Query 017743
Match_columns 366
No_of_seqs 649 out of 1542
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 03:02:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 4.1E-59 8.9E-64 430.4 42.4 334 9-347 435-770 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.4E-58 3.1E-63 426.8 43.9 335 3-342 464-800 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 3.3E-53 7.1E-58 388.0 33.3 328 4-348 116-479 (697)
4 PLN03081 pentatricopeptide (PP 100.0 2E-52 4.4E-57 382.8 32.6 326 4-348 151-511 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 3.3E-51 7.1E-56 383.3 34.7 332 5-350 282-644 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 2.6E-51 5.6E-56 384.0 33.6 336 8-352 149-610 (857)
7 PRK11788 tetratricopeptide rep 99.9 3E-23 6.5E-28 179.2 33.9 315 17-349 41-365 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 2.2E-21 4.7E-26 185.7 39.4 321 11-347 567-887 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 3.1E-21 6.8E-26 184.6 39.1 303 7-324 597-899 (899)
10 PRK11788 tetratricopeptide rep 99.9 8.3E-21 1.8E-25 164.0 33.1 275 62-344 47-328 (389)
11 PRK15174 Vi polysaccharide exp 99.9 3.1E-18 6.8E-23 155.4 40.3 319 11-344 76-400 (656)
12 PRK15174 Vi polysaccharide exp 99.9 3.3E-18 7.2E-23 155.2 35.7 318 15-347 46-368 (656)
13 TIGR00990 3a0801s09 mitochondr 99.8 2.2E-16 4.7E-21 143.7 40.2 88 14-109 130-217 (615)
14 TIGR00990 3a0801s09 mitochondr 99.8 6E-16 1.3E-20 140.9 39.9 255 65-324 309-570 (615)
15 KOG4422 Uncharacterized conser 99.8 5.1E-16 1.1E-20 125.3 31.0 323 12-347 117-484 (625)
16 KOG4422 Uncharacterized conser 99.8 2.5E-15 5.5E-20 121.3 32.2 307 8-325 204-551 (625)
17 KOG4626 O-linked N-acetylgluco 99.8 2.6E-16 5.6E-21 132.7 27.6 306 10-331 115-489 (966)
18 PRK11447 cellulose synthase su 99.8 7.8E-15 1.7E-19 142.2 40.8 309 10-325 302-700 (1157)
19 PRK11447 cellulose synthase su 99.8 1.1E-14 2.3E-19 141.3 37.8 310 9-330 383-746 (1157)
20 PRK10747 putative protoheme IX 99.7 2.7E-14 5.8E-19 122.6 32.3 284 24-324 97-389 (398)
21 KOG4626 O-linked N-acetylgluco 99.7 3E-15 6.5E-20 126.4 24.9 279 12-307 219-501 (966)
22 PRK10049 pgaA outer membrane p 99.7 1.1E-13 2.5E-18 128.5 37.6 309 9-331 47-426 (765)
23 PRK10049 pgaA outer membrane p 99.7 2.2E-13 4.9E-18 126.5 39.4 320 9-341 81-470 (765)
24 PRK09782 bacteriophage N4 rece 99.7 2.3E-13 5E-18 127.2 37.9 304 10-325 375-706 (987)
25 PF13429 TPR_15: Tetratricopep 99.7 7.9E-17 1.7E-21 132.2 11.9 255 62-323 20-275 (280)
26 PF13429 TPR_15: Tetratricopep 99.7 1.7E-16 3.6E-21 130.3 12.8 269 9-289 7-276 (280)
27 TIGR00540 hemY_coli hemY prote 99.7 2.1E-13 4.5E-18 117.8 32.0 289 23-324 96-398 (409)
28 PRK14574 hmsH outer membrane p 99.7 9E-12 2E-16 114.4 38.7 190 133-324 304-512 (822)
29 COG2956 Predicted N-acetylgluc 99.7 1.1E-12 2.3E-17 102.6 27.4 217 66-289 51-277 (389)
30 PRK09782 bacteriophage N4 rece 99.7 2E-12 4.3E-17 121.0 34.0 262 46-324 477-739 (987)
31 COG2956 Predicted N-acetylgluc 99.6 3.3E-12 7.2E-17 99.9 28.9 303 14-328 39-350 (389)
32 PRK10747 putative protoheme IX 99.6 1.7E-12 3.7E-17 111.5 30.3 273 63-349 97-379 (398)
33 KOG1155 Anaphase-promoting com 99.6 4.6E-12 1E-16 103.8 30.3 312 19-344 235-553 (559)
34 PRK14574 hmsH outer membrane p 99.6 1.2E-11 2.6E-16 113.6 35.4 294 19-325 42-396 (822)
