BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017743
(366 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620,
chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2
SV=1
Length = 563
Score = 563 bits (1452), Expect = e-160, Method: Compositional matrix adjust.
Identities = 264/350 (75%), Positives = 301/350 (86%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
MQKQRWYI D G+YSKLI+VMGKKGQTR+AMWLFSEM+NSGCRPD SVYNALITAHLHTR
Sbjct: 123 MQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTR 182
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
DKAKAL K GY KMKG+ERC+PN+VTYNILLRA AQ+ VDQVNALFK+L S ++PD
Sbjct: 183 DKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPD 242
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
+YT+NGVMDAYGKNGMIKEME+VL+RM+SN+CKPDIITFN+LIDSYGK+Q F+KMEQ FK
Sbjct: 243 VYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFK 302
Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
SLM SKEKPTLPTFNSMIINYGKAR+ KAE+VF+KM M Y PSFITYEC+I MYGYC
Sbjct: 303 SLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCG 362
Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
+VSRAREIF+E+ + + +K STLNAMLE YC NGL EAD LF N+ V PD+STYK
Sbjct: 363 SVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYK 422
Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350
LYKAYTKA+MKE VQ L+K+ME++GIVPNKRFFLEALE F S L GS S
Sbjct: 423 FLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLEALEVFGSRLPGSGS 472
>sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430,
chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2
SV=1
Length = 486
Score = 162 bits (409), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 167/342 (48%), Gaps = 5/342 (1%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
+++Q +Y G Y KL+ ++GK GQ A LF EM G P +Y AL+ A+
Sbjct: 114 LREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYT--- 170
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
++ + A KMK +C+P++ TY+ LL+AC A D V++L+KE+ E ++ P+
Sbjct: 171 -RSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPN 229
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
T N V+ YG+ G +ME VLS M S CKPD+ T N+++ +G D ME +
Sbjct: 230 TVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWY 289
Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
+ + +P TFN +I +YGK R+ K V + M +++ + TY II +
Sbjct: 290 EKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADV 349
Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
+ FD++ G T ++ Y GL + + + + +++ Y
Sbjct: 350 GDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFY 409
Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
+ A KA+ ++++ RM++ V + R F +E +
Sbjct: 410 NAVISACAKADDLIEMERVYIRMKERQCVCDSRTFEIMVEAY 451
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 120/296 (40%), Gaps = 37/296 (12%)
Query: 53 ITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL 112
+T L K +AL F ++ +P TY LL ++ ++ LF E+
Sbjct: 91 VTETLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEM 150
Query: 113 HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITF------------ 159
E L P + Y ++ AY ++ +I + S+L +MKS QC+PD+ T+
Sbjct: 151 LEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQ 210
Query: 160 -----------------------NLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFN 195
N+++ YG+ FD+ME+V ++ S KP + T N
Sbjct: 211 FDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMN 270
Query: 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255
++ +G E ++K P T+ +I YG + + + + KL
Sbjct: 271 IILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKL 330
Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
ST N ++EA+ G +L F+ + G+ D+ T+ L Y A +
Sbjct: 331 EFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGL 386
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 87/225 (38%), Gaps = 47/225 (20%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D + +++V G G+ + + + RN G P+ +N LI ++ R K ++
Sbjct: 265 DVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDK-MSSV 323
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT------ 123
+ Y +K++ TYN ++ A A + + F ++ + D T
Sbjct: 324 MEYMRKLE----FPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLIN 379
Query: 124 -----------------------------YNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154
YN V+ A K + EME V RMK QC
Sbjct: 380 GYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYIRMKERQCVC 439
Query: 155 DIITFNLLIDSYGKRQAFDK---MEQVFKSLMH----SKEKPTLP 192
D TF +++++Y K DK +EQ + LM +KE LP
Sbjct: 440 DSRTFEIMVEAYEKEGMNDKIYYLEQERQKLMDRTVATKEMENLP 484
>sp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g53170
OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1
Length = 447
Score = 162 bits (409), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 169/344 (49%), Gaps = 5/344 (1%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
++KQ WY Y+KL V+G Q A LF M + G +P VY +LI+ +
Sbjct: 84 LRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVY---- 139
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
K++ L KA + MK + CKP++ T+ +L+ C + D V ++ E+ +
Sbjct: 140 GKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCS 199
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
TYN ++D YGK GM +EMESVL+ M + PD+ T N +I SYG + KME +
Sbjct: 200 TVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWY 259
Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
+P + TFN +I+++GKA + K V M ++ + +TY +I +G
Sbjct: 260 SRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKA 319
Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
+ + ++F ++ G T +++ AY GL + D + N V D+ +
Sbjct: 320 GRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFF 379
Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
+ AY +A +++L +ME+ P+K F ++T+++
Sbjct: 380 NCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTA 423
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 127/303 (41%), Gaps = 37/303 (12%)
Query: 69 ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
AL F ++ +P TY L + + DQ + LF+ + L P I Y ++
Sbjct: 77 ALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLI 136
Query: 129 DAYGKNGMIKEMESVLSRMKS-NQCKPDIITF---------------------------- 159
YGK+ ++ + S L MKS + CKPD+ TF
Sbjct: 137 SVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGV 196
Query: 160 -------NLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTFNSMIINYGKARLQGKAE 211
N +ID YGK F++ME V ++ + P + T NS+I +YG R K E
Sbjct: 197 GCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKME 256
Query: 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
+ + M P T+ +I +G + + D + K + T N ++E +
Sbjct: 257 SWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETF 316
Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
G + D +F GV P+S TY L AY+KA + + +L+++ + +V +
Sbjct: 317 GKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDT 376
Query: 332 RFF 334
FF
Sbjct: 377 PFF 379
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 122/256 (47%), Gaps = 13/256 (5%)
Query: 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG-CRPDPSVYNALITAHLHTRDKAKALAKA 69
T Y+ +I GK G + ++M G PD N++I ++ + R+ K +
Sbjct: 200 TVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRK-MESW 258
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
FQ M +P+I T+NIL+ + +A ++ ++ + + + TYN V++
Sbjct: 259 YSRFQLMG----VQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIE 314
Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
+GK G I++M+ V +MK KP+ IT+ L+++Y K K++ V + +++S
Sbjct: 315 TFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVL 374
Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
P FN +I YG+A + ++ +M K P IT+ +I Y A IF
Sbjct: 375 DTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTY-------TAHGIF 427
Query: 250 DELSKLGKDMKVSTLN 265
D + +L K M S N
Sbjct: 428 DAVQELEKQMISSGEN 443
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 5/178 (2%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D ++ LI GK G + + M YN +I T KA + K
Sbjct: 270 DITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVI----ETFGKAGRIEKM 325
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
F+KMK + KPN +TY L+ A ++A V +++++ +++ S + D +N +++
Sbjct: 326 DDVFRKMK-YQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIIN 384
Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
AYG+ G + M+ + +M+ +CKPD ITF +I +Y FD ++++ K ++ S E
Sbjct: 385 AYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMISSGE 442
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 3 KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
++R++ T Y+ +I GK G+ +F +M+ G +P+ Y +L+ A+ K
Sbjct: 298 EKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAY----SK 353
Query: 63 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
A + K +++ + + +N ++ A QA ++ + L+ ++ E PD
Sbjct: 354 AGLVVKIDSVLRQIVNSDVV-LDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKI 412
Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
T+ ++ Y +G+ ++ + +M S+ DI+
Sbjct: 413 TFATMIKTYTAHGIFDAVQELEKQMISSGENLDIL 447
>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730,
chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2
SV=2
Length = 508
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/362 (28%), Positives = 167/362 (46%), Gaps = 40/362 (11%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
+++Q WY + GIY KLI ++GK Q A LF EM N GC + VY AL++A+
Sbjct: 140 LREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAY---- 195
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
++ A ++MK C+P++ TY+IL+++ Q D+V L ++ + P+
Sbjct: 196 SRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPN 255
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPD------------------------ 155
TYN ++DAYGK M EMES L +M + CKPD
Sbjct: 256 TITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCY 315
Query: 156 -----------IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
I TFN+L+DSYGK + KM V + + T+ T+N +I +G+A
Sbjct: 316 EKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRA 375
Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
+ EY+F+ M + + PS +T ++ YG + + + + +
Sbjct: 376 GDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFF 435
Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
N +++AY E + E G PD TY+ + KAY + M V++L +E
Sbjct: 436 NCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVVES 495
Query: 325 NG 326
G
Sbjct: 496 VG 497
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 120/256 (46%), Gaps = 31/256 (12%)
Query: 33 LFSEMRNSGCRPDPSVYNALITAH---------------LHTRDKAK-------ALAKAL 70
L S+MR G RP+ YN LI A+ + D K + +A
Sbjct: 243 LLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAF 302
Query: 71 GYFQKMKGMERC---------KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
G +++ ME C +PNI T+NILL + ++ N +++A+ + + + + I
Sbjct: 303 GGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTI 362
Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
TYN V+DA+G+ G +K+ME + M+S + P +T L+ +YG+ DK+ V +
Sbjct: 363 VTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRF 422
Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
+ +S + L FN ++ YG+ + + V + M + P ITY ++ Y
Sbjct: 423 IENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGM 482
Query: 242 VSRAREIFDELSKLGK 257
+ +E+ + +G+
Sbjct: 483 TTHVKELHGVVESVGE 498
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 138/315 (43%), Gaps = 37/315 (11%)
Query: 57 LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
LH R A A+ F+ ++ KPN+ Y L+ + + ++ + LF+E+
Sbjct: 121 LHERITALRWESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEG 180
Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKM 175
+ Y ++ AY ++G ++L RMKS+ C+PD+ T+++LI S+ + AFDK+
Sbjct: 181 CVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKV 240
Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARL----------------------------- 206
+ + + +P T+N++I YGKA++
Sbjct: 241 QDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLR 300
Query: 207 ----QGKAEYV---FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
G+ E + ++K + P+ T+ ++ YG N + + + + K
Sbjct: 301 AFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSW 360
Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
+ T N +++A+ G + + LF + + P T L +AY +A+ + + +L
Sbjct: 361 TIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVL 420
Query: 320 KRMEQNGIVPNKRFF 334
+ +E + I + FF
Sbjct: 421 RFIENSDIRLDLVFF 435
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/197 (19%), Positives = 86/197 (43%), Gaps = 8/197 (4%)
Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
KP++ + LI GK + +K ++F+ +++ + +++ Y ++ G+ +
Sbjct: 147 KPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRS---GRFDA 203
Query: 213 VFQKMTAMKYT----PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
F + MK + P TY +I + + +++ ++ + G T N ++
Sbjct: 204 AFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLI 263
Query: 269 EAYCMNGLPTEAD-LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
+AY + E + L + PDS T +A+ E+++ ++ + +GI
Sbjct: 264 DAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGI 323
Query: 328 VPNKRFFLEALETFSSS 344
PN R F L+++ S
Sbjct: 324 EPNIRTFNILLDSYGKS 340
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 168/345 (48%), Gaps = 6/345 (1%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
MQ+Q W + IY+ +I+++G++G + +F EM + G Y ALI A+
Sbjct: 131 MQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAY---- 186
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAP 119
+ +L +MK E+ P+I+TYN ++ ACA+ + + + LF E+ + P
Sbjct: 187 GRNGRYETSLELLDRMKN-EKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQP 245
Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
DI TYN ++ A G+ E E V M PD+ T++ L++++GK + +K+ +
Sbjct: 246 DIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLL 305
Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
+ P + ++N ++ Y K+ +A VF +M A TP+ TY ++ ++G
Sbjct: 306 GEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQS 365
Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
R++F E+ D +T N ++E + G E LF + + PD TY
Sbjct: 366 GRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETY 425
Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
+ + A K + E +K+L+ M N IVP+ + + +E F +
Sbjct: 426 EGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQA 470
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 156/333 (46%), Gaps = 5/333 (1%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D Y+ L++ +G A +F M + G PD + Y+ L+ T K + L K
Sbjct: 246 DIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLV----ETFGKLRRLEKV 301
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
+M P+I +YN+LL A A++ ++ + +F ++ + P+ TY+ +++
Sbjct: 302 CDLLGEMASGGSL-PDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLN 360
Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
+G++G ++ + MKS+ PD T+N+LI+ +G+ F ++ +F ++ +P
Sbjct: 361 LFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEP 420
Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
+ T+ +I GK L A + Q MTA PS Y +I +G A F
Sbjct: 421 DMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAF 480
Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
+ + ++G + + T +++L ++ GL E++ + + G+ + T+ +AY +
Sbjct: 481 NTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQG 540
Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
E K ME++ P++R L +S
Sbjct: 541 GKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYS 573
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 147/323 (45%), Gaps = 5/323 (1%)
Query: 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
+ D YS L+ GK + L EM + G PD + YN L+ A+ K+ ++
Sbjct: 279 VPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYA----KSGSIK 334
Query: 68 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
+A+G F +M+ C PN TY++LL Q+ D V LF E+ S PD TYN +
Sbjct: 335 EAMGVFHQMQAA-GCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNIL 393
Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
++ +G+ G KE+ ++ M +PD+ T+ +I + GK + ++ + + +
Sbjct: 394 IEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDI 453
Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
P+ + +I +G+A L +A F M + PS T+ ++ + V +
Sbjct: 454 VPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEA 513
Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
I L G T NA +EAY G EA + + PD T + + Y+
Sbjct: 514 ILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYS 573
Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
A + + ++ + M+ + I+P+
Sbjct: 574 FARLVDECREQFEEMKASDILPS 596
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 138/275 (50%), Gaps = 1/275 (0%)
Query: 68 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
++L F+ M+ CKPN Y I++ + +D+ +F E+ ++ +++Y +
Sbjct: 123 RSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTAL 182
Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ-AFDKMEQVFKSLMHSK 186
++AYG+NG + +L RMK+ + P I+T+N +I++ + ++ + +F + H
Sbjct: 183 INAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEG 242
Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
+P + T+N+++ L +AE VF+ M P TY ++ +G + +
Sbjct: 243 IQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVC 302
Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
++ E++ G +++ N +LEAY +G EA +F G TP+++TY +L +
Sbjct: 303 DLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLF 362
Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
++ + V++L M+ + P+ + +E F
Sbjct: 363 GQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVF 397
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 143/322 (44%), Gaps = 9/322 (2%)
Query: 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKA 65
+ D Y+ L+ K G + AM +F +M+ +GC P+ + Y+ L+ + D +
Sbjct: 314 LPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQ 373
Query: 66 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
L F +MK P+ TYNIL+ + +V LF ++ E + PD+ TY
Sbjct: 374 L------FLEMKS-SNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYE 426
Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
G++ A GK G+ ++ +L M +N P + +I+++G+ +++ F ++
Sbjct: 427 GIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEV 486
Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
P++ TF+S++ ++ + L ++E + ++ + T+ I Y A
Sbjct: 487 GSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEA 546
Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
+ + ++ K D TL A+L Y L E FE + P Y ++
Sbjct: 547 VKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAV 606
Query: 306 YTKANMKELVQKLLKRMEQNGI 327
Y K + V +LL+ M N +
Sbjct: 607 YGKTERWDDVNELLEEMLSNRV 628
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/322 (22%), Positives = 131/322 (40%), Gaps = 41/322 (12%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D Y+ LI V G+ G + + LF +M PD Y +I A K A
Sbjct: 386 DAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFAC----GKGGLHEDA 441
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
Q M + P+ Y ++ A QA ++ F +HE P I T++ ++
Sbjct: 442 RKILQYMTAND-IVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLY 500
Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
++ + G++KE E++LSR+ + + TFN I++Y + F++ + + + S+ P
Sbjct: 501 SFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDP 560
Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG---YCDNVSRAR 246
T +++ Y ARL + F++M A PS + Y ++ +YG D+V+
Sbjct: 561 DERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELL 620
Query: 247 E---------------------------------IFDELSKLGKDMKVSTLNAMLEAYCM 273
E + D+L+ G + + NA+L+A
Sbjct: 621 EEMLSNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWW 680
Query: 274 NGLPTEADLLFENSHNMGVTPD 295
G A + + G+ P+
Sbjct: 681 LGQKERAARVLNEATKRGLFPE 702
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 155/342 (45%), Gaps = 11/342 (3%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D Y+ LI+ G+ R A+ +F +M GC+P YN ++ K
Sbjct: 207 DVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVF---GKMGTPWNKI 263
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
+KMK + P+ TYN L+ C + + +F+E+ + + D TYN ++D
Sbjct: 264 TSLVEKMKS-DGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLD 322
Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
YGK+ KE VL+ M N P I+T+N LI +Y + D+ ++ + KP
Sbjct: 323 VYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKP 382
Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
+ T+ +++ + +A A +F++M P+ T+ I MYG + +IF
Sbjct: 383 DVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIF 442
Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
DE++ G + T N +L + NG+ +E +F+ G P+ T+ L AY++
Sbjct: 443 DEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRC 502
Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSG 351
E + +RM G+ P+ L T+++ LA G
Sbjct: 503 GSFEQAMTVYRRMLDAGVTPD-------LSTYNTVLAALARG 537
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 164/389 (42%), Gaps = 69/389 (17%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D Y+ L++ + G+ AM +F EMRN+GC+P+ +NA I + R K + K
Sbjct: 383 DVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMY-GNRGKFTEMMKI 441
Query: 70 L--------------------------------GYFQKMKGMERCKPNIVTYNILLRACA 97
G F++MK P T+N L+ A +
Sbjct: 442 FDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV-PERETFNTLISAYS 500
Query: 98 QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
+ + +Q +++ + ++ + PD+ TYN V+ A + GM ++ E VL+ M+ +CKP+ +
Sbjct: 501 RCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNEL 560
Query: 158 TFNLLIDSYGKRQAFDKM-----------------------------------EQVFKSL 182
T+ L+ +Y + M E+ F L
Sbjct: 561 TYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSEL 620
Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
P + T NSM+ YG+ ++ KA V M +TPS TY ++ M+ +
Sbjct: 621 KERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADF 680
Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
++ EI E+ G + + N ++ AYC N +A +F N G+ PD TY
Sbjct: 681 GKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTF 740
Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNK 331
+Y +M E +++ M ++G PN+
Sbjct: 741 IGSYAADSMFEEAIGVVRYMIKHGCRPNQ 769
Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 154/329 (46%), Gaps = 6/329 (1%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D Y+ LI + + A +F EM+ +G D YNAL+ + K+ +A
Sbjct: 278 DAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVY----GKSHRPKEA 333
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
+ +M + P+IVTYN L+ A A+ +D+ L ++ E PD++TY ++
Sbjct: 334 MKVLNEMV-LNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLS 392
Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
+ + G ++ S+ M++ CKP+I TFN I YG R F +M ++F + P
Sbjct: 393 GFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSP 452
Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
+ T+N+++ +G+ + + VF++M + P T+ +I+ Y C + +A ++
Sbjct: 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVY 512
Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
+ G +ST N +L A G+ +++ + + P+ TY L AY
Sbjct: 513 RRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANG 572
Query: 310 NMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
L+ L + + +G++ + L+ L
Sbjct: 573 KEIGLMHSLAEEV-YSGVIEPRAVLLKTL 600
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 146/318 (45%), Gaps = 19/318 (5%)
Query: 3 KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
K+ ++ + ++ LI+ + G AM ++ M ++G PD S YN ++ A
Sbjct: 481 KRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAA------- 533
Query: 63 AKALAKALGYFQKMKGME-----RCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 117
LA+ + Q K + RCKPN +TY LL A A + + +++L +E++ ++
Sbjct: 534 ---LARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVI 590
Query: 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177
P ++ K ++ E E S +K PDI T N ++ YG+RQ K
Sbjct: 591 EPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANG 650
Query: 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
V + P++ T+NS++ + ++ GK+E + +++ A P I+Y +I Y
Sbjct: 651 VLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVI--YA 708
Query: 238 YCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
YC N + A IF E+ G V T N + +Y + + EA + G P+
Sbjct: 709 YCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPN 768
Query: 296 SSTYKLLYKAYTKANMKE 313
+TY + Y K N K+
Sbjct: 769 QNTYNSIVDGYCKLNRKD 786
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 124/264 (46%), Gaps = 2/264 (0%)
Query: 68 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
+A +F K K + N V I++ + V +F L E + D+Y+Y +
Sbjct: 156 RAFDWFMKQKDYQSMLDNSVV-AIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSL 214
Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-QAFDKMEQVFKSLMHSK 186
+ A+ +G +E +V +M+ + CKP +IT+N++++ +GK ++K+ + + +
Sbjct: 215 ISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDG 274
Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
P T+N++I + L +A VF++M A ++ +TY ++ +YG A
Sbjct: 275 IAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAM 334
Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
++ +E+ G + T N+++ AY +G+ EA L G PD TY L +
Sbjct: 335 KVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGF 394
Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
+A E + + M G PN
Sbjct: 395 ERAGKVESAMSIFEEMRNAGCKPN 418
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/377 (22%), Positives = 154/377 (40%), Gaps = 76/377 (20%)
Query: 2 QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 61
QK + D + + +I+++GK+G+ A +F+ ++ G D Y +LI+A ++
Sbjct: 164 QKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANS-- 221
Query: 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
R + VN +FK++ E P +
Sbjct: 222 -------------------------------------GRYREAVN-VFKKMEEDGCKPTL 243
Query: 122 YTYNGVMDAYGKNGM-IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
TYN +++ +GK G ++ S++ +MKS+ PD T+N LI + + QVF+
Sbjct: 244 ITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFE 303
Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY---G 237
+ + T+N+++ YGK+ +A V +M ++PS +TY +I+ Y G
Sbjct: 304 EMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDG 363
Query: 238 YCDN--------------------------------VSRAREIFDELSKLGKDMKVSTLN 265
D V A IF+E+ G + T N
Sbjct: 364 MLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFN 423
Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
A ++ Y G TE +F+ + G++PD T+ L + + M V + K M++
Sbjct: 424 AFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA 483
Query: 326 GIVPNKRFFLEALETFS 342
G VP + F + +S
Sbjct: 484 GFVPERETFNTLISAYS 500
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 158/333 (47%), Gaps = 15/333 (4%)
Query: 3 KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
++R AD YS +I + + G A+ LF EM G + YN+L+ K
Sbjct: 220 EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC----K 275
Query: 63 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
A + M E PN++T+N+LL + + + N L+KE+ ++P+I
Sbjct: 276 AGKWNDGALLLKDMVSRE-IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNII 334
Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
TYN +MD Y + E ++L M N+C PDI+TF LI Y + D +VF+++
Sbjct: 335 TYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNI 394
Query: 183 MHSKEKPTLPTFNSMIINY---GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
T++ ++ + GK +L AE +FQ+M + P +TY I + G C
Sbjct: 395 SKRGLVANAVTYSILVQGFCQSGKIKL---AEELFQEMVSHGVLPDVMTYG--ILLDGLC 449
Query: 240 DN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
DN + +A EIF++L K D+ + ++E C G +A LF + GV P+
Sbjct: 450 DNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVM 509
Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
TY ++ K LL++ME++G PN
Sbjct: 510 TYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 542
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 143/297 (48%), Gaps = 7/297 (2%)
Query: 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
Y DT ++ LI + +G+ A+ L M +GC+PD YN+++ + D + AL
Sbjct: 154 YEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLAL 213
Query: 67 AKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
+KM+ ER K ++ TY+ ++ + + +D +LFKE+ + + TYN
Sbjct: 214 ----DLLRKME--ERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYN 267
Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
++ K G + +L M S + P++ITFN+L+D + K + +++K ++
Sbjct: 268 SLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 327
Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
P + T+N+++ Y +A + M K +P +T+ +I Y V
Sbjct: 328 GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDG 387
Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
++F +SK G T + +++ +C +G A+ LF+ + GV PD TY +L
Sbjct: 388 MKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGIL 444
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 151/307 (49%), Gaps = 9/307 (2%)
Query: 26 QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85
+T A + ++ G PD + +N LI L K +++A+ +M C+P+
Sbjct: 138 KTCFAYSVLGKVMKLGYEPDTTTFNTLIKG-LFLEGK---VSEAVVLVDRMVE-NGCQPD 192
Query: 86 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
+VTYN ++ ++ + L +++ E + D++TY+ ++D+ ++G I S+
Sbjct: 193 VVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFK 252
Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
M++ K ++T+N L+ K ++ + K ++ + P + TFN ++ + K
Sbjct: 253 EMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEG 312
Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVST 263
+A ++++M +P+ ITY + M GYC + +S A + D + + + T
Sbjct: 313 KLQEANELYKEMITRGISPNIITYNTL--MDGYCMQNRLSEANNMLDLMVRNKCSPDIVT 370
Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
++++ YCM + +F N G+ ++ TY +L + + ++ +L ++L + M
Sbjct: 371 FTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMV 430
Query: 324 QNGIVPN 330
+G++P+
Sbjct: 431 SHGVLPD 437
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 143/331 (43%), Gaps = 5/331 (1%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
+S+ + + + Q L + ++ +G + N +I A + LG
Sbjct: 91 FSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYS-VLGKV 149
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
K+ G E P+ T+N L++ V + L + E+ PD+ TYN +++ +
Sbjct: 150 MKL-GYE---PDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICR 205
Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
+G +L +M+ K D+ T++ +IDS + D +FK + K ++ T
Sbjct: 206 SGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVT 265
Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
+NS++ KA + + M + + P+ IT+ ++ ++ + A E++ E+
Sbjct: 266 YNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMI 325
Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
G + T N +++ YCM +EA+ + + +PD T+ L K Y +
Sbjct: 326 TRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVD 385
Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
K+ + + + G+V N + ++ F S
Sbjct: 386 DGMKVFRNISKRGLVANAVTYSILVQGFCQS 416
Score = 88.2 bits (217), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 140/301 (46%), Gaps = 11/301 (3%)
Query: 5 RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTRDKA 63
R + + ++ L+ V K+G+ + A L+ EM G P+ YN L+ + + R
Sbjct: 292 REIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNR--- 348
Query: 64 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
L++A M +C P+IVT+ L++ + VD +F+ + + L + T
Sbjct: 349 --LSEANNMLDLMV-RNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVT 405
Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
Y+ ++ + ++G IK E + M S+ PD++T+ +L+D +K ++F+ L
Sbjct: 406 YSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQ 465
Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DN 241
SK + + ++I K A +F + P+ +TY +I+ G C +
Sbjct: 466 KSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS--GLCKKGS 523
Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
+S A + ++ + G T N ++ A+ +G T + L E + G + D+S+ K+
Sbjct: 524 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKM 583
Query: 302 L 302
+
Sbjct: 584 V 584
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 8/200 (4%)
Query: 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
+R +A+ YS L+ + G+ +LA LF EM + G PD Y L+ D
Sbjct: 396 KRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLC---DNG 452
Query: 64 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
K L KAL F+ ++ + IV Y ++ + V+ LF L + P++ T
Sbjct: 453 K-LEKALEIFEDLQK-SKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMT 510
Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY---GKRQAFDKMEQVFK 180
Y ++ K G + E +L +M+ + P+ T+N LI ++ G A K+ + K
Sbjct: 511 YTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMK 570
Query: 181 SLMHSKEKPTLPTFNSMIIN 200
S S + ++ M+++
Sbjct: 571 SCGFSADASSIKMVIDMLLS 590
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 158/322 (49%), Gaps = 15/322 (4%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT---RDKAKALAKAL 70
YS +I + K G A+ LF+EM G + D Y++LI + D AK L + +
Sbjct: 248 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 307
Query: 71 GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
G P++VT++ L+ + + + L+ E+ +APD TYN ++D
Sbjct: 308 G--------RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDG 359
Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
+ K + E + M S C+PDI+T+++LI+SY K + D ++F+ + P
Sbjct: 360 FCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPN 419
Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREI 248
T+N++++ + ++ A+ +FQ+M + PS +TY I + G CDN +++A EI
Sbjct: 420 TITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYG--ILLDGLCDNGELNKALEI 477
Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
F+++ K + + N ++ C +A LF + + GV PD TY ++ K
Sbjct: 478 FEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCK 537
Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
L ++M+++G P+
Sbjct: 538 KGSLSEADMLFRKMKEDGCTPD 559
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 133/306 (43%), Gaps = 48/306 (15%)
Query: 5 RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
R I D +S LI V K+G+ A L++EM G PD YN+LI K
Sbjct: 309 RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFC----KEN 364
Query: 65 ALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
L +A F M KG C+P+IVTY+IL+ + +A+ VD LF+E+ L P+
Sbjct: 365 CLHEANQMFDLMVSKG---CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTI 421
Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
TYN ++ + ++G + + + M S P ++T+ +L+D +K ++F+ +
Sbjct: 422 TYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKM 481
Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD-- 240
S+ + +N I ++G C+
Sbjct: 482 QKSRMTLGIGIYN-------------------------------------IIIHGMCNAS 504
Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
V A +F LS G V T N M+ C G +EAD+LF G TPD TY
Sbjct: 505 KVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYN 564
Query: 301 LLYKAY 306
+L +A+
Sbjct: 565 ILIRAH 570
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 135/301 (44%), Gaps = 10/301 (3%)
Query: 3 KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
KQR D S LI + KG+ A+ L M G +PD Y + L+ K
Sbjct: 170 KQR---PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPV----LNRLCK 222
Query: 63 AKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
+ A AL F+KM+ ER K ++V Y+I++ + + + D +LF E+ + D+
Sbjct: 223 SGNSALALDLFRKME--ERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADV 280
Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
TY+ ++ +G + +L M PD++TF+ LID + K + ++++
Sbjct: 281 VTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNE 340
Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
++ P T+NS+I + K +A +F M + P +TY +I Y
Sbjct: 341 MITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKR 400
Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
V +F E+S G T N ++ +C +G A LF+ + GV P TY +
Sbjct: 401 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 460
Query: 302 L 302
L
Sbjct: 461 L 461
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 120/267 (44%), Gaps = 9/267 (3%)
Query: 5 RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
R DT Y+ LI K+ A +F M + GC PD Y+ LI ++ KAK
Sbjct: 344 RGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYC----KAK 399
Query: 65 ALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
+ + F+++ KG+ PN +TYN L+ Q+ ++ LF+E+ + P +
Sbjct: 400 RVDDGMRLFREISSKGL---IPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVV 456
Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
TY ++D NG + + + +M+ ++ I +N++I D +F SL
Sbjct: 457 TYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSL 516
Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
KP + T+N MI K +A+ +F+KM TP TY +I + +
