-VRGIFPDEVTMNTVVRVLKDAGEFDSADKFYKDWCRGLVELND 266

Query: 122 YTYNGVMDAYGKNG----------MIKEMESVLSRMKSNQCKPDI----------ITFNL 161
           +  N  ++ +G N           ++ E+  + +R+ + +  P++           T+N 
Sbjct: 267 FDLNSRVEDFGVNSAVEPITPKHFLLTELFRIGTRIPNRKVSPEVDNCVRKPRLTSTYNT 326

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           LID YGK         VF  ++ +       TFN+MI   G      +AE +  KM    
Sbjct: 327 LIDLYGKAGRLKDAANVFGEMLTTGISMDTITFNTMIYTCGSHGHLAEAETLLLKMEERG 386

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
            +P   TY   +++Y    N+  A + +  + ++G                         
Sbjct: 387 LSPDTKTYNIFLSLYANNGNIDGALKCYRRIREVG------------------------- 421

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
            LF         PD  T++ L    ++ NM E V+ ++  ME++ I+
Sbjct: 422 -LF---------PDVVTHRALLHVLSERNMVEDVENVIAEMEKSHIL 458



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 133/332 (40%), Gaps = 40/332 (12%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRN-SGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           I + +I    +KG    A  +F   R+ SG + D   YN +I A+     KA+   KA  
Sbjct: 497 ISAAIIDAYAEKGLWFEAESIFLWKRDLSGKKMDVMEYNVMIKAY----GKAELYEKAFL 552

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            F+ MK      P+  TYN L++  +    VD+   L  E+      P   T++ V+ +Y
Sbjct: 553 LFKSMKN-RGTWPDECTYNSLIQMFSGGDLVDEARRLLTEMQRMGFKPTCQTFSAVIASY 611

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            + G++ +   V   M     +P+ I + +L++ + +    ++  + F+ +  S      
Sbjct: 612 ARLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAEIGQAEEALKYFRLMEKSGIAENQ 671

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY--------------- 236
               S+I  + K      A  ++ +M  M+     I    +I +Y               
Sbjct: 672 IVLTSLIKAFSKVGSLEDARRIYNRMKNMEDGADTIASNSMINLYADLGMVSEAKQVFED 731

Query: 237 ----GYCDNVSRAREIF--------DELSKLGKDMKVSTL-------NAMLEAYCMNGLP 277
               GY D VS A  I+        DE  ++ ++MK S L         ++E Y +NG  
Sbjct: 732 LRERGYADGVSFATMIYLYKNIGMLDEAIEVAEEMKESGLLRDATSFRKVIECYAINGQV 791

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E   L        + PD+ T+ +L+    K 
Sbjct: 792 RECGELLHEMVTRKLLPDNRTFNVLFTILKKG 823



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 122/331 (36%), Gaps = 78/331 (23%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y  L+    + GQ   A+  F  M  SG   +  V  +LI A      K  +L  A   
Sbjct: 638 LYGVLVNGFAEIGQAEEALKYFRLMEKSGIAENQIVLTSLIKAF----SKVGSLEDARRI 693

Query: 73  FQKMKGMERCKPNIVTYNIL-----LRACAQARNV------------------------- 102
           + +MK ME     I + +++     L   ++A+ V                         
Sbjct: 694 YNRMKNMEDGADTIASNSMINLYADLGMVSEAKQVFEDLRERGYADGVSFATMIYLYKNI 753

Query: 103 ---DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
              D+   + +E+ ES L  D  ++  V++ Y  NG ++E   +L  M + +  PD  TF
Sbjct: 754 GMLDEAIEVAEEMKESGLLRDATSFRKVIECYAINGQVRECGELLHEMVTRKLLPDNRTF 813

Query: 160 NLLIDSYGK----------------------RQAFDKMEQVFKSL-MHSKEKPTLPTF-- 194
           N+L     K                      RQA   +  VF  L +H+    +  TF  
Sbjct: 814 NVLFTILKKGVIPLEAVSQLESAFHEEKTYARQAI--IAAVFSGLGLHASALESCDTFLK 871

Query: 195 ----------NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
                     N  I  YG A    KA  +F KM      P  +TY  ++  YG    +  
Sbjct: 872 AEVQLDSFAYNVAIYAYGAAEKIDKALNIFMKMKDQNLKPDLVTYINLVGCYGKAGMIEG 931

Query: 245 AREIFDELS----KLGKDMKVSTLNAMLEAY 271
            ++I+ +L     +L K +  + +N    A+
Sbjct: 932 VKQIYSQLKYGEIELNKSLFFAIINTFRSAH 962



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 82/204 (40%), Gaps = 28/204 (13%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+   + D   + K+I      GQ R    L  EM      PD   +N L T        
Sbjct: 767 KESGLLRDATSFRKVIECYAINGQVRECGELLHEMVTRKLLPDNRTFNVLFTILKKGVIP 826

Query: 63  AKALAKALGYFQKMK--------------------GMERCKP--------NIVTYNILLR 94
            +A+++    F + K                     +E C          +   YN+ + 
Sbjct: 827 LEAVSQLESAFHEEKTYARQAIIAAVFSGLGLHASALESCDTFLKAEVQLDSFAYNVAIY 886

Query: 95  ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
           A   A  +D+   +F ++ +  L PD+ TY  ++  YGK GMI+ ++ + S++K  + + 
Sbjct: 887 AYGAAEKIDKALNIFMKMKDQNLKPDLVTYINLVGCYGKAGMIEGVKQIYSQLKYGEIEL 946

Query: 155 DIITFNLLIDSYGKRQAFDKMEQV 178
           +   F  +I+++     +D ++ V
Sbjct: 947 NKSLFFAIINTFRSAHRYDLVQMV 970


>gi|359482557|ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
           [Vitis vinifera]
          Length = 990

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 151/341 (44%), Gaps = 27/341 (7%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT-----AHLH 58
           ++ Y  +   Y+ +I  +         ++LFS+M  + CRP+   ++ ++        L 
Sbjct: 140 EKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLVAEGQLG 199

Query: 59  TRDKAKA-------------LAKALGYFQKMKGMERCKPNIVTYN---------ILLRAC 96
             D+                L + L          R   N+ +++          +L + 
Sbjct: 200 RLDEVVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRLFCNMWSFHDEGDRDAYMSMLESL 259

Query: 97  AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
             A    +   L  ++HE  ++ D   YN V+ A GK     ++  +  +MK +   PDI
Sbjct: 260 CDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDI 319

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
            ++N+LI S+G+    ++  ++F+ L +S  KP + +FNS+I   GK     +A   F++
Sbjct: 320 FSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKE 379

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M     +P  +TY  +I  +G  D V  A  +FDE+   G    + T N +L+    +G 
Sbjct: 380 MREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGR 439

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
             EA  L+      G+TPDS TY +L +  + ++ K  V++
Sbjct: 440 TAEAVDLYAKLKQQGLTPDSITYAVLERLQSGSHQKVRVRR 480



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 123/302 (40%), Gaps = 41/302 (13%)

Query: 70  LGYFQKMKGMERC---------KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           +G F     +ERC         + N  TY  LL+A  ++ N ++   ++ EL       D
Sbjct: 17  IGIFGGGADVERCFDLVKKWDLQMNCYTYKCLLQAHLRSNNSNKAFEVYVELRRRGYKLD 76

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           I+ YN ++DA  K+  + ++  V   MK   C+PD  T+ ++I   GK    D+   +F+
Sbjct: 77  IFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQ 136

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +      P L  +N+MI      R+  K  ++F KM      P+  T+  I+ +     
Sbjct: 137 EMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLVAEG 196

Query: 241 NVSRAREIFD----------------ELSKLGKDMKVSTL----------------NAML 268
            + R  E+ +                 LSKLG   +   L                 +ML
Sbjct: 197 QLGRLDEVVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRLFCNMWSFHDEGDRDAYMSML 256

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           E+ C  G  TEA  L    H   ++ D+  Y  +  A  K      +  L ++M+Q+G  
Sbjct: 257 ESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPS 316

Query: 329 PN 330
           P+
Sbjct: 317 PD 318



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/368 (20%), Positives = 151/368 (41%), Gaps = 41/368 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I + GK G+   ++ LF EM   G  P+   YN +I A  + R     + K 
Sbjct: 111 DEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNR----MVDKT 166

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY----- 124
           +  F KM     C+PN  T++++L        + +++ +  E+    +   IY Y     
Sbjct: 167 IFLFSKMV-ENNCRPNGFTFSVILNVLVAEGQLGRLDEVV-EVSNKFMNKSIYAYLVRTL 224

Query: 125 ---------------------NGVMDAY-------GKNGMIKEMESVLSRMKSNQCKPDI 156
                                 G  DAY          G   E   +LS++   +   D 
Sbjct: 225 SKLGHASEAHRLFCNMWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDT 284

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           + +N ++ + GK +    +  +++ +      P + ++N +I ++G+A    +A  +F++
Sbjct: 285 VMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEE 344

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           +      P  I++  +I   G   ++  A   F E+ + G    V T + ++E +     
Sbjct: 345 LENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDK 404

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF-- 334
              A  LF+     G +P+  TY +L     ++        L  +++Q G+ P+   +  
Sbjct: 405 VEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAV 464

Query: 335 LEALETFS 342
           LE L++ S
Sbjct: 465 LERLQSGS 472



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/363 (19%), Positives = 148/363 (40%), Gaps = 37/363 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  L+    +   +  A  ++ E+R  G + D   YN L+ A      K   + +    F
Sbjct: 45  YKCLLQAHLRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDA----LAKDNKVDQVYMVF 100

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + MK  + C+P+  TY I++R   +    D+   LF+E+ E    P++  YN ++ A   
Sbjct: 101 KDMK-RKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALAN 159

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLID---SYGKRQAFDKMEQVFKSLM------- 183
           N M+ +   + S+M  N C+P+  TF+++++   + G+    D++ +V    M       
Sbjct: 160 NRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLVAEGQLGRLDEVVEVSNKFMNKSIYAY 219

Query: 184 ---------HSKEKPTL-------------PTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
                    H+ E   L               + SM+ +   A    +A  +  K+   +
Sbjct: 220 LVRTLSKLGHASEAHRLFCNMWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKR 279

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
            +   + Y  +++  G     S   ++++++ + G    + + N ++ ++   G   EA 
Sbjct: 280 ISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAV 339

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            +FE   N    PD  ++  L     K    +      K M + G+ P+   +   +E F
Sbjct: 340 KIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECF 399

Query: 342 SSS 344
             +
Sbjct: 400 GKT 402


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 137/315 (43%), Gaps = 7/315 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ LI    ++G+ + A+ +   M   G +PD   YN++I        K++ + +A  Y
Sbjct: 483 IYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLC----KSRKMEEAKDY 538

Query: 73  FQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
             +M  +ER  KPN+ TY  L+    ++  +   +  FKE+    +AP+      ++D Y
Sbjct: 539 LVEM--IERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGY 596

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G   E  S+   M      PD+ T++ LI    +        ++    +     P +
Sbjct: 597 CKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDV 656

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+NS+I  + K    GKA  + + M     +P+ ITY  +I        + RARE+FD 
Sbjct: 657 FTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDG 716

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G      T   +++ YC +G  ++A  LF+     GV PDS  Y  L     K   
Sbjct: 717 IPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGN 776

Query: 312 KELVQKLLKRMEQNG 326
            E    L     Q G
Sbjct: 777 TEKALSLFLESVQKG 791



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 149/362 (41%), Gaps = 34/362 (9%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +  ++  +AD   YS LI   GK+ +   A  +  EM + G +P    Y ALI   +   
Sbjct: 296 LMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQG 355

Query: 61  DKAKA---------------------LAKALGYFQKMKG---------MERCKPNIVTYN 90
           D  +A                     L K +  F  M+          M   KP+  TYN
Sbjct: 356 DSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYN 415

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
            ++    + +N  +V  L  E+ +S L P  YT   +++   ++G I++   V   M S 
Sbjct: 416 NMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSL 475

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
             KP+ + +  LI  + +   F +  ++ K +     +P +  +NS+II   K+R   +A
Sbjct: 476 GVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEA 535

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAML 268
           +    +M      P+  TY  +I  +GYC +  +  A   F E+   G         A++
Sbjct: 536 KDYLVEMIERGLKPNVYTYGALI--HGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALI 593

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           + YC  G  TEA  +F       V PD  TY  L     +    +   +LL    + G+V
Sbjct: 594 DGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLV 653

Query: 329 PN 330
           P+
Sbjct: 654 PD 655



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 151/328 (46%), Gaps = 5/328 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  ++      + L++ + K  +  L    ++ M  +    D   Y  LI AH    + 
Sbjct: 193 KRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNA 252

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +   K L +  + KG   C P++VTYN+++    +A  VD+   L K + +  L  D++
Sbjct: 253 KEG--KRLLFEMEEKG---CSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVF 307

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY+ ++D +GK     E + +L  M S   KP  + +  LID + ++    +  +V + +
Sbjct: 308 TYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEM 367

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           +    K  L T+N+++    K     KA+ +  +M  +   P   TY  +I  Y    N 
Sbjct: 368 LARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNT 427

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           SR +++  E+ K        T   ++   C +G   +A  +FE   ++GV P++  Y  L
Sbjct: 428 SRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTL 487

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
            K + +    +   ++LK M++ G+ P+
Sbjct: 488 IKGHVQEGRFQEAVRILKVMDKKGVQPD 515



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 159/375 (42%), Gaps = 41/375 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I  + K  +   A     EM   G +P+   Y ALI    H   K+  +  A
Sbjct: 515 DVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALI----HGYCKSGEMQVA 570

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
             YF++M G     PN V    L+    +  +  +  ++F+ +    + PD+ TY+ ++ 
Sbjct: 571 DRYFKEMLGC-GIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIH 629

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              +NG ++    +LS        PD+ T+N +I  + K+    K  Q+ + +      P
Sbjct: 630 GLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISP 689

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + T+N++I    KA    +A  +F  +       + +TY  II  Y    N+S+A  +F
Sbjct: 690 NIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLF 749

Query: 250 DELS-------------------KLGKDMK---------------VSTLNAMLEAYCMNG 275
           DE++                   K G   K                S+LNA+++ +C +G
Sbjct: 750 DEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFCKSG 809

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335
              EA+ L E+  +  V PD  TY +L   + K    +  ++    M++  ++PN   + 
Sbjct: 810 KVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYT 869

Query: 336 EALETFSSSLAGSQS 350
             L  +  ++AG +S
Sbjct: 870 ALLSGY--NMAGRRS 882



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 143/330 (43%), Gaps = 12/330 (3%)

Query: 7    YIADTGI------YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
            Y+   GI      Y+ LI  + K G+   A  LF  +   G   +   Y  +I  +    
Sbjct: 681  YMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYC--- 737

Query: 61   DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
             K+  L+KA   F +M  ++   P+   Y+ L+  C +  N ++  +LF E  +   A  
Sbjct: 738  -KSGNLSKAFRLFDEMT-LKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFAS- 794

Query: 121  IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
              + N +MD + K+G + E   +L  M     KPD +T+ +LID + K     + EQ F 
Sbjct: 795  TSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFV 854

Query: 181  SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
             +      P   T+ +++  Y  A  + +   +F +M A    P  +T+  +I  +    
Sbjct: 855  DMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEG 914

Query: 241  NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            +  +  ++ D++ K G ++  +  + +++  C     +E   + E     G+    +T  
Sbjct: 915  DHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCS 974

Query: 301  LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             L + + KA   +   ++LK M +   VP+
Sbjct: 975  TLVRCFHKAGKMDGAARVLKSMVRFKWVPD 1004



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 142/364 (39%), Gaps = 36/364 (9%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK--------- 64
           Y+ L+  + K G    A  L +EM   G +PD   YN +I  +L  ++ ++         
Sbjct: 379 YNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMK 438

Query: 65  ----------------------ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
                                 ++  A   F+ M  +   KPN V Y  L++   Q    
Sbjct: 439 KSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSL-GVKPNAVIYTTLIKGHVQEGRF 497

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
            +   + K + +  + PD+  YN V+    K+  ++E +  L  M     KP++ T+  L
Sbjct: 498 QEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGAL 557

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           I  Y K       ++ FK ++     P      ++I  Y K     +A  +F+ M     
Sbjct: 558 IHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSV 617

Query: 223 TPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
            P   TY  +I  +G   N  +  A E+  E  + G    V T N+++  +C  G   +A
Sbjct: 618 HPDVRTYSALI--HGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKA 675

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALET 340
             L E     G++P+  TY  L     KA   E  ++L   +   G+  N   +   ++ 
Sbjct: 676 FQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDG 735

Query: 341 FSSS 344
           +  S
Sbjct: 736 YCKS 739



 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 36/182 (19%), Positives = 72/182 (39%)

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++D Y K G+  E  S     K N     ++  N L+    K    +   + +  ++ + 
Sbjct: 172 LIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEAN 231

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
               + T+  +I  + +A    + + +  +M     +PS +TY  +I        V  A 
Sbjct: 232 VLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAF 291

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+   + K G    V T + +++ +      TEA L+ E   + G+ P    Y  L   +
Sbjct: 292 ELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGF 351

Query: 307 TK 308
            +
Sbjct: 352 MR 353



 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 67/185 (36%)

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           + F LLID Y K+  FD+    F     +     L   N ++ +  KA         +  
Sbjct: 167 VVFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNG 226

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M          TY  +I  +    N    + +  E+ + G    + T N ++   C  G 
Sbjct: 227 MLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGE 286

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336
             EA  L +     G+  D  TY +L   + K       + +L+ M   G+ P    +  
Sbjct: 287 VDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTA 346

Query: 337 ALETF 341
            ++ F
Sbjct: 347 LIDGF 351


>gi|357502615|ref|XP_003621596.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496611|gb|AES77814.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 138/312 (44%), Gaps = 6/312 (1%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           + KQ   IA   + S +I  +G+ G+   A+ LF   R  G       ++A+I+A+    
Sbjct: 168 IWKQNGRIAKGKLVSTMIGTLGRLGEINHALRLFESARLEGHGNTVYSFSAMISAY---- 223

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAP 119
            +    + A+  F+ M+      PN+++YN L+ A A+   + D V   F E+    + P
Sbjct: 224 GRNGHFSDAVDLFRSMRSWG-VYPNLISYNSLIDAGAKGEVDFDVVVKFFDEMLAEGIVP 282

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D  TYN ++      GM +  + +LS M       D  T+N  +D+  K    D   +V 
Sbjct: 283 DRLTYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVL 342

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           + +   +  PT+ T+++MI    KA L   A  ++++M     +   ++Y  ++ +Y   
Sbjct: 343 EEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGIYAKL 402

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
                A     E+   G    V T NA+L  Y   G+  E   LFE      + P++ TY
Sbjct: 403 GRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTY 462

Query: 300 KLLYKAYTKANM 311
             +   YTK  M
Sbjct: 463 STMIDVYTKGGM 474



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 158/389 (40%), Gaps = 51/389 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +S +I+  G+ G    A+ LF  MR+ G  P+   YN+LI A          + K   +F
Sbjct: 216 FSAMISAYGRNGHFSDAVDLFRSMRSWGVYPNLISYNSLIDAGAKGEVDFDVVVK---FF 272

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   E   P+ +TYN LL  CA     +    L  E+ +  +  D +TYN  +D   K
Sbjct: 273 DEMLA-EGIVPDRLTYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCK 331

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK----------------------RQA 171
            G I     VL  M S +  P ++T++ +ID   K                      R +
Sbjct: 332 GGQIDLARRVLEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVS 391

Query: 172 FDKMEQVFKSLMHSKE-------------KPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           ++ M  ++  L    E             K  + T+N+++  YG+  +  +   +F++M 
Sbjct: 392 YNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEMK 451

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           A    P+ +TY  +I +Y        A +++ +  K   ++ V    +++++ C NGL  
Sbjct: 452 AWNIYPNTLTYSTMIDVYTKGGMFQEAMDVYKDFKKAQLEVDVVFYTSIIDSLCKNGLVE 511

Query: 279 EADLLFENSHNMGVTPDSSTYK-----------LLYKAYTKANMKELVQKLLKRMEQNGI 327
            + +L       G+ P+  T+            L Y  +  +   E   + L  M  +G 
Sbjct: 512 SSIMLLIAMIEKGIKPNVVTFNSIIDASRQSPTLEYGVHGSSQAVEYPTEQLSSMLIDGA 571

Query: 328 VPNKRFFLEALETFSSSLAGSQSGSAKTD 356
             NK      L+ F   LA  ++G  + D
Sbjct: 572 FQNKTGDDRILKMF-EQLAAEKAGHREKD 599



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 137/322 (42%), Gaps = 41/322 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--LHTRDKAKALAKALG 71
           Y+ ++ +  K G+   A+    EM + G + D   YNAL++ +      D+ + L     
Sbjct: 392 YNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRL----- 446

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            F++MK      PN +TY+ ++    +     +   ++K+  ++ L  D+  Y  ++D+ 
Sbjct: 447 -FEEMKAWN-IYPNTLTYSTMIDVYTKGGMFQEAMDVYKDFKKAQLEVDVVFYTSIIDSL 504

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS-----------YGKRQAFDKMEQVFK 180
            KNG+++    +L  M     KP+++TFN +ID+           +G  QA +   +   
Sbjct: 505 CKNGLVESSIMLLIAMIEKGIKPNVVTFNSIIDASRQSPTLEYGVHGSSQAVEYPTEQLS 564

Query: 181 SLM-------HSKEKPTLPTFNSMIINYGKAR---LQGKAE-----YVFQKMTAMKYTPS 225
           S++        + +   L  F  +       R    +G+ +     ++FQKM  +   P+
Sbjct: 565 SMLIDGAFQNKTGDDRILKMFEQLAAEKAGHREKDRKGRQDQHCILWLFQKMHELNIKPN 624

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
            +T+  I+     C++   A  +   L +L  +      + +L  Y    +  +A  LF+
Sbjct: 625 VVTFSAILNACSRCNSFEDASMLLGAL-RLFDNQVYGVTHGLLMGY-REQVWFQAQTLFD 682

Query: 286 NSHNMGVTPDSSTYKLLYKAYT 307
               M    DSST    Y A T
Sbjct: 683 EMRRM----DSSTASAFYNALT 700


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 144/341 (42%), Gaps = 9/341 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--D 61
           +R  + D   Y+ L+    K+   + A+ L  EMR+ GC PD   YN ++         D
Sbjct: 180 RRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVD 239

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            A    K+L  +        C+PN V+YNI+L+    A   +    L  E+      P++
Sbjct: 240 DAMEFLKSLPSYG-------CEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNV 292

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            T+N ++    + G+++    +L ++    C P+ +++N ++ ++ K++  D+     + 
Sbjct: 293 VTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVEL 352

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++ S   P + ++N+++    +      A  +  ++     TP  I+Y  +I        
Sbjct: 353 MVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGK 412

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
              A E+ +E+   G    + T + +    C  G   EA   F    +MG+ P++  Y  
Sbjct: 413 TEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNA 472

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           +     K         L   M  NG +PN+  +   +E  +
Sbjct: 473 ILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLA 513



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 136/321 (42%), Gaps = 19/321 (5%)

Query: 12  GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKA 69
           G  + LI  +   G+T  A  + +      C PD   YNA++  +  T   D A+ L  A
Sbjct: 91  GPCAALIKKLCASGRTAEARRVLAS-----CEPDVMSYNAMVAGYCVTGQLDNARRLVAA 145

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           +            +P+  TYN L+R  C + R  D   A+  ++      PD+ TY  ++
Sbjct: 146 MPM----------EPDTYTYNTLIRGLCGRGRT-DNALAVLDDMLRRGCVPDVVTYTILL 194

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           +A  K    K+   +L  M+   C PDI+T+N++++   +    D   +  KSL     +
Sbjct: 195 EATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCE 254

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   ++N ++     A     AE +  +M+     P+ +T+  +I+       V  A EI
Sbjct: 255 PNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEI 314

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            D++ K G      + N +L A+C       A    E   + G  PD  +Y  L  A  +
Sbjct: 315 LDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCR 374

Query: 309 ANMKELVQKLLKRMEQNGIVP 329
               +   +LL +++  G  P
Sbjct: 375 GGEVDAAVELLHQLKDKGCTP 395



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 137/325 (42%), Gaps = 16/325 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++A     GQ   A  L + M      PD   YN LI   L  R +      A
Sbjct: 119 DVMSYNAMVAGYCVTGQLDNARRLVAAMPM---EPDTYTYNTLIRG-LCGRGRTD---NA 171

Query: 70  LGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           L     M  + R C P++VTY ILL A  +     Q   L  E+ +   APDI TYN V+
Sbjct: 172 LAVLDDM--LRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVV 229

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           +   + G + +    L  + S  C+P+ +++N+++      + ++  E++   +      
Sbjct: 230 NGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRP 289

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P + TFN +I    +  L   A  +  ++     TP+ ++Y  I+  +     + RA   
Sbjct: 290 PNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAF 349

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKA 305
            + +   G    + + N +L A C  G   E D   E  H +   G TP   +Y  +   
Sbjct: 350 VELMVSSGCYPDIVSYNTLLTALCRGG---EVDAAVELLHQLKDKGCTPVLISYNTVIDG 406

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
            TKA   E   +LL  M   G+ P+
Sbjct: 407 LTKAGKTEEALELLNEMVTKGLQPD 431



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 135/330 (40%), Gaps = 15/330 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  Y+ LI  +  +G+T  A+ +  +M   GC PD   Y  L+          +A  K 
Sbjct: 151 DTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILL----------EATCKR 200

Query: 70  LGYFQKMKGMER-----CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            GY Q +K ++      C P+IVTYN+++    Q   VD      K L      P+  +Y
Sbjct: 201 SGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSY 260

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N V+         ++ E +++ M      P+++TFN+LI    +R   +   ++   +  
Sbjct: 261 NIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPK 320

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P   ++N ++  + K +   +A    + M +    P  ++Y  ++T       V  
Sbjct: 321 YGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDA 380

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A E+  +L   G    + + N +++     G   EA  L       G+ PD  TY  +  
Sbjct: 381 AVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISS 440

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
              +    E   K   +++  GI PN   +
Sbjct: 441 GLCREGRIEEAIKAFCKVQDMGIRPNTVLY 470



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/278 (20%), Positives = 104/278 (37%), Gaps = 14/278 (5%)

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L +A+   + M G+E          ++ + CA  R  +    L      +   PD+ +YN
Sbjct: 72  LEEAIRLVESMAGLEPSAAGPCA-ALIKKLCASGRTAEARRVL------ASCEPDVMSYN 124

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++  Y   G +     +++ M     +PD  T+N LI     R   D    V   ++  
Sbjct: 125 AMVAGYCVTGQLDNARRLVAAMPM---EPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRR 181

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VS 243
              P + T+  ++    K     +A  +  +M      P  +TY  ++   G C    V 
Sbjct: 182 GCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVN--GICQEGRVD 239

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A E    L   G +    + N +L+  C      +A+ L       G  P+  T+ +L 
Sbjct: 240 DAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLI 299

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
               +  + E   ++L ++ + G  PN   +   L  F
Sbjct: 300 SFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAF 337


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 162/365 (44%), Gaps = 56/365 (15%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I D   Y+  I+ + K G+    + +  EM   G  PD   + ++I+       KA  + 
Sbjct: 184 IPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLC----KANRID 239

Query: 68  KALGYFQKMKGM-ER-CKPNIVTYNILLRACAQARNVDQVNALFKELH------------ 113
            A   FQ  KGM ER C P+ +TY+I+L   ++A  +D V+ + + +             
Sbjct: 240 DA---FQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYT 296

Query: 114 -------------------------ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM- 147
                                    ES   P++ +YN V+D   K+G + +   +  +M 
Sbjct: 297 HNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKML 356

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK----PTLPTFNSMIINYGK 203
            S  CKPD+I FN LI  + K     ++ Q  + L+  K K    P + T+N++I    K
Sbjct: 357 DSGCCKPDVIFFNTLISGFCKA---GRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSK 413

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
                +A+ + Q+M A+   P+ +TY  +I  Y        A  +FDE+S  G    + T
Sbjct: 414 FGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIIT 473

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMG--VTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            N +L A+   G+ ++A+ +++   N     +PD+ TY++L   Y +A   E    LL+ 
Sbjct: 474 YNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQE 533

Query: 322 MEQNG 326
           M   G
Sbjct: 534 MTARG 538



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 142/301 (47%), Gaps = 8/301 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGC-RPDPSVYNALITAHLHTRDKAKALAKALGY 72
           Y+ +I  + K G    A  L  +M +SGC +PD   +N LI+       KA  L++A   
Sbjct: 332 YNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFC----KAGRLSQAHQL 387

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             +MK    C P++VTYN L+   ++  ++ Q   L +E+      P++ TY  +++ Y 
Sbjct: 388 LIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYA 447

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH--SKEKPT 190
           K+GM +E ES+   M +  C PDIIT+N ++ ++ K     K E V++ L +  S   P 
Sbjct: 448 KHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPD 507

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV-SRAREIF 249
             T+  +I  Y +A    +   + Q+MTA  ++    TY  +I      + V S+A  ++
Sbjct: 508 AITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLIAKLAETEEVPSKALAVY 567

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            ++         S  N+++  +   G    A  + +  +  G   D+S  + L K    A
Sbjct: 568 QQMLDQDCVPSASIFNSLVRLFLRTGDVNSARSMVQEMNEKGHLVDASNLEALNKESNDA 627

Query: 310 N 310
           +
Sbjct: 628 S 628



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 164/393 (41%), Gaps = 63/393 (16%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y A    Y+ LI  + K G    A  L  +M ++GC P+   Y ALI      R    A+
Sbjct: 6   YDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAI 65

Query: 67  AKALGYFQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
                  Q +K M R  C+P++VTYN L+     A  +D    + +EL  +  AP+  TY
Sbjct: 66  -------QTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITY 118

Query: 125 NGVMDAYGK-------NGMIKEM---ESVL--------------SRMKSN--QCK----- 153
           + ++    +        G+I+EM    SV               +R +S+  +C+     
Sbjct: 119 STLVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEM 178

Query: 154 ------PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
                 PD++T+N  I    K    DK  ++ + +      P + TF S+I    KA   
Sbjct: 179 IESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRI 238

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR------EIFDELS--KLGKDM 259
             A  VF+ M      P  +TY  ++      DN+SRA       E+ + +   K G  M
Sbjct: 239 DDAFQVFKGMLERGCVPDSLTYSIML------DNLSRANRLDTVDEVLEHMQAMKAGCVM 292

Query: 260 KVSTLNAMLEAYCMNG-LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
           +V T NA + A C +G  P   ++L     + G  P+  +Y  +     K+   +   KL
Sbjct: 293 EVYTHNAFIGALCRSGKFPLAKNILLGMIES-GSLPNLLSYNFVIDGLCKSGNVDDAWKL 351

Query: 319 LKRMEQNGIV-PNKRFFLEALETFSSSLAGSQS 350
            ++M  +G   P+  FF   +  F  +   SQ+
Sbjct: 352 SRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQA 384



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 92/402 (22%), Positives = 143/402 (35%), Gaps = 99/402 (24%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  + K  +   A+     M  SGC PD   YN+LI    H    A  +  A    
Sbjct: 48  YTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLI----HGLCMANRMDDAGLVL 103

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH------------------ 113
           Q++   G     PN +TY+ L+    + R +DQ   L +E+                   
Sbjct: 104 QELVRNGF---APNHITYSTLVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGF 160

Query: 114 -------------------ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
                              ES   PD+ TYN  +    K G + +   +L  M      P
Sbjct: 161 CEARCQSSRYECRDGDEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPP 220

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           D++TF  +I    K    D   QVFK ++     P   T++ M+ N  +A      + V 
Sbjct: 221 DVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVL 280

Query: 215 QKMTAMK-------YT------------------------------PSFITYECIITMYG 237
           + M AMK       YT                              P+ ++Y  +I    
Sbjct: 281 EHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVI---- 336

Query: 238 YCDNVSRAREIFDELSKLGKDM--------KVSTLNAMLEAYCMNGLPTEA-DLLFENSH 288
             D + ++  + D+  KL + M         V   N ++  +C  G  ++A  LL E   
Sbjct: 337 --DGLCKSGNV-DDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKA 393

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                PD  TY  L    +K    +  + LL+ M+  G  PN
Sbjct: 394 KNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPN 435



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 116/269 (43%), Gaps = 41/269 (15%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+ +   + D   Y+ LI    K G  + A  L  EM+  GC+P+   Y ALI  +    
Sbjct: 391 MKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYA--- 447

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE--SILA 118
            K     +A   F +M   + C P+I+TYN +L A ++A  + +   ++++L    S  +
Sbjct: 448 -KHGMYEEAESLFDEMSA-KGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCS 505

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD  TY  ++D Y +    ++  ++L  M +     D  T+N+LI               
Sbjct: 506 PDAITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLI--------------- 550

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
              L  ++E P+                  KA  V+Q+M      PS   +  ++ ++  
Sbjct: 551 -AKLAETEEVPS------------------KALAVYQQMLDQDCVPSASIFNSLVRLFLR 591

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAM 267
             +V+ AR +  E+++ G  +  S L A+
Sbjct: 592 TGDVNSARSMVQEMNEKGHLVDASNLEAL 620



 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 47/114 (41%)

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           M A  Y  S +TY  +I       ++  A+ +  +++  G    V T  A+++  C    
Sbjct: 1   MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARR 60

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           P +A    +     G  PD  TY  L      AN  +    +L+ + +NG  PN
Sbjct: 61  PHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPN 114


>gi|299473436|emb|CBN77833.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1139

 Score =  110 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 73/253 (28%), Positives = 120/253 (47%), Gaps = 8/253 (3%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P IVT++ L+      R V      F+E+ E+ + PD+   N +++A+ K G   +   
Sbjct: 126 RPTIVTFSTLISRAGACRRVRLAERFFREMLEAGITPDVQAINSLINAFAKAGSPDQALK 185

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           V  +M      P +ITFN LID+ G+    D+  QVF  L  +   P   TF+++I ++ 
Sbjct: 186 VFDQMSRYGVTPSVITFNTLIDACGRAGDIDRARQVFSRLSQAGLSPNDRTFSALIHSHA 245

Query: 203 KARLQGKAEYVF---QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
              +QG+ +  F   Q+M A    P+ +TY  +I   G    ++RA +  DE+   G + 
Sbjct: 246 ---VQGQVDEAFSWLQEMRARGLEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGIEP 302

Query: 260 KVSTLNAMLEAYCMNGLPTEADL-LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
            V T   +++A C  G   E    LF+     G  P+  T   L  A  KA+  +L   +
Sbjct: 303 NVVTWTTLIDA-CGKGKELEWSFKLFKEMRERGTVPNGVTCSALMDACLKADELDLAFAV 361

Query: 319 LKRMEQNGIVPNK 331
           L+ M   GI P +
Sbjct: 362 LEHMLDVGIEPTE 374



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 125/255 (49%), Gaps = 5/255 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +S LI+  G   + RLA   F EM  +G  PD    N+LI A      KA +  +AL  F
Sbjct: 132 FSTLISRAGACRRVRLAERFFREMLEAGITPDVQAINSLINAFA----KAGSPDQALKVF 187

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M       P+++T+N L+ AC +A ++D+   +F  L ++ L+P+  T++ ++ ++  
Sbjct: 188 DQMSRYG-VTPSVITFNTLIDACGRAGDIDRARQVFSRLSQAGLSPNDRTFSALIHSHAV 246

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G + E  S L  M++   +P+ +T++ LI++ G+     +  Q    +  +  +P + T
Sbjct: 247 QGQVDEAFSWLQEMRARGLEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGIEPNVVT 306

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + ++I   GK +    +  +F++M      P+ +T   ++      D +  A  + + + 
Sbjct: 307 WTTLIDACGKGKELEWSFKLFKEMRERGTVPNGVTCSALMDACLKADELDLAFAVLEHML 366

Query: 254 KLGKDMKVSTLNAML 268
            +G +    T  ++L
Sbjct: 367 DVGIEPTEVTYTSLL 381



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 95/206 (46%)

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N  + A G  G I +  +    M + Q +P I+TF+ LI   G  +     E+ F+ ++ 
Sbjct: 98  NVFLRALGDAGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLE 157

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
           +   P +   NS+I  + KA    +A  VF +M+    TPS IT+  +I   G   ++ R
Sbjct: 158 AGITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDR 217

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           AR++F  LS+ G      T +A++ ++ + G   EA    +     G+ P+  TY  L  
Sbjct: 218 ARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALIN 277

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
           A  +A       + L  M   GI PN
Sbjct: 278 ACGRAGQLARAFQTLDEMFGTGIEPN 303



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 69/150 (46%)

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
           S ++  +P  N  +   G A         ++ M A +  P+ +T+  +I+  G C  V  
Sbjct: 88  SPKQGGVPACNVFLRALGDAGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRL 147

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A   F E+ + G    V  +N+++ A+   G P +A  +F+     GVTP   T+  L  
Sbjct: 148 AERFFREMLEAGITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLID 207

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           A  +A   +  +++  R+ Q G+ PN R F
Sbjct: 208 ACGRAGDIDRARQVFSRLSQAGLSPNDRTF 237



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 77/172 (44%)

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
           N+ + + G     D     +++++  + +PT+ TF+++I   G  R    AE  F++M  
Sbjct: 98  NVFLRALGDAGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLE 157

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
              TP       +I  +    +  +A ++FD++S+ G    V T N +++A    G    
Sbjct: 158 AGITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDR 217

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           A  +F      G++P+  T+  L  ++      +     L+ M   G+ PN+
Sbjct: 218 ARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNR 269



 Score = 42.4 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 13/108 (12%)

Query: 33  LFSEMRNSGCRPDPSVYNALIT--AHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90
           +F EMR+ G RPD   YNAL+   A L   D+A  + + +    +  G++   P+ VTY 
Sbjct: 881 VFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQ---PDAVTYT 937

Query: 91  ILLRACAQA--RNVDQVNALFKEL-----HESILA-PDIYTYNGVMDA 130
            L++A A+A    V++   +F  +     H S  A P   TY  +M A
Sbjct: 938 SLIKAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRA 985



 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 73/176 (41%), Gaps = 5/176 (2%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           S L+ + G+  Q   A  +   M      PD   +  L+ A     D A AL KA+   +
Sbjct: 546 SDLLQLFGQADQVDAAFKVLEGMVERRDSPDGETWLLLLNA----VDTAGALDKAVELME 601

Query: 75  KMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + +      + N +TY+ LL AC +A+ + +   + + + E+ + P   TY  +M+    
Sbjct: 602 RSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVCRH 661

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           +   K    V   M++   +P + ++  L+ +  +             ++ ++  P
Sbjct: 662 SRDSKAAVEVFEAMETEGVRPGVRSYTSLLKAISEENTLRTRALQRTRMLETRRSP 717


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 151/363 (41%), Gaps = 50/363 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L+  + ++G+   A+ L   M   G +P+   Y  ++       D   AL       
Sbjct: 185 FTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSAL----NLL 240

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KM+ +    PN+V YN ++    +       + LF E+ E  + PDI TYN +++ +  
Sbjct: 241 RKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCI 300

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G   + E +L  M   +  PD++TF+ LI+++ K   F + E+++  ++     P+  T
Sbjct: 301 SGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVT 360

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY----------------- 236
           ++SMI  + K      AE++F        +P  IT+  +I  Y                 
Sbjct: 361 YSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMT 420

Query: 237 ----------------GYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
                           G+C   +++ A+++  E+   G    V T N +L+  C NG   
Sbjct: 421 EAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLK 480

Query: 279 EADLLFENSHNM-----------GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +A  +F+                GV PD  TY +L             ++L + M   GI
Sbjct: 481 DALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGI 540

Query: 328 VPN 330
           VP+
Sbjct: 541 VPD 543



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 151/343 (44%), Gaps = 26/343 (7%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R    D   +S LI    K+G+   A  L+ EM      P    Y+++I      +++ 
Sbjct: 316 ERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCK-QNRL 374

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            A A+ + Y    KG   C P+I+T+N L+    +A+ VD    L  E+ E+ L  +  T
Sbjct: 375 DA-AEHMFYLTPTKG---CSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTIT 430

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++  + + G +   + +L  M S+   P+++T N L+D            ++FK++ 
Sbjct: 431 YTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQ 490

Query: 184 HSK-----------EKPTLPTFNSMI---INYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
            SK            +P + T+N +I   IN GK     +AE ++++M      P  ITY
Sbjct: 491 KSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFL---EAEELYEEMPHRGIVPDTITY 547

Query: 230 ECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
             +I   G C    +  A ++FD +        V T N ++  YC  G+  +   LF   
Sbjct: 548 SSMID--GLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEM 605

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              G+  D+ TY  L   + K +  +    + + M  +G+ P+
Sbjct: 606 GQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPD 648



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 139/340 (40%), Gaps = 49/340 (14%)

Query: 29  LAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88
            A+  F ++   G  P    +N L    LH       +++AL  F +M     CKPN+VT
Sbjct: 134 FALSTFGKITKLGFHPTVVTFNTL----LHGLCVEDRISEALDLFHQM-----CKPNVVT 184

Query: 89  YNILLRA-CAQARNVDQVNALFKELHESI------------------------------- 116
           +  L+   C + R V+ V  L + L + +                               
Sbjct: 185 FTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKME 244

Query: 117 ----LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 172
               + P++  YN ++D   K+G   +  ++   M+  +  PDI+T+N +I+ +     +
Sbjct: 245 EVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRW 304

Query: 173 DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 232
              EQ+ + ++  K  P + TF+++I  + K     +AE ++ +M      PS +TY  +
Sbjct: 305 SDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSM 364

Query: 233 ITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
           I   G+C  + +  A  +F      G    + T N ++  YC      +   L       
Sbjct: 365 ID--GFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEA 422

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           G+  ++ TY  L   + +       Q LL+ M  +G+ PN
Sbjct: 423 GLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPN 462



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 146/348 (41%), Gaps = 22/348 (6%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M++    I +  IY+ +I  + K G+   A  LF EM+     PD   YN +I       
Sbjct: 243 MEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFC--- 299

Query: 61  DKAKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
             +   + A    Q+M  +ER   P++VT++ L+ A  +     +   L+ E+    + P
Sbjct: 300 -ISGRWSDAEQLLQEM--LERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIP 356

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
              TY+ ++D + K   +   E +     +  C PDIITFN LI  Y + +  D   ++ 
Sbjct: 357 STVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLL 416

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
             +  +       T+ ++I  + +      A+ + Q+M +    P+ +T  C   + G C
Sbjct: 417 HEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVT--CNTLLDGLC 474

Query: 240 DN--VSRAREIFDELSKLGKDM-----------KVSTLNAMLEAYCMNGLPTEADLLFEN 286
           DN  +  A E+F  + K   D+            V T N ++      G   EA+ L+E 
Sbjct: 475 DNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEE 534

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
             + G+ PD+ TY  +     K +  +   ++   M      P+   F
Sbjct: 535 MPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTF 582



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 119/308 (38%), Gaps = 47/308 (15%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-------- 56
           R  I  T  YS +I    K+ +   A  +F      GC PD   +N LI  +        
Sbjct: 352 RSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDD 411

Query: 57  ----LHTRDKAKALAKALGY-------------------FQKMKGMERCKPNIVTYNILL 93
               LH   +A  +A  + Y                    Q+M     C PN+VT N LL
Sbjct: 412 GIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVC-PNVVTCNTLL 470

Query: 94  RACAQARNVDQVNALFKELHESIL-----------APDIYTYNGVMDAYGKNGMIKEMES 142
                   +     +FK + +S +            PD+ TYN ++      G   E E 
Sbjct: 471 DGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEE 530

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +   M      PD IT++ +ID   K+   D+  Q+F S+      P + TFN++I  Y 
Sbjct: 531 LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYC 590

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY--CDNVSRAREIFDELSKLGKDMK 260
           KA +      +F +M         ITY  I  +YG+   DN+  A +IF E+   G    
Sbjct: 591 KAGMVDDGLELFCEMGQRGIVADAITY--ITLIYGFRKVDNIDGALDIFQEMISSGVYPD 648

Query: 261 VSTLNAML 268
             T+  ML
Sbjct: 649 TITIRNML 656



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/265 (20%), Positives = 102/265 (38%), Gaps = 52/265 (19%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P +VT+N LL        + +   LF ++ +    P++ T+  +M+   + G + E  ++
Sbjct: 149 PTVVTFNTLLHGLCVEDRISEALDLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVAL 204

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKR-------QAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           L RM  +  +P+ IT+  ++D   K            KME+V      S   P +  +N+
Sbjct: 205 LDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEV------SHIIPNVVIYNT 258

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           +I    K      A  +F +M   +  P  +TY C                         
Sbjct: 259 IIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNC------------------------- 293

Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
                     M+  +C++G  ++A+ L +      + PD  T+  L  A+ K       +
Sbjct: 294 ----------MINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAE 343

Query: 317 KLLKRMEQNGIVPNKRFFLEALETF 341
           +L   M    I+P+   +   ++ F
Sbjct: 344 ELYDEMLPRSIIPSTVTYSSMIDGF 368



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 6/162 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI  +  +G+   A  L+ EM + G  PD   Y+++I        K   L +A
Sbjct: 508 DVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLC----KQSRLDEA 563

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F  M G +   P++VT+N L+    +A  VD    LF E+ +  +  D  TY  ++ 
Sbjct: 564 TQMFDSM-GSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIY 622

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITF-NLLIDSYGKRQ 170
            + K   I     +   M S+   PD IT  N+L   + K +
Sbjct: 623 GFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLWSKEE 664


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 149/323 (46%), Gaps = 11/323 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           ++ ++S L+ V       + A+ +F  M  +G RP       L    L++  K +     
Sbjct: 129 NSHVFSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVL----LNSLAKDRLTDMV 184

Query: 70  LGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              ++KM   G+E    NI  YN+L+ AC ++ +V++ + L  E+    + PD++TYN +
Sbjct: 185 WKVYKKMARIGVE---ANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTL 241

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  Y K GM  E  SV  RM+    KPDI+T+N LI  + K     +  ++FK +  +  
Sbjct: 242 ISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDA-- 299

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P   T+ ++I  Y +     +A  + ++M A    P+ +TY  I+        +  A +
Sbjct: 300 TPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANK 359

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + +E+S+   +    T N ++ AYC  G    A  +       G+  D  TYK L   + 
Sbjct: 360 LLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFC 419

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           K    +  ++LL  M   G  P+
Sbjct: 420 KIREMDGAKELLLSMLDAGFSPS 442



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 150/343 (43%), Gaps = 15/343 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI++  KKG    A+ +   M   G +PD   YN+LI    H   K   + +A
Sbjct: 234 DLFTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLI----HGFCKEGRMREA 289

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +  F++++      PN VTY  L+    +  ++DQ   L +E+    L P + TYN ++ 
Sbjct: 290 MRLFKEIRD---ATPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILR 346

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              + G I++   +L+ M   + +PD +T N LI++Y K        +V   ++ +  K 
Sbjct: 347 KLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKL 406

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRARE 247
              T+ ++I  + K R    A+ +   M    ++PS+ TY  ++   GYC+  N     +
Sbjct: 407 DQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPSYCTYSWLVD--GYCNQQNEEAVLK 464

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + DE  + G  +  S   A++  +C       A  +F      G   DS  Y  L  AY 
Sbjct: 465 LPDEFVRKGLCVDKSLYRALIRRFCKREQVDYAKKIFSLMQEKGTLGDSVIYTSLAYAYW 524

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
           K         LL  M +  ++   + +       ++S AG  S
Sbjct: 525 KLGKANAASDLLDEMYKRRLMITLKIY----RALNASYAGDNS 563



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 97/220 (44%), Gaps = 7/220 (3%)

Query: 112 LHESILAPDI--YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR 169
           LH+    PDI  + ++ ++  Y    M +E   V   M  N  +P +    +L++S  K 
Sbjct: 122 LHDD---PDINSHVFSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKD 178

Query: 170 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
           +  D + +V+K +     +  +  +N +I    K+    KA+ +  +M +    P   TY
Sbjct: 179 RLTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTY 238

Query: 230 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289
             +I++Y        A  + D + + G    + T N+++  +C  G   EA  LF+   +
Sbjct: 239 NTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRD 298

Query: 290 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
              TP+  TY  L   Y + N  +   +L + ME  G+ P
Sbjct: 299 --ATPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYP 336


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 144/317 (45%), Gaps = 6/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS L+   GK+      +WL  EM + G +P+   Y    T  +    +A    +A    
Sbjct: 220 YSVLMLAFGKR-DVETVVWLLREMEDHGVKPNVYSY----TICIRVLGQAGRFEEAYKIL 274

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           QKM+  E CKP++VT  +L++    A  V     +F ++  S   PD  TY  ++D  G 
Sbjct: 275 QKMED-EGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGD 333

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           NG  + +  + + MK++    +++ +  ++D+  +    D+   VF  +     +P   +
Sbjct: 334 NGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYS 393

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +NS+I  + KA     A  +F  M     TP+  TY   I  YG      +A + ++ + 
Sbjct: 394 YNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMK 453

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V   NA+L +   +G    A  +F    ++GV PD+ TY ++ K  +KA+  +
Sbjct: 454 SKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNAD 513

Query: 314 LVQKLLKRMEQNGIVPN 330
              K+   M +   VP+
Sbjct: 514 EAMKVFSEMIETRCVPD 530



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 149/329 (45%), Gaps = 11/329 (3%)

Query: 11   TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
            TG Y+ LI  +  +    +A  LFSEM+  GC PD   YN ++ A      K+  +   L
Sbjct: 776  TGSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDA----MGKSMRIEDML 831

Query: 71   GYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
               ++M  KG E      VTYN ++    +++ + +   L+ +L     +P   TY  ++
Sbjct: 832  KVQKEMHCKGYES---TYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLL 888

Query: 129  DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            D   K+G I++ E +   M    CKP+   +N+L++ Y      +K+ ++F++++     
Sbjct: 889  DGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGIN 948

Query: 189  PTLPTFNSMIINYGKA-RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P + ++  +I     A RL     Y F+++T +   P  ITY  +I   G    +  A  
Sbjct: 949  PDIKSYTVLIGALCTAGRLNDSLSY-FRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVS 1007

Query: 248  IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
            +F+++ K G    + T N+++      G   EA  ++E     G  P+  TY  L   Y+
Sbjct: 1008 LFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYS 1067

Query: 308  KANMKELVQKLLKRMEQNGIVPNKRFFLE 336
             +   +       +M   G  PN   +++
Sbjct: 1068 VSGSTDNAFASYGQMIVGGCPPNSSTYMQ 1096



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 143/353 (40%), Gaps = 42/353 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+  I V+G+ G+   A  +  +M + GC+PD      LI         A  ++ A   F
Sbjct: 254 YTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLI----QILCDAGRVSDAKDVF 309

Query: 74  QKMKGMERCKPNIVTYNILLRACA-----------------------------------Q 98
            KMK  ++ KP+ VTY  LL  C                                    Q
Sbjct: 310 WKMKASDQ-KPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQ 368

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
              VD+ + +F ++ +  + P  Y+YN ++  + K   +     + + M  +   P+  T
Sbjct: 369 VGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYT 428

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           + L I+ YGK     K  + ++ LM SK   P +   N+++ +  K+   G A+ VF ++
Sbjct: 429 YVLFINYYGKSGESLKAIKRYE-LMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHEL 487

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
            ++   P  ITY  +I       N   A ++F E+ +      V  +N++++     G  
Sbjct: 488 KSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRG 547

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            EA  +F     M + P   TY  L     +    + V  LL+ M  N   PN
Sbjct: 548 NEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPN 600



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 124/286 (43%), Gaps = 5/286 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ ++  + + G+   A  +F +M+  G  P    YN+LI+  L    KA  L  AL  F
Sbjct: 359 YTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFL----KADRLNHALELF 414

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             M  +    PN  TY + +    ++    +    ++ +    + PD+   N V+ +  K
Sbjct: 415 NHMN-IHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAK 473

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G +   + V   +KS    PD IT+ ++I    K    D+  +VF  ++ ++  P +  
Sbjct: 474 SGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLA 533

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            NS+I    KA    +A  +F ++  M   P+  TY  ++   G    V     + +E++
Sbjct: 534 VNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMN 593

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
                  + T N +L+  C NG    A  +  N    G  PD S+Y
Sbjct: 594 SNSYPPNLITYNTVLDCLCKNGEVNYALGMLYNMTMKGCMPDLSSY 639



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 143/352 (40%), Gaps = 19/352 (5%)

Query: 8    IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
            + D    S LI  + K  +   A  L  +  + G       YNALI   +        + 
Sbjct: 738  LLDDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLV----DENLID 793

Query: 68   KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
             A G F +MK +  C P+  TYN++L A  ++  ++ +  + KE+H         TYN +
Sbjct: 794  VAEGLFSEMKRL-GCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTI 852

Query: 128  MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
            +    K+ M+ E   +  ++ S    P   T+  L+D   K    +  E +F  ++    
Sbjct: 853  ISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGC 912

Query: 188  KPTLPTFNSMIINYGKARLQGKAEYV---FQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
            KP    +N ++  Y   RL G  E V   FQ M      P   +Y  +I        ++ 
Sbjct: 913  KPNRAIYNILLNGY---RLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLND 969

Query: 245  AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
            +   F +L++LG +  + T N ++     +G   EA  LF +    G+ P+  TY  L  
Sbjct: 970  SLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLIL 1029

Query: 305  AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTD 356
               K        K+ + + +NG  PN   +        ++L G  S S  TD
Sbjct: 1030 YLGKEGKAAEAGKMYEELLKNGWKPNVFTY--------NALIGGYSVSGSTD 1073



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 85/396 (21%), Positives = 153/396 (38%), Gaps = 75/396 (18%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           + K +  + D    + ++  + K G+  +A  +F E+++ G  PD   Y  +I       
Sbjct: 451 LMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCC---- 506

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            KA    +A+  F +M    RC P+++  N L+    +A   ++   +F EL E  L P 
Sbjct: 507 SKASNADEAMKVFSEMI-ETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPT 565

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF-------- 172
             TYN ++   G+ G +KE+  +L  M SN   P++IT+N ++D   K            
Sbjct: 566 DCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEVNYALGMLY 625

Query: 173 ------------------------DKMEQVFKSLMHSKE--KPTLPTFNSMIINYGKARL 206
                                   D++ + F+     K+   P   T  +++ ++ K  L
Sbjct: 626 NMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQMKKVLAPDYTTLCTILPSFVKNGL 685

Query: 207 QGKA-----EYVFQKMTAMKYTPSFITYECIITMYG------YCDNVSRAREIFDE---- 251
             +A     EY+ Q  +    +      E I+   G      + +N++ +R + D+    
Sbjct: 686 MNEALHTLKEYILQPGSKADRSSFHSLMEGILKRAGMEKSIEFAENIALSRILLDDFFLS 745

Query: 252 ---------------------LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
                                   LG  +K  + NA++       L   A+ LF     +
Sbjct: 746 PLIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRL 805

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           G  PD  TY L+  A  K+   E + K+ K M   G
Sbjct: 806 GCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKG 841



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 140/327 (42%), Gaps = 7/327 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI+   K  +   A+ LF+ M   G  P+   Y   I  +  + +  KA+ +     
Sbjct: 394 YNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRY--EL 451

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K KG+    P++V  N +L + A++  +     +F EL    + PD  TY  ++    K
Sbjct: 452 MKSKGI---VPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSK 508

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
                E   V S M   +C PD++  N LID+  K    ++  ++F  L      PT  T
Sbjct: 509 ASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCT 568

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N+++   G+     +  ++ ++M +  Y P+ ITY  ++        V+ A  +   ++
Sbjct: 569 YNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEVNYALGMLYNMT 628

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN-MK 312
             G    +S+ N  L         TEA  +F     + + PD +T   +  ++ K   M 
Sbjct: 629 MKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQMKKV-LAPDYTTLCTILPSFVKNGLMN 687

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALE 339
           E +  L + + Q G   ++  F   +E
Sbjct: 688 EALHTLKEYILQPGSKADRSSFHSLME 714



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 135/340 (39%), Gaps = 16/340 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLHTRDKAKALA 67
           D   Y  L+   G  G +R  + +++ M+  G   +   Y A++ A   +   D+A  + 
Sbjct: 320 DRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVF 379

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
             +    K KG+E   P   +YN L+    +A  ++    LF  ++     P+ YTY   
Sbjct: 380 DQM----KQKGIE---PQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLF 432

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++ YGK+G   +       MKS    PD++  N ++ S  K       ++VF  L     
Sbjct: 433 INYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGV 492

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            P   T+  MI    KA    +A  VF +M   +  P  +    +I         + A +
Sbjct: 493 CPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWK 552

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           IF EL ++  D    T N +L      G   E   L E  ++    P+  TY  +     
Sbjct: 553 IFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLC 612

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
           K         +L  M   G +P+       L +++++L G
Sbjct: 613 KNGEVNYALGMLYNMTMKGCMPD-------LSSYNTALHG 645



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 124/316 (39%), Gaps = 48/316 (15%)

Query: 52  LITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE 111
           L+ AH   RD A+        F  M+  +  K N+ T+  + R+      +         
Sbjct: 121 LMRAHGRVRDMAQV-------FDLMQ-RQIVKANVGTFLTIFRSLGMEGGLRSAPVALPM 172

Query: 112 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171
           + E+ +  + YTYNG++    K+G  +E   V   M ++   P + T+++L+ ++GKR  
Sbjct: 173 MKEAGIVLNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLAFGKRDV 232

Query: 172 ----------------------------------FDKMEQVFKSLMHSKEKPTLPTFNSM 197
                                             F++  ++ + +     KP + T   +
Sbjct: 233 ETVVWLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVL 292

Query: 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR---EIFDELSK 254
           I     A     A+ VF KM A    P  +TY   IT+   C +   +R   EI++ +  
Sbjct: 293 IQILCDAGRVSDAKDVFWKMKASDQKPDRVTY---ITLLDKCGDNGDSRSVIEIWNAMKA 349

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
            G +  V    A+++A C  G   EA  +F+     G+ P   +Y  L   + KA+    
Sbjct: 350 DGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNH 409

Query: 315 VQKLLKRMEQNGIVPN 330
             +L   M  +G  PN
Sbjct: 410 ALELFNHMNIHGPTPN 425


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 144/327 (44%), Gaps = 21/327 (6%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    K G  + A   F EM + GC P+   Y ALI A+L    KAK +  A   F
Sbjct: 498 YTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYL----KAKQMPVADELF 553

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQ----------------VNALFKELHESIL 117
           + M  +E CKPN+VTY  L+    +A  +++                ++  FK  H +  
Sbjct: 554 EMML-LEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCE 612

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
            P++ TY  ++D   K   +KE   +L  M ++ C+P+ I ++ +ID + K       ++
Sbjct: 613 GPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQE 672

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           VF  +      P L T++S I    K         V  KM     TP+ + Y  ++    
Sbjct: 673 VFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLC 732

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
                  A ++  ++ + G +  V T  AM++ +  +G   +   LF +  + G  P+  
Sbjct: 733 KIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFI 792

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQ 324
           TY++L        + +   KLL  M+Q
Sbjct: 793 TYRVLINHCCSNGLLDEAYKLLDEMKQ 819



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 151/345 (43%), Gaps = 31/345 (8%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           ++ D   YSK+I  +    +   A  LF EM+ +G  P    Y  LI +      KA  +
Sbjct: 456 FVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFC----KAGLI 511

Query: 67  AKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            +A  +F +M  KG   C PN+VTY  L+ A  +A+ +   + LF+ +      P++ TY
Sbjct: 512 QQARKWFDEMLHKG---CTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTY 568