35 KOG1126 DNA-binding cell divis 99.6 1.5E-12 3.3E-17 111.2 27.1 281 26-326 334-621 (638)
36 COG3071 HemY Uncharacterized e 99.6 3.2E-11 6.9E-16 97.2 33.1 287 24-325 97-390 (400)
37 KOG1126 DNA-binding cell divis 99.6 1.3E-12 2.8E-17 111.5 24.8 270 13-296 355-626 (638)
38 TIGR00540 hemY_coli hemY prote 99.6 1.6E-11 3.5E-16 106.1 32.0 282 62-350 96-389 (409)
39 KOG1155 Anaphase-promoting com 99.6 3E-11 6.6E-16 99.1 30.5 165 156-324 330-494 (559)
40 PRK12370 invasion protein regu 99.6 2.8E-11 6.1E-16 108.6 30.5 271 45-326 255-536 (553)
41 TIGR02521 type_IV_pilW type IV 99.5 2.2E-11 4.8E-16 97.4 26.4 197 124-324 34-231 (234)
42 KOG2003 TPR repeat-containing 99.5 1.1E-11 2.3E-16 101.6 24.0 207 134-347 503-710 (840)
43 KOG2003 TPR repeat-containing 99.5 3.3E-11 7.2E-16 98.8 25.0 282 19-311 427-709 (840)
44 TIGR02521 type_IV_pilW type IV 99.5 5E-11 1.1E-15 95.4 26.1 202 84-289 29-231 (234)
45 PRK12370 invasion protein regu 99.5 1.3E-10 2.7E-15 104.4 31.0 269 10-291 255-536 (553)
46 COG3071 HemY Uncharacterized e 99.5 1.8E-10 4E-15 92.9 28.0 282 62-354 96-384 (400)
47 KOG2076 RNA polymerase III tra 99.5 1.2E-09 2.5E-14 97.0 35.2 306 11-325 139-478 (895)
48 PF13041 PPR_2: PPR repeat fam 99.5 1E-13 2.2E-18 80.7 6.4 49 9-57 1-49 (50)
49 KOG1129 TPR repeat-containing 99.5 1E-11 2.2E-16 97.5 18.3 230 89-324 226-457 (478)
50 KOG4318 Bicoid mRNA stability 99.5 8.7E-12 1.9E-16 109.8 19.8 268 4-311 18-286 (1088)
51 KOG2002 TPR-containing nuclear 99.5 6.3E-10 1.4E-14 99.4 31.4 312 5-325 195-525 (1018)
52 KOG2076 RNA polymerase III tra 99.5 1.5E-09 3.3E-14 96.3 33.3 329 8-346 170-541 (895)
53 KOG2002 TPR-containing nuclear 99.5 4.5E-10 9.8E-15 100.3 29.3 318 10-337 413-757 (1018)
54 KOG1129 TPR repeat-containing 99.5 2E-11 4.2E-16 95.9 18.5 229 50-290 227-458 (478)
55 PF13041 PPR_2: PPR repeat fam 99.4 3.4E-13 7.5E-18 78.4 6.2 49 259-307 1-49 (50)
56 KOG0495 HAT repeat protein [RN 99.4 5.2E-09 1.1E-13 90.0 33.2 320 12-347 517-867 (913)
57 KOG4318 Bicoid mRNA stability 99.4 2E-11 4.4E-16 107.5 19.3 273 32-345 11-285 (1088)
58 KOG1173 Anaphase-promoting com 99.4 7.3E-10 1.6E-14 93.4 27.2 274 62-344 256-535 (611)
59 PF12569 NARP1: NMDA receptor- 99.4 5.8E-09 1.3E-13 91.0 32.6 292 17-324 10-333 (517)
60 KOG0547 Translocase of outer m 99.4 4.1E-09 8.8E-14 87.5 29.1 196 124-324 363-565 (606)
61 KOG1173 Anaphase-promoting com 99.4 3.8E-09 8.2E-14 89.2 27.9 290 6-308 239-534 (611)
62 KOG0495 HAT repeat protein [RN 99.4 1.5E-08 3.3E-13 87.2 31.5 305 8-325 547-880 (913)
63 KOG1840 Kinesin light chain [C 99.3 1.9E-09 4.1E-14 93.0 25.4 238 86-323 199-477 (508)
64 PRK11189 lipoprotein NlpI; Pro 99.3 9.8E-09 2.1E-13 84.7 27.4 219 64-291 40-266 (296)
65 COG3063 PilF Tfp pilus assembl 99.3 1.9E-08 4.1E-13 75.6 24.2 193 127-323 41-234 (250)
66 COG3063 PilF Tfp pilus assembl 99.3 1.9E-09 4.2E-14 80.8 18.6 201 158-362 37-238 (250)
67 KOG0547 Translocase of outer m 99.3 5.7E-09 1.2E-13 86.7 23.1 195 89-288 363-564 (606)
68 PRK11189 lipoprotein NlpI; Pro 99.3 1.7E-08 3.6E-13 83.3 26.3 231 99-339 39-278 (296)
69 KOG1915 Cell cycle control pro 99.3 4E-07 8.7E-12 75.8 33.5 307 7-325 170-536 (677)
70 PF12569 NARP1: NMDA receptor- 99.3 6.8E-08 1.5E-12 84.5 30.4 259 62-331 16-297 (517)