Sbjct: 517 SDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGL 576
Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLE 269
+ E+ +E+ G ST+ +++
Sbjct: 577 ISSVELIEEMKVCGFSADSSTIKMVID 603
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 148/329 (44%), Gaps = 15/329 (4%)
Query: 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA-HLHTRDKAKA 65
Y DT +S L+ +G+ A+ L M RPD + LI L R
Sbjct: 136 YEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGR----- 190
Query: 66 LAKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
+++AL +M G + P+ VTY +L ++ N LF+++ E + +
Sbjct: 191 VSEALVLIDRMVEYGFQ---PDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQ 247
Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
Y+ V+D+ K+G + S+ + M+ K D++T++ LI +D ++ + ++
Sbjct: 248 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 307
Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DN 241
P + TF+++I + K +A+ ++ +M P ITY +I G+C +
Sbjct: 308 GRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID--GFCKENC 365
Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
+ A ++FD + G + + T + ++ +YC + LF + G+ P++ TY
Sbjct: 366 LHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNT 425
Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
L + ++ ++L + M G+ P+
Sbjct: 426 LVLGFCQSGKLNAAKELFQEMVSRGVPPS 454
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/299 (20%), Positives = 125/299 (41%), Gaps = 7/299 (2%)
Query: 49 YNALITAHLHTRDKAK------ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102
Y+++ A L +++ + + A+ F+ M R P + +N L A A+ +
Sbjct: 28 YSSITEAKLSYKERLRNGIVDIKVNDAIDLFESMI-QSRPLPTPIDFNRLCSAVARTKQY 86
Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
D V K + + + D+YT +++ Y + + SVL R +PD ITF+ L
Sbjct: 87 DLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTL 146
Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
++ + + + ++ K++P L T +++I +A + +M +
Sbjct: 147 VNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGF 206
Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
P +TY ++ N + A ++F ++ + V + ++++ C +G +A
Sbjct: 207 QPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALS 266
Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
LF G+ D TY L + K+L+ M I+P+ F ++ F
Sbjct: 267 LFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVF 325
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/312 (18%), Positives = 125/312 (40%), Gaps = 5/312 (1%)
Query: 30 AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
A+ LF M S P P +N L +A T+ L G ++ G+E ++ T
Sbjct: 54 AIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKG--MELNGIEH---DMYTM 108
Query: 90 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
I++ + + + ++ + PD T++ +++ + G + E +++ RM
Sbjct: 109 TIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVE 168
Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
+ +PD++T + LI+ + + + ++ +P T+ ++ K+
Sbjct: 169 MKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSAL 228
Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269
A +F+KM S + Y +I + A +F+E+ G V T ++++
Sbjct: 229 ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIG 288
Query: 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
C +G + + + PD T+ L + K ++L M GI P
Sbjct: 289 GLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAP 348
Query: 330 NKRFFLEALETF 341
+ + ++ F
Sbjct: 349 DTITYNSLIDGF 360
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 11/160 (6%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
Y L+ + G+ A+ +F +M+ S +YN +I H A + A F
Sbjct: 458 YGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIII----HGMCNASKVDDAWSLF 513
Query: 74 QKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
+ KG+ KP++VTYN+++ + ++ + + LF+++ E PD +TYN ++ A+
Sbjct: 514 CSLSDKGV---KPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAH 570
Query: 132 -GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170
G +G+I +E ++ MK D T ++ID R+
Sbjct: 571 LGGSGLISSVE-LIEEMKVCGFSADSSTIKMVIDMLSDRR 609
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 6/145 (4%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
MQK R + GIY+ +I M + A LF + + G +PD YN +I
Sbjct: 481 MQKSRMTLG-IGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLC--- 536
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
K +L++A F+KMK + C P+ TYNIL+RA + L +E+ + D
Sbjct: 537 -KKGSLSEADMLFRKMKE-DGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSAD 594
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLS 145
T V+D + K +LS
Sbjct: 595 SSTIKMVIDMLSDRRLDKSFLDMLS 619
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/328 (27%), Positives = 162/328 (49%), Gaps = 17/328 (5%)
Query: 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---HLHTRDKAKA 65
AD IYS +I + K A+ LF+EM N G RPD Y++LI+ + D ++
Sbjct: 238 ADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 297
Query: 66 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
L+ L + PN+VT+N L+ A A+ + + LF E+ + + P+I TYN
Sbjct: 298 LSDMLE--------RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYN 349
Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-RQAFDKMEQVFKSLMH 184
+++ + + + E + + + M S C PD++T+N LI+ + K ++ D ME +F+ +
Sbjct: 350 SLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGME-LFRDMSR 408
Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--V 242
T+ ++I + +A A+ VF++M + P+ +TY ++ G C N +
Sbjct: 409 RGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLD--GLCKNGKL 466
Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
+A +F+ L K + + T N M E C G + LF + GV PD Y +
Sbjct: 467 EKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTM 526
Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
+ K +KE L +M+++G +P+
Sbjct: 527 ISGFCKKGLKEEAYTLFIKMKEDGPLPD 554
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 148/325 (45%), Gaps = 7/325 (2%)
Query: 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
Y DT ++ L+ + + + A+ L M GC+PD Y A+I L R +
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVING-LCKRGEPDL- 223
Query: 67 AKALGYFQKM-KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
AL KM KG + + ++V Y+ ++ + + R+VD LF E+ + PD++TY+
Sbjct: 224 --ALNLLNKMEKG--KIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYS 279
Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
++ G + +LS M + P+++TFN LID++ K + E++F ++
Sbjct: 280 SLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR 339
Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
P + T+NS+I + +A+ +F M + P +TY +I + V
Sbjct: 340 SIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDG 399
Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
E+F ++S+ G T ++ + A ++F+ + GV P+ TY L
Sbjct: 400 MELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDG 459
Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
K E + + ++++ + P+
Sbjct: 460 LCKNGKLEKAMVVFEYLQKSKMEPD 484
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 128/310 (41%), Gaps = 42/310 (13%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTRDKAKALAKALGY 72
++ LI K+G+ A LF EM P+ YN+LI +H R L +A
Sbjct: 313 FNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDR-----LDEAQQI 367
Query: 73 FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
F M + C P++VTYN L+ +A+ V LF+++ L + TY ++ +
Sbjct: 368 FTLMVSKD-CLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFF 426
Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
+ + V +M S+ P+I+T+N L+D K +K VF+ L SK +P +
Sbjct: 427 QASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIY 486
Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
T+N M KA GK E ++F L
Sbjct: 487 TYNIMSEGMCKA---GKVE--------------------------------DGWDLFCSL 511
Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
S G V N M+ +C GL EA LF G PDS TY L +A+ + K
Sbjct: 512 SLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDK 571
Query: 313 ELVQKLLKRM 322
+L+K M
Sbjct: 572 AASAELIKEM 581
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 147/366 (40%), Gaps = 46/366 (12%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
+SKL++ + K + L + +M G + YN +I + ALA LG
Sbjct: 68 FSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALA-ILGKM 126
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
K+ P+IVT N LL + + AL ++ E PD T+ ++ +
Sbjct: 127 MKLG----YGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQ 182
Query: 134 NGMIKEMESVLSRMKSNQCKPDIITF-----------------NLL-------------- 162
+ E +++ RM C+PD++T+ NLL
Sbjct: 183 HNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVI 242
Query: 163 ----IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI---INYGKARLQGKAEYVFQ 215
IDS K + D +F + + +P + T++S+I NYG+ A +
Sbjct: 243 YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGR---WSDASRLLS 299
Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
M K P+ +T+ +I + + A ++FDE+ + D + T N+++ +CM+
Sbjct: 300 DMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHD 359
Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335
EA +F + PD TY L + KA +L + M + G+V N +
Sbjct: 360 RLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYT 419
Query: 336 EALETF 341
+ F
Sbjct: 420 TLIHGF 425
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 100/228 (43%), Gaps = 5/228 (2%)
Query: 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
+ D Y+ LI K + M LF +M G + Y LI D A
Sbjct: 377 LPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQM 436
Query: 68 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
F++M + PNI+TYN LL + +++ +F+ L +S + PDIYTYN +
Sbjct: 437 ----VFKQMVS-DGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIM 491
Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
+ K G +++ + + KPD+I +N +I + K+ ++ +F +
Sbjct: 492 SEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGP 551
Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
P T+N++I + + + + + ++M + ++ TY + M
Sbjct: 552 LPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDM 599
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 5/163 (3%)
Query: 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
+R + +T Y+ LI + A +F +M + G P+ YN L+
Sbjct: 408 RRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLE 467
Query: 64 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
KA+ Y QK K ME P+I TYNI+ +A V+ LF L + PD+
Sbjct: 468 KAMV-VFEYLQKSK-ME---PDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIA 522
Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
YN ++ + K G+ +E ++ +MK + PD T+N LI ++
Sbjct: 523 YNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAH 565
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/279 (20%), Positives = 118/279 (42%), Gaps = 5/279 (1%)
Query: 66 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
L +A+ F +M R P+IV ++ LL A A+ + D V + +++ ++ ++YTYN
Sbjct: 46 LDEAVDLFGEMVK-SRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYN 104
Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
+++ + + ++L +M P I+T N L++ + + + ++
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 164
Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVS 243
+P TF +++ + +A + ++M P +TY +I G C
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVIN--GLCKRGEPD 222
Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
A + +++ K + V + ++++ C +A LF N G+ PD TY L
Sbjct: 223 LALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLI 282
Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
+LL M + I PN F ++ F+
Sbjct: 283 SCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFA 321
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 165/327 (50%), Gaps = 15/327 (4%)
Query: 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---HLHTRDKAKA 65
AD IY+ +I + K A+ LF+EM N G RPD Y++LI+ + D ++
Sbjct: 256 ADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 315
Query: 66 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
L+ + + PN+VT++ L+ A + + + L+ E+ + + PDI+TY+
Sbjct: 316 LSDMIE--------RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 367
Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
+++ + + + E + + M S C P+++T++ LI + K + ++ ++F+ +
Sbjct: 368 SLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQR 427
Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VS 243
T+ ++I + +AR A+ VF++M ++ P+ +TY I + G C N ++
Sbjct: 428 GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYN--ILLDGLCKNGKLA 485
Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
+A +F+ L + + + T N M+E C G + LF N GV+P+ Y +
Sbjct: 486 KAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMI 545
Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
+ + KE LLK+M+++G +PN
Sbjct: 546 SGFCRKGSKEEADSLLKKMKEDGPLPN 572
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 152/335 (45%), Gaps = 11/335 (3%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D YS I ++ Q LA+ + ++M G PD ++L+ + H+ K ++ A
Sbjct: 117 DLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHS----KRISDA 172
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
+ +M M KP+ T+ L+ + AL ++ + PD+ TY V++
Sbjct: 173 VALVDQMVEMGY-KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVN 231
Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
K G I S+L +M+ + + D++ +N +ID K + D +F + + +P
Sbjct: 232 GLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRP 291
Query: 190 TLPTFNSMI---INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
+ T++S+I NYG+ A + M K P+ +T+ +I + + A
Sbjct: 292 DVFTYSSLISCLCNYGR---WSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 348
Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
+++DE+ K D + T ++++ +CM+ EA +FE + P+ TY L K +
Sbjct: 349 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGF 408
Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
KA E +L + M Q G+V N + + F
Sbjct: 409 CKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGF 443
Score = 108 bits (269), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/363 (22%), Positives = 159/363 (43%), Gaps = 48/363 (13%)
Query: 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
Y DT ++ LI + + A+ L +M GC+PD Y ++ D +
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD----I 239
Query: 67 AKALGYFQKM-KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
AL +KM KG + + ++V YN ++ + +++D LF E+ + PD++TY+
Sbjct: 240 DLALSLLKKMEKG--KIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYS 297
Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
++ G + +LS M + P+++TF+ LID++ K + E+++ ++
Sbjct: 298 SLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 357
Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII------------ 233
P + T++S+I + +A+++F+ M + P+ +TY +I
Sbjct: 358 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEG 417
Query: 234 ---------------------TMYGY-----CDNVSRAREIFDELSKLGKDMKVSTLNAM 267
++G+ CDN A+ +F ++ +G + T N +
Sbjct: 418 MELFREMSQRGLVGNTVTYTTLIHGFFQARDCDN---AQMVFKQMVSVGVHPNILTYNIL 474
Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
L+ C NG +A ++FE + PD TY ++ + KA E +L + G+
Sbjct: 475 LDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGV 534
Query: 328 VPN 330
PN
Sbjct: 535 SPN 537
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 135/315 (42%), Gaps = 44/315 (13%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKALAKALG 71
+S LI K+G+ A L+ EM PD Y++LI +H R D+AK +
Sbjct: 331 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM----- 385
Query: 72 YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
F+ M + C PN+VTY+ L++ +A+ V++ LF+E+ + L + TY ++ +
Sbjct: 386 -FELMISKD-CFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGF 443
Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
+ + V +M S P+I+T+N+L+D K K VF+ L S +P +
Sbjct: 444 FQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDI 503
Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
T+N MI KA GK E E+F
Sbjct: 504 YTYNIMIEGMCKA---GKVE--------------------------------DGWELFCN 528
Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
LS G V N M+ +C G EAD L + G P+S TY L +A +
Sbjct: 529 LSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGD 588
Query: 312 KELVQKLLKRMEQNG 326
+E +L+K M G
Sbjct: 589 REASAELIKEMRSCG 603
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 110/260 (42%), Gaps = 4/260 (1%)
Query: 84 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
P+IV +N LL A A+ + V +L +++ ++ D+YTY+ ++ + + + +V
Sbjct: 81 PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140
Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
L++M +PDI+T + L++ Y + + ++ KP TF ++I
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200
Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKV 261
+A + +M P +TY ++ G C ++ A + ++ K + V
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVN--GLCKRGDIDLALSLLKKMEKGKIEADV 258
Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
N +++ C +A LF N G+ PD TY L +LL
Sbjct: 259 VIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSD 318
Query: 322 MEQNGIVPNKRFFLEALETF 341
M + I PN F ++ F
Sbjct: 319 MIERKINPNVVTFSALIDAF 338
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D Y+ +I M K G+ LF + G P+ YN +I+ R +K A +
Sbjct: 502 DIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGF--CRKGSKEEADS 559
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
L +KMK + PN TYN L+RA + + + L KE+ A D T
Sbjct: 560 L--LKKMKE-DGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDAST 610
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 162/327 (49%), Gaps = 15/327 (4%)
Query: 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---HLHTRDKAKA 65
A+ IYS +I + K A+ LF+EM N G RP+ Y++LI+ + D ++
Sbjct: 258 ANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRL 317
Query: 66 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
L+ + + PN+VT+N L+ A + + + L+ E+ + + PDI+TY+
Sbjct: 318 LSDMIE--------RKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 369
Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
+++ + + + E + + M S C P+++T+N LI+ + K + D+ ++F+ +
Sbjct: 370 SLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQR 429
Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VS 243
T+ ++I + +AR A+ VF++M + P+ +TY ++ G C N +
Sbjct: 430 GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLD--GLCKNGKLE 487
Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
+A +F+ L + + + T N M+E C G + LF + GV PD Y +
Sbjct: 488 KAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMI 547
Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
+ + +KE L ++M ++G +P+
Sbjct: 548 SGFCRKGLKEEADALFRKMREDGPLPD 574
Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 143/304 (47%), Gaps = 11/304 (3%)
Query: 30 AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CKPNIVT 88
A+ L +M G RPD + LI L +KA ++A+ +M ++R C+PN+VT
Sbjct: 174 AVALVDQMVEMGYRPDTITFTTLIHG-LFLHNKA---SEAVALVDRM--VQRGCQPNLVT 227
Query: 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
Y +++ + ++D L ++ + + ++ Y+ V+D+ K + ++ + M+
Sbjct: 228 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEME 287
Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
+ +P++IT++ LI + + ++ ++ K P + TFN++I + K
Sbjct: 288 NKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLV 347
Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNA 266
+AE ++ +M P TY +I + D + A+ +F+ + + KD V T N
Sbjct: 348 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM--ISKDCFPNVVTYNT 405
Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
++ +C E LF G+ ++ TY L + +A + Q + K+M +G
Sbjct: 406 LINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDG 465
Query: 327 IVPN 330
+ PN
Sbjct: 466 VHPN 469
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/323 (20%), Positives = 142/323 (43%), Gaps = 5/323 (1%)
Query: 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
Y DT ++ LI + + A+ L M GC+P+ Y ++ D +
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD----I 241
Query: 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
A KM+ + + N+V Y+ ++ + + R+ D LF E+ + P++ TY+
Sbjct: 242 DLAFNLLNKMEA-AKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSS 300
Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
++ + +LS M + P+++TFN LID++ K + E+++ ++
Sbjct: 301 LISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRS 360
Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
P + T++S+I + +A+++F+ M + P+ +TY +I + +
Sbjct: 361 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGV 420
Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
E+F E+S+ G T ++ + A ++F+ + GV P+ TY L
Sbjct: 421 ELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGL 480
Query: 307 TKANMKELVQKLLKRMEQNGIVP 329
K E + + ++++ + P
Sbjct: 481 CKNGKLEKAMVVFEYLQRSKMEP 503
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/363 (21%), Positives = 149/363 (41%), Gaps = 40/363 (11%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
++KL++ + K + L + L +M+ G + YN LI + ALA LG
Sbjct: 88 FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA-LLGKM 146
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
K+ G E P+IVT + LL + + AL ++ E PD T+ ++
Sbjct: 147 MKL-GYE---PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD-------KME---------- 176
+ E +++ RM C+P+++T+ ++++ KR D KME
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVI 262
Query: 177 ------------------QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
+F + + +P + T++S+I A + M
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMI 322
Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
K P+ +T+ +I + + A +++DE+ K D + T ++++ +CM+
Sbjct: 323 ERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 382
Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
EA +FE + P+ TY L + KA + +L + M Q G+V N + +
Sbjct: 383 EAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLI 442
Query: 339 ETF 341
F
Sbjct: 443 HGF 445
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 124/295 (42%), Gaps = 9/295 (3%)
Query: 49 YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL 108
Y ++ LH+ L A+G F M R P+I +N LL A A+ + D V +L
Sbjct: 53 YREILRNGLHSM----KLDDAIGLFGGMVK-SRPLPSIFEFNKLLSAIAKMKKFDLVISL 107
Query: 109 FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168
+++ ++ ++YTYN +++ + + I ++L +M +P I+T + L++ Y
Sbjct: 108 GEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCH 167
Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
+ + ++ +P TF ++I +A + +M P+ +T
Sbjct: 168 GKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVT 227
Query: 229 YECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
Y ++ G C ++ A + +++ + V + ++++ C +A LF
Sbjct: 228 YGVVVN--GLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTE 285
Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
N GV P+ TY L +LL M + I PN F ++ F
Sbjct: 286 MENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAF 340
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 148/318 (46%), Gaps = 6/318 (1%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
DT YS LI+ K G+ A+ LF EM+++ +P +Y L+ + K + KA
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYF----KVGKVEKA 287
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
L F++MK C P + TY L++ +A VD+ +K++ L PD+ N +M+
Sbjct: 288 LDLFEEMK-RAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMN 346
Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA-FDKMEQVFKSLMHSKEK 188
GK G ++E+ +V S M +C P ++++N +I + + +A ++ F +
Sbjct: 347 ILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVS 406
Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
P+ T++ +I Y K KA + ++M + P Y +I G A E+
Sbjct: 407 PSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANEL 466
Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
F EL + ++ M++ + G +EA LF N G PD Y L K
Sbjct: 467 FKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVK 526
Query: 309 ANMKELVQKLLKRMEQNG 326
A M LL++ME+NG
Sbjct: 527 AGMINEANSLLRKMEENG 544
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 134/315 (42%), Gaps = 5/315 (1%)
Query: 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
+ S+L+ +G+ A+ +F + + C+P S YN++I + K
Sbjct: 163 AVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHE---- 218
Query: 72 YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
+ +M C P+ +TY+ L+ + + D LF E+ ++ + P Y ++ Y
Sbjct: 219 VYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIY 278
Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
K G +++ + MK C P + T+ LI GK D+ +K ++ P +
Sbjct: 279 FKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDV 338
Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII-TMYGYCDNVSRAREIFD 250
N+++ GK + VF +M + TP+ ++Y +I ++ +VS FD
Sbjct: 339 VFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFD 398
Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
++ T + +++ YC +A LL E G P + Y L A KA
Sbjct: 399 KMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAK 458
Query: 311 MKELVQKLLKRMEQN 325
E +L K +++N
Sbjct: 459 RYEAANELFKELKEN 473
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 130/295 (44%), Gaps = 7/295 (2%)
Query: 37 MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 96
+RN+ P+V + L+ A +AK ++KAL F + KG +CKP TYN ++
Sbjct: 153 VRNTYVSVSPAVLSELVKA----LGRAKMVSKALSVFYQAKG-RKCKPTSSTYNSVILML 207
Query: 97 AQARNVDQVNALFKEL-HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
Q ++V+ ++ E+ +E PD TY+ ++ +Y K G + MK N +P
Sbjct: 208 MQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPT 267
Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
+ L+ Y K +K +F+ + + PT+ T+ +I GKA +A ++
Sbjct: 268 EKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYK 327
Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA-YCMN 274
M TP + ++ + G V +F E+ V + N +++A +
Sbjct: 328 DMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESK 387
Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
+E F+ V+P TY +L Y K N E LL+ M++ G P
Sbjct: 388 AHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPP 442
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 111/230 (48%), Gaps = 9/230 (3%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
YS LI K + A+ L EM G P P+ Y +LI A KAK A F
Sbjct: 412 YSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINA----LGKAKRYEAANELF 467
Query: 74 QKMKGMERCKPNIVT--YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
+++K N+ + Y ++++ + + + LF E+ PD+Y YN +M
Sbjct: 468 KELK---ENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGM 524
Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
K GMI E S+L +M+ N C+ DI + N++++ + + + ++F+++ HS KP
Sbjct: 525 VKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDG 584
Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
T+N+++ + A + +A + ++M + ITY I+ G D+
Sbjct: 585 VTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNVDH 634
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 127/318 (39%), Gaps = 39/318 (12%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D + L+ ++GK G+ +FSEM C P YN +I A ++ ++
Sbjct: 337 DVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVS-- 394
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
+F KMK + P+ TY+IL+ + V++ L +E+ E P Y +++
Sbjct: 395 -SWFDKMKA-DSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIN 452
Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
A GK + + +K N + ++I +GK + +F + + P
Sbjct: 453 ALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGP 512
Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
+ +N+++ KA + +A + +KM +N RA
Sbjct: 513 DVYAYNALMSGMVKAGMINEANSLLRKME---------------------ENGCRA---- 547
Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
+++ N +L + G+P A +FE + G+ PD TY L + A
Sbjct: 548 ----------DINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHA 597
Query: 310 NMKELVQKLLKRMEQNGI 327
M E ++++ M+ G
Sbjct: 598 GMFEEAARMMREMKDKGF 615
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 83/155 (53%), Gaps = 5/155 (3%)
Query: 13 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
+Y+ +I GK G+ A+ LF+EM+N G PD YNAL++ + KA + +A
Sbjct: 481 VYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMV----KAGMINEANSL 536
Query: 73 FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
+KM+ C+ +I ++NI+L A+ + +F+ + S + PD TYN ++ +
Sbjct: 537 LRKMEE-NGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFA 595
Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167
GM +E ++ MK + D IT++ ++D+ G
Sbjct: 596 HAGMFEEAARMMREMKDKGFEYDAITYSSILDAVG 630
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 71/177 (40%), Gaps = 7/177 (3%)
Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM- 220
L+ + G+ + K VF K KPT T+NS+I+ + +G+ E V + T M
Sbjct: 168 LVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQ---EGQHEKVHEVYTEMC 224
Query: 221 ---KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
P ITY +I+ Y A +FDE+ +L Y G
Sbjct: 225 NEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKV 284
Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
+A LFE G +P TY L K KA + K M ++G+ P+ F
Sbjct: 285 EKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFL 341
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 149/327 (45%), Gaps = 5/327 (1%)
Query: 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
R + D Y+ +IA + K AM + + M +G PD YN++ LH +
Sbjct: 224 DRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSI----LHGYCSS 279
Query: 64 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
+A+G+ +KM+ + +P++VTY++L+ + + +F + + L P+I T
Sbjct: 280 GQPKEAIGFLKKMRS-DGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITT 338
Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
Y ++ Y G + EM +L M N PD F++LI +Y K+ D+ VF +
Sbjct: 339 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMR 398
Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
P T+ ++I K+ A F++M +P I Y +I C+
Sbjct: 399 QQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWE 458
Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
RA E+ E+ G + N++++++C G E++ LFE +GV P+ TY L
Sbjct: 459 RAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLI 518
Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
Y A + KLL M G+ PN
Sbjct: 519 NGYCLAGKMDEAMKLLSGMVSVGLKPN 545
Score = 128 bits (322), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 152/321 (47%), Gaps = 5/321 (1%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D ++S LI K+G+ AM +FS+MR G P+ Y A+I K+ + A
Sbjct: 370 DHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILC----KSGRVEDA 425
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
+ YF++M E P + YN L+ ++ L E+ + + + +N ++D
Sbjct: 426 MLYFEQMID-EGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIID 484
Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
++ K G + E E + M KP++IT+N LI+ Y D+ ++ ++ KP
Sbjct: 485 SHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKP 544
Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
T++++I Y K A +F++M + +P ITY I+ + A+E++
Sbjct: 545 NTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 604
Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
+++ G +++ST N +L C N L +A +F+N M + ++ T+ ++ A K
Sbjct: 605 VRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKV 664
Query: 310 NMKELVQKLLKRMEQNGIVPN 330
+ + L NG+VPN
Sbjct: 665 GRNDEAKDLFVAFSSNGLVPN 685
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 138/324 (42%), Gaps = 7/324 (2%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D Y LI + G+ L + G R D + L+ + + A+
Sbjct: 86 DLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIV 145
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNAL--FKELHESILAPDIYTYNG 126
L ++ C PN+ +YNILL+ C + R+ + + L + PD+ +Y
Sbjct: 146 LRRMTELG----CIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTT 201
Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
V++ + K G + S M PD++T+N +I + K QA DK +V +++ +
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNG 261
Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
P T+NS++ Y + +A +KM + P +TY ++ AR
Sbjct: 262 VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEAR 321
Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
+IFD ++K G +++T +L+ Y G E L + G+ PD + +L AY
Sbjct: 322 KIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAY 381
Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
K + + +M Q G+ PN
Sbjct: 382 AKQGKVDQAMLVFSKMRQQGLNPN 405
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 135/299 (45%), Gaps = 17/299 (5%)
Query: 44 PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNV 102
PD Y LI A ALG K KG + + + + LL+ CA R
Sbjct: 85 PDLCTYGILIGCCCRAGRLDLGFA-ALGNVIK-KGF---RVDAIAFTPLLKGLCADKRTS 139
Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ---CKPDIITF 159
D ++ + + + E P++++YN ++ +E +L M ++ PD++++
Sbjct: 140 DAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 199
Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
+I+ + K DK + ++ P + T+NS+I KA+ KA V M
Sbjct: 200 TTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVK 259
Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL---GKDMKVSTLNAMLEAYCMNGL 276
P +TY I ++GYC + + +E L K+ G + V T + +++ C NG
Sbjct: 260 NGVMPDCMTYNSI--LHGYCSS-GQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGR 316
Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKRMEQNGIVPNKRFF 334
EA +F++ G+ P+ +TY L + Y TK + E+ LL M +NGI P+ F
Sbjct: 317 CMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEM-HGLLDLMVRNGIHPDHYVF 374
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 143/360 (39%), Gaps = 48/360 (13%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-------------LHTR 60
Y +I ++ K G+ AM F +M + G P VYN+LI L
Sbjct: 409 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 468
Query: 61 DKAKAL---------------AKALGYFQKMKGMER--CKPNIVTYNILLRACAQARNVD 103
D+ L + + + + M R KPN++TYN L+ A +D
Sbjct: 469 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMD 528
Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
+ L + L P+ TY+ +++ Y K +++ + M+S+ PDIIT+N+++
Sbjct: 529 EAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIIL 588
Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223
+ + ++++ + S + L T+N ++ K +L A +FQ + M
Sbjct: 589 QGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLK 648
Query: 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283
T+ +I A+++F S G T M E GL E D L
Sbjct: 649 LEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQL 708
Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN------GIVPNKRFFLEA 337
F + + G T DS +V++LL+R E ++ K F LEA
Sbjct: 709 FLSMEDNGCTVDSGMLNF------------IVRELLQRGEITRAGTYLSMIDEKHFSLEA 756
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 88/211 (41%), Gaps = 16/211 (7%)
Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY-G 202
++R +++ PD+ T+ +LI + D +++ + F ++
Sbjct: 75 MARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 134
Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM--- 259
R + V ++MT + P+ +Y I + G CD +R++E + L + D
Sbjct: 135 DKRTSDAMDIVLRRMTELGCIPNVFSYN--ILLKGLCDE-NRSQEALELLHMMADDRGGG 191
Query: 260 ---KVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKAYTKANMKE 313
V + ++ + G ++D + H M G+ PD TY + A KA +
Sbjct: 192 SPPDVVSYTTVINGFFKEG---DSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMD 248
Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
++L M +NG++P+ + L + SS
Sbjct: 249 KAMEVLNTMVKNGVMPDCMTYNSILHGYCSS 279
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 147/319 (46%), Gaps = 6/319 (1%)
Query: 13 IYSKLI-AVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
+Y+ I +M +KG T A+ +F M+ C+P YN +I + KA +
Sbjct: 230 VYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLY----GKASKSYMSWK 285
Query: 72 YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
+ +M+ +CKPNI TY L+ A A+ ++ +F++L E L PD+Y YN +M++Y
Sbjct: 286 LYCEMRS-HQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESY 344
Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
+ G + S M+ C+PD ++N+++D+YG+ E VF+ + PT+
Sbjct: 345 SRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTM 404
Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
+ ++ Y KAR K E + ++M+ P ++ +YG ++ +I E
Sbjct: 405 KSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAE 464
Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
+ +ST N ++ Y G + LF PD T+ AY++ +
Sbjct: 465 MENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKL 524
Query: 312 KELVQKLLKRMEQNGIVPN 330
++ + M +G P+
Sbjct: 525 YVKCLEVFEEMIDSGCAPD 543
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 138/261 (52%), Gaps = 8/261 (3%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D +Y+ L+ + G A +FS M++ GC PD + YN ++ A+ +A + A
Sbjct: 333 DVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAY----GRAGLHSDA 388
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
F++MK + P + ++ +LL A ++AR+V + A+ KE+ E+ + PD + N +++