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKS---------------NQCK-PDIITFNLLIDSYGK 168
             ++D + K G I++   + +RM+                N C+ P++IT+  L+D   K
Sbjct: 569 TALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCK 628

Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
                +  ++  +++    +P    ++++I  + K      A+ VF KM+   Y+P+  T
Sbjct: 629 ANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYT 688

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDM---KVSTLNAMLEAYCMNGLPTEADLLFE 285
           Y   I    + DN  R   +   LSK+ ++     V     M++  C  G   EA  L  
Sbjct: 689 YSSFIDCL-FKDN--RLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLML 745

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                G  P+  TY  +   + K+   E   +L + M   G  PN
Sbjct: 746 KMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPN 790



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 160/381 (41%), Gaps = 56/381 (14%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA----------------- 55
           I++ LI    K      A  LF +M   GC+P   VYN  I +                 
Sbjct: 351 IFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVE 410

Query: 56  --------------HLHTRDKAKALAKALGYFQKMKGMERCK-------PNIVTYNILLR 94
                          ++  + A+ L  A  + Q  K +  C+       P+  TY+ ++ 
Sbjct: 411 KAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKII--CEMMGKGFVPDDSTYSKVIG 468

Query: 95  ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
               A  V++  +LF+E+  + + P +YTY  ++D++ K G+I++       M    C P
Sbjct: 469 FLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTP 528

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           +++T+  LI +Y K +     +++F+ ++    KP + T+ ++I  + KA    KA  ++
Sbjct: 529 NVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIY 588

Query: 215 QKMTA-------MKY---------TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 258
            +M          KY          P+ ITY  ++      + V  A E+ D +   G +
Sbjct: 589 ARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCE 648

Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
                 +A+++ +C  G   +A  +F      G +P+  TY        K N  +LV K+
Sbjct: 649 PNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKV 708

Query: 319 LKRMEQNGIVPNKRFFLEALE 339
           L +M +N   PN   + E ++
Sbjct: 709 LSKMLENSCTPNVVIYTEMVD 729



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 173/408 (42%), Gaps = 76/408 (18%)

Query: 2   QKQRWY--------IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI 53
           Q ++W+          +   Y+ LI    K  Q  +A  LF  M   GC+P+   Y ALI
Sbjct: 513 QARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALI 572

Query: 54  TAHLHTRDKAKALAKALGYFQKMKG------MER--------CK-PNIVTYNILLRACAQ 98
             H     KA  + KA   + +M+G      M++        C+ PN++TY  L+    +
Sbjct: 573 DGHC----KAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCK 628

Query: 99  ARNVDQVNAL-----------------------------------FKELHESILAPDIYT 123
           A  V + + L                                   F ++ E   +P++YT
Sbjct: 629 ANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYT 688

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+  +D   K+  +  +  VLS+M  N C P+++ +  ++D   K     K ++ +K ++
Sbjct: 689 YSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCK---IGKTDEAYKLML 745

Query: 184 HSKEK---PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
             +EK   P + T+ +MI  +GK+    +   +F+ M +    P+FITY  +I     C 
Sbjct: 746 KMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHC--CS 803

Query: 241 N--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
           N  +  A ++ DE+ +      + +   ++E +    + T   LL E S N  V P  S 
Sbjct: 804 NGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGFSQEFI-TSIGLLDELSENESV-PVDSL 861

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQ--NGIVPNKRFFLEALETFSSS 344
           Y++L   Y KA   E+   LL+ +    +  V NK  +   +E  S +
Sbjct: 862 YRILIDNYIKAGRLEVALDLLEEISSSPSHAVSNKYLYASLIENLSHA 909



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/375 (22%), Positives = 147/375 (39%), Gaps = 65/375 (17%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I +   Y  L++   +KGQ      + S M   GC P+  ++N+LI A+  +RD + A  
Sbjct: 311 IPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYK 370

Query: 68  KALGYFQKMKGMERCKPNIVTYNILL---------------------------------- 93
                F+KM     C+P  + YNI +                                  
Sbjct: 371 ----LFKKMIKCG-CQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNK 425

Query: 94  -------RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 146
                  R    A   DQ   +  E+      PD  TY+ V+        +++  S+   
Sbjct: 426 VNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEE 485

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           MK N   P + T+ +LIDS+ K     +  + F  ++H    P + T+ ++I  Y KA+ 
Sbjct: 486 MKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQ 545

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
              A+ +F+ M      P+ +TY  +I  +     + +A +I+   +++  D++ S +  
Sbjct: 546 MPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIY---ARMRGDIESSDM-- 600

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
                         D  F+  HN    P+  TY  L     KAN  +   +LL  M  +G
Sbjct: 601 --------------DKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHG 646

Query: 327 IVPNKRFFLEALETF 341
             PN+  +   ++ F
Sbjct: 647 CEPNQIVYDAVIDGF 661



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 141/338 (41%), Gaps = 21/338 (6%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALGYFQ 74
           L+    + G   +A+     +++ G +P  + YNALI   L     D A  + + +  + 
Sbjct: 182 LVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYA 241

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
            +  M+R   +   Y++      +     +   L  E  +    PD   YN ++    + 
Sbjct: 242 FV--MDRYTLSCFAYSL-----CKGGKCREAFDLIDEAED--FVPDTVFYNRMVSGLCEA 292

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
            + +E   +L RM+S+ C P+++T+ +L+    ++    + +++   ++     P    F
Sbjct: 293 SLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIF 352

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR-AREIFD--- 250
           NS+I  Y K+R    A  +F+KM      P ++ Y   I     C N  + + +I D   
Sbjct: 353 NSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIG--SVCSNEEQPSSDILDLVE 410

Query: 251 ----ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
               E+  LG  +    ++      C  G   +A  +       G  PD STY  +    
Sbjct: 411 KAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFL 470

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             A+  E    L + M++NGIVP+   +   +++F  +
Sbjct: 471 CDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKA 508



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 135/328 (41%), Gaps = 23/328 (7%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           ++ DT  Y+++++ + +      AM +   MR+S C P+   Y  L++  L         
Sbjct: 275 FVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRK------- 327

Query: 67  AKALGYFQKMKGM---ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
              LG  +++  M   E C PN   +N L+ A  ++R+      LFK++ +    P    
Sbjct: 328 -GQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLV 386

Query: 124 YNGVMDAYGKN------GMIKEMESVLSRMKSNQC---KPDIITFNLLIDSYGKRQAFDK 174
           YN  + +   N       ++  +E   S M        K ++  F   +   GK   FD+
Sbjct: 387 YNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGK---FDQ 443

Query: 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
             ++   +M     P   T++ +I     A    KA  +F++M      PS  TY  +I 
Sbjct: 444 AFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILID 503

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
            +     + +AR+ FDE+   G    V T  A++ AY        AD LFE     G  P
Sbjct: 504 SFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKP 563

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRM 322
           +  TY  L   + KA   E   ++  RM
Sbjct: 564 NVVTYTALIDGHCKAGQIEKACQIYARM 591


>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
 gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 323

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 133/292 (45%), Gaps = 11/292 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ L+  +  +G+   A+ L   M   G +P  ++ N L         K      A
Sbjct: 9   DVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGTIINGLC--------KMGDTESA 60

Query: 70  LGYFQKMKGMERCKPNIVTYN-ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           L    KM+     K ++V YN I+ R C    ++   N LF E+H+  + PD+ TY+G++
Sbjct: 61  LNLLSKMEET-HIKAHVVIYNAIIDRLCKDGHHIHAQN-LFTEMHDKGIFPDVITYSGMI 118

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D++ ++G   + E +L  M   Q  PD++TF+ LI++  K     + E+++  ++     
Sbjct: 119 DSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIF 178

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           PT  T+NSMI  + K      A+ +   M +   +P  +T+  +I  Y     V    EI
Sbjct: 179 PTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEI 238

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           F E+ + G      T   ++  +C  G    A  L     + GV P+  T++
Sbjct: 239 FCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQ 290



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 113/243 (46%), Gaps = 7/243 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ +I  + K G    A  LF+EM + G  PD   Y+ +I +      ++     A   
Sbjct: 78  IYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFC----RSGRWTDAEQL 133

Query: 73  FQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            + M  +ER   P++VT++ L+ A  +   V +   ++ ++    + P   TYN ++D +
Sbjct: 134 LRDM--IERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGF 191

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K   + + + +L  M S  C PD++TF+ LI+ Y K +  D   ++F  +         
Sbjct: 192 CKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANT 251

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+ ++I  + +      A+ +   M +    P++IT++ ++        + +A  I ++
Sbjct: 252 VTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILED 311

Query: 252 LSK 254
           L K
Sbjct: 312 LQK 314



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 115/261 (44%), Gaps = 6/261 (2%)

Query: 82  CKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140
           C+P++VT+  L+   C + R V Q  AL   + E    P    Y  +++   K G  +  
Sbjct: 6   CRPDVVTFTTLMNGLCCEGR-VLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESA 60

Query: 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
            ++LS+M+    K  ++ +N +ID   K       + +F  +      P + T++ MI +
Sbjct: 61  LNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDS 120

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
           + ++     AE + + M   +  P  +T+  +I        VS A EI+ ++ + G    
Sbjct: 121 FCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPT 180

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
             T N+M++ +C      +A  + ++  +   +PD  T+  L   Y KA   +   ++  
Sbjct: 181 TITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFC 240

Query: 321 RMEQNGIVPNKRFFLEALETF 341
            M + GIV N   +   +  F
Sbjct: 241 EMHRRGIVANTVTYTTLIHGF 261



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 126/270 (46%), Gaps = 27/270 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT------AHLHTRDKAKALA 67
           Y  +I  + K G T  A+ L S+M  +  +    +YNA+I        H+H ++      
Sbjct: 44  YGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQN------ 97

Query: 68  KALGYFQKM--KGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTY 124
                F +M  KG+    P+++TY+ ++ + C   R  D    L +++ E  + PD+ T+
Sbjct: 98  ----LFTEMHDKGI---FPDVITYSGMIDSFCRSGRWTD-AEQLLRDMIERQINPDVVTF 149

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           + +++A  K G + E E +   M      P  IT+N +ID + K+   +  +++  S+  
Sbjct: 150 SALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMAS 209

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NV 242
               P + TF+++I  Y KA+       +F +M       + +TY  +I  +G+C   ++
Sbjct: 210 KSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLI--HGFCQVGDL 267

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
             A+++ + +   G      T  +ML + C
Sbjct: 268 DAAQDLLNVMISSGVAPNYITFQSMLASLC 297



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 9/188 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R    D   +S LI  + K+G+   A  ++ +M   G  P    YN++I        K 
Sbjct: 139 ERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFC----KQ 194

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             L  A      M   + C P++VT++ L+    +A+ VD    +F E+H   +  +  T
Sbjct: 195 DRLNDAKRMLDSMAS-KSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVT 253

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQVF 179
           Y  ++  + + G +   + +L+ M S+   P+ ITF  ++ S       R+AF  +E + 
Sbjct: 254 YTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQ 313

Query: 180 KSLMHSKE 187
           KS  H  E
Sbjct: 314 KSEGHHLE 321



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 76/195 (38%), Gaps = 4/195 (2%)

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           M    C+PD++TF  L++         +   +   ++    +P    + ++I    K   
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
              A  +  KM         + Y  II       +   A+ +F E+   G    V T + 
Sbjct: 57  TESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSG 116

Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           M++++C +G  T+A+ L  +     + PD  T+  L  A  K       +++   M + G
Sbjct: 117 MIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRG 176

Query: 327 IVPNKRFFLEALETF 341
           I P    +   ++ F
Sbjct: 177 IFPTTITYNSMIDGF 191


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 156/344 (45%), Gaps = 17/344 (4%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           + ++ D   Y  LI  +  +G    A+ LF+E +  G +PD  VYN+L+        K  
Sbjct: 322 KGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLV--------KGL 373

Query: 65  AL-AKALGYFQKMKGM--ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            L    L   Q M  M  E C P+I TYNI++    +  N+     +  +       PD+
Sbjct: 374 CLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDV 433

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           +T+N ++D Y K   +     ++ RM      PD IT+N +++   K    +++ + F+ 
Sbjct: 434 FTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQE 493

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++     P   T+N +I N+ ++    +A  V  KM+     P  +++  +I  YG+C N
Sbjct: 494 MILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLI--YGFCRN 551

Query: 242 --VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             +  A  +F +L + G      T N ++ A+        A+ +F+   + G   DS TY
Sbjct: 552 GDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTY 611

Query: 300 KLLYKAYTK-ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
           ++L     K AN+      L++ M + G +P+   F   + + +
Sbjct: 612 RVLIDGSCKTANVDRAYMHLVE-MIKKGFIPSMSTFGRVINSLT 654



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 150/353 (42%), Gaps = 34/353 (9%)

Query: 6   WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--LHTRDKA 63
           + + D   Y+ LI  + KK   + AM     M N GC PD   YN +I  +  +    +A
Sbjct: 253 YAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEA 312

Query: 64  KALAK----------ALGYFQKMKGM------ERC------------KPNIVTYNILLRA 95
             L K           + Y   + G+      ER             KP+IV YN L++ 
Sbjct: 313 TELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKG 372

Query: 96  -CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
            C Q   +  +  +  E+ E    PDI TYN V++   K G I +   V++        P
Sbjct: 373 LCLQGLILHALQVM-NEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLP 431

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           D+ TFN LID Y KR   D   Q+ + +      P   T+NS++    KA    +    F
Sbjct: 432 DVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETF 491

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           Q+M      P+ ITY  +I  +   + +  A ++  ++S+ G      + N ++  +C N
Sbjct: 492 QEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRN 551

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT-KANMKELVQKLLKRMEQNG 326
           G    A LLF+     G +  + T+  L  A++ K NM  + +K+   M   G
Sbjct: 552 GDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNM-HMAEKIFDEMLSKG 603



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 142/326 (43%), Gaps = 17/326 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL---HTRDKAKAL 66
           D  +Y+ L+  +  +G    A+ + +EM   GC PD   YN +I       +  D    +
Sbjct: 362 DIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVM 421

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             A+     MKG     P++ T+N L+    +   +D    L + + E  +APD  TYN 
Sbjct: 422 NDAI-----MKGY---LPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNS 473

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           V++   K G + E+      M    C P+ IT+N+LI+++ +    ++  +V   +    
Sbjct: 474 VLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEG 533

Query: 187 EKPTLPTFNSMIINYGKAR---LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
             P   +FN++I  YG  R   L+G A  +FQK+    Y+ +  T+  +I  +    N+ 
Sbjct: 534 LHPDAVSFNTLI--YGFCRNGDLEG-AYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMH 590

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A +IFDE+   G      T   +++  C       A +        G  P  ST+  + 
Sbjct: 591 MAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVI 650

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVP 329
            + T  +       ++  M + G+VP
Sbjct: 651 NSLTVNHRVFQAVGIIHIMVKIGVVP 676



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 139/350 (39%), Gaps = 23/350 (6%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  +   G+        +  R+   R  P+  + L  A +    +A  L  A+  F
Sbjct: 20  YCALIRPLASAGRVDAVDAAVASARS---RLSPATIHPLYVASIRAYARAGRLRDAVDAF 76

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M  +  C P    YN ++ A   A   DQ + ++  +  + ++PD++T+   + ++  
Sbjct: 77  ERMD-LFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSF-- 133

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
             +       L  +++   +  +    ++   Y      D   Q+F  ++H+   P L  
Sbjct: 134 -CLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDA-RQLFDQMLHTHVFPNLAA 191

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDE 251
           FN ++    K     +A  +  K+     + +  TY   I + G C+   +  A  + D 
Sbjct: 192 FNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYN--IWIRGLCEAGRLPEAVRLVDG 249

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +        V T N ++   C   +P EA        N G  PD  TY  +   Y K +M
Sbjct: 250 MRAYAVP-DVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISM 308

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRSL 361
            +   +LLK     G VP++        T+ S + G     A+ D+ R+L
Sbjct: 309 VQEATELLKDAVFKGFVPDQ-------VTYCSLINGL---CAEGDVERAL 348



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 132/361 (36%), Gaps = 61/361 (16%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y   I    + G+ R A+  F  M    C P    YNA++           AL  A  +
Sbjct: 55  LYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIM----------DALVDAAYH 104

Query: 73  FQKMKGMER-----CKPNIVTYNILLRA-CAQAR-------------------------- 100
            Q  K   R       P++ T+ I LR+ C  AR                          
Sbjct: 105 DQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGL 164

Query: 101 ----NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
               +      LF ++  + + P++  +N V+ A  K G + E   +L ++       ++
Sbjct: 165 YAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINL 224

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
            T+N+ I    +     +  ++    M +   P + T+N++I    K  +  +A +  ++
Sbjct: 225 FTYNIWIRGLCEAGRLPEAVRLVDG-MRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRR 283

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC--MN 274
           M      P   TY  II   GYC        +  E ++L KD            YC  +N
Sbjct: 284 MMNQGCLPDDFTYNTIID--GYCK-----ISMVQEATELLKDAVFKGFVPDQVTYCSLIN 336

Query: 275 GLPTEADL-----LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           GL  E D+     LF  +   G+ PD   Y  L K      +     +++  M + G  P
Sbjct: 337 GLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHP 396

Query: 330 N 330
           +
Sbjct: 397 D 397


>gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic [Vitis vinifera]
          Length = 701

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 152/323 (47%), Gaps = 8/323 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA-KALG 71
           +Y+  + V  K      A  LF EM   G +PD   ++ +I+       +  +L  KA+ 
Sbjct: 178 LYNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCA-----RVSSLPNKAVE 232

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           +F+KM     C P+ VTY+ ++ A  +A NVD    L+          D  T++ ++  Y
Sbjct: 233 WFEKMPEF-GCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIY 291

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           G +G      +V   MK+   KP+++ +N L+D+ G+ +   + + ++K + ++  +P+ 
Sbjct: 292 GMSGNFDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSW 351

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T+ +++  YG+AR    A  V+++M       S + Y  ++ M         A  IF++
Sbjct: 352 GTYAALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFED 411

Query: 252 LSKLGKDMKVS-TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           +   G  M  S T ++++  Y  +G  +EA+ +       G  P+      L + Y KAN
Sbjct: 412 MKSSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKAN 471

Query: 311 MKELVQKLLKRMEQNGIVPNKRF 333
             + V +   R+ +  I P+ RF
Sbjct: 472 RTDEVVRTFDRLLELDITPDDRF 494



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 145/292 (49%), Gaps = 8/292 (2%)

Query: 43  RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARN 101
           R  PS    L    L    K + L +A   F +M  +ER  KP+ +T++ ++ +CA+  +
Sbjct: 169 RLKPSREVILYNVTLKVFRKCRNLDRAEKLFDEM--LERGVKPDNITFSTII-SCARVSS 225

Query: 102 V-DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
           + ++    F+++ E    PD  TY+ ++DAYG+ G +     +  R ++ + + D +TF+
Sbjct: 226 LPNKAVEWFEKMPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFS 285

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
            LI  YG    FD    V++ +     KP L  +N+++   G+A+   +A+ ++++MT  
Sbjct: 286 TLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNN 345

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN-GLPTE 279
              PS+ TY  ++  YG       A  ++ E+ + G ++ V   N +L A C + G   E
Sbjct: 346 GLQPSWGTYAALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLL-AMCADVGYTEE 404

Query: 280 ADLLFENSHNMG-VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           A  +FE+  + G   PDS T+  L   Y+ +      + +L  M + G  PN
Sbjct: 405 AAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPN 456



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 105/224 (46%), Gaps = 7/224 (3%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           + ++W I D   +S LI + G  G     + ++ EM+  G +P+  +YN L+ A      
Sbjct: 273 RTEKWRI-DPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYNTLLDA----MG 327

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           +AK   +A   +++M      +P+  TY  LLRA  +AR  +    ++KE+ E  L   +
Sbjct: 328 RAKRPWQAKNIYKEMTN-NGLQPSWGTYAALLRAYGRARYAEDALIVYKEMKEKGLELSV 386

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSN-QCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             YN ++      G  +E  ++   MKS+  C PD  TF+ LI  Y       + E +  
Sbjct: 387 VLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLN 446

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 224
           +++ +  +P +    S+I  YGKA    +    F ++  +  TP
Sbjct: 447 AMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLELDITP 490


>gi|449525162|ref|XP_004169587.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g73710-like [Cucumis sativus]
          Length = 1026

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 163/369 (44%), Gaps = 44/369 (11%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T  Y+ LI + GK G+ + A  +F EM  +G   D   +N +I    +T      LA+A 
Sbjct: 321 TSTYNTLIDLYGKAGRLKDAANVFGEMLTTGISMDTITFNTMI----YTCGSHGHLAEAE 376

Query: 71  GYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               KM+  ER   P+  TYNI L   A   N+D     ++ + E  L PD+ T+  ++ 
Sbjct: 377 TLLLKME--ERGLSPDTKTYNIFLSLYANDGNIDGALKCYRRIREVGLFPDVVTHRALLH 434

Query: 130 AYGKNGMIKEMESVLSRMKSNQCK------PDIITFNL---------------------- 161
              +  M++++E+V++ M+ +         P +I   +                      
Sbjct: 435 VLSERNMVEDVENVIAEMEKSHILLDEHSLPRVIKMYINEGLLDRAKILLEKYRLDTELS 494

Query: 162 ------LIDSYGKRQAFDKMEQVF--KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
                 +ID+Y ++  + + E +F  K  +  K K  +  +N MI  YGKA L  KA  +
Sbjct: 495 PRISAAIIDAYAEKGLWFEAESIFLWKRDLAGK-KXDVMEYNVMIKAYGKAELYEKAFLL 553

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           F+ M      P   TY  +I M+   D V  AR +  E+ ++G      T +A++ +Y  
Sbjct: 554 FKSMKNRGTWPDECTYNSLIQMFSGGDLVDEARRLLTEMQRMGFKPTCQTFSAVIASYAR 613

Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
            GL ++A  +++   +  V P+   Y +L   + +    E   K  + ME++GI  N+  
Sbjct: 614 LGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAEIGQAEEALKYFRLMEKSGIAENQIV 673

Query: 334 FLEALETFS 342
               ++ FS
Sbjct: 674 LTSLIKAFS 682



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 117/283 (41%), Gaps = 20/283 (7%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           + +  FQ  K  +   PN++ YNI+LR   QA+  D++   + E+ E+ + P   TY  +
Sbjct: 143 RVIQVFQWFKSQKDYVPNVIHYNIVLRTLGQAQKWDELRLCWNEMAENGVVPTNNTYGML 202

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D YGK G++KE    +  M      PD +T N ++        FD  ++ +K       
Sbjct: 203 IDVYGKVGLVKEALLWIKHMTVRGIFPDEVTMNTVVRVLKDAGEFDSADKFYKDWCRGLV 262

Query: 188 KPTLPTFNSMIINYG----------KARLQGKAEYVFQKMTAMKYTPSF----------I 227
           +      NS + ++G          K     +   +  ++   K +P             
Sbjct: 263 ELNDFDLNSRVEDFGVNSAVEPITPKHFCXTELFRIGTRIPNRKVSPEVDNCVRKPRLTS 322

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           TY  +I +YG    +  A  +F E+   G  M   T N M+     +G   EA+ L    
Sbjct: 323 TYNTLIDLYGKAGRLKDAANVFGEMLTTGISMDTITFNTMIYTCGSHGHLAEAETLLLKM 382

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              G++PD+ TY +    Y      +   K  +R+ + G+ P+
Sbjct: 383 EERGLSPDTKTYNIFLSLYANDGNIDGALKCYRRIREVGLFPD 425



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/260 (19%), Positives = 117/260 (45%), Gaps = 1/260 (0%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           K +++ YN++++A  +A   ++   LFK +      PD  TYN ++  +    ++ E   
Sbjct: 528 KXDVMEYNVMIKAYGKAELYEKAFLLFKSMKNRGTWPDECTYNSLIQMFSGGDLVDEARR 587

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +L+ M+    KP   TF+ +I SY +        +V+  ++H+  +P    +  ++  + 
Sbjct: 588 LLTEMQRMGFKPTCQTFSAVIASYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFA 647

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           +     +A   F+ M       + I    +I  +    ++  AR I++ +  +       
Sbjct: 648 EIGQAEEALKYFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMEDGADTI 707

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
             N+M+  Y   G+ +EA  +FE+    G     S   ++Y  Y    M +   ++ + M
Sbjct: 708 ASNSMINLYADLGMVSEAKQVFEDLRERGYADGVSFATMIY-LYKNIGMLDEAIEVAEEM 766

Query: 323 EQNGIVPNKRFFLEALETFS 342
           +++G++ +   F + +E ++
Sbjct: 767 KESGLLRDATSFRKVIECYA 786



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/351 (19%), Positives = 141/351 (40%), Gaps = 60/351 (17%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           + Q+ Y+ +   Y+ ++  +G+  +       ++EM  +G  P  + Y  LI  +     
Sbjct: 152 KSQKDYVPNVIHYNIVLRTLGQAQKWDELRLCWNEMAENGVVPTNNTYGMLIDVY----G 207

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           K   + +AL + + M  +    P+ VT N ++R    A   D  +  +K+    ++  + 
Sbjct: 208 KVGLVKEALLWIKHMT-VRGIFPDEVTMNTVVRVLKDAGEFDSADKFYKDWCRGLVELND 266

Query: 122 YTYNGVMDAYGKNGMIK----------EMESVLSRMKSNQCKPDI----------ITFNL 161
           +  N  ++ +G N  ++          E+  + +R+ + +  P++           T+N 
Sbjct: 267 FDLNSRVEDFGVNSAVEPITPKHFCXTELFRIGTRIPNRKVSPEVDNCVRKPRLTSTYNT 326

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           LID YGK         VF  ++ +       TFN+MI   G      +AE +  KM    
Sbjct: 327 LIDLYGKAGRLKDAANVFGEMLTTGISMDTITFNTMIYTCGSHGHLAEAETLLLKMEERG 386

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
            +P   TY   +++Y    N+  A + +  + ++G                         
Sbjct: 387 LSPDTKTYNIFLSLYANDGNIDGALKCYRRIREVG------------------------- 421

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
            LF         PD  T++ L    ++ NM E V+ ++  ME++ I+ ++ 
Sbjct: 422 -LF---------PDVVTHRALLHVLSERNMVEDVENVIAEMEKSHILLDEH 462



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/296 (19%), Positives = 123/296 (41%), Gaps = 6/296 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I   GK      A  LF  M+N G  PD   YN+LI       D      + L   
Sbjct: 534 YNVMIKAYGKAELYEKAFLLFKSMKNRGTWPDECTYNSLIQM-FSGGDLVDEARRLLTEM 592

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           Q+M      KP   T++ ++ + A+   +     ++  +  + + P+   Y  +++ + +
Sbjct: 593 QRMG----FKPTCQTFSAVIASYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAE 648

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G  +E       M+ +    + I    LI ++ K  + +   +++  + + ++      
Sbjct: 649 IGQAEEALKYFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMEDGADTIA 708

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            NSMI  Y    +  +A+ VF+ +    Y    +++  +I +Y     +  A E+ +E+ 
Sbjct: 709 SNSMINLYADLGMVSEAKQVFEDLRERGYADG-VSFATMIYLYKNIGMLDEAIEVAEEMK 767

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           + G     ++   ++E Y +NG   E   L        + PD+ T+ +L+    K 
Sbjct: 768 ESGLLRDATSFRKVIECYAINGQVRECGELLHEMVTRKLLPDNRTFNVLFTILKKG 823



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 113/308 (36%), Gaps = 74/308 (24%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y  L+    + GQ   A+  F  M  SG   +  V  +LI A      K  +L  A   
Sbjct: 638 LYGVLVNGFAEIGQAEEALKYFRLMEKSGIAENQIVLTSLIKAF----SKVGSLEDARRI 693

Query: 73  FQKMKGMERCKPNIVTYNIL-----LRACAQARNV------------------------- 102
           + +MK ME     I + +++     L   ++A+ V                         
Sbjct: 694 YNRMKNMEDGADTIASNSMINLYADLGMVSEAKQVFEDLRERGYADGVSFATMIYLYKNI 753

Query: 103 ---DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
              D+   + +E+ ES L  D  ++  V++ Y  NG ++E   +L  M + +  PD  TF
Sbjct: 754 GMLDEAIEVAEEMKESGLLRDATSFRKVIECYAINGQVRECGELLHEMVTRKLLPDNRTF 813

Query: 160 NLLIDSYGK----------------------RQAFDKMEQVFKSL-MHSKEKPTLPTF-- 194
           N+L     K                      RQA   +  VF  L +H+    +  TF  
Sbjct: 814 NVLFTILKKGVIPLEAVSQLESAFHEEKTYARQAI--IAAVFSGLGLHASALESCDTFLK 871

Query: 195 ----------NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
                     N  I  YG A    KA  +F KM      P  +TY  ++  YG    +  
Sbjct: 872 AEVQLDSFAYNVAIYAYGAAEKIDKALNIFMKMKDQNLKPDLVTYINLVGCYGKAGMIEG 931

Query: 245 AREIFDEL 252
            ++I+ +L
Sbjct: 932 VKQIYSQL 939



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 82/204 (40%), Gaps = 28/204 (13%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+   + D   + K+I      GQ R    L  EM      PD   +N L T        
Sbjct: 767 KESGLLRDATSFRKVIECYAINGQVRECGELLHEMVTRKLLPDNRTFNVLFTILKKGVIP 826

Query: 63  AKALAKALGYFQKMK--------------------GMERCKP--------NIVTYNILLR 94
            +A+++    F + K                     +E C          +   YN+ + 
Sbjct: 827 LEAVSQLESAFHEEKTYARQAIIAAVFSGLGLHASALESCDTFLKAEVQLDSFAYNVAIY 886

Query: 95  ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
           A   A  +D+   +F ++ +  L PD+ TY  ++  YGK GMI+ ++ + S++K  + + 
Sbjct: 887 AYGAAEKIDKALNIFMKMKDQNLKPDLVTYINLVGCYGKAGMIEGVKQIYSQLKYGEIEL 946

Query: 155 DIITFNLLIDSYGKRQAFDKMEQV 178
           +   F  +I+++     +D ++ V
Sbjct: 947 NKSLFFAIINTFRSADRYDLVQMV 970


>gi|410110061|gb|AFV61110.1| pentatricopeptide repeat-containing protein 123, partial
           [Acantholippia seriphioides]
          Length = 416

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 154/327 (47%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 3   RQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 62

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +  +L  E+  S + P+  
Sbjct: 63  SKAIS----IFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTA 117

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +
Sbjct: 118 SYSTLLTMYVENKKFLEALSVFSEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 177

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  +I +YG     
Sbjct: 178 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEH 237

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + GV  D   ++ +
Sbjct: 238 EKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTM 297

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  +++   +P
Sbjct: 298 IVAYERAGLVAHAKRLLHELKRPDNIP 324



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 140/299 (46%), Gaps = 5/299 (1%)

Query: 36  EMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95
           EMR     PD   Y+ LIT H     K      AL + QKM+  +R   ++V Y+ L+  
Sbjct: 1   EMRQRALSPDRYTYSTLIT-HF---GKEGLFDAALSWLQKME-QDRVPGDLVLYSNLIEL 55

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
             +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  S++S MK +   P+
Sbjct: 56  SRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPN 115

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
             +++ L+  Y + + F +   VF  +   K    L T N MI  YG+  +  +A+ +F 
Sbjct: 116 TASYSTLLTMYVENKKFLEALSVFSEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKLFW 175

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T N+M+  Y    
Sbjct: 176 GMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTL 235

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
              +A+ L +   + G+ P+S TY  +   + K    +    L +++  +G+  ++  F
Sbjct: 236 EHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILF 294



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 140/340 (41%), Gaps = 42/340 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEM+ SG  P+ + Y+ L+T ++     
Sbjct: 73  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTASYSTLLTMYVEN--- 129

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 130 -KKFLEALSVFSEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 188

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN ++  YGK    ++  +++  M+
Sbjct: 189 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQ 248

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           S   +P+ IT++ +I  +GK    D+   +F+ L  S  +     F +MI+ Y +A L  
Sbjct: 249 SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVA 308

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++      P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 309 HAKRLLHELK----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMI 364

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
                         +F+    +G  PDS    L+  AY K
Sbjct: 365 HLLSKYKKYANVVEVFDKMRGLGYFPDSDVIALVLNAYGK 404



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 109/264 (41%), Gaps = 36/264 (13%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           +I V G+ G  + A  LF  MR  G  P+   YN L+  +      A+   +A+  F+ M
Sbjct: 157 MIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY----GDAELFGEAIHLFRLM 212

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +  +  + N+VTYN ++    +    ++ N L +E+    + P+  TY+ ++  +GK G 
Sbjct: 213 Q-RKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGK 271

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSY--------GKRQAFD--------------- 173
           +     +  +++S+  + D I F  +I +Y         KR   +               
Sbjct: 272 LDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHI 331

Query: 174 -----KMEQ---VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
                ++E+   VF+  + + E   +  F  MI    K +       VF KM  + Y P 
Sbjct: 332 LAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPD 391

Query: 226 FITYECIITMYGYCDNVSRAREIF 249
                 ++  YG      +A +++
Sbjct: 392 SDVIALVLNAYGKLHEFDKANDVY 415



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I++ GK G+   A  LF ++R+SG   D  ++  +I A+    ++A  +A A    
Sbjct: 259 YSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY----ERAGLVAHAKRLL 314

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++K     +P+ +  +  +   A A  +++   +F++  ++    DI  +  ++    K
Sbjct: 315 HELK-----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSK 369

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
                 +  V  +M+     PD     L++++YGK   FDK   V+
Sbjct: 370 YKKYANVVEVFDKMRGLGYFPDSDVIALVLNAYGKLHEFDKANDVY 415


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 120/258 (46%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P I TYNIL+    +    +   A+F  L  + L PD+ +YN ++D + K G + +   +
Sbjct: 120 PTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYEL 179

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
             +M      PD++T+N LID   K +   K E+V + ++ +  +P   T+NS+I  Y  
Sbjct: 180 FYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYST 239

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
           A +  ++  VF++M++    P  +     I      + +  A++IFD +   G    + +
Sbjct: 240 AGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIIS 299

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            + +L  Y   G     + L     + G+ P+   + +L  AY +  M +    + + M+
Sbjct: 300 YSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQ 359

Query: 324 QNGIVPNKRFFLEALETF 341
             G++P+   F   + + 
Sbjct: 360 NKGMIPDTVTFATVISSL 377



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 104/226 (46%), Gaps = 8/226 (3%)

Query: 113 HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 172
           H +  AP IYTYN ++D Y +    +   +V  R+      PD+ ++N LID + K    
Sbjct: 114 HAAADAPTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEV 173

Query: 173 DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 232
           DK  ++F  ++     P + T+NS+I    K +   K+E V ++M      P+  TY  +
Sbjct: 174 DKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSL 233

Query: 233 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV 292
           I  Y        +  +F E+S  G    V   N+ + A C +    EA  +F++    G 
Sbjct: 234 IYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGP 293

Query: 293 TPDSSTYKLLYKAYTK----ANMKELVQKLLKRMEQNGIVPNKRFF 334
            P+  +Y  L   Y      ANM  LV  ++ +    GIVPN RFF
Sbjct: 294 KPNIISYSTLLHGYAAEGCFANMNSLVNLMVSK----GIVPNHRFF 335



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 143/334 (42%), Gaps = 8/334 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + +  I DT  ++ +I+ + + G+   A+  F+ M + G  P  +VY  LI    +  + 
Sbjct: 359 QNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGE- 417

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L KA     +M   +   P +  ++ ++    +   V +   +   + ++   P++ 
Sbjct: 418 ---LVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVV 474

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           T+N +M+ Y   G ++E  ++L  M S   +P+   +  L+D Y K    D    VF+ +
Sbjct: 475 TFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDM 534

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN- 241
           +H   KPT   +N ++    +AR    A+ +F +M     T S  TY   + + G C N 
Sbjct: 535 LHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQTYG--VVLGGLCRNN 592

Query: 242 -VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
               A  + ++L  +     + T N ++ A    G   EA  LF      G+ P   TY 
Sbjct: 593 CTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYN 652

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           L+     K    E    L   +E++G  P+ R  
Sbjct: 653 LMISNLIKEESYEEADNLFISVEKSGRAPDSRLL 686



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 138/318 (43%), Gaps = 9/318 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    +  +  LA+ +F  +  +G  PD   YN LI        K   + KA   F
Sbjct: 125 YNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGF----SKEGEVDKAYELF 180

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            KM   +   P++VTYN L+    + + + +   + +++ ++ + P+  TYN ++  Y  
Sbjct: 181 YKMIE-QSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYST 239

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            GM KE   V   M S+   P ++  N  I +  +     + + +F S++    KP + +
Sbjct: 240 AGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIIS 299

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +++++  Y           +   M +    P+   +  +I  Y  C  + +A  IF+++ 
Sbjct: 300 YSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQ 359

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G      T   ++ + C  G   +A   F +  ++GV P  + Y+ L +     N  E
Sbjct: 360 NKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGC--CNHGE 417

Query: 314 LV--QKLLKRMEQNGIVP 329
           LV  ++L+  M    I P
Sbjct: 418 LVKAKELISEMMNKDIPP 435



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/363 (20%), Positives = 145/363 (39%), Gaps = 45/363 (12%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI  + K  +   +  +  +M ++G RP+   YN+LI  +      A    ++
Sbjct: 191 DVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGY----STAGMWKES 246

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +  F++M       P +V  N  + A  +   + +   +F  +      P+I +Y+ ++ 
Sbjct: 247 VRVFKEMSS-SGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLH 305

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y   G    M S+++ M S    P+   FN+LI++Y +    DK   +F+ + +    P
Sbjct: 306 GYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIP 365

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN-------- 241
              TF ++I +  +      A + F  M  +   PS   Y C+I   G C++        
Sbjct: 366 DTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQ--GCCNHGELVKAKE 423

Query: 242 ------------------------------VSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
                                         V+  ++I D + + G+   V T N+++E Y
Sbjct: 424 LISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGY 483

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           C+ G   EA  L +   ++G+ P+   Y  L   Y K    +    + + M   G+ P  
Sbjct: 484 CLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTS 543

Query: 332 RFF 334
             +
Sbjct: 544 VLY 546



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 136/334 (40%), Gaps = 8/334 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI    K+G+   A  LF +M      PD   YN+LI        K K + K+
Sbjct: 156 DVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLC----KTKEMVKS 211

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               ++M      +PN  TYN L+   + A    +   +FKE+  S L P +   N  + 
Sbjct: 212 ERVLEQMVD-AGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIH 270

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A  ++  IKE + +   M     KP+II+++ L+  Y     F  M  +   ++     P
Sbjct: 271 ALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVP 330

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               FN +I  Y +  +  KA  +F+ M      P  +T+  +I+       +  A   F
Sbjct: 331 NHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKF 390

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY--KLLYKAYT 307
           + +  +G     +    +++  C +G   +A  L     N  + P    Y   ++   + 
Sbjct: 391 NHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFK 450

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           +  + E  + ++  M Q G  PN   F   +E +
Sbjct: 451 EGRVAE-GKDIMDLMVQTGQRPNVVTFNSLMEGY 483



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 149/363 (41%), Gaps = 51/363 (14%)

Query: 8   IADTGI------YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           + D GI      Y+ LI      G  + ++ +F EM +SG  P   V N    + +H   
Sbjct: 218 MVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIP--CVVNC--NSFIHALC 273

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           +   + +A   F  M  ++  KPNI++Y+ LL   A       +N+L   +    + P+ 
Sbjct: 274 RHNRIKEAKDIFDSMV-LKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNH 332

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM------ 175
             +N +++AY + GM+ +   +   M++    PD +TF  +I S  +    D        
Sbjct: 333 RFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNH 392

Query: 176 ---------EQVFKSLMH----------SKE-----------KPTLPTFNSMIINYGKAR 205
                    E V++ L+           +KE            P +  F+S+I N  K  
Sbjct: 393 MVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEG 452

Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVST 263
              + + +   M      P+ +T+  +  M GYC   N+  A  + D ++ +G +     
Sbjct: 453 RVAEGKDIMDLMVQTGQRPNVVTFNSL--MEGYCLVGNMEEAFALLDAMASIGIEPNCYI 510

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
              +++ YC NG   +A  +F +  + GV P S  Y ++     +A      +K+   M 
Sbjct: 511 YGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMI 570

Query: 324 QNG 326
           ++G
Sbjct: 571 ESG 573



 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 4/123 (3%)

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
           P+  TY  +I  Y        A  +F  L + G    V + N +++ +   G   +A  L
Sbjct: 120 PTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYEL 179

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELV--QKLLKRMEQNGIVPNKRFFLEALETF 341
           F       V+PD  TY  L     K   KE+V  +++L++M   GI PN + +   +  +
Sbjct: 180 FYKMIEQSVSPDVVTYNSLIDGLCKT--KEMVKSERVLEQMVDAGIRPNNKTYNSLIYGY 237

Query: 342 SSS 344
           S++
Sbjct: 238 STA 240


>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 140/327 (42%), Gaps = 5/327 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ LI    + G    A  +FS M + G   +  +Y  +I        K          
Sbjct: 144 IYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFE----L 199

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           +QKMK +    PN+ TYN L+    +   +     +F E+ +  +A +  TYN ++    
Sbjct: 200 YQKMK-LVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLC 258

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + G + + E +L RMK     P   TFN+L+D        DK     + L      PTL 
Sbjct: 259 RKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLV 318

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N +I  + K         + ++M     +PS +TY  ++  +   D++ +A E+F  +
Sbjct: 319 TYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLM 378

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            ++G      T   ++   C+ G   EA  L+++   M + P+   Y  +   Y K    
Sbjct: 379 KRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNS 438

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALE 339
               K L+ M +NG+ PN   ++  ++
Sbjct: 439 YKALKFLEEMVKNGVTPNVASYISTIQ 465



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 133/285 (46%), Gaps = 6/285 (2%)

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           K+  L +  G+F +  G  R + ++ ++ I ++A  +  NV +   L  ++    ++P++
Sbjct: 85  KSGNLDRTWGFFTEYLG--RTQFDVYSFWITIKAFCENGNVSKGFELLAQMETMGVSPNV 142

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           + Y  +++A  +NG I + + + SRM       +   + ++I+ + K+       ++++ 
Sbjct: 143 FIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQK 202

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC-- 239
           +      P L T+NS+I  Y +      A  VF +++      + +TY  +I   G C  
Sbjct: 203 MKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIG--GLCRK 260

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             VS+A  + + + +   +    T N +++  C  G   +A    E    +G+ P   TY
Sbjct: 261 GQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTY 320

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            +L   ++K     +V +L++ ME  GI P+K  +   + TF  S
Sbjct: 321 NILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRS 365


>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 137/308 (44%), Gaps = 12/308 (3%)

Query: 31  MW-LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           MW L++ M +    P    YN L+ A     D  +A  K+L      KG+E   P +V Y
Sbjct: 170 MWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRA--KSLISEMVKKGIE---PTVVIY 224

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
             L+        + +  ++F+++ +S + P++YTYN +MD Y K   +K+   +   M  
Sbjct: 225 TTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLD 284

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
           +  +P+++TF +LID+  K +      + F  +      P +  FNS+I  Y KA    +
Sbjct: 285 DGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSE 344

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  +  +M   K +P   TY  +I        V  A +I   + K G        N++++
Sbjct: 345 ATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLID 404

Query: 270 AYCMNG------LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            YC  G         +A   F +    G+ PD+  Y ++ + +  A     V  L   M 
Sbjct: 405 GYCKEGNMEKALEIFKATKFFSDMRRNGLRPDALAYAVMLQGHLNAKHMADVMMLHADMI 464

Query: 324 QNGIVPNK 331
           + GIVPN+
Sbjct: 465 KMGIVPNE 472



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 135/298 (45%), Gaps = 12/298 (4%)

Query: 34  FSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 93
            S++R  G + +PSV+  LI A      +   + +AL  + K+       P +   N LL
Sbjct: 109 LSQLR--GSKFNPSVFGVLIIAF----SEVGLVDEALRVYLKVGAF----PAVQACNALL 158

Query: 94  RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
               +  + D +  L+  +    L P + TYN ++DA  + G +   +S++S M     +
Sbjct: 159 NGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIE 218

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
           P ++ +  LI          + E +F+ +  S   P L T+N ++  Y K     +A ++
Sbjct: 219 PTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHL 278

Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
           +Q M      P+ +T+  +I        +  AR  F +++K G    V   N++++ Y  
Sbjct: 279 YQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSK 338

Query: 274 NGLPTEA-DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            G  +EA DLL E      ++PD  TY +L K   +    E    +LKRME+ G+  N
Sbjct: 339 AGNCSEATDLLLE-MEKFKISPDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPAN 395



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 105/214 (49%), Gaps = 16/214 (7%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ LI  +  + +   A  +F +M++SG  P+   YN L+  +  T +    + +AL  
Sbjct: 223 IYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTAN----VKQALHL 278

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           +Q M   +  +PN+VT+ IL+ A  + R +      F ++ +  + P++  +N ++D Y 
Sbjct: 279 YQGMLD-DGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYS 337

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G   E   +L  M+  +  PD+ T+++LI +  +    ++ + + K +    EK  +P
Sbjct: 338 KAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRM----EKEGVP 393

Query: 193 ----TFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
                +NS+I  Y K   +G  E   +   A K+
Sbjct: 394 ANSVVYNSLIDGYCK---EGNMEKALEIFKATKF 424



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 124/269 (46%), Gaps = 15/269 (5%)

Query: 92  LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD-AYGKNGMIKEMESVLSRMKSN 150
           LL++C   R    V     +L  S   P ++   GV+  A+ + G++ E   V  ++ + 
Sbjct: 92  LLQSCTPRRVNSLVFNALSQLRGSKFNPSVF---GVLIIAFSEVGLVDEALRVYLKVGAF 148

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
              P +   N L++   K+ +FD M +++ +++  +  PT+ T+N ++    +     +A
Sbjct: 149 ---PAVQACNALLNGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRA 205

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAML 268
           + +  +M      P+ + Y  +I  +G C    +  A  +F ++   G    + T N ++
Sbjct: 206 KSLISEMVKKGIEPTVVIYTTLI--HGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLM 263

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           + YC      +A  L++   + G+ P+  T+ +L  A  K       ++   +M + G+V
Sbjct: 264 DGYCKTANVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVV 323

Query: 329 PNKRFFLEALETFSSSLAGSQSGSAKTDL 357
           PN   F   ++ +S   AG+ S +  TDL
Sbjct: 324 PNVVVFNSLIDGYSK--AGNCSEA--TDL 348



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA-- 67
           D   YS LI    + G    A  +   M   G   +  VYN+LI  +    +  KAL   
Sbjct: 360 DVFTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIF 419

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           KA  +F  M+     +P+ + Y ++L+    A+++  V  L  ++ +  + P+  T   V
Sbjct: 420 KATKFFSDMR-RNGLRPDALAYAVMLQGHLNAKHMADVMMLHADMIKMGIVPNEVTSQVV 478

Query: 128 MDAYGKNGMIK 138
              Y  NG +K
Sbjct: 479 RRGYQDNGYLK 489


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 135/297 (45%), Gaps = 5/297 (1%)

Query: 12  GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           G++  L +V  + G    A   FS M      P     NA +   L    K     K   
Sbjct: 183 GVFDALFSVFIELGMLEEAGQCFSRMTRFRVFPKARSCNAFLY-RLAKTGKGDLSNK--- 238

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           +F+ M G    + ++ TYNI++    +  ++    +LF ++ +  L PDI TYN ++D Y
Sbjct: 239 FFRDMVGAGIAQ-SVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGY 297

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
           GK G++ E   +   MK   C+PD+IT+N LI+ + K +   K       + +S  KP +
Sbjct: 298 GKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNV 357

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            T++++I    K  +  +A      M  +  +P+  TY  +I        +S A ++ DE
Sbjct: 358 VTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADE 417

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           + ++     V T   +L+  C  G   EA+ LF      GVTP+  TY  L   + K
Sbjct: 418 MLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIK 474



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 150/365 (41%), Gaps = 41/365 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ     D   Y+ LI   GK G    +  LF EM++ GC PD   YNALI        K
Sbjct: 279 KQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFC----K 334

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            + + KA  +  +MK     KPN+VTY+ L+ A  +   + Q      ++    L+P+ +
Sbjct: 335 YEQMPKAFHFLHEMKN-SGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEF 393

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++DA  K G + +   +   M   Q   +++T+  L+D   K     + E +F+++
Sbjct: 394 TYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAM 453

Query: 183 MHSKEKPTLPTFNSMIINYGKAR----------------------LQG------------ 208
           + +   P L T+ +++  + K +                      L G            
Sbjct: 454 IKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKL 513

Query: 209 -KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            + E+V  +M A     + + Y   +  Y        A  +  E+  LG ++ + T   +
Sbjct: 514 EECEFVMSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVL 573

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDS-STYKLLYKAYTKANMKELVQKLLKRMEQNG 326
           ++  C  GL  EA   F    +  + P++ +    L     K N  E  +KL   M+   
Sbjct: 574 IDGLCKKGLVEEAIDYFARMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDKN 633

Query: 327 IVPNK 331
           +VP+K
Sbjct: 634 MVPDK 638



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 128/289 (44%), Gaps = 5/289 (1%)

Query: 42  CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN 101
           C P   V++AL +  +    +   L +A   F +M    R  P   + N  L   A+   
Sbjct: 178 CVPGFGVFDALFSVFI----ELGMLEEAGQCFSRMTRF-RVFPKARSCNAFLYRLAKTGK 232

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
            D  N  F+++  + +A  ++TYN ++    K G +   +S+  +MK     PDI+T+N 
Sbjct: 233 GDLSNKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNS 292

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           LID YGK    D+   +F+ +     +P + T+N++I  + K     KA +   +M    
Sbjct: 293 LIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSG 352

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
             P+ +TY  +I        + +A +   ++ ++G      T  ++++A C  G  ++A 
Sbjct: 353 LKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDAL 412

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            L +    + V  +  TY  L     K       + L + M + G+ PN
Sbjct: 413 KLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPN 461



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 105/244 (43%), Gaps = 2/244 (0%)

Query: 90  NILLRACAQARNVDQVNALFKELHES--ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           N  L+    +R +     +F+ L  +  +  P    ++ +   + + GM++E     SRM
Sbjct: 149 NFFLKELISSRRILPGFDVFEVLWSTRNVCVPGFGVFDALFSVFIELGMLEEAGQCFSRM 208

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
              +  P   + N  +    K    D   + F+ ++ +    ++ T+N MI    K    
Sbjct: 209 TRFRVFPKARSCNAFLYRLAKTGKGDLSNKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDM 268

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
             A+ +F +M  M  TP  +TY  +I  YG    +  +  +F+E+  +G +  V T NA+
Sbjct: 269 VTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNAL 328

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +  +C      +A        N G+ P+  TY  L  A  K +M +   K L  M + G+
Sbjct: 329 INCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGL 388

Query: 328 VPNK 331
            PN+
Sbjct: 389 SPNE 392



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 133/329 (40%), Gaps = 16/329 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + K+G+   A  LF  M  +G  P+   Y AL+  H+  +    AL       
Sbjct: 430 YTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIK 489

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +K       KP+++ Y  ++        +++   +  E+    +  +   Y   MDAY K
Sbjct: 490 EKKI-----KPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIRMDAYFK 544

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT-LP 192
            G   E  ++L  M     +  I+TF +LID   K+   ++    F  +     +P  + 
Sbjct: 545 TGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAIDYFARMADFNLQPNNVA 604

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
              ++I    K      A+ +F +M      P  I Y  +I       +   A  I   +
Sbjct: 605 VCTALIDGLCKNNYIEAAKKLFDEMQDKNMVPDKIAYTALIDGNLKHKDFQEALNIRSRM 664

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS-TYKLLYKAYTKANM 311
           S+LG ++ +    +++       L  +A +        G+ PD     +LL K Y   ++
Sbjct: 665 SELGMELDLHAYTSLVWGLSQGNLVQQARMFLNEMIGKGIVPDEILCIRLLRKYYELGSI 724

Query: 312 KELVQ---KLLKR------MEQNGIVPNK 331
            E ++   +LLK+      +E+  ++P K
Sbjct: 725 DEAIELHDELLKKVPLDELLEEQNLMPEK 753



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/246 (20%), Positives = 99/246 (40%), Gaps = 6/246 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y  +I  +  + +     ++ SEM+  G R +  +Y   + A+     K     +A
Sbjct: 496 DLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIRMDAYF----KTGKTVEA 551

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD-IYTYNGVM 128
           L   Q+M  +   +  IVT+ +L+    +   V++    F  + +  L P+ +     ++
Sbjct: 552 LNLLQEMCDL-GVEVTIVTFCVLIDGLCKKGLVEEAIDYFARMADFNLQPNNVAVCTALI 610

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D   KN  I+  + +   M+     PD I +  LID   K + F +   +   +     +
Sbjct: 611 DGLCKNNYIEAAKKLFDEMQDKNMVPDKIAYTALIDGNLKHKDFQEALNIRSRMSELGME 670

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             L  + S++    +  L  +A     +M      P  I    ++  Y    ++  A E+
Sbjct: 671 LDLHAYTSLVWGLSQGNLVQQARMFLNEMIGKGIVPDEILCIRLLRKYYELGSIDEAIEL 730

Query: 249 FDELSK 254
            DEL K
Sbjct: 731 HDELLK 736


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 158/370 (42%), Gaps = 50/370 (13%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R    D G  + ++  +  +G    A+ L  ++ + GC PD   YNA++        K  
Sbjct: 186 RGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVL--------KGL 237

Query: 65  ALAKALGYFQK-MKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            +AK  G  Q+ M+ M R  C PNIVT+N L+    +    ++V+ +  ++ E    PDI
Sbjct: 238 CMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDI 297

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI------------------------- 156
             Y  ++D   K G +K    +L+RM S   KP++                         
Sbjct: 298 RMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAE 357

Query: 157 ----------ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
                     +TFN+L+D + +    D++ ++ + ++     P + T+ ++I  + K  L
Sbjct: 358 MFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGL 417

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTL 264
             +A  + + MTA    P+ I+Y   I + G C  +    A ++  ++ + G  +   T 
Sbjct: 418 IDEAVMLLKSMTACGCKPNTISYT--IVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITF 475

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N ++   C  GL  +A  L +     G +PD  +Y  +     KA   +   +LL  M  
Sbjct: 476 NTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVN 535

Query: 325 NGIVPNKRFF 334
            G+ PN   +
Sbjct: 536 KGMSPNTIIY 545



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 147/354 (41%), Gaps = 36/354 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---------------HLH 58
           Y  ++  +  +G+   A+ +  EM   GC P P +Y+ ++ A                LH
Sbjct: 125 YFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLH 184

Query: 59  TRDKA----------------KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
            R  A                 ++ KAL   + +     C+P++V+YN +L+    A+  
Sbjct: 185 ARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFG-CEPDVVSYNAVLKGLCMAKRW 243

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
             V  L +E+      P+I T+N ++    +NG+ + +  VL++M  + C PDI  +  +
Sbjct: 244 GCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATI 303

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           ID   K        ++   +     KP +  +N+++     A    + E +  +M     
Sbjct: 304 IDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDC 363

Query: 223 TPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
               +T+  ++    +C N  V R  E+ +++   G    V T   ++  +C  GL  EA
Sbjct: 364 PLDDVTFNILVDF--FCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEA 421

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            +L ++    G  P++ +Y ++ K    A      + L+ +M Q G   N   F
Sbjct: 422 VMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITF 475



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 143/326 (43%), Gaps = 7/326 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ +I  + K+G  ++A  + + M + G +P+   YN L+   L + ++ +   + 
Sbjct: 296 DIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKG-LCSAERWEETEEL 354

Query: 70  LG-YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           L   F K      C  + VT+NIL+    Q   VD+V  L +++      PD+ TY  V+
Sbjct: 355 LAEMFDK-----DCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVI 409

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + + K G+I E   +L  M +  CKP+ I++ +++      + +   E +   ++     
Sbjct: 410 NGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCP 469

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
               TFN++I    K  L  +A  + ++M     +P  I+Y  +I   G       A E+
Sbjct: 470 LNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALEL 529

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            + +   G        +++  A    G   +   +F+N  +  +  D+  Y  +  +  K
Sbjct: 530 LNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCK 589

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
               E   + L  M  +G VPN+  +
Sbjct: 590 RGETERAIEFLAYMVSSGCVPNESTY 615



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 119/277 (42%), Gaps = 14/277 (5%)

Query: 49  YNALITAHLHTR--DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQV 105
           YNA++  +      + A+ LA A+             PN  TY  ++RA CA+ R  D +
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVPV----------PPNAYTYFPVVRALCARGRIADAL 142

Query: 106 NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
            A+  E+     AP    Y+ +++A  + G  +    VL  + +  C  D+   NL++++
Sbjct: 143 -AVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNA 201

Query: 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
              + + DK   + + L     +P + ++N+++     A+  G  + + ++M  M   P+
Sbjct: 202 ICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPN 261

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
            +T+  +I+         R  E+  ++++ G    +     +++  C  G    A  +  
Sbjct: 262 IVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILN 321

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
              + G+ P+   Y  L K    A   E  ++LL  M
Sbjct: 322 RMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEM 358


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 143/348 (41%), Gaps = 9/348 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           Q  Y  D   Y+ +I+ + K+     A  +  +MR +GC P+   YNALI      R   
Sbjct: 351 QNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPE 410

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           +AL   L    +  G+    PNI TY IL     + R +D+   +F E     L P+  T
Sbjct: 411 EALE--LVTLMEQGGV---PPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVT 465

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN +++ Y +   + E   +L  M  N C PD +T+  LI    +        ++   + 
Sbjct: 466 YNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEME 525

Query: 184 HSKEKPTLPTFNSMIINYGKARL--QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           +        T N  I+  G AR+     A   +++M    +  S   Y   I        
Sbjct: 526 NKGYDVNFDTLN--ILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGE 583

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +  A+ +  E+   G    ++T N M++ +C  G   +AD +       G+ PD+ +Y +
Sbjct: 584 MEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNI 643

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQ 349
           L K +      +   +L     + G+V N +  ++  +     L  SQ
Sbjct: 644 LIKEFHNQGRTQDADQLYATALERGVVLNPKPVIQEPDELPEGLVRSQ 691



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 140/323 (43%), Gaps = 6/323 (1%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + DT   S L++++  K +  +A  LF++M N+G   +   Y ++I           A+ 
Sbjct: 286 LIDTAYNSVLVSLVKNK-KLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMK 344

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
                 Q         P++VTY I++ A  + + ++Q   + +++ E+   P+IYTYN +
Sbjct: 345 LLDDMIQNNYA-----PDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNAL 399

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +         +E   +++ M+     P+I T+ +L     K +  D+ +++F   +    
Sbjct: 400 IQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGL 459

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           KP   T+N+++  Y +     +A  + ++M     TP  +TY  +I      + +  A  
Sbjct: 460 KPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALR 519

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           + DE+   G D+   TLN +       G   +A + +    + G    +S Y L     +
Sbjct: 520 MHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLS 579

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
            A   E  Q LL  M   G  PN
Sbjct: 580 TAGEMEEAQALLYEMINKGYSPN 602



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 74/171 (43%), Gaps = 2/171 (1%)

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           +ID  G+ + F +++ + + +     + T    +S +++YG++    ++   F  M  M 
Sbjct: 222 MIDILGRAKMFTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMG 281

Query: 222 YTPSFI--TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
           Y P  I   Y  ++        +  A  +F ++   G      T  +M++ + +     +
Sbjct: 282 YEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMED 341

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           A  L ++       PD  TY ++  A  K  M E    +L++M +NG  PN
Sbjct: 342 AMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPN 392