71 KOG1840 Kinesin light chain [C 99.2 1.1E-08 2.4E-13 88.4 23.7 198 91-288 246-477 (508)
72 cd05804 StaR_like StaR_like; a 99.2 3.7E-07 8E-12 78.1 31.0 306 11-325 6-336 (355)
73 PF04733 Coatomer_E: Coatomer 99.2 1.1E-08 2.3E-13 83.3 19.5 223 87-324 36-264 (290)
74 KOG1174 Anaphase-promoting com 99.1 2.1E-07 4.6E-12 76.1 25.4 310 21-346 206-519 (564)
75 KOG2047 mRNA splicing factor [ 99.1 2E-06 4.4E-11 74.4 31.8 305 12-323 249-613 (835)
76 PF04733 Coatomer_E: Coatomer 99.1 2.3E-08 5E-13 81.4 18.4 252 18-290 8-265 (290)
77 KOG1174 Anaphase-promoting com 99.1 3.2E-06 6.9E-11 69.4 31.8 272 6-291 227-501 (564)
78 KOG1915 Cell cycle control pro 99.1 4E-06 8.8E-11 70.0 32.7 312 12-339 74-408 (677)
79 cd05804 StaR_like StaR_like; a 99.1 1.2E-06 2.6E-11 74.9 29.5 266 18-289 50-335 (355)
80 KOG1128 Uncharacterized conser 99.1 5.7E-08 1.2E-12 84.7 20.3 243 83-346 395-638 (777)
81 KOG1070 rRNA processing protei 99.0 5.7E-07 1.2E-11 84.1 26.5 229 83-318 1455-1693(1710)
82 PF12854 PPR_1: PPR repeat 99.0 4.1E-10 8.9E-15 58.8 3.7 34 5-38 1-34 (34)
83 KOG4162 Predicted calmodulin-b 99.0 1.7E-05 3.6E-10 70.3 33.1 311 10-325 392-783 (799)
84 KOG4340 Uncharacterized conser 99.0 8.9E-07 1.9E-11 69.5 22.1 293 11-321 10-335 (459)
85 KOG2047 mRNA splicing factor [ 99.0 1.6E-05 3.5E-10 69.0 32.9 315 9-332 167-585 (835)
86 KOG0624 dsRNA-activated protei 98.9 1.2E-05 2.5E-10 64.6 27.1 292 16-325 43-370 (504)
87 KOG1125 TPR repeat-containing 98.9 2.8E-07 6E-12 78.5 18.5 222 95-323 294-525 (579)
88 PLN02789 farnesyltranstransfer 98.9 1.8E-05 3.9E-10 65.6 27.8 220 97-322 48-299 (320)
89 PRK14720 transcript cleavage f 98.9 4.8E-06 1E-10 76.9 26.6 269 10-341 30-300 (906)
90 KOG1156 N-terminal acetyltrans 98.9 4.3E-05 9.3E-10 66.5 33.2 167 10-184 74-247 (700)
91 KOG3785 Uncharacterized conser 98.9 1.9E-05 4.2E-10 63.7 26.3 96 232-333 399-496 (557)
92 KOG2376 Signal recognition par 98.9 4E-05 8.7E-10 66.0 33.7 41 304-345 466-506 (652)
93 PRK10370 formate-dependent nit 98.9 1.9E-06 4.1E-11 66.4 19.9 119 169-290 52-173 (198)
94 KOG1125 TPR repeat-containing 98.8 1.2E-06 2.6E-11 74.8 20.1 248 62-316 297-562 (579)
95 PF12854 PPR_1: PPR repeat 98.8 4.8E-09 1E-13 54.7 3.8 32 291-322 2-33 (34)
96 KOG1070 rRNA processing protei 98.8 1E-05 2.3E-10 76.0 27.3 233 43-283 1454-1693(1710)
97 TIGR03302 OM_YfiO outer membra 98.8 1.9E-06 4.2E-11 68.9 20.1 187 119-325 31-232 (235)
98 TIGR03302 OM_YfiO outer membra 98.8 2E-06 4.4E-11 68.8 20.0 188 83-290 30-232 (235)
99 KOG4340 Uncharacterized conser 98.8 6E-06 1.3E-10 64.9 21.2 263 10-287 43-336 (459)
100 PLN02789 farnesyltranstransfer 98.8 1.8E-05 3.9E-10 65.5 25.5 167 102-273 88-267 (320)
101 COG5010 TadD Flp pilus assembl 98.8 4.6E-06 9.9E-11 64.4 20.0 157 125-285 70-226 (257)
102 PRK10370 formate-dependent nit 98.8 5.3E-06 1.2E-10 63.9 20.5 118 135-255 53-173 (198)
103 KOG0548 Molecular co-chaperone 98.8 8E-05 1.7E-09 63.5 30.9 312 19-344 10-472 (539)
104 KOG1128 Uncharacterized conser 98.8 1.3E-06 2.9E-11 76.5 18.1 223 62-306 410-633 (777)
105 KOG3081 Vesicle coat complex C 98.8 2.4E-05 5.2E-10 60.6 22.6 244 63-324 21-270 (299)
106 COG5010 TadD Flp pilus assembl 98.8 6.2E-06 1.3E-10 63.7 19.5 159 160-322 70-228 (257)
107 COG4783 Putative Zn-dependent 98.7 5.9E-05 1.3E-09 63.6 26.5 204 62-290 249-454 (484)