Sbjct: 389 EAVFEEMKRL-GIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLN 447
Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
YG+ G +ME +L+ M++ C DI T+N+LI+ YGK +++E++F L +P
Sbjct: 448 LYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRP 507
Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
+ T+ S I Y + +L K VF++M P T + +++ C + + ++
Sbjct: 508 DVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSA---CSSEEQVEQVT 564
Query: 250 DELSKLGKDMKVSTLNAMLEA 270
L + K + VS+L L A
Sbjct: 565 SVLRTMHKGVTVSSLVPKLMA 585
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 134/266 (50%), Gaps = 4/266 (1%)
Query: 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
+P+++ +N+L+ A Q + +L+ +L ES P TY ++ AY G+I+ E
Sbjct: 152 QPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEV 211
Query: 143 VLSRMKSNQCKPDII---TFNLLIDSYGKRQA-FDKMEQVFKSLMHSKEKPTLPTFNSMI 198
VL M+++ P I +N I+ KR+ ++ VF+ + + KPT T+N MI
Sbjct: 212 VLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMI 271
Query: 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 258
YGKA + ++ +M + + P+ TY ++ + +A EIF++L + G +
Sbjct: 272 NLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLE 331
Query: 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKL 318
V NA++E+Y G P A +F +MG PD ++Y ++ AY +A + + +
Sbjct: 332 PDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAV 391
Query: 319 LKRMEQNGIVPNKRFFLEALETFSSS 344
+ M++ GI P + + L +S +
Sbjct: 392 FEEMKRLGIAPTMKSHMLLLSAYSKA 417
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 149/322 (46%), Gaps = 10/322 (3%)
Query: 13 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
+Y+ ++ V + G+ A L MR GC PD +N LI A L + LA L
Sbjct: 227 VYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLD 286
Query: 73 FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
+ G+ +P+ +TYN LL AC++ N+D +F+++ PD++TYN ++ YG
Sbjct: 287 MVRNSGL---RPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYG 343
Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
+ G+ E E + ++ PD +T+N L+ ++ + + +K+++V++ +
Sbjct: 344 RCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEM 403
Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMK----YTPSFITYECIITMYGYCDNVSRAREI 248
T+N++I YGK QG+ + Q MK P ITY +I G + A +
Sbjct: 404 TYNTIIHMYGK---QGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAAL 460
Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
E+ +G + T +A++ Y G EA+ F G PD+ Y ++ +
Sbjct: 461 MSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLR 520
Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
N L + M +G P+
Sbjct: 521 GNETRKAWGLYRDMISDGHTPS 542
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 161/338 (47%), Gaps = 25/338 (7%)
Query: 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSV------YNALITAHL 57
+ W+ + + + ++ V+G+ Q LA+ +F+ R +P+V YNA++ +
Sbjct: 184 RHWHSPNARMVAAILGVLGRWNQESLAVEIFT-------RAEPTVGDRVQVYNAMMGVYS 236
Query: 58 HTR--DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV--DQVNALFKELH 113
+ KA+ L A+ + +G C P+++++N L+ A ++ + + L +
Sbjct: 237 RSGKFSKAQELVDAM----RQRG---CVPDLISFNTLINARLKSGGLTPNLAVELLDMVR 289
Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
S L PD TYN ++ A ++ + V M++++C+PD+ T+N +I YG+
Sbjct: 290 NSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAA 349
Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
+ E++F L P T+NS++ + + R K + V+Q+M M + +TY II
Sbjct: 350 EAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTII 409
Query: 234 TMYGYCDNVSRAREIFDELSKL-GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV 292
MYG + A +++ ++ L G++ T ++++ EA L ++G+
Sbjct: 410 HMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGI 469
Query: 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
P TY L Y KA +E + M ++G P+
Sbjct: 470 KPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPD 507
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 155/326 (47%), Gaps = 7/326 (2%)
Query: 3 KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTRD 61
+Q D ++ L++ + G A +F+ M G P P+V + I H L
Sbjct: 779 RQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDG--PSPTVESINILLHALCVDG 836
Query: 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
+ + L + Q M G + K +I+ ++L A A+A N+ +V ++ + + P I
Sbjct: 837 RLEELYVVVEELQDM-GFKISKSSIL---LMLDAFARAGNIFEVKKIYSSMKAAGYLPTI 892
Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
Y +++ K +++ E ++S M+ K ++ +N ++ Y + + K QV++
Sbjct: 893 RLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQR 952
Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
+ + +P T+N++II Y + R + + Q+M + P TY+ +I+ +G
Sbjct: 953 IKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKC 1012
Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
+ +A ++F+EL G + S + M++ +G ++A+ L + N G+ P +T L
Sbjct: 1013 LEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHL 1072
Query: 302 LYKAYTKANMKELVQKLLKRMEQNGI 327
L +Y+ + + +K+L ++ +
Sbjct: 1073 LMVSYSSSGNPQEAEKVLSNLKDTEV 1098
Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/361 (19%), Positives = 151/361 (41%), Gaps = 33/361 (9%)
Query: 6 WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI----------TA 55
W + +Y L+ A +FS++R SGC SV +++ TA
Sbjct: 676 WCFGSSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETA 735
Query: 56 H----------------------LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 93
H + K K KA ++ R P++ T+N L+
Sbjct: 736 HQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGR-TPDLKTWNSLM 794
Query: 94 RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
A AQ ++ A+F + +P + + N ++ A +G ++E+ V+ ++ K
Sbjct: 795 SAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFK 854
Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
+ L++D++ + ++++++ S+ + PT+ + MI K + AE +
Sbjct: 855 ISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIM 914
Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
+M + + ++ MY ++ + +++ + + G + +T N ++ YC
Sbjct: 915 VSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCR 974
Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
+ P E LL + N+G+ P TYK L A+ K E ++L + + G+ ++ F
Sbjct: 975 DRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSF 1034
Query: 334 F 334
+
Sbjct: 1035 Y 1035
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 150/340 (44%), Gaps = 7/340 (2%)
Query: 6 WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA 65
++ A + +Y+ +I GK+ + A + +R SG PD +N+L++A+ +
Sbjct: 747 FHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYA----QCGC 802
Query: 66 LAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTY 124
+A F M + P + + NILL A C R ++++ + +EL + +
Sbjct: 803 YERARAIFNTMM-RDGPSPTVESINILLHALCVDGR-LEELYVVVEELQDMGFKISKSSI 860
Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
++DA+ + G I E++ + S MK+ P I + ++I+ K + E + +
Sbjct: 861 LLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEE 920
Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
+ K L +NSM+ Y K V+Q++ P TY +I MY
Sbjct: 921 ANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEE 980
Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
+ ++ LG D K+ T +++ A+ +A+ LFE + G+ D S Y + K
Sbjct: 981 GYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMK 1040
Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
+ +KLL+ M+ GI P + ++SSS
Sbjct: 1041 ISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSS 1080
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 132/308 (42%), Gaps = 37/308 (12%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA---- 65
D Y+ +I+V G+ G A LF E+ G PD YN+L+ A R+ K
Sbjct: 331 DLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVY 390
Query: 66 ---------------------------LAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
L AL ++ MKG+ P+ +TY +L+ + +
Sbjct: 391 QQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGK 450
Query: 99 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
A + AL E+ + + P + TY+ ++ Y K G +E E S M + KPD +
Sbjct: 451 ANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLA 510
Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
+++++D + K +++ ++ P+ + MI+ K + + M
Sbjct: 511 YSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDME 570
Query: 219 AM-KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
+ P I+ + + G C +++ AR++ ++ G +++ TL ++L +Y +G
Sbjct: 571 ELCGMNPLEISS---VLVKGECFDLA-ARQLKVAITN-GYELENDTLLSILGSYSSSGRH 625
Query: 278 TEADLLFE 285
+EA L E
Sbjct: 626 SEAFELLE 633
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 115/266 (43%), Gaps = 2/266 (0%)
Query: 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
K + +N +L+ + + +++ + E+ L PD TYN ++ Y ++ +E
Sbjct: 924 KVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYL 983
Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202
++ +M++ P + T+ LI ++GK++ ++ EQ+F+ L+ K +++M+
Sbjct: 984 LMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISR 1043
Query: 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262
+ KAE + Q M P+ T ++ Y N A ++ L ++
Sbjct: 1044 DSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTL 1103
Query: 263 TLNAMLEAYCMN-GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
+++++AY + + + L E G+ PD + +A + + K V LLK
Sbjct: 1104 PYSSVIDAYLRSKDYNSGIERLLEMKKE-GLEPDHRIWTCFVRAASFSKEKIEVMLLLKA 1162
Query: 322 MEQNGIVPNKRFFLEALETFSSSLAG 347
+E G R E S + G
Sbjct: 1163 LEDIGFDLPIRLLAGRPELLVSEVDG 1188
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/287 (19%), Positives = 128/287 (44%), Gaps = 9/287 (3%)
Query: 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
Y+ +Y +I ++ K + R A + SEM + + + +++N+++ + D K +
Sbjct: 888 YLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTV 947
Query: 67 AKALGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
+Q++K G+E P+ TYN L+ + R ++ L +++ L P + TY
Sbjct: 948 Q----VYQRIKETGLE---PDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTY 1000
Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
++ A+GK +++ E + + S K D ++ ++ + K E++ + + +
Sbjct: 1001 KSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKN 1060
Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
+ +PTL T + ++++Y + +AE V + + + + Y +I Y + +
Sbjct: 1061 AGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNS 1120
Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
E E+ K G + + A + E LL + ++G
Sbjct: 1121 GIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVMLLLKALEDIG 1167
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/391 (20%), Positives = 149/391 (38%), Gaps = 75/391 (19%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRN-SGCRPDPSVYNALITAHLHTRDKAKALAK 68
D Y+ +I + GK+GQ LA+ L+ +M+ SG PD Y LI + KA +
Sbjct: 401 DEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLI----DSLGKANRTVE 456
Query: 69 ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
A +M + KP + TY+ L+ A+A ++ F + S PD Y+ ++
Sbjct: 457 AAALMSEMLDVG-IKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVML 515
Query: 129 DAYGKN-------GMIKEMES-------------VLSRMKSNQCKPDIITFNLLIDSYG- 167
D + G+ ++M S +L MK N+ T + + G
Sbjct: 516 DVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELCGM 575
Query: 168 ----------KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA----EYV 213
K + FD + K + + + T S++ +Y + +A E++
Sbjct: 576 NPLEISSVLVKGECFDLAARQLKVAITNGYELENDTLLSILGSYSSSGRHSEAFELLEFL 635
Query: 214 FQKMTAMK--YTPSFITYECIIT--------------MYGYC-----------------D 240
+ + K T + I C + ++G+C +
Sbjct: 636 KEHASGSKRLITEALIVLHCKVNNLSAALDEYFADPCVHGWCFGSSTMYETLLHCCVANE 695
Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT-PDSSTY 299
+ + A ++F +L G + S +M+ YC G P A + + G S Y
Sbjct: 696 HYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSPMY 755
Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
+ +AY K + + + ++ + Q+G P+
Sbjct: 756 TDIIEAYGKQKLWQKAESVVGNLRQSGRTPD 786
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 129 bits (324), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 145/317 (45%), Gaps = 5/317 (1%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
YS L+ +GK+ M L EM G +P+ VY I + R A + +A
Sbjct: 226 YSSLMVGLGKRRDIDSVMGLLKEMETLGLKPN--VYTFTICIRVLGR--AGKINEAYEIL 281
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
++M E C P++VTY +L+ A AR +D +F+++ PD TY ++D +
Sbjct: 282 KRMDD-EGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSD 340
Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
N + ++ S M+ + PD++TF +L+D+ K F + + P L T
Sbjct: 341 NRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHT 400
Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
+N++I + A +F M ++ P+ TY I YG + A E F+++
Sbjct: 401 YNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMK 460
Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
G + NA L + G EA +F ++G+ PDS TY ++ K Y+K +
Sbjct: 461 TKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEID 520
Query: 314 LVQKLLKRMEQNGIVPN 330
KLL M +NG P+
Sbjct: 521 EAIKLLSEMMENGCEPD 537
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 150/330 (45%), Gaps = 5/330 (1%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
+ ++R DT Y + + KG + A + +MR G + YN LI H
Sbjct: 143 LMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLI----HLL 198
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
K++ +A+ +++M +E +P++ TY+ L+ + R++D V L KE+ L P+
Sbjct: 199 LKSRFCTEAMEVYRRMI-LEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPN 257
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
+YT+ + G+ G I E +L RM C PD++T+ +LID+ + D ++VF+
Sbjct: 258 VYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFE 317
Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
+ + KP T+ +++ + R + + +M + P +T+ ++
Sbjct: 318 KMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAG 377
Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
N A + D + G + T N ++ +A LF N ++GV P + TY
Sbjct: 378 NFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYI 437
Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
+ Y K+ + ++M+ GI PN
Sbjct: 438 VFIDYYGKSGDSVSALETFEKMKTKGIAPN 467
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 153/326 (46%), Gaps = 42/326 (12%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
Y+ LI + + +A +F +++++GC PD + YN L+ A+ K+ + + +
Sbjct: 788 YNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAY----GKSGKIDELFELY 843
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL-HESILAPDIYTYNGVMDAYG 132
++M E C+ N +T+NI++ +A NVD L+ +L + +P TY ++D
Sbjct: 844 KEMSTHE-CEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLS 902
Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
K+G + E + + M C+P+ +N+LI+ +GK D +FK ++ +P L
Sbjct: 903 KSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLK 962
Query: 193 TFN----------------------------------SMIIN-YGKARLQGKAEYVFQKM 217
T++ ++IIN GK+ +A +F +M
Sbjct: 963 TYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEM 1022
Query: 218 -TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
T+ TP TY +I G V A +I++E+ + G + V T NA++ Y ++G
Sbjct: 1023 KTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGK 1082
Query: 277 PTEADLLFENSHNMGVTPDSSTYKLL 302
P A +++ G +P++ TY+ L
Sbjct: 1083 PEHAYAVYQTMVTGGFSPNTGTYEQL 1108
Score = 111 bits (278), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 143/325 (44%), Gaps = 6/325 (1%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
Y+ LI + + + A+ LF M + G +P Y I + + D AL F
Sbjct: 401 YNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALET----F 456
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
+KMK + PNIV N L + A+A + +F L + L PD TYN +M Y K
Sbjct: 457 EKMK-TKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSK 515
Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
G I E +LS M N C+PD+I N LI++ K D+ ++F + K KPT+ T
Sbjct: 516 VGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVT 575
Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
+N+++ GK +A +F+ M P+ IT+ + D V+ A ++ ++
Sbjct: 576 YNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMM 635
Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
+G V T N ++ NG EA F + V PD T L KA++ E
Sbjct: 636 DMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVKASLIE 694
Query: 314 LVQKLLKRMEQNGIVPNKRFFLEAL 338
K++ N F E L
Sbjct: 695 DAYKIITNFLYNCADQPANLFWEDL 719
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 135/301 (44%), Gaps = 8/301 (2%)
Query: 34 FSE--MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI 91
FSE + N CR S+ +I K ++ A F+K +P + TYN+
Sbjct: 735 FSERLVANGICRDGDSILVPIIRYSC----KHNNVSGARTLFEKFTKDLGVQPKLPTYNL 790
Query: 92 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151
L+ +A ++ +F ++ + PD+ TYN ++DAYGK+G I E+ + M +++
Sbjct: 791 LIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHE 850
Query: 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKA 210
C+ + IT N++I K D ++ LM ++ PT T+ +I K+ +A
Sbjct: 851 CEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEA 910
Query: 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270
+ +F+ M P+ Y +I +G A +F + K G + T + +++
Sbjct: 911 KQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDC 970
Query: 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN-GIVP 329
CM G E F+ G+ PD Y L+ K++ E L M+ + GI P
Sbjct: 971 LCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITP 1030
Query: 330 N 330
+
Sbjct: 1031 D 1031
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 155/343 (45%), Gaps = 26/343 (7%)
Query: 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
+ D+ Y+ ++ K G+ A+ L SEM +GC PD V N+LI +T KA +
Sbjct: 500 VPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLI----NTLYKADRVD 555
Query: 68 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
+A F +MK M + KP +VTYN LL + + + LF+ + + P+ T+N +
Sbjct: 556 EAWKMFMRMKEM-KLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTL 614
Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
D KN + +L +M C PD+ T+N +I K K F M
Sbjct: 615 FDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQV-KEAMCFFHQMKKLV 673
Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT----PSFITYE----CIITMYGYC 239
P T +++ KA L E ++ +T Y P+ + +E I+ G
Sbjct: 674 YPDFVTLCTLLPGVVKASL---IEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGID 730
Query: 240 DNVSRA-REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN-SHNMGVTPDSS 297
+ VS + R + + + + G S L ++ C + + A LFE + ++GV P
Sbjct: 731 NAVSFSERLVANGICRDGD----SILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLP 786
Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK---RFFLEA 337
TY LL +A+M E+ Q + +++ G +P+ F L+A
Sbjct: 787 TYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDA 829
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 120/298 (40%), Gaps = 5/298 (1%)
Query: 33 LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 92
+SEM G PD + L+ A KA +A M+ + PN+ TYN L
Sbjct: 350 FWSEMEKDGHVPDVVTFTILVDALC----KAGNFGEAFDTLDVMRD-QGILPNLHTYNTL 404
Query: 93 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
+ + +D LF + + P YTY +D YGK+G +MK+
Sbjct: 405 ICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGI 464
Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
P+I+ N + S K + +Q+F L P T+N M+ Y K +A
Sbjct: 465 APNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIK 524
Query: 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
+ +M P I +I D V A ++F + ++ V T N +L
Sbjct: 525 LLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLG 584
Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
NG EA LFE G P++ T+ L+ K + L K+L +M G VP+
Sbjct: 585 KNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPD 642
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/369 (22%), Positives = 154/369 (41%), Gaps = 51/369 (13%)
Query: 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
Q+ +T ++ L + K + LA+ + +M + GC PD YN +I + K
Sbjct: 601 QKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLV----KN 656
Query: 64 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQV----------------NA 107
+ +A+ +F +MK + P+ VT LL +A ++ N
Sbjct: 657 GQVKEAMCFFHQMKKL--VYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANL 714
Query: 108 LFKELHESILA-PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK------------- 153
+++L SILA I + NG+ ++ +S+L + CK
Sbjct: 715 FWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEK 774
Query: 154 --------PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
P + T+NLLI + + + VF + + P + T+N ++ YGK+
Sbjct: 775 FTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKS- 833
Query: 206 LQGKAEYVFQ---KMTAMKYTPSFITYECIITMYGYCDNVSRAREIF-DELSKLGKDMKV 261
GK + +F+ +M+ + + IT+ +I+ NV A +++ D +S
Sbjct: 834 --GKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTA 891
Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
T +++ +G EA LFE + G P+ + Y +L + KA + L KR
Sbjct: 892 CTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKR 951
Query: 322 MEQNGIVPN 330
M + G+ P+
Sbjct: 952 MVKEGVRPD 960
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 113/266 (42%)
Query: 69 ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
+ YF+ + G T N +L A ++++ +F + + I+ D TY +
Sbjct: 101 SFSYFKSVAGNLNLVHTTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIF 160
Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
+ G +K+ L +M+ + ++N LI K + + +V++ ++ +
Sbjct: 161 KSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFR 220
Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
P+L T++S+++ GK R + ++M + P+ T+ I + G ++ A EI
Sbjct: 221 PSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEI 280
Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
+ G V T +++A C A +FE PD TY L ++
Sbjct: 281 LKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSD 340
Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
+ V++ ME++G VP+ F
Sbjct: 341 NRDLDSVKQFWSEMEKDGHVPDVVTF 366
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 163/343 (47%), Gaps = 9/343 (2%)
Query: 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
++ + IY+ +I + K A+ +F M G R D YN LI+ L +
Sbjct: 180 FVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISG-LSNSGRWTDA 238
Query: 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
A+ L K K PN++ + L+ + N+ + L+KE+ + P+++TYN
Sbjct: 239 ARLLRDMVKRK----IDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNS 294
Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
+++ + +G + + + + M S C PD++T+N LI + K + + ++F + +
Sbjct: 295 LINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQG 354
Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
T+N++I Y +A A+ VF +M +P +TY I + C+N + +
Sbjct: 355 LVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYN--ILLDCLCNNGKIEK 412
Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
A + ++L K D+ + T N +++ C EA LF + GV PD+ Y +
Sbjct: 413 ALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMIS 472
Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347
+ ++ KL +RM+++G +P++R + E L +SL+
Sbjct: 473 GLCRKGLQREADKLCRRMKEDGFMPSERIYDETLRDHYTSLSA 515
Score = 88.2 bits (217), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 136/320 (42%), Gaps = 11/320 (3%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR-DKAKALAKALGY 72
+++++ V+ K + + ++L+ +M N G D +Y+ I H R + LG
Sbjct: 82 FTRVLTVIAKMNKFDIVIYLYHKMENLGISHD--LYSFTILIHCFCRCSRLSLALALLGK 139
Query: 73 FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
K+ +P+IVT LL Q + +L + P++ YN V++
Sbjct: 140 MMKLGF----RPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLC 195
Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
KN + V M+ + D +T+N LI + ++ + ++ K P +
Sbjct: 196 KNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVI 255
Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFD 250
F ++I + K +A ++++M P+ TY +I G+C + + A+ +FD
Sbjct: 256 FFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLIN--GFCIHGCLGDAKYMFD 313
Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
+ G V T N ++ +C + + LF G+ D+ TY L Y +A
Sbjct: 314 LMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAG 373
Query: 311 MKELVQKLLKRMEQNGIVPN 330
+ QK+ RM G+ P+
Sbjct: 374 KLNVAQKVFNRMVDCGVSPD 393
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/333 (19%), Positives = 130/333 (39%), Gaps = 44/333 (13%)
Query: 41 GCRPDPSVYNALITA--HLHTRDKAK------ALAKALGYFQKMKGMERCKPNIVTYNIL 92
G P+ S+ + A H H R++ + A F +M R P+IV + +
Sbjct: 27 GNNPETSLSRSFSGASHHHHYRERLRNELHCIKFDDAFSLFCEML-QSRPIPSIVDFTRV 85
Query: 93 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152
L A+ D V L+ ++ ++ D+Y++ ++ + + + ++L +M
Sbjct: 86 LTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGF 145
Query: 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 212
+P I+T L++ + + F + + S+ P + +N++I K R A
Sbjct: 146 RPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALE 205
Query: 213 VF-----------------------------------QKMTAMKYTPSFITYECIITMYG 237
VF + M K P+ I + +I +
Sbjct: 206 VFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFV 265
Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
N+ AR ++ E+ + V T N+++ +C++G +A +F+ + G PD
Sbjct: 266 KEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVV 325
Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
TY L + K+ E KL M G+V +
Sbjct: 326 TYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGD 358
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 78/200 (39%)
Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
S+ M ++ P I+ F ++ K FD + ++ + + L +F +I +
Sbjct: 65 SLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCF 124
Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
+ A + KM + + PS +T ++ + + A + D + G V
Sbjct: 125 CRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNV 184
Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
N ++ C N A +F G+ D+ TY L + + +LL+
Sbjct: 185 VIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRD 244
Query: 322 MEQNGIVPNKRFFLEALETF 341
M + I PN FF ++TF
Sbjct: 245 MVKRKIDPNVIFFTALIDTF 264
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 128 bits (322), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 153/326 (46%), Gaps = 14/326 (4%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D Y +I + K+G+ LA+ L ++M D +YN +I K K + A
Sbjct: 214 DLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLC----KYKHMDDA 269
Query: 70 LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
F KM KG+ KP++ TYN L+ + L ++ E + PD+ +N +
Sbjct: 270 FDLFNKMETKGI---KPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNAL 326
Query: 128 MDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
+DA+ K G + E E + M KS C PD++ +N LI + K + ++ +VF+ +
Sbjct: 327 IDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRG 386
Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSR 244
T+ ++I + +AR A+ VF++M + P +TY I + G C+ NV
Sbjct: 387 LVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYN--ILLDGLCNNGNVET 444
Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
A +F+ + K + + T M+EA C G + LF + GV P+ TY +
Sbjct: 445 ALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMS 504
Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
+ + +KE L M+++G +PN
Sbjct: 505 GFCRKGLKEEADALFVEMKEDGPLPN 530
Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 132/325 (40%), Gaps = 39/325 (12%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D Y+ LI+ + G+ A L S+M PD +NALI A + K L +A
Sbjct: 284 DVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFV----KEGKLVEA 339
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
+ +M + C P++V YN L++ + + V++ +F+E+ + L + TY ++
Sbjct: 340 EKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIH 399
Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
+ + + V +M S+ PDI+T+N+L+D + VF+ + K
Sbjct: 400 GFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKL 459
Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
+ T+ +MI KA GK E ++F
Sbjct: 460 DIVTYTTMIEALCKA---GKVE--------------------------------DGWDLF 484
Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
LS G V T M+ +C GL EAD LF G P+S TY L +A +
Sbjct: 485 CSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRD 544
Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
+ +L+K M G + F
Sbjct: 545 GDEAASAELIKEMRSCGFAGDASTF 569
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 138/329 (41%), Gaps = 6/329 (1%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
+SKL++ + K + L + L +M+N G + Y+ I + ALA LG
Sbjct: 78 FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALA-ILGKM 136
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
K+ P+IVT N LL + + AL ++ E PD T+ ++ +
Sbjct: 137 MKLG----YGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQ 192
Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
+ E +++ RM C+PD++T+ +I+ KR D + + K + +
Sbjct: 193 HNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVI 252
Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
+N++I K + A +F KM P TY +I+ S A + ++
Sbjct: 253 YNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDML 312
Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLF-ENSHNMGVTPDSSTYKLLYKAYTKANMK 312
+ + + NA+++A+ G EA+ L+ E + PD Y L K + K
Sbjct: 313 EKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRV 372
Query: 313 ELVQKLLKRMEQNGIVPNKRFFLEALETF 341
E ++ + M Q G+V N + + F
Sbjct: 373 EEGMEVFREMSQRGLVGNTVTYTTLIHGF 401
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 115/278 (41%), Gaps = 5/278 (1%)
Query: 66 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
L A+G F M R P+IV ++ LL A A+ D V +L +++ ++ ++YTY+
Sbjct: 56 LDDAIGLFGDMVK-SRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 114
Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
++ + + + ++L +M P I+T N L++ + + + ++
Sbjct: 115 IFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 174
Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVS 243
+P TF +++ + +A + ++M P +TY +I G C
Sbjct: 175 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVIN--GLCKRGEPD 232
Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
A + +++ K + V N +++ C +A LF G+ PD TY L
Sbjct: 233 LALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLI 292
Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
+LL M + I P+ FF ++ F
Sbjct: 293 SCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAF 330
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/251 (19%), Positives = 97/251 (38%), Gaps = 6/251 (2%)
Query: 80 ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139
+ C+ N L R Q +D LF ++ +S P I ++ ++ A K
Sbjct: 40 DDCREN------LSRKVLQDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDL 93
Query: 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199
+ S+ +M++ ++ T+++ I+ + +R + +M P++ T NS++
Sbjct: 94 VISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLN 153
Query: 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM 259
+ +A + +M M Y P +T+ ++ + S A + + + G
Sbjct: 154 GFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQP 213
Query: 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
+ T A++ C G P A L + D Y + K + L
Sbjct: 214 DLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLF 273
Query: 320 KRMEQNGIVPN 330
+ME GI P+
Sbjct: 274 NKMETKGIKPD 284
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 128 bits (321), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 153/309 (49%), Gaps = 5/309 (1%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
+++Q + D Y+ ++ +G+ Q L EM GC+P+ YN LI H+
Sbjct: 349 LKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLI----HSY 404
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
+A L +A+ F +M+ C+P+ VTY L+ A+A +D +++ + E+ L+PD
Sbjct: 405 GRANYLKEAMNVFNQMQ-EAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPD 463
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
+TY+ +++ GK G + + M C P+++TFN++I + K + ++ ++++
Sbjct: 464 TFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYR 523
Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
+ ++ +P T++ ++ G +AE VF +M + P Y ++ ++G
Sbjct: 524 DMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAG 583
Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
NV +A + + + + G V T N++L + +EA L ++ +G+ P TY
Sbjct: 584 NVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYT 643
Query: 301 LLYKAYTKA 309
LL T A
Sbjct: 644 LLLSCCTDA 652
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 148/322 (45%), Gaps = 40/322 (12%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D Y LI + K G +AM ++ M+ +G PD Y+ +I KA L A
Sbjct: 428 DRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINC----LGKAGHLPAA 483
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
F +M G + C PN+VT+NI++ A+ARN + L++++ + PD TY+ VM+
Sbjct: 484 HRLFCEMVG-QGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVME 542
Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
G G ++E E V + M+ PD + LL+D +GK DK Q +++++ + +P
Sbjct: 543 VLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRP 602
Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM---------YGYCD 240
+PT NS++ + + +A + Q M A+ PS TY +++ G+C
Sbjct: 603 NVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNFDMGFCG 662
Query: 241 NV-------------------SRAREIFDELSKL-------GKDMKVSTLNAMLEAYCMN 274
+ +++ D +S ++ K ++A+++ +
Sbjct: 663 QLMAVSGHPAHMFLLKMPPAGPDGQKVRDHVSNFLDFMHSEDRESKRGLMDAVVDFLHKS 722
Query: 275 GLPTEADLLFENSHNMGVTPDS 296
GL EA ++E + V PD+
Sbjct: 723 GLKEEAGSVWEVAAGKNVYPDA 744
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 124/275 (45%)
Query: 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
A ALG+F +K K + TY ++ +A+ ++N L E+ P+ TYN
Sbjct: 340 ANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNR 399
Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
++ +YG+ +KE +V ++M+ C+PD +T+ LID + K D +++ + +
Sbjct: 400 LIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAG 459
Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
P T++ +I GKA A +F +M TP+ +T+ +I ++ N A
Sbjct: 460 LSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETAL 519
Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
+++ ++ G T + ++E G EA+ +F PD Y LL +
Sbjct: 520 KLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLW 579
Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
KA + + + M Q G+ PN L TF
Sbjct: 580 GKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTF 614
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/321 (19%), Positives = 124/321 (38%), Gaps = 45/321 (14%)
Query: 57 LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 116
+H+ D ++ G+ + + M + P T + C V+ V+++ +
Sbjct: 254 VHSSDDRTIISSVEGFGKPSREMMKVTPR--TAPTPRQHCNPGYVVENVSSILRRFKWGH 311
Query: 117 LAPD-IYTYNGVMDAYGKNGMIKEMES--------------------------------- 142
A + ++ + MDAY N ++K+M++
Sbjct: 312 AAEEALHNFGFRMDAYQANQVLKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGR 371
Query: 143 ---------VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
+L M + CKP+ +T+N LI SYG+ + VF + + +P T
Sbjct: 372 AKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVT 431
Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
+ ++I + KA A ++Q+M +P TY II G ++ A +F E+
Sbjct: 432 YCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMV 491
Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
G + T N M+ + A L+ + N G PD TY ++ + E
Sbjct: 492 GQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLE 551
Query: 314 LVQKLLKRMEQNGIVPNKRFF 334
+ + M++ VP++ +
Sbjct: 552 EAEGVFAEMQRKNWVPDEPVY 572
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 154/329 (46%), Gaps = 9/329 (2%)
Query: 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
Y + IY+ +I + K Q A+ L + M G PD YN+LI+ L + +
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISG-LCSSGRWSDA 240
Query: 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
+ + K P++ T+N L+ AC + V + ++E+ L PDI TY+
Sbjct: 241 TRMVSCMTK----REIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSL 296
Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
++ + E E + M S C PD++T+++LI+ Y K + + ++F +
Sbjct: 297 LIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRG 356
Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
T+ +I Y +A AE +F++M P+ ITY + ++G CDN + +
Sbjct: 357 VVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYN--VLLHGLCDNGKIEK 414
Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
A I ++ K G D + T N ++ C G +A ++ + + G+ PD TY +
Sbjct: 415 ALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMML 474
Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRF 333
K ++ L ++M+++GI+PN+ +
Sbjct: 475 GLYKKGLRREADALFRKMKEDGILPNECY 503
Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 137/313 (43%), Gaps = 9/313 (2%)
Query: 17 LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
L+ + Q LA+ +M G P + +L+ + + AL F +M