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 149/346 (43%), Gaps = 35/346 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA-------- 65
           Y+ +I    K G    A  ++++M+N    P     N+LI  +L  R   +A        
Sbjct: 367 YAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAV 426

Query: 66  ----------------------LAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARN 101
                                 +++A   ++KM  KG+   +P++V+YN ++    Q  +
Sbjct: 427 ACGIANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGV---RPSVVSYNNMILGHCQQGD 483

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
           +D  N +F E+ E  L P++ TY+ +MD Y K G  +    +  RM+     P   T N+
Sbjct: 484 MDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNI 543

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           +I+   K     + +   K L+     PT  T+N +I  + K      A  V+ +M  + 
Sbjct: 544 IINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIG 603

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
            +P+  TY  +I  +   +N+  A ++ DE+   G ++ V+   A+++ +C  G    A 
Sbjct: 604 VSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNAS 663

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
            L      +G++P+   Y  +   + K    E    L KRM   GI
Sbjct: 664 QLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGI 709



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 146/325 (44%), Gaps = 16/325 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS +I  + KK  +  A+ L  EMR+ G  P   ++  +I   +      +A+   
Sbjct: 258 DARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAV--- 314

Query: 70  LGYFQKMKG-MERC-KP-NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
                K+KG M  C KP N+V    L++   +  ++D    LF +++E+ + P+  TY  
Sbjct: 315 -----KVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAV 369

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           +++   KNG + +   + ++MK+    P +   N LI  Y K ++ ++  ++F   +   
Sbjct: 370 IIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACG 429

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSR 244
                 T+NS++    K     +A  +++KM      PS ++Y  +I   G+C   ++  
Sbjct: 430 IANVF-TYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMI--LGHCQQGDMDS 486

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  +F E+ + G    + T + +++ Y   G    A  L++      + P   T  ++  
Sbjct: 487 ANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIIN 546

Query: 305 AYTKANMKELVQKLLKRMEQNGIVP 329
              KA      Q  LK++ Q G +P
Sbjct: 547 GLCKAGRTSESQDRLKKLVQEGFIP 571



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/345 (20%), Positives = 148/345 (42%), Gaps = 12/345 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           + + ++    I++++I V  K+G+   A+ +  EM + G   +  V   L+  +    D 
Sbjct: 286 RDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGD- 344

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              L  AL  F KM     C PN VTY +++  C +  N+D+   ++ ++    ++P ++
Sbjct: 345 ---LDSALELFDKMNENGIC-PNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVF 400

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCK-PDIITFNLLIDSYGKRQAFDKMEQVFKS 181
             N ++  Y K    +E   +    ++  C   ++ T+N L+    K     +   +++ 
Sbjct: 401 NVNSLIRGYLKARSPEEASKLFD--EAVACGIANVFTYNSLLSWLCKEGKMSEACSIWEK 458

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++    +P++ ++N+MI+ + +      A  VF +M      P+ ITY  ++  Y    +
Sbjct: 459 MVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGD 518

Query: 242 VSRAREIFDELSKLGKDMKVS--TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
              A  ++D +   G+++  S  T N ++   C  G  +E+    +     G  P   TY
Sbjct: 519 TEYAFGLYDRMR--GENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTY 576

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             +   + K         +   M + G+ PN   +   +  F  S
Sbjct: 577 NCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKS 621



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/353 (20%), Positives = 138/353 (39%), Gaps = 32/353 (9%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA-- 65
           IA+   Y+ L++ + K+G+   A  ++ +M   G RP    YN +I  H    D   A  
Sbjct: 430 IANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANG 489

Query: 66  -----LAKAL------------GYFQK------------MKGMERCKPNIVTYNILLRAC 96
                L K L            GYF+K            M+G E   P+  T NI++   
Sbjct: 490 VFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRG-ENIAPSDFTCNIIINGL 548

Query: 97  AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
            +A    +     K+L +    P   TYN ++D + K G +    +V + M      P++
Sbjct: 549 CKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNV 608

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
            T+  LI+ + K    D   +V   + +   +  +  + ++I  + +      A  +  +
Sbjct: 609 FTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSE 668

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           +  +  +P+ + Y  +I+ +    N+  A  +   +   G    +     ++      G 
Sbjct: 669 LQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGK 728

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
              A  L+      G+ PD  TY +L          E  QK+L+ M++  + P
Sbjct: 729 LLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTP 781



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/338 (21%), Positives = 134/338 (39%), Gaps = 56/338 (16%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL------HTRDKAKALA 67
           YS L+    KKG T  A  L+  MR     P     N +I           ++D+ K L 
Sbjct: 506 YSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLV 565

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +  G+           P  +TYN ++    +  +V+   A++ E+ +  ++P+++TY  +
Sbjct: 566 QE-GFI----------PTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNL 614

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           ++ + K+  +     V+  MK+   + D+  +  LID + ++       Q+   L     
Sbjct: 615 INGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGL 674

Query: 188 KPTLPTFNSMI-------------------INYG-KARLQ------------GK---AEY 212
            P    ++SMI                   IN G    LQ            GK   A  
Sbjct: 675 SPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASE 734

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
           ++ +M A    P  ITY  +I  +G C+   +  A++I +++ +      V   N ++  
Sbjct: 735 LYAEMLAKGIMPDLITYSVLI--HGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITG 792

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           +   G   EA  L     + G+ PD +TY +L     K
Sbjct: 793 HFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKVK 830



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/242 (19%), Positives = 101/242 (41%)

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
            +N LL +  + + ++     F  L E  + P +   N  +    KN MI+E   V ++M
Sbjct: 156 VFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMIREARDVYNKM 215

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
            S   K D  T +++I +  +    ++ E  F+   +   +     ++ +I    K    
Sbjct: 216 ASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDS 275

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
             A  + ++M    + P  + +  +I +      +  A ++  E+   GK M V     +
Sbjct: 276 VAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTL 335

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           ++ YC  G    A  LF+  +  G+ P++ TY ++ +   K    +   ++  +M+   I
Sbjct: 336 MKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDI 395

Query: 328 VP 329
            P
Sbjct: 396 SP 397



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/188 (19%), Positives = 78/188 (41%), Gaps = 36/188 (19%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA-----------HLH 58
           D  +Y  LI    +KG    A  L SE++  G  P+  VY+++I+            HLH
Sbjct: 642 DVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLH 701

Query: 59  TRDKAKALAKALGYFQKM----------------------KGMERCKPNIVTYNILLRAC 96
            R   + +   L  +  +                      KG+    P+++TY++L+   
Sbjct: 702 KRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGI---MPDLITYSVLIHGL 758

Query: 97  AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
                ++    + +++    + P ++ YN ++  + K G ++E   + + M      PD 
Sbjct: 759 CNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDD 818

Query: 157 ITFNLLID 164
            T+++L++
Sbjct: 819 TTYDILVN 826



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/394 (20%), Positives = 153/394 (38%), Gaps = 80/394 (20%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           +D+ +++ L+    K  +   A+  F+ +      P  +V N  ++  +    K   + +
Sbjct: 152 SDSRVFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELV----KNNMIRE 207

Query: 69  ALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A   + KM  KG+   K +  T ++++RA  +   +++    F+E     +  D   Y+ 
Sbjct: 208 ARDVYNKMASKGV---KGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSI 264

Query: 127 VMDAYGKN-------GMIKEM--------ESVLSR-----MKSNQ-------------C- 152
           V++A  K        G+++EM        E + +R     MK  +             C 
Sbjct: 265 VIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCG 324

Query: 153 KP-DIITFNLLIDSYGKR-------QAFDKME---------------------------- 176
           KP +++    L+  Y K+       + FDKM                             
Sbjct: 325 KPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAY 384

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           +++  + +    PT+   NS+I  Y KAR   +A  +F +  A      F TY  +++  
Sbjct: 385 EIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIANVF-TYNSLLSWL 443

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                +S A  I++++ + G    V + N M+  +C  G    A+ +F      G+ P+ 
Sbjct: 444 CKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNL 503

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            TY +L   Y K    E    L  RM    I P+
Sbjct: 504 ITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPS 537



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 61/146 (41%)

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            FN ++ +Y K +    A   F  +      P        ++     + +  AR++++++
Sbjct: 156 VFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMIREARDVYNKM 215

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           +  G     +T++ M+ A    G   EA+  F  + N GV  D+  Y ++ +A  K    
Sbjct: 216 ASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDS 275

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEAL 338
                LL+ M   G VP++  F   +
Sbjct: 276 VAALGLLREMRDKGWVPHEVIFTRVI 301



 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 7/128 (5%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            D  IY+ LI+ + K+G+   A  L++EM   G  PD   Y+ LI    H       L  
Sbjct: 711 CDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLI----HGLCNKGQLEN 766

Query: 69  ALGYFQKMKGMERC-KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           A    + M    +C  P +  YN L+    +  N+ +   L  E+ +  L PD  TY+ +
Sbjct: 767 AQKILEDMD--RKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDIL 824

Query: 128 MDAYGKNG 135
           ++   K+G
Sbjct: 825 VNGKVKDG 832


>gi|298204410|emb|CBI16890.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 159/347 (45%), Gaps = 16/347 (4%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + +  I++ LI    K G    A  L +EM +    PD   YN LI+ +     K     
Sbjct: 219 VPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYC----KKGMHY 274

Query: 68  KALGYFQKMKGMER--CKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTY 124
           +ALG   +M   ER    P+IVTYN L+   C +  ++++   L + +    L P + TY
Sbjct: 275 EALGIQDRM---ERGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVEGLHPGVVTY 331

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++    + G IK+   +L+ M   + +PD +T N LI++Y K        +V K ++ 
Sbjct: 332 NSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLE 391

Query: 185 SKEKPTLPTFNSMIINYGKAR-LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
           +  KP   TF ++I  + K   +    E++F+ + A  ++PS+ TY  ++  Y   DN  
Sbjct: 392 AGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDA-GFSPSYSTYSWLVDSYYDQDNKE 450

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
               + DELS+ G  + +S   A++   C       A+ +F      G+  DS  Y  L 
Sbjct: 451 AVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLA 510

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
            AY KA        +L  M++  ++      L+    FS+S AG  S
Sbjct: 511 YAYFKAGKAIAASDMLDEMDKRRLMIT----LKIYRCFSASYAGDGS 553



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 152/323 (47%), Gaps = 12/323 (3%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           +++ I S L+        T+ A+ +F  MR  G +P       L    L++  KA+    
Sbjct: 150 SNSQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVL----LNSLAKARLTNM 205

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
               ++KM  +    PNI  +N+L+ AC ++ +V++   L  E+    + PD++TYN ++
Sbjct: 206 VWKVYKKMVRVG-VVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLI 264

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV--FKSLMHSK 186
             Y K GM  E   +  RM+     PDI+T+N LI  YG  +  + +E+    + +M  +
Sbjct: 265 SLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLI--YGFCREVNDLEEALRLREVMEVE 322

Query: 187 E-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
              P + T+NS++    +      A  +  +M+  K  P  +T   +I  Y    ++  A
Sbjct: 323 GLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSA 382

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYC-MNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
            ++  ++ + G      T  A++  +C ++ + +  + LFE   + G +P  STY  L  
Sbjct: 383 MKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEML-DAGFSPSYSTYSWLVD 441

Query: 305 AYTKANMKELVQKLLKRMEQNGI 327
           +Y   + KE V +L   + + G+
Sbjct: 442 SYYDQDNKEAVIRLPDELSRKGL 464



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/154 (20%), Positives = 67/154 (43%), Gaps = 12/154 (7%)

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           +H          + ++I Y  +R+   A  VF+ M    + P    + C + +    +++
Sbjct: 144 IHDDPDSNSQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHL--HACTVLL----NSL 197

Query: 243 SRAR------EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
           ++AR      +++ ++ ++G    +   N ++ A C +G   +A+ L     +  + PD 
Sbjct: 198 AKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDL 257

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            TY  L   Y K  M      +  RME+ G+ P+
Sbjct: 258 FTYNTLISLYCKKGMHYEALGIQDRMERGGVSPD 291


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 146/323 (45%), Gaps = 9/323 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  + K      A+ LF++M  +G RP+   YNAL+T          A      + 
Sbjct: 191 YTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDA-----AWL 245

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +     R +PN++T+  L+ A  +   + +   L+  + +  + PD++TY  +++    
Sbjct: 246 LRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCM 305

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G++ E   +   M+ N C P+ + +  LI  + K +  +   ++F  +          T
Sbjct: 306 YGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTIT 365

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDE 251
           +  +I  Y        A+ VF +M++ +  P   TY  ++   G C N  V +A  IF+ 
Sbjct: 366 YTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLD--GLCCNGKVEKALMIFEY 423

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + K   D+ + T   +++  C  G   +A  LF +  + G+ P+  TY  +   + +  +
Sbjct: 424 MRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGL 483

Query: 312 KELVQKLLKRMEQNGIVPNKRFF 334
                 L K+M+++G +PN+  +
Sbjct: 484 IHEADSLFKKMKEDGFLPNESVY 506



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 127/275 (46%), Gaps = 9/275 (3%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A     +M   G  PD   + +L+  + H       +  A+  F ++ GM   KPN+VTY
Sbjct: 137 ASCFLGKMMKLGFEPDLVTFTSLLNGYCH----WNRIEDAIALFDQILGMGF-KPNVVTY 191

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
             L+R   + R+++    LF ++  +   P++ TYN ++    + G   +   +L  M  
Sbjct: 192 TTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMK 251

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
            + +P++ITF  LID++ K     + ++++  ++     P + T+ S+I       L  +
Sbjct: 252 RRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDE 311

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAM 267
           A  +F  M      P+ + Y  +I  +G+C +  V    +IF E+S+ G      T   +
Sbjct: 312 ARQMFYLMERNGCYPNEVIYTTLI--HGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVL 369

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           ++ YC+ G P  A  +F    +    PD  TY +L
Sbjct: 370 IQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVL 404



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/301 (20%), Positives = 135/301 (44%), Gaps = 5/301 (1%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ LF+ M +S  RP PS+ +   T  L    K       +  F++M+ +    P + T 
Sbjct: 67  ALDLFTRMVHS--RPLPSIID--FTRLLSVIAKMNRYDVVISLFEQMQILG-IPPLLCTC 121

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           NI++     +    + +    ++ +    PD+ T+  +++ Y     I++  ++  ++  
Sbjct: 122 NIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILG 181

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
              KP+++T+  LI    K +  +   ++F  +  +  +P + T+N+++    +    G 
Sbjct: 182 MGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGD 241

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A ++ + M   +  P+ IT+  +I  +     +  A+E+++ + ++     V T  +++ 
Sbjct: 242 AAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLIN 301

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             CM GL  EA  +F      G  P+   Y  L   + K+   E   K+   M Q G+V 
Sbjct: 302 GLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVA 361

Query: 330 N 330
           N
Sbjct: 362 N 362



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/322 (20%), Positives = 142/322 (44%), Gaps = 11/322 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +++L++V+ K  +  + + LF +M+  G  P     N ++     +    +A +  LG  
Sbjct: 86  FTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRA-SCFLGKM 144

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K+ G E   P++VT+  LL        ++   ALF ++      P++ TY  ++    K
Sbjct: 145 MKL-GFE---PDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCK 200

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           N  +     + ++M +N  +P+++T+N L+    +   +     + + +M  + +P + T
Sbjct: 201 NRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVIT 260

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII---TMYGYCDNVSRAREIFD 250
           F ++I  + K     +A+ ++  M  M   P   TY  +I    MYG  D    AR++F 
Sbjct: 261 FTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLD---EARQMFY 317

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            + + G          ++  +C +    +   +F      GV  ++ TY +L + Y    
Sbjct: 318 LMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVG 377

Query: 311 MKELVQKLLKRMEQNGIVPNKR 332
             ++ Q++  +M      P+ R
Sbjct: 378 RPDVAQEVFNQMSSRRAPPDIR 399



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 121/279 (43%), Gaps = 7/279 (2%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           AL  F +M    R  P+I+ +  LL   A+    D V +LF+++    + P + T N VM
Sbjct: 67  ALDLFTRMVH-SRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVM 125

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
                +         L +M     +PD++TF  L++ Y      +    +F  ++    K
Sbjct: 126 HCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFK 185

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR---A 245
           P + T+ ++I    K R    A  +F +M      P+ +TY  ++T  G C+ + R   A
Sbjct: 186 PNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVT--GLCE-IGRWGDA 242

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             +  ++ K   +  V T  A+++A+   G   EA  L+     M V PD  TY  L   
Sbjct: 243 AWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLING 302

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
                + +  +++   ME+NG  PN+  +   +  F  S
Sbjct: 303 LCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKS 341



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 9/223 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  LI  +   G    A  +F  M  +GC P+  +Y  LI    H   K+K +   
Sbjct: 292 DVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLI----HGFCKSKRVEDG 347

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           +  F +M  KG+     N +TY +L++        D    +F ++      PDI TYN +
Sbjct: 348 MKIFYEMSQKGV---VANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVL 404

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D    NG +++   +   M+  +   +I+T+ ++I    K    +    +F SL     
Sbjct: 405 LDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGM 464

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
           KP + T+ +MI  + +  L  +A+ +F+KM    + P+   Y+
Sbjct: 465 KPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVYK 507



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           Q+  +A+T  Y+ LI      G+  +A  +F++M +    PD   YN L+   L    K 
Sbjct: 356 QKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDG-LCCNGKV 414

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           +   KAL  F+ M+  E    NIVTY I+++   +   V+    LF  L    + P++ T
Sbjct: 415 E---KALMIFEYMRKREM-DINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVIT 470

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
           Y  ++  + + G+I E +S+  +MK +   P+
Sbjct: 471 YTTMISGFCRRGLIHEADSLFKKMKEDGFLPN 502



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 4/161 (2%)

Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
           F+    +F  ++HS+  P++  F  ++    K         +F++M  +   P   T  C
Sbjct: 64  FNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCT--C 121

Query: 232 IITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289
            I M+  C      RA     ++ KLG +  + T  ++L  YC      +A  LF+    
Sbjct: 122 NIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILG 181

Query: 290 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           MG  P+  TY  L +   K        +L  +M  NG  PN
Sbjct: 182 MGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPN 222


>gi|410110089|gb|AFV61124.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           macropoda]
          Length = 427

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 141/302 (46%), Gaps = 5/302 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF EMR     PD   Y+ LIT H     K      AL + QKM+  +R   ++V Y+ L
Sbjct: 3   LFDEMRQRALSPDRYTYSTLIT-HF---GKEGLFDAALSWLQKME-QDRVPGDLVLYSNL 57

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +  +  +  ++F  L +S   PD+  YN +++ +GK  + +E  S++  MK+   
Sbjct: 58  IELSRKLCDYSKAISIFSRLKKSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGV 117

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+  +  +A+ 
Sbjct: 118 MPNTXSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 177

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T N+M   Y 
Sbjct: 178 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMXMIYG 237

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
                 +A+ L +   + G+ P+S TY  +   + K    +    L +++  +GI  ++ 
Sbjct: 238 KTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQI 297

Query: 333 FF 334
            F
Sbjct: 298 LF 299



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 112/224 (50%)

Query: 107 ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
            LF E+ +  L+PD YTY+ ++  +GK G+     S L +M+ ++   D++ ++ LI+  
Sbjct: 2   GLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 61

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
            K   + K   +F  L  S   P L  +N+MI  +GKA+L  +A  +  +M A    P+ 
Sbjct: 62  RKLCDYSKAISIFSRLKKSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNT 121

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
            +Y  ++TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF  
Sbjct: 122 XSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWG 181

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              MG+ P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 182 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 225



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 153/327 (46%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 8   RQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 67

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  
Sbjct: 68  SKAIS----IFSRLKK-SGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTX 122

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +
Sbjct: 123 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 182

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  +  +YG     
Sbjct: 183 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMXMIYGKTLEH 242

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + G+  D   ++ +
Sbjct: 243 EKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTM 302

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  +++   +P
Sbjct: 303 IVAYERAGLVAHAKRLLHELKRPDNIP 329



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 138/340 (40%), Gaps = 42/340 (12%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L  EM+ +G  P+   Y+ L+T ++     
Sbjct: 78  KKSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTMYVEN--- 134

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 135 -KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 193

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +   YGK    ++  +++  M+
Sbjct: 194 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMXMIYGKTLEHEKANNLIQEMQ 253

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           S   +P+ IT++ +I  +GK    D+   +F+ L  S  +     F +MI+ Y +A L  
Sbjct: 254 SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVA 313

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++      P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 314 HAKRLLHELK----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMI 369

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
                    +    +F+    +G  PDS    ++  AY K
Sbjct: 370 HLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGK 409



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 113/271 (41%), Gaps = 36/271 (13%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           +I V G+ G  + A  LF  MR  G  P+   YN L+  +      A+   +A+  F+ M
Sbjct: 162 MIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVY----GDAELFGEAIHLFRLM 217

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +  +  + N+VTYN +     +    ++ N L +E+    + P+  TY+ ++  +GK G 
Sbjct: 218 Q-RKNIEQNVVTYNSMXMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGK 276

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSY--------GKRQAFD--------------- 173
           +     +  +++S+  + D I F  +I +Y         KR   +               
Sbjct: 277 LDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHI 336

Query: 174 -----KMEQ---VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
                ++E+   VF+  + + E   +  F  MI    K +       VF KM  + Y P 
Sbjct: 337 LAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPD 396

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLG 256
                 ++  YG      +A +++ E+ ++G
Sbjct: 397 SDVIAIVLNAYGKLQEFDKANDVYMEMQEVG 427


>gi|255661218|gb|ACU25778.1| pentatricopeptide repeat-containing protein [Casselia glaziovii]
          Length = 426

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 152/320 (47%), Gaps = 5/320 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI   GK+G+   A+    +M       D  +Y+ LI       D +KA++  
Sbjct: 8   DRYTYSTLITHFGKEGRFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSKAIS-- 65

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  +Y+ ++ 
Sbjct: 66  --IFSRLK-RSGITPDLVAYNSMINVFGKAKLFKEARSLIGEMRTAGVMPNTISYSTLLT 122

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y +N    E  SV + M+  QC  D+IT N++ID YG+     + +++F      + +P
Sbjct: 123 MYVENKKFIEALSVFAEMREIQCSLDLITCNIMIDVYGQLGMAKEADKLFWGXRKMEIEP 182

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG      +A  + 
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLI 242

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+   G +    T + ++  +   G    A +LF+   + G+  D   Y+ +   Y +A
Sbjct: 243 QEMQNRGIEPNTITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQVLYQTMIITYERA 302

Query: 310 NMKELVQKLLKRMEQNGIVP 329
            +    ++LL  +++   +P
Sbjct: 303 GLVAHAKRLLHELKRPDNIP 322



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 105/214 (49%)

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           L+PD YTY+ ++  +GK G   +  S L +M+ ++   D++ ++ LI+   K   + K  
Sbjct: 5   LSPDRYTYSTLITHFGKEGRFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSKAI 64

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
            +F  L  S   P L  +NSMI  +GKA+L  +A  +  +M      P+ I+Y  ++TMY
Sbjct: 65  SIFSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLIGEMRTAGVMPNTISYSTLLTMY 124

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                   A  +F E+ ++   + + T N M++ Y   G+  EAD LF     M + P+ 
Sbjct: 125 VENKKFIEALSVFAEMREIQCSLDLITCNIMIDVYGQLGMAKEADKLFWGXRKMEIEPNV 184

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +Y  L + Y  A +      L + M++  I  N
Sbjct: 185 VSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 218



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 146/353 (41%), Gaps = 42/353 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I V GK    + A  L  EMR +G  P+   Y+ L+T ++      K   +A
Sbjct: 78  DLVAYNSMINVFGKAKLFKEARSLIGEMRTAGVMPNTISYSTLLTMYVEN----KKFIEA 133

Query: 70  LGYFQKMK---------------------GMER-------------CKPNIVTYNILLRA 95
           L  F +M+                     GM +              +PN+V+YN LLR 
Sbjct: 134 LSVFAEMREIQCSLDLITCNIMIDVYGQLGMAKEADKLFWGXRKMEIEPNVVSYNTLLRV 193

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
              A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M++   +P+
Sbjct: 194 YGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMQNRGIEPN 253

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
            IT++ +I  +GK    D+   +F+ L  S  +     + +MII Y +A L   A+ +  
Sbjct: 254 TITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQVLYQTMIITYERAGLVAHAKRLLH 313

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
           ++      P  I  +  I +      +  A  +F +  + G+   ++    M++ +    
Sbjct: 314 ELK----RPDNIPRDTAIHILAGAGRIEEATWVFRQAIEAGEVKDITVFEHMIDLFSKYK 369

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             +    +F+    +G  PDS    L+  AY K    +   ++   M+  G +
Sbjct: 370 KYSNIIEVFDKMRGIGYFPDSRVIALVLNAYGKLQEFDKANEVYMEMQDEGCI 422



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 110/247 (44%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+  TY+ L+    +    D   +  +++ E  +  D+  Y+ +++   K     +  S+
Sbjct: 7   PDRYTYSTLITHFGKEGRFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
            SR+K +   PD++ +N +I+ +GK + F +   +   +  +   P   ++++++  Y +
Sbjct: 67  FSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLIGEMRTAGVMPNTISYSTLLTMYVE 126

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
            +   +A  VF +M  ++ +   IT   +I +YG       A ++F    K+  +  V +
Sbjct: 127 NKKFIEALSVFAEMREIQCSLDLITCNIMIDVYGQLGMAKEADKLFWGXRKMEIEPNVVS 186

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N +L  Y    L  EA  LF       +  +  TY  +   Y K    E    L++ M+
Sbjct: 187 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMQ 246

Query: 324 QNGIVPN 330
             GI PN
Sbjct: 247 NRGIEPN 253


>gi|410110141|gb|AFV61150.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           turbinata]
          Length = 441

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 142/302 (47%), Gaps = 5/302 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF EMR     PD   Y+ LIT H     K      AL + QKM+  ++   ++V Y+ L
Sbjct: 3   LFDEMRQRALSPDRYTYSTLIT-HF---GKEGLFDAALSWLQKME-QDQVPGDLVLYSNL 57

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  S++S MK+   
Sbjct: 58  IELSRKLCDYSKAISIFSRLKXSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGV 117

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+  +  +A+ 
Sbjct: 118 MPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 177

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T N+M+  Y 
Sbjct: 178 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 237

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
                 +A+ L +   + GV P+S TY  +   + K    +    L +++  +G+  ++ 
Sbjct: 238 KTLEHEKANNLIQEMQSRGVEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQI 297

Query: 333 FF 334
            F
Sbjct: 298 LF 299



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 154/327 (47%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 8   RQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDY 67

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  
Sbjct: 68  SKAIS----IFSRLK-XSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 122

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +
Sbjct: 123 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 182

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG     
Sbjct: 183 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 242

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + GV  D   ++ +
Sbjct: 243 EKANNLIQEMQSRGVEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTM 302

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  +++   +P
Sbjct: 303 IVAYERAGLVAHAKRLLHELKRPDNIP 329



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 112/225 (49%)

Query: 106 NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
           + LF E+ +  L+PD YTY+ ++  +GK G+     S L +M+ +Q   D++ ++ LI+ 
Sbjct: 1   HGLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIEL 60

Query: 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
             K   + K   +F  L  S   P L  +N+MI  +GKA+L  +A  +  +M      P+
Sbjct: 61  SRKLCDYSKAISIFSRLKXSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPN 120

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
             +Y  ++TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF 
Sbjct: 121 TTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFW 180

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
               MG+ P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 181 GMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 225



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 151/370 (40%), Gaps = 42/370 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K   +  D   Y+ +I V GK    R A  L SEM+ +G  P+ + Y+ L+T ++     
Sbjct: 78  KXSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVEN--- 134

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 135 -KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 193

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 194 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 253

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           S   +P+ IT++ +I  +GK    D+   +F+ L  S  +     F +MI+ Y +A L  
Sbjct: 254 SRGVEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVA 313

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++      P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 314 HAKRLLHELK----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMI 369

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
                    +    +F+    +G  PDS    ++  AY K    +    +   M++ G V
Sbjct: 370 HLLSKYKKYSNVIEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVGCV 429

Query: 329 PNKRFFLEAL 338
            + +   + L
Sbjct: 430 FSDQVHFQML 439


>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 140/327 (42%), Gaps = 5/327 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ LI    + G    A  +FS M + G   +  +Y  +I        K          
Sbjct: 144 IYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFE----L 199

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           +QKMK +    PN+ TYN L+    +   +     +F E+ +  +A +  TYN ++    
Sbjct: 200 YQKMK-LVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLC 258

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           + G + + E +L RMK     P   TFN+L+D        DK     + L      PTL 
Sbjct: 259 RKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLV 318

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+N +I  + K         + ++M     +PS +TY  ++  +   D++ +A E+F  +
Sbjct: 319 TYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLM 378

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            ++G      T   ++   C+ G   EA  L+++   M + P+   Y  +   Y K    
Sbjct: 379 KRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNS 438

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALE 339
               K L+ M +NG+ PN   ++  ++
Sbjct: 439 YKALKFLEEMVKNGVTPNVASYISTIQ 465



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 133/285 (46%), Gaps = 6/285 (2%)

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           K+  L +  G+F +  G  R + ++ ++ I ++A  +  NV +   L  ++    ++P++
Sbjct: 85  KSGNLDRTWGFFTEYLG--RTQFDVYSFGITIKAFCENGNVSKGFELLAQMETMGVSPNV 142

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           + Y  +++A  +NG I + + + SRM       +   + ++I+ + K+       ++++ 
Sbjct: 143 FIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQK 202

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC-- 239
           +      P L T+NS+I  Y +      A  VF +++      + +TY  +I   G C  
Sbjct: 203 MKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIG--GLCRK 260

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             VS+A  + + + +   +    T N +++  C  G   +A    E    +G+ P   TY
Sbjct: 261 GQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTY 320

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            +L   ++K     +V +L++ ME  GI P+K  +   + TF  S
Sbjct: 321 NILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRS 365


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 149/336 (44%), Gaps = 12/336 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA-- 67
           D   Y+ +I    K G+ + A  +  + +  G  PD   Y +LI       D   ALA  
Sbjct: 292 DDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALF 351

Query: 68  -KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            +ALG     KG+   KP+IV YN L++  +Q   V +   L  ++ +  ++PDI+TYN 
Sbjct: 352 EEALG-----KGL---KPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNL 403

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           V++   K G + +  ++L+   +    PDI TFN LID Y KR   D    +  S+    
Sbjct: 404 VINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHG 463

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P + T+NS++    KA         F+ +      P+ ITY  +I        V+ A 
Sbjct: 464 VTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEAL 523

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN-SHNMGVTPDSSTYKLLYKA 305
           ++ +E+   G      +   ++  +C NG   EA  LF        +    +TY ++  A
Sbjct: 524 DLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINA 583

Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           +++    ++ QKL   M   G  P+   +   ++ F
Sbjct: 584 FSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGF 619



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 152/336 (45%), Gaps = 12/336 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K + ++ D   Y  LI  + + G    A+ LF E    G +P   +YN LI        +
Sbjct: 320 KFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKG----LSQ 375

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              + KAL     M   E   P+I TYN+++    +   V   N L          PDI+
Sbjct: 376 QGLVLKALQLMNDMSK-EGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIF 434

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           T+N ++D Y K   +     +L  M S+   PD+IT+N +++   K    + + + FK +
Sbjct: 435 TFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMI 494

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN- 241
           M     P + T+N +I +  KAR   +A  + +++      P  +++  +I+  G+C+N 
Sbjct: 495 MEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVIS--GFCNNG 552

Query: 242 -VSRAREIFDELSKLGKDMK-VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            +  A ++F  + +  +    V+T N M+ A+        A  LF    + G  PDS TY
Sbjct: 553 DLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTY 612

Query: 300 KLLYKAYTK-ANMKELVQKLLKRMEQNGIVPNKRFF 334
           +++   + K  N+      LLK +E  G VP+   F
Sbjct: 613 RVMIDGFCKVGNVNSGYDFLLKEIEI-GFVPSLTTF 647



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 137/325 (42%), Gaps = 12/325 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y  +I+   ++     A  LF++M   G  P  + +N L    +H   K   L +    
Sbjct: 183 VYCTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKL----MHILCKKGHLQEGEKL 238

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE----LHESI---LAPDIYTYN 125
             K+     C PN+ T+NI ++   +   ++  N+   E    LH+ +   L PD +TYN
Sbjct: 239 LNKVLKNGVC-PNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYN 297

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++  Y K G I++   +L   K     PD  T+  LI    +    D    +F+  +  
Sbjct: 298 TIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGK 357

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
             KP++  +N++I    +  L  KA  +   M+    +P   TY  +I        VS A
Sbjct: 358 GLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDA 417

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             + +     G    + T N +++ YC       A  + ++  + GVTPD  TY  +   
Sbjct: 418 NNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNG 477

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
             KA   E V +  K + + G +PN
Sbjct: 478 LCKAAKPEDVMETFKMIMEKGCLPN 502



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 136/338 (40%), Gaps = 12/338 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA---LAKAL 70
           ++KL+ ++ KKG  +    L +++  +G  P+   +N  I           A   + +A 
Sbjct: 219 FNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAE 278

Query: 71  GYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
            Y  KM  KG+E   P+  TYN ++   ++   +   + + K+       PD +TY  ++
Sbjct: 279 NYLHKMVNKGLE---PDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLI 335

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
               ++G I    ++         KP I+ +N LI    ++    K  Q+   +      
Sbjct: 336 IGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMS 395

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV--SRAR 246
           P + T+N +I    K      A  +     A  Y P   T+  +I   GYC  +    A 
Sbjct: 396 PDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLID--GYCKRLKMDNAI 453

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            I D +   G    V T N++L   C    P +    F+     G  P+  TY +L ++ 
Sbjct: 454 GILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESL 513

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            KA        LL+ +   G++P+   F   +  F ++
Sbjct: 514 CKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNN 551



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 152/375 (40%), Gaps = 45/375 (12%)

Query: 12  GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT----------AH-LHTR 60
           G+Y   +   G+KG+ + A+ +F  M    C P    YNA++           AH ++ R
Sbjct: 77  GVYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLR 136

Query: 61  DKAKALAKALGYFQ-KMKGMER------------------CKPNIVTYNILLRACAQARN 101
            K + +A  +  F  ++K   R                  C+ N V Y  ++    +   
Sbjct: 137 MKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENY 196

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
             +   LF ++    + P I T+N +M    K G ++E E +L+++  N   P++ TFN+
Sbjct: 197 QVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNI 256

Query: 162 LIDSYGKRQAFD-------KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
            I    ++   +       + E     +++   +P   T+N++I  Y K      A  + 
Sbjct: 257 FIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRIL 316

Query: 215 QKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTL--NAMLEA 270
           +      + P   TY  +I   G C   ++  A  +F+E   LGK +K S +  N +++ 
Sbjct: 317 KDAKFKGFVPDEFTYCSLII--GVCQDGDIDHALALFEE--ALGKGLKPSIVLYNTLIKG 372

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
               GL  +A  L  +    G++PD  TY L+     K         LL      G +P+
Sbjct: 373 LSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPD 432

Query: 331 KRFFLEALETFSSSL 345
              F   ++ +   L
Sbjct: 433 IFTFNTLIDGYCKRL 447



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 129/313 (41%), Gaps = 6/313 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I  + K G    A  L +     G  PD   +N LI  +     K   +  A
Sbjct: 397 DIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYC----KRLKMDNA 452

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +G    M       P+++TYN +L    +A   + V   FK + E    P+I TYN +++
Sbjct: 453 IGILDSMWS-HGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIE 511

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS-KEK 188
           +  K   + E   +L  +++    PD ++F  +I  +      D+  Q+F+ +    +  
Sbjct: 512 SLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRIC 571

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
            T+ T+N MI  + +      A+ +F +M      P   TY  +I  +    NV+   + 
Sbjct: 572 HTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDF 631

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             +  ++G    ++T   ++   C+     EA  +       GV P++            
Sbjct: 632 LLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRTGVVPEAVVTIFDADKKAV 691

Query: 309 ANMKELVQKLLKR 321
           A  K +V+ LLK+
Sbjct: 692 AAPKIIVEDLLKK 704



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/308 (20%), Positives = 128/308 (41%), Gaps = 19/308 (6%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI---LAPDIYTY 124
           KAL  F  +K  +  K   +TY  ++         D +  +  E+  ++   L   +Y  
Sbjct: 22  KALSIFNSVKKEDGFKHTFLTYKRMIEKLGFHGEFDAMERVLMEMRLNVDNSLLEGVYV- 80

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
              M  YG+ G ++E   V  RM    C+P I ++N +++   +   F++  +V+  + H
Sbjct: 81  -SAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKH 139

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
               P + TF   I ++ + +    A  +   M +     + + Y  +I+ +   +    
Sbjct: 140 EGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVE 199

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A E+F+++ +LG    ++T N ++   C  G   E + L       GV P+  T+ +  +
Sbjct: 200 AYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQ 259

Query: 305 AYTK------ANMKEL-VQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDL 357
              +      AN K +  +  L +M   G+ P+         T+++ + G        D 
Sbjct: 260 GLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDF-------TYNTIIYGYSKVGKIQDA 312

Query: 358 TRSLSTAK 365
           +R L  AK
Sbjct: 313 SRILKDAK 320


>gi|449523013|ref|XP_004168519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like, partial [Cucumis sativus]
          Length = 594

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 145/323 (44%), Gaps = 7/323 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ LI   G  G  R A+ +  +M ++G  PD   +N +++A+          +KAL YF
Sbjct: 8   FNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAY----KSGAQYSKALSYF 63

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE--SILAPDIYTYNGVMDAY 131
           + MKG    +P+  T NI++    + +   Q   +F  + E  S   PD+ T+  ++  Y
Sbjct: 64  ELMKG-TNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLY 122

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
              G I++ ++V S M +   KP+I+++N LI +Y       +   VF  +  S   P +
Sbjct: 123 SVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDV 182

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
            ++ S+I  +G+++   +A  VF  M   K  P+ ++Y  ++  YG    + +A +I  E
Sbjct: 183 VSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILRE 242

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           + + G    V ++  +L A    G     D +   +   G+  ++        +Y     
Sbjct: 243 MEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGE 302

Query: 312 KELVQKLLKRMEQNGIVPNKRFF 334
            E    L + ME     P+   F
Sbjct: 303 YEKAINLYRSMENKTTKPDSVTF 325



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 142/319 (44%), Gaps = 7/319 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL-HTRDKAKALAK 68
           D   ++ +I +   +GQ      +FS M   G +P+   YNALI+A+  H  DK     +
Sbjct: 111 DVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDK-----E 165

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A   F +MK    C P++V+Y  L+    +++   +   +F  +  +   P++ +YN +M
Sbjct: 166 AFSVFDEMKRSGFC-PDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALM 224

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           DAYG NG + +   +L  M+ +   P++++   L+ + G+      ++ V  +       
Sbjct: 225 DAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIH 284

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
                 NS I +Y       KA  +++ M      P  +T+  +I+          A   
Sbjct: 285 LNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCF 344

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           F E+  L   +     ++M+ AY   G   +A+ LF +    G  PD  TY  +  AY+ 
Sbjct: 345 FKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSA 404

Query: 309 ANMKELVQKLLKRMEQNGI 327
           + M E V  L + ME N I
Sbjct: 405 SEMWEKVCALYQEMEANNI 423



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 148/329 (44%), Gaps = 5/329 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI+     G  + A  +F EM+ SG  PD   Y +LI+    T  +++  A+A   F
Sbjct: 150 YNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLIS----TFGRSQQPARAREVF 205

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             MK   +CKPN+V+YN L+ A      + Q   + +E+ +  + P++ +   ++ A G+
Sbjct: 206 DMMK-RNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGR 264

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G    ++SVLS  +      + I  N  I SY     ++K   +++S+ +   KP   T
Sbjct: 265 FGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTKPDSVT 324

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           F  +I    +     +A   F++M  ++   S   Y  +I  Y     + +A  +F+ L 
Sbjct: 325 FTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLK 384

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    + T  AM+ AY  + +  +   L++      +  DS     L KA+ K N   
Sbjct: 385 GSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANNIQLDSIACSALMKAFNKGNQAS 444

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            V  L + M++ GI  N   F E L   S
Sbjct: 445 NVLILAEIMKEKGIPFNDANFFEMLSACS 473



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 135/297 (45%), Gaps = 11/297 (3%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMK-GMERCKPNIVT 88
           A+  F  M+ +  RPD +  N +I    H   K K   +A+  F  M+     C+P++VT
Sbjct: 59  ALSYFELMKGTNIRPDTTTLNIVI----HCLIKVKQYGQAIEIFSSMREKRSECRPDVVT 114

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           +  ++   +    ++   A+F  +    + P+I +YN ++ AY  +GM KE  SV   MK
Sbjct: 115 FTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMK 174

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
            +   PD++++  LI ++G+ Q   +  +VF  +  +K KP L ++N+++  YG      
Sbjct: 175 RSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLP 234

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL---GKDMKVSTLN 265
           +A  + ++M      P+ ++   I T+   C    +   I   LS     G  +     N
Sbjct: 235 QAVDILREMEQDGIHPNVVS---ICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACN 291

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           + + +Y   G   +A  L+ +  N    PDS T+ +L     + +  E      K M
Sbjct: 292 SAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEM 348



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 112/249 (44%), Gaps = 2/249 (0%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P+  T+N L+ AC    N  +   + K++ ++ + PD+ T+N V+ AY       +  S 
Sbjct: 3   PSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSY 62

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH--SKEKPTLPTFNSMIINY 201
              MK    +PD  T N++I    K + + +  ++F S+    S+ +P + TF S+I  Y
Sbjct: 63  FELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLY 122

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
                    + VF  M A    P+ ++Y  +I+ Y        A  +FDE+ + G    V
Sbjct: 123 SVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDV 182

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            +  +++  +  +  P  A  +F+        P+  +Y  L  AY           +L+ 
Sbjct: 183 VSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILRE 242

Query: 322 MEQNGIVPN 330
           MEQ+GI PN
Sbjct: 243 MEQDGIHPN 251



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 97/216 (44%), Gaps = 2/216 (0%)

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
           + P   T+N +++A G  G  +E   V  +M  N   PD++T N+++ +Y     + K  
Sbjct: 1   IPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKAL 60

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT--PSFITYECIIT 234
             F+ +  +  +P   T N +I    K +  G+A  +F  M   +    P  +T+  II 
Sbjct: 61  SYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIH 120

Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294
           +Y     +   + +F  +   G    + + NA++ AY  +G+  EA  +F+     G  P
Sbjct: 121 LYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCP 180

Query: 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           D  +Y  L   + ++      +++   M++N   PN
Sbjct: 181 DVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPN 216



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/321 (19%), Positives = 140/321 (43%), Gaps = 11/321 (3%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           L+A  G+ GQ      + S     G   +    N+ I ++++  +      KA+  ++ M
Sbjct: 258 LLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGE----YEKAINLYRSM 313

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
           +  +  KP+ VT+ IL+  C +    ++    FKE+ +  +      Y+ ++ AY K G 
Sbjct: 314 EN-KTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQ 372

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           + + ES+ + +K + C PD++T+  +I++Y   + ++K+  +++ +  +  +      ++
Sbjct: 373 LVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANNIQLDSIACSA 432

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           ++  + K   Q     +  ++   K  P          M   C  +   R+  D ++ + 
Sbjct: 433 LMKAFNKGN-QASNVLILAEIMKEKGIP--FNDANFFEMLSACSILRDWRKATDLINLME 489

Query: 257 KD---MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
                + + T+N +L+    +G       LF     +G + + +TY +L K    A    
Sbjct: 490 PSFHLVSLGTINHLLQFLGKSGKTEIMIKLFYRFVALGSSVNINTYSILLKNLLSAGKWR 549

Query: 314 LVQKLLKRMEQNGIVPNKRFF 334
              ++L+ M   GI P+   +
Sbjct: 550 KYIEVLQWMNDAGIQPSHAMY 570



 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 95/233 (40%), Gaps = 39/233 (16%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-----------LHTRD 61
           IYS +I    K+GQ   A  LF+ ++ SGC PD   Y A+I A+           L+   
Sbjct: 359 IYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEM 418

Query: 62  KAK----------ALAKA------------LGYFQKMKGMERCKPNIVTYNILLRACAQA 99
           +A           AL KA            L    K KG+     N      +L AC+  
Sbjct: 419 EANNIQLDSIACSALMKAFNKGNQASNVLILAEIMKEKGIPFNDANFFE---MLSACSIL 475

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
           R+  +   L   +  S     + T N ++   GK+G  + M  +  R  +     +I T+
Sbjct: 476 RDWRKATDLINLMEPSFHLVSLGTINHLLQFLGKSGKTEIMIKLFYRFVALGSSVNINTY 535

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           ++L+ +      + K  +V + +  +  +P+   +N+++     A+  G AEY
Sbjct: 536 SILLKNLLSAGKWRKYIEVLQWMNDAGIQPSHAMYNNILF---FAQHCGDAEY 585


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 155/337 (45%), Gaps = 20/337 (5%)

Query: 8   IADTGIYS---KLIAVMGK--KGQTRLAMW--LFSEMRNSGCRPDPSVYNALITAHLHTR 60
           + + G++    KL  ++GK    Q     W  L   MR  G   D +  NAL+T     R
Sbjct: 237 LGERGVFPDGFKLTQLVGKLCGDQKNGVAWEVLHCVMRLGGAV-DAASCNALLTWLGRGR 295

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES----- 115
           D  K + + L   +K K     +P++VT+ IL+    +AR +D+   +F  L        
Sbjct: 296 D-IKRMNELLAEMEKRK----IRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNW 350

Query: 116 -ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK-SNQCKPDIITFNLLIDSYGKRQAFD 173
             + PD+  +N ++D   K G  ++  S+L  MK  N  +P+ +T+N LID + K   FD
Sbjct: 351 VGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFD 410

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           +  ++F+ +     +P + T N+++    K     +A   F +M       +  TY  +I
Sbjct: 411 RAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALI 470

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
           + +   +N++RA + F+E+   G         +++   C+ G   +A ++       G +
Sbjct: 471 SAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFS 530

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            D S Y +L   + K    E V +LL  ME+ G+ P+
Sbjct: 531 LDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPD 567



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 142/322 (44%), Gaps = 6/322 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           +T  Y+ LI    K G    A  LF +M   G +P+    N L+        K   + +A
Sbjct: 392 NTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLC----KHGRVHRA 447

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           + +F +MKG +  K N  TY  L+ A     N+++    F+E+  S  +PD   Y  ++ 
Sbjct: 448 VEFFNEMKG-KGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLIS 506

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
                G + +   V+S++K      D   +N+LI  + K++  +++ ++   +  +  KP
Sbjct: 507 GLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKP 566

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T+N++I   GK      A  V +KM      PS +TY  II  Y    NV    +IF
Sbjct: 567 DTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIF 626

Query: 250 DELSKLGKDMKVSTL-NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            E+    K    + + N +++A C N     A  L E+     V P+++TY  + K    
Sbjct: 627 GEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRD 686

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
             M     +L+ RM +    P+
Sbjct: 687 KKMLHKAFELMDRMVEEACRPD 708



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 143/343 (41%), Gaps = 46/343 (13%)

Query: 30  AMWLFSEMRNSG------CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK 83
           A+ +F  +R  G        PD  ++N LI        K       L   ++MK     +
Sbjct: 335 ALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLC----KVGKEEDGLSLLEEMKMGNINR 390

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           PN VTYN L+    +A N D+ + LF++++E  + P++ T N ++D   K+G +      
Sbjct: 391 PNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEF 450

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI----- 198
            + MK    K +  T+  LI ++      ++  Q F+ ++ S   P    + S+I     
Sbjct: 451 FNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCI 510

Query: 199 --------INYGKARLQG-------------------KAEYVFQKMTAMKYT---PSFIT 228
                   +   K +L G                   K E V++ +T M+ T   P  IT
Sbjct: 511 AGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTIT 570

Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF-ENS 287
           Y  +I+  G   + + A ++ +++ K G    V T  A++ AYC      E   +F E  
Sbjct: 571 YNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMC 630

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
               V P++  Y +L  A  + N  +    L++ M+   + PN
Sbjct: 631 STSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPN 673



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 4/168 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  Y+ LI+ +GK G    A  +  +M   G RP    Y A+I A+       K + + 
Sbjct: 567 DTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYC----SKKNVDEG 622

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +  F +M    +  PN V YNIL+ A  +  +VD+  +L +++    + P+  TYN ++ 
Sbjct: 623 MKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILK 682

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
                 M+ +   ++ RM    C+PD IT  +L +        +K++ 
Sbjct: 683 GVRDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWLSAVGEIEKLKH 730


>gi|255573471|ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532966|gb|EEF34732.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 766

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 141/300 (47%), Gaps = 9/300 (3%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           L  EMR +G  P+   +N LI    H   K + L KAL  F  M  +   + NI T NI+
Sbjct: 450 LVHEMRMNGSVPNSFTFNRLI----HGFCKRQRLDKALEVFTIMLKVG-VQLNIFTCNIM 504

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
                +  +  +   L  E+ +  + P+ YTYN V+    K    ++   VL  M  N  
Sbjct: 505 ADEFNREGHFWEALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNV 564

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY--GKARLQGKA 210
            P  I +N LID Y K+    K   ++  ++     P++ T+ +M+IN    ++++Q +A
Sbjct: 565 FPCAIHYNTLIDGYAKQSNPTKALLLYAKMLKVGIPPSIVTY-TMLINMFSNRSKMQ-EA 622

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
            Y+F++M      P  I + CII  +    ++  A  +++E+S+ GK   V T   +++ 
Sbjct: 623 YYLFKEMIKKGLVPDEIIFTCIIAGFCKVGDMKSAWALYEEMSQWGKSPNVVTYTCLIDG 682

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y       +AD LF       VTPD  TY  L   Y      + V+++   M++NG+ PN
Sbjct: 683 YFKIKRMDKADFLFNKMKRDNVTPDGLTYTALIFGYQSLGYSDRVREMFNEMKENGVFPN 742



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 151/351 (43%), Gaps = 41/351 (11%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD---KAKALAKALGYF 73
           L+    +  QT     LF E+++SG  P P+V+   I  + + +    K   + KA    
Sbjct: 219 LLNCFAEANQTEFIRSLFEELKDSG--PSPNVFTYTIMMNYYCKGSFGKNIDIVKATEVL 276

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M+ M    P +VTY   +    +A  V+    L ++L       + Y YN V+  + +
Sbjct: 277 EEME-MNGESPTVVTYGAYIHGLCRAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHEFCR 335

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           NG + E   +L  M+S+   P   ++++LID   K+   +K   + + ++ S  KP+L T
Sbjct: 336 NGELHEAFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSNVKPSLVT 395

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT------------------- 234
           ++S+     K+ L   +  +F  + A  Y    I+Y  +I                    
Sbjct: 396 YSSLFDGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACKLVHEMR 455

Query: 235 --------------MYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
                         ++G+C    + +A E+F  + K+G  + + T N M + +   G   
Sbjct: 456 MNGSVPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCNIMADEFNREGHFW 515

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
           EA  L     ++G+ P+S TY ++ K   K    E   ++L  M +N + P
Sbjct: 516 EALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFP 566



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 136/321 (42%), Gaps = 5/321 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I    + G+   A  L  +MR+ G  P    Y+ LI        K   + KAL   
Sbjct: 326 YNAVIHEFCRNGELHEAFELLEDMRSHGISPTAYSYSILIDGLC----KKGQVEKALDLI 381

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M      KP++VTY+ L     ++   +   ++F  L       D+ +YN +++ +  
Sbjct: 382 EEMV-QSNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLINGFVL 440

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              +     ++  M+ N   P+  TFN LI  + KRQ  DK  +VF  ++    +  + T
Sbjct: 441 QRDMGSACKLVHEMRMNGSVPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFT 500

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
            N M   + +     +A  +  ++  +   P+  TY  +I          +A E+   + 
Sbjct: 501 CNIMADEFNREGHFWEALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVML 560

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           K          N +++ Y     PT+A LL+     +G+ P   TY +L   ++  +  +
Sbjct: 561 KNNVFPCAIHYNTLIDGYAKQSNPTKALLLYAKMLKVGIPPSIVTYTMLINMFSNRSKMQ 620

Query: 314 LVQKLLKRMEQNGIVPNKRFF 334
               L K M + G+VP++  F
Sbjct: 621 EAYYLFKEMIKKGLVPDEIIF 641



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 117/264 (44%), Gaps = 9/264 (3%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY-----GKNGMIKE 139
           NI++ N LL   A+A   + + +LF+EL +S  +P+++TY  +M+ Y     GKN  I +
Sbjct: 212 NILSCNFLLNCFAEANQTEFIRSLFEELKDSGPSPNVFTYTIMMNYYCKGSFGKNIDIVK 271

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
              VL  M+ N   P ++T+   I    +    +   ++ + L    +      +N++I 
Sbjct: 272 ATEVLEEMEMNGESPTVVTYGAYIHGLCRAGCVEFALRLIRDLRIRNQPLNSYCYNAVIH 331

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGK 257
            + +     +A  + + M +   +P+  +Y  +I   G C    V +A ++ +E+ +   
Sbjct: 332 EFCRNGELHEAFELLEDMRSHGISPTAYSYSILID--GLCKKGQVEKALDLIEEMVQSNV 389

Query: 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
              + T +++ +  C +GL   +  +F N    G   D  +Y  L   +          K
Sbjct: 390 KPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACK 449

Query: 318 LLKRMEQNGIVPNKRFFLEALETF 341
           L+  M  NG VPN   F   +  F
Sbjct: 450 LVHEMRMNGSVPNSFTFNRLIHGF 473



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 90/194 (46%), Gaps = 9/194 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    K+     A+ L+++M   G  P    Y  LI      R K   + +A   F
Sbjct: 571 YNTLIDGYAKQSNPTKALLLYAKMLKVGIPPSIVTYTMLINM-FSNRSK---MQEAYYLF 626

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
           ++M  KG+    P+ + +  ++    +  ++    AL++E+ +   +P++ TY  ++D Y
Sbjct: 627 KEMIKKGL---VPDEIIFTCIIAGFCKVGDMKSAWALYEEMSQWGKSPNVVTYTCLIDGY 683

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K   + + + + ++MK +   PD +T+  LI  Y      D++ ++F  +  +   P  
Sbjct: 684 FKIKRMDKADFLFNKMKRDNVTPDGLTYTALIFGYQSLGYSDRVREMFNEMKENGVFPNY 743

Query: 192 PTFNSMIINYGKAR 205
             + ++ ++ G  R
Sbjct: 744 TAYATLGLHLGVVR 757


>gi|255661204|gb|ACU25771.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 426

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 135/290 (46%), Gaps = 5/290 (1%)

Query: 38  RNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACA 97
           R     P+   Y+ LIT H     K      AL + Q M+  +R   ++V Y+ L+    
Sbjct: 1   RZRALSPERYTYSTLIT-HF---GKEGLFDDALSWLQXME-QDRVPGDLVLYSNLIELSR 55

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           +  +  +  ++F  L  S + PD   YN +++ +GK  + KE  S++S MK+    PD +
Sbjct: 56  KLCDYSKAISIFSRLKRSGITPDXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTV 115

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
           +++ L+  Y + Q F +   VF  +   K    L T N MI  YG+  +  +A+ +F  M
Sbjct: 116 SYSTLLTMYVENQKFLEALSVFAEMREIKCSLDLTTCNIMIDVYGQLDMAKEADKLFWSM 175

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
             +   P+ I+Y  ++ +YG  +    A  +F  + +   +  V T N M+  Y      
Sbjct: 176 RKIGIEPNVISYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEH 235

Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
            +A+ L +  HN G+ P++ TY  +   + K    +    L +++  +G+
Sbjct: 236 EKANNLIQEMHNXGIEPNAITYSTIISIWGKVGKLDRAAXLFQKLRSSGV 285



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 148/316 (46%), Gaps = 5/316 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI   GK+G    A+     M       D  +Y+ LI       D +KA++     F
Sbjct: 12  YSTLITHFGKEGLFDDALSWLQXMEQDRVPGDLVLYSNLIELSRKLCDYSKAIS----IF 67

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++K      P+ V YN ++    +A+   +  +L  E+  + + PD  +Y+ ++  Y +
Sbjct: 68  SRLK-RSGITPDXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYSTLLTMYVE 126

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           N    E  SV + M+  +C  D+ T N++ID YG+     + +++F S+     +P + +
Sbjct: 127 NQKFLEALSVFAEMREIKCSLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKIGIEPNVIS 186

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N+++  YG A L G+A ++F+ M       + +TY  ++ +YG      +A  +  E+ 
Sbjct: 187 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMH 246

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G +    T + ++  +   G    A  LF+   + GV  D   Y+ +  AY +A +  
Sbjct: 247 NXGIEPNAITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQVLYQTMIVAYERAGLVA 306

Query: 314 LVQKLLKRMEQNGIVP 329
             ++LL  +++   +P
Sbjct: 307 HAKRLLHELKRPDNIP 322



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 106/217 (48%)

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
           Z  L+P+ YTY+ ++  +GK G+  +  S L  M+ ++   D++ ++ LI+   K   + 
Sbjct: 2   ZRALSPERYTYSTLITHFGKEGLFDDALSWLQXMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           K   +F  L  S   P    +NSMI  +GKA+L  +A  +  +M      P  ++Y  ++
Sbjct: 62  KAISIFSRLKRSGITPDXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYSTLL 121

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
           TMY        A  +F E+ ++   + ++T N M++ Y    +  EAD LF +   +G+ 
Sbjct: 122 TMYVENQKFLEALSVFAEMREIKCSLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKIGIE 181

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 182 PNVISYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 218



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/348 (20%), Positives = 147/348 (42%), Gaps = 36/348 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I V GK    + A  L SEM+ +G  PD   Y+ L+T ++      +   +A
Sbjct: 78  DXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYSTLLTMYVEN----QKFLEA 133

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ +YN ++ 
Sbjct: 134 LSVFAEMREI-KCSLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKIGIEPNVISYNTLLR 192

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            YG   +  E   +   M+    + +++T+N ++  YGK    +K   + + + +   +P
Sbjct: 193 VYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNXGIEP 252

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T++++I  +GK     +A  +FQK+ +       + Y+ +I  Y     V+ A+ + 
Sbjct: 253 NAITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLL 312

Query: 250 DELSK-------------------------------LGKDMKVSTLNAMLEAYCMNGLPT 278
            EL +                                G+   ++  + M++ +       
Sbjct: 313 HELKRPDNIPRDTAXHILAGAGRIEEATWVFRQAIDAGEVKDITVFSRMIDLFSKYKKYA 372

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
               +F+    +G  PDS+   L+  AY K +  +    +   M+  G
Sbjct: 373 NVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKAHXVYMNMQDEG 420



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 108/247 (43%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P   TY+ L+    +    D   +  + + +  +  D+  Y+ +++   K     +  S+
Sbjct: 7   PERYTYSTLITHFGKEGLFDDALSWLQXMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
            SR+K +   PD + +N +I+ +GK + F +   +   +  +   P   ++++++  Y +
Sbjct: 67  FSRLKRSGITPDXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYSTLLTMYVE 126

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
            +   +A  VF +M  +K +    T   +I +YG  D    A ++F  + K+G +  V +
Sbjct: 127 NQKFLEALSVFAEMREIKCSLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKIGIEPNVIS 186

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N +L  Y    L  EA  LF       +  +  TY  +   Y K    E    L++ M 
Sbjct: 187 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMH 246

Query: 324 QNGIVPN 330
             GI PN
Sbjct: 247 NXGIEPN 253


>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 149/333 (44%), Gaps = 11/333 (3%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           + LI  +  +G    A+ L   M       D   Y  LI     T D   A+    G+ +
Sbjct: 151 TTLINGLCVQGNVAQAVGLADHMEKMWYPLDVYTYGVLINGLCKTGDTLAAV----GWLR 206