108 PRK15359 type III secretion sy 98.7 1.9E-06 4.2E-11 62.7 15.9 95 194-290 27-121 (144)
109 PRK04841 transcriptional regul 98.7 8.3E-05 1.8E-09 72.1 31.3 307 16-325 414-760 (903)
110 PRK15179 Vi polysaccharide bio 98.7 2E-05 4.4E-10 72.0 24.7 186 152-347 82-271 (694)
111 PRK15179 Vi polysaccharide bio 98.7 2.7E-05 5.9E-10 71.2 25.2 135 83-220 83-217 (694)
112 KOG3617 WD40 and TPR repeat-co 98.7 0.0001 2.2E-09 66.2 27.1 285 10-323 756-1107(1416)
113 KOG3785 Uncharacterized conser 98.7 6.2E-05 1.3E-09 60.9 23.2 113 207-321 339-453 (557)
114 KOG1156 N-terminal acetyltrans 98.7 0.00014 3.1E-09 63.4 26.8 311 8-333 4-325 (700)
115 PRK15359 type III secretion sy 98.6 6.1E-06 1.3E-10 60.1 16.3 94 161-256 29-122 (144)
116 TIGR02552 LcrH_SycD type III s 98.6 2.9E-06 6.3E-11 61.4 14.3 94 229-324 20-113 (135)
117 KOG0985 Vesicle coat protein c 98.6 5.4E-05 1.2E-09 69.3 24.5 246 19-308 1056-1325(1666)
118 PRK04841 transcriptional regul 98.6 0.00028 6.1E-09 68.5 31.8 262 64-325 423-720 (903)
119 PRK14720 transcript cleavage f 98.6 5.7E-05 1.2E-09 70.1 24.0 234 83-342 28-268 (906)
120 KOG3081 Vesicle coat complex C 98.6 9.5E-05 2.1E-09 57.4 21.1 258 9-290 8-271 (299)
121 TIGR02552 LcrH_SycD type III s 98.6 6.9E-06 1.5E-10 59.4 14.6 106 191-300 17-122 (135)
122 KOG3060 Uncharacterized conser 98.6 0.00016 3.5E-09 55.8 22.0 186 100-289 26-219 (289)
123 KOG0985 Vesicle coat protein c 98.6 0.00035 7.6E-09 64.3 27.4 231 10-285 983-1218(1666)
124 KOG3060 Uncharacterized conser 98.5 0.00023 5.1E-09 54.9 21.5 187 66-257 28-222 (289)
125 KOG4162 Predicted calmodulin-b 98.5 0.00073 1.6E-08 60.4 31.5 207 6-218 318-540 (799)
126 KOG3616 Selective LIM binding 98.5 0.00011 2.5E-09 65.1 22.2 170 92-286 738-907 (1636)
127 COG4783 Putative Zn-dependent 98.5 0.00019 4.2E-09 60.6 22.4 154 166-341 316-472 (484)
128 TIGR00756 PPR pentatricopeptid 98.5 2.9E-07 6.3E-12 48.8 4.1 35 12-46 1-35 (35)
129 PF13812 PPR_3: Pentatricopept 98.5 3.7E-07 8.1E-12 48.0 4.2 33 12-44 2-34 (34)
130 KOG3617 WD40 and TPR repeat-co 98.4 9.2E-05 2E-09 66.5 20.4 242 45-323 725-994 (1416)
131 PF10037 MRP-S27: Mitochondria 98.4 1E-05 2.2E-10 68.7 13.8 124 221-344 61-186 (429)
132 KOG2053 Mitochondrial inherita 98.4 0.0017 3.7E-08 59.1 29.9 228 21-258 19-258 (932)
133 TIGR00756 PPR pentatricopeptid 98.4 7.6E-07 1.6E-11 47.2 4.1 33 298-330 2-34 (35)
134 PF13812 PPR_3: Pentatricopept 98.4 8.5E-07 1.8E-11 46.6 4.2 32 298-329 3-34 (34)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 3E-05 6.5E-10 65.6 15.1 120 162-287 175-294 (395)
136 KOG1914 mRNA cleavage and poly 98.3 0.0014 3E-08 56.4 31.0 128 194-323 369-499 (656)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.1E-05 6.8E-10 65.5 15.1 127 192-324 170-296 (395)
138 KOG2053 Mitochondrial inherita 98.3 0.0013 2.9E-08 59.8 25.4 222 62-291 21-256 (932)
139 PF09976 TPR_21: Tetratricopep 98.3 8.1E-05 1.7E-09 54.4 15.4 124 194-321 15-143 (145)
140 KOG0624 dsRNA-activated protei 98.3 0.0011 2.5E-08 53.7 26.8 272 9-291 67-371 (504)
141 PF10037 MRP-S27: Mitochondria 98.3 1.9E-05 4.1E-10 67.1 12.4 121 83-203 63-185 (429)
142 PF09976 TPR_21: Tetratricopep 98.2 0.00024 5.1E-09 52.0 16.0 125 159-286 15-143 (145)