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFC----RGDRVYDALYMFDQM 177
Query: 77 KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
GM KPN+V YN ++ +++ VD L + + + PD+ TYN ++ +G
Sbjct: 178 VGMGY-KPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGR 236
Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
+ ++S M + PD+ TFN LID+ K + E+ ++ ++ P + T++
Sbjct: 237 WSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSL 296
Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSK 254
+I +AE +F M + P +TY +I GYC + V ++F E+S+
Sbjct: 297 LIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILIN--GYCKSKKVEHGMKLFCEMSQ 354
Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
G T +++ YC G A+ +F GV P+ TY +L E
Sbjct: 355 RGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEK 414
Query: 315 VQKLLKRMEQNGI 327
+L M++NG+
Sbjct: 415 ALVILADMQKNGM 427
Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 146/325 (44%), Gaps = 12/325 (3%)
Query: 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
IAD +S+L++ + K + + ++L+ +M+ G + N L+ + L+
Sbjct: 81 IAD---FSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFC----RCSQLS 133
Query: 68 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
AL + KM + +P+IVT+ LL + V +F ++ P++ YN +
Sbjct: 134 LALSFLGKMIKLGH-EPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTI 192
Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
+D K+ + +L+RM+ + PD++T+N LI + ++ + +
Sbjct: 193 IDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREI 252
Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRA 245
P + TFN++I K +AE +++M P +TY +I YG C + A
Sbjct: 253 YPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLI--YGLCMYSRLDEA 310
Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
E+F + G V T + ++ YC + LF GV ++ TY +L +
Sbjct: 311 EEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQG 370
Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
Y +A + +++ +RM G+ PN
Sbjct: 371 YCRAGKLNVAEEIFRRMVFCGVHPN 395
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 119/291 (40%), Gaps = 41/291 (14%)
Query: 79 MERCKP--NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
M +C+P +I ++ LL A ++ + D V L++++ + ++ T N +++ + +
Sbjct: 72 MVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQ 131
Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
+ S L +M +P I+TF L++ + + +F ++ KP + +N+
Sbjct: 132 LSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNT 191
Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--------------- 241
+I K++ A + +M P +TY +I+ G C +
Sbjct: 192 IIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLIS--GLCSSGRWSDATRMVSCMTK 249
Query: 242 ----------------------VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
VS A E ++E+ + D + T + ++ CM E
Sbjct: 250 REIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDE 309
Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
A+ +F + G PD TY +L Y K+ E KL M Q G+V N
Sbjct: 310 AEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRN 360
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 10/231 (4%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA-HLHT 59
M K+ Y D ++ LI K+G+ A + EM PD Y+ LI +++
Sbjct: 247 MTKREIY-PDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYS 305
Query: 60 R-DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA 118
R D+A+ + F KG C P++VTY+IL+ +++ V+ LF E+ + +
Sbjct: 306 RLDEAEEMFG----FMVSKG---CFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVV 358
Query: 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178
+ TY ++ Y + G + E + RM P+IIT+N+L+ +K +
Sbjct: 359 RNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVI 418
Query: 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
+ + + T+N +I KA A ++ + P TY
Sbjct: 419 LADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTY 469
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 84/192 (43%), Gaps = 7/192 (3%)
Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
D +F ++ + P++ F+ ++ K + Y++++M + + T
Sbjct: 62 LDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121
Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
++ + C +S A ++ KLG + + T ++L +C +A +F+ MG
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMG 181
Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSG 351
P+ Y + K+ + LL RME++GI P+ + T++S ++G S
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPD-------VVTYNSLISGLCSS 234
Query: 352 SAKTDLTRSLST 363
+D TR +S
Sbjct: 235 GRWSDATRMVSC 246
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 149/312 (47%), Gaps = 5/312 (1%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
+++Q + D Y+ ++ +G+ Q L EM GC+P+ YN LI H+
Sbjct: 354 LKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLI----HSY 409
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
+A L +A+ F +M+ CKP+ VTY L+ A+A +D +++ + L+PD
Sbjct: 410 GRANYLNEAMNVFNQMQ-EAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPD 468
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
+TY+ +++ GK G + + M C P+++T+N+++D + K + + ++++
Sbjct: 469 TFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYR 528
Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
+ ++ +P T++ ++ G +AE VF +M + P Y ++ ++G
Sbjct: 529 DMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAG 588
Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
NV +A + + + G V T N++L + EA L +N +G+ P TY
Sbjct: 589 NVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYT 648
Query: 301 LLYKAYTKANMK 312
LL T K
Sbjct: 649 LLLSCCTDGRSK 660
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 120/275 (43%)
Query: 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
ALG+F +K K + TY ++ +A+ +N L E+ P+ TYN
Sbjct: 345 GNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNR 404
Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
++ +YG+ + E +V ++M+ CKPD +T+ LID + K D +++ +
Sbjct: 405 LIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGG 464
Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
P T++ +I GKA A +F +M TP+ +TY ++ ++ N A
Sbjct: 465 LSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNAL 524
Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
+++ ++ G + T + ++E G EA+ +F PD Y LL +
Sbjct: 525 KLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLW 584
Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
KA E + + M G+ PN L TF
Sbjct: 585 GKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTF 619
>sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720
OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1
Length = 822
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 164/373 (43%), Gaps = 32/373 (8%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH---- 56
M+ Q+ Y A IY+ +I + + A LF EM+ C+PD Y+ALI AH
Sbjct: 133 MKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAG 192
Query: 57 -----------------LHTRDKAKALAKALGYFQKMK-GMERCK--------PNIVTYN 90
+R L A G + +E CK P++VT+N
Sbjct: 193 QWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHN 252
Query: 91 ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM--K 148
I+L A R + + F+ + + + PD T+N ++ K G + + + M K
Sbjct: 253 IVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREK 312
Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
+C+PD++TF ++ Y + + VF++++ KP + ++N+++ Y + G
Sbjct: 313 RAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSG 372
Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
A V + P ++Y C++ YG +A+E+F + K + V T NA++
Sbjct: 373 TALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALI 432
Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
+AY NG EA +F G+ P+ + L A +++ K V +L + GI
Sbjct: 433 DAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGIN 492
Query: 329 PNKRFFLEALETF 341
N + A+ ++
Sbjct: 493 LNTAAYNSAIGSY 505
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 165/362 (45%), Gaps = 50/362 (13%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRN--SGCRPDPSVYNALITAHLHTRDKAKALA 67
DT ++ +I + K GQ+ A+ LF+ MR + CRPD + +++ HL++
Sbjct: 282 DTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIM--HLYSVKGEIENC 339
Query: 68 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
+A+ F+ M E KPNIV+YN L+ A A ++ ++ ++ + PD+ +Y +
Sbjct: 340 RAV--FEAMVA-EGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCL 396
Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-------QAFDKMEQ--- 177
+++YG++ + + V M+ + KP+++T+N LID+YG + F +MEQ
Sbjct: 397 LNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGI 456
Query: 178 ---------VFKSLMHSKEKPTLPT----------------FNSMIINYGKARLQGKAEY 212
+ + SK+K + T +NS I +Y A KA
Sbjct: 457 KPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIA 516
Query: 213 VFQKMTAMKYTPSFITYECIIT----MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
++Q M K +T+ +I+ M Y + +S +E+ D L K++ S L
Sbjct: 517 LYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLC--- 573
Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
AY G TEA+ +F G PD Y + AY + +L ME NGI
Sbjct: 574 -AYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIE 632
Query: 329 PN 330
P+
Sbjct: 633 PD 634
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 124/275 (45%), Gaps = 6/275 (2%)
Query: 82 CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
C N + YN+++R A+ VDQ LF E+ + PD TY+ +++A+G+ G +
Sbjct: 140 CARNDI-YNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAM 198
Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
+++ M P T+N LI++ G + + +V K + + P L T N ++ Y
Sbjct: 199 NLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAY 258
Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK- 260
R KA F+ M K P T+ II S+A ++F+ + + + +
Sbjct: 259 KSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRP 318
Query: 261 -VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
V T +++ Y + G +FE G+ P+ +Y L AY M +L
Sbjct: 319 DVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVL 378
Query: 320 KRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAK 354
++QNGI+P+ + L ++ S Q G AK
Sbjct: 379 GDIKQNGIIPDVVSYTCLLNSYGRS---RQPGKAK 410
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 125/283 (44%), Gaps = 5/283 (1%)
Query: 3 KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
KQ I D Y+ L+ G+ Q A +F MR +P+ YNALI A+
Sbjct: 382 KQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAY----GS 437
Query: 63 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
LA+A+ F++M+ + KPN+V+ LL AC++++ V+ + + +
Sbjct: 438 NGFLAEAVEIFRQME-QDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTA 496
Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
YN + +Y +++ ++ M+ + K D +TF +LI + + + K +
Sbjct: 497 AYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEM 556
Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
T ++S++ Y K +AE +F +M P I Y ++ Y +
Sbjct: 557 EDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKW 616
Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
+A E+F E+ G + +A++ A+ G P+ +L +
Sbjct: 617 GKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMD 659
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/362 (26%), Positives = 162/362 (44%), Gaps = 21/362 (5%)
Query: 3 KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
K+ +AD Y+ ++ K G A F+EMR GC P+ Y ALI A+L K
Sbjct: 510 KRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYL----K 565
Query: 63 AKALAKALGYFQKMKGMERCKPNIVTYNILL----------RAC------AQARNVDQVN 106
AK ++ A F+ M E C PNIVTY+ L+ +AC +++V V+
Sbjct: 566 AKKVSYANELFETMLS-EGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVD 624
Query: 107 ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
FK+ ++ P++ TY ++D + K+ ++E +L M C+P+ I ++ LID
Sbjct: 625 MYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGL 684
Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
K D+ ++V + TL T++S+I Y K + Q A V KM P+
Sbjct: 685 CKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNV 744
Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286
+ Y +I A ++ + + G V T AM++ + M G L E
Sbjct: 745 VIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLER 804
Query: 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLA 346
+ GV P+ TY++L K ++ LL+ M+Q + + + +E F+
Sbjct: 805 MGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFI 864
Query: 347 GS 348
S
Sbjct: 865 ES 866
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 131/288 (45%), Gaps = 17/288 (5%)
Query: 68 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
KA ++M G + P+ TY+ +L A ++ LF+E+ L D+YTY +
Sbjct: 466 KAFSVIREMIG-QGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIM 524
Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
+D++ K G+I++ + M+ C P+++T+ LI +Y K + ++F++++
Sbjct: 525 VDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGC 584
Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT----------------PSFITYEC 231
P + T++++I + KA KA +F++M K P+ +TY
Sbjct: 585 LPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGA 644
Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
++ + V AR++ D +S G + +A+++ C G EA + G
Sbjct: 645 LLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHG 704
Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
TY L Y K ++L K+L +M +N PN + E ++
Sbjct: 705 FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMID 752
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 141/351 (40%), Gaps = 29/351 (8%)
Query: 2 QKQRWY--IADTGI------YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI 53
Q ++W+ + + G Y+ LI K + A LF M + GC P+ Y+ALI
Sbjct: 536 QARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALI 595
Query: 54 TAHLHTRDKAKALAKALGYFQKMKGMERC---------------KPNIVTYNILLRACAQ 98
H KA + KA F++M G + +PN+VTY LL +
Sbjct: 596 DGHC----KAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCK 651
Query: 99 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
+ V++ L + P+ Y+ ++D K G + E + V + M + + T
Sbjct: 652 SHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYT 711
Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
++ LID Y K + D +V ++ + P + + MI K +A + Q M
Sbjct: 712 YSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMME 771
Query: 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
P+ +TY +I +G + E+ + + G T +++ C NG
Sbjct: 772 EKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALD 831
Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
A L E ++ Y+ + + + K ++ L LL + Q+ P
Sbjct: 832 VAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESL--GLLDEIGQDDTAP 880
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/380 (17%), Positives = 155/380 (40%), Gaps = 43/380 (11%)
Query: 3 KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
+Q Y +Y+ L+ ++ + ++ ++R+ D V+ + + +
Sbjct: 157 RQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDD----DKEVFGEFLNVLVRKHCR 212
Query: 63 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL---------- 112
+ + AL ++K R +P+ TYN L++A +A +D + + +E+
Sbjct: 213 NGSFSIALEELGRLKDF-RFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGF 271
Query: 113 ---------------HESI-------LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150
E++ PD Y ++ + + +E L+RM++
Sbjct: 272 TLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRAT 331
Query: 151 QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210
C P+++T++ L+ ++ + ++V +M P+ FNS++ Y + A
Sbjct: 332 SCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYA 391
Query: 211 EYVFQKMTAMKYTPSFITYECII-TMYG-----YCDNVSRAREIFDELSKLGKDMKVSTL 264
+ +KM + P ++ Y +I ++ G CD + A + + E+ G + +
Sbjct: 392 YKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINV 451
Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
++ C G +A + G PD+STY + A+ EL L + M++
Sbjct: 452 SSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKR 511
Query: 325 NGIVPNKRFFLEALETFSSS 344
G+V + + +++F +
Sbjct: 512 GGLVADVYTYTIMVDSFCKA 531
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 144/337 (42%), Gaps = 25/337 (7%)
Query: 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
++ DT Y+KLI+ + + AM + MR + C P+ Y+ L+ L+
Sbjct: 298 FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNK------- 350
Query: 67 AKALGYFQK---MKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
K LG ++ M ME C P+ +N L+ A + + L K++ + P
Sbjct: 351 -KQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVV 409
Query: 124 YNGVMDAYGKN------GMIKEMESVLSRMKSNQC---KPDIITFNLLIDSYGKRQAFDK 174
YN ++ + + ++ E S M + K ++ +F + S GK ++K
Sbjct: 410 YNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGK---YEK 466
Query: 175 MEQVFKSLMHSKEKPTLPTFNSMIINY-GKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
V + ++ P T+ S ++NY A A +F++M TY ++
Sbjct: 467 AFSVIREMIGQGFIPDTSTY-SKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMV 525
Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
+ + +AR+ F+E+ ++G V T A++ AY + A+ LFE + G
Sbjct: 526 DSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCL 585
Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
P+ TY L + KA E ++ +RM + VP+
Sbjct: 586 PNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPD 622
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/323 (21%), Positives = 130/323 (40%), Gaps = 53/323 (16%)
Query: 13 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK---AKALAKA 69
+Y LI + K G+ A + +EM G Y++LI + + + +K L+K
Sbjct: 676 VYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKM 735
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
L C PN+V Y ++ + D+ L + + E P++ TY ++D
Sbjct: 736 LE--------NSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMID 787
Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD-------KMEQ----- 177
+G G I+ +L RM S P+ +T+ +LID K A D +M+Q
Sbjct: 788 GFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPT 847
Query: 178 ---------------------VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216
+ + P L + +I N KA+ A + ++
Sbjct: 848 HTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEE 907
Query: 217 M-----TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
+ T + Y+ TY +I + V A ++F E++K G ++ + ++++
Sbjct: 908 VATFSATLVDYSS---TYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGL 964
Query: 272 CMNGLPTEADLLFENSHNMGVTP 294
N +EA LL + +M V P
Sbjct: 965 FRNSKISEALLLLDFISHM-VCP 986
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 156/323 (48%), Gaps = 15/323 (4%)
Query: 13 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---HLHTRDKAKALAKA 69
IY+ +I + A+ LF+EM N G RP+ YN+LI + D ++ L+
Sbjct: 258 IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
+ + PN+VT++ L+ A + + + L+ E+ + + PDI+TY+ +++
Sbjct: 318 IE--------RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 369
Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
+ + + E + + M S C P+++T+N LI + K + D+ ++F+ +
Sbjct: 370 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVG 429
Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRARE 247
T+ ++I + +AR A+ VF++M + P +TY I + G C+N V A
Sbjct: 430 NTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYS--ILLDGLCNNGKVETALV 487
Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
+F+ L + + + T N M+E C G + LF + GV P+ TY + +
Sbjct: 488 VFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFC 547
Query: 308 KANMKELVQKLLKRMEQNGIVPN 330
+ +KE L + M++ G +P+
Sbjct: 548 RKGLKEEADALFREMKEEGPLPD 570
Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 136/311 (43%), Gaps = 44/311 (14%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKALAKALG 71
+S LI K+G+ A L+ EM PD Y++LI +H R D+AK +
Sbjct: 329 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM----- 383
Query: 72 YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
F+ M + C PN+VTYN L++ +A+ VD+ LF+E+ + L + TY ++ +
Sbjct: 384 -FELMISKD-CFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGF 441
Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
+ + V +M S+ PDI+T+++L+D + VF+ L SK +P +
Sbjct: 442 FQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDI 501
Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
T+N MI KA GK E ++F
Sbjct: 502 YTYNIMIEGMCKA---GKVE--------------------------------DGWDLFCS 526
Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
LS G V T M+ +C GL EAD LF G PDS TY L +A+ +
Sbjct: 527 LSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGD 586
Query: 312 KELVQKLLKRM 322
K +L++ M
Sbjct: 587 KAASAELIREM 597
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/324 (22%), Positives = 147/324 (45%), Gaps = 5/324 (1%)
Query: 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
Y D+ ++ LI + + + A+ L M GC+PD Y ++ D +
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGD----I 237
Query: 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
AL +KM+ + +P +V YN ++ A +NV+ LF E+ + P++ TYN
Sbjct: 238 DLALSLLKKME-QGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 296
Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
++ G + +LS M + P+++TF+ LID++ K + E+++ ++
Sbjct: 297 LIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 356
Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
P + T++S+I + +A+++F+ M + P+ +TY +I + V
Sbjct: 357 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGM 416
Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
E+F E+S+ G T ++ + A ++F+ + GV PD TY +L
Sbjct: 417 ELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGL 476
Query: 307 TKANMKELVQKLLKRMEQNGIVPN 330
E + + ++++ + P+
Sbjct: 477 CNNGKVETALVVFEYLQRSKMEPD 500
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/366 (23%), Positives = 157/366 (42%), Gaps = 46/366 (12%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
+SKL++ + K + L + L +M+N G + Y+ LI + L+ AL
Sbjct: 84 FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFC----RRSQLSLALAVL 139
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
KM + +P+IVT N LL + +L ++ E PD +T+N ++ +
Sbjct: 140 AKMMKLGY-EPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFR 198
Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD-------KMEQ--------- 177
+ E +++ RM C+PD++T+ ++++ KR D KMEQ
Sbjct: 199 HNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVI 258
Query: 178 -------------------VFKSLMHSKEKPTLPTFNSMI---INYGKARLQGKAEYVFQ 215
+F + + +P + T+NS+I NYG+ A +
Sbjct: 259 YNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGR---WSDASRLLS 315
Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
M K P+ +T+ +I + + A +++DE+ K D + T ++++ +CM+
Sbjct: 316 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 375
Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335
EA +FE + P+ TY L K + KA + +L + M Q G+V N +
Sbjct: 376 RLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYT 435
Query: 336 EALETF 341
+ F
Sbjct: 436 TLIHGF 441
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 142/303 (46%), Gaps = 9/303 (2%)
Query: 30 AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
A+ L +M G +PD +N LI H R + A AL +KG C+P++VTY
Sbjct: 170 AVSLVGQMVEMGYQPDSFTFNTLI--HGLFRHNRASEAVALVDRMVVKG---CQPDLVTY 224
Query: 90 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
I++ + ++D +L K++ + + P + YN ++DA + + ++ + M +
Sbjct: 225 GIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDN 284
Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
+P+++T+N LI + ++ ++ K P + TF+++I + K +
Sbjct: 285 KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE 344
Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAM 267
AE ++ +M P TY +I + D + A+ +F+ + + KD V T N +
Sbjct: 345 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM--ISKDCFPNVVTYNTL 402
Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
++ +C E LF G+ ++ TY L + +A + Q + K+M +G+
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGV 462
Query: 328 VPN 330
+P+
Sbjct: 463 LPD 465
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 114/260 (43%), Gaps = 4/260 (1%)
Query: 84 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
P+IV ++ LL A A+ D V +L +++ ++ ++YTY+ +++ + + + +V
Sbjct: 79 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAV 138
Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
L++M +PDI+T N L++ + + ++ +P TFN++I +
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFR 198
Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKV 261
+A + +M P +TY ++ G C ++ A + ++ + + V
Sbjct: 199 HNRASEAVALVDRMVVKGCQPDLVTYGIVVN--GLCKRGDIDLALSLLKKMEQGKIEPGV 256
Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
N +++A C +A LF N G+ P+ TY L + +LL
Sbjct: 257 VIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSD 316
Query: 322 MEQNGIVPNKRFFLEALETF 341
M + I PN F ++ F
Sbjct: 317 MIERKINPNVVTFSALIDAF 336
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 12/142 (8%)
Query: 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
+ D YS L+ + G+ A+ +F ++ S PD YN +I KA +
Sbjct: 463 LPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMC----KAGKVE 518
Query: 68 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
F + ++ KPN+VTY ++ + ++ +ALF+E+ E PD TYN +
Sbjct: 519 DGWDLFCSLS-LKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTL 577
Query: 128 MDAYGKNG-------MIKEMES 142
+ A+ ++G +I+EM S
Sbjct: 578 IRAHLRDGDKAASAELIREMRS 599
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 87/228 (38%), Gaps = 1/228 (0%)
Query: 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
D VN LF ++ +S P I ++ ++ A K + S+ +M++ ++ T+++L
Sbjct: 64 DAVN-LFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIL 122
Query: 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222
I+ + +R V +M +P + T NS++ + A + +M M Y
Sbjct: 123 INCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGY 182
Query: 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282
P T+ +I + S A + D + G + T ++ C G A
Sbjct: 183 QPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALS 242
Query: 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
L + + P Y + A L M+ GI PN
Sbjct: 243 LLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPN 290
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 155/357 (43%), Gaps = 30/357 (8%)
Query: 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA-- 65
+ DT +Y+ LI K+G R A F EM + PD Y A+I+ D +A
Sbjct: 348 LPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGK 407
Query: 66 -----LAKAL------------GYFQ--KMKGMER---------CKPNIVTYNILLRACA 97
K L GY + MK R C PN+VTY L+
Sbjct: 408 LFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC 467
Query: 98 QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
+ ++D N L E+ + L P+I+TYN +++ K+G I+E ++ ++ D +
Sbjct: 468 KEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTV 527
Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
T+ L+D+Y K DK +++ K ++ +PT+ TFN ++ + + E + M
Sbjct: 528 TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 587
Query: 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277
A P+ T+ ++ Y +N+ A I+ ++ G T +++ +C
Sbjct: 588 LAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNM 647
Query: 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
EA LF+ G + STY +L K + K +++ +M + G+ +K F
Sbjct: 648 KEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF 704
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 144/320 (45%), Gaps = 5/320 (1%)
Query: 13 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
IY +I ++ + + A FSEM G PD VY LI R +A +K +
Sbjct: 318 IYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCK-RGDIRAASK---F 373
Query: 73 FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
F +M + P+++TY ++ Q ++ + LF E+ L PD T+ +++ Y
Sbjct: 374 FYEMHSRD-ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYC 432
Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
K G +K+ V + M C P+++T+ LID K D ++ + +P +
Sbjct: 433 KAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIF 492
Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
T+NS++ K+ +A + + A +TY ++ Y + +A+EI E+
Sbjct: 493 TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEM 552
Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
G + T N ++ +C++G+ + + L G+ P+++T+ L K Y N
Sbjct: 553 LGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNL 612
Query: 313 ELVQKLLKRMEQNGIVPNKR 332
+ + K M G+ P+ +
Sbjct: 613 KAATAIYKDMCSRGVGPDGK 632
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 134/342 (39%), Gaps = 46/342 (13%)
Query: 26 QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85
+T A+ +F E G + + YN +I H + A L ++KG P+
Sbjct: 226 KTATAIIVFREFPEVGVCWNVASYNIVI--HFVCQLGRIKEAHHLLLLMELKGY---TPD 280
Query: 86 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
+++Y+ ++ + +D+V L + + L P+ Y Y ++ + + E E S
Sbjct: 281 VISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFS 340
Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE------------------ 187
M PD + + LID + KR + F MHS++
Sbjct: 341 EMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYE-MHSRDITPDVLTYTAIISGFCQI 399
Query: 188 ------------------KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
+P TF +I Y KA A V M +P+ +TY
Sbjct: 400 GDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTY 459
Query: 230 ECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287
+I G C ++ A E+ E+ K+G + T N+++ C +G EA L
Sbjct: 460 TTLID--GLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 517
Query: 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329
G+ D+ TY L AY K+ + Q++LK M G+ P
Sbjct: 518 EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQP 559
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 135/322 (41%), Gaps = 4/322 (1%)
Query: 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
+D ++ V+ G R A +F +M N G N +T ++D K A
Sbjct: 173 SDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRL--SKDCYKT-AT 229
Query: 69 ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
A+ F++ + C N+ +YNI++ Q + + + L + PD+ +Y+ V+
Sbjct: 230 AIIVFREFPEVGVCW-NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVV 288
Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
+ Y + G + ++ ++ MK KP+ + +I + + E+ F ++
Sbjct: 289 NGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGIL 348
Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
P + ++I + K A F +M + TP +TY II+ + ++ A ++
Sbjct: 349 PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKL 408
Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
F E+ G + T ++ YC G +A + + G +P+ TY L K
Sbjct: 409 FHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCK 468
Query: 309 ANMKELVQKLLKRMEQNGIVPN 330
+ +LL M + G+ PN
Sbjct: 469 EGDLDSANELLHEMWKIGLQPN 490
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 12/178 (6%)
Query: 162 LIDSYGKRQAF---DKMEQVFKSLMHS-----KEKPTLPTFNSMIINYGKARLQGKAEYV 213
LI S+ +R D Q F L+++ + F +++++G R +A V
Sbjct: 141 LISSFWERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLR---EARRV 197
Query: 214 FQKMTAMKYTPSFITYECIIT-MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272
F+KM S + +T + C + A +F E ++G V++ N ++ C
Sbjct: 198 FEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVC 257
Query: 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
G EA L G TPD +Y + Y + + V KL++ M++ G+ PN
Sbjct: 258 QLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPN 315
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 160/338 (47%), Gaps = 17/338 (5%)
Query: 3 KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
K+ I D IY+ LI +KG +AM L +EM GC D YN + LH K
Sbjct: 402 KEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTI----LHGLCK 457
Query: 63 AKALAKALGYFQKMKGMERCK-PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
K L +A F +M ER P+ T IL+ + N+ LF+++ E + D+
Sbjct: 458 RKMLGEADKLFNEMT--ERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDV 515
Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
TYN ++D +GK G I + + + M S + P I++++L+++ + + +V+
Sbjct: 516 VTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDE 575
Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC-- 239
++ KPT+ NSMI Y ++ E +KM + + P I+Y +I YG+
Sbjct: 576 MISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLI--YGFVRE 633
Query: 240 DNVSRA----REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
+N+S+A +++ +E L D V T N++L +C EA+++ GV PD
Sbjct: 634 ENMSKAFGLVKKMEEEQGGLVPD--VFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPD 691
Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333
STY + + + ++ M Q G P+ +F
Sbjct: 692 RSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDDKF 729
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 156/327 (47%), Gaps = 15/327 (4%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D+ Y L+ KKG +FS+MR+ PD ++++++ L TR + L KA
Sbjct: 339 DSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMS--LFTR--SGNLDKA 394
Query: 70 LGYFQKMK--GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
L YF +K G+ P+ V Y IL++ + + L E+ + A D+ TYN +
Sbjct: 395 LMYFNSVKEAGL---IPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTI 451
Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
+ K M+ E + + + M PD T +LID + K ++F+ + +
Sbjct: 452 LHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRI 511
Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
+ + T+N+++ +GK A+ ++ M + + P+ I+Y ++ +++ A
Sbjct: 512 RLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFR 571
Query: 248 IFDELSKLGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
++DE+ + K++K V N+M++ YC +G ++ + E + G PD +Y L
Sbjct: 572 VWDEM--ISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYG 629
Query: 306 YTKANMKELVQKLLKRM--EQNGIVPN 330
+ + L+K+M EQ G+VP+
Sbjct: 630 FVREENMSKAFGLVKKMEEEQGGLVPD 656
Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 136/308 (44%), Gaps = 13/308 (4%)
Query: 17 LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
LI + + G LA ++ E+ SG + N ++ A L K + + L Q+
Sbjct: 206 LIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNA-LCKDGKMEKVGTFLSQVQE- 263
Query: 77 KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
KG+ P+IVTYN L+ A + +++ L + +P +YTYN V++ K+G
Sbjct: 264 KGV---YPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGK 320
Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
+ + V + M + PD T+ L+ K+ + E+VF + P L F+S
Sbjct: 321 YERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSS 380
Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSK 254
M+ + ++ KA F + P + Y +I GYC +S A + +E+ +
Sbjct: 381 MMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQ--GYCRKGMISVAMNLRNEMLQ 438
Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK----AN 310
G M V T N +L C + EAD LF + PDS T +L + K N
Sbjct: 439 QGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQN 498
Query: 311 MKELVQKL 318
EL QK+
Sbjct: 499 AMELFQKM 506
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/312 (21%), Positives = 146/312 (46%), Gaps = 5/312 (1%)
Query: 15 SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
S L+ ++ + G +RL + + S C + SV++ LI ++ R K + +A +
Sbjct: 134 SCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQAR-KLREAHEAFTLLR 192
Query: 75 KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
KG +I N L+ + + V+ +++E+ S + ++YT N +++A K+
Sbjct: 193 S-KGF---TVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKD 248
Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
G ++++ + LS+++ PDI+T+N LI +Y + ++ ++ ++ P + T+
Sbjct: 249 GKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTY 308
Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
N++I K +A+ VF +M +P TY ++ +V ++F ++
Sbjct: 309 NTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRS 368
Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
+ ++M+ + +G +A + F + G+ PD+ Y +L + Y + M +
Sbjct: 369 RDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISV 428
Query: 315 VQKLLKRMEQNG 326
L M Q G
Sbjct: 429 AMNLRNEMLQQG 440
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 113/258 (43%), Gaps = 10/258 (3%)
Query: 82 CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
C N +++L+R QAR + + + F L I N ++ + + G ++
Sbjct: 161 CGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAW 220
Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK---PTLPTFNSMI 198
V + + ++ T N+++++ K KME+V L +EK P + T+N++I
Sbjct: 221 GVYQEISRSGVGINVYTLNIMVNALCKD---GKMEKVGTFLSQVQEKGVYPDIVTYNTLI 277
Query: 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLG 256
Y L +A + M ++P TY +I G C + RA+E+F E+ + G
Sbjct: 278 SAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVIN--GLCKHGKYERAKEVFAEMLRSG 335
Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316
+T ++L C G E + +F + + V PD + + +T++ +
Sbjct: 336 LSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKAL 395
Query: 317 KLLKRMEQNGIVPNKRFF 334
+++ G++P+ +
Sbjct: 396 MYFNSVKEAGLIPDNVIY 413
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 156/354 (44%), Gaps = 44/354 (12%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
Y ++ VM K GQT LAM L +M + D Y+ +I K +L A F