Query: 75  KMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           KM+  ER  KPN+V Y+ ++    +   V +   L  E++   + P++ TY  ++     
Sbjct: 207 KME--ERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCN 264

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G  KE  S+L  M     +PD+   N+L+D++ K     + + V   ++ + E P + T
Sbjct: 265 FGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFT 324

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDE 251
           +NS+I  Y       +A  VF  M +    P  + +  +I  +G+C   N+++A  + +E
Sbjct: 325 YNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLI--HGWCKDKNINKAMHLLEE 382

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +SK+G    V+T   ++  +C  G P  A  LF N H  G  P+  T  ++     K N+
Sbjct: 383 MSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENL 442

Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
                 L K ME++ +  N   +   L+   S+
Sbjct: 443 LSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSA 475



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 160/376 (42%), Gaps = 43/376 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++ WY  D   Y  LI  + K G T  A+    +M     +P+  VY+ ++        K
Sbjct: 174 EKMWYPLDVYTYGVLINGLCKTGDTLAAVGWLRKMEERNWKPNVVVYSTIMDGLC----K 229

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              +++AL    +M G +  +PN+VTY  L++         +  +L  E+ +  + PD+ 
Sbjct: 230 DGLVSEALNLCSEMNG-KGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQ 288

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
             N ++DA+ K G + + +SV+  M      PD+ T+N LI  Y  +   ++  +VF  +
Sbjct: 289 MLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLM 348

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           +     P +  F S+I  + K +   KA ++ ++M+ M + P   T+  +I  +      
Sbjct: 349 VSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRP 408

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA------------DL-------- 282
             A+E+F  + K G+   + T   +L+  C   L +EA            DL        
Sbjct: 409 LAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSIL 468

Query: 283 ---------------LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
                          LF +    G+  +   Y ++ K   K    +  + LL  ME+NG 
Sbjct: 469 LDGMCSAGKLNAAWELFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGC 528

Query: 328 VPNK---RFFLEALET 340
           +PN      F++ L T
Sbjct: 529 LPNNCTYNVFVQGLLT 544



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 18/217 (8%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           ++ D   ++ LI    + G+   A  LF  M   G  P+      ++         ++A+
Sbjct: 388 FVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLSEAV 447

Query: 67  AKALGYFQKMKGMERCKP--NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           + A       K ME+     NIV Y+ILL     A  ++    LF  L    L  ++Y Y
Sbjct: 448 SLA-------KAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYIY 500

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
             ++    K G + + E +L  M+ N C P+  T+N+ +     ++   +  + + ++M 
Sbjct: 501 TIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGLLTKKEIARSIK-YLTIMR 559

Query: 185 SKEKPTLPTFNSMIINY-----GKARLQGKAEYVFQK 216
            K           IINY     G  +++   E++F+K
Sbjct: 560 DKGFSVDAATTEFIINYLSTNEGDTKIR---EFLFRK 593



 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 59/283 (20%), Positives = 106/283 (37%), Gaps = 41/283 (14%)

Query: 62  KAKALAKALGYFQKMKGMERCKP--NIVTYNILLRACAQARNVDQVNALFKELHESI-LA 118
           K K + +AL  FQ   GM R KP  ++  + +LL A  + ++     +L K +  S+ + 
Sbjct: 53  KLKNIDEALDLFQ---GMARMKPLPSVKDFTLLLGAIVRLKHYTTAISLVKHMFSSLGIE 109

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
            D  T N V++   +  ++    SVL  M     +P ++T   LI               
Sbjct: 110 ADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTTLI--------------- 154

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
                           N + +    A+  G A++    M  M Y     TY  +I     
Sbjct: 155 ----------------NGLCVQGNVAQAVGLADH----MEKMWYPLDVYTYGVLINGLCK 194

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             +   A     ++ +      V   + +++  C +GL +EA  L    +  GV P+  T
Sbjct: 195 TGDTLAAVGWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVT 254

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
           Y  L +        +    LL  M + G+ P+ +     ++ F
Sbjct: 255 YACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAF 297


>gi|410110135|gb|AFV61147.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rotundifolia]
          Length = 440

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 142/302 (47%), Gaps = 5/302 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF EMR     PD   Y+ LIT H     K      AL + QKM+  ++   ++V Y+ L
Sbjct: 3   LFDEMRQRALSPDRYTYSTLIT-HF---GKEGLFDAALSWLQKME-QDQVPGDLVLYSNL 57

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  S++S MK+   
Sbjct: 58  IELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGV 117

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+  +  +A+ 
Sbjct: 118 MPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 177

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T N+M+  Y 
Sbjct: 178 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 237

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
                 +A+ L +   + G+ P+S TY  +   + K    +    L +++  +G+  ++ 
Sbjct: 238 KTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQI 297

Query: 333 FF 334
            F
Sbjct: 298 LF 299



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 112/225 (49%)

Query: 106 NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
           + LF E+ +  L+PD YTY+ ++  +GK G+     S L +M+ +Q   D++ ++ LI+ 
Sbjct: 1   HGLFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIEL 60

Query: 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
             K   + K   +F  L  S   P L  +N+MI  +GKA+L  +A  +  +M      P+
Sbjct: 61  SRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPN 120

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
             +Y  ++TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF 
Sbjct: 121 TTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFW 180

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
               MG+ P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 181 GMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 225



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 154/327 (47%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +QR    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 8   RQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDY 67

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  
Sbjct: 68  SKAIS----IFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 122

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +
Sbjct: 123 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 182

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG     
Sbjct: 183 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 242

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + GV  D   ++ +
Sbjct: 243 EKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTM 302

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  +++   +P
Sbjct: 303 IVAYERAGLVAHAKRLLHELKRPDNIP 329



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 148/360 (41%), Gaps = 42/360 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEM+ +G  P+ + Y+ L+T ++     
Sbjct: 78  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVEN--- 134

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 135 -KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 193

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 194 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 253

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           S   +P+ IT++ +I  +GK    D+   +F+ L  S  +     F +MI+ Y +A L  
Sbjct: 254 SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVA 313

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++      P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 314 HAKRLLHELK----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKNIAVFERMI 369

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
                         +F+    +G  PDS+   ++  AY K    +    +   M++ G V
Sbjct: 370 HLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEMQEVGCV 429


>gi|357462685|ref|XP_003601624.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490672|gb|AES71875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 150/350 (42%), Gaps = 33/350 (9%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH-------- 58
           Y     +Y+ +I  + +  Q +LA  LF EM   G  PD   Y+ LIT H          
Sbjct: 156 YSPSLNVYNVVIRNVLRAKQWQLAHGLFDEMLQKGLSPDKYTYSTLIT-HFSKQGLFDSS 214

Query: 59  -------TRDKAKA-----------------LAKALGYFQKMKGMERCKPNIVTYNILLR 94
                   RD                      +KA+  F  +KG     P+++  N+++ 
Sbjct: 215 FFWLQQMERDNVSGDLVLYSNLIELSRKLCDYSKAISIFNALKGSGNIVPDLIACNMMIS 274

Query: 95  ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
              +A+   +   L +E+ ++ + P   +Y+ ++  Y  N    E  S+ S M   +C  
Sbjct: 275 VYGKAKLFREARLLLQEMRDNGVNPSTASYSTLLAIYVDNQKFVEAVSLFSEMNEVECPI 334

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           D+ T N++ID YG+ Q   + +  F  +     +P + ++N+++  YG+A L G+A ++F
Sbjct: 335 DLTTCNIMIDVYGQLQMIKEADCFFWGMRKMGIEPNVVSYNTVLRVYGEAGLFGEAVHLF 394

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
             M       + +TY  +I++YG      +A  +  E+   G      T + ++  +   
Sbjct: 395 SLMQMKGVPQNVVTYNTMISIYGKSLEHDKATNLIQEMQSRGIQPNAITYSTIISIWEKA 454

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           G    A +LF      GV  D   Y+ +  AY KA +    ++LL  ++Q
Sbjct: 455 GKLDRAAMLFHKLRTSGVKIDEILYQTMIVAYQKAGLVAHAKRLLNELKQ 504



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 125/264 (47%), Gaps = 1/264 (0%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           ++L     M  + +  P++  YN+++R   +A+     + LF E+ +  L+PD YTY+ +
Sbjct: 142 RSLAILDWMNEIAQYSPSLNVYNVVIRNVLRAKQWQLAHGLFDEMLQKGLSPDKYTYSTL 201

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +  + K G+       L +M+ +    D++ ++ LI+   K   + K   +F +L  S  
Sbjct: 202 ITHFSKQGLFDSSFFWLQQMERDNVSGDLVLYSNLIELSRKLCDYSKAISIFNALKGSGN 261

Query: 188 -KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P L   N MI  YGKA+L  +A  + Q+M      PS  +Y  ++ +Y        A 
Sbjct: 262 IVPDLIACNMMISVYGKAKLFREARLLLQEMRDNGVNPSTASYSTLLAIYVDNQKFVEAV 321

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +F E++++   + ++T N M++ Y    +  EAD  F     MG+ P+  +Y  + + Y
Sbjct: 322 SLFSEMNEVECPIDLTTCNIMIDVYGQLQMIKEADCFFWGMRKMGIEPNVVSYNTVLRVY 381

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            +A +      L   M+  G+  N
Sbjct: 382 GEAGLFGEAVHLFSLMQMKGVPQN 405



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 149/350 (42%), Gaps = 37/350 (10%)

Query: 17  LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
           +I+V GK    R A  L  EMR++G  P  + Y+ L+  ++      +   +A+  F +M
Sbjct: 272 MISVYGKAKLFREARLLLQEMRDNGVNPSTASYSTLLAIYVDN----QKFVEAVSLFSEM 327

Query: 77  KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
             +E C  ++ T NI++    Q + + + +  F  + +  + P++ +YN V+  YG+ G+
Sbjct: 328 NEVE-CPIDLTTCNIMIDVYGQLQMIKEADCFFWGMRKMGIEPNVVSYNTVLRVYGEAGL 386

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
             E   + S M+      +++T+N +I  YGK    DK   + + +     +P   T+++
Sbjct: 387 FGEAVHLFSLMQMKGVPQNVVTYNTMISIYGKSLEHDKATNLIQEMQSRGIQPNAITYST 446

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC----------------D 240
           +I  + KA    +A  +F K+         I Y+ +I  Y                   D
Sbjct: 447 IISIWEKAGKLDRAAMLFHKLRTSGVKIDEILYQTMIVAYQKAGLVAHAKRLLNELKQPD 506

Query: 241 NVSR---------------AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
           NVSR               A  +F +    G+   +S    +++ +           +FE
Sbjct: 507 NVSRETAITILARAGKVDEAMWVFRQAFDAGEVKDISVFGCIIDIFSRERKYAHVVEVFE 566

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV-PNKRFF 334
               +G  PDS+   L+  A+ K    E    L K+M + G V P++  F
Sbjct: 567 KMREVGHFPDSNVIALVLNAFGKLRKFERADALYKQMYEEGCVFPDEVHF 616



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 83/169 (49%), Gaps = 9/169 (5%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I++  K G+   A  LF ++R SG + D  +Y  +I A+     KA  +A A    
Sbjct: 444 YSTIISIWEKAGKLDRAAMLFHKLRTSGVKIDEILYQTMIVAY----QKAGLVAHAKRLL 499

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            ++K     +P+ V+    +   A+A  VD+   +F++  ++    DI  +  ++D + +
Sbjct: 500 NELK-----QPDNVSRETAITILARAGKVDEAMWVFRQAFDAGEVKDISVFGCIIDIFSR 554

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
                 +  V  +M+     PD     L+++++GK + F++ + ++K +
Sbjct: 555 ERKYAHVVEVFEKMREVGHFPDSNVIALVLNAFGKLRKFERADALYKQM 603


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 144/330 (43%), Gaps = 13/330 (3%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R +I D   Y+ +I  + K G+       F EMRN G  PD   Y ALI   +    KA
Sbjct: 215 ERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFM----KA 270

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           K + KA   +++M        + VTYNI+L    +A  V +  A F  + E      + T
Sbjct: 271 KMIPKAHRVYRQML-QSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVT 329

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ +MD +   G +     +  RM    C+P+++++N++I    +     K    F+ L+
Sbjct: 330 YSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLL 389

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYV--FQKMTAMKYTPSFITYECIITMYGYC-- 239
             +  P + TFN+ +    + RL   ++ V  F+ M +   +P+  +Y   I M G C  
Sbjct: 390 QRRLCPDVYTFNAFLHGLCQ-RLDTVSDGVELFESMVSQGTSPNLHSYS--ILMDGICRA 446

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             +  A EIF E+   G    V   N ++   C+ G   EA  +F         PD+ +Y
Sbjct: 447 GGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRS-APDAWSY 505

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             L    ++    E  + L   M+  G  P
Sbjct: 506 WSLLDGLSRCERMEEARLLSFHMKLQGCAP 535



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 152/363 (41%), Gaps = 48/363 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKALAKALG 71
           Y+ +I  + K G+   A  +F +M  +GCRPD  VY ALI     +   ++A AL K   
Sbjct: 115 YTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEA- 173

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFK-ELHESILAPDIYTYNGVMDA 130
                K      P++VTY  L+    +A  + +   +F  E  E    PD  TY  ++D 
Sbjct: 174 --NARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDG 231

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             K G ++E       M++   +PD +T+  LID + K +   K  +V++ ++ S    +
Sbjct: 232 LCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVS 291

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREI 248
             T+N ++    KA    +A   F  M       + +TY  +  M G+C   NVS A E+
Sbjct: 292 TVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSAL--MDGFCSEGNVSAAVEL 349

Query: 249 FDE-------------------LSKLGKDMK----------------VSTLNAMLEAYCM 273
           F                     L + GK  K                V T NA L   C 
Sbjct: 350 FRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQ 409

Query: 274 NGLPTEAD--LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             L T +D   LFE+  + G +P+  +Y +L     +A   E+  ++ + M   G+ P+ 
Sbjct: 410 R-LDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDV 468

Query: 332 RFF 334
             F
Sbjct: 469 VVF 471



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 137/338 (40%), Gaps = 59/338 (17%)

Query: 40  SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME--RCKPNIVTYNILLRACA 97
           +GC PD   YN  I        KA+ +  A   FQ +K M+  +C P  VTY  L+    
Sbjct: 36  AGCEPDYVTYNVFIDGLC----KAERVDDA---FQLLKKMDEKKCLPTTVTYTALVDGLL 88

Query: 98  QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
           +A  +D+  A+ +++ E   +P + TY  V+D   K G ++E   +   M  N C+PD  
Sbjct: 89  KAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAF 148

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSL----MHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
            +  LI    K    ++   ++K       H+   P + T+ S+I    KA    +A  V
Sbjct: 149 VYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQV 208

Query: 214 FQKMTAMK-YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           F      + + P  +TY  II                D L KLG+          +E  C
Sbjct: 209 FDDEAVERGFIPDAVTYTSII----------------DGLCKLGR----------VEEGC 242

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK- 331
                      F    N G  PD+ TY  L   + KA M     ++ ++M Q+G V +  
Sbjct: 243 ER---------FHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTV 293

Query: 332 --RFFLEAL-------ETFSSSLAGSQSGSAKTDLTRS 360
                L+ L       E +++ LA  + G   T +T S
Sbjct: 294 TYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYS 331



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 5/218 (2%)

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
           +PD+  +  V++   +   + E  SVL R     C+PD +T+N+ ID   K +  D   Q
Sbjct: 4   SPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQ 63

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           + K +   K  PT  T+ +++    KA    +A  V ++M     +P+  TY  +I    
Sbjct: 64  LLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLS 123

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS----HNMGVT 293
               V  AR IF ++   G         A+++  C +G P EA  L++ +    H+    
Sbjct: 124 KAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAV 183

Query: 294 PDSSTYKLLYKAYTKAN-MKELVQKLLKRMEQNGIVPN 330
           PD  TY  L     KA  + E  Q       + G +P+
Sbjct: 184 PDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPD 221



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 7/197 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R  +A    YS L+     +G    A+ LF  M + GC P+   YN +I        +
Sbjct: 319 EERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLC----R 374

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDI 121
           A  LAKA  YF+K+     C P++ T+N  L   C +   V     LF+ +     +P++
Sbjct: 375 AGKLAKAYFYFEKLLQRRLC-PDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNL 433

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           ++Y+ +MD   + G ++    +   M S    PD++ FN LI         D+  +VF+ 
Sbjct: 434 HSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRE 493

Query: 182 LMHSKEKPTLPTFNSMI 198
           L   +  P   ++ S++
Sbjct: 494 L-ERRSAPDAWSYWSLL 509


>gi|255661174|gb|ACU25756.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 426

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 154/327 (47%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +  +L  E+  + + PD  
Sbjct: 61  SKAIS----IFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTA 115

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV + M+  +C  D+ T N++ID YG+     + +++F  +
Sbjct: 116 SYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 175

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG     
Sbjct: 176 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 235

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + GV  D   Y+ +
Sbjct: 236 EKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTM 295

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  +++   +P
Sbjct: 296 IVAYERAGLVAHAKRLLHELKRPDNIP 322



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 107/217 (49%)

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
           E  L+PD YTY+ ++  +GK G+     S L +M+ ++   D++ ++ LI+   K   + 
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           K   +F  L  S   P L  +N+MI  +GKA+L  +A  +  +M     TP   +Y  ++
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTLL 121

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
           TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF     MG+ 
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 218



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 149/360 (41%), Gaps = 42/360 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEMR +G  PD + Y+ L+T ++     
Sbjct: 71  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTLLTMYVEN--- 127

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 128 -KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 187 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           +   +P+ IT++ +I  +GK    D+   +F+ L  S        + +MI+ Y +A L  
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVA 306

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++      P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 307 HAKRLLHELK----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMI 362

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             +           +F+    +G  PDS+   L+  AY K +  +    +   M++ G V
Sbjct: 363 HLFSKYKKYGNVVEVFDEMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVGCV 422


>gi|410110113|gb|AFV61136.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           filifolia]
          Length = 439

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 142/302 (47%), Gaps = 5/302 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF EMR     PD   Y+ LIT H     K      AL + QKM+  ++   ++V Y+ L
Sbjct: 2   LFDEMRRRALSPDRYTYSTLIT-HF---GKEGLFDAALSWLQKME-QDQVPGDLVLYSNL 56

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +  +  +  ++F  L  S   PD+  YN +++ +GK  + +E  S++S MK+   
Sbjct: 57  IELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGV 116

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+  +  +A+ 
Sbjct: 117 MPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 176

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T N+M+  Y 
Sbjct: 177 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 236

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
                 +A+ L +   + G+ P+S TY  +   + K    +    L +++  +G+  ++ 
Sbjct: 237 KTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQI 296

Query: 333 FF 334
            F
Sbjct: 297 LF 298



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 110/224 (49%)

Query: 107 ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
            LF E+    L+PD YTY+ ++  +GK G+     S L +M+ +Q   D++ ++ LI+  
Sbjct: 1   GLFDEMRRRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELS 60

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
            K   + K   +F  L  S   P L  +N+MI  +GKA+L  +A  +  +M      P+ 
Sbjct: 61  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNT 120

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
            +Y  ++TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF  
Sbjct: 121 TSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              MG+ P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 224



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 154/327 (47%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 7   RRRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDY 66

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P++V YN ++    +A+   +  +L  E+  + + P+  
Sbjct: 67  SKAIS----IFSRLK-RSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 121

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV S M+  +C  D+ T N++ID YG+     + +++F  +
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 181

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG     
Sbjct: 182 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 241

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + GV  D   ++ +
Sbjct: 242 EKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTM 301

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY +A +    ++LL  +++   +P
Sbjct: 302 IVAYERAGLVAHAKRLLHELKRPDNIP 328



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 148/360 (41%), Gaps = 42/360 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEM+ +G  P+ + Y+ L+T ++     
Sbjct: 77  KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVEN--- 133

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 134 -KKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 192

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 193 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 252

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           S   +P+ IT++ +I  +GK    D+   +F+ L  S  +     F +MI+ Y +A L  
Sbjct: 253 SRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVA 312

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++      P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 313 HAKRLLHELK----RPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMI 368

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
                    +    +F+    +G  PDS    ++  AY K    +    +   M++ G V
Sbjct: 369 HLLSKYKKXSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVGCV 428


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 150/332 (45%), Gaps = 22/332 (6%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y     +++ LI V  ++G+   A+ L  EM+++    D  +YN  I        K   +
Sbjct: 233 YEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCF----GKVGKV 288

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             A  +F ++K  +   P+ VT+  ++    +A  VD+   LF+EL  +   P +Y YN 
Sbjct: 289 DMAWKFFHELKS-QGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNT 347

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  YG  G   E  S+L R K   C P +I +N ++   G++   ++  ++ ++ M   
Sbjct: 348 MIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEA-MKMD 406

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT---PSFITYECIITMYGYCDNVS 243
             P L ++N +I    KA   G+ E   +   +MK     P+ IT   +I        + 
Sbjct: 407 AAPNLTSYNILIDMLCKA---GELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLD 463

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP-----TEADLLFENSHNMGVTPDSST 298
            A  IF     LG D KV T +++     ++GL       +A +L+E   + G TP++  
Sbjct: 464 EACSIF-----LGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVV 518

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y  L + + K   KE   K+ K M   G  P+
Sbjct: 519 YTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPD 550



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 152/344 (44%), Gaps = 10/344 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--LHTR 60
           K +  + D   ++ +I V+ K  +   A+ LF E+ ++   P    YN +I  +  +   
Sbjct: 299 KSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKF 358

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           ++A +L +     QK KG   C P+++ YN +L    +   V++   + + +     AP+
Sbjct: 359 NEAYSLLER----QKRKG---CIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDA-APN 410

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + +YN ++D   K G ++    V   MK     P+IIT N++ID   K Q  D+   +F 
Sbjct: 411 LTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFL 470

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            L H    P   TF S+I   G+      A  +++KM     TP+ + Y  +I  +  C 
Sbjct: 471 GLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCG 530

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
                 +I+ E+   G    +  LN  ++     G   +   LFE     G+TPD  +Y 
Sbjct: 531 RKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYS 590

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           +L     K    +   KL   M++ G+  + R +   ++ F  S
Sbjct: 591 ILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKS 634



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 148/326 (45%), Gaps = 8/326 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K +    D   YS LI  + K G ++    LF EM+  G   D   YN +I        K
Sbjct: 578 KAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFC----K 633

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +  + KA    ++MK  +  +P +VTY  ++   A+   +D+   LF+E     +  ++ 
Sbjct: 634 SGKVNKAYQLLEEMK-TKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVV 692

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            Y+ ++D +GK G I E   +L  +      P+  T+N L+D+  K +  D+    F+++
Sbjct: 693 VYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNM 752

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
            + K  P   T++ M+    K R   KA   +Q+M      P+ ITY  +I+      NV
Sbjct: 753 KNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNV 812

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A+++F+     G     +  NAM+E         +A +LFE +   G    S T  +L
Sbjct: 813 LEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFEETRLKGCRIYSKTCVVL 872

Query: 303 YKAYTKANMKE---LVQKLLKRMEQN 325
             A  KA+  E   +V  +L+ M ++
Sbjct: 873 LDALHKADCLEQAAIVGAVLREMAKS 898



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 144/322 (44%), Gaps = 7/322 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D+  +  LI  +G+ G+   A  L+ +M +SG  P+  VY +LI      R+  K   K 
Sbjct: 480 DSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLI------RNFFKCGRKE 533

Query: 70  LGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
            G+    + M R C P+++  N  +    +A  +++  ALF+E+    L PD+ +Y+ ++
Sbjct: 534 DGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILI 593

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
               K G  K+   +   MK      D   +N++ID + K    +K  Q+ + +     +
Sbjct: 594 HGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQ 653

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           PT+ T+ S+I    K     +A  +F++  +     + + Y  +I  +G    +  A  I
Sbjct: 654 PTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLI 713

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            +EL + G      T N +L+A        EA + F+N  N+   P+  TY ++     K
Sbjct: 714 LEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCK 773

Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
                      + M++ G+ PN
Sbjct: 774 VRKFNKAFVFWQEMQKQGLKPN 795



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/332 (20%), Positives = 143/332 (43%), Gaps = 5/332 (1%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ LI    K G+      ++ EM + GC PD      L+  ++    KA  + K    
Sbjct: 518 VYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDL----MLLNNYMDCVFKAGEIEKGRAL 573

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F+++K  +   P++ +Y+IL+    +         LF E+ E  L  D   YN V+D + 
Sbjct: 574 FEEIKA-QGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFC 632

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K+G + +   +L  MK+   +P ++T+  +ID   K    D+   +F+          + 
Sbjct: 633 KSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVV 692

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            ++S+I  +GK     +A  + +++     TP+  T+ C++      + +  A   F  +
Sbjct: 693 VYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNM 752

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
             L       T + M+   C      +A + ++     G+ P++ TY  +     +    
Sbjct: 753 KNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNV 812

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
              + L +R + +G +P+   +   +E  S++
Sbjct: 813 LEAKDLFERFKSSGGIPDSACYNAMIEGLSNA 844



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 136/316 (43%), Gaps = 6/316 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I   G  G+   A  L    +  GC P    YN ++T  L  + K +   +AL   
Sbjct: 345 YNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTC-LGRKGKVE---EALRIL 400

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + MK M+   PN+ +YNIL+    +A  ++    +   + E+ L P+I T N ++D   K
Sbjct: 401 EAMK-MD-AAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCK 458

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              + E  S+   +    C PD +TF  LID  G+    +    +++ ++ S + P    
Sbjct: 459 AQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVV 518

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + S+I N+ K   +     ++++M     +P  +     +        + + R +F+E+ 
Sbjct: 519 YTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIK 578

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V + + ++      G   +   LF      G+  D+  Y ++   + K+    
Sbjct: 579 AQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVN 638

Query: 314 LVQKLLKRMEQNGIVP 329
              +LL+ M+  G+ P
Sbjct: 639 KAYQLLEEMKTKGLQP 654



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 135/300 (45%), Gaps = 10/300 (3%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           QK++  I     Y+ ++  +G+KG+   A+ +   M+     P+ + YN LI        
Sbjct: 368 QKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDAA-PNLTSYNILIDMLC---- 422

Query: 62  KAKALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
           KA  L  AL     MK  G+    PNI+T NI++    +A+ +D+  ++F  L   +  P
Sbjct: 423 KAGELEAALKVQDSMKEAGL---FPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTP 479

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D  T+  ++D  G++G + +   +  +M  +   P+ + +  LI ++ K    +   +++
Sbjct: 480 DSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIY 539

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           K +MH    P L   N+ +    KA    K   +F+++ A   TP   +Y  +I      
Sbjct: 540 KEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKG 599

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
                  ++F E+ + G  +     N +++ +C +G   +A  L E     G+ P   TY
Sbjct: 600 GFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTY 659



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 128/295 (43%), Gaps = 8/295 (2%)

Query: 16  KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQK 75
           +++A   K  + R A  +   MR    RP  S Y  LI A L    +A  +   L   Q+
Sbjct: 172 EMVASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGA-LSAAHEADPMLTLLRQMQE 230

Query: 76  MKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG 135
           + G E     +  +  L+   A+   VD   +L  E+  +    D+  YN  +D +GK G
Sbjct: 231 I-GYE---VTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVG 286

Query: 136 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195
            +         +KS    PD +TF  +I    K +  D+  ++F+ L  +K  P +  +N
Sbjct: 287 KVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYN 346

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
           +MI+ YG      +A  + ++       PS I Y CI+T  G    V  A  I + + K+
Sbjct: 347 TMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAM-KM 405

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENS-HNMGVTPDSSTYKLLYKAYTKA 309
                +++ N +++  C  G   EA L  ++S    G+ P+  T  ++     KA
Sbjct: 406 DAAPNLTSYNILIDMLCKAG-ELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKA 459



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/301 (20%), Positives = 117/301 (38%), Gaps = 13/301 (4%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+  F EM      P P +   +I        + K +  AL YF+ ++   +   +   Y
Sbjct: 89  ALNTFDEM------PQPELVVGVIR-------RLKDVRVALHYFRWVERKTKQLHSPEAY 135

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           N LL   A+ RN++ +  + +E+  +   P   T   ++ ++ K+  ++E   V+  M+ 
Sbjct: 136 NALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETMRK 195

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
            + +P    +  LI +       D M  + + +     + T+  F ++I  + +      
Sbjct: 196 FKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDA 255

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  +  +M +  +    + Y   I  +G    V  A + F EL   G      T  +M+ 
Sbjct: 256 ALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIG 315

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             C      EA  LFE   +    P    Y  +   Y           LL+R ++ G +P
Sbjct: 316 VLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIP 375

Query: 330 N 330
           +
Sbjct: 376 S 376


>gi|357134934|ref|XP_003569069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Brachypodium distachyon]
          Length = 642

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 138/314 (43%), Gaps = 5/314 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  Y+ ++    K  + R+A  + + M   GC P+   +  L+       D  K +  A
Sbjct: 261 DTVAYTSIVGAFCKARELRMACAILARMVTEGCVPNVQTFTVLVKGFF---DDGK-VHDA 316

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           LG +  M   E   P+ ++YN+L+R      ++ +   +F  + +S   PD+ TY+ ++D
Sbjct: 317 LGMWNWMVA-EGWAPSTISYNVLIRGLCHIGDLKRALFVFSCMGKSDCLPDVRTYSTLID 375

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            + K G +    S+ + M +  CKP+++ +  ++D   K+  FD+ E +   +      P
Sbjct: 376 GFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMVDVLCKKVMFDQAENLIDKMSLENCPP 435

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              TFN++I +       G+A  VF  M      P+  TY  ++       N   A  + 
Sbjct: 436 NTLTFNTLIRSLCDLGRAGRALNVFHGMRRYGCPPNDRTYNELLHGLFREGNCEDALRML 495

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+   G ++ + + N  +   C   +  EA +L       G+ PD+ T+  +  AY K 
Sbjct: 496 TEMLNHGFELSLVSYNTTISGLCQMRMIKEAMILLGRMIIQGIQPDAFTFNAIIHAYCKE 555

Query: 310 NMKELVQKLLKRME 323
                   +L RM+
Sbjct: 556 GNVRAAAWMLGRMD 569



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 129/321 (40%), Gaps = 5/321 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ ++  +  + + R    +  EM + G RPD   Y +++ A      KA+ L  A    
Sbjct: 230 YNAVVHALCGQFRMREVFLVVDEMVHRGLRPDTVAYTSIVGAFC----KARELRMACAIL 285

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   E C PN+ T+ +L++       V     ++  +     AP   +YN ++     
Sbjct: 286 ARMV-TEGCVPNVQTFTVLVKGFFDDGKVHDALGMWNWMVAEGWAPSTISYNVLIRGLCH 344

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +K    V S M  + C PD+ T++ LID + K    D    ++  + ++  KP +  
Sbjct: 345 IGDLKRALFVFSCMGKSDCLPDVRTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVV 404

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + +M+    K  +  +AE +  KM+     P+ +T+  +I          RA  +F  + 
Sbjct: 405 YTNMVDVLCKKVMFDQAENLIDKMSLENCPPNTLTFNTLIRSLCDLGRAGRALNVFHGMR 464

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G      T N +L      G   +A  +     N G      +Y        +  M +
Sbjct: 465 RYGCPPNDRTYNELLHGLFREGNCEDALRMLTEMLNHGFELSLVSYNTTISGLCQMRMIK 524

Query: 314 LVQKLLKRMEQNGIVPNKRFF 334
               LL RM   GI P+   F
Sbjct: 525 EAMILLGRMIIQGIQPDAFTF 545



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 134/327 (40%), Gaps = 12/327 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI  + +  +   A  +  EM   GCRPD   +  +I+A      K   L +A G  
Sbjct: 165 YNLLIKALCQNDRVGAARRMLDEMARKGCRPDEVSHTTIISALC----KLDRLDEARGIL 220

Query: 74  QKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
            +M       P   +YN ++ A C Q R + +V  +  E+    L PD   Y  ++ A+ 
Sbjct: 221 AEMT------PVGASYNAVVHALCGQFR-MREVFLVVDEMVHRGLRPDTVAYTSIVGAFC 273

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K   ++   ++L+RM +  C P++ TF +L+  +           ++  ++     P+  
Sbjct: 274 KARELRMACAILARMVTEGCVPNVQTFTVLVKGFFDDGKVHDALGMWNWMVAEGWAPSTI 333

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           ++N +I          +A +VF  M      P   TY  +I  +    ++  A  I++++
Sbjct: 334 SYNVLIRGLCHIGDLKRALFVFSCMGKSDCLPDVRTYSTLIDGFSKAGDLDVAMSIWNDM 393

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
           +  G    V     M++  C   +  +A+ L +        P++ T+  L ++       
Sbjct: 394 TNAGCKPNVVVYTNMVDVLCKKVMFDQAENLIDKMSLENCPPNTLTFNTLIRSLCDLGRA 453

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALE 339
                +   M + G  PN R + E L 
Sbjct: 454 GRALNVFHGMRRYGCPPNDRTYNELLH 480



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/322 (19%), Positives = 134/322 (41%), Gaps = 10/322 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+ L+  + ++      + ++  MR +G  P+   YN LI A L   D+  A  + L  
Sbjct: 129 VYNHLLDALLRENLVAAVVPVYDNMRKAGVEPNVYTYNLLIKA-LCQNDRVGAARRMLDE 187

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
             + KG   C+P+ V++  ++ A  +   +D+   +  E     + P   +YN V+ A  
Sbjct: 188 MAR-KG---CRPDEVSHTTIISALCKLDRLDEARGILAE-----MTPVGASYNAVVHALC 238

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
               ++E+  V+  M     +PD + +  ++ ++ K +       +   ++     P + 
Sbjct: 239 GQFRMREVFLVVDEMVHRGLRPDTVAYTSIVGAFCKARELRMACAILARMVTEGCVPNVQ 298

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           TF  ++  +        A  ++  M A  + PS I+Y  +I    +  ++ RA  +F  +
Sbjct: 299 TFTVLVKGFFDDGKVHDALGMWNWMVAEGWAPSTISYNVLIRGLCHIGDLKRALFVFSCM 358

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
            K      V T + +++ +   G    A  ++ +  N G  P+   Y  +     K  M 
Sbjct: 359 GKSDCLPDVRTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMVDVLCKKVMF 418

Query: 313 ELVQKLLKRMEQNGIVPNKRFF 334
           +  + L+ +M      PN   F
Sbjct: 419 DQAENLIDKMSLENCPPNTLTF 440



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/305 (20%), Positives = 123/305 (40%), Gaps = 10/305 (3%)

Query: 6   WYIAD-----TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           W +A+     T  Y+ LI  +   G  + A+++FS M  S C PD   Y+ LI       
Sbjct: 322 WMVAEGWAPSTISYNVLIRGLCHIGDLKRALFVFSCMGKSDCLPDVRTYSTLIDGF---- 377

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            KA  L  A+  +  M     CKPN+V Y  ++    +    DQ   L  ++      P+
Sbjct: 378 SKAGDLDVAMSIWNDMTN-AGCKPNVVVYTNMVDVLCKKVMFDQAENLIDKMSLENCPPN 436

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
             T+N ++ +    G      +V   M+   C P+  T+N L+    +    +   ++  
Sbjct: 437 TLTFNTLIRSLCDLGRAGRALNVFHGMRRYGCPPNDRTYNELLHGLFREGNCEDALRMLT 496

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            +++   + +L ++N+ I    + R+  +A  +  +M      P   T+  II  Y    
Sbjct: 497 EMLNHGFELSLVSYNTTISGLCQMRMIKEAMILLGRMIIQGIQPDAFTFNAIIHAYCKEG 556

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           NV  A  +   +  +     +    +++   C      +A +        G+ P+ +T+ 
Sbjct: 557 NVRAAAWMLGRMDAVNCPRNIVAYTSLMSGLCSQHKLDDAMVYLLKMLYEGICPNEATWN 616

Query: 301 LLYKA 305
           +L + 
Sbjct: 617 VLVRG 621



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/322 (19%), Positives = 123/322 (38%), Gaps = 35/322 (10%)

Query: 62  KAKALAKALGYFQKMKGMERCK-PNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           +A A  +AL  F + +    C  P +  YN LL A  +   V  V  ++  + ++ + P+
Sbjct: 102 RAGAADRALKTFYRARHDLGCAAPTVRVYNHLLDALLRENLVAAVVPVYDNMRKAGVEPN 161

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD------- 173
           +YTYN ++ A  +N  +     +L  M    C+PD ++   +I +  K    D       
Sbjct: 162 VYTYNLLIKALCQNDRVGAARRMLDEMARKGCRPDEVSHTTIISALCKLDRLDEARGILA 221

Query: 174 --------------------KMEQVF---KSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
                               +M +VF     ++H   +P    + S++  + KAR    A
Sbjct: 222 EMTPVGASYNAVVHALCGQFRMREVFLVVDEMVHRGLRPDTVAYTSIVGAFCKARELRMA 281

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAML 268
             +  +M      P+  T+  ++   G+ D+  V  A  +++ +   G      + N ++
Sbjct: 282 CAILARMVTEGCVPNVQTFTVLVK--GFFDDGKVHDALGMWNWMVAEGWAPSTISYNVLI 339

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
              C  G    A  +F         PD  TY  L   ++KA   ++   +   M   G  
Sbjct: 340 RGLCHIGDLKRALFVFSCMGKSDCLPDVRTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCK 399

Query: 329 PNKRFFLEALETFSSSLAGSQS 350
           PN   +   ++     +   Q+
Sbjct: 400 PNVVVYTNMVDVLCKKVMFDQA 421


>gi|255661136|gb|ACU25737.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 426

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 154/327 (47%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K      P+IV YN ++    +A+   +  +L  E+  + + P+  
Sbjct: 61  SKAIS----IFSRLK-RSGFTPDIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTA 115

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV + M+  +C  D+ T N++ID YG+     + +++F  +
Sbjct: 116 SYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 175

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG     
Sbjct: 176 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 235

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + GV  D   Y+ +
Sbjct: 236 EKANNLIQEMQNRGIEPNSITYSTIISIWSKVGKLDRAAMLFQKLRSSGVDIDQVLYQTM 295

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY KA +    ++LL  +++   +P
Sbjct: 296 IVAYEKAGLVAHAKRLLHELKRPDNIP 322



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 108/217 (49%)

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
           E  L+PD YTY+ ++  +GK G+     S L +M+ ++   D++ ++ LI+   K   + 
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           K   +F  L  S   P +  +N+MI  +GKA+L  +A  +  +M     TP+  +Y  ++
Sbjct: 62  KAISIFSRLKRSGFTPDIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
           TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF     MG+ 
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 218



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 147/360 (40%), Gaps = 42/360 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEMR +G  P+ + Y+ L+T ++     
Sbjct: 71  KRSGFTPDIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN--- 127

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 128 -KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 187 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           +   +P+ IT++ +I  + K    D+   +F+ L  S        + +MI+ Y KA L  
Sbjct: 247 NRGIEPNSITYSTIISIWSKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYEKAGLVA 306

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++      P  I    ++        +  A  +F +    G+   ++    M+
Sbjct: 307 HAKRLLHELKRPDNIPRDIAIHILVG----AGRIEEATWVFRQAIDAGEVKDITVFERMI 362

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             +           +F+    +G  PDS+   L+  AY K +  +    +   M++ G V
Sbjct: 363 HLFSKYKKYGNVVEVFDKMCGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEMQEVGCV 422


>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
          Length = 1563

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 145/328 (44%), Gaps = 42/328 (12%)

Query: 14   YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
            ++ L+    K G    A+  F+ M + GC+PD   ++ +I+    +  K +   +A  +F
Sbjct: 1216 FTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVIS----SLSKKRRAIEAQSFF 1271

Query: 74   QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
              +K  +R +P++V Y  L+    +A N+ +   +F E+  + + P++YTY+ V+DA  +
Sbjct: 1272 DSLK--DRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCR 1329

Query: 134  NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            +G I     V S M    C P+ ITFN L+  + K    +K+ Q                
Sbjct: 1330 SGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQ---------------- 1373

Query: 194  FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
                               V+ +M  +   P  ITY  +I  +   DN+  A +I + + 
Sbjct: 1374 -------------------VYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVK 1414

Query: 254  KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
            K G ++  S+ N +       G    A  +F    ++   P++ TY +L + +      +
Sbjct: 1415 K-GCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTD 1473

Query: 314  LVQKLLKRMEQNGIVPNKRFFLEALETF 341
            +V KL K M++N I PN   +   + TF
Sbjct: 1474 MVLKLRKEMDENEIEPNANTYRVLISTF 1501



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 113/254 (44%), Gaps = 2/254 (0%)

Query: 66   LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
              + L +F     +E    +   Y  ++    + R  D    L   +    +   + T+ 
Sbjct: 1158 FPQTLAFFNWATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFT 1217

Query: 126  GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
             ++  Y K G+  E     +RM+   CKPD I F+++I S  K++   + +  F SL   
Sbjct: 1218 ILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSL-KD 1276

Query: 186  KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
            + +P +  + S++  + +A    +AE VF +M      P+  TY  +I        ++RA
Sbjct: 1277 RFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQITRA 1336

Query: 246  REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             ++F E+  +G D    T N ++  +   G   +   ++     +G  PD+ TY  L ++
Sbjct: 1337 HDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIES 1396

Query: 306  YTK-ANMKELVQKL 318
            + +  N++E V+ L
Sbjct: 1397 HCRDDNLEEAVKIL 1410



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 116/244 (47%), Gaps = 7/244 (2%)

Query: 14   YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
            YS +I  + + GQ   A  +FSEM + GC P+   +N L+  H+    KA    K L  +
Sbjct: 1320 YSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHV----KAGRTEKVLQVY 1375

Query: 74   QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             +MK +  C P+ +TYN L+ +  +  N+++   +   + +     +  ++N +     K
Sbjct: 1376 NQMKRLG-CPPDAITYNFLIESHCRDDNLEEAVKILNSVKKGC-NLNASSFNPIFGCISK 1433

Query: 134  NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
             G +     + ++MK  +C+P+ +T+N+L+  +  +++ D + ++ K +  ++ +P   T
Sbjct: 1434 LGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANT 1493

Query: 194  FNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSFITYECIITMYGYCDNVSRAREIFDEL 252
            +  +I  +        A   F++M   K   PS   YE ++        + +  E+ +++
Sbjct: 1494 YRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKM 1553

Query: 253  SKLG 256
               G
Sbjct: 1554 VNRG 1557


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 128/268 (47%), Gaps = 8/268 (2%)

Query: 81  RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY---GKNGMI 137
           + +PN+ T+N+++ A  +   +++   + +++     +P++ +YN ++D Y   G NG +
Sbjct: 218 KIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKM 277

Query: 138 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 197
            + ++VL  M  N+  P++ TFN+LID + K        +VFK ++     P + T+NS+
Sbjct: 278 YKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSL 337

Query: 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKL 255
           I          +A  +  KM +    P+ ITY  +I   G+C N  +  A ++FD +   
Sbjct: 338 INGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLIN--GFCKNGMMKEALDMFDSVKGQ 395

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
           G        N +++AYC  G   +   L E     G+ PD  TY  L     +    E  
Sbjct: 396 GTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAA 455

Query: 316 QKLLKRMEQNGIVPNKRFFLEALETFSS 343
           +KL  ++   G+ P+   F   +E + S
Sbjct: 456 KKLFDQLTNKGL-PDLVTFHILMEGYCS 482



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 149/316 (47%), Gaps = 13/316 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ +I  + K G+   A  +  +M+  G  P+   YN LI  +       K + KA    
Sbjct: 226 FNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGK-MYKADAVL 284

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M   E   PN+ T+NIL+    +  N+     +FKE+ +  + P++ TYN +++    
Sbjct: 285 KEMVENE-VSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCN 343

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G I E   +  +M S   +P++IT++ LI+ + K     +   +F S+     +PT   
Sbjct: 344 GGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRM 403

Query: 194 FNSMIINYGKARLQGKAEYVF---QKMTAMKYTPSFITYECIITMYGYC--DNVSRAREI 248
           +N +I  Y K    GK +  F   ++M      P   TY C+I   G C   N+  A+++
Sbjct: 404 YNMLIDAYCKL---GKIDDGFALKEEMEREGIVPDVGTYNCLIA--GLCRNGNIEAAKKL 458

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           FD+L+  G    + T + ++E YC  G   +A +L +    MG+ P   TY ++ K Y K
Sbjct: 459 FDQLTNKGLP-DLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCK 517

Query: 309 ANMKELVQKLLKRMEQ 324
               +    +  +ME+
Sbjct: 518 EGNLKAATNMRTQMEK 533



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 132/265 (49%), Gaps = 14/265 (5%)

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           GY+        CKP +V    LL+   Q R+ D V  L+KE+    + P+++T+N V++A
Sbjct: 180 GYYGYKLSAMSCKPLMVA---LLK---QNRSAD-VEYLYKEMIRRKIQPNVFTFNVVINA 232

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM---EQVFKSLMHSKE 187
             K G + +   V+  MK     P+++++N LID Y K     KM   + V K ++ ++ 
Sbjct: 233 LCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEV 292

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRA 245
            P L TFN +I  + K      +  VF++M      P+ ITY  +I   G C+   ++ A
Sbjct: 293 SPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLIN--GLCNGGKINEA 350

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
             + D++   G    + T ++++  +C NG+  EA  +F++    G  P +  Y +L  A
Sbjct: 351 IGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDA 410

Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
           Y K    +    L + ME+ GIVP+
Sbjct: 411 YCKLGKIDDGFALKEEMEREGIVPD 435



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 99/227 (43%), Gaps = 6/227 (2%)

Query: 109 FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS--RMKSNQCKPDIITFNLLIDSY 166
           FK LH    A         +D + +NG   ++ S+     M  N C   II  ++L+ +Y
Sbjct: 105 FKLLHSLANAKRYSKIRSFLDGFVRNGSDHQVHSIFHAISMCDNVCVNSIIA-DMLVLAY 163

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
                F+   + FK   +   K +  +   +++   K       EY++++M   K  P+ 
Sbjct: 164 ANNSRFELGFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVEYLYKEMIRRKIQPNV 223

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM---NGLPTEADLL 283
            T+  +I        +++AR++ +++   G    V + N +++ YC    NG   +AD +
Sbjct: 224 FTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAV 283

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +      V+P+ +T+ +L   + K +      K+ K M    ++PN
Sbjct: 284 LKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPN 330



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 7/185 (3%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T +Y+ LI    K G+      L  EM   G  PD   YN LI      R+     AK L
Sbjct: 401 TRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGL--CRNGNIEAAKKL 458

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
                 KG+    P++VT++IL+          +   L KE+ +  L P   TYN +M  
Sbjct: 459 FDQLTNKGL----PDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKG 514

Query: 131 YGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           Y K G +K   ++ ++M K  + + ++ ++N+L+  Y ++   +    +   ++     P
Sbjct: 515 YCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVP 574

Query: 190 TLPTF 194
              T+
Sbjct: 575 NRITY 579



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 7/156 (4%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D G Y+ LIA + + G    A  LF ++ N G  PD   ++ L+  +  +R +++  A
Sbjct: 433 VPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGL-PDLVTFHILMEGYC-SRGESRKAA 490

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH-ESILAPDIYTYNG 126
             L    KM      KP  +TYNI+++   +  N+     +  ++  E  L  ++ +YN 
Sbjct: 491 MLLKEMSKMG----LKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNV 546

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           ++  Y + G +++   +L+ M      P+ IT+ ++
Sbjct: 547 LLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIV 582



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 4/121 (3%)

Query: 24  KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK 83
           +G++R A  L  EM   G +P    YN ++  +     K   L  A     +M+   R +
Sbjct: 483 RGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYC----KEGNLKAATNMRTQMEKERRLR 538

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
            N+ +YN+LL+  +Q   ++  N L  E+ E  L P+  TY  V +     G + ++E  
Sbjct: 539 MNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDKGFVPDIEGH 598

Query: 144 L 144
           L
Sbjct: 599 L 599


>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 685

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 139/332 (41%), Gaps = 29/332 (8%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVY------------------------ 49
           Y+ +I  + K G    A+ LF  M  + CRP+   Y                        
Sbjct: 342 YNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEVSN 401

Query: 50  ---NALITAHL-HTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQV 105
              N  I A+L  T  K    ++A   F  M             ++L   C   + V+ +
Sbjct: 402 KFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAI 461

Query: 106 NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
             L  ++HE  ++ D   YN V+   GK   +  +  +  +MK +   PDI T+N+LI S
Sbjct: 462 E-LLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISS 520

Query: 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
            G+     +  +VF+ L  S  KP + ++NS+I   GK     +A   F +M      P 
Sbjct: 521 LGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPD 580

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
            +TY  +I  +G  D V  AR +FD +   G    + T N +L+     G   E   L+ 
Sbjct: 581 VVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRTAETVDLYA 640

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
                G+TPDS TY +L +  + +N K  V++
Sbjct: 641 KLREQGLTPDSITYAILDRLQSGSNRKFRVRR 672



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 8/227 (3%)

Query: 6   WYIADTG---IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           W   D G    Y  ++  + + G+T  A+ L S++   G   D  +YN +    L T  K
Sbjct: 433 WSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTV----LSTLGK 488

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K ++     ++KMK  +   P+I TYNIL+ +  +   V +   +F+EL  S   PDI 
Sbjct: 489 LKQVSHLHDLYEKMK-QDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDII 547

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN +++  GKNG + E       M+     PD++T++ LI+ +GK    +    +F  +
Sbjct: 548 SYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRM 607

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
           +     P + T+N ++    +A    +   ++ K+     TP  ITY
Sbjct: 608 ITQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTPDSITY 654



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 142/354 (40%), Gaps = 39/354 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I + GK G+   ++ LF EM   GC P+   YN +I A      K+  + KA
Sbjct: 303 DEYTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQA----LSKSGMVDKA 358

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY----- 124
           +  F  M     C+PN  TY+I+L        + +++ +  E+    +   IY Y     
Sbjct: 359 ILLFCNMIK-NNCRPNEFTYSIILNVLVAEGQLGRLDEVL-EVSNKFINKSIYAYLVRTL 416

Query: 125 ---------------------NGVMDAY-------GKNGMIKEMESVLSRMKSNQCKPDI 156
                                 G  DAY        + G   E   +LS++       D 
Sbjct: 417 SKLGHSSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDT 476

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           + +N ++ + GK +    +  +++ +      P + T+N +I + G+     +A  VF++
Sbjct: 477 MMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEE 536

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           + +    P  I+Y  +I   G   +V  A   F E+   G +  V T + ++E +     
Sbjct: 537 LESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDK 596

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              A  LF+     G  P+  TY +L     +A        L  ++ + G+ P+
Sbjct: 597 VEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTPD 650



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 114/278 (41%), Gaps = 32/278 (11%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           N  TY  LL+A  ++R+ D+   ++ E+  +    DI+ YN ++DA  K+  +     V 
Sbjct: 233 NAYTYRCLLQAHIRSRDSDRAFNVYMEMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVF 292

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             MK   C PD  T+ ++I   GK    ++   +F+ ++     P L  +N+MI    K+
Sbjct: 293 KDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKS 352

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD-------------- 250
            +  KA  +F  M      P+  TY  I+ +      + R  E+ +              
Sbjct: 353 GMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEVSNKFINKSIYAYL 412

Query: 251 --ELSKLGKDMKVSTL----------------NAMLEAYCMNGLPTEADLLFENSHNMGV 292
              LSKLG   +   L                 +MLE+ C  G   EA  L    H  G+
Sbjct: 413 VRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGI 472

Query: 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + D+  Y  +     K      +  L ++M+Q+G  P+
Sbjct: 473 STDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPD 510



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/368 (20%), Positives = 147/368 (39%), Gaps = 72/368 (19%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A  ++ EM ++G + D   YN L+ A      K + L ++   F+ MK ++ C P+  TY
Sbjct: 253 AFNVYMEMWSNGYQLDIFAYNMLLDALA----KDEQLDRSYKVFKDMK-LKHCNPDEYTY 307

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
            I++R   +    ++  ALF+E+      P++  YN ++ A  K+GM+ +   +   M  
Sbjct: 308 TIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIK 367

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFK-------------------SLMHSKEKPT 190
           N C+P+  T++++++         ++++V +                    L HS E   
Sbjct: 368 NNCRPNEFTYSIILNVLVAEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHR 427

Query: 191 L-------------PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           L               + SM+ +  +     +A  +  K+     +   + Y  +++  G
Sbjct: 428 LFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLG 487

Query: 238 YCDNVSRAREIFDE----------------LSKLGKDMKVS------------------- 262
               VS   +++++                +S LG+  KV                    
Sbjct: 488 KLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDII 547

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           + N+++     NG   EA + F    + G+ PD  TY  L + + K +  E+ + L  RM
Sbjct: 548 SYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRM 607

Query: 323 EQNGIVPN 330
              G  PN
Sbjct: 608 ITQGCCPN 615



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 5/160 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ     D   Y+ LI+ +G+ G+ + A+ +F E+ +S C+PD   YN+LI       D 
Sbjct: 503 KQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDV 562

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +A  + L    + KG+    P++VTY+ L+    +   V+   +LF  +      P+I 
Sbjct: 563 DEAHMRFLE--MQDKGL---NPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIV 617

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           TYN ++D   + G   E   + ++++     PD IT+ +L
Sbjct: 618 TYNILLDCLERAGRTAETVDLYAKLREQGLTPDSITYAIL 657



 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 83/202 (41%), Gaps = 17/202 (8%)

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           I ++  +LS+M  +Q +  I T N+LI  +   +  +    + K       +    T+  
Sbjct: 183 IDQVREILSQMDRDQIRGTISTVNILIKIFSSNEDLELCTGLIKKW---DLRLNAYTYRC 239

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           ++  + ++R   +A  V+ +M +  Y      Y  ++      + + R+ ++F       
Sbjct: 240 LLQAHIRSRDSDRAFNVYMEMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVF------- 292

Query: 257 KDMKVSTLNA-------MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           KDMK+   N        M+      G   E+  LFE     G TP+   Y  + +A +K+
Sbjct: 293 KDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKS 352

Query: 310 NMKELVQKLLKRMEQNGIVPNK 331
            M +    L   M +N   PN+
Sbjct: 353 GMVDKAILLFCNMIKNNCRPNE 374


>gi|356534408|ref|XP_003535747.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35130-like [Glycine max]
          Length = 357

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 145/323 (44%), Gaps = 28/323 (8%)

Query: 44  PDPSVYNALITAHLH--TRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN 101
           P   VYNA I   +     DKA+ +      F++MK  + CK    TY +L+    +A  
Sbjct: 4   PSAVVYNAYINGLMKGGNSDKAEEI------FKRMKK-DACKSTTETYTMLINLYGKAGK 56

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
                 LF E+      P+I TY  +++A+ + G+ ++ E V  +M+    +PD+  +N 
Sbjct: 57  SFMALILFHEMTTHKCKPNICTYTALVNAFVREGLCEKAEEVFEQMQEAGLEPDVYAYNA 116

Query: 162 LIDSYGKRQAFDK------MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
           L+++Y     F +        ++F  + H   +P   ++N ++  YGKA  Q  AE VF+
Sbjct: 117 LMETYKFSSPFSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFK 176

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
            M  +  TP+  ++  + + Y    NV++  EI +++ K G  +    L +ML  Y   G
Sbjct: 177 DMKRVGITPTMKSHMVLQSAYSKMGNVNKCEEILNQMCKSGLKLNTYVLKSMLNLYGRLG 236

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN----- 330
              + + +           D STY +L   Y +A   E ++   + +   G+ P+     
Sbjct: 237 QFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGXIERMEDFFQLLPSKGLKPDVVTWT 296

Query: 331 --------KRFFLEALETFSSSL 345
                   K+ +L+ LE F  ++
Sbjct: 297 SRMGAYSXKKLYLKCLEIFEETI 319



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 138/318 (43%), Gaps = 14/318 (4%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +Y+  I  + K G +  A  +F  M+   C+     Y  LI  +     KA     AL  
Sbjct: 8   VYNAYINGLMKGGNSDKAEEIFKRMKKDACKSTTETYTMLINLY----GKAGKSFMALIL 63

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY- 131
           F +M    +CKPNI TY  L+ A  +    ++   +F+++ E+ L PD+Y YN +M+ Y 
Sbjct: 64  FHEMT-THKCKPNICTYTALVNAFVREGLCEKAEEVFEQMQEAGLEPDVYAYNALMETYK 122

Query: 132 -----GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
                 + G       + S M+   C+PD  ++N+L+D+YGK    D  E VFK +    
Sbjct: 123 FSSPFSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVG 182

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             PT+ +   +   Y K     K E +  +M       +    + ++ +YG      +  
Sbjct: 183 ITPTMKSHMVLQSAYSKMGNVNKCEEILNQMCKSGLKLNTYVLKSMLNLYGRLGQFGKME 242

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+   + K      +ST N ++  Y   G     +  F+   + G+ PD  T+     AY
Sbjct: 243 EVLRVMEKGSYVADISTYNILINRYGQAGXIERMEDFFQLLPSKGLKPDVVTWTSRMGAY 302

Query: 307 TKANMKELVQKLLKRMEQ 324
           +    K+L  K L+  E+
Sbjct: 303 SX---KKLYLKCLEIFEE 317



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 139/323 (43%), Gaps = 24/323 (7%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T  Y+ LI + GK G++ +A+ LF EM    C+P+   Y AL+ A +    +     KA 
Sbjct: 41  TETYTMLINLYGKAGKSFMALILFHEMTTHKCKPNICTYTALVNAFV----REGLCEKAE 96

Query: 71  GYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVN------ALFKELHESILAPDIY 122
             F++M+  G+E   P++  YN L+     +    +         +F  +      PD  
Sbjct: 97  EVFEQMQEAGLE---PDVYAYNALMETYKFSSPFSRAGYPYGAAEIFSLMQHMGCEPDRA 153

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++DAYGK G   + E+V   MK     P + +  +L  +Y K    +K E++   +
Sbjct: 154 SYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLQSAYSKMGNVNKCEEILNQM 213

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
             S  K       SM+  YG+    GK E V + M    Y     TY  +I  YG    +
Sbjct: 214 CKSGLKLNTYVLKSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGXI 273

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            R  + F  L   G    V T  + + AY    L  +   +FE       T D+   K+L
Sbjct: 274 ERMEDFFQLLPSKGLKPDVVTWTSRMGAYSXKKLYLKCLEIFEE------TIDA---KVL 324

Query: 303 YKAYTKANMKELVQKLLKRMEQN 325
             A T  +  E V  +++ M ++
Sbjct: 325 LAACTNEDQTEQVTTVIRTMHKD 347



 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 54/128 (42%)

Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
           PS + Y   I       N  +A EIF  + K        T   ++  Y   G    A +L
Sbjct: 4   PSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKSTTETYTMLINLYGKAGKSFMALIL 63

Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
           F         P+  TY  L  A+ +  + E  +++ ++M++ G+ P+   +   +ET+  
Sbjct: 64  FHEMTTHKCKPNICTYTALVNAFVREGLCEKAEEVFEQMQEAGLEPDVYAYNALMETYKF 123

Query: 344 SLAGSQSG 351
           S   S++G
Sbjct: 124 SSPFSRAG 131


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 141/342 (41%), Gaps = 28/342 (8%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  ++ LI  +  +G+   A+ LF +M   G RPD   Y  LI       + + A+   
Sbjct: 130 DTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLL 189

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               QK      C+PN+  YN ++ +  + R V +   LF E+    ++PDI+TYN ++ 
Sbjct: 190 GSMVQK-----NCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIH 244