143 KOG3616 Selective LIM binding 98.2 0.00067 1.4E-08 60.5 20.9 167 128-319 739-905 (1636)
144 KOG2376 Signal recognition par 98.2 0.0028 6.1E-08 55.1 30.6 127 191-321 376-516 (652)
145 PF08579 RPM2: Mitochondrial r 98.2 4.2E-05 9E-10 51.1 10.4 77 267-343 31-116 (120)
146 PF05843 Suf: Suppressor of fo 98.2 0.00011 2.5E-09 60.0 14.6 144 193-341 3-150 (280)
147 PF08579 RPM2: Mitochondrial r 98.1 7.8E-05 1.7E-09 49.9 10.3 76 197-272 31-115 (120)
148 PF01535 PPR: PPR repeat; Int 98.1 3.6E-06 7.9E-11 43.0 3.3 31 12-42 1-31 (31)
149 cd00189 TPR Tetratricopeptide 98.1 0.00014 3.1E-09 48.4 11.5 93 230-324 4-96 (100)
150 cd00189 TPR Tetratricopeptide 98.1 0.00013 2.8E-09 48.7 11.2 92 196-289 5-96 (100)
151 KOG0548 Molecular co-chaperone 98.0 0.0023 4.9E-08 55.0 19.8 213 89-308 227-471 (539)
152 PF12895 Apc3: Anaphase-promot 98.0 1.5E-05 3.2E-10 52.1 5.8 81 239-321 2-83 (84)
153 PLN03088 SGT1, suppressor of 98.0 0.00018 4E-09 61.0 13.8 102 198-303 9-110 (356)
154 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00042 9E-09 48.6 13.5 22 92-113 8-29 (119)
155 PF01535 PPR: PPR repeat; Int 98.0 8.3E-06 1.8E-10 41.7 3.5 29 298-326 2-30 (31)
156 PRK10866 outer membrane biogen 98.0 0.0042 9.1E-08 49.6 20.3 177 127-323 38-239 (243)
157 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.0005 1.1E-08 48.2 13.7 100 122-221 3-106 (119)
158 PRK15363 pathogenicity island 98.0 0.00065 1.4E-08 49.1 13.8 89 198-288 42-130 (157)
159 PLN03088 SGT1, suppressor of 98.0 0.00035 7.7E-09 59.3 14.5 94 162-257 8-101 (356)
160 KOG0553 TPR repeat-containing 98.0 0.00018 4E-09 57.0 11.4 96 201-300 91-186 (304)
161 PRK15363 pathogenicity island 98.0 0.0011 2.4E-08 47.9 14.4 87 236-324 45-131 (157)
162 KOG1914 mRNA cleavage and poly 98.0 0.0056 1.2E-07 52.8 20.4 149 137-287 347-498 (656)
163 KOG1127 TPR repeat-containing 97.9 0.0051 1.1E-07 57.0 21.3 182 66-254 474-658 (1238)
164 PF06239 ECSIT: Evolutionarily 97.9 0.00045 9.8E-09 52.4 12.6 87 83-169 44-151 (228)
165 PRK02603 photosystem I assembl 97.9 0.0012 2.5E-08 49.9 14.8 91 85-176 34-126 (172)
166 KOG1127 TPR repeat-containing 97.9 0.021 4.5E-07 53.3 24.6 184 100-289 472-658 (1238)
167 PRK02603 photosystem I assembl 97.9 0.0014 3E-08 49.5 14.9 61 124-184 38-100 (172)
168 PF05843 Suf: Suppressor of fo 97.9 0.00069 1.5E-08 55.5 14.2 129 88-219 3-135 (280)
169 PF12895 Apc3: Anaphase-promot 97.9 4.4E-05 9.6E-10 49.8 5.7 20 197-216 31-50 (84)
170 PF06239 ECSIT: Evolutionarily 97.9 0.00047 1E-08 52.3 11.5 105 188-311 44-153 (228)
171 PRK10153 DNA-binding transcrip 97.8 0.0038 8.2E-08 55.7 17.9 142 187-334 333-489 (517)
172 CHL00033 ycf3 photosystem I as 97.8 0.0009 2E-08 50.3 12.3 61 159-219 38-100 (168)
173 PF14938 SNAP: Soluble NSF att 97.8 0.0025 5.5E-08 52.4 15.8 212 12-254 36-265 (282)
174 CHL00033 ycf3 photosystem I as 97.8 0.00071 1.5E-08 50.9 11.6 81 191-272 35-117 (168)
175 PRK10153 DNA-binding transcrip 97.7 0.0093 2E-07 53.3 19.2 141 6-150 332-482 (517)
176 PF14938 SNAP: Soluble NSF att 97.7 0.0034 7.4E-08 51.7 15.5 138 206-344 89-248 (282)
177 KOG0553 TPR repeat-containing 97.7 0.00087 1.9E-08 53.3 11.2 152 164-324 89-244 (304)
178 PF14559 TPR_19: Tetratricopep 97.7 0.00027 5.9E-09 43.9 7.0 52 238-290 3-54 (68)
179 COG4235 Cytochrome c biogenesi 97.7 0.0066 1.4E-07 48.7 15.6 102 223-326 153-257 (287)