Sbjct: 231 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLC----KHGSLDNAFNLF 286
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
+M+ M+ NI+TYNIL+ A D L +++ + + P++ T++ ++D++ K
Sbjct: 287 NEME-MKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK 345
Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
G ++E E + M PD IT+ LID + K DK Q+ ++ P + T
Sbjct: 346 EGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRT 405
Query: 194 FNSMIINYGKAR---------------------------LQGKAEY--------VFQKMT 218
FN +I Y KA +QG E +FQ+M
Sbjct: 406 FNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMV 465
Query: 219 AMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
+ K P+ +TY+ I + G CDN +A EIF+++ K ++ + N ++ C
Sbjct: 466 SRKVPPNIVTYK--ILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASK 523
Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
+A LF + GV P TY ++ K + L ++ME++G P+
Sbjct: 524 VDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPD 577
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 146/326 (44%), Gaps = 9/326 (2%)
Query: 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
Y +T +S LI + +G+ A+ L M G +PD N L+ + +A+A+
Sbjct: 154 YEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAM 213
Query: 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
KM C+PN VTY +L ++ L +++ E + D Y+
Sbjct: 214 L----LIDKMVEYG-CQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSI 268
Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
++D K+G + ++ + M+ +IIT+N+LI + +D ++ + ++ K
Sbjct: 269 IIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRK 328
Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSR 244
P + TF+ +I ++ K +AE + ++M P ITY +I G+C +++ +
Sbjct: 329 INPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLID--GFCKENHLDK 386
Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
A ++ D + G D + T N ++ YC + LF GV D+ TY L +
Sbjct: 387 ANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQ 446
Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
+ + + ++L + M + PN
Sbjct: 447 GFCELGKLNVAKELFQEMVSRKVPPN 472
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 121/266 (45%), Gaps = 5/266 (1%)
Query: 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
R DT Y+ LI K+ A + M + GC P+ +N LI + KA
Sbjct: 361 HRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYC----KA 416
Query: 64 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
+ L F+KM + + VTYN L++ + ++ LF+E+ + P+I T
Sbjct: 417 NRIDDGLELFRKMS-LRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVT 475
Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
Y ++D NG ++ + +++ ++ + DI +N++I D +F SL
Sbjct: 476 YKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLP 535
Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
KP + T+N MI K +AE +F+KM + P TY +I + + +
Sbjct: 536 LKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDAT 595
Query: 244 RAREIFDELSKLGKDMKVSTLNAMLE 269
++ ++ +EL + G + ST+ +++
Sbjct: 596 KSVKLIEELKRCGFSVDASTIKMVID 621
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 4/176 (2%)
Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
P +I F+ L + K + +D + + K + L T + MI + + R A
Sbjct: 86 PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145
Query: 214 FQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
K+ + Y P+ IT+ +I G C VS A E+ D + ++G + T+N ++
Sbjct: 146 MGKIIKLGYEPNTITFSTLIN--GLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGL 203
Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
C++G EA LL + G P++ TY + K+ L +LL++ME+ I
Sbjct: 204 CLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNI 259
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 115/258 (44%)
Query: 84 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
P ++ ++ L A A+ + D V AL K++ +A ++YT + +++ + + + S
Sbjct: 86 PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145
Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
+ ++ +P+ ITF+ LI+ + ++ ++ KP L T N+++
Sbjct: 146 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 205
Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
+ + +A + KM P+ +TY ++ + + A E+ ++ + +
Sbjct: 206 SGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265
Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
+ +++ C +G A LF G+T + TY +L + A + KLL+ M
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 325
Query: 324 QNGIVPNKRFFLEALETF 341
+ I PN F +++F
Sbjct: 326 KRKINPNVVTFSVLIDSF 343
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/318 (20%), Positives = 135/318 (42%), Gaps = 17/318 (5%)
Query: 30 AMWLFSEMRNSGCRPDPSV--YNALITAHLHTR--DKAKALAKALGYFQKMKGMERCKPN 85
A+ LF +M +S RP P+V ++ L +A T+ D AL K + ++KG+ N
Sbjct: 72 AIDLFRDMIHS--RPLPTVIDFSRLFSAIAKTKQYDLVLALCKQM----ELKGIAH---N 122
Query: 86 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145
+ T +I++ + R + + ++ + P+ T++ +++ G + E ++
Sbjct: 123 LYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVD 182
Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
RM KPD+IT N L++ + + ++ +P T+ ++ K+
Sbjct: 183 RMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSG 242
Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVST 263
A + +KM + Y II G C + + A +F+E+ G + T
Sbjct: 243 QTALAMELLRKMEERNIKLDAVKYSIIID--GLCKHGSLDNAFNLFNEMEMKGITTNIIT 300
Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
N ++ +C G + L + + P+ T+ +L ++ K ++L K M
Sbjct: 301 YNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMI 360
Query: 324 QNGIVPNKRFFLEALETF 341
GI P+ + ++ F
Sbjct: 361 HRGIAPDTITYTSLIDGF 378
Score = 38.9 bits (89), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 5/136 (3%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D GIY+ +I M + A LF + G +P YN +I K L++A
Sbjct: 507 DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLC----KKGPLSEA 562
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
F+KM+ + P+ TYNIL+RA + + L +EL + D T V+D
Sbjct: 563 ELLFRKMEE-DGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVID 621
Query: 130 AYGKNGMIKEMESVLS 145
+ K +LS
Sbjct: 622 MLSDGRLKKSFLDMLS 637
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 156/327 (47%), Gaps = 15/327 (4%)
Query: 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---HLHTRDKAKA 65
AD IY+ +I + A+ LF+EM N G RP+ YN+LI + D ++
Sbjct: 253 ADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRL 312
Query: 66 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
L+ + + PN+VT++ L+ A + + + L+ E+ + + PDI+TY+
Sbjct: 313 LSDMIE--------RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 364
Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
+++ + + + E + + M S C P+++T+N LI + K + ++ ++F+ +
Sbjct: 365 SLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQR 424
Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVS 243
T+N++I +A A+ +F+KM + P ITY I + G C +
Sbjct: 425 GLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS--ILLDGLCKYGKLE 482
Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
+A +F+ L K + + T N M+E C G + LF + GV P+ Y +
Sbjct: 483 KALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMI 542
Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
+ + +KE L + M+++G +PN
Sbjct: 543 SGFCRKGLKEEADALFREMKEDGTLPN 569
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 140/319 (43%), Gaps = 44/319 (13%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKALAKALG 71
+S LI K+G+ A L+ EM PD Y++LI +H R D+AK +
Sbjct: 328 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM----- 382
Query: 72 YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
F+ M + C PN+VTYN L++ +A+ V++ LF+E+ + L + TYN ++
Sbjct: 383 -FELMISKD-CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 440
Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
+ G + + +M S+ PDIIT+++L+D K +K VF+ L SK +P +
Sbjct: 441 FQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDI 500
Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
T+N MI KA GK E ++F
Sbjct: 501 YTYNIMIEGMCKA---GKVE--------------------------------DGWDLFCS 525
Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
LS G V M+ +C GL EAD LF G P+S TY L +A +
Sbjct: 526 LSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGD 585
Query: 312 KELVQKLLKRMEQNGIVPN 330
K +L+K M G V +
Sbjct: 586 KAASAELIKEMRSCGFVGD 604
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/355 (22%), Positives = 152/355 (42%), Gaps = 46/355 (12%)
Query: 14 YSKLIAVMGK-----------------------------------KGQTRLAMWLFSEMR 38
++KL++ + K + Q LA+ + +M
Sbjct: 83 FNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMM 142
Query: 39 NSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98
G PD ++L+ + H K +++A+ +M ME +PN VT+N L+
Sbjct: 143 KLGYEPDIVTLSSLLNGYCH----GKRISEAVALVDQMFVMEY-QPNTVTFNTLIHGLFL 197
Query: 99 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158
+ AL + PD++TY V++ K G I S+L +M+ + + D++
Sbjct: 198 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 257
Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI---INYGKARLQGKAEYVFQ 215
+ +ID+ + + +F + + +P + T+NS+I NYG+ A +
Sbjct: 258 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGR---WSDASRLLS 314
Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
M K P+ +T+ +I + + A +++DE+ K D + T ++++ +CM+
Sbjct: 315 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 374
Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
EA +FE + P+ TY L K + KA E +L + M Q G+V N
Sbjct: 375 RLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGN 429
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 79/356 (22%), Positives = 153/356 (42%), Gaps = 48/356 (13%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
Y+ LI ++ Q LA+ + +M G PD ++L+ + H K +++A+
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCH----GKRISEAVALV 173
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
+M ME +PN VT+N L+ + AL + PD++TY V++ K
Sbjct: 174 DQMFVMEY-QPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCK 232
Query: 134 NG-------MIKEME----------------------------SVLSRMKSNQCKPDIIT 158
G ++K+ME ++ + M + +P+++T
Sbjct: 233 RGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 292
Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
+N LI + ++ ++ K P + TF+++I + K +AE ++ +M
Sbjct: 293 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 352
Query: 219 AMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMN 274
P TY +I G+C D + A+ +F+ + + KD V T N +++ +C
Sbjct: 353 KRSIDPDIFTYSSLIN--GFCMHDRLDEAKHMFELM--ISKDCFPNVVTYNTLIKGFCKA 408
Query: 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
E LF G+ ++ TY L + +A ++ QK+ K+M +G+ P+
Sbjct: 409 KRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD 464
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 110/226 (48%), Gaps = 9/226 (3%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D YS LI + A +F M + C P+ YN LI KAK + +
Sbjct: 359 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC----KAKRVEEG 414
Query: 70 LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
+ F++M +G+ N VTYN L++ QA + D +FK++ + PDI TY+ +
Sbjct: 415 MELFREMSQRGL---VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSIL 471
Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
+D K G +++ V ++ ++ +PDI T+N++I+ K + +F SL
Sbjct: 472 LDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 531
Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
KP + + +MI + + L+ +A+ +F++M P+ TY +I
Sbjct: 532 KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLI 577
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 125/282 (44%), Gaps = 13/282 (4%)
Query: 66 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
L A+ F +M R P+IV +N LL A A+ D V +L + + ++ D+Y+YN
Sbjct: 61 LDDAVDLFGEMV-QSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 119
Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY--GKR--QAFDKMEQVFKS 181
+++ + + + +VL +M +PDI+T + L++ Y GKR +A ++Q+F
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFV- 178
Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC-- 239
+ +P TFN++I +A + +M A P TY ++ G C
Sbjct: 179 ---MEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVN--GLCKR 233
Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
++ A + ++ K + V +++A C +A LF N G+ P+ TY
Sbjct: 234 GDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 293
Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
L + +LL M + I PN F ++ F
Sbjct: 294 NSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAF 335
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 141/320 (44%), Gaps = 16/320 (5%)
Query: 30 AMWLFSEMRNSGCRPDPSV--YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 87
A+ LF EM S RP PS+ +N L++A + +K L +LG ++M+ + R ++
Sbjct: 64 AVDLFGEMVQS--RPLPSIVEFNKLLSA-IAKMNKFD-LVISLG--ERMQNL-RISYDLY 116
Query: 88 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
+YNIL+ + + A+ ++ + PDI T + +++ Y I E +++ +M
Sbjct: 117 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 176
Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
+ +P+ +TFN LI + + ++ +P L T+ +++ K
Sbjct: 177 FVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDI 236
Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
A + +KM K + Y II NV+ A +F E+ G V T N++
Sbjct: 237 DLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 296
Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
+ C G ++A L + + P+ T+ L A+ K +KL M + I
Sbjct: 297 IRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 356
Query: 328 VPNKRFFLEALETFSSSLAG 347
P+ + T+SS + G
Sbjct: 357 DPD-------IFTYSSLING 369
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 5/160 (3%)
Query: 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
QR + +T Y+ LI + + G +A +F +M + G PD Y+ L+
Sbjct: 423 QRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLE 482
Query: 64 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
KAL Y QK K ME P+I TYNI++ +A V+ LF L + P++
Sbjct: 483 KALV-VFEYLQKSK-ME---PDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVII 537
Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
Y ++ + + G+ +E +++ MK + P+ T+N LI
Sbjct: 538 YTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLI 577
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 12/140 (8%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D YS L+ + K G+ A+ +F ++ S PD YN +I KA +
Sbjct: 464 DIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMC----KAGKVEDG 519
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
F + ++ KPN++ Y ++ + ++ +ALF+E+ E P+ TYN ++
Sbjct: 520 WDLFCSL-SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIR 578
Query: 130 AYGKNG-------MIKEMES 142
A ++G +IKEM S
Sbjct: 579 ARLRDGDKAASAELIKEMRS 598
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 166/343 (48%), Gaps = 15/343 (4%)
Query: 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
Y + +Y+ LI + K G+ +A+ L +EM G D YN L+T ++ + A
Sbjct: 172 YEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDA- 230
Query: 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
A+ L K P++VT+ L+ + N+D+ L+KE+ +S + P+ TYN
Sbjct: 231 ARMLRDMMK----RSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNS 286
Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
+++ +G + + + M S C P+++T+N LI + K + D+ ++F+ +
Sbjct: 287 IINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEG 346
Query: 187 EKPTLPTFNSMIINY---GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN-- 241
+ T+N++I Y GK R+ A +F M + + TP IT+ CI+ ++G C N
Sbjct: 347 FNADIFTYNTLIHGYCQVGKLRV---ALDIFCWMVSRRVTPDIITH-CIL-LHGLCVNGE 401
Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
+ A FD++ + K + + N M+ C +A LF GV PD+ TY +
Sbjct: 402 IESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTI 461
Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
+ K + +L++RM++ GI+ + LE SSS
Sbjct: 462 MILGLCKNGPRREADELIRRMKEEGIICQMNAEDDHLEEHSSS 504
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 115/277 (41%), Gaps = 1/277 (0%)
Query: 54 TAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH 113
T +H + L+ AL KM + +P+IVT+ LL + +L +
Sbjct: 110 TILIHCFCRCSRLSFALSVLGKMMKLGY-EPSIVTFGSLLHGFCLVNRIGDAFSLVILMV 168
Query: 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173
+S P++ YN ++D KNG + +L+ M+ D++T+N L+ +
Sbjct: 169 KSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWS 228
Query: 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233
++ + +M P + TF ++I + K +A+ ++++M P+ +TY II
Sbjct: 229 DAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSII 288
Query: 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293
+ A++ FD ++ G V T N ++ +C + E LF+ G
Sbjct: 289 NGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFN 348
Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
D TY L Y + + + M + P+
Sbjct: 349 ADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPD 385
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/278 (19%), Positives = 108/278 (38%), Gaps = 35/278 (12%)
Query: 84 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
P+IV + LL A A R + V +++ ++ D+Y++ ++ + + + SV
Sbjct: 69 PSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSV 128
Query: 144 LSRMKSNQCKPDIITF-----------------------------------NLLIDSYGK 168
L +M +P I+TF N LID K
Sbjct: 129 LGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCK 188
Query: 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228
+ ++ + + T+N+++ + A + + M P +T
Sbjct: 189 NGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVT 248
Query: 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288
+ +I ++ N+ A+E++ E+ + D T N+++ CM+G +A F+
Sbjct: 249 FTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMA 308
Query: 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
+ G P+ TY L + K M + KL +RM G
Sbjct: 309 SKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEG 346
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 63/156 (40%)
Query: 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231
F+ +F ++HS+ P++ F ++ R Y QKM + ++
Sbjct: 52 FEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTI 111
Query: 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291
+I + C +S A + ++ KLG + + T ++L +C+ +A L G
Sbjct: 112 LIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSG 171
Query: 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
P+ Y L K + +LL ME+ G+
Sbjct: 172 YEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGL 207
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 78/197 (39%), Gaps = 4/197 (2%)
Query: 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206
M +Q P I+ F L+ + + ++ + + + L +F +I + +
Sbjct: 62 MVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSR 121
Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTL 264
A V KM + Y PS +T+ + ++G+C + + A + + K G + V
Sbjct: 122 LSFALSVLGKMMKLGYEPSIVTFGSL--LHGFCLVNRIGDAFSLVILMVKSGYEPNVVVY 179
Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
N +++ C NG A L G+ D TY L + ++L+ M +
Sbjct: 180 NTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMK 239
Query: 325 NGIVPNKRFFLEALETF 341
I P+ F ++ F
Sbjct: 240 RSINPDVVTFTALIDVF 256
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 148/319 (46%), Gaps = 5/319 (1%)
Query: 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 71
G++ L +V+ G A+ FS+M+ P N L LH K
Sbjct: 193 GVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGL----LHRFAKLGKTDDVKR 248
Query: 72 YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
+F+ M G +P + TYNI++ + +V+ LF+E+ L PD TYN ++D +
Sbjct: 249 FFKDMIG-AGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGF 307
Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
GK G + + MK C+PD+IT+N LI+ + K + ++ + + KP +
Sbjct: 308 GKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNV 367
Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
++++++ + K + +A + M + P+ TY +I N+S A + +E
Sbjct: 368 VSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNE 427
Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
+ ++G + V T A+++ C EA+ LF GV P+ ++Y L + KA
Sbjct: 428 MLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKN 487
Query: 312 KELVQKLLKRMEQNGIVPN 330
+ +LL ++ GI P+
Sbjct: 488 MDRALELLNELKGRGIKPD 506
Score = 111 bits (278), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 84/367 (22%), Positives = 158/367 (43%), Gaps = 45/367 (12%)
Query: 3 KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
K R + DT Y+ +I GK G+ + F EM++ C PD YNALI K
Sbjct: 289 KFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFC----K 344
Query: 63 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
L L ++++MKG KPN+V+Y+ L+ A + + Q + ++ L P+ Y
Sbjct: 345 FGKLPIGLEFYREMKG-NGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEY 403
Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
TY ++DA K G + + + + M + +++T+ LID + + E++F +
Sbjct: 404 TYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKM 463
Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD-- 240
+ P L ++N++I + KA+ +A + ++ P + Y I +G C
Sbjct: 464 DTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFI--WGLCSLE 521
Query: 241 -----------------------------------NVSRAREIFDELSKLGKDMKVSTLN 265
N + + DE+ +L ++ V T
Sbjct: 522 KIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFC 581
Query: 266 AMLEAYCMNGLPTEA-DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
+++ C N L ++A D S++ G+ +++ + + K N E L ++M Q
Sbjct: 582 VLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQ 641
Query: 325 NGIVPNK 331
G+VP++
Sbjct: 642 KGLVPDR 648
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 137/314 (43%), Gaps = 5/314 (1%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
Y+ +I M K+G A LF EM+ G PD YN++I K L + +F
Sbjct: 265 YNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGF----GKVGRLDDTVCFF 320
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
++MK M C+P+++TYN L+ + + ++E+ + L P++ +Y+ ++DA+ K
Sbjct: 321 EEMKDM-CCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCK 379
Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
GM+++ M+ P+ T+ LID+ K ++ ++ + + T
Sbjct: 380 EGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVT 439
Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
+ ++I A +AE +F KM P+ +Y +I + N+ RA E+ +EL
Sbjct: 440 YTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELK 499
Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
G + + C A ++ G+ +S Y L AY K+
Sbjct: 500 GRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPT 559
Query: 314 LVQKLLKRMEQNGI 327
LL M++ I
Sbjct: 560 EGLHLLDEMKELDI 573
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 98/218 (44%), Gaps = 2/218 (0%)
Query: 115 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174
++ P ++ + GM++E S+MK + P + N L+ + K D
Sbjct: 186 NVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDD 245
Query: 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234
+++ FK ++ + +PT+ T+N MI K A +F++M P +TY +I
Sbjct: 246 VKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMID 305
Query: 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTEADLLFENSHNMGVT 293
+G + F+E+ + + V T NA++ +C G LP + E N G+
Sbjct: 306 GFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGN-GLK 364
Query: 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
P+ +Y L A+ K M + K M + G+VPN+
Sbjct: 365 PNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNE 402
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 101/249 (40%)
Query: 82 CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141
C P ++ L +++ F ++ + P + NG++ + K G +++
Sbjct: 188 CVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVK 247
Query: 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201
M +P + T+N++ID K + +F+ + P T+NSMI +
Sbjct: 248 RFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGF 307
Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261
GK F++M M P ITY +I + + E + E+ G V
Sbjct: 308 GKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNV 367
Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
+ + +++A+C G+ +A + + +G+ P+ TY L A K +L
Sbjct: 368 VSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNE 427
Query: 322 MEQNGIVPN 330
M Q G+ N
Sbjct: 428 MLQVGVEWN 436
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 115/301 (38%), Gaps = 45/301 (14%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
Y+ LI + + + A LF +M +G P+ + YNALI H KAK + +AL
Sbjct: 440 YTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALI----HGFVKAKNMDRALELL 495
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
++KG KP+++ Y + ++ + E+ E + + Y +MDAY K
Sbjct: 496 NELKG-RGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFK 554
Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS-KEKPTLP 192
+G E +L MK + ++TF +LID K + K F + + +
Sbjct: 555 SGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAA 614
Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS--------------------------- 225
F +MI K A +F++M P
Sbjct: 615 IFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKM 674
Query: 226 --------FITYECIITMYGYCDNVSRAREIFDELSKLG----KDMKVSTLNAMLEAYCM 273
+ Y ++ +C+ + +AR +E+ G + + +S L E C+
Sbjct: 675 AEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCI 734
Query: 274 N 274
+
Sbjct: 735 D 735
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 89/239 (37%), Gaps = 12/239 (5%)
Query: 131 YGKNGMIKEMESVLSRMKS----------NQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
Y N ++KEM VLS+ N C P F+ L ++ Q F
Sbjct: 159 YDANSVLKEM--VLSKADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFS 216
Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
+ + P + N ++ + K + F+ M P+ TY +I
Sbjct: 217 KMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEG 276
Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
+V AR +F+E+ G T N+M++ + G + FE +M PD TY
Sbjct: 277 DVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYN 336
Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTR 359
L + K + + + M+ NG+ PN + ++ F Q+ D+ R
Sbjct: 337 ALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRR 395
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 4/155 (2%)
Query: 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
A++ IY+ L+ K G + L EM+ + LI K K ++K
Sbjct: 540 ANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLC----KNKLVSK 595
Query: 69 ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
A+ YF ++ + N + ++ + V+ LF+++ + L PD Y +M
Sbjct: 596 AVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLM 655
Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
D K G + E ++ +M K D++ + L+
Sbjct: 656 DGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLV 690
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 128/247 (51%)
Query: 84 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
P++ YN++LR +A+ D + LF E+ + LAPD YTY+ ++ ++GK GM S
Sbjct: 153 PSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSW 212
Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
L +M+ ++ D++ ++ LI+ + + K +F L S P L +NSMI YGK
Sbjct: 213 LQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGK 272
Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
A+L +A + ++M P+ ++Y ++++Y A +F E+ ++ + ++T
Sbjct: 273 AKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTT 332
Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
N M++ Y + EAD LF + M + P+ +Y + + Y +A + L + M+
Sbjct: 333 CNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQ 392
Query: 324 QNGIVPN 330
+ I N
Sbjct: 393 RKDIEQN 399
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 155/329 (47%), Gaps = 5/329 (1%)
Query: 3 KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
+QR D YS LI GK+G A+ +M D +Y+ LI D
Sbjct: 182 RQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDY 241
Query: 63 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
+KA++ F ++K P++V YN ++ +A+ + L KE++E+ + P+
Sbjct: 242 SKAIS----IFSRLKR-SGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTV 296
Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
+Y+ ++ Y +N E SV + MK C D+ T N++ID YG+ + +++F SL
Sbjct: 297 SYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSL 356
Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
+P + ++N+++ YG+A L G+A ++F+ M + +TY +I +YG
Sbjct: 357 RKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEH 416
Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
+A + E+ G + T + ++ + G A LF+ + GV D Y+ +
Sbjct: 417 EKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTM 476
Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPNK 331
AY + + ++LL ++ +P +
Sbjct: 477 IVAYERVGLMGHAKRLLHELKLPDNIPRE 505
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 141/297 (47%), Gaps = 5/297 (1%)
Query: 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 68
D +YS LI + + A+ +FS ++ SG PD YN++I + KAK +
Sbjct: 223 GDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVY----GKAKLFRE 278
Query: 69 ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
A ++M PN V+Y+ LL + + ++F E+ E A D+ T N ++
Sbjct: 279 ARLLIKEMNEAG-VLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMI 337
Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
D YG+ M+KE + + ++ +P+++++N ++ YG+ + F + +F+ + +
Sbjct: 338 DVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIE 397
Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
+ T+N+MI YGK KA + Q+M + P+ ITY II+++G + RA +
Sbjct: 398 QNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATL 457
Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
F +L G ++ M+ AY GL A L P + +L KA
Sbjct: 458 FQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKA 514
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 151/336 (44%), Gaps = 9/336 (2%)
Query: 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
+ +T YS L++V + + A+ +F+EM+ C D + N +I + + +
Sbjct: 292 LPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVY----GQLDMVK 347
Query: 68 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
+A F ++ M+ +PN+V+YN +LR +A + LF+ + + ++ TYN +
Sbjct: 348 EADRLFWSLRKMD-IEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTM 406
Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
+ YGK ++ +++ M+S +P+ IT++ +I +GK D+ +F+ L S
Sbjct: 407 IKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGV 466
Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
+ + +MI+ Y + L G A+ + ++ P I E IT+ A
Sbjct: 467 EIDQVLYQTMIVAYERVGLMGHAKRLLHELK----LPDNIPRETAITILAKAGRTEEATW 522
Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307
+F + + G+ +S M+ Y N +FE G PDS+ ++ AY
Sbjct: 523 VFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYG 582
Query: 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
K E + + M++ G V + L +SS
Sbjct: 583 KQREFEKADTVYREMQEEGCVFPDEVHFQMLSLYSS 618
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 19/174 (10%)
Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
+K P++ +N ++ N +A+ A +F +M P TY +IT +G
Sbjct: 149 AKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDS 208
Query: 245 AREIFD--ELSKLGKDMKV-STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
A E ++ D+ + S L + C ++A +F G+TPD Y
Sbjct: 209 ALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDY---SKAISIFSRLKRSGITPDLVAYNS 265
Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN-------------KRFFLEALETFS 342
+ Y KA + + L+K M + G++PN FLEAL F+
Sbjct: 266 MINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFA 319
>sp|Q9FRS4|PPR22_ARATH Pentatricopeptide repeat-containing protein At1g08610
OS=Arabidopsis thaliana GN=At1g08610 PE=2 SV=1
Length = 559
Score = 122 bits (305), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 152/323 (47%), Gaps = 13/323 (4%)
Query: 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
+ DT Y+ +I + KKG R A+ L +M SG PD YN +I + +A+
Sbjct: 171 VPDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPDVITYNTVIRCMFDYGNAEQAIR 230
Query: 68 KALGYFQKMKGMERCKPNIVTYNILL----RACAQARNVDQVNALFKELHESILAPDIYT 123
F K + C P ++TY +L+ R C AR ++ + +++ PDI T
Sbjct: 231 -----FWKDQLQNGCPPFMITYTVLVELVCRYCGSARAIE----VLEDMAVEGCYPDIVT 281
Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
YN +++ + G ++E+ SV+ + S+ + + +T+N L+ S + +D++E++ +
Sbjct: 282 YNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCSHEYWDEVEEILNIMY 341
Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
+ PT+ T+N +I KARL +A F +M K P +TY ++ V
Sbjct: 342 QTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMSKEGMVD 401
Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
A E+ L + T N++++ GL +A L+ + G+ PD T + L
Sbjct: 402 DAIELLGLLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPDDITRRSLI 461
Query: 304 KAYTKANMKELVQKLLKRMEQNG 326
+ +AN+ E ++LK G
Sbjct: 462 YGFCRANLVEEAGQVLKETSNRG 484
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 133/300 (44%), Gaps = 9/300 (3%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
Y+ L+ ++ + + A+ + +M GC PD YN+L+ + R + +A + +
Sbjct: 247 YTVLVELVCRYCGSARAIEVLEDMAVEGCYPDIVTYNSLVNYNCR-RGNLEEVASVIQHI 305
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
G+E N VTYN LL + D+V + ++++ P + TYN +++ K
Sbjct: 306 LS-HGLEL---NTVTYNTLLHSLCSHEYWDEVEEILNIMYQTSYCPTVITYNILINGLCK 361
Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
++ +M +C PDI+T+N ++ + K D ++ L ++ P L T
Sbjct: 362 ARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMSKEGMVDDAIELLGLLKNTCCPPGLIT 421
Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDE 251
+NS+I K L KA ++ +M P IT +I YG+C + V A ++ E
Sbjct: 422 YNSVIDGLAKKGLMKKALELYHQMLDAGIFPDDITRRSLI--YGFCRANLVEEAGQVLKE 479
Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
S G ++ ST +++ C A + E G PD + Y + K + M
Sbjct: 480 TSNRGNGIRGSTYRLVIQGLCKKKEIEMAIEVVEIMLTGGCKPDETIYTAIVKGVEEMGM 539
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/247 (18%), Positives = 97/247 (39%)
Query: 84 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
P+ + + L+R A+ +D+ + + + S PD TYN ++ K G I+ +
Sbjct: 137 PHFPSCSNLVRGLARIDQLDKAMCILRVMVMSGGVPDTITYNMIIGNLCKKGHIRTALVL 196
Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
L M + PD+IT+N +I ++ + +K + + P + T+ ++ +
Sbjct: 197 LEDMSLSGSPPDVITYNTVIRCMFDYGNAEQAIRFWKDQLQNGCPPFMITYTVLVELVCR 256
Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
+A V + M P +TY ++ N+ + + G ++ T
Sbjct: 257 YCGSARAIEVLEDMAVEGCYPDIVTYNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVT 316
Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
N +L + C + E + + + P TY +L KA + +M
Sbjct: 317 YNTLLHSLCSHEYWDEVEEILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQML 376
Query: 324 QNGIVPN 330
+ +P+
Sbjct: 377 EQKCLPD 383
Score = 39.7 bits (91), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 9/150 (6%)
Query: 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
+ D Y+ ++ M K+G A+ L ++N+ C P YN++I K +
Sbjct: 381 LPDIVTYNTVLGAMSKEGMVDDAIELLGLLKNTCCPPGLITYNSVIDG----LAKKGLMK 436
Query: 68 KALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
KAL + +M G+ P+ +T L+ +A V++ + KE TY
Sbjct: 437 KALELYHQMLDAGI---FPDDITRRSLIYGFCRANLVEEAGQVLKETSNRGNGIRGSTYR 493
Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
V+ K I+ V+ M + CKPD
Sbjct: 494 LVIQGLCKKKEIEMAIEVVEIMLTGGCKPD 523
Score = 39.3 bits (90), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 86/225 (38%), Gaps = 2/225 (0%)
Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
D T N ++ NG + + ++ M + P + + L+ + DK +
Sbjct: 103 DEETNNEILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLDKAMCIL 162
Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII-TMYGY 238
+ ++ S P T+N +I N K A + + M+ P ITY +I M+ Y
Sbjct: 163 RVMVMSGGVPDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPDVITYNTVIRCMFDY 222
Query: 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298
N +A + + + G + T ++E C A + E+ G PD T
Sbjct: 223 -GNAEQAIRFWKDQLQNGCPPFMITYTVLVELVCRYCGSARAIEVLEDMAVEGCYPDIVT 281
Query: 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343
Y L + E V +++ + +G+ N + L + S
Sbjct: 282 YNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCS 326
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 152/316 (48%), Gaps = 5/316 (1%)
Query: 15 SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
S +++ ++G R A F+E+++ G P YNAL L KA +AL +
Sbjct: 285 STVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNAL----LQVFGKAGVYTEALSVLK 340
Query: 75 KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 134
+M+ C + VTYN L+ A +A + + + + + + P+ TY V+DAYGK
Sbjct: 341 EMEE-NSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKA 399
Query: 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
G E + MK C P+ T+N ++ GK+ ++M ++ + + P T+
Sbjct: 400 GKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATW 459
Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254
N+M+ G + VF++M + + P T+ +I+ YG C + A +++ E+++
Sbjct: 460 NTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTR 519