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A       K + ++L+ M  ++  PD+++FN ++D+  K     +   V   ++    +P
Sbjct: 245 ALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEP 304

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--------- 240
            + T+ +++  +       +A  VF  M      P+ I+Y  +I   GYC          
Sbjct: 305 NVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLIN--GYCKIQRIDKAIH 362

Query: 241 ------------NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
                       N+  A ++FD +   G    V + N ++  YC      +A  LF    
Sbjct: 363 YTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMC 422

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              + PD+ TY  L          +    L   M     +PN
Sbjct: 423 RQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPN 464



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 160/414 (38%), Gaps = 102/414 (24%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  LI  + K G T  A+ L   M    C+P+   YN +I +      K + + +A
Sbjct: 165 DVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLC----KDRQVTEA 220

Query: 70  LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
              F +M  KG+    P+I TYN L+ A         V  L  E+ +S + PD+ ++N V
Sbjct: 221 FNLFSEMVTKGIS---PDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTV 277

Query: 128 MDAYGKNGMIKEMESVLSRM-----------------------------------KSNQC 152
           +DA  K G + E   V+ +M                                       C
Sbjct: 278 VDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGC 337

Query: 153 KPDIITFNLLIDSYGKRQAFDK----------------MEQ---VFKSLMHSKEKPTLPT 193
            P++I++N LI+ Y K Q  DK                M++   VF +++     P + +
Sbjct: 338 MPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVIS 397

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL- 252
           +N++I  Y K +   KA Y+F +M   +  P  +TY  +I    + + +  A  +F E+ 
Sbjct: 398 YNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMV 457

Query: 253 ------------------------------------SKLGKDMKVSTLNAMLEAYCMNGL 276
                                               S L  D++V+  N  ++  C  G 
Sbjct: 458 ACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVN--NIAIDGMCRAGE 515

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              A  LF N  + G+ PD  TY ++     +  + +   KL + M++NG   N
Sbjct: 516 LEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLN 569



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 135/323 (41%), Gaps = 28/323 (8%)

Query: 29  LAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88
            A  + +++   G +PD + +  LI   +    K   + +AL  F KM G E  +P++VT
Sbjct: 114 FAFSVLAKILKLGHQPDTATFTTLIRG-ICVEGK---IGEALHLFDKMIG-EGFRPDVVT 168

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y  L+    +  N      L   + +    P+++ YN ++D+  K+  + E  ++ S M 
Sbjct: 169 YGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMV 228

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           +    PDI T+N LI +      +  +  +   ++ SK  P + +FN+++    K     
Sbjct: 229 TKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVT 288

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNA 266
           +A  V  KM      P+ +TY  +  M G+C    +  A ++FD +   G    V + N 
Sbjct: 289 EAHDVVDKMIQRGVEPNVVTYTAL--MDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNT 346

Query: 267 MLEAYC--------------MNGLPT-----EADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           ++  YC              M+         EA  +F+     G  P+  +Y  L   Y 
Sbjct: 347 LINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYC 406

Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
           K    +    L   M +  ++P+
Sbjct: 407 KIQRIDKAMYLFGEMCRQELIPD 429



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 125/291 (42%), Gaps = 9/291 (3%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A+ +F  M   GC P+   YN LI  +     K + + KA+  F +M   E   P+ VTY
Sbjct: 379 AVKVFDTMVCKGCMPNVISYNTLINGYC----KIQRIDKAMYLFGEMCRQELI-PDTVTY 433

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
           + L+        +    ALF E+      P++ TY  ++D   KN  + E  ++L  ++ 
Sbjct: 434 STLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEG 493

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
           +   PDI   N+ ID   +    +    +F +L     +P + T++ MI    +  L  +
Sbjct: 494 SNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDE 553

Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
           A  +F++M     T +   Y  I   +   +  SRA ++  E+   G     ST+   ++
Sbjct: 554 ASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVK 613

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSST---YKLLYKAYT-KANMKELVQ 316
               +GL      +  N      T DSS+     +L K  + + N  +LVQ
Sbjct: 614 MLSDDGLDQSLKQILRNGCKWISTFDSSSSTGLHILQKGISHERNESDLVQ 664



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 122/302 (40%), Gaps = 9/302 (2%)

Query: 37  MRNSGCRPDPSVYNALITAHL---HTRDKAKALA-----KALGYFQKMKGMERCKPNIVT 88
           MR    RP  +   +L+   L   H R  +K+L       A+  F +M  M+   P+ V 
Sbjct: 5   MRRPSSRPSGTQMLSLLPHFLSLSHNRFHSKSLHFNTIDGAISSFNRMLRMQP-PPSTVD 63

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           +N LL + A+ ++   + +L  ++    + P+IYT + +++++     +    SVL+++ 
Sbjct: 64  FNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKIL 123

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
               +PD  TF  LI          +   +F  ++    +P + T+ ++I    K     
Sbjct: 124 KLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTS 183

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A  +   M      P+   Y  II        V+ A  +F E+   G    + T N+++
Sbjct: 184 AAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLI 243

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
            A C          L     +  + PD  ++  +  A  K         ++ +M Q G+ 
Sbjct: 244 HALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVE 303

Query: 329 PN 330
           PN
Sbjct: 304 PN 305


>gi|410110077|gb|AFV61118.1| pentatricopeptide repeat-containing protein 123, partial
           [Coelocarpum swinglei]
          Length = 440

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 142/302 (47%), Gaps = 5/302 (1%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           LF EMR     PD   Y+ LIT H     K      AL + QKM+  +R   ++V Y+ L
Sbjct: 2   LFDEMREKALSPDRYTYSTLIT-HF---GKEGLFDAALSWLQKME-QDRVPGDLVLYSNL 56

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +    +  +  +  ++F  L  S   PD+  YN +++ +GK  + ++  S++S M++   
Sbjct: 57  IELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGV 116

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
            P+  +++ L+  Y + + F +   VF  +   K    L T N MI  YG+  +  +A+ 
Sbjct: 117 MPNASSYSALLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADK 176

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           +F  M  M   P+ ++Y  ++ +YG  +    A  +F  + +   +  V T N+M+  Y 
Sbjct: 177 LFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYG 236

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
                 +A+ L +   N G+ P+S TY  +   + K    +    L +++  +G+  ++ 
Sbjct: 237 KTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKIGKLDRAAMLFQKLRTSGVEIDQI 296

Query: 333 FF 334
            F
Sbjct: 297 LF 298



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 110/224 (49%)

Query: 107 ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
            LF E+ E  L+PD YTY+ ++  +GK G+     S L +M+ ++   D++ ++ LI+  
Sbjct: 1   GLFDEMREKALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELS 60

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
            K   + K   +F  L  S   P L  +N+MI  +GKA+L   A  +  +M      P+ 
Sbjct: 61  RKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNA 120

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
            +Y  ++TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF  
Sbjct: 121 SSYSALLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              MG+ P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 224



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 149/320 (46%), Gaps = 5/320 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI   GK+G    A+    +M       D  +Y+ LI       D +KA++  
Sbjct: 14  DRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAIS-- 71

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F ++K      P++V YN ++    +A+      +L  E+  + + P+  +Y+ ++ 
Sbjct: 72  --IFSRLK-RSGFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNASSYSALLT 128

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y +N    E  SV + M+  +C  D+ T N++ID YG+     + +++F  +     +P
Sbjct: 129 MYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 188

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG      +A  + 
Sbjct: 189 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 248

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            E+   G +    T + ++  +   G    A +LF+     GV  D   ++ +  AY +A
Sbjct: 249 QEMQNRGIEPNSITYSTIISIWGKIGKLDRAAMLFQKLRTSGVEIDQILFQTMIXAYERA 308

Query: 310 NMKELVQKLLKRMEQNGIVP 329
            +    ++LL  +++   +P
Sbjct: 309 GLVAHAKRLLHELKRPDNIP 328



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 150/323 (46%), Gaps = 19/323 (5%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEMR +G  P+ S Y+AL+T ++     
Sbjct: 77  KRSGFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNASSYSALLTMYVEN--- 133

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K   +AL  F +M+ + +C  ++ T NI++    Q     + + LF  + +  + P++ 
Sbjct: 134 -KKFLEALSVFAEMREI-KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 191

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN ++  YG   +  E   +   M+    + +++T+N ++  YGK    +K   + + +
Sbjct: 192 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 251

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
            +   +P   T++++I  +GK     +A  +FQK+         I ++ +I  Y     V
Sbjct: 252 QNRGIEPNSITYSTIISIWGKIGKLDRAAMLFQKLRTSGVEIDQILFQTMIXAYERAGLV 311

Query: 243 SRAREIFDELSK---LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
           + A+ +  EL +   + +D  +  L          G   EA  +F  + + G   D + +
Sbjct: 312 AHAKRLLHELKRPDNIPRDTAIHILAGA-------GRIEEATYVFRQAIDAGEVKDITVF 364

Query: 300 KLLYKAYTK----ANMKELVQKL 318
           + +   ++K    AN+ E+  K+
Sbjct: 365 ERMIHLFSKYKKYANVVEVFDKM 387


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 149/328 (45%), Gaps = 12/328 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR-- 60
           K +  + D   YS LI  + K G +R    LF EM+  G   D   YN +I     +   
Sbjct: 579 KAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKV 638

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           DKA  L + +    K KG++   P +VTY  ++   A+   +D+   LF+E     +  +
Sbjct: 639 DKAYQLLEEM----KTKGLQ---PTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLN 691

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           +  Y+ ++D +GK G I E   +L  +      P+  T+N L+D+  K +  D+ +  F+
Sbjct: 692 VVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQ 751

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           ++ + K  P   T++ MI      R   KA   +Q+M      P+ ITY  +I       
Sbjct: 752 NMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAG 811

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
           NV  AR +FD     G     +  NAM+E         +A ++FE +   G   +S T  
Sbjct: 812 NVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCV 871

Query: 301 LLYKAYTKANMKE---LVQKLLKRMEQN 325
           +L  A  KA+  E   +V  +L+ M ++
Sbjct: 872 VLLDALHKADCLEQAAIVGAVLREMAKS 899



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 151/337 (44%), Gaps = 5/337 (1%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I +  +Y+ LI    K G+      ++ EM + GC PD      L+ +++    KA  + 
Sbjct: 514 IPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDL----MLLNSYMDCVFKAGEVE 569

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           K    F+++K  +   P++ +Y+IL+    +A    +   LF E+ E  L  D+  YN V
Sbjct: 570 KGRALFEEIKA-QGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTV 628

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D + K+G + +   +L  MK+   +P ++T+  ++D   K    D+   +F+       
Sbjct: 629 IDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGV 688

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
              +  ++S+I  +GK     +A  + +++     TP+  T+ C++      + +  A+ 
Sbjct: 689 DLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQV 748

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
            F  +  L       T + M+   CM     +A + ++     G+ P++ TY  +     
Sbjct: 749 CFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLA 808

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           KA      + L  R + +G VP+   +   +E  SS+
Sbjct: 809 KAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSA 845



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 144/332 (43%), Gaps = 22/332 (6%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y A+  +++ L+ V  ++G+   A+ L  EM+++    D  +YN  I        K   +
Sbjct: 234 YEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCF----GKVGKV 289

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             A  +F +MK  +   P+ VTY  L+    +AR +D+   LF+EL  +   P +Y YN 
Sbjct: 290 DMAWKFFHEMKA-QGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNT 348

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  YG  G   E  S+L R K   C P +I +N ++   G++   ++  ++    M   
Sbjct: 349 MIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDE-MRQD 407

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT---PSFITYECIITMYGYCDNVS 243
             P L T+N +I    KA   G+ E   +    MK     P+ +T   +I        + 
Sbjct: 408 AAPNLTTYNILIDMLCKA---GELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLD 464

Query: 244 RAREIFDELSKLGKDMKVS-----TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
            A  IF     LG D KV      T  ++++     G   +A  L+E   +    P+   
Sbjct: 465 EACSIF-----LGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVV 519

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y  L + + K   KE   K+ K M   G  P+
Sbjct: 520 YTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPD 551



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 139/360 (38%), Gaps = 41/360 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K   + AD  +Y+  I   GK G+  +A   F EM+  G  PD   Y  LI        K
Sbjct: 265 KSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLC----K 320

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A+ L +A+  F+++  + R  P +  YN ++     A   D+  +L +        P + 
Sbjct: 321 ARRLDEAVELFEELD-LNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVI 379

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL-------------------- 162
            YN ++   G+ G ++E   +   M+ +   P++ T+N+L                    
Sbjct: 380 AYNCILTCLGRKGKVEEALRIHDEMRQDA-APNLTTYNILIDMLCKAGELEAALKVQDTM 438

Query: 163 ---------------IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
                          ID   K Q  D+   +F  L H    P   TF S+I   G+    
Sbjct: 439 KEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRV 498

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
             A  +++KM      P+ + Y  +I  +  C       +I+ E+   G    +  LN+ 
Sbjct: 499 DDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSY 558

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           ++     G   +   LFE     G+ PD  +Y +L     KA       KL   M++ G+
Sbjct: 559 MDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGL 618



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 149/346 (43%), Gaps = 16/346 (4%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI-----TAH 56
           QK++  I     Y+ ++  +G+KG+   A+ +  EMR     P+ + YN LI        
Sbjct: 369 QKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAA-PNLTTYNILIDMLCKAGE 427

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
           L    K +   K  G F          PNI+T NI++    +A+ +D+  ++F  L   +
Sbjct: 428 LEAALKVQDTMKEAGLF----------PNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKV 477

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
            +PD  T+  ++D  G+ G + +  S+  +M  +   P+++ +  LI ++ K    +   
Sbjct: 478 CSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGH 537

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
           +++K ++H    P L   NS +    KA    K   +F+++ A    P   +Y  +I   
Sbjct: 538 KIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGL 597

Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
                     ++F E+ + G  + V   N +++ +C +G   +A  L E     G+ P  
Sbjct: 598 VKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTV 657

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            TY  +     K +  +    L +  +  G+  N   +   ++ F 
Sbjct: 658 VTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFG 703



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 135/316 (42%), Gaps = 6/316 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I   G  G+   A  L    +  GC P    YN ++T  L  + K +   +AL   
Sbjct: 346 YNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTC-LGRKGKVE---EALRIH 401

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M+  +   PN+ TYNIL+    +A  ++    +   + E+ L P+I T N ++D   K
Sbjct: 402 DEMR--QDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCK 459

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              + E  S+   +    C PD  TF  LID  G+R   D    +++ ++ S + P +  
Sbjct: 460 AQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVV 519

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + S+I N+ K   +     ++++M     +P  +     +        V + R +F+E+ 
Sbjct: 520 YTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIK 579

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V + + ++      G   E   LF      G+  D   Y  +   + K+   +
Sbjct: 580 AQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVD 639

Query: 314 LVQKLLKRMEQNGIVP 329
              +LL+ M+  G+ P
Sbjct: 640 KAYQLLEEMKTKGLQP 655



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 142/325 (43%), Gaps = 8/325 (2%)

Query: 16  KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQK 75
           +L+A   K  + + A  +   MR    RP  S Y  LI A L   ++   +   L  F +
Sbjct: 173 ELVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGA-LSAANRPDPM---LTLFHQ 228

Query: 76  MKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG 135
           M+ +   + N+  +  L+R  A+   +D   +L  E+  +    D+  YN  +D +GK G
Sbjct: 229 MQEIGY-EANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVG 287

Query: 136 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195
            +         MK+    PD +T+  LI    K +  D+  ++F+ L  ++  P +  +N
Sbjct: 288 KVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYN 347

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
           +MI+ YG A    +A  + ++       PS I Y CI+T  G    V  A  I DE+ + 
Sbjct: 348 TMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQD 407

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENS-HNMGVTPDSSTYKLLYKAYTKANMKEL 314
                ++T N +++  C  G   EA L  +++    G+ P+  T  ++     KA   + 
Sbjct: 408 AAP-NLTTYNILIDMLCKAG-ELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDE 465

Query: 315 VQKLLKRMEQNGIVPNKRFFLEALE 339
              +   ++     P+ R F   ++
Sbjct: 466 ACSIFLGLDHKVCSPDSRTFCSLID 490



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/243 (19%), Positives = 93/243 (38%)

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
            YN  L   A+ RN+D +  + +E+  +      +    ++ ++ K+  +KE   V+  M
Sbjct: 135 VYNAFLMVMARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMM 194

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           +  + +P    +  LI +       D M  +F  +     +  +  F +++  + +    
Sbjct: 195 RKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRI 254

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
             A  +  +M +  +T   + Y   I  +G    V  A + F E+   G      T   +
Sbjct: 255 DAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTL 314

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +   C      EA  LFE        P    Y  +   Y  A   +    LL+R ++ G 
Sbjct: 315 IGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGC 374

Query: 328 VPN 330
           +P+
Sbjct: 375 IPS 377


>gi|449465242|ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 690

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 139/332 (41%), Gaps = 29/332 (8%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVY------------------------ 49
           Y+ +I  + K G    A+ LF  M  + CRP+   Y                        
Sbjct: 347 YNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEVSN 406

Query: 50  ---NALITAHL-HTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQV 105
              N  I A+L  T  K    ++A   F  M             ++L   C   + V+ +
Sbjct: 407 KFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAI 466

Query: 106 NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
             L  ++HE  ++ D   YN V+   GK   +  +  +  +MK +   PDI T+N+LI S
Sbjct: 467 E-LLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISS 525

Query: 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
            G+     +  +VF+ L  S  KP + ++NS+I   GK     +A   F +M      P 
Sbjct: 526 LGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPD 585

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
            +TY  +I  +G  D V  AR +FD +   G    + T N +L+     G   E   L+ 
Sbjct: 586 VVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRTAETVDLYA 645

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
                G+TPDS TY +L +  + +N K  V++
Sbjct: 646 KLREQGLTPDSITYAILDRLQSGSNRKFRVRR 677



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 8/227 (3%)

Query: 6   WYIADTG---IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           W   D G    Y  ++  + + G+T  A+ L S++   G   D  +YN +    L T  K
Sbjct: 438 WSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTV----LSTLGK 493

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K ++     ++KMK  +   P+I TYNIL+ +  +   V +   +F+EL  S   PDI 
Sbjct: 494 LKQVSHLHDLYEKMK-QDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDII 552

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +YN +++  GKNG + E       M+     PD++T++ LI+ +GK    +    +F  +
Sbjct: 553 SYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRM 612

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
           +     P + T+N ++    +A    +   ++ K+     TP  ITY
Sbjct: 613 ITQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTPDSITY 659



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 142/354 (40%), Gaps = 39/354 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I + GK G+   ++ LF EM   GC P+   YN +I A      K+  + KA
Sbjct: 308 DEYTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQA----LSKSGMVDKA 363

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY----- 124
           +  F  M     C+PN  TY+I+L        + +++ +  E+    +   IY Y     
Sbjct: 364 ILLFCNMIK-NNCRPNEFTYSIILNVLVAEGQLGRLDEVL-EVSNKFINKSIYAYLVRTL 421

Query: 125 ---------------------NGVMDAY-------GKNGMIKEMESVLSRMKSNQCKPDI 156
                                 G  DAY        + G   E   +LS++       D 
Sbjct: 422 SKLGHSSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDT 481

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           + +N ++ + GK +    +  +++ +      P + T+N +I + G+     +A  VF++
Sbjct: 482 MMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEE 541

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
           + +    P  I+Y  +I   G   +V  A   F E+   G +  V T + ++E +     
Sbjct: 542 LESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDK 601

Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              A  LF+     G  P+  TY +L     +A        L  ++ + G+ P+
Sbjct: 602 VEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTPD 655



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 113/278 (40%), Gaps = 32/278 (11%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           N  TY  LL+A  ++R+ D+   ++ E+       DI+ YN ++DA  K+  +     V 
Sbjct: 238 NAYTYRCLLQAHIRSRDSDRAFNVYMEMWSKGYQLDIFAYNMLLDALAKDEQLDRSYKVF 297

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
             MK   C PD  T+ ++I   GK    ++   +F+ ++     P L  +N+MI    K+
Sbjct: 298 KDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKS 357

Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD-------------- 250
            +  KA  +F  M      P+  TY  I+ +      + R  E+ +              
Sbjct: 358 GMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEVSNKFINKSIYAYL 417

Query: 251 --ELSKLGKDMKVSTL----------------NAMLEAYCMNGLPTEADLLFENSHNMGV 292
              LSKLG   +   L                 +MLE+ C  G   EA  L    H  G+
Sbjct: 418 VRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGI 477

Query: 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + D+  Y  +     K      +  L ++M+Q+G  P+
Sbjct: 478 STDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPD 515



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/368 (20%), Positives = 146/368 (39%), Gaps = 72/368 (19%)

Query: 30  AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
           A  ++ EM + G + D   YN L+ A      K + L ++   F+ MK ++ C P+  TY
Sbjct: 258 AFNVYMEMWSKGYQLDIFAYNMLLDA----LAKDEQLDRSYKVFKDMK-LKHCNPDEYTY 312

Query: 90  NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
            I++R   +    ++  ALF+E+      P++  YN ++ A  K+GM+ +   +   M  
Sbjct: 313 TIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIK 372

Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFK-------------------SLMHSKEKPT 190
           N C+P+  T++++++         ++++V +                    L HS E   
Sbjct: 373 NNCRPNEFTYSIILNVLVAEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHR 432

Query: 191 L-------------PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           L               + SM+ +  +     +A  +  K+     +   + Y  +++  G
Sbjct: 433 LFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLG 492

Query: 238 YCDNVSRAREIFDE----------------LSKLGKDMKVS------------------- 262
               VS   +++++                +S LG+  KV                    
Sbjct: 493 KLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDII 552

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           + N+++     NG   EA + F    + G+ PD  TY  L + + K +  E+ + L  RM
Sbjct: 553 SYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRM 612

Query: 323 EQNGIVPN 330
              G  PN
Sbjct: 613 ITQGCCPN 620



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 5/160 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ     D   Y+ LI+ +G+ G+ + A+ +F E+ +S C+PD   YN+LI       D 
Sbjct: 508 KQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDV 567

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +A  + L    + KG+    P++VTY+ L+    +   V+   +LF  +      P+I 
Sbjct: 568 DEAHMRFLE--MQDKGL---NPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIV 622

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           TYN ++D   + G   E   + ++++     PD IT+ +L
Sbjct: 623 TYNILLDCLERAGRTAETVDLYAKLREQGLTPDSITYAIL 662



 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 83/202 (41%), Gaps = 17/202 (8%)

Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
           I ++  +LS+M  +Q +  I T N+LI  +   +  +    + K       +    T+  
Sbjct: 188 IDQVREILSQMDRDQIRGTISTVNILIKIFSSNEDLELCTGLIKKW---DLRLNAYTYRC 244

Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
           ++  + ++R   +A  V+ +M +  Y      Y  ++      + + R+ ++F       
Sbjct: 245 LLQAHIRSRDSDRAFNVYMEMWSKGYQLDIFAYNMLLDALAKDEQLDRSYKVF------- 297

Query: 257 KDMKVSTLNA-------MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           KDMK+   N        M+      G   E+  LFE     G TP+   Y  + +A +K+
Sbjct: 298 KDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKS 357

Query: 310 NMKELVQKLLKRMEQNGIVPNK 331
            M +    L   M +N   PN+
Sbjct: 358 GMVDKAILLFCNMIKNNCRPNE 379


>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
 gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
          Length = 894

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 135/317 (42%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  +I  +G+K        L  EM+  G  P+  +YN +I A    R  ++ALA      
Sbjct: 349 YGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQALA----VL 404

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M    R  P++VT+N L+ A  +  +V++   L +E     L P+  +Y  ++  +  
Sbjct: 405 NQMVA-SRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHGFCV 463

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +     +L  M      PD++T   LI         D+   V + +   +  P    
Sbjct: 464 RGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANI 523

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N +I    K R+   A+ +  +M   K  P    Y  +I  +   D +S AR+IF+ + 
Sbjct: 524 YNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFME 583

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           + G    +   NAM++ YC +G+  EA +   +   +G  PD  TY  L   Y K    +
Sbjct: 584 EKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIK 643

Query: 314 LVQKLLKRMEQNGIVPN 330
              + L  M +    PN
Sbjct: 644 AALRFLCDMMKRRCKPN 660



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 137/316 (43%), Gaps = 21/316 (6%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R  + D  IY+ LI+ + KK     A  L  EM     +PD  VY  LI   +  R   
Sbjct: 514 ERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFI--RSDK 571

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
            + A+ +  F + KG  R   +IV YN +++   ++  +++       + +    PD +T
Sbjct: 572 LSDARKIFEFMEEKGGYR---DIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFT 628

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++D Y K G IK     L  M   +CKP+I+T+  LI  Y      D  E +F S+ 
Sbjct: 629 YTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLICGYCNIGNTDSAEVLFASMQ 688

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII-----TMYGY 238
                P +  +  +I +  K     +A   F+ M     +P+  T   ++       YG 
Sbjct: 689 SEGLFPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLLNHCSPNDATMHYLVNGLTNCRYGM 748

Query: 239 ----CDNVSRAR------EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
               C +  +A       ++F  L   G D ++S  NA++ + C + +  +A  L E   
Sbjct: 749 INSNCSDTDQAHKKSALLDVFKGLISDGLDPRISAYNAIIFSLCRHNMLGKAMELKEKMS 808

Query: 289 NMGVTPDSSTY-KLLY 303
           N G  PD  T+  LLY
Sbjct: 809 NKGCLPDPVTFLSLLY 824



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 123/267 (46%), Gaps = 4/267 (1%)

Query: 80  ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
           E C P  V YN+L+    +  +V +   L  E+    + P + TY  ++   G+   + +
Sbjct: 305 EGCVPGAVFYNVLIDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSDLTK 364

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
           +ES+L  MK     P++  +N +I +  K ++  +   V   ++ S+  P + TFN++I 
Sbjct: 365 IESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIA 424

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGK 257
            + +     +A  + ++    +  P+ ++Y  +I  +G+C    V  A ++  E+   G 
Sbjct: 425 AFCREGDVEEALKLLREAIRRELEPNQLSYTPLI--HGFCVRGEVMVASDLLVEMIGRGH 482

Query: 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
              V TL A++    ++G   EA ++ E      V PD++ Y +L     K  M    + 
Sbjct: 483 TPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKN 542

Query: 318 LLKRMEQNGIVPNKRFFLEALETFSSS 344
           LL  M +  + P+K  +   ++ F  S
Sbjct: 543 LLVEMLEQKVQPDKFVYTTLIDGFIRS 569



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/321 (20%), Positives = 126/321 (39%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ LIA   ++G    A+ L  E       P+   Y  LI    H       +  A
Sbjct: 415 DVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLI----HGFCVRGEVMVA 470

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                +M G     P++VT   L+     +  VD+   + +++ E  + PD   YN ++ 
Sbjct: 471 SDLLVEMIGRGH-TPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLIS 529

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K  M+   +++L  M   + +PD   +  LID + +        ++F+ +       
Sbjct: 530 GLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYR 589

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  +N+MI  Y K+ +  +A      M  +   P   TY  +I  Y    ++  A    
Sbjct: 590 DIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFL 649

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
            ++ K      + T  +++  YC  G    A++LF +  + G+ P+   Y +L  +  K 
Sbjct: 650 CDMMKRRCKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSLFKK 709

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
           +         + M  N   PN
Sbjct: 710 DKAIQAAAYFEHMLLNHCSPN 730


>gi|357450749|ref|XP_003595651.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484699|gb|AES65902.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 130/266 (48%), Gaps = 8/266 (3%)

Query: 43  RPD--PSVYNALITAHLHTRDKAKALAK-ALGYFQKMKGMERCKPNIVTYNILLRACAQA 99
           RPD  P V+  L+   L    +   + K A  Y++ +K  +R   +   YN ++  CA+A
Sbjct: 503 RPDIVPDVF--LLRDMLRIYQRRNMVDKLAQVYYKILK--DRLNWDQEFYNCVINCCARA 558

Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
             +D+++ LF E+ +    P+ +TYN +++ +GK  + K++   L  M   Q   D+IT+
Sbjct: 559 LPIDELSRLFDEMLQRGFMPNTFTYNVMLNVFGKAKLFKKVRR-LYFMAKKQGLVDVITY 617

Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
           N +IDSYGK++ F  M +  + +       +L  +NSM+  YGK         V + M  
Sbjct: 618 NTIIDSYGKKKDFRNMSRTVRKMQFDGFSVSLEAYNSMLDAYGKDSQMDAFRSVLKMMKE 677

Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
                   TY  +I +YG    +    ++  EL++ G    + + N +++AY + G+  E
Sbjct: 678 SNCASDLYTYNIVINIYGEQGWIEEVSDVLAELNECGLRPDLCSYNTLIKAYGIAGMVEE 737

Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKA 305
           A  L +     G+ PD +TY  L  A
Sbjct: 738 AVELIKEMRKNGIEPDQTTYTNLINA 763



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 101/203 (49%), Gaps = 10/203 (4%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA--LGYFQKMKGMERCKPNIVTYN 90
           LF EM   G  P+   YN +    L+   KAK   K   L +  K +G+     +++TYN
Sbjct: 567 LFDEMLQRGFMPNTFTYNVM----LNVFGKAKLFKKVRRLYFMAKKQGL----VDVITYN 618

Query: 91  ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
            ++ +  + ++   ++   +++     +  +  YN ++DAYGK+  +    SVL  MK +
Sbjct: 619 TIIDSYGKKKDFRNMSRTVRKMQFDGFSVSLEAYNSMLDAYGKDSQMDAFRSVLKMMKES 678

Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
            C  D+ T+N++I+ YG++   +++  V   L     +P L ++N++I  YG A +  +A
Sbjct: 679 NCASDLYTYNIVINIYGEQGWIEEVSDVLAELNECGLRPDLCSYNTLIKAYGIAGMVEEA 738

Query: 211 EYVFQKMTAMKYTPSFITYECII 233
             + ++M      P   TY  +I
Sbjct: 739 VELIKEMRKNGIEPDQTTYTNLI 761



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 118/254 (46%), Gaps = 7/254 (2%)

Query: 83  KPNIVTYNILLR---ACAQARN-VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIK 138
           +P+IV    LLR      Q RN VD++  ++ ++ +  L  D   YN V++   +   I 
Sbjct: 503 RPDIVPDVFLLRDMLRIYQRRNMVDKLAQVYYKILKDRLNWDQEFYNCVINCCARALPID 562

Query: 139 EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT-LPTFNSM 197
           E+  +   M      P+  T+N++++ +GK + F K+ +++   M  K+    + T+N++
Sbjct: 563 ELSRLFDEMLQRGFMPNTFTYNVMLNVFGKAKLFKKVRRLY--FMAKKQGLVDVITYNTI 620

Query: 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK 257
           I +YGK +         +KM    ++ S   Y  ++  YG    +   R +   + +   
Sbjct: 621 IDSYGKKKDFRNMSRTVRKMQFDGFSVSLEAYNSMLDAYGKDSQMDAFRSVLKMMKESNC 680

Query: 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
              + T N ++  Y   G   E   +    +  G+ PD  +Y  L KAY  A M E   +
Sbjct: 681 ASDLYTYNIVINIYGEQGWIEEVSDVLAELNECGLRPDLCSYNTLIKAYGIAGMVEEAVE 740

Query: 318 LLKRMEQNGIVPNK 331
           L+K M +NGI P++
Sbjct: 741 LIKEMRKNGIEPDQ 754



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 5/165 (3%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   Y+ +I   GKK   R       +M+  G       YN+++ A+        +  
Sbjct: 611 LVDVITYNTIIDSYGKKKDFRNMSRTVRKMQFDGFSVSLEAYNSMLDAY-----GKDSQM 665

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            A     KM     C  ++ TYNI++    +   +++V+ +  EL+E  L PD+ +YN +
Sbjct: 666 DAFRSVLKMMKESNCASDLYTYNIVINIYGEQGWIEEVSDVLAELNECGLRPDLCSYNTL 725

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 172
           + AYG  GM++E   ++  M+ N  +PD  T+  LI++  +   F
Sbjct: 726 IKAYGIAGMVEEAVELIKEMRKNGIEPDQTTYTNLINALKRNDKF 770



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/299 (20%), Positives = 129/299 (43%), Gaps = 12/299 (4%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           I++ LI    K+G  +L    F  M +    P+ + +  L+  +    +  +A    + +
Sbjct: 87  IFNTLIYASSKRGLVKLTSKWFRMMLDCNVTPNVATFGMLMRLYQKNWNVEEA-EFVMSH 145

Query: 73  FQKMKGM-ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            ++   + E    +++T    L   A+A +V ++      + + ++  ++  +  +++ Y
Sbjct: 146 MKRFSVVCESAYSSMITIYTRLGLYAKAESVVEL------MEKEVMVLNVENWLVILNLY 199

Query: 132 GKNGMIKEMESVLSRMKSNQ--CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            + G + E E VL+ M+     C  +I+ +N +I  YGK    D  E VF  L   + +P
Sbjct: 200 CQQGKMVEAERVLAIMEEEAGFCVENIVVYNTMITGYGKASNMDGAESVFLRL-GGRIEP 258

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              ++ SMI  +G+A    KA + ++++  + + PS      +I +    D++       
Sbjct: 259 DETSYRSMIEGWGRAGNYEKARWYYEELKRLGFKPSSSNLFTMIKLQANEDDLDGVVGTL 318

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
           D++ + G     S +  ++  Y   G   E   L + S    +  + S    +  AY K
Sbjct: 319 DDMVRCGCHYS-SIIGTLVSVYERAGKVYELPRLLKGSFYRYILVNQSCCSTVVMAYVK 376



 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 77/363 (21%), Positives = 141/363 (38%), Gaps = 53/363 (14%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  +I   G+ G    A W + E++  G +P  S        +L T  K +A    
Sbjct: 259 DETSYRSMIEGWGRAGNYEKARWYYEELKRLGFKPSSS--------NLFTMIKLQANEDD 310

Query: 70  L-GYFQKMKGMERCKPNIVTY-NILLRACAQARNVDQVNALFK-ELHESILAPDIYTYNG 126
           L G    +  M RC  +  +    L+    +A  V ++  L K   +  IL         
Sbjct: 311 LDGVVGTLDDMVRCGCHYSSIIGTLVSVYERAGKVYELPRLLKGSFYRYILVNQSCCSTV 370

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS- 185
           VM AY KN ++ +   VLS  K    + +   ++LLI S  +    +    ++  +M S 
Sbjct: 371 VM-AYVKNKLVDDALRVLSDKKWKDSRNEDNLYHLLICSCKEAGLLEDAVGIYNQMMKSN 429

Query: 186 --KEKPTLPTFNSMIINYGKARLQGKAEYVFQKM--TAMKYTPSFITYECIITMYGYCDN 241
             ++K       +MI  Y        AE ++ K+  ++   +   I Y  ++ MY    +
Sbjct: 430 ADEKKLNKHIVCTMIDIYSVMGCFKDAEMLYLKLKKSSSPNSLDMIAYSIVVRMYVRAGS 489

Query: 242 VSRAREIFDELSK---------LGKDM-----KVSTLNAMLEAY---------------- 271
           +  A  + D++ K         L +DM     + + ++ + + Y                
Sbjct: 490 LEDACSVLDDIDKRPDIVPDVFLLRDMLRIYQRRNMVDKLAQVYYKILKDRLNWDQEFYN 549

Query: 272 -----CMNGLPT-EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
                C   LP  E   LF+     G  P++ TY ++   + KA + + V++L    ++ 
Sbjct: 550 CVINCCARALPIDELSRLFDEMLQRGFMPNTFTYNVMLNVFGKAKLFKKVRRLYFMAKKQ 609

Query: 326 GIV 328
           G+V
Sbjct: 610 GLV 612


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 149/352 (42%), Gaps = 40/352 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI     +G+  +A  L +EM + G  P+   +NALI  H+   +  +AL   + Y 
Sbjct: 341 YNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALK--MFYM 398

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            + KG+    P+ V+Y +LL    +    D     +  +  + +     TY G++D   K
Sbjct: 399 MEAKGL---TPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCK 455

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP---- 189
           NG + E   +L+ M  +   PDI+T++ LI+ + K   F   +++   +      P    
Sbjct: 456 NGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGII 515

Query: 190 --TLP-----------------------------TFNSMIINYGKARLQGKAEYVFQKMT 218
             TL                              TFN ++ +  KA    +AE   + MT
Sbjct: 516 YSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMT 575

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           +    P+ ++++C+I  YG      +A  +FDE++K+G      T  ++L+  C  G   
Sbjct: 576 SDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLR 635

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           EA+   ++ H +    D+  Y  L  A  K+        L   M Q  I+P+
Sbjct: 636 EAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPD 687



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 146/346 (42%), Gaps = 5/346 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ ++    KKG+ + A+ L   M++ G   D   YN LI    H   ++  +AK     
Sbjct: 271 YNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLI----HDLCRSNRIAKGYLLL 326

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M+      PN VTYN L+   +    V   + L  E+    L+P+  T+N ++D +  
Sbjct: 327 RDMR-KRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHIS 385

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G  KE   +   M++    P  +++ +L+D   K   FD     +  +  +       T
Sbjct: 386 EGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRIT 445

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +  MI    K     +A  +  +M+     P  +TY  +I  +        A+EI   + 
Sbjct: 446 YTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIY 505

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           ++G        + ++   C  G   EA  ++E     G T D  T+ +L  +  KA    
Sbjct: 506 RVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVA 565

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTR 359
             ++ ++ M  +GI+PN   F   +  + +S  G ++ S   ++T+
Sbjct: 566 EAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTK 611



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 131/290 (45%), Gaps = 5/290 (1%)

Query: 42  CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN 101
           C  +PSVY+ LI  +L    +   +  +L  F+ M G+    P++ T N +L +  ++  
Sbjct: 159 CNSNPSVYDILIRVYL----REGMIQDSLEIFRLM-GLYGFNPSVYTCNAILGSVVKSGE 213

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
              V +  KE+ +  + PD+ T+N +++     G  ++   ++ +M+ +   P I+T+N 
Sbjct: 214 DVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNT 273

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           ++  Y K+  F    ++   +        + T+N +I +  ++    K   + + M    
Sbjct: 274 VLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRM 333

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
             P+ +TY  +I  +     V  A ++ +E+   G      T NA+++ +   G   EA 
Sbjct: 334 IHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEAL 393

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
            +F      G+TP   +Y +L     K    +L +    RM++NG+   +
Sbjct: 394 KMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGR 443



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 134/299 (44%), Gaps = 20/299 (6%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            DT +Y+ L+  M K G    A+ LF EM      PD   Y +LI+       K K +  
Sbjct: 651 VDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCR---KGKTVIA 707

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI-LAPDIYTYNGV 127
            L + ++ +      PN V Y   +    +A    +    F+E  +++   PDI T N +
Sbjct: 708 IL-FAKEAEARGNVLPNKVMYTCFVDGMFKAGQW-KAGIYFREQMDNLGHTPDIVTTNAM 765

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D Y + G I++   +L  M +    P++ T+N+L+  Y KR+       +++S++ +  
Sbjct: 766 IDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGI 825

Query: 188 KPTLPTFNSMII-----NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN- 241
            P   T +S+++     N  +  L+    ++ + +   +YT + +  +C       C N 
Sbjct: 826 LPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKC-------CANG 878

Query: 242 -VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            ++ A ++   ++ LG  +   T +AM+     N    E+ ++       G++P+S  Y
Sbjct: 879 EINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKY 937



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 131/332 (39%), Gaps = 18/332 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ L+  + K G+   A      M + G  P+   ++ LI  + ++ +  KA +  
Sbjct: 547 DHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFS-- 604

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F +M  +    P   TY  LL+   +  ++ +     K LH    A D   YN ++ 
Sbjct: 605 --VFDEMTKVGH-HPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLT 661

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK- 188
           A  K+G + +  S+   M      PD  T+  LI    ++       +   +++ +KE  
Sbjct: 662 AMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKG------KTVIAILFAKEAE 715

Query: 189 ------PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 P    +   +    KA       Y  ++M  + +TP  +T   +I  Y     +
Sbjct: 716 ARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKI 775

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +  ++  E+        ++T N +L  Y      + + LL+ +    G+ PD  T   L
Sbjct: 776 EKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSL 835

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
                ++NM E+  K+LK     G+  ++  F
Sbjct: 836 VLGICESNMLEIGLKILKAFICRGVEVDRYTF 867



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 108/320 (33%), Gaps = 83/320 (25%)

Query: 37  MRNSGCRPDPSVYNALITAHLHTR----DKAKALAKALGYFQK---------MKGMERCK 83
           ++  G   D  V    IT H+  R    D A+ + K L              M     C 
Sbjct: 101 VKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRLCN 160

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
            N   Y+IL+R   +   +     +F+ +      P +YT N ++ +  K+G    + S 
Sbjct: 161 SNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSF 220

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L  M   +  PD+ TFN+LI+      +F+                              
Sbjct: 221 LKEMLKRKICPDVATFNILINVLCAEGSFE------------------------------ 250

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
                K+ Y+ QKM    Y P+ +TY                                  
Sbjct: 251 -----KSSYLMQKMEKSGYAPTIVTY---------------------------------- 271

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N +L  YC  G    A  L ++  + GV  D  TY +L     ++N       LL+ M 
Sbjct: 272 -NTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMR 330

Query: 324 QNGIVPNKRFFLEALETFSS 343
           +  I PN+  +   +  FS+
Sbjct: 331 KRMIHPNEVTYNTLINGFSN 350



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 141/354 (39%), Gaps = 42/354 (11%)

Query: 13   IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
            +Y+  +  M K GQ +  ++   +M N G  PD    NA+I  +     +   + K    
Sbjct: 726  MYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGY----SRMGKIEKTNDL 781

Query: 73   FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
              +M G +   PN+ TYNILL   ++ ++V     L++ +  + + PD  T + ++    
Sbjct: 782  LPEM-GNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGIC 840

Query: 133  KNGMIKEMESVLSRMKSNQCKPDIITFNLLID---SYGK-RQAFDKMEQVFKSLMHSKEK 188
            ++ M++    +L        + D  TFN+LI    + G+   AFD + +V  SL  S +K
Sbjct: 841  ESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFD-LVKVMTSLGISLDK 899

Query: 189  PTLPTFNSMI---INYGKARL-------QG----------------------KAEYVFQK 216
             T     S++     + ++R+       QG                       A  V ++
Sbjct: 900  DTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEE 959

Query: 217  MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
            M A K  P  +    ++     C     A  +   + K+     +++   ++   C NG 
Sbjct: 960  MIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGN 1019

Query: 277  PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              EA  L     N G+  D  +Y +L           L  +L + M+ +G + N
Sbjct: 1020 VIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLAN 1073



 Score = 44.7 bits (104), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 43/218 (19%), Positives = 87/218 (39%)

Query: 88   TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
            T+N+L+  C     ++    L K +    ++ D  T + ++    +N   +E   VL  M
Sbjct: 866  TFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEM 925

Query: 148  KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
                  P+   +  LI+   +         V + ++  K  P     ++M+    K    
Sbjct: 926  SKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKA 985

Query: 208  GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
             +A  + + M  MK  P+  ++  ++ +     NV  A E+   +S  G  + + + N +
Sbjct: 986  DEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVL 1045

Query: 268  LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            +   C  G    A  L+E     G   +++TYK L + 
Sbjct: 1046 ITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRG 1083


>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
 gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
          Length = 502

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 156/347 (44%), Gaps = 17/347 (4%)

Query: 12  GIYSKLIAVMGKK----GQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           G  SK  A++ ++    G+   A+ +F  MR  GC  D   +N +    L    K+K + 
Sbjct: 144 GPSSKTFAIIAERFVAAGKPDRAIKVFLSMREHGCPQDLHSFNTI----LDILCKSKRVE 199

Query: 68  KALG-YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            A    F+ ++G  + K ++V+YNI+       +   +   + KE+ E  L P I TYN 
Sbjct: 200 MAYNNLFKVLRG--KFKADVVSYNIIANGWCLIKRTPKALEVLKEMVERGLTPTITTYNI 257

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y + G +KE      +MK  + + D++T+  ++  +G      +  +VF  ++   
Sbjct: 258 LLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGEG 317

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P+  T+N+MI    K      A  +F++M    Y P+  TY  +I    +  N+ +A 
Sbjct: 318 ILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMDKAM 377

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA- 305
           E  + +   G +  V T N  +  +C  G   +   +FE     G  P+  TY +L  A 
Sbjct: 378 EFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEKM-GQGSLPNLDTYNVLISAM 436

Query: 306 YTKANMKELV--QKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
           + +   ++LV   KLL  M   G +P K  F   L      L G+Q+
Sbjct: 437 FVRKKSEDLVVAGKLLLEMVDRGFIPRKFTFNRVLNGL--LLTGNQA 481



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 125/264 (47%)

Query: 81  RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140
           R  P+  T+ I+      A   D+   +F  + E     D++++N ++D   K+  ++  
Sbjct: 142 RIGPSSKTFAIIAERFVAAGKPDRAIKVFLSMREHGCPQDLHSFNTILDILCKSKRVEMA 201

Query: 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
            + L ++   + K D++++N++ + +   +   K  +V K ++     PT+ T+N ++  
Sbjct: 202 YNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEMVERGLTPTITTYNILLKG 261

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
           Y +A    +A   F +M   +     +TY  ++  +G    + RAR++F+E+   G    
Sbjct: 262 YFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGILPS 321

Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
            +T NAM++  C       A L+FE     G  P+ +TY ++ +    A   +   + ++
Sbjct: 322 TATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIE 381

Query: 321 RMEQNGIVPNKRFFLEALETFSSS 344
           RM+ +G  PN + +  A+  F  +
Sbjct: 382 RMKTDGCEPNVQTYNVAIRYFCDA 405



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 96/201 (47%), Gaps = 13/201 (6%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+R    D   Y+ ++   G  G+ + A  +F+EM   G  P  + YNA+I        K
Sbjct: 279 KEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLC----K 334

Query: 63  AKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
             ++  A+  F++M  KG     PN+ TYN+++R    A N+D+     + +      P+
Sbjct: 335 KDSVENAVLMFEEMVKKGYV---PNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPN 391

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           + TYN  +  +   G +++  S+  +M      P++ T+N+LI +   R+  + +    K
Sbjct: 392 VQTYNVAIRYFCDAGDVEKGLSMFEKMGQGSL-PNLDTYNVLISAMFVRKKSEDLVVAGK 450

Query: 181 SLMHSKEKPTLP---TFNSMI 198
            L+   ++  +P   TFN ++
Sbjct: 451 LLLEMVDRGFIPRKFTFNRVL 471


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 150/339 (44%), Gaps = 18/339 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA-- 67
           D   Y+ +I    KKG  + A  +  +    G +PD   Y +LI       D  +A+A  
Sbjct: 294 DDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVF 353

Query: 68  -KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
              LG     KG+   +P+IV YN L++  +Q   +     L  E+ E+   P+I+TYN 
Sbjct: 354 KDGLG-----KGL---RPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNL 405

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           V++   K G + +   ++    +  C PDI T+N LID Y K+   D   ++   +    
Sbjct: 406 VINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQG 465

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYGYCDNVS 243
             P + T+N+++    KA   GK+E V +   AM+    TP+ ITY  I+        V+
Sbjct: 466 MTPDVITYNTLLNGLCKA---GKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVN 522

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN-SHNMGVTPDSSTYKLL 302
            A ++  E+   G    V +   +   +C  G    A  LF        V   ++TY ++
Sbjct: 523 EAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNII 582

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
             A+++     +  KL   M+ +G  P+   +   ++ F
Sbjct: 583 VSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGF 621



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 154/348 (44%), Gaps = 25/348 (7%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           + +  D   Y  LI    K G    AM +F +    G RP   +YN LI          K
Sbjct: 324 KGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLI----------K 373

Query: 65  ALAK---ALGYFQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
            L++    L   Q M  M    C PNI TYN+++    +   V   + L  +       P
Sbjct: 374 GLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPP 433

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           DI+TYN ++D Y K   +     +++RM S    PD+IT+N L++   K    +++ ++F
Sbjct: 434 DIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIF 493

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
           K++      P + T+N ++ +  KA+   +A  +  +M +    P  +++  + T +   
Sbjct: 494 KAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKI 553

Query: 240 DNVSRAREIFDELSK-LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
            ++  A ++F  + K        +T N ++ A+        A  LF    N G  PD+ T
Sbjct: 554 GDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYT 613

Query: 299 YKLLYKAYTK-ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 345
           Y+++   + K  N+ +  + LL+ ME+         F+ +L TF   L
Sbjct: 614 YRVVIDGFCKMGNITQGYKFLLENMEKR--------FIPSLTTFGRVL 653



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 137/326 (42%), Gaps = 14/326 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  ++A +   G+   A  LF EM      PD   +N L+    H   K   + ++    
Sbjct: 184 YCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLV----HVLCKKGLVFESERLL 239

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQV--NALFKELHESI-------LAPDIYTY 124
            K+     C PN+ T+NI ++   +   +D+   N+   E  E +         PD  TY
Sbjct: 240 GKVLKRGVC-PNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTY 298

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N ++D Y K GM+++   VL        KPD  T+  LI+ + K    D+   VFK  + 
Sbjct: 299 NSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLG 358

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
              +P++  +N++I    +  L   A  +  +M      P+  TY  +I        VS 
Sbjct: 359 KGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSD 418

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  + D+    G    + T N +++ YC       A  +     + G+TPD  TY  L  
Sbjct: 419 ASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLN 478

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
              KA   E V ++ K ME+ G  PN
Sbjct: 479 GLCKAGKSEEVMEIFKAMEEKGCTPN 504



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 135/313 (43%), Gaps = 14/313 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I  + K G    A  L  +    GC PD   YN LI  +     K   L  A    
Sbjct: 403 YNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYC----KQLKLDSATEMV 458

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  +GM    P+++TYN LL    +A   ++V  +FK + E    P+I TYN ++D+ 
Sbjct: 459 NRMWSQGM---TPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSL 515

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PT 190
            K   + E   +L  MKS   KPD+++F  L   + K    D   Q+F+ +    +   T
Sbjct: 516 CKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHT 575

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
             T+N ++  + +      A  +F  M      P   TY  +I  +    N+++  +   
Sbjct: 576 TATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLL 635

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-- 308
           E  +      ++T   +L   C+     EA  +       G+ P+  T   +++A  K  
Sbjct: 636 ENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQKGIVPE--TVNTIFEADKKVV 693

Query: 309 ANMKELVQKLLKR 321
           A  K LV+ LLK+
Sbjct: 694 AAPKILVEDLLKK 706



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 136/333 (40%), Gaps = 37/333 (11%)

Query: 2   QKQRWYIADTGIYSK--LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT 59
           ++  +Y  D  ++S   ++ ++ + G    A  ++  MR+ G + D   Y   I +   T
Sbjct: 100 ERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKT 159

Query: 60  RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
              A+  A AL   + M  +  C  N V Y  ++     +   D    LF E+    L P
Sbjct: 160 ---ARPYA-ALRLLRNMPELG-CDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCP 214

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           D+  +N ++    K G++ E E +L ++      P++ TFN+ +    +  A D+  +  
Sbjct: 215 DVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVR-- 272

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
                          NS ++         +AE   +KM    + P  +TY  II   GYC
Sbjct: 273 ---------------NSRVV---------EAEEYLRKMVNGGFEPDDLTYNSIID--GYC 306

Query: 240 DN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
               V  A  +  +    G      T  +++  +C +G P  A  +F++    G+ P   
Sbjct: 307 KKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIV 366

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            Y  L K  ++  +     +L+  M +NG +PN
Sbjct: 367 LYNTLIKGLSQQGLILPALQLMNEMAENGCLPN 399



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 132/335 (39%), Gaps = 14/335 (4%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA-----HLHT 59
           R    D   ++KL+ V+ KKG    +  L  ++   G  P+   +N  +        L  
Sbjct: 210 RCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDR 269

Query: 60  RDKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
             +   + +A  Y +KM   G E   P+ +TYN ++    +   V   N + K+      
Sbjct: 270 AVRNSRVVEAEEYLRKMVNGGFE---PDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGF 326

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
            PD +TY  +++ + K+G      +V         +P I+ +N LI    ++       Q
Sbjct: 327 KPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQ 386

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           +   +  +   P + T+N +I    K      A ++     A    P   TY  +I   G
Sbjct: 387 LMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLID--G 444

Query: 238 YCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           YC    +  A E+ + +   G    V T N +L   C  G   E   +F+     G TP+
Sbjct: 445 YCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPN 504

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             TY ++  +  KA        LL  M+  G+ P+
Sbjct: 505 IITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPD 539



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/332 (18%), Positives = 122/332 (36%), Gaps = 38/332 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH----LHTRDKAKALAKA 69
           Y  ++  +G  G+      L SEMR +       V NAL+       +    +   + +A
Sbjct: 43  YKCIVQKLGHHGEFEEMEKLLSEMREN-------VNNALLEGAYIEAMKNYGRKGKVQEA 95

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +  F++M     C P++ ++N ++    +    +Q + ++  + +  +  D+YTY   + 
Sbjct: 96  VDTFERMD-FYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIK 154

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           ++ K         +L  M    C  + + +  ++         D   ++F  ++     P
Sbjct: 155 SFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCP 214

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  FN ++    K  L  ++E +  K+      P+  T+   I + G C      RE  
Sbjct: 215 DVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFN--IFVQGLC------RE-- 264

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
                             L+    N    EA+       N G  PD  TY  +   Y K 
Sbjct: 265 ----------------GALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKK 308

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            M +   ++LK     G  P++  +   +  F
Sbjct: 309 GMVQDANRVLKDAVFKGFKPDEFTYCSLINGF 340



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/307 (18%), Positives = 114/307 (37%), Gaps = 17/307 (5%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY-TYNG 126
           KAL  F   K  +  K    TY  +++        +++  L  E+ E++    +   Y  
Sbjct: 22  KALEMFNSAKSEDGFKHTASTYKCIVQKLGHHGEFEEMEKLLSEMRENVNNALLEGAYIE 81

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
            M  YG+ G ++E      RM    C P + + N +++   +    ++  +V+  +    
Sbjct: 82  AMKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRG 141

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            +  + T+   I ++ K      A  + + M  +    + + Y  ++           AR
Sbjct: 142 VQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHAR 201

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           E+FDE+        V   N ++   C  GL  E++ L       GV P+  T+ +  +  
Sbjct: 202 ELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGL 261

Query: 307 TKANMKEL---------VQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDL 357
            +    +           ++ L++M   G  P+         T++S + G        D 
Sbjct: 262 CREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDL-------TYNSIIDGYCKKGMVQDA 314

Query: 358 TRSLSTA 364
            R L  A
Sbjct: 315 NRVLKDA 321



 Score = 42.4 bits (98), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 87/200 (43%), Gaps = 31/200 (15%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M+KQ      T  Y+ +++   ++    +AM LFS M+NSGC PD   Y  +I       
Sbjct: 566 MEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMG 625

Query: 61  DKAKALAKALGYFQKMKGME-RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
           +  +      GY   ++ ME R  P++ T+  +L  C   ++         ++HE++   
Sbjct: 626 NITQ------GYKFLLENMEKRFIPSLTTFGRVLN-CLCVKD---------KVHEAV--- 666

Query: 120 DIYTYNGVMDAYGKNGMIKE-MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
                 G++    + G++ E + ++    K     P I+  +LL   +    A+   E +
Sbjct: 667 ------GIIHLMLQKGIVPETVNTIFEADKKVVAAPKILVEDLLKKGH---IAYYTYELL 717

Query: 179 FKSLMHSK-EKPTLPTFNSM 197
           +  +   K  K  LPT NS+
Sbjct: 718 YDGIRDKKILKKRLPTVNSL 737


>gi|115489794|ref|NP_001067384.1| Os12g0638900 [Oryza sativa Japonica Group]
 gi|77556813|gb|ABA99609.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113649891|dbj|BAF30403.1| Os12g0638900 [Oryza sativa Japonica Group]
 gi|125580213|gb|EAZ21359.1| hypothetical protein OsJ_37016 [Oryza sativa Japonica Group]
          Length = 859

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 150/314 (47%), Gaps = 10/314 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           +++Q  +  D   Y+ +I ++G+  Q      L  EM +  C+P    YN +I    H  
Sbjct: 356 LKRQPGFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRII----HAY 411

Query: 61  DKAKALAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
            +A  L +A+  F++M+  G E   P+ VTY  L+   A+   ++    L+  + E  L+
Sbjct: 412 GRANYLREAVKVFEEMQKAGYE---PDRVTYCTLIDIHAKGGYLEFAMDLYTRMQEVGLS 468

Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
           PD +TY+ +++  GK G +     +   M  N C P+++T+N++I    K + ++ + ++
Sbjct: 469 PDTFTYSAMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKL 528

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           +K +  +  +P   T++ ++   G      +AE VF +M    + P    Y  ++ ++G 
Sbjct: 529 YKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMR-HDWAPDEPVYGLLVDLWGK 587

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
             NV +A   +  + + G    V T N++L A+       +A  + +N    G+ P   T
Sbjct: 588 AGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQT 647

Query: 299 YKLLYKAYTKANMK 312
           Y LL    T+A  +
Sbjct: 648 YTLLLSCCTEAQAQ 661



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 144/347 (41%), Gaps = 66/347 (19%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-----------LHTR-- 60
           Y+++I   G+    R A+ +F EM+ +G  PD   Y  LI  H           L+TR  
Sbjct: 404 YNRIIHAYGRANYLREAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEFAMDLYTRMQ 463

Query: 61  ------------------DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
                              K   LA A   F +M     C PN+VTYNI++   A+ARN 
Sbjct: 464 EVGLSPDTFTYSAMVNCLGKGGHLAAAYKLFCEMV-ENGCTPNLVTYNIMIALQAKARNY 522

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
           + V  L+K++  +   PD  TY+ VM+  G  G + E E+V   M+ +   PD   + LL
Sbjct: 523 ENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRHDWA-PDEPVYGLL 581

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           +D +GK    DK    + +++    +P +PT NS++  + K      A  V Q M A   
Sbjct: 582 VDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQGL 641

Query: 223 TPSFITYECIIT-------MYGYC-------------------------DNV-SRAREIF 249
            PS  TY  +++         G C                          NV    R   
Sbjct: 642 VPSLQTYTLLLSCCTEAQAQMGLCCQLMAITGHPAHMFLLYLPDAEPGGQNVRDHTRYFL 701

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
           D +    ++ K   ++A+++    +GL  EA  ++E +    V PDS
Sbjct: 702 DMMHSEDRESKRGLMDAVIDFLHKSGLKEEAGFIWEVAAQRNVYPDS 748



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 118/251 (47%), Gaps = 3/251 (1%)

Query: 81  RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140
            CKP +VTYN ++ A  +A  + +   +F+E+ ++   PD  TY  ++D + K G ++  
Sbjct: 396 HCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEFA 455

Query: 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200
             + +RM+     PD  T++ +++  GK        ++F  ++ +   P L T+N MI  
Sbjct: 456 MDLYTRMQEVGLSPDTFTYSAMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIAL 515

Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL-SKLGKDM 259
             KAR       +++ M    + P  ITY  ++ + G+C ++  A  +F E+      D 
Sbjct: 516 QAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRHDWAPDE 575

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            V  L  +++ +   G   +A   +      G+ P+  T   L  A+ K N  +    +L
Sbjct: 576 PVYGL--LVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVL 633

Query: 320 KRMEQNGIVPN 330
           + M   G+VP+
Sbjct: 634 QNMLAQGLVPS 644



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 17/270 (6%)

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           ALG+FQ +K     K +  +Y  ++    QAR    +  L  E++     P + TYN ++
Sbjct: 349 ALGFFQWLKRQPGFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRII 408

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
            AYG+   ++E   V   M+    +PD +T+  LID + K    +    ++  +      
Sbjct: 409 HAYGRANYLREAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEFAMDLYTRMQEVGLS 468

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   T+++M+   GK      A  +F +M     TP+ +TY  +I +       ++AR  
Sbjct: 469 PDTFTYSAMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQ------AKARN- 521

Query: 249 FDELSKLGKDMKVS-------TLNAMLEAYCMNGLPTEADLLF-ENSHNMGVTPDSSTYK 300
           ++ + KL KDM+V+       T + ++E     G   EA+ +F E  H+    PD   Y 
Sbjct: 522 YENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRHDW--APDEPVYG 579

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           LL   + KA   +        M Q+G+ PN
Sbjct: 580 LLVDLWGKAGNVDKALGWYHAMLQDGLQPN 609



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 85/189 (44%)

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           K D  ++  +I   G+ + F  M ++   +     KPT+ T+N +I  YG+A    +A  
Sbjct: 363 KHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREAVK 422

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
           VF++M    Y P  +TY  +I ++     +  A +++  + ++G      T +AM+    
Sbjct: 423 VFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEFAMDLYTRMQEVGLSPDTFTYSAMVNCLG 482

Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332
             G    A  LF      G TP+  TY ++     KA   E V KL K M+  G  P+K 
Sbjct: 483 KGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKI 542

Query: 333 FFLEALETF 341
            +   +E  
Sbjct: 543 TYSIVMEVL 551


>gi|255661172|gb|ACU25755.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 426

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 155/327 (47%), Gaps = 5/327 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R    D   YS LI   GK+G    A+    +M       D  +Y+ LI       D 
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +KA++     F ++K   R  P++V YN ++    +A+   +  +L  E+  + + P+  
Sbjct: 61  SKAIS----IFSRLK-RSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTA 115

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           +Y+ ++  Y +N    E  SV + M+  +C  D+ T N++ID YG+     + +++F  +
Sbjct: 116 SYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM 175

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                +P + ++N+++  YG A L G+A ++F+ M       + +TY  ++ +YG     
Sbjct: 176 RKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEH 235

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +A  +  E+   G +    T + ++  +   G    A +LF+   + GV  D   Y+ +
Sbjct: 236 EKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTM 295

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVP 329
             AY ++ +    ++LL  +++   +P
Sbjct: 296 IVAYERSGLVAHAKRLLHELKRPDNIP 322



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 109/217 (50%)

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
           E  L+PD YTY+ ++  +GK G+     S L +M+ ++   D++ ++ LI+   K   + 
Sbjct: 2   ERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYS 61

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
           K   +F  L  S+  P L  +N+MI  +GKA+L  +A  +  +M     TP+  +Y  ++
Sbjct: 62  KAISIFSRLKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
           TMY        A  +F E+ ++   + ++T N M++ Y   G+  EAD LF     MG+ 
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           P+  +Y  L + Y  A +      L + M++  I  N
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQN 218



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 149/360 (41%), Gaps = 42/360 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+  +  D   Y+ +I V GK    R A  L SEMR +G  P+ + Y+ L+T ++     
Sbjct: 71  KRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVEN--- 127

Query: 63  AKALAKALGYFQKMK--------------------------------GMER--CKPNIVT 88
            K   +AL  F +M+                                GM +   +PN+V+
Sbjct: 128 -KKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVS 186

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           YN LLR    A    +   LF+ +    +  ++ TYN +M  YGK    ++  +++  M+
Sbjct: 187 YNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQ 246

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
           +   +P+ IT++ +I  +GK    D+   +F+ L  S        + +MI+ Y ++ L  
Sbjct: 247 NRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERSGLVA 306

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
            A+ +  ++      P  I  +  I +      +  A  +F +    G+   ++    M+
Sbjct: 307 HAKRLLHELK----RPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMI 362

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             +           +F+    +G  PDS+   L+  AY K +  +    +   M++ G V
Sbjct: 363 HLFSKYKKYGNVVEVFDKMCGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVGCV 422


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 140/309 (45%), Gaps = 7/309 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK- 62
           +R YI +   Y+ LI  +  + +   A  LF  M+  GC P+   Y  LI     T +  
Sbjct: 154 RRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVN 213

Query: 63  -AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            A  L K +       G+  CKP ++TY+I++    +    D+   LF+E+    + PD+
Sbjct: 214 IALKLHKEMLNDASQYGV-NCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDV 272

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
            +Y+ ++  +   G   + + +   M     +PD++TF++LID+  K     + +++ + 
Sbjct: 273 ISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEV 332

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           ++     P L T+NS+I  +        A  +F  M +    P  I+Y  +I   GYC  
Sbjct: 333 MIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLIN--GYCKT 390

Query: 242 --VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
             V  A  +++E+ ++GK   V+T   +L+     G   +A  LF      GV+ +S  Y
Sbjct: 391 WKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIY 450

Query: 300 KLLYKAYTK 308
            +      K
Sbjct: 451 GIFLDGLCK 459



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 149/352 (42%), Gaps = 40/352 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I  + K G+   A  LF EM+  G  PD   Y+ LI    H    A    ++   F
Sbjct: 240 YSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLI----HGFCCAGKWDQSKHLF 295

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            +M   +  +P++VT+++L+    +   V +   L + + +  + P++ TYN ++D +  
Sbjct: 296 DEMVD-QGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCM 354

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G +     +   M S   +PD I++  LI+ Y K     +   ++  ++   + P + T
Sbjct: 355 VGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTT 414

Query: 194 FNSMIIN-------------YGKARLQG----------------------KAEYVFQKMT 218
           + +++               +G  +  G                      +A  +F ++ 
Sbjct: 415 YGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELK 474

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           +  +  +   Y C+I        +  A E+F++LS+ G    V T N M+  +C  G   
Sbjct: 475 SYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVD 534

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            A++LFE     G TPD   Y  L   + + N  E V KLL +M Q  + PN
Sbjct: 535 NANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPN 586



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 152/360 (42%), Gaps = 50/360 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSG------CRPDPSVYNALITA--HLHTRDKAKA 65
           Y  LI  + + G   +A+ L  EM N        C+P    Y+ +I     +   D+AK 
Sbjct: 199 YGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKE 258

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           L      F++MK  +   P++++Y+ L+     A   DQ   LF E+ +  + PD+ T++
Sbjct: 259 L------FEEMKA-QGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFS 311

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++D   K G + E + +L  M      P++IT+N LID +      +   ++F S+   
Sbjct: 312 VLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSK 371

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI------------- 232
             +P   ++ ++I  Y K     +A  ++ +M  +  +P+  TY  +             
Sbjct: 372 GLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDA 431

Query: 233 --------------------ITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEA 270
                               I + G C N  +  A E+F+EL      + +   + +++ 
Sbjct: 432 KKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDG 491

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            C  G    A  LFE     G+ PD  TY ++   + K    +    L ++ME+NG  P+
Sbjct: 492 LCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPD 551



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 146/324 (45%), Gaps = 13/324 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           +++L+  + K         L++EMR +G  PD    + L     +    ++ALA   G  
Sbjct: 94  FNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGIL 153

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++        PN+VTY  L++       + +   LF  + +    P+  TY  ++    +
Sbjct: 154 RRGY-----IPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQ 208

Query: 134 NGMI-------KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
            G +       KEM +  S+   N CKP +IT++++ID   K    D+ +++F+ +    
Sbjct: 209 TGNVNIALKLHKEMLNDASQYGVN-CKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQG 267

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
             P + +++++I  +  A    +++++F +M      P  +T+  +I        V+ A+
Sbjct: 268 MIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAK 327

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
           ++ + + + G    + T N++++ +CM G    A  LF +  + G+ PD  +Y  L   Y
Sbjct: 328 KLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGY 387

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
            K    +    L   M Q G  PN
Sbjct: 388 CKTWKVKEAMNLYNEMLQVGKSPN 411



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 110/259 (42%), Gaps = 18/259 (6%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P I ++N LL   A+  +  Q+ +L+ E+  + L+PD++T + + +       + E  + 
Sbjct: 89  PPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAA 148

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI----- 198
           ++ +      P+++T+  LI          +  ++F  +      P   T+ ++I     
Sbjct: 149 MAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQ 208

Query: 199 -------INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
                  +   K  L   ++Y       +   P  ITY  II           A+E+F+E
Sbjct: 209 TGNVNIALKLHKEMLNDASQY------GVNCKPGVITYSIIIDGLCKVGREDEAKELFEE 262

Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
           +   G    V + + ++  +C  G   ++  LF+   + GV PD  T+ +L     K   
Sbjct: 263 MKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGK 322

Query: 312 KELVQKLLKRMEQNGIVPN 330
               +KLL+ M Q GIVPN
Sbjct: 323 VTEAKKLLEVMIQRGIVPN 341



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 82/166 (49%), Gaps = 5/166 (3%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           A++ IY   +  + K      AM LF+E+++   + +   Y+ LI        KA  L  
Sbjct: 445 ANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLC----KAGKLET 500

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A   F+K+   E  +P++VTYNI++    +   VD  N LF+++ E+   PDI  YN ++
Sbjct: 501 AWELFEKLS-QEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLL 559

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
             + +   ++E+  +L +M      P+  +  +++D   K + + K
Sbjct: 560 CGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCKDEKYKK 605



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 109/260 (41%), Gaps = 9/260 (3%)

Query: 90  NILLRACAQARNVDQVNAL--FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           ++ LR C +  N+  + A   F  +  S   P I ++N ++    K     ++ S+ + M
Sbjct: 59  SLFLRNC-KTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEM 117

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           +     PD+ T ++L +         +       ++     P + T+ ++I         
Sbjct: 118 RLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRI 177

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA----REIFDELSKLGKDMK--V 261
            +A  +F +M  +  TP+ +TY  +I       NV+ A    +E+ ++ S+ G + K  V
Sbjct: 178 SEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGV 237

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T + +++  C  G   EA  LFE     G+ PD  +Y  L   +  A   +  + L   
Sbjct: 238 ITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDE 297

Query: 322 MEQNGIVPNKRFFLEALETF 341
           M   G+ P+   F   ++T 
Sbjct: 298 MVDQGVQPDMVTFSVLIDTL 317



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    K  + + AM L++EM   G  P+ + Y  L+   L  + K     K  G  
Sbjct: 380 YTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKG-LFQKGKVGDAKKLFGVM 438

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            K  G+     N   Y I L    +   + +   LF EL       +I  Y+ ++D   K
Sbjct: 439 -KTYGVSA---NSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCK 494

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G ++    +  ++     +PD++T+N++I  + K    D    +F+ +  +   P +  
Sbjct: 495 AGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIA 554

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
           +N+++  + +     +   +  KM     +P+  +   ++ M
Sbjct: 555 YNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDM 596



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 5/133 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS LI  + K G+   A  LF ++   G +PD   YN +I    H   K   +  A   F
Sbjct: 485 YSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMI----HGFCKVGQVDNANILF 540

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +KM+    C P+I+ YN LL    +   +++V  L  ++ +  ++P+  +   V+D   K
Sbjct: 541 EKMEE-NGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCK 599

Query: 134 NGMIKEMESVLSR 146
           +   K+   +L +
Sbjct: 600 DEKYKKFVDLLPK 612


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 152/322 (47%), Gaps = 10/322 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSE-MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           + + L+  + K  +   AM LF E +R   C  D   +N LI   L    KA+   KAL 
Sbjct: 173 VVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCN-DTKTFNILIRG-LCGVGKAE---KALE 227

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE-SILAPDIYTYNGVMDA 130
               M G   C+P+IVTYN L++   ++  +++ + +FK++   S+ +PD+ TY  ++  
Sbjct: 228 LLGVMSGFG-CEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISG 286

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           Y K G ++E  S+L  M      P  +TFN+L+D Y K       E++   ++     P 
Sbjct: 287 YCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPD 346

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           + TF S+I  Y +     +   ++++M A    P+  TY  +I      + + +ARE+  
Sbjct: 347 VVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLG 406

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT-KA 309
           +L+      +    N +++ +C  G   EA+++ E        PD  T+ +L   +  K 
Sbjct: 407 QLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKG 466

Query: 310 NMKELVQKLLKRMEQNGIVPNK 331
            M E V  +  +M   G  P+K
Sbjct: 467 RMFEAVS-IFHKMVAIGCSPDK 487



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 141/323 (43%), Gaps = 7/323 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  ++ LI  +   G+   A+ L   M   GC PD   YN LI        K+  L KA
Sbjct: 205 DTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFC----KSNELNKA 260

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F+ +K    C P++VTY  ++    +A  + + ++L  ++    + P   T+N ++D
Sbjct: 261 SEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVD 320

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y K G +   E +  +M S  C PD++TF  LID Y +     +  ++++ +      P
Sbjct: 321 GYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFP 380

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T++ +I          KA  +  ++ +    P    Y  +I  +     V+ A  I 
Sbjct: 381 NAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIV 440

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +E+ K        T   ++  +CM G   EA  +F     +G +PD  T   L     KA
Sbjct: 441 EEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKA 500

Query: 310 NM-KEL--VQKLLKRMEQNGIVP 329
            M KE   + ++ ++ + N +VP
Sbjct: 501 GMAKEAYHLNQIARKGQSNNVVP 523



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 142/332 (42%), Gaps = 8/332 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L   + K G   LA  +F  M++ G  P+  +   L+++         A A  L  F
Sbjct: 106 YNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSF 165

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +    +E C    +  N LL    +   V+    LF E        D  T+N ++     
Sbjct: 166 E----VEGC---CMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCG 218

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH-SKEKPTLP 192
            G  ++   +L  M    C+PDI+T+N LI  + K    +K  ++FK +   S   P + 
Sbjct: 219 VGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVV 278

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+ SMI  Y KA    +A  +   M  +   P+ +T+  ++  Y     +  A EI  ++
Sbjct: 279 TYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKM 338

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G    V T  ++++ YC  G  ++   L+E  +  G+ P++ TY +L  A    N  
Sbjct: 339 ISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRL 398

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
              ++LL ++    I+P    +   ++ F  +
Sbjct: 399 LKARELLGQLASKDIIPQPFMYNPVIDGFCKA 430



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 130/320 (40%), Gaps = 10/320 (3%)

Query: 17  LIAVMGKKGQTRLAM-WLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQK 75
           L++   +KG+   A   L       GC     V N+L    L+T  K   +  A+  F +
Sbjct: 144 LVSSFAEKGKLHFATALLLQSFEVEGC---CMVVNSL----LNTLVKLDRVEDAMKLFDE 196

Query: 76  MKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG 135
               + C  +  T+NIL+R        ++   L   +      PDI TYN ++  + K+ 
Sbjct: 197 HLRFQSCN-DTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSN 255

Query: 136 MIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
            + +   +   +KS   C PD++T+  +I  Y K     +   +   ++     PT  TF
Sbjct: 256 ELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTF 315

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N ++  Y KA     AE +  KM +    P  +T+  +I  Y     VS+   +++E++ 
Sbjct: 316 NVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNA 375

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
            G      T + ++ A C      +A  L     +  + P    Y  +   + KA     
Sbjct: 376 RGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNE 435

Query: 315 VQKLLKRMEQNGIVPNKRFF 334
              +++ ME+    P+K  F
Sbjct: 436 ANVIVEEMEKKKCKPDKITF 455


>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
          Length = 579

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 147/332 (44%), Gaps = 29/332 (8%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT-----AHLHTRDKA----- 63
           ++ +I  +GK       +++ S+M  + C+P+   Y+  +        LH  ++      
Sbjct: 236 FNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICS 295

Query: 64  ------------KALAK------ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQV 105
                       K+L K      A   F +M             ++L   C   + ++ +
Sbjct: 296 RFMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAI 355

Query: 106 NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
           + L   + E  +  D+  YN V  A GK   +  + ++  +MK+N   PD+ T+N++I S
Sbjct: 356 D-LLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISS 414

Query: 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
           YG+    DK  ++F+ +  S  KP + T+NS+I   GK     +A  +F++M    Y P 
Sbjct: 415 YGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPD 474

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
             TY  +I  +G  + V  A  +FDE+   G    + T N +L+     G   EA  L+E
Sbjct: 475 VFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYE 534

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
                G+ PDS TY +L +  +++     ++K
Sbjct: 535 TMKQQGLIPDSITYSILERLESRSQRTVRIRK 566



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 166/377 (44%), Gaps = 45/377 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ+  + D   Y+ LI + GK G+T   +  F EM + GC  +   +N +I A      K
Sbjct: 190 KQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEA----LGK 245

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K + K +    KM   + C+PN  TY+I L   A    + ++N +  ++    +   IY
Sbjct: 246 NKMVDKVIFVLSKMVEND-CQPNQFTYSITLDILATEGQLHRLNEVL-DICSRFMNRSIY 303

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD--------------------------- 155
           +Y  ++ +  K+G   E  +V  RM ++  K D                           
Sbjct: 304 SY--LVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMM 361

Query: 156 ----IIT----FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
               I+T    +N++  + GK +    +  +F  +  +   P + T+N MI +YG+  L 
Sbjct: 362 PEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLV 421

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            KA  +F+ M A    P  +TY  +I   G   ++  A  +F E+ + G D  V T + +
Sbjct: 422 DKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSIL 481

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +E +  +     A  LF+   + G TP+  TY +L     +    E   KL + M+Q G+
Sbjct: 482 IECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGL 541

Query: 328 VPNKRFF--LEALETFS 342
           +P+   +  LE LE+ S
Sbjct: 542 IPDSITYSILERLESRS 558



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 108/195 (55%), Gaps = 5/195 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  ++  + D G+Y+ + + +GK  Q      LF +M+ +G  PD   YN +I+++    
Sbjct: 360 MMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSY---- 415

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +   + KA   F+ M+    CKP++VTYN L+    +  ++D+ + LFKE+ E    PD
Sbjct: 416 GRVGLVDKASELFEVMEA-SSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPD 474

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           ++TY+ +++ +GK+  ++   S+   M S  C P+I+T+N+L+D   +R   ++  ++++
Sbjct: 475 VFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYE 534

Query: 181 SLMHSKEKPTLPTFN 195
           ++      P   T++
Sbjct: 535 TMKQQGLIPDSITYS 549



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 145/373 (38%), Gaps = 38/373 (10%)

Query: 5   RWYIADTG-IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +W +  +G  Y  ++    +  +      ++ EMR  G + D   YN L+ A      KA
Sbjct: 121 KWGLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDA----LAKA 176

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
             + +A   F+ MK  + C P+  TY IL+R   +A    +  + F E+       ++  
Sbjct: 177 GMVDQAFQVFEDMK-QKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIA 235

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV----- 178
           +N +++A GKN M+ ++  VLS+M  N C+P+  T+++ +D         ++ +V     
Sbjct: 236 FNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICS 295

Query: 179 ---------------------------FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 211
                                      F  + +S EK     F SM+     A    +A 
Sbjct: 296 RFMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAI 355

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
            +   M           Y  + +  G    VS    +FD++   G    V T N M+ +Y
Sbjct: 356 DLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSY 415

Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
              GL  +A  LFE        PD  TY  L     K    +    L K M++ G  P+ 
Sbjct: 416 GRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDV 475

Query: 332 RFFLEALETFSSS 344
             +   +E F  S
Sbjct: 476 FTYSILIECFGKS 488



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 144/357 (40%), Gaps = 47/357 (13%)

Query: 10  DTGIYSKLIAVMGK-KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           D   Y++++A++ + +     A+ L ++M   G   + S  N L+       +  + L  
Sbjct: 59  DAFSYNRILALLFRTRAGPSEALRLVADMERDGVAGNISTINLLVGMGGGGVEMERCLEL 118

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A  +  ++ G         TY  +++A  ++R V +   +++E+       DI+ YN ++
Sbjct: 119 ASKWGLRLSGY--------TYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLL 170

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           DA  K GM+ +   V   MK   C PD  T+ +LI   GK     K    F  ++     
Sbjct: 171 DALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCV 230

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             L  FN++I   GK ++  K  +V  KM      P+  TY   + +      + R  E+
Sbjct: 231 LNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEV 290

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF---ENSH----------------- 288
            D  S+    M  S  + ++++ C +G  +EA  +F    NSH                 
Sbjct: 291 LDICSRF---MNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCN 347

Query: 289 ---------------NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                            G+  D   Y +++ A  K      +  L  +M+ NGI+P+
Sbjct: 348 AEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPD 404


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 150/332 (45%), Gaps = 27/332 (8%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ L+    ++G  + A+ + + M   GC P     N LI  +     K   +  A
Sbjct: 219 DETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYC----KLGRVEDA 274

Query: 70  LGYFQK--MKGMERCKPNIVTYNILLRACAQARNVDQ----VNALFKELHESILAPDIYT 123
           LGY Q+    G E   P+ +TYN  +    Q  +V      ++ + +E H+    PD++T
Sbjct: 275 LGYIQQEIANGFE---PDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHD----PDVFT 327

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY--GKR--QAFDKMEQV- 178
           YN V++   KNG ++E + +L++M    C PDI TFN LI +   G R  +A D   QV 
Sbjct: 328 YNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVT 387

Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
            K L      P + TFN +I    K      A  +F++M +   TP  +TY  +I     
Sbjct: 388 LKGL-----SPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCS 442

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
              + +A ++  E+   G      T N +++  C      EA+ +F+     G++ ++ T
Sbjct: 443 LGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT 502

Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +  L     K    +   +L+ +M   G+ PN
Sbjct: 503 FNTLIDGLCKDKRIDDANQLISQMISEGLQPN 534



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 141/327 (43%), Gaps = 5/327 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           Q  +  D   Y+ ++  + K GQ   A  + ++M   GC PD + +N LI A        
Sbjct: 318 QEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLE 377

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           +AL   L     +KG+    P++ T+NIL+ A  +  +      LF+E+  S   PD  T
Sbjct: 378 EALD--LARQVTLKGL---SPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVT 432

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           YN ++D     G + +   +L  M+S  C    +T+N +ID   K+   ++ E+VF  + 
Sbjct: 433 YNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMD 492

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
                    TFN++I    K +    A  +  +M +    P+ ITY  I+T Y    ++ 
Sbjct: 493 LQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIK 552

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           +A +I   ++  G ++ V T   ++   C  G    A  L       G+      Y  + 
Sbjct: 553 KAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVI 612

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
           ++  + N       L + M + G  P+
Sbjct: 613 QSLFRRNNTRDAMNLFREMTEVGEPPD 639



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 145/322 (45%), Gaps = 13/322 (4%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+  +  + + G    A+ +   M   G  PD   YN ++        K   L +A
Sbjct: 289 DQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLC----KNGQLEEA 344

Query: 70  LGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
            G   +M  +ER C P+I T+N L+ A      +++   L +++    L+PD+YT+N ++
Sbjct: 345 KGILNQM--VERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILI 402

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           +A  K G  +    +   MKS+ C PD +T+N LID+        K   + K +  +   
Sbjct: 403 NALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCP 462

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAR 246
            +  T+N++I    K     +AE VF +M     + + IT+  +I   G C +  +  A 
Sbjct: 463 RSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLID--GLCKDKRIDDAN 520

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
           ++  ++   G      T N++L  YC  G +   AD+L   + N G   D  TY  L   
Sbjct: 521 QLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTAN-GFEVDVVTYGTLING 579

Query: 306 YTKANMKELVQKLLKRMEQNGI 327
             KA   ++  KLL+ M   G+
Sbjct: 580 LCKAGRTQVALKLLRGMRIKGM 601



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 129/291 (44%), Gaps = 5/291 (1%)

Query: 41  GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR 100
           G + D  VYN L+   L    K K L      + +M G    KP++VT+N L++A  +A 
Sbjct: 145 GIQADTVVYNHLLNV-LVEGSKMKLLETV---YSEM-GERGIKPDVVTFNTLMKALCRAH 199

Query: 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160
            V     + +E+  S +APD  T+  +M  + + G IK    V +RM    C P  +T N
Sbjct: 200 QVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVN 259

Query: 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
           +LI+ Y K    +      +  + +  +P   T+N+ +    +    G A  V   M   
Sbjct: 260 VLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQE 319

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
            + P   TY  ++        +  A+ I +++ + G    ++T N ++ A C      EA
Sbjct: 320 GHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEA 379

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             L       G++PD  T+ +L  A  K    +L  +L + M+ +G  P++
Sbjct: 380 LDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDE 430



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 131/305 (42%), Gaps = 9/305 (2%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           L +EMR  G +    V ++ + ++   +    A+   L     + G++    + V YN L
Sbjct: 100 LVTEMRREGHQVRVGVVHSFLESYARQQLFVDAVDLVLNQLDPLFGIQ---ADTVVYNHL 156

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           L    +   +  +  ++ E+ E  + PD+ T+N +M A  +   ++    +L  M S+  
Sbjct: 157 LNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGV 216

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK-ARLQGKAE 211
            PD  TF  L+  + +  +     +V   ++     PT  T N +I  Y K  R++    
Sbjct: 217 APDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALG 276

Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLE 269
           Y+ Q++ A  + P  ITY   +   G C N  V  A ++ D + + G D  V T N ++ 
Sbjct: 277 YIQQEI-ANGFEPDQITYNTFVN--GLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVN 333

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             C NG   EA  +       G  PD +T+  L  A    N  E    L +++   G+ P
Sbjct: 334 CLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSP 393

Query: 330 NKRFF 334
           +   F
Sbjct: 394 DVYTF 398



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 140/332 (42%), Gaps = 7/332 (2%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R    D   ++ L+  + +  Q R A+ +  EM +SG  PD + +  L+   +    + 
Sbjct: 178 ERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFV----EE 233

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIY 122
            ++  AL    +M  M  C P  VT N+L+   C   R  D +  + +E+      PD  
Sbjct: 234 GSIKAALRVKARMLEMG-CSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANG-FEPDQI 291

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN  ++   +NG +     V+  M      PD+ T+N++++   K    ++ + +   +
Sbjct: 292 TYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 351

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
           +     P + TFN++I+         +A  + +++T    +P   T+  +I       + 
Sbjct: 352 VERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDP 411

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
             A  +F+E+   G      T N +++  C  G   +A  L +   + G    + TY  +
Sbjct: 412 QLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTI 471

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
                K    E  +++  +M+  GI  N   F
Sbjct: 472 IDGLCKKMRIEEAEEVFDQMDLQGISRNAITF 503



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 119/279 (42%), Gaps = 38/279 (13%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT--AHLHTRDKAKALA 67
           D   ++ LI  + K G  +LA+ LF EM++SGC PD   YN LI     L    KA  L 
Sbjct: 394 DVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLL 453

Query: 68  KAL-----------------GYFQKMK--------------GMERCKPNIVTYNILLRAC 96
           K +                 G  +KM+              G+ R   N +T+N L+   
Sbjct: 454 KEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR---NAITFNTLIDGL 510

Query: 97  AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
            + + +D  N L  ++    L P+  TYN ++  Y K G IK+   +L  M +N  + D+
Sbjct: 511 CKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDV 570

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           +T+  LI+   K        ++ + +     + T   +N +I +  +      A  +F++
Sbjct: 571 VTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFRE 630

Query: 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
           MT +   P   TY+  I   G C      RE FD L ++
Sbjct: 631 MTEVGEPPDAFTYK--IVFRGLCRGGGSIREAFDFLLEM 667


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 152/322 (47%), Gaps = 10/322 (3%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSE-MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
           + + L+  + K  +   AM LF E +R   C  D   +N LI   L    KA+   KAL 
Sbjct: 173 VVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCN-DTKTFNILIRG-LCGVGKAE---KALE 227

Query: 72  YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE-SILAPDIYTYNGVMDA 130
               M G   C+P+IVTYN L++   ++  +++ + +FK++   S+ +PD+ TY  ++  
Sbjct: 228 LLGVMSGFG-CEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISG 286

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
           Y K G ++E  S+L  M      P  +TFN+L+D Y K       E++   ++     P 
Sbjct: 287 YCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPD 346

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           + TF S+I  Y +     +   ++++M A    P+  TY  +I      + + +ARE+  
Sbjct: 347 VVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLG 406

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT-KA 309
           +L+      +    N +++ +C  G   EA+++ E        PD  T+ +L   +  K 
Sbjct: 407 QLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKG 466

Query: 310 NMKELVQKLLKRMEQNGIVPNK 331
            M E V  +  +M   G  P+K
Sbjct: 467 RMFEAVS-IFHKMVAIGCSPDK 487



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 141/323 (43%), Gaps = 7/323 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  ++ LI  +   G+   A+ L   M   GC PD   YN LI        K+  L KA
Sbjct: 205 DTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFC----KSNELNKA 260

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F+ +K    C P++VTY  ++    +A  + + ++L  ++    + P   T+N ++D
Sbjct: 261 SEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVD 320

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y K G +   E +  +M S  C PD++TF  LID Y +     +  ++++ +      P
Sbjct: 321 GYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFP 380

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T++ +I          KA  +  ++ +    P    Y  +I  +     V+ A  I 
Sbjct: 381 NAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIV 440

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           +E+ K        T   ++  +CM G   EA  +F     +G +PD  T   L     KA
Sbjct: 441 EEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKA 500

Query: 310 NM-KEL--VQKLLKRMEQNGIVP 329
            M KE   + ++ ++ + N +VP
Sbjct: 501 GMAKEAYHLNQIARKGQSNNVVP 523



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 142/332 (42%), Gaps = 8/332 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L   + K G   LA  +F  M++ G  P+  +   L+++         A A  L  F
Sbjct: 106 YNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSF 165

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           +    +E C    +  N LL    +   V+    LF E        D  T+N ++     
Sbjct: 166 E----VEGC---CMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCG 218

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH-SKEKPTLP 192
            G  ++   +L  M    C+PDI+T+N LI  + K    +K  ++FK +   S   P + 
Sbjct: 219 VGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVV 278

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           T+ SMI  Y KA    +A  +   M  +   P+ +T+  ++  Y     +  A EI  ++
Sbjct: 279 TYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKM 338

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G    V T  ++++ YC  G  ++   L+E  +  G+ P++ TY +L  A    N  
Sbjct: 339 ISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRL 398

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
              ++LL ++    I+P    +   ++ F  +
Sbjct: 399 LKARELLGQLASKDIIPQPFMYNPVIDGFCKA 430



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 130/320 (40%), Gaps = 10/320 (3%)

Query: 17  LIAVMGKKGQTRLAM-WLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQK 75
           L++   +KG+   A   L       GC     V N+L    L+T  K   +  A+  F +
Sbjct: 144 LVSSFAEKGKLHFATALLLQSFEVEGC---CMVVNSL----LNTLVKLDRVEDAMKLFDE 196

Query: 76  MKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG 135
               + C  +  T+NIL+R        ++   L   +      PDI TYN ++  + K+ 
Sbjct: 197 HLRFQSCN-DTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSN 255

Query: 136 MIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
            + +   +   +KS   C PD++T+  +I  Y K     +   +   ++     PT  TF
Sbjct: 256 ELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTF 315

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N ++  Y KA     AE +  KM +    P  +T+  +I  Y     VS+   +++E++ 
Sbjct: 316 NVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNA 375

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
            G      T + ++ A C      +A  L     +  + P    Y  +   + KA     
Sbjct: 376 RGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNE 435

Query: 315 VQKLLKRMEQNGIVPNKRFF 334
              +++ ME+    P+K  F
Sbjct: 436 ANVIVEEMEKKKCKPDKITF 455


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 131/287 (45%), Gaps = 6/287 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS +I     +G+T  A  LF EM   G +PD   YN +I A      KA+A+ KA
Sbjct: 264 DVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALC----KARAMDKA 319

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
               ++M   +  +P+ VTY+ ++   A    + +   +F+E+ +  L P+I T N  + 
Sbjct: 320 ELVLRQMT-TDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLA 378

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           +  K+G  KE       M +   KPDI ++  L+  Y     F  M  +F S+  +    
Sbjct: 379 SLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAA 438

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               F  +I  Y K  +   A  +F +M     +P  +TY  +I+ +     ++ A E F
Sbjct: 439 NCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKF 498

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT-PD 295
           +++   G     +  +++++ +CM+G   +A  L     N G+  PD
Sbjct: 499 NQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPD 545



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 149/332 (44%), Gaps = 10/332 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K     A+  +++ LI    K+G    AM +F+EM+  G  PD   Y+ +I+    T  +
Sbjct: 432 KSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVIS----TFSR 487

Query: 63  AKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKE-LHESILAP 119
              L  A+  F +M  +G++   PN   Y+ +++       + +   L  E +++ I  P
Sbjct: 488 MGRLTDAMEKFNQMVARGIQ---PNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRP 544

Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
           DI  ++ V+++  K+G + +   +         +P +ITFN LID Y      DK  ++ 
Sbjct: 545 DIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKIL 604

Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
            ++     +P + T+N+++  Y K         +F++M      P+ +TY  ++      
Sbjct: 605 DAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRA 664

Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
                AR+ F E+ + G  + VS    +L   C N    EA +LF+    M V    +  
Sbjct: 665 GRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITIL 724

Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
             +  A  K   KE  ++L   +  +G++PN+
Sbjct: 725 NTMINAMYKVQRKEEAKELFATISASGLLPNE 756



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 144/333 (43%), Gaps = 10/333 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+    +  +  L + LF  +  +G + D    N L+    +     +A+   L   
Sbjct: 160 YNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNVLLHRM 219

Query: 74  QKMKGMERCKPNIVTYNILLRA-CAQA---RNVDQVNALFKELHESILAPDIYTYNGVMD 129
            ++     C PN V+Y+I+L+A C  +   R +D +  + K+      +PD+  Y+ V+ 
Sbjct: 220 SELG----CVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQ--GGACSPDVVAYSTVIH 273

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +   G   +  S+   M     KPD++T+NL+ID+  K +A DK E V + +     +P
Sbjct: 274 GFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQP 333

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T++ MI  Y       +A  +F++M      P+ +T    +           A E F
Sbjct: 334 DTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFF 393

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           D ++  G    + +   +L  Y   G   +   LF +  + G+  +   + +L  AY K 
Sbjct: 394 DSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKR 453

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            M +    +   M+Q G+ P+   +   + TFS
Sbjct: 454 GMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFS 486



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 132/311 (42%), Gaps = 7/311 (2%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           L   M   GC P+   Y+ ++ A        +AL   L    K  G   C P++V Y+ +
Sbjct: 215 LLHRMSELGCVPNAVSYSIVLKALCDNSMSQRAL-DLLQMMAKQGGA--CSPDVVAYSTV 271

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +          +  +LF E+    + PD+ TYN ++DA  K   + + E VL +M ++  
Sbjct: 272 IHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGA 331

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           +PD +T++ +I  Y       +  ++F+ +      P + T NS + +  K     +A  
Sbjct: 332 QPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAE 391

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI--FDELSKLGKDMKVSTLNAMLEA 270
            F  MTA  + P   +Y C + ++GY      A  I  F+ +   G          ++ A
Sbjct: 392 FFDSMTAKGHKPDIFSY-CTL-LHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHA 449

Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           Y   G+  +A L+F      GV+PD  TY  +   +++        +   +M   GI PN
Sbjct: 450 YAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPN 509

Query: 331 KRFFLEALETF 341
              +   ++ F
Sbjct: 510 TAVYSSIIQGF 520



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 120/312 (38%), Gaps = 46/312 (14%)

Query: 67  AKALGYFQKM----KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A AL  F ++     G +   P   TYNIL+  C +AR  D   ALF  +  + L  D  
Sbjct: 134 ALALALFNRVCREEAGTQVAVPTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQI 193

Query: 123 TYNGVMDAYGKNGMIKEMESVL-SRMKSNQCKPDIITFNL----LIDSYGKRQAFDKMEQ 177
           T N ++         +E  +VL  RM    C P+ +++++    L D+   ++A D ++ 
Sbjct: 194 TANTLLKCLCYANRTEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQM 253

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF----------- 226
           + K        P +  ++++I  +      GKA  +F +MT     P             
Sbjct: 254 MAKQ--GGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALC 311

Query: 227 ------------------------ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
                                   +TY C+I  Y     +  A ++F E+ K G    + 
Sbjct: 312 KARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIV 371

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T N+ L + C +G   EA   F++    G  PD  +Y  L   Y        +  L   M
Sbjct: 372 TCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSM 431

Query: 323 EQNGIVPNKRFF 334
           + NGI  N   F
Sbjct: 432 KSNGIAANCHVF 443



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 113/254 (44%), Gaps = 19/254 (7%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--LHTRDKAKALA 67
           D   +S +I  + K G+   A  +F    + G RP    +N+LI  +  +   DKA  + 
Sbjct: 545 DIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKIL 604

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            A+    ++ G+E   P+IVTYN LL    +   ++    LF+E+    + P+  TY G+
Sbjct: 605 DAM----EVVGVE---PDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTY-GI 656

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQ-----CKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           M A    G+ +   +V +R K ++         +  + +++    +    D+   +F+ L
Sbjct: 657 MLA----GLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKL 712

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                K ++   N+MI    K + + +A+ +F  ++A    P+  TY  +I        V
Sbjct: 713 GTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGGV 772

Query: 243 SRAREIFDELSKLG 256
             A  +F  + K G
Sbjct: 773 EDANNMFSSMEKSG 786



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 99/253 (39%), Gaps = 9/253 (3%)

Query: 25  GQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM--KGMERC 82
           G+   A  +   M   G  PD   YN L+  +     K   +   L  F++M  KG+   
Sbjct: 595 GKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYF----KNGRINDGLTLFREMQRKGV--- 647

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           KPN VTY I+L    +A         F E+ ES     +  Y  ++    +N    E   
Sbjct: 648 KPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAII 707

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +  ++ +   K  I   N +I++  K Q  ++ +++F ++  S   P   T+  MIIN  
Sbjct: 708 LFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLL 767

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           K      A  +F  M      P       II M      +++A     ++      ++ S
Sbjct: 768 KDGGVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRILLEAS 827

Query: 263 TLNAMLEAYCMNG 275
           T + ML  +   G
Sbjct: 828 TTSLMLSLFSRKG 840


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 158/370 (42%), Gaps = 50/370 (13%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R    D G  + ++  +  +G    A+ L  ++ + GC PD   YNA++        K  
Sbjct: 223 RGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVL--------KGL 274

Query: 65  ALAKALGYFQK-MKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            +AK  G  Q+ M+ M R  C PNIVT+N L+    +    ++V+ +  ++ E    PDI
Sbjct: 275 CMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDI 334

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI------------------------- 156
             Y  ++D   K G ++    +L+RM S   KP++                         
Sbjct: 335 RMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAE 394

Query: 157 ----------ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
                     +TFN+L+D + +    D++ ++ + ++     P + T+ ++I  + K  L
Sbjct: 395 MFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGL 454

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTL 264
             +A  + + MTA    P+ I+Y   I + G C  +    A ++  ++ + G  +   T 
Sbjct: 455 IDEAVMLLKSMTACGCKPNTISYT--IVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITF 512

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N ++   C  GL  +A  L +     G +PD  +Y  +     KA   +   +LL  M  
Sbjct: 513 NTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVN 572

Query: 325 NGIVPNKRFF 334
            G+ PN   +
Sbjct: 573 KGMSPNTIIY 582



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 149/354 (42%), Gaps = 36/354 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---------------HLH 58
           Y  ++  +  +G+   A+ +  EM   GC P P +Y+ ++ A                LH
Sbjct: 162 YFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLH 221

Query: 59  TRDKA----------------KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
            R  A                 ++ +AL   + +     C+P++V+YN +L+    A+  
Sbjct: 222 ARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSF-GCEPDVVSYNAVLKGLCMAKRW 280

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
             V  L +E+      P+I T+N ++    +NG+ + +  VL++M  + C PDI  +  +
Sbjct: 281 GCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATI 340

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           ID   K    +   ++   +     KP +  +N+++     A    + E +  +M     
Sbjct: 341 IDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDC 400

Query: 223 TPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
               +T+  ++    +C N  V R  E+ +++ + G    V T   ++  +C  GL  EA
Sbjct: 401 PLDDVTFNILVDF--FCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEA 458

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            +L ++    G  P++ +Y ++ K    A      + L+ +M Q G   N   F
Sbjct: 459 VMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITF 512



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 143/326 (43%), Gaps = 7/326 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ +I  + K+G   +A  + + M + G +P+   YN L+   L + ++ +   + 
Sbjct: 333 DIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKG-LCSAERWEETEEL 391

Query: 70  LG-YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           L   F K      C  + VT+NIL+    Q   VD+V  L +++ E    PD+ TY  V+
Sbjct: 392 LAEMFDK-----DCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVI 446

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + + K G+I E   +L  M +  CKP+ I++ +++      + +   E +   ++     
Sbjct: 447 NGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCP 506

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
               TFN++I    K  L  +A  + ++M     +P  I+Y  +I   G       A E+
Sbjct: 507 LNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALEL 566

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            + +   G        +++  A    G   +   +F+N  +  +  D+  Y  +  +  K
Sbjct: 567 LNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCK 626

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
               E   + L  M  +G VPN+  +
Sbjct: 627 RGETERAIEFLAYMVSSGCVPNESTY 652



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/277 (20%), Positives = 118/277 (42%), Gaps = 14/277 (5%)

Query: 49  YNALITAHLHTR--DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQV 105
           YNA++  +      + A+ LA A+             PN  TY  ++RA CA+ R  D +
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAVPV----------PPNAYTYFPVVRALCARGRIADAL 179

Query: 106 NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
            A+  E+     AP    Y+ +++A  + G  +    VL  + +  C  D+   NL++++
Sbjct: 180 -AVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNA 238

Query: 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
              + + D+   + + L     +P + ++N+++     A+  G  + + ++M  M   P+
Sbjct: 239 ICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPN 298

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
            +T+  +I+         R  E+  ++ + G    +     +++  C  G    A  +  
Sbjct: 299 IVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILN 358

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
              + G+ P+   Y  L K    A   E  ++LL  M
Sbjct: 359 RMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEM 395


>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Vitis vinifera]
          Length = 531

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 145/328 (44%), Gaps = 42/328 (12%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ L+    K G    A+  F+ M + GC+PD   ++ +I+    +  K +   +A  +F
Sbjct: 184 FTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVIS----SLSKKRRAIEAQSFF 239

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             +K  +R +P++V Y  L+    +A N+ +   +F E+  + + P++YTY+ V+DA  +
Sbjct: 240 DSLK--DRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCR 297

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
           +G I     V S M    C P+ ITFN L+  + K    +K+ Q                
Sbjct: 298 SGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQ---------------- 341

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
                              V+ +M  +   P  ITY  +I  +   DN+  A +I + + 
Sbjct: 342 -------------------VYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVK 382

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           K G ++  S+ N +       G    A  +F    ++   P++ TY +L + +      +
Sbjct: 383 K-GCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTD 441

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETF 341
           +V KL K M++N I PN   +   + TF
Sbjct: 442 MVLKLRKEMDENEIEPNANTYRVLISTF 469



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 152/322 (47%), Gaps = 12/322 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   +S +I+ + KK +   A   F  +++    PD  VY +L+    H   +A  +++A
Sbjct: 215 DKIAFSVVISSLSKKRRAIEAQSFFDSLKDR-FEPDVVVYTSLV----HGWCRAGNISEA 269

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F +MK M   +PN+ TY+I++ A  ++  + + + +F E+ +    P+  T+N +M 
Sbjct: 270 ERVFGEMK-MAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMR 328

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            + K G  +++  V ++MK   C PD IT+N LI+S+ +    D +E+  K L   K+  
Sbjct: 329 VHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRD---DNLEEAVKILNSVKKGC 385

Query: 190 TL--PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
            L   +FN +     K      A  +F KM  +K  P+ +TY  ++ M+    +     +
Sbjct: 386 NLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLK 445

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF-ENSHNMGVTPDSSTYKLLYKAY 306
           +  E+ +   +   +T   ++  +C  G    A   F E      + P    Y+++ +  
Sbjct: 446 LRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQL 505

Query: 307 TKANMKELVQKLLKRMEQNGIV 328
            KA   +  ++L+++M   G V
Sbjct: 506 RKAGQLKKHEELVEKMVNRGFV 527



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 113/254 (44%), Gaps = 2/254 (0%)

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
             + L +F     +E    +   Y  ++    + R  D    L   +    +   + T+ 
Sbjct: 126 FPQTLAFFNWATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFT 185

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
            ++  Y K G+  E     +RM+   CKPD I F+++I S  K++   + +  F SL   
Sbjct: 186 ILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSL-KD 244

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
           + +P +  + S++  + +A    +AE VF +M      P+  TY  +I        ++RA
Sbjct: 245 RFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRA 304

Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            ++F E+  +G D    T N ++  +   G   +   ++     +G  PD+ TY  L ++
Sbjct: 305 HDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIES 364

Query: 306 YTK-ANMKELVQKL 318
           + +  N++E V+ L
Sbjct: 365 HCRDDNLEEAVKIL 378


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 158/370 (42%), Gaps = 50/370 (13%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R    D G  + ++  +  +G    A+ L  ++ + GC PD   YNA++        K  
Sbjct: 186 RGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVL--------KGL 237

Query: 65  ALAKALGYFQK-MKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
            +AK  G  Q+ M+ M R  C PNIVT+N L+    +    ++V+ +  ++ E    PDI
Sbjct: 238 CMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDI 297

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI------------------------- 156
             Y  ++D   K G ++    +L+RM S   KP++                         
Sbjct: 298 RMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAE 357

Query: 157 ----------ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
                     +TFN+L+D + +    D++ ++ + ++     P + T+ ++I  + K  L
Sbjct: 358 MFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGL 417

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTL 264
             +A  + + MTA    P+ I+Y   I + G C  +    A ++  ++ + G  +   T 
Sbjct: 418 IDEAVMLLKSMTACGCKPNTISYT--IVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITF 475

Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
           N ++   C  GL  +A  L +     G +PD  +Y  +     KA   +   +LL  M  
Sbjct: 476 NTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVN 535

Query: 325 NGIVPNKRFF 334
            G+ PN   +
Sbjct: 536 KGMSPNTIIY 545



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 149/354 (42%), Gaps = 36/354 (10%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---------------HLH 58
           Y  ++  +  +G+   A+ +  EM   GC P P +Y+ ++ A                LH
Sbjct: 125 YFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLH 184

Query: 59  TRDKA----------------KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
            R  A                 ++ +AL   + +     C+P++V+YN +L+    A+  
Sbjct: 185 ARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFG-CEPDVVSYNAVLKGLCMAKRW 243

Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
             V  L +E+      P+I T+N ++    +NG+ + +  VL++M  + C PDI  +  +
Sbjct: 244 GCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATI 303

Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
           ID   K    +   ++   +     KP +  +N+++     A    + E +  +M     
Sbjct: 304 IDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDC 363

Query: 223 TPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
               +T+  ++    +C N  V R  E+ +++ + G    V T   ++  +C  GL  EA
Sbjct: 364 PLDDVTFNILVDF--FCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEA 421

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
            +L ++    G  P++ +Y ++ K    A      + L+ +M Q G   N   F
Sbjct: 422 VMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITF 475



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 143/326 (43%), Gaps = 7/326 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ +I  + K+G   +A  + + M + G +P+   YN L+   L + ++ +   + 
Sbjct: 296 DIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKG-LCSAERWEETEEL 354

Query: 70  LG-YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           L   F K      C  + VT+NIL+    Q   VD+V  L +++ E    PD+ TY  V+
Sbjct: 355 LAEMFDK-----DCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVI 409

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           + + K G+I E   +L  M +  CKP+ I++ +++      + +   E +   ++     
Sbjct: 410 NGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCP 469

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
               TFN++I    K  L  +A  + ++M     +P  I+Y  +I   G       A E+
Sbjct: 470 LNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALEL 529

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
            + +   G        +++  A    G   +   +F+N  +  +  D+  Y  +  +  K
Sbjct: 530 LNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCK 589

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
               E   + L  M  +G VPN+  +
Sbjct: 590 RGETERAIEFLAYMVSSGCVPNESTY 615



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/277 (20%), Positives = 118/277 (42%), Gaps = 14/277 (5%)

Query: 49  YNALITAHLHTR--DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQV 105
           YNA++  +      + A+ LA A+             PN  TY  ++RA CA+ R  D +
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVPV----------PPNAYTYFPVVRALCARGRIADAL 142

Query: 106 NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
            A+  E+     AP    Y+ +++A  + G  +    VL  + +  C  D+   NL++++
Sbjct: 143 -AVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNA 201

Query: 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
              + + D+   + + L     +P + ++N+++     A+  G  + + ++M  M   P+
Sbjct: 202 ICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPN 261

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
            +T+  +I+         R  E+  ++ + G    +     +++  C  G    A  +  
Sbjct: 262 IVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILN 321

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
              + G+ P+   Y  L K    A   E  ++LL  M
Sbjct: 322 RMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEM 358



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 108/253 (42%), Gaps = 5/253 (1%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R  + D   Y+ +I    K+G    A+ L   M   GC+P+   Y    T  L     A
Sbjct: 395 ERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISY----TIVLKGLCSA 450

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           +    A     +M   + C  N +T+N L+    +   V+Q   L K++  +  +PD+ +
Sbjct: 451 ERWVDAEDLMSQMI-QQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLIS 509

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ V+D  GK G   E   +L+ M +    P+ I ++ +  +  +    +K+ Q+F ++ 
Sbjct: 510 YSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQ 569

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
            +  +     +N++I +  K     +A      M +    P+  TY  +I        V 
Sbjct: 570 DTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVK 629

Query: 244 RAREIFDELSKLG 256
            A+E+  EL   G
Sbjct: 630 EAQEMLTELCSKG 642


>gi|147845950|emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera]
          Length = 790

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 115/229 (50%)

Query: 89  YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
           Y  +L +   A    +   L  ++HE  ++ D   YN V+ A GK     ++  +  +MK
Sbjct: 469 YMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMK 528

Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
            +   PDI ++N+LI S+G+    ++  ++F+ L +S  KP + +FNS+I   GK     
Sbjct: 529 QDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDID 588

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           +A   F++M     +P  +TY  +I  +G  D V  A  +FDE+   G    + T N +L
Sbjct: 589 EAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILL 648

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
           +    +G   EA  L+      G+TPDS TY +L +  + ++ K  V++
Sbjct: 649 DCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVLERLQSGSHQKVRVRR 697



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 110/227 (48%), Gaps = 8/227 (3%)

Query: 6   WYIADTG---IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           W   D G    Y  ++  +   G+T  A+ L S++       D  +YN +++A      K
Sbjct: 458 WSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSA----LGK 513

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K  +     ++KMK  +   P+I +YNIL+ +  +A  V++   +F+EL  S   PDI 
Sbjct: 514 LKKTSDLHDLYEKMK-QDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDII 572

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           ++N +++  GKNG I E       M+     PD++T++ LI+ +GK    +   ++F  +
Sbjct: 573 SFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEM 632

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
           +     P + T+N ++    ++    +A  ++ K+     TP  ITY
Sbjct: 633 LAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITY 679



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/356 (20%), Positives = 144/356 (40%), Gaps = 41/356 (11%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ +I + GK G+   ++ LF EM   G  P+   YN +I A  + R     + K 
Sbjct: 326 DEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNR----MVDKT 381

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY----- 124
           +  F KM     C+PN  T++++L        + +++ +  E+    +   IY Y     
Sbjct: 382 IFLFSKMVE-NNCRPNGFTFSVILNVLVAEGQLGRLDEVV-EVSNKFMNKSIYAYLVRTL 439

Query: 125 -----------------------NGVMDAY-------GKNGMIKEMESVLSRMKSNQCKP 154
                                   G  DAY          G   E   +LS++   +   
Sbjct: 440 SKLGHASEAHRLLHLQYDWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKRIST 499

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           D + +N ++ + GK +    +  +++ +      P + ++N +I ++G+A    +A  +F
Sbjct: 500 DTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIF 559

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           +++      P  I++  +I   G   ++  A   F E+ + G    V T + ++E +   
Sbjct: 560 EELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKT 619

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                A  LF+     G +P+  TY +L     ++        L  +++Q G+ P+
Sbjct: 620 DKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPD 675



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 141/398 (35%), Gaps = 98/398 (24%)

Query: 14  YSKLIAVMGKKGQTR------LAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           Y++L+ ++ K    R      L   +  +M   G R   S  N LI              
Sbjct: 155 YNRLLVILSKPSALRDSERLDLIRAILDDMERCGVRGSISTINILI-------------- 200

Query: 68  KALGYFQKMKGMERC---------KPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
              G F     +ERC         + N  TY  LL+A  ++ N ++   ++ EL      
Sbjct: 201 ---GIFGGGADVERCFDLVKKWDLQMNCYTYKCLLQAHLRSNNSNKAFEVYVELRRRGYK 257

Query: 119 PDIYTYNGVMDAYGKNGM--------------------------------IKEMESVLSR 146
            DI+ YN ++DA  K+                                  + ++  V   
Sbjct: 258 LDIFAYNMLLDALAKDNKLTWNLLLVCLQIAELLDCLTVALDNDKIISVEVDQVYMVFKD 317

Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
           MK   C+PD  T+ ++I   GK    D+   +F+ +      P L  +N+MI      R+
Sbjct: 318 MKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRM 377

Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD---------------- 250
             K  ++F KM      P+  T+  I+ +      + R  E+ +                
Sbjct: 378 VDKTIFLFSKMVENNCRPNGFTFSVILNVLVAEGQLGRLDEVVEVSNKFMNKSIYAYLVR 437

Query: 251 ELSKLGKDMKVSTL------------------NAMLEAYCMNGLPTEADLLFENSHNMGV 292
            LSKLG   +   L                   +MLE+ C  G  TEA  L    H   +
Sbjct: 438 TLSKLGHASEAHRLLHLQYDWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKRI 497

Query: 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           + D+  Y  +  A  K      +  L ++M+Q+G  P+
Sbjct: 498 STDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPD 535



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/376 (18%), Positives = 150/376 (39%), Gaps = 42/376 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           ++R Y  D   Y+ L+  + K  +    + L        C     + + L  A  + +  
Sbjct: 252 RRRGYKLDIFAYNMLLDALAKDNKLTWNLLLV-------CLQIAELLDCLTVALDNDKII 304

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           +  + +    F+ MK  + C+P+  TY I++R   +    D+   LF+E+ E    P++ 
Sbjct: 305 SVEVDQVYMVFKDMK-RKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLI 363

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID---SYGKRQAFDKMEQVF 179
            YN ++ A   N M+ +   + S+M  N C+P+  TF+++++   + G+    D++ +V 
Sbjct: 364 AYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLVAEGQLGRLDEVVEVS 423

Query: 180 KSLM----------------HSKEKPTL---------------PTFNSMIINYGKARLQG 208
              M                H+ E   L                 + SM+ +   A    
Sbjct: 424 NKFMNKSIYAYLVRTLSKLGHASEAHRLLHLQYDWSFHDEGDRDAYMSMLESLCDAGKTT 483

Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
           +A  +  K+   + +   + Y  +++  G     S   ++++++ + G    + + N ++
Sbjct: 484 EALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILI 543

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
            ++   G   EA  +FE   N    PD  ++  L     K    +      K M + G+ 
Sbjct: 544 SSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLS 603

Query: 329 PNKRFFLEALETFSSS 344
           P+   +   +E F  +
Sbjct: 604 PDVVTYSTLIECFGKT 619


>gi|168054024|ref|XP_001779433.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669118|gb|EDQ55711.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 111/244 (45%), Gaps = 1/244 (0%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P+ +TY+ L+    +    D   A F  +HE+   PD+ TY+ ++D YGK G   E  +
Sbjct: 75  RPDNITYSTLISCANRCNYQDAAMAWFDRMHEAGCVPDVVTYSTMIDVYGKMGKYDEAIA 134

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           +  R+K    KPD +T+  ++  +G+         +F+ +  S  +P    +N MI   G
Sbjct: 135 LYERVKQAGWKPDKVTYGTMVRLFGRAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIACLG 194

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           +A   G A  VF++M      P+ +T   ++  Y  C NV    E+F  L + G    V 
Sbjct: 195 RAGRMGHALKVFEEMEREGVKPNAVTLSTVMETYSRCGNVMEGLEVFQRLRQ-GVACDVI 253

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
             NA+L+     GL +EA+         G  P+  TY+ +   Y K  M     +   +M
Sbjct: 254 VYNAVLKMCREAGLASEAEQYLREMTESGHQPNDWTYRNMISVYAKKGMAVEAHRTFSQM 313

Query: 323 EQNG 326
            + G
Sbjct: 314 VEAG 317



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 124/267 (46%), Gaps = 1/267 (0%)

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           K+  +AL  F+ ++       NI TYN++L+   + R  +    + +++  + + PD  T
Sbjct: 21  KSWRQALLLFRWLRAEHSSSLNIYTYNVMLKVLRRGRQWEFSQQIAEDMANADVRPDNIT 80

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y+ ++    +        +   RM    C PD++T++ +ID YGK   +D+   +++ + 
Sbjct: 81  YSTLISCANRCNYQDAAMAWFDRMHEAGCVPDVVTYSTMIDVYGKMGKYDEAIALYERVK 140

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
            +  KP   T+ +M+  +G+A     A  +F++M      P  I Y  +I   G    + 
Sbjct: 141 QAGWKPDKVTYGTMVRLFGRAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIACLGRAGRMG 200

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A ++F+E+ + G      TL+ ++E Y   G   E   +F+     GV  D   Y  + 
Sbjct: 201 HALKVFEEMEREGVKPNAVTLSTVMETYSRCGNVMEGLEVFQRLRQ-GVACDVIVYNAVL 259

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
           K   +A +    ++ L+ M ++G  PN
Sbjct: 260 KMCREAGLASEAEQYLREMTESGHQPN 286



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 116/248 (46%), Gaps = 6/248 (2%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           + D   YS +I V GK G+   A+ L+  ++ +G +PD   Y  ++        +A  + 
Sbjct: 110 VPDVVTYSTMIDVYGKMGKYDEAIALYERVKQAGWKPDKVTYGTMVRLF----GRAGYIR 165

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
            A+  F++MKG    +P+ + YNI++    +A  +     +F+E+    + P+  T + V
Sbjct: 166 AAVSIFEEMKG-SGVQPDAIVYNIMIACLGRAGRMGHALKVFEEMEREGVKPNAVTLSTV 224

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           M+ Y + G + E   V  R++      D+I +N ++    +     + EQ  + +  S  
Sbjct: 225 METYSRCGNVMEGLEVFQRLRQG-VACDVIVYNAVLKMCREAGLASEAEQYLREMTESGH 283

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +P   T+ +MI  Y K  +  +A   F +M    Y    + Y  ++  YG     ++ +E
Sbjct: 284 QPNDWTYRNMISVYAKKGMAVEAHRTFSQMVEAGYQIDVMAYTSLLQAYGNAKEYNKVQE 343

Query: 248 IFDELSKL 255
           I DE++ +
Sbjct: 344 ILDEMTSV 351



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 114/238 (47%), Gaps = 6/238 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ  +  D   Y  ++ + G+ G  R A+ +F EM+ SG +PD  VYN +I        +
Sbjct: 140 KQAGWKPDKVTYGTMVRLFGRAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIAC----LGR 195

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A  +  AL  F++M+  E  KPN VT + ++   ++  NV +   +F+ L + + A D+ 
Sbjct: 196 AGRMGHALKVFEEME-REGVKPNAVTLSTVMETYSRCGNVMEGLEVFQRLRQGV-ACDVI 253

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
            YN V+    + G+  E E  L  M  +  +P+  T+  +I  Y K+    +  + F  +
Sbjct: 254 VYNAVLKMCREAGLASEAEQYLREMTESGHQPNDWTYRNMISVYAKKGMAVEAHRTFSQM 313

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
           + +  +  +  + S++  YG A+   K + +  +MT++   P       I+ +   CD
Sbjct: 314 VEAGYQIDVMAYTSLLQAYGNAKEYNKVQEILDEMTSVNCAPDERLCCVILNLLDSCD 371