180 PF12688 TPR_5: Tetratrico pep 97.6 0.0045 9.7E-08 43.1 12.6 90 93-182 8-101 (120)
181 PF12688 TPR_5: Tetratrico pep 97.6 0.0085 1.8E-07 41.7 13.5 56 129-184 9-66 (120)
182 PF13432 TPR_16: Tetratricopep 97.6 0.00057 1.2E-08 42.0 6.9 55 269-324 5-59 (65)
183 PF14559 TPR_19: Tetratricopep 97.5 0.00045 9.7E-09 42.9 6.4 64 272-338 2-65 (68)
184 PRK10866 outer membrane biogen 97.5 0.029 6.3E-07 44.9 19.7 184 85-288 31-239 (243)
185 KOG1538 Uncharacterized conser 97.5 0.013 2.8E-07 51.9 16.6 257 6-289 551-845 (1081)
186 KOG2796 Uncharacterized conser 97.5 0.0095 2.1E-07 46.7 14.1 129 195-324 181-314 (366)
187 PF13414 TPR_11: TPR repeat; P 97.5 0.00086 1.9E-08 41.7 7.4 64 260-324 2-66 (69)
188 KOG1130 Predicted G-alpha GTPa 97.5 0.006 1.3E-07 50.9 13.7 265 19-288 25-342 (639)
189 PF13432 TPR_16: Tetratricopep 97.5 0.00062 1.3E-08 41.8 6.5 55 234-289 5-59 (65)
190 PF04840 Vps16_C: Vps16, C-ter 97.5 0.047 1E-06 45.5 24.4 109 193-321 179-287 (319)
191 COG4700 Uncharacterized protei 97.4 0.026 5.6E-07 41.9 18.2 101 153-255 86-189 (251)
192 PRK15331 chaperone protein Sic 97.4 0.017 3.7E-07 42.2 13.6 85 238-324 49-133 (165)
193 PF13414 TPR_11: TPR repeat; P 97.4 0.0014 2.9E-08 40.8 7.2 19 235-253 12-30 (69)
194 COG4235 Cytochrome c biogenesi 97.4 0.021 4.5E-07 45.9 15.0 103 187-291 152-257 (287)
195 PF03704 BTAD: Bacterial trans 97.4 0.0016 3.5E-08 47.6 8.4 72 262-334 63-139 (146)
196 PF13525 YfiO: Outer membrane 97.3 0.051 1.1E-06 42.3 17.8 81 229-315 113-197 (203)
197 PRK10803 tol-pal system protei 97.3 0.021 4.6E-07 46.1 14.4 87 238-324 155-245 (263)
198 PF12921 ATP13: Mitochondrial 97.3 0.0089 1.9E-07 42.1 10.7 102 225-346 1-103 (126)
199 PRK10803 tol-pal system protei 97.3 0.013 2.9E-07 47.3 13.0 86 97-184 154-245 (263)
200 PRK15331 chaperone protein Sic 97.2 0.045 9.7E-07 40.0 14.4 90 198-289 44-133 (165)
201 PF04840 Vps16_C: Vps16, C-ter 97.2 0.095 2.1E-06 43.7 24.1 123 158-306 179-301 (319)
202 COG4700 Uncharacterized protei 97.2 0.055 1.2E-06 40.3 18.1 127 118-246 86-213 (251)
203 KOG0550 Molecular chaperone (D 97.2 0.11 2.5E-06 43.7 19.2 276 62-344 61-370 (486)
204 PF13371 TPR_9: Tetratricopept 97.1 0.0058 1.3E-07 38.4 7.8 54 270-324 4-57 (73)
205 PF03704 BTAD: Bacterial trans 97.1 0.0046 9.9E-08 45.3 8.2 70 228-298 64-138 (146)
206 KOG2796 Uncharacterized conser 97.0 0.11 2.4E-06 41.0 18.5 134 158-292 179-317 (366)
207 PF13281 DUF4071: Domain of un 97.0 0.18 3.9E-06 42.7 19.4 77 125-201 145-227 (374)
208 PF12921 ATP13: Mitochondrial 97.0 0.027 5.9E-07 39.7 10.8 52 222-273 48-100 (126)
209 PF13371 TPR_9: Tetratricopept 96.9 0.0079 1.7E-07 37.8 7.3 55 235-290 4-58 (73)
210 PF13525 YfiO: Outer membrane 96.9 0.13 2.8E-06 40.0 17.3 172 91-281 10-198 (203)
211 PF13170 DUF4003: Protein of u 96.8 0.15 3.2E-06 42.1 15.7 138 27-166 78-227 (297)
212 PF13424 TPR_12: Tetratricopep 96.8 0.0049 1.1E-07 39.4 5.9 62 262-323 6-73 (78)
213 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.025 5.5E-07 48.4 11.2 67 223-290 72-141 (453)
214 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.14 3E-06 43.8 14.6 143 88-236 399-545 (660)
215 KOG0550 Molecular chaperone (D 96.7 0.33 7.1E-06 41.1 22.3 280 16-307 54-368 (486)
216 KOG3941 Intermediate in Toll s 96.7 0.025 5.4E-07 44.9 9.4 89 83-171 64-173 (406)