Query: 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314
G + V+T NA+L A G + + + + G P ++Y L+ + Y K
Sbjct: 520 AGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLG 579
Query: 315 VQKLLKRMEQNGIVPN 330
++++ R+++ I P+
Sbjct: 580 IERIENRIKEGQIFPS 595
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 95/404 (23%), Positives = 162/404 (40%), Gaps = 75/404 (18%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
M ++ + + Y+ +I GK G+ A+ LF M+ +GC P+ YNA+++ L +
Sbjct: 376 MMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSL-LGKK 434
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
++ + K L MK C PN T+N +L C VN +F+E+ PD
Sbjct: 435 SRSNEMIKMLC---DMKS-NGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPD 490
Query: 121 IYTYNGVMDAYGKNG-------MIKEM----------------------------ESVLS 145
T+N ++ AYG+ G M EM E+V+S
Sbjct: 491 RDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVIS 550
Query: 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKME---------QVFKSLMHSKE--------- 187
MKS KP +++L++ Y K + +E Q+F S M +
Sbjct: 551 DMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCR 610
Query: 188 -----------------KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 230
KP + FNSM+ + + + +AE + + + +P +TY
Sbjct: 611 ALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYN 670
Query: 231 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290
++ MY +A EI L K + + N +++ +C GL EA +
Sbjct: 671 SLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTER 730
Query: 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334
G+ P TY YT M ++ +++ M +N PN+ F
Sbjct: 731 GIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTF 774
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 142/326 (43%), Gaps = 14/326 (4%)
Query: 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
Y+ D Y+ ++ + G+ A+ LF M+ G P YN ++ ++
Sbjct: 206 YLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVF---GKMGRSW 262
Query: 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
K LG +M+ + K + T + +L ACA+ + + F EL P TYN
Sbjct: 263 RKILGVLDEMRS-KGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNA 321
Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
++ +GK G+ E SVL M+ N C D +T+N L+ +Y R F K +M K
Sbjct: 322 LLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAY-VRAGFSKEAAGVIEMMTKK 380
Query: 187 E-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
P T+ ++I YGKA + +A +F M P+ TY ++++ G SR+
Sbjct: 381 GVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLG---KKSRS 437
Query: 246 REIFDELSKL---GKDMKVSTLNAMLEAYCMN-GLPTEADLLFENSHNMGVTPDSSTYKL 301
E+ L + G +T N ML A C N G+ + +F + G PD T+
Sbjct: 438 NEMIKMLCDMKSNGCSPNRATWNTML-ALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNT 496
Query: 302 LYKAYTKANMKELVQKLLKRMEQNGI 327
L AY + + K+ M + G
Sbjct: 497 LISAYGRCGSEVDASKMYGEMTRAGF 522
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 142/326 (43%), Gaps = 6/326 (1%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D + + ++G++ Q +A L ++ D Y T LH + KA
Sbjct: 174 DHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAY----TTILHAYSRTGKYEKA 229
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHESILAPDIYTYNGVM 128
+ F++MK M P +VTYN++L + R+ ++ + E+ L D +T + V+
Sbjct: 230 IDLFERMKEMGP-SPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVL 288
Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
A + G+++E + + +KS +P +T+N L+ +GK + + V K + +
Sbjct: 289 SACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCP 348
Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
T+N ++ Y +A +A V + MT P+ ITY +I YG A ++
Sbjct: 349 ADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKL 408
Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
F + + G T NA+L E + + + G +P+ +T+ +
Sbjct: 409 FYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGN 468
Query: 309 ANMKELVQKLLKRMEQNGIVPNKRFF 334
M + V ++ + M+ G P++ F
Sbjct: 469 KGMDKFVNRVFREMKSCGFEPDRDTF 494
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/333 (21%), Positives = 138/333 (41%), Gaps = 44/333 (13%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
++ ++A+ G KG + +F EM++ G PD +N LI+A+ + A +K G
Sbjct: 459 WNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDA-SKMYGEM 517
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
+ G C + TYN LL A A+ + + ++ P +Y+ ++ Y K
Sbjct: 518 TR-AGFNAC---VTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAK 573
Query: 134 NGMIKEMESVLSRMKSNQC-----------------------------------KPDIIT 158
G +E + +R+K Q KPD++
Sbjct: 574 GGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVI 633
Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218
FN ++ + + +D+ E + +S+ P L T+NS++ Y + KAE + + +
Sbjct: 634 FNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLE 693
Query: 219 AMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
+ P ++Y +I G+C + A + E+++ G + T N + Y G+
Sbjct: 694 KSQLKPDLVSYNTVIK--GFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGM 751
Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
E + + E P+ T+K++ Y +A
Sbjct: 752 FAEIEDVIECMAKNDCRPNELTFKMVVDGYCRA 784
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 124/276 (44%), Gaps = 23/276 (8%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
Y+ L+ + +KG R + S+M++ G +P + Y+ ++ + AK Y
Sbjct: 529 YNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCY----------AKGGNYL 578
Query: 74 QKMKGMERCK---------PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
G+ER + P+ + LL A + R + F + PD+ +
Sbjct: 579 ----GIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIF 634
Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
N ++ + +N M + E +L ++ + PD++T+N L+D Y +R K E++ K+L
Sbjct: 635 NSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEK 694
Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
S+ KP L ++N++I + + L +A + +MT P TY ++ Y +
Sbjct: 695 SQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAE 754
Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280
++ + ++K T +++ YC G +EA
Sbjct: 755 IEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEA 790
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 159/358 (44%), Gaps = 44/358 (12%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D Y ++ + K+G T LA L ++M P +YN +I K K + A
Sbjct: 220 DLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC----KYKHMDDA 275
Query: 70 LGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
L F++M KG+ +PN+VTY+ L+ + L ++ E + PD++T++ +
Sbjct: 276 LNLFKEMETKGI---RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSAL 332
Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
+DA+ K G + E E + M P I+T++ LI+ + D+ +Q+F+ ++
Sbjct: 333 IDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 392
Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247
P + T+N++I + K + + VF++M+ + +TY +I + A+E
Sbjct: 393 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 452
Query: 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE-----------NSHNM------ 290
IF E+ G + T N +L+ C NG +A ++FE ++N+
Sbjct: 453 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 512
Query: 291 ------------------GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
GV PD Y + + + KE L K M+++G +PN
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 570
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 136/313 (43%), Gaps = 5/313 (1%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
YS LI+ + G+ A L S+M PD ++ALI A + K L +A +
Sbjct: 294 YSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFV----KEGKLVEAEKLY 349
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
+M P+IVTY+ L+ +D+ +F+ + PD+ TYN ++ + K
Sbjct: 350 DEMVK-RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCK 408
Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
++E V M + +T+N+LI + D +++FK ++ P + T
Sbjct: 409 YKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMT 468
Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
+N+++ K KA VF+ + K P+ TY +I V ++F LS
Sbjct: 469 YNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLS 528
Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
G V N M+ +C G EAD LF+ G P+S Y L +A + +E
Sbjct: 529 LKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDRE 588
Query: 314 LVQKLLKRMEQNG 326
+L+K M G
Sbjct: 589 ASAELIKEMRSCG 601
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/352 (23%), Positives = 153/352 (43%), Gaps = 40/352 (11%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
+SKL++ + K + + + L +M+N G + Y+ LI ALA LG
Sbjct: 84 FSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALA-VLGKM 142
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
K+ G E PNIVT + LL ++ + + AL ++ + P+ T+N ++
Sbjct: 143 MKL-GYE---PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198
Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
+ E +++ RM + C+PD++T+ ++++ KR D + + K +P +
Sbjct: 199 HNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLI 258
Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM---YGYCDNVSR------ 244
+N++I K + A +F++M P+ +TY +I+ YG + SR
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318
Query: 245 --------------------------AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278
A +++DE+ K D + T ++++ +CM+
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378
Query: 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
EA +FE + PD TY L K + K E ++ + M Q G+V N
Sbjct: 379 EAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 430
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 8/198 (4%)
Query: 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
QR + +T Y+ LI + + G +A +F EM + G P+ YN L+
Sbjct: 424 QRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLE 483
Query: 64 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
KA+ Y Q+ K ME P I TYNI++ +A V+ LF L + PD+
Sbjct: 484 KAMV-VFEYLQRSK-ME---PTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVA 538
Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY---GKRQAFDKMEQVFK 180
YN ++ + + G +E +++ MK + P+ +N LI + G R+A ++ + +
Sbjct: 539 YNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMR 598
Query: 181 SLMHSKEKPTLPTFNSMI 198
S + + T+ +M+
Sbjct: 599 SCGFAGDASTIGLVTNML 616
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 118/278 (42%), Gaps = 5/278 (1%)
Query: 66 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
L A+ F +M R P+I+ ++ LL A A+ D V +L +++ + + YTY+
Sbjct: 62 LDDAVALFGEMVK-SRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120
Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
+++ + + + +VL +M +P+I+T + L++ Y + + + + +
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180
Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVS 243
+P TFN++I +A + +M A P +TY ++ G C +
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVN--GLCKRGDTD 238
Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
A + +++ + + V N +++ C +A LF+ G+ P+ TY L
Sbjct: 239 LAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLI 298
Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
+LL M + I P+ F ++ F
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAF 336
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 109/264 (41%), Gaps = 13/264 (4%)
Query: 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161
+D ALF E+ +S P I ++ ++ A K + S+ +M++ + T+++
Sbjct: 62 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121
Query: 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221
LI+ + +R V +M +P + T +S++ Y ++ +A + +M
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181
Query: 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281
Y P+ +T+ +I + S A + D + G + T ++ C G + D
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRG---DTD 238
Query: 282 LLFE--NSHNMG-VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
L F N G + P Y + K + L K ME GI PN +
Sbjct: 239 LAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN-------V 291
Query: 339 ETFSSSLAGSQSGSAKTDLTRSLS 362
T+SS ++ + +D +R LS
Sbjct: 292 VTYSSLISCLCNYGRWSDASRLLS 315
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 151/354 (42%), Gaps = 44/354 (12%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
Y ++ VM K GQT LAM L +M + D Y+ +I K +L A F
Sbjct: 215 YGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLC----KDGSLDNAFNLF 270
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
+M+ ++ K +I+ Y L+R A D L +++ + + PD+ ++ ++D + K
Sbjct: 271 NEME-IKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVK 329
Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
G ++E E + M PD +T+ LID + K DK + ++ P + T
Sbjct: 330 EGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRT 389
Query: 194 FNSMIINYGKARL---------------------------QGKAEY--------VFQKMT 218
FN +I Y KA L QG E +FQ+M
Sbjct: 390 FNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMV 449
Query: 219 AMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276
+ + P ++Y+ I + G CDN +A EIF+++ K ++ + N ++ C
Sbjct: 450 SRRVRPDIVSYK--ILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASK 507
Query: 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
+A LF + GV PD TY ++ K L ++ME++G PN
Sbjct: 508 VDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPN 561
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 136/327 (41%), Gaps = 48/327 (14%)
Query: 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
+R D +S LI K+G+ R A L EM G PD Y +LI K
Sbjct: 310 KRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFC----KE 365
Query: 64 KALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
L KA M KG C PNI T+NIL+ +A +D LF+++ + D
Sbjct: 366 NQLDKANHMLDLMVSKG---CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADT 422
Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
TYN ++ + + G ++ + + M S + +PDI+++ +L+D +K ++F+
Sbjct: 423 VTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEK 482
Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD- 240
+ SK + + +N I ++G C+
Sbjct: 483 IEKSKMELDIGIYN-------------------------------------IIIHGMCNA 505
Query: 241 -NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
V A ++F L G V T N M+ C G +EADLLF G +P+ TY
Sbjct: 506 SKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTY 565
Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNG 326
+L +A+ KL++ +++ G
Sbjct: 566 NILIRAHLGEGDATKSAKLIEEIKRCG 592
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 144/328 (43%), Gaps = 13/328 (3%)
Query: 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
Y DT +S LI + +G+ A+ L M G +P NAL+ L K +
Sbjct: 138 YEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNG-LCLNGK---V 193
Query: 67 AKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
+ A+ +M G + PN VTY +L+ ++ L +++ E + D Y
Sbjct: 194 SDAVLLIDRMVETGFQ---PNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKY 250
Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
+ ++D K+G + ++ + M+ K DII + LI + +D ++ + ++
Sbjct: 251 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK 310
Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNV 242
K P + F+++I + K +AE + ++M +P +TY +I G+C + +
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLID--GFCKENQL 368
Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
+A + D + G + T N ++ YC L + LF GV D+ TY L
Sbjct: 369 DKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTL 428
Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
+ + + E+ ++L + M + P+
Sbjct: 429 IQGFCELGKLEVAKELFQEMVSRRVRPD 456
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 6/195 (3%)
Query: 137 IKEMESV--LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194
IKE ++V M ++ +P +I F+ L + + +D + + K + L T
Sbjct: 51 IKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTL 110
Query: 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDEL 252
+ MI + R A K+ + Y P +T+ +I G C VS A E+ D +
Sbjct: 111 SIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLIN--GLCLEGRVSEALELVDRM 168
Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
++G + TLNA++ C+NG ++A LL + G P+ TY + K K+
Sbjct: 169 VEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQT 228
Query: 313 ELVQKLLKRMEQNGI 327
L +LL++ME+ I
Sbjct: 229 ALAMELLRKMEERKI 243
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/314 (20%), Positives = 125/314 (39%), Gaps = 9/314 (2%)
Query: 30 AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
A+ LF EM S RP P + + + R K L L ++KG+ N+ T
Sbjct: 56 AVDLFQEMTRS--RPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAH---NLYTL 110
Query: 90 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
+I++ C + R + + ++ + PD T++ +++ G + E ++ RM
Sbjct: 111 SIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVE 170
Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209
KP +IT N L++ + ++ + +P T+ ++ K+
Sbjct: 171 MGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTAL 230
Query: 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAM 267
A + +KM K + Y II G C + + A +F+E+ G + +
Sbjct: 231 AMELLRKMEERKIKLDAVKYSIIID--GLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTL 288
Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
+ +C G + L + +TPD + L + K ++L K M Q GI
Sbjct: 289 IRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGI 348
Query: 328 VPNKRFFLEALETF 341
P+ + ++ F
Sbjct: 349 SPDTVTYTSLIDGF 362
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 5/136 (3%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D GIY+ +I M + A LF + G +PD YN +I K +L++A
Sbjct: 491 DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLC----KKGSLSEA 546
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
F+KM+ + PN TYNIL+RA + + L +E+ + D T V+D
Sbjct: 547 DLLFRKMEE-DGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVD 605
Query: 130 AYGKNGMIKEMESVLS 145
+ K +LS
Sbjct: 606 MLSDGRLKKSFLDMLS 621
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 160/353 (45%), Gaps = 50/353 (14%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT---RDKAKALAKAL 70
YS +I + K G A LF+EM G + D YN LI + D AK L +
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325
Query: 71 GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
+ PN+VT+++L+ + + + + + L KE+ + +AP+ TYN ++D
Sbjct: 326 K--------RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDG 377
Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
+ K ++E ++ M S C PDI+TFN+LI+ Y K D ++F+ +
Sbjct: 378 FCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIAN 437
Query: 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREI 248
T+N+++ + ++ A+ +FQ+M + + P ++Y+ I + G CDN + +A EI
Sbjct: 438 TVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYK--ILLDGLCDNGELEKALEI 495
Query: 249 FDEL--SKLGKDMKVSTL---------------------------------NAMLEAYCM 273
F ++ SK+ D+ + + N M+ C
Sbjct: 496 FGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCR 555
Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
++AD+LF G PD TY +L +A+ + +L++ M+ +G
Sbjct: 556 KDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSG 608
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 137/302 (45%), Gaps = 7/302 (2%)
Query: 25 GQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CK 83
G+ A+ L M +G +P+ Y + L+ K+ A A+ +KM+ ER K
Sbjct: 207 GKVSDAVVLIDRMVETGFQPNEVTYGPV----LNVMCKSGQTALAMELLRKME--ERNIK 260
Query: 84 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
+ V Y+I++ + ++D LF E+ DI TYN ++ + G + +
Sbjct: 261 LDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKL 320
Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
L M + P+++TF++LIDS+ K + +Q+ K +M P T+NS+I + K
Sbjct: 321 LRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCK 380
Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263
+A + M + P +T+ +I Y + + E+F E+S G T
Sbjct: 381 ENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVT 440
Query: 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323
N +++ +C +G A LF+ + V PD +YK+L E ++ ++E
Sbjct: 441 YNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIE 500
Query: 324 QN 325
++
Sbjct: 501 KS 502
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 122/265 (46%), Gaps = 5/265 (1%)
Query: 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
QR +T Y+ LI K+ + A+ + M + GC PD +N LI + KA
Sbjct: 361 QRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYC----KA 416
Query: 64 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
+ L F++M + N VTYN L++ Q+ ++ LF+E+ + PDI +
Sbjct: 417 NRIDDGLELFREMS-LRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVS 475
Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
Y ++D NG +++ + +++ ++ + DI + ++I D +F SL
Sbjct: 476 YKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLP 535
Query: 184 HSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243
K +N MI + KA+ +F+KMT + P +TY +I + D+ +
Sbjct: 536 LKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDAT 595
Query: 244 RAREIFDELSKLGKDMKVSTLNAML 268
A E+ +E+ G VST+ ++
Sbjct: 596 TAAELIEEMKSSGFPADVSTVKMVI 620
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 130/305 (42%), Gaps = 7/305 (2%)
Query: 41 GCRPDPSVYNALITA-HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 99
G PD ++N L+ L R +++AL +M M KP ++T N L+
Sbjct: 153 GYEPDTVIFNTLLNGLCLECR-----VSEALELVDRMVEMGH-KPTLITLNTLVNGLCLN 206
Query: 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
V L + E+ P+ TY V++ K+G +L +M+ K D + +
Sbjct: 207 GKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKY 266
Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
+++ID K + D +F + K + T+N++I + A + + M
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIK 326
Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
K +P+ +T+ +I + + A ++ E+ + G T N++++ +C E
Sbjct: 327 RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEE 386
Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
A + + + G PD T+ +L Y KAN + +L + M G++ N + ++
Sbjct: 387 AIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQ 446
Query: 340 TFSSS 344
F S
Sbjct: 447 GFCQS 451
Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 146/328 (44%), Gaps = 13/328 (3%)
Query: 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
Y DT I++ L+ + + + A+ L M G +P N L+ L K +
Sbjct: 154 YEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNG-LCLNGK---V 209
Query: 67 AKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
+ A+ +M G + PN VTY +L ++ L +++ E + D Y
Sbjct: 210 SDAVVLIDRMVETGFQ---PNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKY 266
Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
+ ++D K+G + ++ + M+ K DIIT+N LI + +D ++ + ++
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIK 326
Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNV 242
K P + TF+ +I ++ K +A+ + ++M P+ ITY +I G+C + +
Sbjct: 327 RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLID--GFCKENRL 384
Query: 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302
A ++ D + G D + T N ++ YC + LF GV ++ TY L
Sbjct: 385 EEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTL 444
Query: 303 YKAYTKANMKELVQKLLKRMEQNGIVPN 330
+ + ++ E+ +KL + M + P+
Sbjct: 445 VQGFCQSGKLEVAKKLFQEMVSRRVRPD 472
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/285 (20%), Positives = 115/285 (40%), Gaps = 41/285 (14%)
Query: 84 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
P ++ +N L A A+ + + V AL K++ +A IYT + +++ + + + S
Sbjct: 86 PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145
Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
+ ++ +PD + FN L++ + ++ ++ KPTL T N+++
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLV---NG 202
Query: 204 ARLQGK---AEYVFQKMTAMKYTPSFITYECI---------------------------- 232
L GK A + +M + P+ +TY +
Sbjct: 203 LCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLD 262
Query: 233 -----ITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
I + G C + + A +F+E+ G + T N ++ +C G + L
Sbjct: 263 AVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLR 322
Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
+ ++P+ T+ +L ++ K +LLK M Q GI PN
Sbjct: 323 DMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPN 367
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 39/192 (20%)
Query: 173 DKMEQVFKSLMHSKEKPTLPTFN----------------------------------SMI 198
D +F+ ++ S+ PT+ FN S++
Sbjct: 70 DDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIM 129
Query: 199 IN-YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKL 255
IN + + R A K+ + Y P + + ++ G C VS A E+ D + ++
Sbjct: 130 INCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLN--GLCLECRVSEALELVDRMVEM 187
Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
G + TLN ++ C+NG ++A +L + G P+ TY + K+ L
Sbjct: 188 GHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALA 247
Query: 316 QKLLKRMEQNGI 327
+LL++ME+ I
Sbjct: 248 MELLRKMEERNI 259
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 32/191 (16%)
Query: 5 RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
R IA+T Y+ L+ + G+ +A LF EM + RPD Y L+ + K
Sbjct: 432 RGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEK 491
Query: 65 ALAKALGYFQKMK-------------GM------------------ERCKPNIVTYNILL 93
AL + G +K K GM + K + YNI++
Sbjct: 492 AL-EIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMI 550
Query: 94 RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
+ ++ + + LF+++ E APD TYN ++ A+ + ++ MKS+
Sbjct: 551 SELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFP 610
Query: 154 PDIITFNLLID 164
D+ T ++I+
Sbjct: 611 ADVSTVKMVIN 621
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 5/141 (3%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D GIY +I M + A LF + G + D YN +I+ L +D +L+KA
Sbjct: 507 DIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMIS-ELCRKD---SLSKA 562
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
F+KM E P+ +TYNIL+RA + L +E+ S D+ T V++
Sbjct: 563 DILFRKMTE-EGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVIN 621
Query: 130 AYGKNGMIKEMESVLSRMKSN 150
+ K +LS +++
Sbjct: 622 MLSSGELDKSFLDMLSTTRAS 642
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 152/330 (46%), Gaps = 11/330 (3%)
Query: 1 MQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 60
M Q + D ++ L+ + K G + A+ + M G PD YN++I+
Sbjct: 285 MSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLC--- 341
Query: 61 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD 120
K + +A+ +M + C PN VTYN L+ + V++ L + L + PD
Sbjct: 342 -KLGEVKEAVEVLDQMITRD-CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPD 399
Query: 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180
+ T+N ++ + + M+S C+PD T+N+LIDS + D+ + K
Sbjct: 400 VCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLK 459
Query: 181 SLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
+ S ++ T+N++I + KA +AE +F +M + + +TY +I G C
Sbjct: 460 QMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLID--GLCK 517
Query: 241 N--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTEADLLFENSHNMGVTPDSS 297
+ V A ++ D++ G+ T N++L +C G + AD++ + N G PD
Sbjct: 518 SRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSN-GCEPDIV 576
Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
TY L KA E+ KLL+ ++ GI
Sbjct: 577 TYGTLISGLCKAGRVEVASKLLRSIQMKGI 606
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 146/358 (40%), Gaps = 32/358 (8%)
Query: 6 WYI-ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 64
W I D ++ LI + + Q R A+ + +M + G PD + ++ ++ D
Sbjct: 183 WGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDG 242
Query: 65 AL-------------------------------AKALGYFQKMKGMERCKPNIVTYNILL 93
AL AL + Q+M + P+ T+N L+
Sbjct: 243 ALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLV 302
Query: 94 RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 153
+A +V + + + PD+YTYN V+ K G +KE VL +M + C
Sbjct: 303 NGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCS 362
Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
P+ +T+N LI + K ++ ++ + L P + TFNS+I R A +
Sbjct: 363 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL 422
Query: 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
F++M + P TY +I + A + ++ G V T N +++ +C
Sbjct: 423 FEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCK 482
Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
EA+ +F+ GV+ +S TY L K+ E +L+ +M G P+K
Sbjct: 483 ANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDK 540
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 152/323 (47%), Gaps = 9/323 (2%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
+T Y+ LI+ + K+ Q A L + + G PD +N+LI TR+ A+
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAME-- 421
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
F++M+ + C+P+ TYN+L+ + +D+ + K++ S A + TYN ++D
Sbjct: 422 --LFEEMRS-KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLID 478
Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
+ K +E E + M+ + + +T+N LID K + + Q+ ++ +KP
Sbjct: 479 GFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKP 538
Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
T+NS++ ++ + KA + Q MT+ P +TY +I+ V A ++
Sbjct: 539 DKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLL 598
Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF-ENSHNMGVTPDSSTYKLLYKAYTK 308
+ G ++ N +++ TEA LF E PD+ +Y+++++
Sbjct: 599 RSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCN 658
Query: 309 AN--MKELVQKLLKRMEQNGIVP 329
++E V L++ +E+ G VP
Sbjct: 659 GGGPIREAVDFLVELLEK-GFVP 680
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 128/331 (38%), Gaps = 44/331 (13%)
Query: 32 WLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI 91
W+ E G +PD YN ++ +L + L + + G+ KP++ T+N+
Sbjct: 143 WMIDEF---GLKPDTHFYNRML--NLLVDGNSLKLVEISHAKMSVWGI---KPDVSTFNV 194
Query: 92 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151
L++A +A + + +++ L PD T+ VM Y + G + + +M
Sbjct: 195 LIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFG 254
Query: 152 CK------------------------------------PDIITFNLLIDSYGKRQAFDKM 175
C PD TFN L++ K
Sbjct: 255 CSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHA 314
Query: 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235
++ ++ P + T+NS+I K +A V +M +P+ +TY +I+
Sbjct: 315 IEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLIST 374
Query: 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295
+ V A E+ L+ G V T N++++ C+ A LFE + G PD
Sbjct: 375 LCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPD 434
Query: 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
TY +L + + +LK+ME +G
Sbjct: 435 EFTYNMLIDSLCSKGKLDEALNMLKQMELSG 465
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 103/251 (41%), Gaps = 37/251 (14%)
Query: 117 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
+P+ Y ++ G++G +M+ +L MKS++C+ TF +LI+SY + + D++
Sbjct: 79 FSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEIL 138
Query: 177 QVFKSLM-------------------------------HSKE-----KPTLPTFNSMIIN 200
V ++ H+K KP + TFN +I
Sbjct: 139 SVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKA 198
Query: 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK 260
+A A + + M + P T+ ++ Y ++ A I +++ + G
Sbjct: 199 LCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWS 258
Query: 261 VSTLNAMLEAYCMNGLPTEA-DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319
++N ++ +C G +A + + E S+ G PD T+ L KA + +++
Sbjct: 259 NVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIM 318
Query: 320 KRMEQNGIVPN 330
M Q G P+
Sbjct: 319 DVMLQEGYDPD 329
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 283 LFENSHN----MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338
L E SH G+ PD ST+ +L KA +A+ +L+ M G+VP+++ F +
Sbjct: 172 LVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVM 231
Query: 339 ETF 341
+ +
Sbjct: 232 QGY 234
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 155/327 (47%), Gaps = 15/327 (4%)
Query: 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT---AHLHTRDKAKA 65
AD I++ +I + K A+ LF EM G RP+ Y++LI+ ++ D ++
Sbjct: 258 ADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQL 317
Query: 66 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
L+ + ++ PN+VT+N L+ A + + L+ ++ + + PDI+TYN
Sbjct: 318 LSDMIE--------KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYN 369
Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
+++ + + + + + + M S C PD++T+N LI + K + + ++F+ + H
Sbjct: 370 SLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHR 429
Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VS 243
T+ ++I A+ VF++M + P +TY I + G C+N +
Sbjct: 430 GLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYS--ILLDGLCNNGKLE 487
Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
+A E+FD + K + + M+E C G + LF + GV P+ TY +
Sbjct: 488 KALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMI 547
Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330
+ + LLK+M+++G +PN
Sbjct: 548 SGLCSKRLLQEAYALLKKMKEDGPLPN 574
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 146/323 (45%), Gaps = 9/323 (2%)
Query: 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
Y DT ++ LI + + A+ L M GC+P+ Y ++ D AL
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 245
Query: 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
KM+ + + ++V +N ++ + + R+VD LFKE+ + P++ TY+
Sbjct: 246 ----NLLNKMEA-AKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 300
Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
++ G + +LS M + P+++TFN LID++ K F + E+++ ++
Sbjct: 301 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS 360
Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
P + T+NS++ + KA+ +F+ M + P +TY +I G+C + V
Sbjct: 361 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIK--GFCKSKRVED 418
Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
E+F E+S G T +++ +G A +F+ + GV PD TY +L
Sbjct: 419 GTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLD 478
Query: 305 AYTKANMKELVQKLLKRMEQNGI 327
E ++ M+++ I
Sbjct: 479 GLCNNGKLEKALEVFDYMQKSEI 501
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 145/305 (47%), Gaps = 13/305 (4%)
Query: 30 AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CKPNIVT 88
A+ L +M G RPD + LI L +KA ++A+ +M ++R C+PN+VT
Sbjct: 174 AVALVDQMVEMGYRPDTITFTTLIHG-LFLHNKA---SEAVALVDRM--VQRGCQPNLVT 227
Query: 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
Y +++ + + D L ++ + + D+ +N ++D+ K + + ++ M+
Sbjct: 228 YGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEME 287
Query: 149 SNQCKPDIITFNLLID---SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
+ +P+++T++ LI SYG+ + Q+ ++ K P L TFN++I + K
Sbjct: 288 TKGIRPNVVTYSSLISCLCSYGR---WSDASQLLSDMIEKKINPNLVTFNALIDAFVKEG 344
Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
+AE ++ M P TY ++ + D + +A+++F+ + V T N
Sbjct: 345 KFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYN 404
Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
+++ +C + + LF + G+ D+ TY L + + QK+ K+M +
Sbjct: 405 TLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD 464
Query: 326 GIVPN 330
G+ P+
Sbjct: 465 GVPPD 469
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 131/311 (42%), Gaps = 44/311 (14%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKALAKALG 71
++ LI K+G+ A L+ +M PD YN+L+ +H R DKAK +
Sbjct: 333 FNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQM----- 387
Query: 72 YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
F+ M + C P++VTYN L++ +++ V+ LF+E+ L D TY ++
Sbjct: 388 -FEFMVSKD-CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 445
Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
+G + V +M S+ PDI+T+++L+D +K +VF + S+ K +
Sbjct: 446 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI 505
Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
+ +MI KA GK V ++F
Sbjct: 506 YIYTTMIEGMCKA---GK--------------------------------VDDGWDLFCS 530
Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
LS G V T N M+ C L EA L + G P+S TY L +A+ +
Sbjct: 531 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD 590
Query: 312 KELVQKLLKRM 322
K +L++ M
Sbjct: 591 KAASAELIREM 601
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 79/355 (22%), Positives = 145/355 (40%), Gaps = 46/355 (12%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
++KL++ + K + + + L +M+ YN LI + ALA LG
Sbjct: 88 FNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALA-LLGKM 146
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
K+ G E P+IVT + LL + + AL ++ E PD T+ ++
Sbjct: 147 MKL-GYE---PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 134 NGMIKEMESVLSRMKSNQCKPDIIT----------------------------------- 158
+ E +++ RM C+P+++T
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262
Query: 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI---INYGKARLQGKAEYVFQ 215