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 121/262 (46%), Gaps = 6/262 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   YS LI+   +      AM  F  M  +GC PD   Y+ +I  +     K     +A
Sbjct: 77  DNITYSTLISCANRCNYQDAAMAWFDRMHEAGCVPDVVTYSTMIDVY----GKMGKYDEA 132

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +  ++++K     KP+ VTY  ++R   +A  +    ++F+E+  S + PD   YN ++ 
Sbjct: 133 IALYERVK-QAGWKPDKVTYGTMVRLFGRAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIA 191

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
             G+ G +     V   M+    KP+ +T + ++++Y +     +  +VF+ L       
Sbjct: 192 CLGRAGRMGHALKVFEEMEREGVKPNAVTLSTVMETYSRCGNVMEGLEVFQRLRQGVACD 251

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +  +N+++    +A L  +AE   ++MT   + P+  TY  +I++Y        A   F
Sbjct: 252 VI-VYNAVLKMCREAGLASEAEQYLREMTESGHQPNDWTYRNMISVYAKKGMAVEAHRTF 310

Query: 250 DELSKLGKDMKVSTLNAMLEAY 271
            ++ + G  + V    ++L+AY
Sbjct: 311 SQMVEAGYQIDVMAYTSLLQAY 332


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 149/352 (42%), Gaps = 40/352 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI     +G+  +A  L +EM + G  P+   +NALI  H+   +  +AL   + Y 
Sbjct: 301 YNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALK--MFYM 358

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            + KG+    P+ V+Y +LL    +    D     +  +  + +     TY G++D   K
Sbjct: 359 MEAKGL---TPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCK 415

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP---- 189
           NG + E   +L+ M  +   PDI+T++ LI+ + K   F   +++   +      P    
Sbjct: 416 NGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGII 475

Query: 190 --TLP-----------------------------TFNSMIINYGKARLQGKAEYVFQKMT 218
             TL                              TFN ++ +  KA    +AE   + MT
Sbjct: 476 YSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMT 535

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           +    P+ ++++C+I  YG      +A  +FDE++K+G      T  ++L+  C  G   
Sbjct: 536 SDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLR 595

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           EA+   ++ H +    D+  Y  L  A  K+        L   M Q  I+P+
Sbjct: 596 EAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPD 647



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 146/346 (42%), Gaps = 5/346 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ ++    KKG+ + A+ L   M++ G   D   YN LI    H   ++  +AK     
Sbjct: 231 YNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLI----HDLCRSNRIAKGYLLL 286

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M+      PN VTYN L+   +    V   + L  E+    L+P+  T+N ++D +  
Sbjct: 287 RDMRK-RMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHIS 345

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G  KE   +   M++    P  +++ +L+D   K   FD     +  +  +       T
Sbjct: 346 EGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRIT 405

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +  MI    K     +A  +  +M+     P  +TY  +I  +        A+EI   + 
Sbjct: 406 YTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIY 465

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           ++G        + ++   C  G   EA  ++E     G T D  T+ +L  +  KA    
Sbjct: 466 RVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVA 525

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTR 359
             ++ ++ M  +GI+PN   F   +  + +S  G ++ S   ++T+
Sbjct: 526 EAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTK 571



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 131/290 (45%), Gaps = 5/290 (1%)

Query: 42  CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN 101
           C  +PSVY+ LI  +L    +   +  +L  F+ M G+    P++ T N +L +  ++  
Sbjct: 119 CNSNPSVYDILIRVYL----REGMIQDSLEIFRLM-GLYGFNPSVYTCNAILGSVVKSGE 173

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
              V +  KE+ +  + PD+ T+N +++     G  ++   ++ +M+ +   P I+T+N 
Sbjct: 174 DVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNT 233

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           ++  Y K+  F    ++   +        + T+N +I +  ++    K   + + M    
Sbjct: 234 VLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRM 293

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
             P+ +TY  +I  +     V  A ++ +E+   G      T NA+++ +   G   EA 
Sbjct: 294 IHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEAL 353

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
            +F      G+TP   +Y +L     K    +L +    RM++NG+   +
Sbjct: 354 KMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGR 403



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 134/299 (44%), Gaps = 20/299 (6%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            DT +Y+ L+  M K G    A+ LF EM      PD   Y +LI+       K K +  
Sbjct: 611 VDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCR---KGKTVIA 667

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI-LAPDIYTYNGV 127
            L + ++ +      PN V Y   +    +A    +    F+E  +++   PDI T N +
Sbjct: 668 IL-FAKEAEARGNVLPNKVMYTCFVDGMFKAGQW-KAGIYFREQMDNLGHTPDIVTTNAM 725

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D Y + G I++   +L  M +    P++ T+N+L+  Y KR+       +++S++ +  
Sbjct: 726 IDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGI 785

Query: 188 KPTLPTFNSMII-----NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN- 241
            P   T +S+++     N  +  L+    ++ + +   +YT + +  +C       C N 
Sbjct: 786 LPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKC-------CANG 838

Query: 242 -VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            ++ A ++   ++ LG  +   T +AM+     N    E+ ++       G++P+S  Y
Sbjct: 839 EINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKY 897



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 131/332 (39%), Gaps = 18/332 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ L+  + K G+   A      M + G  P+   ++ LI  + ++ +  KA +  
Sbjct: 507 DHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFS-- 564

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F +M  +    P   TY  LL+   +  ++ +     K LH    A D   YN ++ 
Sbjct: 565 --VFDEMTKVGH-HPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLT 621

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK- 188
           A  K+G + +  S+   M      PD  T+  LI    ++       +   +++ +KE  
Sbjct: 622 AMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKG------KTVIAILFAKEAE 675

Query: 189 ------PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 P    +   +    KA       Y  ++M  + +TP  +T   +I  Y     +
Sbjct: 676 ARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKI 735

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +  ++  E+        ++T N +L  Y      + + LL+ +    G+ PD  T   L
Sbjct: 736 EKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSL 795

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
                ++NM E+  K+LK     G+  ++  F
Sbjct: 796 VLGICESNMLEIGLKILKAFICRGVEVDRYTF 827



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 108/320 (33%), Gaps = 83/320 (25%)

Query: 37  MRNSGCRPDPSVYNALITAHLHTR----DKAKALAKALGYFQK---------MKGMERCK 83
           ++  G   D  V    IT H+  R    D A+ + K L              M     C 
Sbjct: 61  VKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRLCN 120

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
            N   Y+IL+R   +   +     +F+ +      P +YT N ++ +  K+G    + S 
Sbjct: 121 SNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSF 180

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L  M   +  PD+ TFN+LI+      +F+                              
Sbjct: 181 LKEMLKRKICPDVATFNILINVLCAEGSFE------------------------------ 210

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
                K+ Y+ QKM    Y P+ +TY                                  
Sbjct: 211 -----KSSYLMQKMEKSGYAPTIVTY---------------------------------- 231

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N +L  YC  G    A  L ++  + GV  D  TY +L     ++N       LL+ M 
Sbjct: 232 -NTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMR 290

Query: 324 QNGIVPNKRFFLEALETFSS 343
           +  I PN+  +   +  FS+
Sbjct: 291 KRMIHPNEVTYNTLINGFSN 310



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 141/354 (39%), Gaps = 42/354 (11%)

Query: 13   IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
            +Y+  +  M K GQ +  ++   +M N G  PD    NA+I  +     +   + K    
Sbjct: 686  MYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGY----SRMGKIEKTNDL 741

Query: 73   FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
              +M G +   PN+ TYNILL   ++ ++V     L++ +  + + PD  T + ++    
Sbjct: 742  LPEM-GNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGIC 800

Query: 133  KNGMIKEMESVLSRMKSNQCKPDIITFNLLID---SYGK-RQAFDKMEQVFKSLMHSKEK 188
            ++ M++    +L        + D  TFN+LI    + G+   AFD + +V  SL  S +K
Sbjct: 801  ESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFD-LVKVMTSLGISLDK 859

Query: 189  PTLPTFNSMI---INYGKARL-------QG----------------------KAEYVFQK 216
             T     S++     + ++R+       QG                       A  V ++
Sbjct: 860  DTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEE 919

Query: 217  MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
            M A K  P  +    ++     C     A  +   + K+     +++   ++   C NG 
Sbjct: 920  MIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGN 979

Query: 277  PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              EA  L     N G+  D  +Y +L           L  +L + M+ +G + N
Sbjct: 980  VIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLAN 1033



 Score = 44.3 bits (103), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 43/218 (19%), Positives = 87/218 (39%)

Query: 88   TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
            T+N+L+  C     ++    L K +    ++ D  T + ++    +N   +E   VL  M
Sbjct: 826  TFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEM 885

Query: 148  KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
                  P+   +  LI+   +         V + ++  K  P     ++M+    K    
Sbjct: 886  SKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKA 945

Query: 208  GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
             +A  + + M  MK  P+  ++  ++ +     NV  A E+   +S  G  + + + N +
Sbjct: 946  DEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVL 1005

Query: 268  LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            +   C  G    A  L+E     G   +++TYK L + 
Sbjct: 1006 ITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRG 1043


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 152/370 (41%), Gaps = 39/370 (10%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           AD  +Y+  I   GK G+  +A   F E+++ G  PD   Y ++I        K   L +
Sbjct: 266 ADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLC----KGNRLDE 321

Query: 69  ALGYFQKMKG-----------------------------MER-----CKPNIVTYNILLR 94
           A+  F++M+                              +ER     C P+++ YN +L 
Sbjct: 322 AVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILT 381

Query: 95  ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
              +   + +    F+E+ +   AP++ TYN ++D   K G ++    V   MK     P
Sbjct: 382 CLGKKGRLGEALRTFEEMKKDA-APNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFP 440

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           +++T N++ID   K +  D+   +F+ + H    P   TF S+I   GK      A  ++
Sbjct: 441 NVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLY 500

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           ++M      P+ + Y  +I  +  C       +IF E+   G    +  LNA ++     
Sbjct: 501 EQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKA 560

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           G   +   LFE   + G  PD  +Y +L     KA       +L   M++ G V +   +
Sbjct: 561 GETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAY 620

Query: 335 LEALETFSSS 344
              ++ F  S
Sbjct: 621 NTFIDGFCKS 630



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 159/369 (43%), Gaps = 51/369 (13%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI-----TAH 56
           QK R  I     Y+ ++  +GKKG+   A+  F EM+     P+ S YN LI        
Sbjct: 364 QKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAA-PNLSTYNVLIDMLCKAGE 422

Query: 57  LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
           +    K +   K  G F          PN++T NI++    +A+ +D+  ++F+ ++  I
Sbjct: 423 VEAAFKVRDAMKEAGLF----------PNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKI 472

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
            +PD  T+  ++D  GK G + +   +  +M  +   P+ + +  LI S+ K    +   
Sbjct: 473 CSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGH 532

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE------ 230
           ++FK ++H    P L   N+ +    KA   GK   +F+++ +  + P  ++Y       
Sbjct: 533 KIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGL 592

Query: 231 --------------------CIITMY-------GYCDN--VSRAREIFDELSKLGKDMKV 261
                               C++  +       G+C +  V++A ++ +E+   G+   V
Sbjct: 593 VKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTV 652

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T  ++++         EA +LFE + + G+  +   Y  L   + K    +    +++ 
Sbjct: 653 VTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEE 712

Query: 322 MEQNGIVPN 330
           + Q G+ PN
Sbjct: 713 LMQKGLTPN 721



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 147/337 (43%), Gaps = 5/337 (1%)

Query: 8   IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
           I +  +Y+ LI    K G+      +F EM + GC PD  + NA    ++    KA    
Sbjct: 509 IPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNA----YMDCVFKAGETG 564

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           K    F+++K      P++++Y+IL+    +A    +   LF  + E     D + YN  
Sbjct: 565 KGRALFEEIKS-RGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTF 623

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D + K+G + +   +L  MK+   +P ++T+  +ID   K    D+   +F+    +  
Sbjct: 624 IDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGL 683

Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
           +  +  ++S+I  +GK     +A  + +++     TP+  T+ C++      + ++ A  
Sbjct: 684 ELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALV 743

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
            F  +  L       T + ++   C      +A + ++     G+ P++ TY  +     
Sbjct: 744 CFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLA 803

Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           KA        L +R + NG VP+   +   +E  S S
Sbjct: 804 KAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYS 840



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 144/331 (43%), Gaps = 12/331 (3%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y     +++ +I V  ++G+   A+ L  EM+++    D  +YN  I        KA  +
Sbjct: 229 YEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCF----GKAGKV 284

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             A  +F ++K      P+ VTY  ++    +   +D+   +F+++ ++   P  Y YN 
Sbjct: 285 DMAWKFFHEIKS-HGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNT 343

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  YG  G   E  S+L R K+  C P +I +N ++   GK+    +  + F+  M   
Sbjct: 344 MIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEE-MKKD 402

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT---PSFITYECIITMYGYCDNVS 243
             P L T+N +I    KA   G+ E  F+   AMK     P+ +T   +I        + 
Sbjct: 403 AAPNLSTYNVLIDMLCKA---GEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLD 459

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
            A  IF+ ++         T  ++++     G   +A  L+E   +    P++  Y  L 
Sbjct: 460 EACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLI 519

Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           K++ K   KE   K+ K M   G  P+ R  
Sbjct: 520 KSFFKCGRKEDGHKIFKEMIHRGCSPDLRLL 550



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 131/316 (41%), Gaps = 6/316 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I   G  G+   A  L    +  GC P    YN ++T       K   L +AL  F
Sbjct: 341 YNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTC----LGKKGRLGEALRTF 396

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++MK  +   PN+ TYN+L+    +A  V+    +   + E+ L P++ T N ++D   K
Sbjct: 397 EEMK--KDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCK 454

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
              + E  S+   M    C PD +TF  LID  GK+   D   ++++ ++ S + P    
Sbjct: 455 AKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVV 514

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           + S+I ++ K   +     +F++M     +P        +          + R +F+E+ 
Sbjct: 515 YTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIK 574

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G    V + + ++      G   E   LF      G   D+  Y      + K+    
Sbjct: 575 SRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVN 634

Query: 314 LVQKLLKRMEQNGIVP 329
              +LL+ M+  G  P
Sbjct: 635 KAYQLLEEMKTKGRQP 650



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 139/324 (42%), Gaps = 6/324 (1%)

Query: 16  KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQK 75
           +LI    K  + R    L   MR    RP  S Y  LI A L +  ++  +   L  F +
Sbjct: 168 ELILSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGA-LSSVQESDIM---LTLFHQ 223

Query: 76  MKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG 135
           M+ +   + ++  +  ++R  A+   +D   +L  E+  + L  DI  YN  +D +GK G
Sbjct: 224 MQELGY-EVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAG 282

Query: 136 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195
            +         +KS+   PD +T+  +I    K    D+  ++F+ +  ++  P    +N
Sbjct: 283 KVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYN 342

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
           +MI+ YG A    +A  + ++  A    PS I Y CI+T  G    +  A   F+E+ K 
Sbjct: 343 TMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKD 402

Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
                +ST N +++  C  G    A  + +     G+ P+  T  ++     KA   +  
Sbjct: 403 AAP-NLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEA 461

Query: 316 QKLLKRMEQNGIVPNKRFFLEALE 339
             + + M      P++  F   ++
Sbjct: 462 CSIFEGMNHKICSPDEVTFCSLID 485



 Score = 42.4 bits (98), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 31/172 (18%), Positives = 69/172 (40%)

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           ++ L+    K   FD  EQ+   +  +   P+  T   +I++  K+    +   + Q M 
Sbjct: 131 YDSLLLVMAKNVKFDYFEQILGEMSIAGFGPSTKTCIELILSCIKSNKLREGFDLIQCMR 190

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
             K+ P+F  Y  +I              +F ++ +LG ++ V     ++  +   G   
Sbjct: 191 KFKFRPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLD 250

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            A  L +   +  +  D   Y +    + KA   ++  K    ++ +G++P+
Sbjct: 251 AALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPD 302


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 162/343 (47%), Gaps = 11/343 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           +T  Y+ +I+ + K+ Q   A  L   +   G  PD   YN+LI     +R+   A+   
Sbjct: 370 NTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAME-- 427

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
              +++MK  + C P+  TYN+L+ + C + +  + +N L KE+  S  A ++ TYN ++
Sbjct: 428 --LYKEMK-TKGCHPDEFTYNMLIDSLCFRGKLQEALN-LLKEMEVSGCARNVITYNTLI 483

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           D + KN  I E E +  +M+      + +T+N LID   K +  ++  Q+   ++    +
Sbjct: 484 DGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLR 543

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
           P   T+NS++  + KA    KA  + Q M +    P  +TY  +I        V  A ++
Sbjct: 544 PDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKL 603

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
              +   G ++     N +++A        EA  LF         PD+ TYK++++   +
Sbjct: 604 LRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQ 663

Query: 309 AN--MKELVQKLLKRMEQNGIVPN-KRFFLEALETFSSSLAGS 348
               + E V  +++ +E+ G VP    F++ A   FS ++ G+
Sbjct: 664 GGGPIGEAVDFVMEMLER-GYVPEFSSFYMLAEGLFSLAMVGT 705



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 148/330 (44%), Gaps = 11/330 (3%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  +  +  D   ++ L+  + K G  + A+ +   M   G  PD   YN+LI+      
Sbjct: 291 MSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLC--- 347

Query: 61  DKAKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
            K   + +A+    +M  +ER C PN VTYN ++    +   V++   L   L    + P
Sbjct: 348 -KLGEVDEAVKVLNQM--IERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILP 404

Query: 120 DIYTYNGVMDA--YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
           D+ TYN ++      +N  +  ME +   MK+  C PD  T+N+LIDS   R    +   
Sbjct: 405 DVCTYNSLIQGLCLSRNHTVA-ME-LYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALN 462

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           + K +  S     + T+N++I  + K +   +AE +F +M     + + +TY  +I    
Sbjct: 463 LLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLC 522

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
             + V  A ++ D++   G      T N++L  +C  G   +A  + +   + G  PD  
Sbjct: 523 KSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIV 582

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           TY  L     KA   E   KLL+ ++  GI
Sbjct: 583 TYGTLIAGLCKAGRVEAATKLLRTIQMKGI 612



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 145/353 (41%), Gaps = 31/353 (8%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD-------- 61
           D   ++ LI  + +  Q R A+ L  EM + G  PD   +  ++   +   +        
Sbjct: 194 DVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVK 253

Query: 62  -----------------------KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
                                  K   + +AL + ++M   E   P+  T+N+L+   ++
Sbjct: 254 EQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSK 313

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
             +V     +   +      PDIYTYN ++    K G + E   VL++M    C P+ +T
Sbjct: 314 TGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVT 373

Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
           +N +I +  K    ++  ++   L      P + T+NS+I     +R    A  ++++M 
Sbjct: 374 YNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMK 433

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
                P   TY  +I    +   +  A  +  E+   G    V T N +++ +C N    
Sbjct: 434 TKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIA 493

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
           EA+ +F+     GV+ +S TY  L     K+   E   +L+ +M   G+ P+K
Sbjct: 494 EAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDK 546



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 112/284 (39%), Gaps = 36/284 (12%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           +P++ T+NIL++A  +A  +     L +E+ +  L PD  T+  +M  + + G +     
Sbjct: 192 RPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMR 251

Query: 143 VLSRMKSNQCK------------------------------------PDIITFNLLIDSY 166
           V  +M    C                                     PD  TFN+L++  
Sbjct: 252 VKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGL 311

Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
            K        +V   ++     P + T+NS+I    K     +A  V  +M     +P+ 
Sbjct: 312 SKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNT 371

Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
           +TY  II+     + V  A ++   L+  G    V T N++++  C++   T A  L++ 
Sbjct: 372 VTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKE 431

Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
               G  PD  TY +L  +       +    LLK ME +G   N
Sbjct: 432 MKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARN 475



 Score = 51.2 bits (121), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 62/329 (18%), Positives = 127/329 (38%), Gaps = 5/329 (1%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ  +   + I+ +++  +GK G+      +  EM+ S    D    N  +   + +   
Sbjct: 81  KQPNFKPSSSIFKEVLHKLGKAGEFDAMKDILKEMKISLSVID----NDSLLVFIESYAS 136

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
                + L +   M+       N   YN LL        +  V      +    + PD+ 
Sbjct: 137 FGLYNEILQFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVS 196

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           T+N ++ A  +   I+    ++  M+     PD  TF  ++  + +    D   +V + +
Sbjct: 197 TFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQM 256

Query: 183 MHSKEKPTLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           + +    T  T N ++  + K  R++    ++ +      + P   T+  ++       +
Sbjct: 257 VEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGH 316

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           V  A E+ D + + G D  + T N+++   C  G   EA  +         +P++ TY  
Sbjct: 317 VKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNT 376

Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           +     K N  E   KL   +   GI+P+
Sbjct: 377 IISTLCKENQVEEATKLALVLTGKGILPD 405



 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 56/294 (19%), Positives = 116/294 (39%), Gaps = 5/294 (1%)

Query: 39  NSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
           NS  R  P   N   T  LH+  + +  +  +  F         KP+   +  +L    +
Sbjct: 45  NSATRLSP---NFTPTQLLHSLRREEDSSAVIHLFYWASKQPNFKPSSSIFKEVLHKLGK 101

Query: 99  ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN-QCKPDII 157
           A   D +  + KE+  S+   D  +    +++Y   G+  E+   +  M+       +  
Sbjct: 102 AGEFDAMKDILKEMKISLSVIDNDSLLVFIESYASFGLYNEILQFVDAMEVEFGVVANTH 161

Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
            +N L++          +E    +++    +P + TFN +I    +A     A  + ++M
Sbjct: 162 FYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEM 221

Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
                 P   T+  I+  +    N+  A  + +++ + G  +   T+N ++  +C  G  
Sbjct: 222 EDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRI 281

Query: 278 TEA-DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            EA   + E S   G  PD  T+ +L    +K    +   +++  M + G  P+
Sbjct: 282 EEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPD 335


>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
          Length = 579

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 147/332 (44%), Gaps = 29/332 (8%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT-----AHLHTRDKA----- 63
           ++ +I  +GK       +++ S+M  + C+P+   Y+  +        LH  ++      
Sbjct: 236 FNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICS 295

Query: 64  ------------KALAK------ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQV 105
                       K+L K      A   F +M             ++L   C   + ++ +
Sbjct: 296 RFMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAI 355

Query: 106 NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
           + L   + E  +  D+  YN V  A GK   +  + ++  +MK+N   PD+ T+N++I S
Sbjct: 356 D-LLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISS 414

Query: 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
           YG+    DK  ++F+ +  S  KP + T+NS+I   GK     +A  +F++M    Y P 
Sbjct: 415 YGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPD 474

Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
             TY  +I  +G  + V  A  +FDE+   G    + T N +L+     G   EA  L+E
Sbjct: 475 VFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYE 534

Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
                G+ PDS TY +L +  +++     ++K
Sbjct: 535 TMKQQGLIPDSITYSILERLESRSQRTVRIRK 566



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 166/377 (44%), Gaps = 45/377 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ+  + D   Y+ LI + GK G+T   +  F EM + GC  +   +N +I A      K
Sbjct: 190 KQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEA----LGK 245

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K + K +    KM   + C+PN  TY+I L   A    + ++N +  ++    +   IY
Sbjct: 246 NKMVDKVIFVLSKMVEND-CQPNQFTYSITLDILATEGQLHRLNEVL-DICSRFMNRSIY 303

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD--------------------------- 155
           +Y  ++ +  K+G   E  +V  RM ++  K D                           
Sbjct: 304 SY--LVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMM 361

Query: 156 ----IIT----FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
               I+T    +N++  + GK +    +  +F  +  +   P + T+N MI +YG+  L 
Sbjct: 362 PEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLV 421

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            KA  +F+ M A    P  +TY  +I   G   ++  A  +F E+ + G D  V T + +
Sbjct: 422 DKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSIL 481

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +E +  +     A  LF+   + G TP+  TY +L     +    E   KL + M+Q G+
Sbjct: 482 IECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGL 541

Query: 328 VPNKRFF--LEALETFS 342
           +P+   +  LE LE+ S
Sbjct: 542 IPDSITYSILERLESRS 558



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 108/195 (55%), Gaps = 5/195 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  ++  + D G+Y+ + + +GK  Q      LF +M+ +G  PD   YN +I+++    
Sbjct: 360 MMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSY---- 415

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +   + KA   F+ M+    CKP++VTYN L+    +  ++D+ + LFKE+ E    PD
Sbjct: 416 GRVGLVDKASELFEVMEA-SSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPD 474

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           ++TY+ +++ +GK+  ++   S+   M S  C P+I+T+N+L+D   +R   ++  ++++
Sbjct: 475 VFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYE 534

Query: 181 SLMHSKEKPTLPTFN 195
           ++      P   T++
Sbjct: 535 TMKQQGLIPDSITYS 549



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 135/344 (39%), Gaps = 37/344 (10%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           ++ EMR  G + D   YN L+ A      KA  + +A   F+ MK  + C P+  TY IL
Sbjct: 150 VYEEMRRKGYKLDIFAYNMLLDA----LAKAGMVDQAFQVFEDMK-QKHCVPDAYTYTIL 204

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           +R   +A    +  + F E+       ++  +N +++A GKN M+ ++  VLS+M  N C
Sbjct: 205 IRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDC 264

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQV--------------------------------FK 180
           +P+  T+++ +D         ++ +V                                F 
Sbjct: 265 QPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNVFC 324

Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
            + +S EK     F SM+     A    +A  +   M           Y  + +  G   
Sbjct: 325 RMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLK 384

Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            VS    +FD++   G    V T N M+ +Y   GL  +A  LFE        PD  TY 
Sbjct: 385 QVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYN 444

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
            L     K    +    L K M++ G  P+   +   +E F  S
Sbjct: 445 SLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKS 488



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 144/357 (40%), Gaps = 47/357 (13%)

Query: 10  DTGIYSKLIAVMGK-KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           D   Y++++A++ + +     A+ L ++M   G   + S  N L+       +  + L  
Sbjct: 59  DAFSYNRILALLFRTRAGPSEALRLVADMERDGVAGNISTINLLVGMGGGGVEVERCLEL 118

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A  +  ++ G         TY  +++A  ++R V +   +++E+       DI+ YN ++
Sbjct: 119 ASKWGLRLSGY--------TYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLL 170

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           DA  K GM+ +   V   MK   C PD  T+ +LI   GK     K    F  ++     
Sbjct: 171 DALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCV 230

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             L  FN++I   GK ++  K  +V  KM      P+  TY   + +      + R  E+
Sbjct: 231 LNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEV 290

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF---ENSH----------------- 288
            D  S+    M  S  + ++++ C +G  +EA  +F    NSH                 
Sbjct: 291 LDICSRF---MNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCN 347

Query: 289 ---------------NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                            G+  D   Y +++ A  K      +  L  +M+ NGI+P+
Sbjct: 348 AEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPD 404



 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           TY+CI+  +     VS+  ++++E+ + G  + +   N +L+A    G+  +A  +FE+ 
Sbjct: 130 TYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDM 189

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF---LEAL 338
                 PD+ TY +L +   KA            M   G V N   F   +EAL
Sbjct: 190 KQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEAL 243


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 141/321 (43%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  I++ LI    K G+   AM LFS+MR  G  PD   Y  ++ A         A+A+ 
Sbjct: 377 DHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQ- 435

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F ++   E   P+ V +  L+         D+   L  E+    + P+   +N +++
Sbjct: 436 ---FGRLIS-EGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLN 491

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K GM+   +++   M     + D+IT+N LID Y      D+  ++ + ++    KP
Sbjct: 492 HLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKP 551

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              T+N+MI  Y K      A  +F++M +    P  +TY  I+         + A+E++
Sbjct: 552 NEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELY 611

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             + K G    + T N +L   C N    +A  +F+N + +    ++ T+ ++  A  K 
Sbjct: 612 LWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKG 671

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
              +  + L   +   G+VPN
Sbjct: 672 GRHDEAKDLFASLLARGLVPN 692



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 134/318 (42%), Gaps = 5/318 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+  + K G++  A  +F  M   G +P+ + Y  L    LH      +L K 
Sbjct: 307 DVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTL----LHGYATEGSLVK- 361

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           + +   M      +P+   +NIL+    +   VD    LF ++    L PD  TY  VMD
Sbjct: 362 MHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMD 421

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
           A    G + +  +   R+ S    PD + F  LI     R  +DK E++   ++     P
Sbjct: 422 ALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICP 481

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               FN+++ +  K  +  +A+ +F  M  +      ITY  +I  Y     V  A ++ 
Sbjct: 482 NNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLL 541

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           + +   G      T N M+  YC NG   +A  LF    + GV P   TY  + +   +A
Sbjct: 542 EGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQA 601

Query: 310 NMKELVQKLLKRMEQNGI 327
                 ++L   M ++GI
Sbjct: 602 RRTAAAKELYLWMIKSGI 619



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 149/362 (41%), Gaps = 43/362 (11%)

Query: 7   YIADTGIYSKLIAVMGKKG-QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA 65
           Y  D   Y+ +I  + ++G Q   A  LF +M + G  PD   YN++I+A      KA+A
Sbjct: 198 YPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISA----LSKARA 253

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTY 124
           + KA     +M       PN +T+N LL   C+  +  D +  +FK +    + PD++TY
Sbjct: 254 MDKAAVVLVRMV-KNGAMPNRITHNSLLHGYCSSGKPNDAI-GVFKRMCRDGVEPDVFTY 311

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           N +M    KNG   E   +   M     KP+  T+  L+  Y    +  KM  +   ++ 
Sbjct: 312 NTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVR 371

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI---ITMYGYCDN 241
           +  +P    FN +I  Y K      A  +F KM      P  +TY  +   + M G  D+
Sbjct: 372 NGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDD 431

Query: 242 ------------------VSR-------AREIFDELSKLGKDMKVSTL-------NAMLE 269
                             V R       AR+ +D+  +L  +M    +       N +L 
Sbjct: 432 AMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLN 491

Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
             C  G+   A  +F+    + V  D  TY  L   Y      +   KLL+ M  +G+ P
Sbjct: 492 HLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKP 551

Query: 330 NK 331
           N+
Sbjct: 552 NE 553



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 143/328 (43%), Gaps = 13/328 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEM-----RNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           Y+ L+  +  + +++ A+ L   M        G  PD   YN +I   L    + + L  
Sbjct: 165 YTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLR---EGRQLDT 221

Query: 69  ALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
           A   F +M  +G+    P++VTYN ++ A ++AR +D+   +   + ++   P+  T+N 
Sbjct: 222 AYHLFDQMLDQGLS---PDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNS 278

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  Y  +G   +   V  RM  +  +PD+ T+N L+    K     +  ++F S++   
Sbjct: 279 LLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRG 338

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            KP   T+ +++  Y       K  ++   M      P    +  +I  Y     V  A 
Sbjct: 339 HKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAM 398

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            +F ++ + G +    T   +++A CM G   +A   F    + G+TPD+  ++ L    
Sbjct: 399 LLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGL 458

Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFF 334
              +  +  ++L   M   GI PN  FF
Sbjct: 459 CARDKWDKAEELAVEMIGRGICPNNIFF 486



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 139/332 (41%), Gaps = 39/332 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           YS +I    + G   LA      +  SG   +   ++ L+ A    +  ++A+  AL   
Sbjct: 94  YSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDIAL--- 150

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M  +  C PN+ +Y ILL+         Q   L   LH  ++A D  T  G       
Sbjct: 151 RRMPVLG-CTPNVFSYTILLKGLCDENRSQQALHL---LHTMMVADD--TRGGY------ 198

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-QAFDKMEQVFKSLMHSKEKPTLP 192
                               PD++++N +I+   +  +  D    +F  ++     P + 
Sbjct: 199 -------------------PPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVV 239

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFD 250
           T+NS+I    KAR   KA  V  +M      P+ IT+  +  ++GYC +   + A  +F 
Sbjct: 240 TYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSL--LHGYCSSGKPNDAIGVFK 297

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            + + G +  V T N ++   C NG   EA  +F++    G  P+S+TY  L   Y    
Sbjct: 298 RMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEG 357

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
               +  LL  M +NGI P+   F   + T++
Sbjct: 358 SLVKMHHLLDMMVRNGIQPDHYIFNILIGTYT 389



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 125/286 (43%), Gaps = 9/286 (3%)

Query: 67  AKALGYFQKMKGMERCK--PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
           A A+  F++M  + R K  PN++TY++++  C++  ++D   A    +  S    +  T+
Sbjct: 70  AVAISLFRRMVMVARPKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITF 129

Query: 125 NGVMDAYGKNGMIKE-MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           + ++ A        E M+  L RM    C P++ ++ +L+          +   +  ++M
Sbjct: 130 SPLLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMM 189

Query: 184 HSKEK-----PTLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
            + +      P + ++N++I    +  R    A ++F +M     +P  +TY  II+   
Sbjct: 190 VADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALS 249

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
               + +A  +   + K G      T N++L  YC +G P +A  +F+     GV PD  
Sbjct: 250 KARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVF 309

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
           TY  L     K       +K+   M + G  PN   +   L  +++
Sbjct: 310 TYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYAT 355



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 86/201 (42%), Gaps = 13/201 (6%)

Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY-GKARLQGKAEY 212
           P++IT++++ID   +    D        ++ S       TF+ ++     K R     + 
Sbjct: 89  PNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDI 148

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL--------GKDMKVSTL 264
             ++M  +  TP+  +Y   I + G CD  +R+++    L  +        G    V + 
Sbjct: 149 ALRRMPVLGCTPNVFSYT--ILLKGLCDE-NRSQQALHLLHTMMVADDTRGGYPPDVVSY 205

Query: 265 NAMLEAYCMNGLPTE-ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
           N ++      G   + A  LF+   + G++PD  TY  +  A +KA   +    +L RM 
Sbjct: 206 NTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMV 265

Query: 324 QNGIVPNKRFFLEALETFSSS 344
           +NG +PN+      L  + SS
Sbjct: 266 KNGAMPNRITHNSLLHGYCSS 286


>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 556

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 139/328 (42%), Gaps = 9/328 (2%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           IY+ LI    K G   LA  LF +M   G  P+   Y+ L+        + +        
Sbjct: 195 IYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREG------- 247

Query: 73  FQKMKGMERCK--PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
           FQ  + M R    PN   YN L+        VD+   +F E+ E  +A  + TYN ++  
Sbjct: 248 FQMYENMNRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGG 307

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             +     E   ++ ++      P+I+T+N+LI+ +      D   ++F  L  S   PT
Sbjct: 308 LCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPT 367

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           L T+N++I  Y K      A  + ++M       S +TY  +I  +   +   +A E+  
Sbjct: 368 LVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAFARLNYTDKACEMHS 427

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
            + K G    V T + ++   C+NG   EA   F++   M + P+S  Y  +   Y K  
Sbjct: 428 LMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKEG 487

Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEAL 338
                 +LL  M  +G+VPN   F   +
Sbjct: 488 SSYRALRLLNEMVHSGMVPNVASFCSTM 515



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 134/302 (44%), Gaps = 25/302 (8%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI+     G    A  +F+EMR  G       YN LI        + K   +A+   
Sbjct: 266 YNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGG----LCRGKKFGEAVKLV 321

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY-- 131
            K+  +    PNIVTYNIL+        +D    LF +L  S L+P + TYN ++  Y  
Sbjct: 322 HKVNKVGL-SPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSK 380

Query: 132 -----GKNGMIKEMES-VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
                G   ++KEME   ++R K        +T+ +LID++ +    DK  ++   +  S
Sbjct: 381 VENLAGALDLVKEMEERCIARSK--------VTYTILIDAFARLNYTDKACEMHSLMEKS 432

Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS-- 243
              P + T++ +I          +A   F+ +  M   P+ + Y  +I  +GYC   S  
Sbjct: 433 GLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMI--HGYCKEGSSY 490

Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
           RA  + +E+   G    V++  + +   C +    EA+LL     N G+ P  S YK+++
Sbjct: 491 RALRLLNEMVHSGMVPNVASFCSTMGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMVH 550

Query: 304 KA 305
           K 
Sbjct: 551 KV 552



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 115/250 (46%), Gaps = 6/250 (2%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           PN+V Y  L+  C +  +V     LF ++    L P+ +TY+ +M+ + K G+ +E   +
Sbjct: 191 PNVVIYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQM 250

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
              M  +   P+   +N LI  Y      DK  +VF  +        + T+N +I    +
Sbjct: 251 YENMNRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCR 310

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKV 261
            +  G+A  +  K+  +  +P+ +TY  +I   G+CD   +  A  +F++L   G    +
Sbjct: 311 GKKFGEAVKLVHKVNKVGLSPNIVTYNILIN--GFCDVGKMDTAVRLFNQLKSSGLSPTL 368

Query: 262 STLNAMLEAYC-MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
            T N ++  Y  +  L    DL+ E      +     TY +L  A+ + N  +   ++  
Sbjct: 369 VTYNTLIAGYSKVENLAGALDLVKEMEERC-IARSKVTYTILIDAFARLNYTDKACEMHS 427

Query: 321 RMEQNGIVPN 330
            ME++G+VP+
Sbjct: 428 LMEKSGLVPD 437



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 143/334 (42%), Gaps = 10/334 (2%)

Query: 11  TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
           T +Y  ++        T  A+     M + G  P  + +N L+   +    ++    KA 
Sbjct: 89  TPLYDAIVNAYVHSHSTDQALTFLHHMIHEGHAPLSNTFNNLLCLLI----RSNYFDKAW 144

Query: 71  GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
             F  +K   +   N  ++ I++  C +A    +V  L   L E  L+P++  Y  ++D 
Sbjct: 145 WIFNVLK--SKVVLNAYSFGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDG 202

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             KNG +   +++  +M      P+  T+++L++ + K+    +  Q+++++  S   P 
Sbjct: 203 CCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPN 262

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREI 248
              +N +I  Y    +  KA  VF +M         +TY  +I   G C       A ++
Sbjct: 263 AYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIG--GLCRGKKFGEAVKL 320

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
             +++K+G    + T N ++  +C  G    A  LF    + G++P   TY  L   Y+K
Sbjct: 321 VHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSK 380

Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
                    L+K ME+  I  +K  +   ++ F+
Sbjct: 381 VENLAGALDLVKEMEERCIARSKVTYTILIDAFA 414



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/222 (19%), Positives = 91/222 (40%), Gaps = 21/222 (9%)

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQ----------------CKPDIITFNLLIDSYGKRQ 170
           +++    +GM+ + +S++ R+ S +                C      ++ ++++Y    
Sbjct: 44  ILNHLLSSGMLPQAQSLILRLISGRIPSSLMLQLTQAHFTSCSTYTPLYDAIVNAYVHSH 103

Query: 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
           + D+       ++H    P   TFN+++    ++    KA ++F     +K       Y 
Sbjct: 104 STDQALTFLHHMIHEGHAPLSNTFNNLLCLLIRSNYFDKAWWIFN---VLKSKVVLNAYS 160

Query: 231 CIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
             I + G C+     R   +   L + G    V     +++  C NG    A  LF    
Sbjct: 161 FGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGCCKNGDVMLAKNLFCKMD 220

Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
            +G+ P+  TY +L   + K  ++    ++ + M ++GIVPN
Sbjct: 221 RLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPN 262


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 142/316 (44%), Gaps = 6/316 (1%)

Query: 15  SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
           + L+A + +  +   A  +   MR+   RP  S Y  LI A    R   +AL + L   Q
Sbjct: 145 AALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERAL-ELLRQMQ 203

Query: 75  KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
            + G E   P    +  L+RA A+   ++   AL  E+  S L PDI  YN  +D +GK 
Sbjct: 204 DV-GYEVSVP---LFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKA 259

Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
           G +         +K++  +PD +++  ++    K     + E++F  +   ++ P    +
Sbjct: 260 GSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAY 319

Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
           N+MI+ YG A     A  + +++      PS +++  I+T  G    V  A  +FD + K
Sbjct: 320 NTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKK 379

Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
             K   +ST N +++  CM G   EA  + +     G+ P+  +  ++     KAN  E 
Sbjct: 380 DAKP-NISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEE 438

Query: 315 VQKLLKRMEQNGIVPN 330
             ++ +   + G  PN
Sbjct: 439 AHRIFESASERGCNPN 454



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 139/309 (44%), Gaps = 9/309 (2%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           ++ D   YS LI  + K GQ R    +F  M   G   D   YNA++        K+  +
Sbjct: 556 FLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLC----KSGKV 611

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
            KA    ++MK ++   P + TY  ++   A+   +D+   LF+E     +  ++  Y+ 
Sbjct: 612 DKAYEVLEEMK-VKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSS 670

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++D +GK G I E   +L  M      P++ T+N L+D+  K +  D+    F+S+   K
Sbjct: 671 LIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMK 730

Query: 187 EKPTLPTFNSMIINYGKARLQ--GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
             P   T+ S++IN G  R+Q   KA   +Q+M      P+ +TY  +I+      N++ 
Sbjct: 731 CSPNTYTY-SILIN-GLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITD 788

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A  +F+     G     ++ NA++E       P EA  +FE +   G   +  T   L  
Sbjct: 789 AYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRGCRLNVKTCISLLD 848

Query: 305 AYTKANMKE 313
           A  K    E
Sbjct: 849 ALNKTECLE 857



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 145/359 (40%), Gaps = 39/359 (10%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+  I   GK G   +A   F E++  G RPD   Y +++        KA  L +A
Sbjct: 245 DIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLC----KAGRLGEA 300

Query: 70  LGYFQKMKG-----------------------------MER-----CKPNIVTYNILLRA 95
              F +M+                              +ER     C P++V++N +L  
Sbjct: 301 EELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTC 360

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
             + R VD+   LF  + +    P+I TYN ++D     G + E   +   M+     P+
Sbjct: 361 LGKKRKVDEALTLFDVMKKDA-KPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPN 419

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
           +++ N+++D   K    ++  ++F+S       P   T+ S+I   GK      A  +F+
Sbjct: 420 LLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFE 479

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
           KM    +  + I Y  +I  +          +I+ E+ + G    ++ LN  ++     G
Sbjct: 480 KMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAG 539

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
              +   +FE+  + G  PD  +Y +L    TKA        + + M Q G   + R +
Sbjct: 540 EVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAY 598



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 143/320 (44%), Gaps = 11/320 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI-TAHLHTRDKAKALAKALGY 72
           Y  LI  +GKKG+   A  LF +M ++G   +P +Y +LI    +H R       K  G+
Sbjct: 458 YCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGR-------KEDGH 510

Query: 73  FQKMKGMER--CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
            +  K M R   +P++   N  +    +A  V++  A+F+++      PD+ +Y+ ++  
Sbjct: 511 -KIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHG 569

Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
             K G  +E  ++   M       D   +N ++D   K    DK  +V + +      PT
Sbjct: 570 LTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPT 629

Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250
           + T+ S++    K     +A  +F++  +     + I Y  +I  +G    +  A  I +
Sbjct: 630 VATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILE 689

Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
           E+ K G    V T N++++A        EA + F++   M  +P++ TY +L     +  
Sbjct: 690 EMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQ 749

Query: 311 MKELVQKLLKRMEQNGIVPN 330
                    + M++ G++PN
Sbjct: 750 KYNKAFVFWQEMQKQGLIPN 769



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 141/324 (43%), Gaps = 6/324 (1%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
           Y     +++ L+  + ++GQ   A+ L  E++ S   PD  +YN  I        KA ++
Sbjct: 207 YEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCF----GKAGSV 262

Query: 67  AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
             A  +F ++K     +P+ V+Y  ++    +A  + +   LF ++      P  Y YN 
Sbjct: 263 DMAWKFFHELKA-HGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNT 321

Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
           ++  YG      +   +L R++   C P +++FN ++   GK++  D+   +F  +M   
Sbjct: 322 MIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLF-DVMKKD 380

Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
            KP + T+N +I     A    +A  +  +M      P+ ++   ++      + +  A 
Sbjct: 381 AKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAH 440

Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
            IF+  S+ G +    T  ++++     G   +A  LFE   + G   +   Y  L + +
Sbjct: 441 RIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNF 500

Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
                KE   K+ K M + G  P+
Sbjct: 501 FMHGRKEDGHKIYKEMIRRGGRPD 524



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/363 (21%), Positives = 142/363 (39%), Gaps = 41/363 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ +I   G   +   A  L   +R  GC P    +N+++T       K + + +AL  F
Sbjct: 319 YNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTC----LGKKRKVDEALTLF 374

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
             MK  +  KPNI TYNI++     A  V++   +  E+  + L P++ + N ++D   K
Sbjct: 375 DVMK--KDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCK 432

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-------QAFDKM----------- 175
              ++E   +        C P+ +T+  LID  GK+       + F+KM           
Sbjct: 433 ANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPII 492

Query: 176 -----------------EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
                             +++K ++    +P L   N+ +    KA    K   +F+ M 
Sbjct: 493 YTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMK 552

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           +  + P   +Y  +I              IF  +S+ G  +     NA+++  C +G   
Sbjct: 553 SFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVD 612

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
           +A  + E      V P  +TY  +     K +  +    L +  +  GI  N   +   +
Sbjct: 613 KAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLI 672

Query: 339 ETF 341
           + F
Sbjct: 673 DGF 675



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 81/395 (20%), Positives = 149/395 (37%), Gaps = 70/395 (17%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI--------- 53
           ++R  I     ++ ++  +GKK +   A+ LF  M+    +P+ S YN +I         
Sbjct: 343 RERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDA-KPNISTYNIIIDMLCMAGRV 401

Query: 54  TAHLHTRD----------------------KAKALAKALGYFQKMKGMER-CKPNIVTYN 90
                 RD                      KA  L +A   F+     ER C PN VTY 
Sbjct: 402 NEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESAS--ERGCNPNSVTYC 459

Query: 91  ILLRACAQARNVDQVNALFKE-----------LHESIL---------------------- 117
            L+    +   +D    LF++           ++ S++                      
Sbjct: 460 SLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRR 519

Query: 118 --APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 175
              PD+   N  MD   K G +++  ++   MKS    PD+ ++++LI    K     + 
Sbjct: 520 GGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARET 579

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
             +F+++           +N+++    K+    KA  V ++M      P+  TY  I+  
Sbjct: 580 SNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDG 639

Query: 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
               D +  A  +F+E    G ++ V   +++++ +   G   EA L+ E     G+TP+
Sbjct: 640 LAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPN 699

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
             T+  L  A  K    +      + M++    PN
Sbjct: 700 VYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPN 734


>gi|422293946|gb|EKU21246.1| hypothetical protein NGA_2092600 [Nannochloropsis gaditana CCMP526]
          Length = 659

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 153/346 (44%), Gaps = 8/346 (2%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++  +  +GK GQ  LA+ LF+E+ + G  P+   YN  I    H   +A  + +A    
Sbjct: 264 FNTAMDALGKAGQYDLALELFTEIEDHGFAPNLVSYNTAI----HACGRAGMVDRAHELL 319

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI-LAPDIYTYNGVMDAYG 132
           ++M+G+   +P+ V+YN ++ A A+         L  E+ E+  + PD+ +YN  M    
Sbjct: 320 REMQGLS-VRPDSVSYNTVMAAFAKKNQWKAALELLAEMKEAPGVDPDLISYNTAMHVCA 378

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G  +    +L+       +PD++++N ++ + G+   + +   +F  +      P   
Sbjct: 379 KAGRWERATELLTEALGQGLQPDVVSYNTVMHACGRAGEYLQALDLFGMMEEVGVAPDRV 438

Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
           +FN+ +    +A     A  + ++M A    P+  +Y   +   G      RA E+ +E+
Sbjct: 439 SFNTAMHACNRALKWQAALQILREMEARSIAPNVKSYTIAVDACGRAGEWERALELMEEM 498

Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
              G    V T  A ++A C  G      +L E     GV P+  +Y +   A  +    
Sbjct: 499 EVRGVPANVHTYTAAMDACCRGGAVDRVLVLLEEMDGKGVEPNVVSYTIAMDAMNRVGKW 558

Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLT 358
           +    +L++M Q G+  +   +  AL T  +  AG + G   T + 
Sbjct: 559 DRASAVLEQMVQRGLRLDSVSYRTALST--AGRAGDEEGERLTKIV 602



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 118/258 (45%), Gaps = 3/258 (1%)

Query: 85  NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144
           ++V + + ++AC QAR   +   + +E+    L PD+ ++N  MDA GK G       + 
Sbjct: 225 DVVGFTMAIKACGQARRWREALGVLREMQARGLRPDLVSFNTAMDALGKAGQYDLALELF 284

Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
           + ++ +   P+++++N  I + G+    D+  ++ + +     +P   ++N+++  + K 
Sbjct: 285 TEIEDHGFAPNLVSYNTAIHACGRAGMVDRAHELLREMQGLSVRPDSVSYNTVMAAFAK- 343

Query: 205 RLQGKA--EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           + Q KA  E + +   A    P  I+Y   + +        RA E+  E    G    V 
Sbjct: 344 KNQWKAALELLAEMKEAPGVDPDLISYNTAMHVCAKAGRWERATELLTEALGQGLQPDVV 403

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           + N ++ A    G   +A  LF     +GV PD  ++     A  +A   +   ++L+ M
Sbjct: 404 SYNTVMHACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQILREM 463

Query: 323 EQNGIVPNKRFFLEALET 340
           E   I PN + +  A++ 
Sbjct: 464 EARSIAPNVKSYTIAVDA 481



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 116/271 (42%), Gaps = 9/271 (3%)

Query: 76  MKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG 135
           +  ++R   N V YN +       R  D   AL   L   ++  D+  +   + A G+  
Sbjct: 189 LHAIDRALVNFVLYNCM-------RRRDWTRAL-TVLDAPLIEVDVVGFTMAIKACGQAR 240

Query: 136 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195
             +E   VL  M++   +PD+++FN  +D+ GK   +D   ++F  +      P L ++N
Sbjct: 241 RWREALGVLREMQARGLRPDLVSFNTAMDALGKAGQYDLALELFTEIEDHGFAPNLVSYN 300

Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
           + I   G+A +  +A  + ++M  +   P  ++Y  ++  +   +    A E+  E+ + 
Sbjct: 301 TAIHACGRAGMVDRAHELLREMQGLSVRPDSVSYNTVMAAFAKKNQWKAALELLAEMKEA 360

Query: 256 -GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
            G D  + + N  +      G    A  L   +   G+ PD  +Y  +  A  +A     
Sbjct: 361 PGVDPDLISYNTAMHVCAKAGRWERATELLTEALGQGLQPDVVSYNTVMHACGRAGEYLQ 420

Query: 315 VQKLLKRMEQNGIVPNKRFFLEALETFSSSL 345
              L   ME+ G+ P++  F  A+   + +L
Sbjct: 421 ALDLFGMMEEVGVAPDRVSFNTAMHACNRAL 451


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 149/352 (42%), Gaps = 40/352 (11%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI     +G+  +A  L +EM + G  P+   +NALI  H+   +  +AL   + Y 
Sbjct: 301 YNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALK--MFYM 358

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
            + KG+    P+ V+Y +LL    +    D     +  +  + +     TY G++D   K
Sbjct: 359 MEAKGL---TPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCK 415

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP---- 189
           NG + E   +L+ M  +   PDI+T++ LI+ + K   F   +++   +      P    
Sbjct: 416 NGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGII 475

Query: 190 --TLP-----------------------------TFNSMIINYGKARLQGKAEYVFQKMT 218
             TL                              TFN ++ +  KA    +AE   + MT
Sbjct: 476 YSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMT 535

Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
           +    P+ ++++C+I  YG      +A  +FDE++K+G      T  ++L+  C  G   
Sbjct: 536 SDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLR 595

Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
           EA+   ++ H +    D+  Y  L  A  K+        L   M Q  I+P+
Sbjct: 596 EAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPD 647



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 146/346 (42%), Gaps = 5/346 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ ++    KKG+ + A+ L   M++ G   D   YN LI    H   ++  +AK     
Sbjct: 231 YNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLI----HDLCRSNRIAKGYLLL 286

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           + M+      PN VTYN L+   +    V   + L  E+    L+P+  T+N ++D +  
Sbjct: 287 RDMRK-RMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHIS 345

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G  KE   +   M++    P  +++ +L+D   K   FD     +  +  +       T
Sbjct: 346 EGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRIT 405

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +  MI    K     +A  +  +M+     P  +TY  +I  +        A+EI   + 
Sbjct: 406 YTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIY 465

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
           ++G        + ++   C  G   EA  ++E     G T D  T+ +L  +  KA    
Sbjct: 466 RVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVA 525

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTR 359
             ++ ++ M  +GI+PN   F   +  + +S  G ++ S   ++T+
Sbjct: 526 EAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTK 571



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 131/290 (45%), Gaps = 5/290 (1%)

Query: 42  CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN 101
           C  +PSVY+ LI  +L    +   +  +L  F+ M G+    P++ T N +L +  ++  
Sbjct: 119 CNSNPSVYDILIRVYL----REGMIQDSLEIFRLM-GLYGFNPSVYTCNAILGSVVKSGE 173

Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
              V +  KE+ +  + PD+ T+N +++     G  ++   ++ +M+ +   P I+T+N 
Sbjct: 174 DVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNT 233

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           ++  Y K+  F    ++   +        + T+N +I +  ++    K   + + M    
Sbjct: 234 VLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRM 293

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
             P+ +TY  +I  +     V  A ++ +E+   G      T NA+++ +   G   EA 
Sbjct: 294 IHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEAL 353

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
            +F      G+TP   +Y +L     K    +L +    RM++NG+   +
Sbjct: 354 KMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGR 403



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 134/299 (44%), Gaps = 20/299 (6%)

Query: 9   ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
            DT +Y+ L+  M K G    A+ LF EM      PD   Y +LI+       K K +  
Sbjct: 611 VDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCR---KGKTVIA 667

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI-LAPDIYTYNGV 127
            L + ++ +      PN V Y   +    +A    +    F+E  +++   PDI T N +
Sbjct: 668 IL-FAKEAEARGNVLPNKVMYTCFVDGMFKAGQW-KAGIYFREQMDNLGHTPDIVTTNAM 725

Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
           +D Y + G I++   +L  M +    P++ T+N+L+  Y KR+       +++S++ +  
Sbjct: 726 IDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGI 785

Query: 188 KPTLPTFNSMII-----NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN- 241
            P   T +S+++     N  +  L+    ++ + +   +YT + +  +C       C N 
Sbjct: 786 LPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKC-------CANG 838

Query: 242 -VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
            ++ A ++   ++ LG  +   T +AM+     N    E+ ++       G++P+S  Y
Sbjct: 839 EINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKY 897



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 131/332 (39%), Gaps = 18/332 (5%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   ++ L+  + K G+   A      M + G  P+   ++ LI  + ++ +  KA +  
Sbjct: 507 DHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFS-- 564

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F +M  +    P   TY  LL+   +  ++ +     K LH    A D   YN ++ 
Sbjct: 565 --VFDEMTKVGH-HPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLT 621

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK- 188
           A  K+G + +  S+   M      PD  T+  LI    ++       +   +++ +KE  
Sbjct: 622 AMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKG------KTVIAILFAKEAE 675

Query: 189 ------PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
                 P    +   +    KA       Y  ++M  + +TP  +T   +I  Y     +
Sbjct: 676 ARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKI 735

Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
            +  ++  E+        ++T N +L  Y      + + LL+ +    G+ PD  T   L
Sbjct: 736 EKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSL 795

Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
                ++NM E+  K+LK     G+  ++  F
Sbjct: 796 VLGICESNMLEIGLKILKAFICRGVEVDRYTF 827



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 108/320 (33%), Gaps = 83/320 (25%)

Query: 37  MRNSGCRPDPSVYNALITAHLHTR----DKAKALAKALGYFQK---------MKGMERCK 83
           ++  G   D  V    IT H+  R    D A+ + K L              M     C 
Sbjct: 61  VKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRLCN 120

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
            N   Y+IL+R   +   +     +F+ +      P +YT N ++ +  K+G    + S 
Sbjct: 121 SNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSF 180

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
           L  M   +  PD+ TFN+LI+      +F+                              
Sbjct: 181 LKEMLKRKICPDVATFNILINVLCAEGSFE------------------------------ 210

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
                K+ Y+ QKM    Y P+ +TY                                  
Sbjct: 211 -----KSSYLMQKMEKSGYAPTIVTY---------------------------------- 231

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
            N +L  YC  G    A  L ++  + GV  D  TY +L     ++N       LL+ M 
Sbjct: 232 -NTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMR 290

Query: 324 QNGIVPNKRFFLEALETFSS 343
           +  I PN+  +   +  FS+
Sbjct: 291 KRMIHPNEVTYNTLINGFSN 310



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 141/354 (39%), Gaps = 42/354 (11%)

Query: 13   IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
            +Y+  +  M K GQ +  ++   +M N G  PD    NA+I  +     +   + K    
Sbjct: 686  MYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGY----SRMGKIEKTNDL 741

Query: 73   FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
              +M G +   PN+ TYNILL   ++ ++V     L++ +  + + PD  T + ++    
Sbjct: 742  LPEM-GNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGIC 800

Query: 133  KNGMIKEMESVLSRMKSNQCKPDIITFNLLID---SYGK-RQAFDKMEQVFKSLMHSKEK 188
            ++ M++    +L        + D  TFN+LI    + G+   AFD + +V  SL  S +K
Sbjct: 801  ESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFD-LVKVMTSLGISLDK 859

Query: 189  PTLPTFNSMI---INYGKARL-------QG----------------------KAEYVFQK 216
             T     S++     + ++R+       QG                       A  V ++
Sbjct: 860  DTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEE 919

Query: 217  MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
            M A K  P  +    ++     C     A  +   + K+     +++   ++   C NG 
Sbjct: 920  MIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGN 979

Query: 277  PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              EA  L     N G+  D  +Y +L           L  +L + M+ +G + N
Sbjct: 980  VIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLAN 1033



 Score = 44.3 bits (103), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 43/218 (19%), Positives = 87/218 (39%)

Query: 88   TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
            T+N+L+  C     ++    L K +    ++ D  T + ++    +N   +E   VL  M
Sbjct: 826  TFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEM 885

Query: 148  KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
                  P+   +  LI+   +         V + ++  K  P     ++M+    K    
Sbjct: 886  SKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKA 945

Query: 208  GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
             +A  + + M  MK  P+  ++  ++ +     NV  A E+   +S  G  + + + N +
Sbjct: 946  DEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVL 1005

Query: 268  LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
            +   C  G    A  L+E     G   +++TYK L + 
Sbjct: 1006 ITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRG 1043


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 152/324 (46%), Gaps = 13/324 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
           +R +  +    + LI  +  +G+ + A++   ++   G + D   Y  LI     T +  
Sbjct: 120 KRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGE-T 178

Query: 64  KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
           KA+A+ L   +K++G    KP++V YN ++ +  + + +     ++ E+    ++PD+ T
Sbjct: 179 KAVARLL---RKLEG-HSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVT 234

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
           Y  ++  +   G +KE  S+L+ MK     P++ TFN+LID+  K     + + +   +M
Sbjct: 235 YTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMM 294

Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN-- 241
            +  KP + T+NS+I  Y        A+YVF  M     TP    Y  +I   G C    
Sbjct: 295 KACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMIN--GLCKTKM 352

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           V  A  +F+E+        + T N++++  C N     A  L +     G+ PD  +Y +
Sbjct: 353 VDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTI 412

Query: 302 LYKAYTKA----NMKELVQKLLKR 321
           L     K+    + KE+ Q+LL +
Sbjct: 413 LLDGLCKSGRLEDAKEIFQRLLAK 436



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 146/325 (44%), Gaps = 13/325 (4%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y  LI  + K G+T+    L  ++     +PD  +YN +I    ++  K K L  A   +
Sbjct: 165 YGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTII----NSLCKNKLLGDACDVY 220

Query: 74  QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +M  KG+    P++VTY  L+       ++ +  +L  E+    + P++ T+N ++DA 
Sbjct: 221 SEMIVKGIS---PDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDAL 277