217 KOG1130 Predicted G-alpha GTPa 96.6 0.037 8E-07 46.5 10.7 261 62-324 29-343 (639)
218 PF04053 Coatomer_WDAD: Coatom 96.6 0.13 2.8E-06 45.1 14.3 106 89-221 298-403 (443)
219 PF13281 DUF4071: Domain of un 96.6 0.4 8.6E-06 40.7 21.4 167 157-325 142-334 (374)
220 KOG2041 WD40 repeat protein [G 96.5 0.59 1.3E-05 42.5 23.4 81 266-346 1026-1110(1189)
221 PF08631 SPO22: Meiosis protei 96.5 0.35 7.6E-06 39.8 23.9 101 123-225 86-191 (278)
222 PF13424 TPR_12: Tetratricopep 96.5 0.0093 2E-07 38.1 5.5 61 87-147 6-72 (78)
223 KOG3941 Intermediate in Toll s 96.5 0.026 5.6E-07 44.8 8.4 103 224-345 65-172 (406)
224 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.074 1.6E-06 45.7 11.7 66 188-255 72-141 (453)
225 COG3898 Uncharacterized membra 96.4 0.5 1.1E-05 39.8 27.4 295 13-325 84-392 (531)
226 KOG2280 Vacuolar assembly/sort 96.2 0.98 2.1E-05 41.4 21.5 109 193-320 686-794 (829)
227 KOG0543 FKBP-type peptidyl-pro 96.2 0.14 3.1E-06 43.1 11.7 62 228-290 259-320 (397)
228 PF04053 Coatomer_WDAD: Coatom 96.1 0.3 6.5E-06 42.9 14.1 158 94-287 269-428 (443)
229 PF13512 TPR_18: Tetratricopep 96.1 0.25 5.4E-06 35.3 11.0 72 237-308 21-94 (142)
230 PF10300 DUF3808: Protein of u 96.1 1 2.2E-05 40.2 17.5 161 160-323 192-374 (468)
231 PF07079 DUF1347: Protein of u 96.0 0.92 2E-05 39.1 32.2 121 207-335 396-529 (549)
232 KOG0543 FKBP-type peptidyl-pro 96.0 0.38 8.3E-06 40.6 13.1 125 163-289 215-354 (397)
233 PF04184 ST7: ST7 protein; In 95.8 0.52 1.1E-05 41.1 13.5 56 232-287 265-321 (539)
234 COG1729 Uncharacterized protei 95.7 0.26 5.6E-06 39.3 10.9 98 158-256 144-245 (262)
235 PF10300 DUF3808: Protein of u 95.7 1.4 3E-05 39.4 22.6 83 136-220 248-334 (468)
236 smart00299 CLH Clathrin heavy 95.7 0.5 1.1E-05 34.1 15.0 41 92-133 13-53 (140)
237 PF13170 DUF4003: Protein of u 95.7 1 2.2E-05 37.3 19.1 129 102-232 78-223 (297)
238 COG1729 Uncharacterized protei 95.7 0.55 1.2E-05 37.5 12.4 96 228-324 144-243 (262)
239 PF09205 DUF1955: Domain of un 95.7 0.47 1E-05 33.3 15.6 139 97-257 13-151 (161)
240 KOG2610 Uncharacterized conser 95.7 0.63 1.4E-05 38.4 12.8 154 132-288 114-274 (491)
241 PF13428 TPR_14: Tetratricopep 95.5 0.067 1.4E-06 29.6 5.2 27 264-290 4-30 (44)
242 KOG2610 Uncharacterized conser 95.5 0.7 1.5E-05 38.1 12.6 152 97-251 114-272 (491)
243 KOG1941 Acetylcholine receptor 95.5 1.3 2.8E-05 37.1 14.4 232 22-253 17-273 (518)
244 COG3629 DnrI DNA-binding trans 95.4 0.32 6.9E-06 39.4 10.5 76 227-303 154-234 (280)
245 KOG1538 Uncharacterized conser 95.4 2 4.4E-05 38.9 16.2 217 15-255 602-846 (1081)
246 PF13428 TPR_14: Tetratricopep 95.4 0.065 1.4E-06 29.6 4.8 37 228-265 3-39 (44)
247 KOG2041 WD40 repeat protein [G 95.3 2.3 4.9E-05 39.0 23.7 54 84-146 850-903 (1189)
248 COG3629 DnrI DNA-binding trans 95.3 0.35 7.6E-06 39.2 10.4 75 192-267 154-233 (280)
249 KOG4555 TPR repeat-containing 95.2 0.69 1.5E-05 32.4 10.9 91 165-256 52-145 (175)
250 KOG1585 Protein required for f 95.2 1.2 2.6E-05 35.1 17.5 207 11-249 31-250 (308)
251 PF07035 Mic1: Colon cancer-as 95.2 0.91 2E-05 33.7 14.4 23 35-57 18-40 (167)
252 smart00299 CLH Clathrin heavy 95.1 0.83 1.8E-05 33.0 14.9 42 161-203 12-53 (140)
253 PRK11906 transcriptional regul 95.1 2.1 4.5E-05 37.4 16.1 146 171-321 273-432 (458)