FN +IDS K + D +FK + +P + T++S+I +YG+ A +
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGR---WSDASQLLS 319
Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
M K P+ +T+ +I + A +++D++ K D + T N+++ +CM+
Sbjct: 320 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHD 379
Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
+A +FE + PD TY L K + K+ E +L + M G+V +
Sbjct: 380 RLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 434
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 116/278 (41%), Gaps = 5/278 (1%)
Query: 66 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
L A+G F M R P+IV +N LL A A+ + D V +L +++ + +YTYN
Sbjct: 66 LDDAIGLFGGMVK-SRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 124
Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
+++ + + I ++L +M +P I+T + L++ Y + + ++
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVS 243
+P TF ++I +A + +M P+ +TY ++ G C +
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN--GLCKRGDTD 242
Query: 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303
A + +++ + V N ++++ C +A LF+ G+ P+ TY L
Sbjct: 243 LALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 302
Query: 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
+LL M + I PN F ++ F
Sbjct: 303 SCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 340
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 94/242 (38%)
Query: 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
Y +LR +D LF + +S P I +N ++ A K + S+ +M+
Sbjct: 53 YREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQ 112
Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
+ + T+N+LI+ + +R + +M +P++ T +S++ Y +
Sbjct: 113 RLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRIS 172
Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
A + +M M Y P IT+ +I + S A + D + + G + T ++
Sbjct: 173 DAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVV 232
Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
C G A L + D + + + K + L K ME GI
Sbjct: 233 NGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIR 292
Query: 329 PN 330
PN
Sbjct: 293 PN 294
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 5/163 (3%)
Query: 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
R + DT Y+ LI + G A +F +M + G PD Y+ L+ +
Sbjct: 428 HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 487
Query: 64 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
KAL + Y QK K +I Y ++ +A VD LF L + P++ T
Sbjct: 488 KAL-EVFDYMQK----SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVT 542
Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
YN ++ +++E ++L +MK + P+ T+N LI ++
Sbjct: 543 YNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAH 585
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 155/341 (45%), Gaps = 9/341 (2%)
Query: 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
Y D Y+ +I + K + A F E+ G RP+ Y AL+ ++ + A
Sbjct: 186 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA- 244
Query: 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
A+ L K ++ PN++TY+ LL A + V + LF+E+ + PDI TY+
Sbjct: 245 ARLLSDMIK----KKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSS 300
Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
+++ + I E + M S C D++++N LI+ + K + + ++F+ +
Sbjct: 301 LINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG 360
Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
T+N++I + +A KA+ F +M +P TY I + G CDN + +
Sbjct: 361 LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN--ILLGGLCDNGELEK 418
Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
A IF+++ K D+ + T ++ C G EA LF + G+ PD TY +
Sbjct: 419 ALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMS 478
Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 345
+ V+ L +M+Q G++ N + T S+ L
Sbjct: 479 GLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAEL 519
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 148/326 (45%), Gaps = 9/326 (2%)
Query: 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
Y D L+ ++ + A+ L +M G +PD YNA+I + T K +
Sbjct: 151 YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKT----KRV 206
Query: 67 AKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
A +F+++ KG+ +PN+VTY L+ + L ++ + + P++ TY
Sbjct: 207 NDAFDFFKEIERKGI---RPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITY 263
Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
+ ++DA+ KNG + E + + M PDI+T++ LI+ D+ Q+F ++
Sbjct: 264 SALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVS 323
Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
+ ++N++I + KA+ +F++M+ + +TY +I + +V +
Sbjct: 324 KGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDK 383
Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
A+E F ++ G + T N +L C NG +A ++FE+ + D TY + +
Sbjct: 384 AQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIR 443
Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
K E L + G+ P+
Sbjct: 444 GMCKTGKVEEAWSLFCSLSLKGLKPD 469
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 144/303 (47%), Gaps = 9/303 (2%)
Query: 30 AMWLFSEMRNSGCRPDPSV--YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 87
A+ LFS+M S RP PS+ +N L++A + K + +LG ++ G+ + ++
Sbjct: 69 AIDLFSDMVKS--RPFPSIVDFNRLLSAIVKL--KKYDVVISLGKKMEVLGI---RNDLY 121
Query: 88 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147
T+NI++ V ++ ++ + PD T +++ + + + + S++ +M
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181
Query: 148 KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207
KPDI+ +N +IDS K + + FK + +P + T+ +++ +
Sbjct: 182 VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRW 241
Query: 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267
A + M K TP+ ITY ++ + V A+E+F+E+ ++ D + T +++
Sbjct: 242 SDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSL 301
Query: 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
+ C++ EA+ +F+ + G D +Y L + KA E KL + M Q G+
Sbjct: 302 INGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGL 361
Query: 328 VPN 330
V N
Sbjct: 362 VSN 364
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 5/145 (3%)
Query: 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
QR +++T Y+ LI + G A FS+M G PD YN L+ +
Sbjct: 358 QRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGE-- 415
Query: 64 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
L KAL F+ M+ E +IVTY ++R + V++ +LF L L PDI T
Sbjct: 416 --LEKALVIFEDMQKREM-DLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVT 472
Query: 124 YNGVMDAYGKNGMIKEMESVLSRMK 148
Y +M G++ E+E++ ++MK
Sbjct: 473 YTTMMSGLCTKGLLHEVEALYTKMK 497
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 4/190 (2%)
Query: 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213
P I+ FN L+ + K + +D + + K + + L TFN +I + A +
Sbjct: 83 PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142
Query: 214 FQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
KM + Y P +T ++ G+C + VS A + D++ ++G + NA++++
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVN--GFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSL 200
Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
C +A F+ G+ P+ TY L ++ +LL M + I PN
Sbjct: 201 CKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNV 260
Query: 332 RFFLEALETF 341
+ L+ F
Sbjct: 261 ITYSALLDAF 270
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 7/186 (3%)
Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
+F ++ S+ P++ FN ++ K + + +KM + T+ +I +
Sbjct: 71 DLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCF 130
Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
C VS A I ++ KLG + T+ +++ +C ++A L + +G PD
Sbjct: 131 CCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDI 190
Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTD 356
Y + + K K +E+ GI PN + T+++ + G + S +D
Sbjct: 191 VAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPN-------VVTYTALVNGLCNSSRWSD 243
Query: 357 LTRSLS 362
R LS
Sbjct: 244 AARLLS 249
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/333 (22%), Positives = 163/333 (48%), Gaps = 7/333 (2%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
Y+ L+ + ++ + L S++ +G +PD ++NA+I A ++ L +A+ F
Sbjct: 357 YTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINAS----SESGNLDQAMKIF 412
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE-LHESILAPDIYTYNGVMDAYG 132
+KMK CKP T+N L++ + +++ + L L + +L P+ T N ++ A+
Sbjct: 413 EKMK-ESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWC 471
Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ-VFKSLMHSKEKPTL 191
I+E +++ +M+S KPD++TFN L +Y + + E + ++H+K KP +
Sbjct: 472 NQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNV 531
Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
T +++ Y + +A F +M + P+ + +I + +++ E+ D
Sbjct: 532 RTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDL 591
Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
+ + G V T + ++ A+ G + ++ + G+ PD + +L K Y +A
Sbjct: 592 MEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGE 651
Query: 312 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
E +++L +M + G+ PN + + + + S+
Sbjct: 652 PEKAEQILNQMRKFGVRPNVVIYTQIISGWCSA 684
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 143/326 (43%), Gaps = 12/326 (3%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
DT +++ +I + G AM +F +M+ SGC+P S +N LI + K L ++
Sbjct: 388 DTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGY----GKIGKLEES 443
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
M E +PN T NIL++A R +++ + ++ + PD+ T+N +
Sbjct: 444 SRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAK 503
Query: 130 AYGKNGMIKEMES-VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE- 187
AY + G E ++ RM N+ KP++ T +++ Y + KME+ + KE
Sbjct: 504 AYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEE---GKMEEALRFFYRMKEL 560
Query: 188 --KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
P L FNS+I + V M P +T+ ++ + ++ R
Sbjct: 561 GVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRC 620
Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
EI+ ++ + G D + + + + Y G P +A+ + GV P+ Y +
Sbjct: 621 EEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISG 680
Query: 306 YTKAN-MKELVQKLLKRMEQNGIVPN 330
+ A MK+ +Q K G+ PN
Sbjct: 681 WCSAGEMKKAMQVYKKMCGIVGLSPN 706
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 119/263 (45%), Gaps = 2/263 (0%)
Query: 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
KP+++TY L+ A + ++ + +L ++ ++ L PD +N +++A ++G + +
Sbjct: 351 KPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMK 410
Query: 143 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINY 201
+ +MK + CKP TFN LI YGK ++ ++ ++ + +P T N ++ +
Sbjct: 411 IFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAW 470
Query: 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE-IFDELSKLGKDMK 260
R +A + KM + P +T+ + Y + A + I +
Sbjct: 471 CNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPN 530
Query: 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320
V T ++ YC G EA F +GV P+ + L K + N + V +++
Sbjct: 531 VRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVD 590
Query: 321 RMEQNGIVPNKRFFLEALETFSS 343
ME+ G+ P+ F + +SS
Sbjct: 591 LMEEFGVKPDVVTFSTLMNAWSS 613
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 6/242 (2%)
Query: 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
+ +++F L E P + TY ++ A + + S++S+++ N KPD I FN +I
Sbjct: 337 EAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAII 396
Query: 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK-ARLQGKAEYVFQKMTAMKY 222
++ + D+ ++F+ + S KPT TFN++I YGK +L+ + + +
Sbjct: 397 NASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEML 456
Query: 223 TPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTE 279
P+ T C I + +C+ + A I ++ G V T N + +AY G T
Sbjct: 457 QPNDRT--CNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTA 514
Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339
D++ + V P+ T + Y + E + RM++ G+ PN F ++
Sbjct: 515 EDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIK 574
Query: 340 TF 341
F
Sbjct: 575 GF 576
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/329 (18%), Positives = 142/329 (43%), Gaps = 40/329 (12%)
Query: 36 EMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95
+M++ G +PD +N L A + R + A+ + + + + KPN+ T ++
Sbjct: 485 KMQSYGVKPDVVTFNTL--AKAYARIGSTCTAEDMIIPRMLH--NKVKPNVRTCGTIVNG 540
Query: 96 CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155
+ +++ F + E + P+++ +N ++ + + + V+ M+ KPD
Sbjct: 541 YCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPD 600
Query: 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 215
++TF+ L++++ + E+++ ++ P + F+ + Y +A KAE +
Sbjct: 601 VVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILN 660
Query: 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275
+M P+ + Y II+ + + +A +++ ++ +
Sbjct: 661 QMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGI-------------------- 700
Query: 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335
+G++P+ +TY+ L + +A ++LLK ME +VP ++ +
Sbjct: 701 --------------VGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRK-TM 745
Query: 336 EALETFSSSLAGSQSGSAKTDLTRSLSTA 364
+ + S+ S S A T L S ST+
Sbjct: 746 QLIADGWKSIGVSNSNDANT-LGSSFSTS 773
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 96/217 (44%), Gaps = 6/217 (2%)
Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
D+ + +M+ + G +E S+ + + KP +IT+ L+ + +++ F + +
Sbjct: 318 DVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLI 377
Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
+ + KP FN++I ++ +A +F+KM P+ T+ +I YG
Sbjct: 378 SKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKI 437
Query: 240 DNVSRAREIFDELSKLGKDM---KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
+ + + D + L +M T N +++A+C EA + + GV PD
Sbjct: 438 GKLEESSRLLDMM--LRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDV 495
Query: 297 STYKLLYKAYTKANMKELVQK-LLKRMEQNGIVPNKR 332
T+ L KAY + + ++ RM N + PN R
Sbjct: 496 VTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVR 532
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 4/127 (3%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D +S L + G+ A + ++MR G RP+ +Y +I+ A + KA
Sbjct: 635 DIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWC----SAGEMKKA 690
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
+ ++KM G+ PN+ TY L+ +A+ + L K++ + P T + D
Sbjct: 691 MQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLIAD 750
Query: 130 AYGKNGM 136
+ G+
Sbjct: 751 GWKSIGV 757
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 273 MNGL-----PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327
MNGL P EA +F G P TY L A T+ + L+ ++E+NG+
Sbjct: 326 MNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGL 385
Query: 328 VPNKRFFLEALETFSSS 344
P+ F + S S
Sbjct: 386 KPDTILFNAIINASSES 402
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 118 bits (296), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 156/331 (47%), Gaps = 4/331 (1%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
+S LI+ G+ G A+ +F+ M+ G RP+ YNA+I A + K +AK +F
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAK---FF 327
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
+M+ +P+ +T+N LL C++ + LF E+ + D+++YN ++DA K
Sbjct: 328 DEMQ-RNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICK 386
Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
G + +L++M + P++++++ +ID + K FD+ +F + + +
Sbjct: 387 GGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVS 446
Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
+N+++ Y K +A + ++M ++ +TY ++ YG +++F E+
Sbjct: 447 YNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMK 506
Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
+ + T + +++ Y GL EA +F + G+ D Y L A K +
Sbjct: 507 REHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVG 566
Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
L+ M + GI PN + ++ F S
Sbjct: 567 SAVSLIDEMTKEGISPNVVTYNSIIDAFGRS 597
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 147/318 (46%), Gaps = 10/318 (3%)
Query: 13 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
+ S +I+ +G+ G+ +A +F G ++ALI+A+ ++ +A+
Sbjct: 235 LASAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAY----GRSGLHEEAISV 290
Query: 73 FQKMK--GMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAPDIYTYNGVMD 129
F MK G+ +PN+VTYN ++ AC + QV F E+ + + PD T+N ++
Sbjct: 291 FNSMKEYGL---RPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLA 347
Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
+ G+ + ++ M + + + D+ ++N L+D+ K D ++ + + P
Sbjct: 348 VCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMP 407
Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
+ +++++I + KA +A +F +M + ++Y ++++Y A +I
Sbjct: 408 NVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDIL 467
Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
E++ +G V T NA+L Y G E +F V P+ TY L Y+K
Sbjct: 468 REMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKG 527
Query: 310 NMKELVQKLLKRMEQNGI 327
+ + ++ + + G+
Sbjct: 528 GLYKEAMEIFREFKSAGL 545
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 122/267 (45%), Gaps = 8/267 (2%)
Query: 86 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-IKEMESVL 144
+ ++ L+ A ++ ++ ++F + E L P++ TYN V+DA GK GM K++
Sbjct: 268 VYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFF 327
Query: 145 SRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204
M+ N +PD ITFN L+ + ++ +F + + + + + ++N+++ K
Sbjct: 328 DEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKG 387
Query: 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 264
A + +M + P+ ++Y +I + A +F E+ LG + +
Sbjct: 388 GQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSY 447
Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
N +L Y G EA + ++G+ D TY L Y K + V+K+ M++
Sbjct: 448 NTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKR 507
Query: 325 NGIVPNKRFFLEALETFSSSLAGSQSG 351
++PN L T+S+ + G G
Sbjct: 508 EHVLPN-------LLTYSTLIDGYSKG 527
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/338 (22%), Positives = 147/338 (43%), Gaps = 34/338 (10%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D Y+ L+ + K GQ LA + ++M P+ Y+ +I KA +A
Sbjct: 373 DVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFA----KAGRFDEA 428
Query: 70 LGYFQKMK----GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125
L F +M+ ++R V+YN LL + ++ + +E+ + D+ TYN
Sbjct: 429 LNLFGEMRYLGIALDR-----VSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYN 483
Query: 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185
++ YGK G E++ V + MK P+++T++ LID Y K + + ++F+ +
Sbjct: 484 ALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSA 543
Query: 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
+ + ++++I K L G A + +MT +P+ +TY II +G + R+
Sbjct: 544 GLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRS 603
Query: 246 REIFDELSKLGKDMKVSTL-----NAMLEAY--------------CMNGLPTEADLL--F 284
+ + S +S L N +++ + C G+ + +L F
Sbjct: 604 ADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVF 663
Query: 285 ENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322
H + + P+ T+ + A ++ N E LL+ +
Sbjct: 664 RKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEEL 701
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 45/235 (19%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA--HLHTRDKAKAL 66
AD +YS LI + K G A+ L EM G P+ YN++I A T D++
Sbjct: 547 ADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADY 606
Query: 67 ---------AKALGYFQKMKGMERC----KPNIVTYNILLRACAQA-RNVDQVNALFKEL 112
+ AL + +G + + N + C + + + + +F+++
Sbjct: 607 SNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKM 666
Query: 113 HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 172
H+ + P++ T++ +++A + ++ +L ++ K + LL+ G+R+
Sbjct: 667 HQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLM---GQRENV 723
Query: 173 DKMEQVFKSLMHSKEKPTLPTF----NSMIINYGKAR------LQGKAEYVFQKM 217
Q ++ + T F M+ ++G+ R L+G++ V++ +
Sbjct: 724 WLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEGRSRQVWENV 778
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/342 (23%), Positives = 154/342 (45%), Gaps = 11/342 (3%)
Query: 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
QR D Y+ LI + AM L EMR+ GC PD YN L+ K
Sbjct: 232 QRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGIC----KE 287
Query: 64 KALAKALGYFQKMKGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIY 122
L +A+ + M C+PN++T+NI+LR+ C+ R +D L ++ +P +
Sbjct: 288 GRLDEAIKFLNDMPS-SGCQPNVITHNIILRSMCSTGRWMD-AEKLLADMLRKGFSPSVV 345
Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
T+N +++ + G++ +L +M + C+P+ +++N L+ + K + D+ + + +
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405
Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242
+ P + T+N+M+ K A + ++++ +P ITY +I
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKT 465
Query: 243 SRAREIFDELSKLGKDMKVSTL--NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
+A ++ DE+ KD+K T+ ++++ G EA F MG+ P++ T+
Sbjct: 466 GKAIKLLDEMR--AKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFN 523
Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342
+ K+ + L M G PN+ + +E +
Sbjct: 524 SIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLA 565
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 157/352 (44%), Gaps = 22/352 (6%)
Query: 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
+ D Y+ +I+ K G+ A+ + M S PD YN ++ + D K L
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVLDRMSVS---PDVVTYNTILRSLC---DSGK-LK 221
Query: 68 KALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
+A+ +M ++R C P+++TY IL+ A + V L E+ + PD+ TYN
Sbjct: 222 QAMEVLDRM--LQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNV 279
Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
+++ K G + E L+ M S+ C+P++IT N+++ S + E++ ++
Sbjct: 280 LVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG 339
Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
P++ TFN +I + L G+A + +KM P+ ++Y + ++G+C + R
Sbjct: 340 FSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPL--LHGFCKEKKMDR 397
Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
A E + + G + T N ML A C +G +A + + G +P TY +
Sbjct: 398 AIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVID 457
Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTD 356
KA KLL M + P+ + SSL G S K D
Sbjct: 458 GLAKAGKTGKAIKLLDEMRAKDLKPDTITY--------SSLVGGLSREGKVD 501
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 139/325 (42%), Gaps = 5/325 (1%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D Y+ ++ + G+ + AM + M C PD Y LI A RD + A
Sbjct: 203 DVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEAT--CRDSG--VGHA 258
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
+ +M+ C P++VTYN+L+ + +D+ ++ S P++ T+N ++
Sbjct: 259 MKLLDEMRD-RGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILR 317
Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
+ G + E +L+ M P ++TFN+LI+ ++ + + + + +P
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP 377
Query: 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249
++N ++ + K + +A ++M + P +TY ++T V A EI
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437
Query: 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309
++LS G + T N +++ G +A L + + PD+ TY L ++
Sbjct: 438 NQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSRE 497
Query: 310 NMKELVQKLLKRMEQNGIVPNKRFF 334
+ K E+ GI PN F
Sbjct: 498 GKVDEAIKFFHEFERMGIRPNAVTF 522
Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 143/329 (43%), Gaps = 11/329 (3%)
Query: 3 KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT--- 59
+ R D Y+ L+ + K+G+ A+ ++M +SGC+P+ +N ++ + T
Sbjct: 266 RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRW 325
Query: 60 RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP 119
D K LA L KG P++VT+NIL+ + + + + +++ + P
Sbjct: 326 MDAEKLLADML-----RKGF---SPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP 377
Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
+ +YN ++ + K + L RM S C PDI+T+N ++ + K + ++
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437
Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
L P L T+N++I KA GKA + +M A P ITY ++
Sbjct: 438 NQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSRE 497
Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
V A + F E ++G T N+++ C + A N G P+ ++Y
Sbjct: 498 GKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSY 557
Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIV 328
+L + M + +LL + G++
Sbjct: 558 TILIEGLAYEGMAKEALELLNELCNKGLM 586
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 7/260 (2%)
Query: 84 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
P+I+ L+R + + + + L S PD+ TYN ++ Y K G I SV
Sbjct: 135 PDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSV 194
Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
L RM + PD++T+N ++ S + +V ++ P + T+ +I +
Sbjct: 195 LDRMSVS---PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCR 251
Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKV 261
G A + +M TP +TY ++ G C + A + +++ G V
Sbjct: 252 DSGVGHAMKLLDEMRDRGCTPDVVTYNVLVN--GICKEGRLDEAIKFLNDMPSSGCQPNV 309
Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
T N +L + C G +A+ L + G +P T+ +L + + +L++
Sbjct: 310 ITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEK 369
Query: 322 MEQNGIVPNKRFFLEALETF 341
M Q+G PN + L F
Sbjct: 370 MPQHGCQPNSLSYNPLLHGF 389
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 146/326 (44%), Gaps = 19/326 (5%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH--LHTRDKAKALA 67
D IYS +I + K G A +LFSEM G P+ YN +I A+ L
Sbjct: 295 DVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLL 354
Query: 68 KALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
+ + +ER P+++T+N L+ A + + + L E+ + PD TYN
Sbjct: 355 RDM--------IEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 406
Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
++ + K+ + + + M S PD++TFN +ID Y + + D+ Q+ + +
Sbjct: 407 MIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRG 462
Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSR 244
T+N++I + + A+ +FQ+M + P IT C I +YG+C+N +
Sbjct: 463 LVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTIT--CNILLYGFCENEKLEE 520
Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
A E+F+ + D+ N ++ C EA LF + GV PD TY ++
Sbjct: 521 ALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMIS 580
Query: 305 AYTKANMKELVQKLLKRMEQNGIVPN 330
+ + L +M+ NG P+
Sbjct: 581 GFCGKSAISDANVLFHKMKDNGHEPD 606
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/352 (26%), Positives = 168/352 (47%), Gaps = 26/352 (7%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D Y ++ M K G T+ A+ L S+M + +PD +Y+A+I +D + A+
Sbjct: 260 DVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRL--CKDGHHSDAQY 317
Query: 70 LGYFQKM--KGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNG 126
L F +M KG+ PN+ TYN ++ C+ R D L +++ E + PD+ T+N
Sbjct: 318 L--FSEMLEKGI---APNVFTYNCMIDGFCSFGRWSD-AQRLLRDMIEREINPDVLTFNA 371
Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
++ A K G + E E + M PD +T+N +I + K FD + +F LM S
Sbjct: 372 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMF-DLMAS- 429
Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSR 244
P + TFN++I Y +A+ + + ++++ + TY +I +G+C DN++
Sbjct: 430 --PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLI--HGFCEVDNLNA 485
Query: 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304
A+++F E+ G T N +L +C N EA LFE + D+ Y ++
Sbjct: 486 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIH 545
Query: 305 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTD 356
K + + L + +G+ P+ ++T++ ++G SA +D
Sbjct: 546 GMCKGSKVDEAWDLFCSLPIHGVEPD-------VQTYNVMISGFCGKSAISD 590
Score = 108 bits (269), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 142/315 (45%), Gaps = 11/315 (3%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
++ LI + +G+ A L ++M G D Y ++ D AL
Sbjct: 229 FNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSAL----NLL 284
Query: 74 QKMKGMERCKPNIVTYN-ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
KM+ KP++V Y+ I+ R C + D LF E+ E +AP+++TYN ++D +
Sbjct: 285 SKMEET-HIKPDVVIYSAIIDRLCKDGHHSD-AQYLFSEMLEKGIAPNVFTYNCMIDGFC 342
Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
G + + +L M + PD++TFN LI + K + E++ ++H P
Sbjct: 343 SFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTV 402
Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252
T+NSMI + K A+++F M +P +T+ II +Y V ++ E+
Sbjct: 403 TYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREI 458
Query: 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312
S+ G +T N ++ +C A LF+ + GV PD+ T +L + +
Sbjct: 459 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 518
Query: 313 ELVQKLLKRMEQNGI 327
E +L + ++ + I
Sbjct: 519 EEALELFEVIQMSKI 533
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 133/327 (40%), Gaps = 52/327 (15%)
Query: 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL-HTR-D 61
+R D ++ LI+ K+G+ A L EM + PD YN++I H R D
Sbjct: 359 EREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFD 418
Query: 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
AK + + P++VT+N ++ +A+ VD+ L +E+ L +
Sbjct: 419 DAKHMFDLMA-----------SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANT 467
Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
TYN ++ + + + + + M S+ PD IT N+L+ + + + ++ ++F+
Sbjct: 468 TTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEV 527
Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC-- 239
+ SK +N I ++G C
Sbjct: 528 IQMSKIDLDTVAYN-------------------------------------IIIHGMCKG 550
Query: 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299
V A ++F L G + V T N M+ +C ++A++LF + G PD+STY
Sbjct: 551 SKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTY 610
Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNG 326
L + KA + +L+ M NG
Sbjct: 611 NTLIRGCLKAGEIDKSIELISEMRSNG 637
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 142/331 (42%), Gaps = 24/331 (7%)
Query: 15 SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 74
+K+I V + + +A+ L+ +M + +N LI L+ +L F
Sbjct: 110 NKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFC----DCHKLSFSLSTFG 165
Query: 75 KMKGMERCKPNIVTYNILLRA-CAQARNVD--------------QVNALFKELHESILAP 119
K+ + +P++VT+N LL C + R + + ALF ++ E L P
Sbjct: 166 KLTKLGF-QPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTP 224
Query: 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179
+ T+N +++ G + E +++++M D++T+ +++ K +
Sbjct: 225 VVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLL 284
Query: 180 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239
+ + KP + ++++I K A+Y+F +M P+ TY C+I G+C
Sbjct: 285 SKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMID--GFC 342
Query: 240 D--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
S A+ + ++ + + V T NA++ A G EA+ L + + + PD+
Sbjct: 343 SFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTV 402
Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
TY + + K N + + + M +V
Sbjct: 403 TYNSMIYGFCKHNRFDDAKHMFDLMASPDVV 433
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/265 (20%), Positives = 104/265 (39%), Gaps = 27/265 (10%)
Query: 69 ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
A+ ++KM+ + R NI ++NIL++ + + F +L + PD+ T+N ++
Sbjct: 125 AISLYRKME-IRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLL 183
Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
C D I+ L + Y F + +F ++
Sbjct: 184 HGL--------------------CLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLT 223
Query: 189 PTLPTFNSMIINYGKARLQGK---AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245
P + TFN++I L+G+ A + KM +TY I+ + A
Sbjct: 224 PVVITFNTLI---NGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSA 280
Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
+ ++ + V +A+++ C +G ++A LF G+ P+ TY +
Sbjct: 281 LNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDG 340
Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
+ Q+LL+ M + I P+
Sbjct: 341 FCSFGRWSDAQRLLRDMIEREINPD 365
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
DT Y+ +I M K + A LF + G PD YN +I+ A++ A
Sbjct: 536 DTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFC----GKSAISDA 591
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
F KMK +P+ TYN L+R C +A +D+ L E+ + + D +T V D
Sbjct: 592 NVLFHKMKDNGH-EPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD 650
Query: 130 AYGKNGMIKEMESVLS 145
+ K +LS
Sbjct: 651 LITDGRLDKSFSDMLS 666
Score = 35.0 bits (79), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 50/115 (43%)
Query: 170 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229
++ D F ++ S+ T N +I + + A +++KM + + ++
Sbjct: 85 KSLDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSF 144
Query: 230 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 284
+I + C +S + F +L+KLG V T N +L C+ +EA LF
Sbjct: 145 NILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALF 199
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 146/332 (43%), Gaps = 29/332 (8%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNAL------------------ITA 55
Y+ L+ V+ K A+ +FS M +GCRP+ Y+ L I+
Sbjct: 308 YNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISK 367
Query: 56 HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI----------LLRACAQARNVDQV 105
T+ L + L + R ++ ++ + L C + ++ +
Sbjct: 368 RYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAI 427
Query: 106 NALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165
L K +HE + D YN V A GK I + + +MK + PDI T+N+LI S
Sbjct: 428 EMLSK-IHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIAS 486
Query: 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225
+G+ D+ +F+ L S KP + ++NS+I GK +A F++M P
Sbjct: 487 FGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPD 546
Query: 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285
+TY ++ +G + V A +F+E+ G + T N +L+ NG EA L+
Sbjct: 547 VVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYS 606
Query: 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317
G+TPDS TY +L + + ++ K +++
Sbjct: 607 KMKQQGLTPDSITYTVLERLQSVSHGKSRIRR 638
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 110/210 (52%), Gaps = 9/210 (4%)
Query: 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
++ + DT +Y+ + + +GK Q LF +M+ G PD YN LI + +
Sbjct: 435 EKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASF----GRV 490
Query: 64 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
+ +A+ F++++ + CKP+I++YN L+ + +VD+ + FKE+ E L PD+ T
Sbjct: 491 GEVDEAINIFEELERSD-CKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVT 549
Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183
Y+ +M+ +GK ++ S+ M C+P+I+T+N+L+D K + ++ +
Sbjct: 550 YSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMK 609
Query: 184 HSKEKPTLPTFNSM----IINYGKARLQGK 209
P T+ + +++GK+R++ K
Sbjct: 610 QQGLTPDSITYTVLERLQSVSHGKSRIRRK 639
Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 145/330 (43%), Gaps = 12/330 (3%)
Query: 3 KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
K+R D Y+ +I MG+ G+ A+ LF+EM G + YN L + K
Sbjct: 262 KKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTL----MQVLAK 317
Query: 63 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
K + KA+ F +M C+PN TY++LL + +++ + E+ + + IY
Sbjct: 318 GKMVDKAIQVFSRMVETG-CRPNEYTYSLLLNLLVAEGQLVRLDGVV-EISKRYMTQGIY 375
Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY-GKRQAFDKMEQVFKS 181
+Y ++ K G + E + M S K + ++ +++S G + + +E + K
Sbjct: 376 SY--LVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSK- 432
Query: 182 LMHSKEKPT-LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240
+H K T +N++ GK + +F+KM +P TY +I +G
Sbjct: 433 -IHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVG 491
Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300
V A IF+EL + + + N+++ NG EA + F+ G+ PD TY
Sbjct: 492 EVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYS 551
Query: 301 LLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
L + + K E+ L + M G PN
Sbjct: 552 TLMECFGKTERVEMAYSLFEEMLVKGCQPN 581
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/325 (20%), Positives = 134/325 (41%), Gaps = 46/325 (14%)
Query: 47 SVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC---------KPNIVTYNILLRACA 97
S+ ++++ +++H + +G+F + ++ C K N TY LL+A
Sbjct: 157 SILDSMVKSNVH--GNISTVNILIGFFGNTEDLQMCLRLVKKWDLKMNSFTYKCLLQAYL 214
Query: 98 QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
++R+ + ++ E+ DI+ YN ++DA K+ ++ V MK C+ D