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K G +KE + +L+ M     KPD+ T+N LID Y         + VF S+      P +
Sbjct: 278 SKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDV 337

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIF 249
             + +MI    K ++  +A  +F++M      P  +TY  +I   G C N  + RA  + 
Sbjct: 338 QCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLID--GLCKNHHLERAIALC 395

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
             + + G    V +   +L+  C +G   +A  +F+     G   +   Y +L     KA
Sbjct: 396 KRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKA 455

Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
              +    L  +ME  G +P+   F
Sbjct: 456 GFFDEALDLKSKMEDKGCMPDAVTF 480



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 143/321 (44%), Gaps = 9/321 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D  +Y+ +I  + K      A  ++SEM   G  PD   Y  LI    H       L +A
Sbjct: 196 DVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLI----HGFCIMGHLKEA 251

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
                +MK ++   PN+ T+NIL+ A ++   + +   L   + ++ + PD++TYN ++D
Sbjct: 252 FSLLNEMK-LKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLID 310

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            Y     +K  + V   M      PD+  +  +I+   K +  D+   +F+ + H    P
Sbjct: 311 GYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIP 370

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRARE 247
            + T+NS+I    K     +A  + ++M      P   +Y   I + G C +  +  A+E
Sbjct: 371 DIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYT--ILLDGLCKSGRLEDAKE 428

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
           IF  L   G  + V     ++   C  G   EA  L     + G  PD+ T+ ++ +A  
Sbjct: 429 IFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALF 488

Query: 308 KANMKELVQKLLKRMEQNGIV 328
           + +  +  +K+L+ M   G++
Sbjct: 489 EKDENDKAEKILREMIARGLL 509



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 89/182 (48%), Gaps = 9/182 (4%)

Query: 4   QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL--HTRD 61
           QR    D   Y+ +I  + K      AM LF EM++    PD   YN+LI      H  +
Sbjct: 330 QRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLE 389

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           +A AL K +    K +G++   P++ +Y ILL    ++  ++    +F+ L       ++
Sbjct: 390 RAIALCKRM----KEQGIQ---PDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNV 442

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           + Y  +++   K G   E   + S+M+   C PD +TF+++I +  ++   DK E++ + 
Sbjct: 443 HAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILRE 502

Query: 182 LM 183
           ++
Sbjct: 503 MI 504



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 108/249 (43%), Gaps = 4/249 (1%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
           P++ T +IL+       ++    ++F  + +    P+  T N ++      G IK+    
Sbjct: 90  PDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYF 149

Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
             ++ +   + D +++  LI+   K      + ++ + L     KP +  +N++I +  K
Sbjct: 150 HDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCK 209

Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKV 261
            +L G A  V+ +M     +P  +TY  +I  +G+C   ++  A  + +E+     +  V
Sbjct: 210 NKLLGDACDVYSEMIVKGISPDVVTYTTLI--HGFCIMGHLKEAFSLLNEMKLKNINPNV 267

Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
            T N +++A    G   EA +L        + PD  TY  L   Y   +  +  + +   
Sbjct: 268 CTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYS 327

Query: 322 MEQNGIVPN 330
           M Q G+ P+
Sbjct: 328 MAQRGVTPD 336


>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 507

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 158/338 (46%), Gaps = 14/338 (4%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR- 60
           +KQ+ +  +T I+  LI  +GK  Q ++   L  EM+         + N    + +  R 
Sbjct: 111 EKQQGFNHNTEIFHALIEALGKIRQFKMIWNLVDEMKQR------KLLNGDTFSLIARRY 164

Query: 61  DKAKALAKALGYFQKMK--GMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESIL 117
            +AK + +AL  F++M+  G+   KP I  +N L+   C    +V++   LF ++ +  L
Sbjct: 165 VRAKVIKEALKTFERMEKYGL---KPQISDFNKLIDVLCKSKFHVEKAQELFDKMRQWNL 221

Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
            P++ +Y  +++ + +   + +++ V   MK +  +PD++T+ ++I++Y K + +D+   
Sbjct: 222 EPNLKSYTILIEGWSQQQNLLKVDEVCREMKDDGFQPDVVTYGIIINAYCKAKKYDEAIG 281

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           ++  ++     P+   + + I   G      +A   F+K  A  + P   TY  +++ Y 
Sbjct: 282 IYHDMLSKNVNPSPHIYCTFITGLGNGSRMDEAFEFFEKSKASGFPPEAPTYNAVVSAYC 341

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN-SHNMGVTPDS 296
           +   +  A  I  E+ +LG      T + +L      G   EA  +F+  S   G  P  
Sbjct: 342 WSMRIDDAYRIVGEMKELGIGPNARTYDIILVHLIKGGRTKEAYSVFQRMSSETGCEPSV 401

Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           STY ++ + +   N  ++   +   M+  GI+P    F
Sbjct: 402 STYAIMVRMFCNENQLDMAMVVWNEMKDKGILPGIHMF 439



 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           +  EM+  G  P+   Y+ +I  HL    + K   +A   FQ+M     C+P++ TY I+
Sbjct: 352 IVGEMKELGIGPNARTYD-IILVHLIKGGRTK---EAYSVFQRMSSETGCEPSVSTYAIM 407

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           +R       +D    ++ E+ +  + P I+ ++ ++
Sbjct: 408 VRMFCNENQLDMAMVVWNEMKDKGILPGIHMFSTLI 443


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 152/356 (42%), Gaps = 22/356 (6%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ L+    K G    A   F EM+  GC P+   Y ALI A+L TR     L++A
Sbjct: 156 DVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTR----KLSRA 211

Query: 70  LGYFQKMKGMERCKPNIVTYNILL----------RAC---AQARN----VDQVNALFKEL 112
              F+ M     C PNIVTY  L+          +AC   A+ +N    +  V+  F+ +
Sbjct: 212 NEIFEMMLS-NGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIV 270

Query: 113 HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 172
              +  P++ TY  ++D   K   +KE   +L  M    C+P+ I ++ LID + K    
Sbjct: 271 DSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKL 330

Query: 173 DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 232
           D+ ++VF  ++     P + T++S+I    K +    A  V  KM      P+ + Y  +
Sbjct: 331 DEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEM 390

Query: 233 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV 292
           +           A  +   + + G    V T  AM++ +   G       L +   + G 
Sbjct: 391 VDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGC 450

Query: 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 348
            P+  TY++L      A + +   KLL+ M+Q     +   + + +E FS     S
Sbjct: 451 APNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHEFVAS 506



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 149/343 (43%), Gaps = 22/343 (6%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           + +I D+  YSK+I  +    +   A  LF EM+ +G  PD   Y  L+        K  
Sbjct: 116 KGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFC----KVG 171

Query: 65  ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
            + +A  +F +M+  + C PN+VTY  L+ A  + R + + N +F+ +  +   P+I TY
Sbjct: 172 LIEQARNWFDEMQ-QDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTY 230

Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQC-----------------KPDIITFNLLIDSYG 167
             ++D + K G  ++   + +RMK+++                  +P+++T+  L+D   
Sbjct: 231 TALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLC 290

Query: 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227
           K     +   + +++     +P    ++++I  + K     +A+ VF KM     +P+  
Sbjct: 291 KAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVY 350

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           TY  +I        +  A ++  ++ +      V     M++  C  G   EA  L    
Sbjct: 351 TYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMM 410

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
              G  P+  TY  +   + KA   +   +LL+ M   G  PN
Sbjct: 411 EEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPN 453



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 160/380 (42%), Gaps = 53/380 (13%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD----KAKALAK 68
           I++ L+    + G    A  L  +M   G +P   VYN LI     T D    +   LA+
Sbjct: 13  IFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPSMEVIGLAE 72

Query: 69  --------------------------ALGYFQKMKGMER------CKPNIVTYNILLRAC 96
                                      +G F+K   + R        P+  TY+ ++   
Sbjct: 73  RAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYL 132

Query: 97  AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
             A  V++   LF+E+  + + PD+YTY  ++D + K G+I++  +    M+ + C P++
Sbjct: 133 CNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNV 192

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           +T+  LI +Y K +   +  ++F+ ++ +   P + T+ ++I  + KA    KA  ++ +
Sbjct: 193 VTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYAR 252

Query: 217 MTAMKYT-----------------PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
           M   K                   P+ +TY  ++        V  AR++ + +S  G + 
Sbjct: 253 MKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEP 312

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
                +A+++ +C  G   EA  +F      G +P+  TY  L     K    +L  K+L
Sbjct: 313 NQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVL 372

Query: 320 KRMEQNGIVPNKRFFLEALE 339
            +M +N   PN   + E ++
Sbjct: 373 TKMLENSCAPNVVIYTEMVD 392



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 166/367 (45%), Gaps = 33/367 (8%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCR-PDPSVYNALITAHLHTRDKAK--ALAKAL 70
           Y+ LI    K G+T  A  +++ M+N     PD  +Y  ++ + L   +     AL   L
Sbjct: 230 YTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGL 289

Query: 71  GYFQKMK---------GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
               K+K          +E C+PN + Y+ L+    +   +D+   +F ++     +P++
Sbjct: 290 CKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNV 349

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           YTY+ ++D   K+  +     VL++M  N C P+++ +  ++D   K     K ++ ++ 
Sbjct: 350 YTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCK---VGKTDEAYRL 406

Query: 182 LMHSKEK---PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238
           ++  +EK   P + T+ +MI  +GKA    +   + Q MT+    P+FITY  +I     
Sbjct: 407 MLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLI----- 461

Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY--CMNGLPTE----ADLLFENSHNMGV 292
             N   A  + D+  KL ++MK +     +  Y   + G   E      LL E S + G 
Sbjct: 462 --NHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHEFVASLGLLAELSED-GS 518

Query: 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGS 352
            P    YKLL   + KA   E+  +L + +        +  ++  +E+ + +    ++  
Sbjct: 519 VPILPVYKLLIDNFIKAGRLEMALELHEELSSFS-AAYQNTYVSLIESLTLACKVDKAFK 577

Query: 353 AKTDLTR 359
             +D+TR
Sbjct: 578 LYSDMTR 584



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 129/307 (42%), Gaps = 39/307 (12%)

Query: 37  MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC--KPNIVTYNILLR 94
           M   GC P P ++N+L+ A+  + D   A       ++ +K M  C  +P  V YNIL+ 
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSGDYFYA-------YKLLKKMVICGYQPGYVVYNILIG 54

Query: 95  ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
                 ++  +  +        LA   Y           N M+ EM  VL+++       
Sbjct: 55  GICSTEDLPSMEVIG-------LAERAY-----------NEML-EMGVVLNKV------- 88

Query: 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214
           ++  F   +   GK   F+K   V + +M     P   T++ +I     A    KA  +F
Sbjct: 89  NVCNFTRCLCCIGK---FEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLF 145

Query: 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           Q+M     TP   TY  ++  +     + +AR  FDE+ + G    V T  A++ AY   
Sbjct: 146 QEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKT 205

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI-VPNKRF 333
              + A+ +FE   + G  P+  TY  L   + KA   E   ++  RM+ + + +P+   
Sbjct: 206 RKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDI 265

Query: 334 FLEALET 340
           +   +++
Sbjct: 266 YFRIVDS 272



 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 10/162 (6%)

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN------- 241
           P+   FNS++  Y ++     A  + +KM    Y P ++ Y  +I   G C         
Sbjct: 9   PSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIG--GICSTEDLPSME 66

Query: 242 -VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
            +  A   ++E+ ++G  +    +       C  G   +A  +     + G  PDSSTY 
Sbjct: 67  VIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYS 126

Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
            +      A+  E   +L + M++NGI P+   +   L+ F 
Sbjct: 127 KVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFC 168


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 139/304 (45%), Gaps = 10/304 (3%)

Query: 29  LAMWLF-SEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 87
           + +W F SE+   G  P    YN LI        K  ++  A   F +++     +P  V
Sbjct: 205 VTIWTFYSEILEYGFPPKVQYYNILINKFC----KEGSIRDAKLIFNEIRK-RGLRPTTV 259

Query: 88  TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
           ++N L+    ++RN+D+   L K + E+ + PD++TY+ ++    K G +   E +   M
Sbjct: 260 SFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEM 319

Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
           +    +P+ ITF  LID   + +  D     +  ++    KP L  +N+++    K    
Sbjct: 320 QQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDV 379

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLN 265
            KA  +  +M  +   P  ITY  +I   GYC   ++  A EI   +++ G  +      
Sbjct: 380 NKARKLVDEMRMVGMKPDKITYTTLID--GYCKEGDLESAMEIRKGMNEEGVVLDNVAFT 437

Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
           A++  +C +G   +A+         G+ PD +TY ++   Y K    ++  KLLK M+ N
Sbjct: 438 ALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQIN 497

Query: 326 GIVP 329
           G  P
Sbjct: 498 GHKP 501



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 151/375 (40%), Gaps = 51/375 (13%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ LI    K+G  R A  +F+E+R  G RP    +N LI     +R+  +        F
Sbjct: 226 YNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEG-------F 278

Query: 74  QKMKGME--RCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL-------------- 117
           +  K ME  R  P++ TY++L+    +   +D    LF E+ +  L              
Sbjct: 279 RLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQ 338

Query: 118 ---------------------APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156
                                 PD+  YN +++   K G + +   ++  M+    KPD 
Sbjct: 339 CRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDK 398

Query: 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
           IT+  LID Y K    +   ++ K +           F ++I  + +      AE   ++
Sbjct: 399 ITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLRE 458

Query: 217 MTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274
           M      P   TY  +I   GYC   NV    ++  E+   G    V T N ++   C  
Sbjct: 459 MVEAGMKPDDATYTMVID--GYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQ 516

Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           G    A++L E   N+GVTPD  TY +L + + K    E    LLK   + G++ +  ++
Sbjct: 517 GQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAE---DLLKLRNEKGLIVDYAYY 573

Query: 335 LEALETFSSSLAGSQ 349
              +  ++ SL   Q
Sbjct: 574 TSLVSEYNKSLKDRQ 588



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/322 (20%), Positives = 138/322 (42%), Gaps = 5/322 (1%)

Query: 20  VMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGM 79
           ++ +KG+   A    + +  +G R    V++AL+ A+      +  ++ A+  F+ ++  
Sbjct: 127 LVSRKGKDSAASVFAAILDTAGTRCSNFVFDALMIAYW----DSGFVSDAIQCFRLVRNS 182

Query: 80  ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
               P       LL     + +   +   + E+ E    P +  YN +++ + K G I++
Sbjct: 183 NFQIP-FHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRD 241

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
            + + + ++    +P  ++FN LI+   K +  D+  ++ K++  ++  P + T++ +I 
Sbjct: 242 AKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIH 301

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
              K      AE +F +M      P+ IT+  +I        +  A   + ++  +G   
Sbjct: 302 GLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKP 361

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
            +   N +L   C  G   +A  L +    +G+ PD  TY  L   Y K    E   ++ 
Sbjct: 362 DLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIR 421

Query: 320 KRMEQNGIVPNKRFFLEALETF 341
           K M + G+V +   F   +  F
Sbjct: 422 KGMNEEGVVLDNVAFTALISGF 443


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 138/321 (42%), Gaps = 5/321 (1%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ ++  + K  + + A+ L  ++  +GC P  + YNAL    L+   K   L +A
Sbjct: 164 DIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNAL----LNGLCKMGRLEEA 219

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           +   +K+     C P++VTY  L+    + +   +   LFKE+    L  D   Y  ++ 
Sbjct: 220 IDLLRKIVD-NGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIR 278

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              + G I +  SV   M S  C PD++T + +ID   K        ++FKS+      P
Sbjct: 279 GLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAP 338

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
               ++++I    KAR    A  +  +M     TP  ITY  +I       +V  AR  F
Sbjct: 339 NEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFF 398

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE+ + G    V T N ++  +C  G    A  +F++  +   +P+  TY  L     K 
Sbjct: 399 DEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKR 458

Query: 310 NMKELVQKLLKRMEQNGIVPN 330
                     + M++ G  P+
Sbjct: 459 RQLTKASLYFQHMKERGCPPD 479



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 145/320 (45%), Gaps = 10/320 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y+ LI  +GK+ ++  A  LF EM   G   D   Y ALI   L    +A  + +A
Sbjct: 234 DVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLL----QAGKIPQA 289

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              ++ M   + C P++VT + ++    +A  +     +FK +    LAP+   Y+ ++ 
Sbjct: 290 SSVYKTMTS-QGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIH 348

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
              K   +     +L++MK   C PD IT+N+LID   K    +     F  ++ +  KP
Sbjct: 349 GLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKP 408

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRARE 247
            + T+N ++  + KA     A  VF  M++   +P+ +TY  +I+  G C    +++A  
Sbjct: 409 DVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLIS--GLCKRRQLTKASL 466

Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
            F  + + G        +++++  C +G      +LF+     GV    +  +L++    
Sbjct: 467 YFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFH-LC 525

Query: 308 KANMKELVQKLLKRMEQNGI 327
           KAN  +    L   + + G+
Sbjct: 526 KANRVDEAVSLFNAIRKEGM 545



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 111/254 (43%), Gaps = 9/254 (3%)

Query: 5   RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
           R  + DT  Y+ LI  + + G+   A  ++  M + GC PD    + +I        KA 
Sbjct: 264 RGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLC----KAG 319

Query: 65  ALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            +  A+  F+ M  +G+    PN V Y+ L+    +AR +D    +  ++ ++   PD  
Sbjct: 320 RIGAAVRIFKSMEARGL---APNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTI 376

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TYN ++D   K+G ++   +    M    CKPD+ T+N+L+  + K    D    VF  +
Sbjct: 377 TYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDM 436

Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
             S   P + T+ ++I    K R   KA   FQ M      P    Y  ++        +
Sbjct: 437 SSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKL 496

Query: 243 SRAREIFDELSKLG 256
                +FDE+ + G
Sbjct: 497 EGGCMLFDEMERSG 510



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 132/314 (42%), Gaps = 5/314 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + K G+   A+ L  ++ ++GC PD   Y +LI        K K   +A   F
Sbjct: 203 YNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDG----LGKEKRSFEAYKLF 258

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M  +     + V Y  L+R   QA  + Q ++++K +      PD+ T + ++D   K
Sbjct: 259 KEM-ALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCK 317

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G I     +   M++    P+ + ++ LI    K +  D   ++   +  +   P   T
Sbjct: 318 AGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTIT 377

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +N +I    K+     A   F +M      P   TY  +++ +    N   A  +FD++S
Sbjct: 378 YNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMS 437

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
                  V T   ++   C     T+A L F++    G  PDS  Y  L     K+   E
Sbjct: 438 SSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLE 497

Query: 314 LVQKLLKRMEQNGI 327
               L   ME++G+
Sbjct: 498 GGCMLFDEMERSGV 511



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 144/362 (39%), Gaps = 45/362 (12%)

Query: 7   YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-GCRPDPSVYNALITAHLHTRDKAKA 65
           ++ D   ++ LI       +   A  +  EM    G  P    +N +    LH   K+  
Sbjct: 90  FLPDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLV----LHGLCKSGK 145

Query: 66  LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
           +  A+ +F+       C  +I TY  ++   A+ + +    AL +++  +   P I TYN
Sbjct: 146 VLAAMDHFETTT-TNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYN 204

Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-RQAFD----------- 173
            +++   K G ++E   +L ++  N C PD++T+  LID  GK +++F+           
Sbjct: 205 ALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALR 264

Query: 174 -----------------------KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
                                  +   V+K++      P + T ++MI    KA   G A
Sbjct: 265 GLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAA 324

Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAML 268
             +F+ M A    P+ + Y  +I  +G C    +  A E+  ++ K        T N ++
Sbjct: 325 VRIFKSMEARGLAPNEVVYSALI--HGLCKARKMDCALEMLAQMKKAFCTPDTITYNILI 382

Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
           +  C +G    A   F+     G  PD  TY +L   + KA   +    +   M  +   
Sbjct: 383 DGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCS 442

Query: 329 PN 330
           PN
Sbjct: 443 PN 444



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 109/252 (43%), Gaps = 1/252 (0%)

Query: 84  PNIVTYNILLRACAQARNVDQVNALFKELHESI-LAPDIYTYNGVMDAYGKNGMIKEMES 142
           P++ T+N+L+     AR  ++  A+ +E+ E   +AP + T+N V+    K+G +     
Sbjct: 92  PDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMD 151

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
                 +N C  DI T+  ++D   K +       + + +  +   PT+ T+N+++    
Sbjct: 152 HFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLC 211

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           K     +A  + +K+     TP  +TY  +I   G       A ++F E++  G  +   
Sbjct: 212 KMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTV 271

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
              A++      G   +A  +++   + G  PD  T   +     KA       ++ K M
Sbjct: 272 CYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSM 331

Query: 323 EQNGIVPNKRFF 334
           E  G+ PN+  +
Sbjct: 332 EARGLAPNEVVY 343



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+ +   DT  Y+ LI  + K G    A   F EM  +GC+PD   YN L++       K
Sbjct: 367 KKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFC----K 422

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
           A     A G F  M     C PN+VTY  L+    + R + + +  F+ + E    PD +
Sbjct: 423 AGNTDAACGVFDDMSS-SHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSF 481

Query: 123 TYNGVMDAYGKNGMIK 138
            Y+ ++D   K+G ++
Sbjct: 482 VYSSLVDGLCKSGKLE 497



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 13/228 (5%)

Query: 111 ELHESILAP------DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164
           EL + + +P       ++T N ++D + +    +E  ++L    +    PD+ T+N+LI 
Sbjct: 43  ELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLIT 102

Query: 165 SYGKRQAFDKMEQVFKSLMHSKEK----PTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220
            Y   +   + E+ F  +   +E     P+L T N ++    K+     A   F+  T  
Sbjct: 103 GYCLAR---EPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTN 159

Query: 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
             T    TY  I+        +  A  + ++++  G    ++T NA+L   C  G   EA
Sbjct: 160 GCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEA 219

Query: 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
             L     + G TPD  TY  L     K        KL K M   G+V
Sbjct: 220 IDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLV 267


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 157/344 (45%), Gaps = 27/344 (7%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDP------SVYNALIT 54
           + + R Y     + S+L+A+     +  LA  L   +  +     P      SV + L++
Sbjct: 75  LARDRLYAHSRRVLSRLVALR----RPHLAASLVDLLHRAALALGPRRSALASVVDTLLS 130

Query: 55  AHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN-ILLRACAQARNVDQVNALFKELH 113
             L  R       +A+   +++    R  PN  T N ILLR    AR  D+   L + L 
Sbjct: 131 V-LADRGLLDDAVRAVARVREL----RVPPNTRTCNHILLRL---AR--DRSGRLVRRLF 180

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
           E + AP+++T+N V+D   K G + E  S+ SRMK   C PD++TFN LID YGK    D
Sbjct: 181 EQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELD 240

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYE 230
           ++EQ+ + +  S  K  + T+N++I  + K    G+ E  +    AMK      + +T+ 
Sbjct: 241 EVEQLVEEMRRSGCKADVVTYNALINCFCKF---GRMETAYGYFAAMKREGVMANVVTFS 297

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
             +  +     V  A ++F ++   G  +   T   +++  C  G   +A +L +     
Sbjct: 298 TFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQ 357

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           GV  +  TY +L     K       + +L+ ME+ G+  N+  +
Sbjct: 358 GVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLY 401



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 141/318 (44%), Gaps = 15/318 (4%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +   L++V+  +G    A+   + +R     P+    N ++      RD++  L + L  
Sbjct: 124 VVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRL--ARDRSGRLVRRL-- 179

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F+++       PN+ T+NI++    +   + +  +LF  + E    PD+ T+N ++D YG
Sbjct: 180 FEQLPA-----PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYG 234

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G + E+E ++  M+ + CK D++T+N LI+ + K   F +ME  +      K +  + 
Sbjct: 235 KCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCK---FGRMETAYGYFAAMKREGVMA 291

Query: 193 ---TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              TF++ +  + K  L  +A  +F +M       +  TY C+I        +  A  + 
Sbjct: 292 NVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLL 351

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE+ + G  + V T   +++  C      EA+ +       GV  +   Y  L   +   
Sbjct: 352 DEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMN 411

Query: 310 NMKELVQKLLKRMEQNGI 327
              E    LL  M+  G+
Sbjct: 412 KNSEKALGLLSEMKNKGL 429



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 135/306 (44%), Gaps = 12/306 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + K+ +   A  +   M  +G R +  +Y  LI  H   ++  KAL    G  
Sbjct: 366 YTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKAL----GLL 421

Query: 74  QKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +MK  G+E    +I  Y  L++       +D+  +L  ++ ES L P+   Y  +MDA 
Sbjct: 422 SEMKNKGLEL---DISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDAC 478

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K+G + E  ++L ++  +  +P++IT+  LID   K  + D+    F  +      P +
Sbjct: 479 FKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNV 538

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             + +++    K     +A  +F +M     +   + Y  ++  Y    N+  A  +  +
Sbjct: 539 QAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAK 598

Query: 252 LSKLGKDMKVSTLNAMLEAYC-MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-A 309
           +   G  + +      +  +C +N +P EA  +F      G+ PD + Y  L   Y K  
Sbjct: 599 MIDSGLQLDLFCYTCFISGFCNLNMMP-EAREVFSEMIGHGIAPDRAVYNCLISKYQKLG 657

Query: 310 NMKELV 315
           N++E +
Sbjct: 658 NLEEAI 663



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 135/317 (42%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ +I  + K+G+   A  LFS M+  GC PD   +N+LI  +     K   L +     
Sbjct: 191 FNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGY----GKCGELDEVEQLV 246

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M+    CK ++VTYN L+    +   ++     F  +    +  ++ T++  +DA+ K
Sbjct: 247 EEMR-RSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCK 305

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G+++E   + ++M+      +  T+  LID   K    D    +   ++       + T
Sbjct: 306 EGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVT 365

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +  ++    K R   +AE V + M       + + Y  +I  +    N  +A  +  E+ 
Sbjct: 366 YTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMK 425

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G ++ +S   A+++  C      EA  L       G+ P+   Y  +  A  K+    
Sbjct: 426 NKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVP 485

Query: 314 LVQKLLKRMEQNGIVPN 330
               +L+++  +G  PN
Sbjct: 486 EAIAMLQKILDSGFQPN 502



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 132/307 (42%), Gaps = 7/307 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+   +A+   +S  +    K+G  R AM LF++MR  G   +   Y  LI        K
Sbjct: 285 KREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTC----K 340

Query: 63  AKALAKALGYFQKMKGMERCKP-NIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           A  L  A+    +M  + +  P N+VTY +L+    + R V +   + + + ++ +  + 
Sbjct: 341 AGRLDDAIVLLDEM--VRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANE 398

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
             Y  ++  +  N   ++   +LS MK+   + DI  +  LI         D+ + +   
Sbjct: 399 LLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTK 458

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           +  S  +P    + +M+    K+    +A  + QK+    + P+ ITY  +I       +
Sbjct: 459 MDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGS 518

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +  A   F+++  LG D  V    A+++  C NG   EA  LF    + G++ D   Y  
Sbjct: 519 IDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTA 578

Query: 302 LYKAYTK 308
           L   Y K
Sbjct: 579 LLDGYLK 585



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 122/294 (41%), Gaps = 48/294 (16%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLH 58
           M ++    A+  +Y+ LI        +  A+ L SEM+N G   D S+Y ALI    ++H
Sbjct: 388 MMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVH 447

Query: 59  TRDKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
             D+AK+L        KM   G+E   PN + Y  ++ AC ++  V +  A+ +++ +S 
Sbjct: 448 KLDEAKSL------LTKMDESGLE---PNYIIYTTMMDACFKSGKVPEAIAMLQKILDSG 498

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
             P++ TY  ++D   K G I E  S  ++M+     P++  +  L+D   K    ++  
Sbjct: 499 FQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAV 558

Query: 177 QVFKSLMH-----------------------------------SKEKPTLPTFNSMIINY 201
           Q+F  ++H                                   S  +  L  +   I  +
Sbjct: 559 QLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGF 618

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
               +  +A  VF +M      P    Y C+I+ Y    N+  A  + DE+ ++
Sbjct: 619 CNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMERV 672



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 149/379 (39%), Gaps = 50/379 (13%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+   + D   ++ LI   GK G+      L  EMR SGC+ D   YNALI        K
Sbjct: 215 KEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFC----K 270

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              +  A GYF  MK  E    N+VT++  + A  +   V +   LF ++    +A + +
Sbjct: 271 FGRMETAYGYFAAMK-REGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEF 329

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++D   K G + +   +L  M       +++T+ +L+D   K +   + E V + +
Sbjct: 330 TYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMM 389

Query: 183 --------------------MHSKEKPTLPTFNSM--------IINYGKARLQG------ 208
                               M+   +  L   + M        I  YG A +QG      
Sbjct: 390 EKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYG-ALIQGLCNVHK 448

Query: 209 --KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL---GKDMKVST 263
             +A+ +  KM      P++I Y    TM   C    +  E    L K+   G    V T
Sbjct: 449 LDEAKSLLTKMDESGLEPNYIIY---TTMMDACFKSGKVPEAIAMLQKILDSGFQPNVIT 505

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKLLKRM 322
             A+++  C  G   EA   F    ++G+ P+   Y  L     K   + E VQ L   M
Sbjct: 506 YCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQ-LFNEM 564

Query: 323 EQNGIVPNKRFFLEALETF 341
              G+  +K  +   L+ +
Sbjct: 565 VHKGMSLDKVVYTALLDGY 583



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 4/180 (2%)

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           L+     R   D   +    +   +  P   T N +++   + R       +F+++ A  
Sbjct: 128 LLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQLPA-- 185

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
             P+  T+  +I        ++ AR +F  + ++G    V T N++++ Y   G   E +
Sbjct: 186 --PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVE 243

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            L E     G   D  TY  L   + K    E        M++ G++ N   F   ++ F
Sbjct: 244 QLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAF 303


>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
 gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
          Length = 637

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 111/222 (50%), Gaps = 1/222 (0%)

Query: 96  CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
           C   + ++ ++ L   + E  +  D+  YN V  A GK   +  + ++  +MK+N   PD
Sbjct: 404 CNAEKTLEAID-LLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPD 462

Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
           + T+N++I SYG+    DK  ++F+ +  S  KP + T+NS+I   GK     +A  +F+
Sbjct: 463 VFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFK 522

Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
           +M    Y P   TY  +I  +G  + V  A  +FDE+   G    + T N +L+     G
Sbjct: 523 EMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRG 582

Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
              EA  L+E     G+ PDS TY +L +  +++     ++K
Sbjct: 583 KTEEAHKLYETMKQQGLIPDSITYSILERLESRSQRTVRIRK 624



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 166/377 (44%), Gaps = 45/377 (11%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           KQ+  + D   Y+ LI + GK G+T   +  F EM + GC  +   +N +I A      K
Sbjct: 248 KQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEA----LGK 303

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
            K + K +    KM   + C+PN  TY+I L   A    + ++N +  ++    +   IY
Sbjct: 304 NKMVDKVIFVLSKMVEND-CQPNQFTYSITLDILATEGQLHRLNEVL-DICSRFMNRSIY 361

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD--------------------------- 155
           +Y  ++ +  K+G   E  +V  RM ++  K D                           
Sbjct: 362 SY--LVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMM 419

Query: 156 ----IIT----FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
               I+T    +N++  + GK +    +  +F  +  +   P + T+N MI +YG+  L 
Sbjct: 420 PEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLV 479

Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
            KA  +F+ M A    P  +TY  +I   G   ++  A  +F E+ + G D  V T + +
Sbjct: 480 DKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSIL 539

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           +E +  +     A  LF+   + G TP+  TY +L     +    E   KL + M+Q G+
Sbjct: 540 IECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGL 599

Query: 328 VPNKRFF--LEALETFS 342
           +P+   +  LE LE+ S
Sbjct: 600 IPDSITYSILERLESRS 616



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 108/195 (55%), Gaps = 5/195 (2%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           M  ++  + D G+Y+ + + +GK  Q      LF +M+ +G  PD   YN +I+++    
Sbjct: 418 MMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSY---- 473

Query: 61  DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
            +   + KA   F+ M+    CKP++VTYN L+    +  ++D+ + LFKE+ E    PD
Sbjct: 474 GRVGLVDKASELFEVMEA-SSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPD 532

Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
           ++TY+ +++ +GK+  ++   S+   M S  C P+I+T+N+L+D   +R   ++  ++++
Sbjct: 533 VFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYE 592

Query: 181 SLMHSKEKPTLPTFN 195
           ++      P   T++
Sbjct: 593 TMKQQGLIPDSITYS 607



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 140/347 (40%), Gaps = 18/347 (5%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           +++ Y  D   Y+ L+  + K G    A  +F +M+   C PD   Y  LI        K
Sbjct: 213 RRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILI----RMSGK 268

Query: 63  AKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
           A   +K L +F +M  KG   C  N++ +N ++ A  + + VD+V  +  ++ E+   P+
Sbjct: 269 AGRTSKFLSFFDEMVSKG---CVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPN 325

Query: 121 IYTYNGVMDAYGKNGMIKEMESVL---SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
            +TY+  +D     G +  +  VL   SR  +         ++ L+ S  K     +   
Sbjct: 326 QFTYSITLDILATEGQLHRLNEVLDICSRFMNRS------IYSYLVKSLCKSGHASEAHN 379

Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
           VF  + +S EK     F SM+     A    +A  +   M           Y  + +  G
Sbjct: 380 VFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALG 439

Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
               VS    +FD++   G    V T N M+ +Y   GL  +A  LFE        PD  
Sbjct: 440 KLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVV 499

Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
           TY  L     K    +    L K M++ G  P+   +   +E F  S
Sbjct: 500 TYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKS 546



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 144/357 (40%), Gaps = 47/357 (13%)

Query: 10  DTGIYSKLIAVMGK-KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
           D   Y++++A++ + +     A+ L ++M   G   + S  N L+       +  + L  
Sbjct: 117 DAFSYNRILALLFRTRAGPSEALRLVADMERDGVAGNISTINLLVGMGGGGVEMERCLEL 176

Query: 69  ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
           A  +  ++ G         TY  +++A  ++R V +   +++E+       DI+ YN ++
Sbjct: 177 ASKWGLRLSGY--------TYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLL 228

Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
           DA  K GM+ +   V   MK   C PD  T+ +LI   GK     K    F  ++     
Sbjct: 229 DALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCV 288

Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             L  FN++I   GK ++  K  +V  KM      P+  TY   + +      + R  E+
Sbjct: 289 LNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEV 348

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF---ENSH----------------- 288
            D  S+    M  S  + ++++ C +G  +EA  +F    NSH                 
Sbjct: 349 LDICSRF---MNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCN 405

Query: 289 ---------------NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
                            G+  D   Y +++ A  K      +  L  +M+ NGI+P+
Sbjct: 406 AEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPD 462



 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
           TY+CI+  +     VS+  ++++E+ + G  + +   N +L+A    G+  +A  +FE+ 
Sbjct: 188 TYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDM 247

Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF---LEAL 338
                 PD+ TY +L +   KA            M   G V N   F   +EAL
Sbjct: 248 KQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEAL 301


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 157/344 (45%), Gaps = 27/344 (7%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDP------SVYNALIT 54
           + + R Y     + S+L+A+     +  LA  L   +  +     P      SV + L++
Sbjct: 75  LARDRLYAHSRRVLSRLVALR----RPHLAASLVDLLHRAALALGPRRSALASVVDTLLS 130

Query: 55  AHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN-ILLRACAQARNVDQVNALFKELH 113
             L  R       +A+   +++    R  PN  T N ILLR    AR  D+   L + L 
Sbjct: 131 V-LADRGLLDDAVRAVARVREL----RVPPNTRTCNHILLRL---AR--DRSGRLVRRLF 180

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
           E + AP+++T+N V+D   K G + E  S+ SRMK   C PD++TFN LID YGK    D
Sbjct: 181 EQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELD 240

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYE 230
           ++EQ+ + +  S  K  + T+N++I  + K    G+ E  +    AMK      + +T+ 
Sbjct: 241 EVEQLVEEMRRSGCKADVVTYNALINCFCKF---GRMETAYGYFAAMKREGVMANVVTFS 297

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
             +  +     V  A ++F ++   G  +   T   +++  C  G   +A +L +     
Sbjct: 298 TFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQ 357

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           GV  +  TY +L     K       + +L+ ME+ G+  N+  +
Sbjct: 358 GVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLY 401



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 141/318 (44%), Gaps = 15/318 (4%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +   L++V+  +G    A+   + +R     P+    N ++      RD++  L + L  
Sbjct: 124 VVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRL--ARDRSGRLVRRL-- 179

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F+++       PN+ T+NI++    +   + +  +LF  + E    PD+ T+N ++D YG
Sbjct: 180 FEQLPA-----PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYG 234

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV---FKSLMHSKEKP 189
           K G + E+E ++  M+ + CK D++T+N LI+ + K   F +ME     F ++       
Sbjct: 235 KCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCK---FGRMETAYGYFAAMKREGVMA 291

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            + TF++ +  + K  L  +A  +F +M       +  TY C+I        +  A  + 
Sbjct: 292 NVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLL 351

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE+ + G  + V T   +++  C      EA+ +       GV  +   Y  L   +   
Sbjct: 352 DEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMN 411

Query: 310 NMKELVQKLLKRMEQNGI 327
              E    LL  M+  G+
Sbjct: 412 KNSEKALGLLSEMKNKGL 429



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 135/306 (44%), Gaps = 12/306 (3%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + K+ +   A  +   M  +G R +  +Y  LI  H   ++  KAL    G  
Sbjct: 366 YTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKAL----GLL 421

Query: 74  QKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +MK  G+E    +I  Y  L++       +D+  +L  ++ ES L P+   Y  +MDA 
Sbjct: 422 SEMKNKGLEL---DISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDAC 478

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K+G + E  ++L ++  +  +P++IT+  LID   K  + D+    F  +      P +
Sbjct: 479 FKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNV 538

Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
             + +++    K     +A  +F +M     +   + Y  ++  Y    N+  A  +  +
Sbjct: 539 QAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAK 598

Query: 252 LSKLGKDMKVSTLNAMLEAYC-MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-A 309
           +   G  + +      +  +C +N +P EA  +F      G+ PD + Y  L   Y K  
Sbjct: 599 MIDSGLQLDLFCYTCFISGFCNLNMMP-EAREVFSEMIGHGIAPDRAVYNCLISKYQKLG 657

Query: 310 NMKELV 315
           N++E +
Sbjct: 658 NLEEAI 663



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 135/317 (42%), Gaps = 5/317 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ +I  + K+G+   A  LFS M+  GC PD   +N+LI  +     K   L +     
Sbjct: 191 FNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGY----GKCGELDEVEQLV 246

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M+    CK ++VTYN L+    +   ++     F  +    +  ++ T++  +DA+ K
Sbjct: 247 EEMR-RSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCK 305

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G+++E   + ++M+      +  T+  LID   K    D    +   ++       + T
Sbjct: 306 EGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVT 365

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +  ++    K R   +AE V + M       + + Y  +I  +    N  +A  +  E+ 
Sbjct: 366 YTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMK 425

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G ++ +S   A+++  C      EA  L       G+ P+   Y  +  A  K+    
Sbjct: 426 NKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVP 485

Query: 314 LVQKLLKRMEQNGIVPN 330
               +L+++  +G  PN
Sbjct: 486 EAIAMLQKILDSGFQPN 502



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 132/307 (42%), Gaps = 7/307 (2%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+   +A+   +S  +    K+G  R AM LF++MR  G   +   Y  LI        K
Sbjct: 285 KREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTC----K 340

Query: 63  AKALAKALGYFQKMKGMERCKP-NIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           A  L  A+    +M  + +  P N+VTY +L+    + R V +   + + + ++ +  + 
Sbjct: 341 AGRLDDAIVLLDEM--VRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANE 398

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
             Y  ++  +  N   ++   +LS MK+   + DI  +  LI         D+ + +   
Sbjct: 399 LLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTK 458

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           +  S  +P    + +M+    K+    +A  + QK+    + P+ ITY  +I       +
Sbjct: 459 MDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGS 518

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
           +  A   F+++  LG D  V    A+++  C NG   EA  LF    + G++ D   Y  
Sbjct: 519 IDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTA 578

Query: 302 LYKAYTK 308
           L   Y K
Sbjct: 579 LLDGYLK 585



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 149/379 (39%), Gaps = 50/379 (13%)

Query: 3   KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
           K+   + D   ++ LI   GK G+      L  EMR SGC+ D   YNALI        K
Sbjct: 215 KEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFC----K 270

Query: 63  AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
              +  A GYF  MK  E    N+VT++  + A  +   V +   LF ++    +A + +
Sbjct: 271 FGRMETAYGYFAAMK-REGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEF 329

Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
           TY  ++D   K G + +   +L  M       +++T+ +L+D   K +   + E V + +
Sbjct: 330 TYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMM 389

Query: 183 --------------------MHSKEKPTLPTFNSM--------IINYGKARLQG------ 208
                               M+   +  L   + M        I  YG A +QG      
Sbjct: 390 EKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYG-ALIQGLCNVHK 448

Query: 209 --KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL---GKDMKVST 263
             +A+ +  KM      P++I Y    TM   C    +  E    L K+   G    V T
Sbjct: 449 LDEAKSLLTKMDESGLEPNYIIY---TTMMDACFKSGKVPEAIAMLQKILDSGFQPNVIT 505

Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKLLKRM 322
             A+++  C  G   EA   F    ++G+ P+   Y  L     K   + E VQ L   M
Sbjct: 506 YCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQ-LFNEM 564

Query: 323 EQNGIVPNKRFFLEALETF 341
              G+  +K  +   L+ +
Sbjct: 565 VHKGMSLDKVVYTALLDGY 583



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 122/294 (41%), Gaps = 48/294 (16%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLH 58
           M ++    A+  +Y+ LI        +  A+ L SEM+N G   D S+Y ALI    ++H
Sbjct: 388 MMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVH 447

Query: 59  TRDKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
             D+AK+L        KM   G+E   PN + Y  ++ AC ++  V +  A+ +++ +S 
Sbjct: 448 KLDEAKSL------LTKMDESGLE---PNYIIYTTMMDACFKSGKVPEAIAMLQKILDSG 498

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
             P++ TY  ++D   K G I E  S  ++M+     P++  +  L+D   K    ++  
Sbjct: 499 FQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAV 558

Query: 177 QVFKSLMH-----------------------------------SKEKPTLPTFNSMIINY 201
           Q+F  ++H                                   S  +  L  +   I  +
Sbjct: 559 QLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGF 618

Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
               +  +A  VF +M      P    Y C+I+ Y    N+  A  + DE+ ++
Sbjct: 619 CNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMERV 672



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 4/180 (2%)

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           L+     R   D   +    +   +  P   T N +++   + R       +F+++ A  
Sbjct: 128 LLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQLPA-- 185

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
             P+  T+  +I        ++ AR +F  + ++G    V T N++++ Y   G   E +
Sbjct: 186 --PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVE 243

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            L E     G   D  TY  L   + K    E        M++ G++ N   F   ++ F
Sbjct: 244 QLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAF 303


>gi|302808451|ref|XP_002985920.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
 gi|300146427|gb|EFJ13097.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
          Length = 574

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 130/301 (43%), Gaps = 5/301 (1%)

Query: 2   QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
           +KQ  +  D   Y+ ++ ++G+     +   L  EM   GC P+   YN LI    H   
Sbjct: 58  RKQAGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLI----HCYG 113

Query: 62  KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
           +A  L  +L  F  M+ M  C+P+ VTY  L+   A+A   D    L++++  +   PD 
Sbjct: 114 RANDLDSSLKLFNVMQ-MVGCEPDRVTYCTLIDLQAKAGFHDAAMELYRQMQHAGFRPDT 172

Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
           +TY+ ++   GK G +     +   M      P ++T+N++ID + K   FD   +++  
Sbjct: 173 FTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSD 232

Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
           L      P   T+  ++   G       AE VF++M    +      +  ++ M+G   N
Sbjct: 233 LQEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGN 292

Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
             +A + F+ +   G    V   N++L AY  +     A  +       G+ P   TY  
Sbjct: 293 AEKAAQWFNRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKWGLYPTLQTYTS 352

Query: 302 L 302
           L
Sbjct: 353 L 353



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 129/289 (44%), Gaps = 5/289 (1%)

Query: 83  KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
           K ++ TY  +L    +A++ D +N L  E+      P++ TYN ++  YG+   +     
Sbjct: 64  KHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDLDSSLK 123

Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
           + + M+   C+PD +T+  LID   K    D   ++++ + H+  +P   T++ +I   G
Sbjct: 124 LFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMELYRQMQHAGFRPDTFTYSIIIHCLG 183

Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
           KA     A  +F +MT   Y PS +TY  II ++        A +++ +L ++G      
Sbjct: 184 KAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDRV 243

Query: 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
           T   ++E     G   +A+ +FE     G   D+  + L+   + K    E   +   RM
Sbjct: 244 TYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWFNRM 303

Query: 323 EQNGIVPNK---RFFLEAL--ETFSSSLAGSQSGSAKTDLTRSLSTAKS 366
             +G+ PN       L A    +F  +  G   G AK  L  +L T  S
Sbjct: 304 LDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKWGLYPTLQTYTS 352



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 112/246 (45%), Gaps = 9/246 (3%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           D   Y  LI +  K G    AM L+ +M+++G RPD   Y+ +I    H   KA  L  A
Sbjct: 136 DRVTYCTLIDLQAKAGFHDAAMELYRQMQHAGFRPDTFTYSIII----HCLGKAGKLNAA 191

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
              F +M       P++VTYNI++   A+A   D    L+ +L E   APD  TY  +M+
Sbjct: 192 YKLFCEMTD-RGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDRVTYGIIME 250

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
             G  G I++ E V   M+      D   F L++D +GK    +K  Q F  ++ S  +P
Sbjct: 251 VLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWFNRMLDSGLQP 310

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
            +P  NS++  Y ++     A  V   M      P+  TY  +++    C    RA   +
Sbjct: 311 NVPACNSLLSAYLRSSFYDAAGGVLGGMAKWGLYPTLQTYTSLLSSCAAC----RAAWEY 366

Query: 250 DELSKL 255
           D L  L
Sbjct: 367 DALFGL 372



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 121/267 (45%), Gaps = 7/267 (2%)

Query: 80  ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
           E C+PN+VTYN L+    +A ++D    LF  +      PD  TY  ++D   K G    
Sbjct: 96  EGCEPNVVTYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDA 155

Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
              +  +M+    +PD  T++++I   GK    +   ++F  +      P+L T+N +I 
Sbjct: 156 AMELYRQMQHAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIID 215

Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
            + KA     A  ++  +  + Y P  +TY  I+ + G C ++  A ++F+E+ + G   
Sbjct: 216 LHAKAGKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVA 275

Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
                  M++ +   G   +A   F    + G+ P+      L  AY +++  +    +L
Sbjct: 276 DNPIFGLMVDMWGKTGNAEKAAQWFNRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVL 335

Query: 320 KRMEQNGIVPNKRFFLEALETFSSSLA 346
             M + G+ P        L+T++S L+
Sbjct: 336 GGMAKWGLYPT-------LQTYTSLLS 355



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 117/271 (43%), Gaps = 5/271 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y++LI   G+      ++ LF+ M+  GC PD   Y  LI      + KA     A+  +
Sbjct: 105 YNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCTLID----LQAKAGFHDAAMELY 160

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M+     +P+  TY+I++    +A  ++    LF E+ +   AP + TYN ++D + K
Sbjct: 161 RQMQ-HAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAK 219

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G       + S ++     PD +T+ ++++  G     +  EQVF+ +  +      P 
Sbjct: 220 AGKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPI 279

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           F  M+  +GK     KA   F +M      P+      +++ Y        A  +   ++
Sbjct: 280 FGLMVDMWGKTGNAEKAAQWFNRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMA 339

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 284
           K G    + T  ++L +        E D LF
Sbjct: 340 KWGLYPTLQTYTSLLSSCAACRAAWEYDALF 370



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 93/208 (44%), Gaps = 5/208 (2%)

Query: 10  DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
           DT  YS +I  +GK G+   A  LF EM + G  P    YN +I  H     KA     A
Sbjct: 171 DTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHA----KAGKFDMA 226

Query: 70  LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
           L  +  ++ +    P+ VTY I++       +++    +F+E+  +    D   +  ++D
Sbjct: 227 LKLYSDLQEVGY-APDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVD 285

Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
            +GK G  ++     +RM  +  +P++   N L+ +Y +   +D    V   +      P
Sbjct: 286 MWGKTGNAEKAAQWFNRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKWGLYP 345

Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKM 217
           TL T+ S++ +    R   + + +F  M
Sbjct: 346 TLQTYTSLLSSCAACRAAWEYDALFGLM 373


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 157/344 (45%), Gaps = 27/344 (7%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDP------SVYNALIT 54
           + + R Y     + S+L+A+     +  LA  L   +  +     P      SV + L++
Sbjct: 75  LARDRLYAHSRRVLSRLVALR----RPHLAASLVDLLHRAALALGPRRSALASVVDTLLS 130

Query: 55  AHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN-ILLRACAQARNVDQVNALFKELH 113
             L  R       +A+   +++    R  PN  T N ILLR    AR  D+   L + L 
Sbjct: 131 V-LADRGLLDDAVRAVARVREL----RVPPNTRTCNHILLRL---AR--DRSGRLVRRLF 180

Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
           E + AP+++T+N V+D   K G + E  S+ SRMK   C PD++TFN LID YGK    D
Sbjct: 181 EQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELD 240

Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYE 230
           ++EQ+ + +  S  K  + T+N++I  + K    G+ E  +    AMK      + +T+ 
Sbjct: 241 EVEQLVEEMRRSGCKADVVTYNALINCFCKF---GRMETAYGYFAAMKREGVMANVVTFS 297

Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
             +  +     V  A ++F ++   G  +   T   +++  C  G   +A +L +     
Sbjct: 298 TFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQ 357

Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
           GV  +  TY +L     K       + +L+ ME+ G+  N+  +
Sbjct: 358 GVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLY 401



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 141/318 (44%), Gaps = 15/318 (4%)

Query: 13  IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
           +   L++V+  +G    A+   + +R     P+    N ++      RD++  L + L  
Sbjct: 124 VVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRL--ARDRSGRLVRRL-- 179

Query: 73  FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
           F+++       PN+ T+NI++    +   + +  +LF  + E    PD+ T+N ++D YG
Sbjct: 180 FEQLPA-----PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYG 234

Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
           K G + E+E ++  M+ + CK D++T+N LI+ + K   F +ME  +      K +  + 
Sbjct: 235 KCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCK---FGRMETAYGYFAAMKREGVMA 291

Query: 193 ---TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
              TF++ +  + K  L  +A  +F +M       +  TY C+I        +  A  + 
Sbjct: 292 NVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLL 351

Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
           DE+ + G  + V T   +++  C      EA+ +       GV  +   Y  L   +   
Sbjct: 352 DEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMN 411

Query: 310 NMKELVQKLLKRMEQNGI 327
              E    LL  M+  G+
Sbjct: 412 KNSEKALGLLSEMKNKGL 429



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 141/329 (42%), Gaps = 5/329 (1%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           ++ +I  + K+G+   A  LFS M+  GC PD   +N+LI  +     K   L +     
Sbjct: 191 FNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGY----GKCGELDEVEQLV 246

Query: 74  QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
           ++M+    CK ++VTYN L+    +   ++     F  +    +  ++ T++  +DA+ K
Sbjct: 247 EEMR-RSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCK 305

Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
            G+++E   + ++M+      +  T+  LID   K    D    +   ++       + T
Sbjct: 306 EGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVT 365

Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
           +  ++    K R   +AE V + M       + + Y  +I  +    N  +A  +  E+ 
Sbjct: 366 YTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMK 425

Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
             G ++ +S   A+++  C      EA  L       G+ P+   Y  +  A  K+    
Sbjct: 426 NKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVP 485

Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFS 342
               +L+++  +G  PN     EA++ F+
Sbjct: 486 EAIAMLQKILDSGFQPNNGCLNEAVQLFN 514



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 100/238 (42%), Gaps = 26/238 (10%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLH 58
           M ++    A+  +Y+ LI        +  A+ L SEM+N G   D S+Y ALI    ++H
Sbjct: 388 MMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVH 447

Query: 59  TRDKAKALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
             D+AK+L        KM   G+E   PN + Y  ++ AC ++  V +  A+ +++ +S 
Sbjct: 448 KLDEAKSL------LTKMDESGLE---PNYIIYTTMMDACFKSGKVPEAIAMLQKILDSG 498

Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
             P+             NG + E   + + M       D + +  L+D Y K+       
Sbjct: 499 FQPN-------------NGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAF 545

Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
            +   ++ S  +  L  +   I  +    +  +A  VF +M      P    Y C+IT
Sbjct: 546 ALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLIT 603



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/294 (20%), Positives = 111/294 (37%), Gaps = 63/294 (21%)

Query: 14  YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
           Y+ L+  + K+ +   A  +   M  +G R +  +Y  LI  H   ++  KAL    G  
Sbjct: 366 YTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKAL----GLL 421

Query: 74  QKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
            +MK  G+E    +I  Y  L++       +D+  +L  ++ ES L P+   Y  +MDA 
Sbjct: 422 SEMKNKGLEL---DISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDAC 478

Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
            K+G + E  ++L ++  +  +P+                 ++  Q+F  ++H       
Sbjct: 479 FKSGKVPEAIAMLQKILDSGFQPN-------------NGCLNEAVQLFNEMVHKGMSLDK 525

Query: 192 PTFNSMIINYGKARLQGKAEYVFQ---KMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
             + +++  Y K   QG     F    KM           Y C I+ +   + +  ARE+
Sbjct: 526 VVYTALLDGYLK---QGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREV 582

Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
           F E+  +G                                  G+ PD + Y  L
Sbjct: 583 FSEM--IGH---------------------------------GIAPDRAVYNCL 601



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 4/180 (2%)

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           L+     R   D   +    +   +  P   T N +++   + R       +F+++ A  
Sbjct: 128 LLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQLPA-- 185

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
             P+  T+  +I        ++ AR +F  + ++G    V T N++++ Y   G   E +
Sbjct: 186 --PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVE 243

Query: 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
            L E     G   D  TY  L   + K    E        M++ G++ N   F   ++ F
Sbjct: 244 QLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAF 303


>gi|302819015|ref|XP_002991179.1| hypothetical protein SELMODRAFT_448320 [Selaginella moellendorffii]
 gi|300141007|gb|EFJ07723.1| hypothetical protein SELMODRAFT_448320 [Selaginella moellendorffii]
          Length = 561

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 14/301 (4%)

Query: 68  KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
           K  G FQ+M  +     NI  Y + +    + R+ D+  A+F+ L  +  +P   TY  +
Sbjct: 172 KTEGIFQRMAELG-VAANIEMYTLQIEGYGRRRSFDKAEAVFQRLLTTGPSPTAQTYQTM 230

Query: 128 MDAYGKNGMIKEMESV---LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
           M +Y + G + +++ +   ++   S   KPD   +NL+I +YGK+   ++   V++S+  
Sbjct: 231 MKSYSEAGRLDDVQRIFKLVTDSPSPTVKPDARMYNLMIHTYGKQGKVEQAMSVYQSMKR 290

Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
            +   T+ TFNS++      +    AE VF+K+ A K  P   +Y  ++  Y        
Sbjct: 291 ERVALTIVTFNSLL---ACQKTWKDAEDVFRKLQAAKLDPDVFSYTALVNAYAKARRAEC 347

Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
           A   FD++   G        NA++ AY     P  A  + +     G TP   +Y  L  
Sbjct: 348 AHAAFDDMIAAGIRPTQVAYNALINAYAKCKDPEGARAVLKQMKQNGCTPTVESYTSLIS 407

Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRSLSTA 364
           AY   N+    ++ + RM++  + PN       L+TF   + G  +G+   ++ RS  T 
Sbjct: 408 AYVSVNLMAKAEQTVLRMKEADLQPN-------LQTFCILMTGYANGNKLDNMMRSFETM 460

Query: 365 K 365
           K
Sbjct: 461 K 461



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 154/349 (44%), Gaps = 15/349 (4%)

Query: 1   MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
           + +Q WY  +   Y  ++    K GQ      +F  M   G   +  +Y   I  +   R
Sbjct: 144 LMEQGWYNFNQKDYFLVLLAYCKDGQVDKTEGIFQRMAELGVAANIEMYTLQIEGYGRRR 203

Query: 61  --DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES--- 115
             DKA+A+      FQ++       P   TY  ++++ ++A  +D V  +FK + +S   
Sbjct: 204 SFDKAEAV------FQRLLTTGP-SPTAQTYQTMMKSYSEAGRLDDVQRIFKLVTDSPSP 256

Query: 116 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 175
            + PD   YN ++  YGK G +++  SV   MK  +    I+TFN L+     ++ +   
Sbjct: 257 TVKPDARMYNLMIHTYGKQGKVEQAMSVYQSMKRERVALTIVTFNSLL---ACQKTWKDA 313

Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
           E VF+ L  +K  P + ++ +++  Y KAR    A   F  M A    P+ + Y  +I  
Sbjct: 314 EDVFRKLQAAKLDPDVFSYTALVNAYAKARRAECAHAAFDDMIAAGIRPTQVAYNALINA 373

Query: 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
           Y  C +   AR +  ++ + G    V +  +++ AY    L  +A+          + P+
Sbjct: 374 YAKCKDPEGARAVLKQMKQNGCTPTVESYTSLISAYVSVNLMAKAEQTVLRMKEADLQPN 433

Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
             T+ +L   Y   N  + + +  + M+  G+ PN+  +   +  + S+
Sbjct: 434 LQTFCILMTGYANGNKLDNMMRSFETMKLAGLEPNRHVYTVLVNAYGSN 482



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 145/322 (45%), Gaps = 24/322 (7%)

Query: 33  LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
           L ++  +   +PD  +YN +I    HT  K   + +A+  +Q MK  ER    IVT+N L
Sbjct: 249 LVTDSPSPTVKPDARMYNLMI----HTYGKQGKVEQAMSVYQSMK-RERVALTIVTFNSL 303

Query: 93  LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
           L      ++ + V   F++L  + L PD+++Y  +++AY K    +   +    M +   
Sbjct: 304 LACQKTWKDAEDV---FRKLQAAKLDPDVFSYTALVNAYAKARRAECAHAAFDDMIAAGI 360

Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
           +P  + +N LI++Y K +  +    V K +  +   PT+ ++ S+I  Y    L  KAE 
Sbjct: 361 RPTQVAYNALINAYAKCKDPEGARAVLKQMKQNGCTPTVESYTSLISAYVSVNLMAKAEQ 420

Query: 213 VFQKMTAMKYTPSFITYECIITMYGYC-----DNVSRAREIFDELSKLGKDMKVSTLNAM 267
              +M      P+  T+ CI+ M GY      DN+ R+ E   +L+ L  +  V T+  +
Sbjct: 421 TVLRMKEADLQPNLQTF-CIL-MTGYANGNKLDNMMRSFETM-KLAGLEPNRHVYTV--L 475

Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
           + AY  N     A + ++     G  PD     +L K        E + +LL      G+
Sbjct: 476 VNAYGSNDDFDSAIIWYKQMLGTGCKPDPILRTVLLKIAKSHEQTEEIHELL------GM 529

Query: 328 VPNKRFFLEALETFSSSLAGSQ 349
             + R   E L+T   +L   Q
Sbjct: 530 QKSARSLEEGLDTGVDTLVLPQ 551


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.319    0.131    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,212,494,087
Number of Sequences: 23463169
Number of extensions: 202528361
Number of successful extensions: 829625
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6226
Number of HSP's successfully gapped in prelim test: 5715
Number of HSP's that attempted gapping in prelim test: 658825
Number of HSP's gapped (non-prelim): 70321
length of query: 366
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 222
effective length of database: 8,980,499,031
effective search space: 1993670784882
effective search space used: 1993670784882
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)