BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017743
         (366 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2O96|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34
           Mpn Domain (Residues 1-177)
 pdb|2O96|B Chain B, Crystal Structure Of The Metal-Free Dimeric Human Mov34
           Mpn Domain (Residues 1-177)
          Length = 178

 Score = 31.6 bits (70), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 31/154 (20%)

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           ++D + +       ++V   L+ S +K  L   NS  + + +     K + V+       
Sbjct: 20  VVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE---DDKDDSVW------- 69

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS--TLNAMLEAYCMN----- 274
               F+ ++ +  MYG    V+ ARE        G  +  +   +N +++ YC N     
Sbjct: 70  ----FLDHDYLENMYGMFKKVN-ARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVI 124

Query: 275 --------GLPTEADLLFENSHNMGVTPDSSTYK 300
                   GLPTEA +  E  H+ G TP S T++
Sbjct: 125 IDVKPKDLGLPTEAYISVEEVHDDG-TPTSKTFE 157


>pdb|2O95|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34
           Mpn Domain (Residues 1-186)
 pdb|2O95|B Chain B, Crystal Structure Of The Metal-Free Dimeric Human Mov34
           Mpn Domain (Residues 1-186)
          Length = 187

 Score = 31.2 bits (69), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 31/154 (20%)

Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
           ++D + +       ++V   L+ S +K  L   NS  + + +     K + V+       
Sbjct: 20  VVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE---DDKDDSVW------- 69

Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS--TLNAMLEAYCMN----- 274
               F+ ++ +  MYG    V+ ARE        G  +  +   +N +++ YC N     
Sbjct: 70  ----FLDHDYLENMYGMFKKVN-ARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVI 124

Query: 275 --------GLPTEADLLFENSHNMGVTPDSSTYK 300
                   GLPTEA +  E  H+ G TP S T++
Sbjct: 125 IDVKPKDLGLPTEAYISVEEVHDDG-TPTSKTFE 157


>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
          Length = 1134

 Score = 30.4 bits (67), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR 169
           YN VM  + + G  KE+  VL  +K     PD++++   +   G++
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ 213


>pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|D Chain D, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|F Chain F, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|H Chain H, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|J Chain J, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|L Chain L, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|N Chain N, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|P Chain P, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
          Length = 589

 Score = 28.9 bits (63), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG-YCDN---VSRAREIF 249
           IIN   +R+      +F + T   +T + I  + I+TM+  YC+N   V  A  +F
Sbjct: 236 IINGDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVF 291


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.132    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,826,052
Number of Sequences: 62578
Number of extensions: 387233
Number of successful extensions: 1081
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1077
Number of HSP's gapped (non-prelim): 8
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)