Sbjct: 215 RSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDALAKD---EKACQVFEDMKKRHCRRDEY 271
Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217
T+ ++I + G+ D+ +F ++ + +N+++ K ++ KA VF +M
Sbjct: 272 TYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRM 331
Query: 218 TAMKYTPSFITYECIITM-------------------------YGY-------CDNVSRA 245
P+ TY ++ + Y Y +VS A
Sbjct: 332 VETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQGIYSYLVRTLSKLGHVSEA 391
Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
+F ++ + + +MLE+ C G EA + H GV D+ Y ++ A
Sbjct: 392 HRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSA 451
Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
K + L ++M+++G P+
Sbjct: 452 LGKLKQISHIHDLFEKMKKDGPSPD 476
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 75/347 (21%), Positives = 137/347 (39%), Gaps = 40/347 (11%)
Query: 30 AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
A ++ E+R G + D YN L+ A +D+ KA F+ MK C+ + TY
Sbjct: 222 AFDVYCEIRRGGHKLDIFAYNMLLDAL--AKDE-----KACQVFEDMKK-RHCRRDEYTY 273
Query: 90 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
I++R + D+ LF E+ L ++ YN +M K M+ + V SRM
Sbjct: 274 TIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVE 333
Query: 150 NQCKPDIITFNLLID---SYGKRQAFDKMEQVFKSLM----------------HSKEKPT 190
C+P+ T++LL++ + G+ D + ++ K M H E
Sbjct: 334 TGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQGIYSYLVRTLSKLGHVSEAHR 393
Query: 191 L-------------PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237
L ++ SM+ + A +A + K+ + Y + + G
Sbjct: 394 LFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALG 453
Query: 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297
+S ++F+++ K G + T N ++ ++ G EA +FE PD
Sbjct: 454 KLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDII 513
Query: 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
+Y L K + K M++ G+ P+ + +E F +
Sbjct: 514 SYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKT 560
Score = 32.0 bits (71), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 41/215 (19%), Positives = 84/215 (39%), Gaps = 9/215 (4%)
Query: 120 DIYTYNGVMDAYGKNGM---IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176
D + YN ++ ++ + + S+L M + +I T N+LI +G + ++
Sbjct: 132 DPFLYNRIILILSRSNLPDRFDRVRSILDSMVKSNVHGNISTVNILIGFFGNTE---DLQ 188
Query: 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236
+ + K T+ ++ Y ++R KA V+ ++ + Y ++
Sbjct: 189 MCLRLVKKWDLKMNSFTYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDAL 248
Query: 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296
+A ++F+++ K T M+ G EA LF G+T +
Sbjct: 249 A---KDEKACQVFEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNV 305
Query: 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
Y L + K M + ++ RM + G PN+
Sbjct: 306 VGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNE 340
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 148/330 (44%), Gaps = 10/330 (3%)
Query: 13 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
IY+ LI KKG+ A LF EM G + Y LI K +
Sbjct: 200 IYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFE----M 255
Query: 73 FQKMKGMERCKPNIVTYNILL-RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
++KM+ + PN+ TYN ++ + C R D +F E+ E ++ +I TYN ++
Sbjct: 256 YEKMQE-DGVFPNLYTYNCVMNQLCKDGRTKDAFQ-VFDEMRERGVSCNIVTYNTLIGGL 313
Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
+ + E V+ +MKS+ P++IT+N LID + K + + L P+L
Sbjct: 314 CREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSL 373
Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
T+N ++ + + A + ++M PS +TY +I + DN+ +A ++
Sbjct: 374 VTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLS 433
Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
+ +LG V T + ++ +C+ G EA LF++ P+ Y + Y K
Sbjct: 434 MEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGS 493
Query: 312 KELVQKLLKRMEQNGIVPNK---RFFLEAL 338
KLLK ME+ + PN R+ +E L
Sbjct: 494 SYRALKLLKEMEEKELAPNVASYRYMIEVL 523
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 133/294 (45%), Gaps = 9/294 (3%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
Y+ ++ + K G+T+ A +F EMR G + YN LI + L +A
Sbjct: 271 YNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLC----REMKLNEANKVV 326
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
+MK + PN++TYN L+ + + +L ++L L+P + TYN ++ + +
Sbjct: 327 DQMKS-DGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCR 385
Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
G ++ M+ KP +T+ +LID++ + +K Q+ S+ P + T
Sbjct: 386 KGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHT 445
Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS--RAREIFDE 251
++ +I + +A +F+ M P+ + Y +I GYC S RA ++ E
Sbjct: 446 YSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMI--LGYCKEGSSYRALKLLKE 503
Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
+ + V++ M+E C EA+ L E + G+ P +S L+ +A
Sbjct: 504 MEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLISRA 557
Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/334 (21%), Positives = 154/334 (46%), Gaps = 10/334 (2%)
Query: 13 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGY 72
+Y +I + L++ F+EM ++G P + +N L+T + + + + +
Sbjct: 96 LYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVV----GSSSFNQWWSF 151
Query: 73 FQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG 132
F + K + ++ ++ IL++ C +A +++ L EL E +P++ Y ++D
Sbjct: 152 FNENKS--KVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCC 209
Query: 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192
K G I++ + + M + T+ +LI+ K + ++++ + P L
Sbjct: 210 KKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLY 269
Query: 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFD 250
T+N ++ K A VF +M + + +TY +I G C ++ A ++ D
Sbjct: 270 TYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIG--GLCREMKLNEANKVVD 327
Query: 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310
++ G + + T N +++ +C G +A L + + G++P TY +L + +
Sbjct: 328 QMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKG 387
Query: 311 MKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344
K++K ME+ GI P+K + ++TF+ S
Sbjct: 388 DTSGAAKMVKEMEERGIKPSKVTYTILIDTFARS 421
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/366 (24%), Positives = 161/366 (43%), Gaps = 51/366 (13%)
Query: 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
QR D Y ++ + K+G LA+ L ++M + + + ++N +I + K
Sbjct: 216 QRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLC----KY 271
Query: 64 KALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
+ + A+ F +M KG+ +PN+VTYN L+ + L + E + P++
Sbjct: 272 RHVEVAVDLFTEMETKGI---RPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNV 328
Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
T+N ++DA+ K G + E E + M PD IT+NLLI+ + D+ +Q+FK
Sbjct: 329 VTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKF 388
Query: 182 LMHSKEKPTLPTFNSMIINYGKAR---------------------------LQG------ 208
++ P + T+N++I + K + +QG
Sbjct: 389 MVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGD 448
Query: 209 --KAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTL 264
A+ VF++M + + +TY I ++G C + A IF L K ++ +
Sbjct: 449 CDSAQMVFKQMVSNRVPTDIMTYS--ILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIY 506
Query: 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324
N M+E C G EA LF ++ + PD TY + + + L ++M++
Sbjct: 507 NTMIEGMCKAGKVGEAWDLF---CSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKE 563
Query: 325 NGIVPN 330
+G +PN
Sbjct: 564 DGTLPN 569
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 150/329 (45%), Gaps = 10/329 (3%)
Query: 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 66
Y DT ++ LI + + A+ L +M GC+PD Y ++ D +
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD----I 239
Query: 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126
AL KM+ R K N+V +N ++ + + R+V+ LF E+ + P++ TYN
Sbjct: 240 DLALNLLNKMEA-ARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNS 298
Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186
+++ G + +LS M + P+++TFN LID++ K + E++ + ++
Sbjct: 299 LINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRS 358
Query: 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
P T+N +I + +A+ +F+ M + P+ TY +I + C V
Sbjct: 359 IDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGV 418
Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK-- 304
E+F E+S+ G T +++ + G A ++F+ + V D TY +L
Sbjct: 419 ELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGL 478
Query: 305 -AYTKANMKELVQKLLKR--MEQNGIVPN 330
+Y K + ++ K L++ ME N + N
Sbjct: 479 CSYGKLDTALVIFKYLQKSEMELNIFIYN 507
Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 150/335 (44%), Gaps = 11/335 (3%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 69
D YS I ++ Q LA+ + ++M G PD ++L+ + H+ K ++ A
Sbjct: 117 DLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHS----KRISDA 172
Query: 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129
+ +M M KP+ T+ L+ + AL ++ + PD+ TY V++
Sbjct: 173 VALVDQMVEMGY-KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVN 231
Query: 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189
K G I ++L++M++ + K +++ FN +IDS K + + +F + +P
Sbjct: 232 GLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRP 291
Query: 190 TLPTFNSMI---INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246
+ T+NS+I NYG+ A + M K P+ +T+ +I + + A
Sbjct: 292 NVVTYNSLINCLCNYGR---WSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAE 348
Query: 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306
++ +E+ + D T N ++ +CM+ EA +F+ + P+ TY L +
Sbjct: 349 KLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGF 408
Query: 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341
K E +L + M Q G+V N + ++ F
Sbjct: 409 CKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGF 443
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 139/317 (43%), Gaps = 5/317 (1%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
++KL++ + K + L + L +M+ G D Y+ I + L+ AL
Sbjct: 86 FNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFC----RRSQLSLALAVL 141
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
KM + +P+IVT + LL ++ + AL ++ E PD +T+ ++
Sbjct: 142 AKMMKLGY-EPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200
Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
+ E +++ +M C+PD++T+ +++ KR D + + ++ K +
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVI 260
Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
FN++I + K R A +F +M P+ +TY +I S A + +
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNML 320
Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
+ + V T NA+++A+ G EA+ L E + PD+ TY LL + N +
Sbjct: 321 EKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLD 380
Query: 314 LVQKLLKRMEQNGIVPN 330
+++ K M +PN
Sbjct: 381 EAKQMFKFMVSKDCLPN 397
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 108/260 (41%), Gaps = 4/260 (1%)
Query: 84 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
P+IV +N LL A A+ + V +L +++ ++ D+YTY+ ++ + + + +V
Sbjct: 81 PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140
Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
L++M +PDI+T + L++ Y + + ++ KP TF ++I
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200
Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKV 261
+A + +M P +TY ++ G C ++ A + +++ V
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVN--GLCKRGDIDLALNLLNKMEAARIKANV 258
Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
N ++++ C A LF G+ P+ TY L +LL
Sbjct: 259 VIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSN 318
Query: 322 MEQNGIVPNKRFFLEALETF 341
M + I PN F ++ F
Sbjct: 319 MLEKKINPNVVTFNALIDAF 338
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/361 (22%), Positives = 154/361 (42%), Gaps = 53/361 (14%)
Query: 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT---RDKAKAL 66
D +Y+ +I + K G A+ LF +M N G RPD +Y +L+ ++ RD L
Sbjct: 176 DVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLL 235
Query: 67 AKALGYFQKMKGM--ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124
+GM + KP+++T+N L+ A + L+ E+ +AP+I+TY
Sbjct: 236 ----------RGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTY 285
Query: 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184
+++ + G + E + M++ C PD++ + LI+ + K + D ++F +
Sbjct: 286 TSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQ 345
Query: 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244
T+ ++I +G+ A+ VF M + P+ TY ++ Y V +
Sbjct: 346 KGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKK 405
Query: 245 AREIFDELSKL---GKDMKVSTLNAMLEAYCMNGLPTEADLLFE---------------- 285
A IF+++ K G + T N +L C NG +A ++FE
Sbjct: 406 ALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTI 465
Query: 286 ------------NSHNM-------GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
N+ N+ GV P+ TY + + +K L ++M+++G
Sbjct: 466 IIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDG 525
Query: 327 I 327
+
Sbjct: 526 V 526
Score = 108 bits (269), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 142/317 (44%), Gaps = 8/317 (2%)
Query: 17 LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76
L+ + Q LA +M G PD + +LI + +A+ +M
Sbjct: 113 LMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFC----LGNRMEEAMSMVNQM 168
Query: 77 KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136
M KP++V Y ++ + + +V+ +LF ++ + PD+ Y +++ +G
Sbjct: 169 VEMG-IKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGR 227
Query: 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 196
++ +S+L M + KPD+ITFN LID++ K F E+++ ++ P + T+ S
Sbjct: 228 WRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTS 287
Query: 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256
+I + +A +F M P + Y +I + C V A +IF E+S+ G
Sbjct: 288 LINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKG 347
Query: 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT---KANMKE 313
T +++ + G P A +F + + GV P+ TY +L K
Sbjct: 348 LTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKAL 407
Query: 314 LVQKLLKRMEQNGIVPN 330
++ + +++ E +G+ PN
Sbjct: 408 MIFEDMQKREMDGVAPN 424
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 144/321 (44%), Gaps = 9/321 (2%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
++KL+ V+ K + + + L ++ G D N L+ + A + LG
Sbjct: 75 FTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLA-SSFLGKM 133
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
K+ G E P+IVT+ L+ +++ ++ ++ E + PD+ Y ++D+ K
Sbjct: 134 MKL-GFE---PDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCK 189
Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
NG + S+ +M++ +PD++ + L++ + + + + + K KP + T
Sbjct: 190 NGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVIT 249
Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDE 251
FN++I + K AE ++ +M M P+ TY +I G+C V AR++F
Sbjct: 250 FNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLIN--GFCMEGCVDEARQMFYL 307
Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
+ G V +++ +C +A +F G+T ++ TY L + + +
Sbjct: 308 METKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGK 367
Query: 312 KELVQKLLKRMEQNGIVPNKR 332
+ Q++ M G+ PN R
Sbjct: 368 PNVAQEVFSHMVSRGVPPNIR 388
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 136/316 (43%), Gaps = 11/316 (3%)
Query: 30 AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89
A+ LF+ M S RP PS+ + T L+ K K + ++ M ++ T
Sbjct: 56 ALDLFTHMVES--RPLPSIID--FTKLLNVIAKMKKFDVVINLCDHLQIMG-VSHDLYTC 110
Query: 90 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149
N+L+ Q+ ++ ++ + PDI T+ +++ + ++E S++++M
Sbjct: 111 NLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVE 170
Query: 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI---INYGKARL 206
KPD++ + +IDS K + +F + + +P + + S++ N G+ R
Sbjct: 171 MGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWR- 229
Query: 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266
A+ + + MT K P IT+ +I + A E+++E+ ++ + T +
Sbjct: 230 --DADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTS 287
Query: 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326
++ +CM G EA +F G PD Y L + K + K+ M Q G
Sbjct: 288 LINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKG 347
Query: 327 IVPNKRFFLEALETFS 342
+ N + ++ F
Sbjct: 348 LTGNTITYTTLIQGFG 363
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 6/162 (3%)
Query: 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
Q+ +T Y+ LI G+ G+ +A +FS M + G P+ YN L LH
Sbjct: 345 QKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVL----LHCLCYN 400
Query: 64 KALAKALGYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI 121
+ KAL F+ M + M+ PNI TYN+LL +++ +F+++ + + I
Sbjct: 401 GKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGI 460
Query: 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163
TY ++ K G +K ++ + S KP+++T+ +I
Sbjct: 461 ITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMI 502
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 94/242 (38%)
Query: 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
Y +LR + ++ LF + ES P I + +++ K + ++ ++
Sbjct: 40 YREILRNGLHSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQ 99
Query: 149 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208
D+ T NLL++ + + +M +P + TF S+I +
Sbjct: 100 IMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRME 159
Query: 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268
+A + +M M P + Y II +V+ A +FD++ G V +++
Sbjct: 160 EAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLV 219
Query: 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 328
C +G +AD L + PD T+ L A+ K ++L M + I
Sbjct: 220 NGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIA 279
Query: 329 PN 330
PN
Sbjct: 280 PN 281
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 143/327 (43%), Gaps = 9/327 (2%)
Query: 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
+ D Y+ LI K+G LA+ + +MRN GC+P+ Y L+ K +
Sbjct: 386 VPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFC----KLGKID 441
Query: 68 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 127
+A +M + KPN V +N L+ A + + + +F+E+ PD+YT+N +
Sbjct: 442 EAYNVLNEMSA-DGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 500
Query: 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 187
+ + IK +L M S + +T+N LI+++ +R + ++ ++
Sbjct: 501 ISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGS 560
Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRA 245
T+NS+I +A KA +F+KM + PS I+ C I + G C + V A
Sbjct: 561 PLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNIS--CNILINGLCRSGMVEEA 618
Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
E E+ G + T N+++ C G + +F G+ PD+ T+ L
Sbjct: 619 VEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSW 678
Query: 306 YTKANMKELVQKLLKRMEQNGIVPNKR 332
K LL ++G VPN R
Sbjct: 679 LCKGGFVYDACLLLDEGIEDGFVPNHR 705
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/351 (23%), Positives = 142/351 (40%), Gaps = 29/351 (8%)
Query: 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
+ ++ IY LI + K + A+ L EM GC PD +N +I L D+ A
Sbjct: 249 VPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILG-LCKFDRINEAA 307
Query: 68 KALG-------------YFQKMKGMERC--------------KPNIVTYNILLRACAQAR 100
K + Y M G+ + KP IV +N L+
Sbjct: 308 KMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHG 367
Query: 101 NVDQVNALFKELHESI-LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 159
+D A+ ++ S + PD+ TYN ++ Y K G++ VL M++ CKP++ ++
Sbjct: 368 RLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSY 427
Query: 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219
+L+D + K D+ V + KP FN +I + K +A +F++M
Sbjct: 428 TILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPR 487
Query: 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279
P T+ +I+ D + A + ++ G T N ++ A+ G E
Sbjct: 488 KGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKE 547
Query: 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
A L G D TY L K +A + + L ++M ++G P+
Sbjct: 548 ARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPS 598
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 132/297 (44%), Gaps = 11/297 (3%)
Query: 13 IYSKLIAVMG--KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKAL 70
+YS I V G K G+ A + +EM G +P+ +N LI+A K + +A+
Sbjct: 424 VYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFC----KEHRIPEAV 479
Query: 71 GYFQKM--KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 128
F++M KG CKP++ T+N L+ + + L +++ + + TYN ++
Sbjct: 480 EIFREMPRKG---CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLI 536
Query: 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 188
+A+ + G IKE +++ M D IT+N LI + DK +F+ ++
Sbjct: 537 NAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHA 596
Query: 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248
P+ + N +I ++ + +A ++M TP +T+ +I + +
Sbjct: 597 PSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTM 656
Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
F +L G T N ++ C G +A LL + G P+ T+ +L ++
Sbjct: 657 FRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQS 713
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 142/331 (42%), Gaps = 15/331 (4%)
Query: 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
Q Y +Y LI +G G+ + L +M++ G S++ +++ + DKA
Sbjct: 104 QNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDY----DKA 159
Query: 64 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNA-LFKELHESILAPDIY 122
+ +M+ + C+P +YN++L N +V A +F ++ + P ++
Sbjct: 160 GFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSG-NCHKVAANVFYDMLSRKIPPTLF 218
Query: 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182
T+ VM A+ I S+L M + C P+ + + LI S K ++ Q+ + +
Sbjct: 219 TFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEM 278
Query: 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--D 240
P TFN +I+ K +A + +M + P ITY + M G C
Sbjct: 279 FLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYL--MNGLCKIG 336
Query: 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD-LLFENSHNMGVTPDSSTY 299
V A+++F + K ++ N ++ + +G +A +L + + G+ PD TY
Sbjct: 337 RVDAAKDLFYRIPK----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTY 392
Query: 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
L Y K + L ++L M G PN
Sbjct: 393 NSLIYGYWKEGLVGLALEVLHDMRNKGCKPN 423
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 30/197 (15%)
Query: 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR--DKAKA 65
+A+T Y+ LI ++G+ + A L +EM G D YN+LI DKA++
Sbjct: 526 VANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARS 585
Query: 66 LAKAL---GY-------------------------FQKMKGMERCKPNIVTYNILLRACA 97
L + + G+ FQK + P+IVT+N L+
Sbjct: 586 LFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLC 645
Query: 98 QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157
+A ++ +F++L + PD T+N +M K G + + +L + P+
Sbjct: 646 RAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHR 705
Query: 158 TFNLLIDSYGKRQAFDK 174
T+++L+ S ++ D+
Sbjct: 706 TWSILLQSIIPQETLDR 722
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 84/196 (42%), Gaps = 18/196 (9%)
Query: 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL---PTFNSMIINYGKARLQGKAEYVF 214
+ +LI G F ++++ L+ K++ + F S++ +Y KA G+ +
Sbjct: 113 VYQVLIGKLGANGEFKTIDRL---LIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLM 169
Query: 215 QKM-TAMKYTPSFITYECI--ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271
+M P+F +Y + I + G C V+ A +D LS+ + T +++A+
Sbjct: 170 LEMRNVYSCEPTFKSYNVVLEILVSGNCHKVA-ANVFYDMLSR-KIPPTLFTFGVVMKAF 227
Query: 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331
C A L + G P+S Y+ L + +K N +LL+ M G VP+
Sbjct: 228 CAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDA 287
Query: 332 RFFLEALETFSSSLAG 347
ETF+ + G
Sbjct: 288 -------ETFNDVILG 296
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 163/357 (45%), Gaps = 50/357 (14%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
Y ++ + K+G LA L ++M + D ++N +I + K + + AL F
Sbjct: 153 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLC----KYRHVDDALNLF 208
Query: 74 QKM--KGMERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
++M KG+ +PN+VTY+ L+ C+ R D + L ++ E + P++ T+N ++DA
Sbjct: 209 KEMETKGI---RPNVVTYSSLISCLCSYGRWSD-ASQLLSDMIEKKINPNLVTFNALIDA 264
Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 190
+ K G E E + M PDI T+N LI+ + DK +Q+F+ ++ P
Sbjct: 265 FVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPD 324
Query: 191 LPTFNSMIINYGKAR---------------------------LQG--------KAEYVFQ 215
L T+N++I + K++ +QG A+ VF+
Sbjct: 325 LDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 384
Query: 216 KMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273
+M + P +TY I + G C+N + +A E+FD + K + + M+E C
Sbjct: 385 QMVSDGVPPDIMTYS--ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 442
Query: 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
G + LF + GV P+ TY + + + LLK+M+++G +P+
Sbjct: 443 AGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPD 499
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 145/305 (47%), Gaps = 13/305 (4%)
Query: 30 AMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CKPNIVT 88
A+ L +M G RPD + LI L +KA ++A+ +M ++R C+PN+VT
Sbjct: 99 AVALVDQMVEMGYRPDTITFTTLIHG-LFLHNKA---SEAVALVDRM--VQRGCQPNLVT 152
Query: 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148
Y +++ + ++D L ++ + + D+ +N ++D+ K + + ++ M+
Sbjct: 153 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEME 212
Query: 149 SNQCKPDIITFNLLID---SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205
+ +P+++T++ LI SYG+ + Q+ ++ K P L TFN++I + K
Sbjct: 213 TKGIRPNVVTYSSLISCLCSYGR---WSDASQLLSDMIEKKINPNLVTFNALIDAFVKEG 269
Query: 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265
+AE + M P TY +I + D + +A+++F+ + + T N
Sbjct: 270 KFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYN 329
Query: 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325
+++ +C + + LF + G+ D+ TY L + + QK+ K+M +
Sbjct: 330 TLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD 389
Query: 326 GIVPN 330
G+ P+
Sbjct: 390 GVPPD 394
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/349 (22%), Positives = 153/349 (43%), Gaps = 9/349 (2%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
++KL++ + K + L + L +M+ G + YN LI + ALA LG
Sbjct: 13 FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA-LLGKM 71
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
K+ G E P+IVT + LL + + AL ++ E PD T+ ++
Sbjct: 72 MKL-GYE---PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127
Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
+ E +++ RM C+P+++T+ ++++ KR D + + +K + +
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187
Query: 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253
FN++I + K R A +F++M P+ +TY +I+ S A ++ ++
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247
Query: 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313
+ + + T NA+++A+ G EA+ L ++ + PD TY L + + +
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307
Query: 314 LVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRSLS 362
+++ + M P+ L+ T S+ T+L R +S
Sbjct: 308 KAKQMFEFMVSKDCFPD----LDTYNTLIKGFCKSKRVEDGTELFREMS 352
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 129/311 (41%), Gaps = 44/311 (14%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH-LHTR-DKAKALAKALG 71
++ LI K+G+ A L +M PD YN+LI +H R DKAK +
Sbjct: 258 FNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM----- 312
Query: 72 YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 131
F+ M + C P++ TYN L++ +++ V+ LF+E+ L D TY ++
Sbjct: 313 -FEFMVSKD-CFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 370
Query: 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 191
+G + V +M S+ PDI+T+++L+D +K +VF + S+ K +
Sbjct: 371 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI 430
Query: 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251
+ +MI KA GK V ++F
Sbjct: 431 YIYTTMIEGMCKA---GK--------------------------------VDDGWDLFCS 455
Query: 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311
LS G V T N M+ C L EA L + G PDS TY L +A+ +
Sbjct: 456 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGD 515
Query: 312 KELVQKLLKRM 322
K +L++ M
Sbjct: 516 KAASAELIREM 526
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 111/260 (42%), Gaps = 4/260 (1%)
Query: 84 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143
P+I +N LL A A+ + D V +L +++ ++ ++YTYN +++ + + I ++
Sbjct: 8 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203
L +M +P I+T + L++ Y + + ++ +P TF ++I
Sbjct: 68 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127
Query: 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--DNVSRAREIFDELSKLGKDMKV 261
+A + +M P+ +TY ++ G C ++ A + +++ + V
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVN--GLCKRGDIDLAFNLLNKMEAAKIEADV 185
Query: 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321
N ++++ C +A LF+ G+ P+ TY L +LL
Sbjct: 186 VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSD 245
Query: 322 MEQNGIVPNKRFFLEALETF 341
M + I PN F ++ F
Sbjct: 246 MIEKKINPNLVTFNALIDAF 265
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 5/163 (3%)
Query: 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 63
R + DT Y+ LI + G A +F +M + G PD Y+ L+ +
Sbjct: 353 HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 412
Query: 64 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123
KAL + Y QK K +I Y ++ +A VD LF L + P++ T
Sbjct: 413 KAL-EVFDYMQK----SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVT 467
Query: 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166
YN ++ +++E ++L +MK + PD T+N LI ++
Sbjct: 468 YNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAH 510
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 66/149 (44%)
Query: 182 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241
++ S+ P++ FN ++ K + + +KM + + + TY +I +
Sbjct: 1 MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60
Query: 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301
+S A + ++ KLG + + TL+++L YC ++A L + MG PD+ T+
Sbjct: 61 ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 120
Query: 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN 330
L N L+ RM Q G PN
Sbjct: 121 LIHGLFLHNKASEAVALVDRMVQRGCQPN 149
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 115 bits (287), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 150/316 (47%), Gaps = 13/316 (4%)
Query: 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 73
++ +I + K G+ A + +M+ GC P+ YN LI + K + KA
Sbjct: 226 FNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGK-MYKADAVL 284
Query: 74 QKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133
++M + PN+ T+NIL+ + N+ +FKE+ + + P++ +YN +++
Sbjct: 285 KEMVEND-VSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCN 343
Query: 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193
G I E S+ +M S +P++IT+N LI+ + K + +F S+ PT
Sbjct: 344 GGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRM 403
Query: 194 FNSMIINYGKARLQGKAEYVF---QKMTAMKYTPSFITYECIITMYGYC--DNVSRAREI 248
+N +I Y K GK + F ++M P TY C+I G C N+ A+++
Sbjct: 404 YNMLIDAYCKL---GKIDDGFALKEEMEREGIVPDVGTYNCLIA--GLCRNGNIEAAKKL 458
Query: 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308
FD+L+ G + T + ++E YC G +A +L + MG+ P TY ++ K Y K
Sbjct: 459 FDQLTSKGLP-DLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCK 517
Query: 309 ANMKELVQKLLKRMEQ 324
+ + +ME+
Sbjct: 518 EGNLKAATNMRTQMEK 533
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 128/265 (48%), Gaps = 14/265 (5%)
Query: 71 GYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130
GY+ CKP +++ + R+ D V ++KE+ + P+++T+N V++A
Sbjct: 180 GYYGYKLSALSCKP------LMIALLKENRSAD-VEYVYKEMIRRKIQPNVFTFNVVINA 232
Query: 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM---EQVFKSLMHSKE 187
K G + + V+ MK C P+++++N LID Y K KM + V K ++ +
Sbjct: 233 LCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDV 292
Query: 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRA 245
P L TFN +I + K + VF++M P+ I+Y +I G C+ +S A
Sbjct: 293 SPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLIN--GLCNGGKISEA 350
Query: 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305
+ D++ G + T NA++ +C N + EA +F + G P + Y +L A
Sbjct: 351 ISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDA 410
Query: 306 YTKANMKELVQKLLKRMEQNGIVPN 330
Y K + L + ME+ GIVP+
Sbjct: 411 YCKLGKIDDGFALKEEMEREGIVPD 435
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 120/252 (47%), Gaps = 7/252 (2%)
Query: 81 RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY---GKNGMI 137
+ +PN+ T+N+++ A + +++ + +++ +P++ +YN ++D Y G NG +
Sbjct: 218 KIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKM 277
Query: 138 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 197
+ ++VL M N P++ TFN+LID + K +VFK ++ KP + ++NS+
Sbjct: 278 YKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSL 337
Query: 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKL 255
I +A + KM + P+ ITY +I G+C N + A ++F +
Sbjct: 338 INGLCNGGKISEAISMRDKMVSAGVQPNLITYNALIN--GFCKNDMLKEALDMFGSVKGQ 395
Query: 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315
G N +++AYC G + L E G+ PD TY L + E
Sbjct: 396 GAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAA 455
Query: 316 QKLLKRMEQNGI 327
+KL ++ G+
Sbjct: 456 KKLFDQLTSKGL 467
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 98/227 (43%), Gaps = 6/227 (2%)
Query: 109 FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS--RMKSNQCKPDIITFNLLIDSY 166
FK LH A +D + +NG ++ S+ M N C II ++L+ +Y
Sbjct: 105 FKLLHSLANAKRYSKIRSFLDGFVRNGSDHQVHSIFHAISMCDNVCVNSIIA-DMLVLAY 163
Query: 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 226
F+ + FK + K + + ++I K EYV+++M K P+
Sbjct: 164 ANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNV 223
Query: 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM---NGLPTEADLL 283
T+ +I +++AR++ +++ G V + N +++ YC NG +AD +
Sbjct: 224 FTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAV 283
Query: 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330
+ V+P+ +T+ +L + K + K+ K M + PN
Sbjct: 284 LKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPN 330
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 7/193 (3%)
Query: 3 KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 62
K + + T +Y+ LI K G+ L EM G PD YN LI R+
Sbjct: 393 KGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGL--CRNG 450
Query: 63 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122
AK L KG+ P++VT++IL+ + + L KE+ + L P
Sbjct: 451 NIEAAKKLFDQLTSKGL----PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHL 506
Query: 123 TYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181
TYN VM Y K G +K ++ ++M K + + ++ ++N+L+ Y ++ + +
Sbjct: 507 TYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNE 566
Query: 182 LMHSKEKPTLPTF 194
++ P T+
Sbjct: 567 MLEKGLVPNRITY 579
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 23 KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82
+KG++R A L EM G +P YN ++ + K L A +M+ R
Sbjct: 482 RKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYC----KEGNLKAATNMRTQMEKERRL 537
Query: 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 142
+ N+ +YN+LL+ +Q ++ N L E+ E L P+ TY V + G + ++E
Sbjct: 538 RMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDQGFVPDIEG 597
Query: 143 VL 144
L
Sbjct: 598 HL 599
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 7/156 (4%)
Query: 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 67
+ D G Y+ LIA + + G A LF ++ + G PD ++ L+ + + KA A
Sbjct: 433 VPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKA-A 490
Query: 68 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH-ESILAPDIYTYNG 126
L KM G+ KP +TYNI+++ + N+ + ++ E L ++ +YN
Sbjct: 491 MLLKEMSKM-GL---KPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNV 546
Query: 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162
++ Y + G +++ +L+ M P+ IT+ ++
Sbjct: 547 LLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIV 582
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,982,990
Number of Sequences: 539616
Number of extensions: 4924484
Number of successful extensions: 22916
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 14890
Number of HSP's gapped (non-prelim): 2885
length of query: 366
length of database: 191,569,459
effective HSP length: 119
effective length of query: 247
effective length of database: 127,355,155
effective search space: 31456723285
effective search space used: 31456723285
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)