254 KOG4555 TPR repeat-containing 94.9 0.86 1.9E-05 32.0 11.2 92 94-186 51-145 (175)
255 PF13929 mRNA_stabil: mRNA sta 94.9 1.7 3.7E-05 35.3 16.2 120 62-181 140-263 (292)
256 KOG4570 Uncharacterized conser 94.9 0.96 2.1E-05 37.0 11.5 101 223-325 61-164 (418)
257 PF09205 DUF1955: Domain of un 94.8 0.9 2E-05 31.9 14.1 140 21-187 12-151 (161)
258 KOG2280 Vacuolar assembly/sort 94.8 3.3 7.1E-05 38.2 20.2 303 6-323 427-771 (829)
259 KOG2114 Vacuolar assembly/sort 94.7 1.4 3E-05 41.0 13.4 119 16-147 339-457 (933)
260 KOG2114 Vacuolar assembly/sort 94.7 1.5 3.2E-05 40.9 13.6 168 62-252 346-516 (933)
261 KOG1920 IkappaB kinase complex 94.5 5.2 0.00011 39.1 20.8 81 197-288 971-1053(1265)
262 PF07079 DUF1347: Protein of u 94.5 2.9 6.4E-05 36.2 27.2 141 21-168 16-179 (549)
263 COG3118 Thioredoxin domain-con 94.4 2.3 5E-05 34.6 17.8 49 133-182 146-194 (304)
264 PF09613 HrpB1_HrpK: Bacterial 94.4 1.5 3.2E-05 32.2 12.4 53 202-256 21-74 (160)
265 PF13176 TPR_7: Tetratricopept 94.3 0.12 2.7E-06 27.0 4.0 26 13-38 1-26 (36)
266 cd00923 Cyt_c_Oxidase_Va Cytoc 94.3 0.69 1.5E-05 30.4 7.8 62 277-340 23-85 (103)
267 PF08631 SPO22: Meiosis protei 94.3 2.6 5.5E-05 34.8 25.2 223 98-323 5-273 (278)
268 COG3898 Uncharacterized membra 94.3 3 6.4E-05 35.4 30.8 291 26-338 68-369 (531)
269 PF04184 ST7: ST7 protein; In 94.2 3.6 7.7E-05 36.2 16.8 78 156-233 259-338 (539)
270 COG4105 ComL DNA uptake lipopr 94.2 2.3 5E-05 33.8 21.2 57 267-324 173-232 (254)
271 PF13512 TPR_18: Tetratricopep 94.1 1.6 3.4E-05 31.4 11.2 84 46-134 11-95 (142)
272 COG4105 ComL DNA uptake lipopr 94.0 2.5 5.4E-05 33.6 20.0 54 62-115 46-100 (254)
273 KOG1585 Protein required for f 94.0 2.4 5.3E-05 33.4 19.0 205 87-318 32-249 (308)
274 PF10602 RPN7: 26S proteasome 94.0 0.85 1.8E-05 34.5 9.3 97 227-323 37-140 (177)
275 COG5107 RNA14 Pre-mRNA 3'-end 93.9 3.9 8.5E-05 35.5 23.4 141 158-304 399-543 (660)
276 COG3118 Thioredoxin domain-con 93.9 3 6.5E-05 34.0 16.4 50 203-253 146-195 (304)
277 COG4649 Uncharacterized protei 93.8 2.1 4.5E-05 31.9 13.7 133 86-219 59-195 (221)
278 PF10602 RPN7: 26S proteasome 93.8 2.3 4.9E-05 32.2 12.2 63 87-149 37-101 (177)
279 PF09613 HrpB1_HrpK: Bacterial 93.7 2 4.4E-05 31.5 12.0 19 96-114 54-72 (160)
280 PF13176 TPR_7: Tetratricopept 93.5 0.25 5.4E-06 25.8 4.2 25 89-113 2-26 (36)
281 PF13431 TPR_17: Tetratricopep 93.4 0.13 2.7E-06 26.6 2.8 21 260-280 12-32 (34)
282 COG2909 MalT ATP-dependent tra 93.1 8.2 0.00018 36.6 24.6 226 96-321 425-684 (894)
283 PF02284 COX5A: Cytochrome c o 92.7 2 4.3E-05 28.7 10.1 62 279-341 28-89 (108)
284 COG0457 NrfG FOG: TPR repeat [ 92.7 3.9 8.4E-05 32.0 28.9 87 236-324 177-264 (291)
285 PRK11906 transcriptional regul 92.6 6.7 0.00014 34.4 17.6 136 47-184 252-400 (458)
286 KOG4570 Uncharacterized conser 92.5 3.6 7.7E-05 33.9 10.9 99 85-185 63-164 (418)
287 PF02284 COX5A: Cytochrome c o 92.3 2.3 5E-05 28.4 8.7 47 209-255 28-74 (108)
288 COG4649 Uncharacterized protei 92.3 3.7 8E-05 30.6 13.8 127 62-189 70-200 (221)
289 PF07035 Mic1: Colon cancer-as 92.1 3.8 8.3E-05 30.5 15.7 136 176-325 14-149 (167)
290 TIGR02561 HrpB1_HrpK type III 92.1 3.4 7.5E-05 29.9 11.4 20 96-115 54-73 (153)
291 PF00515 TPR_1: Tetratricopept 92.0 0.58 1.3E-05 23.8 4.3 27 263-289 3-29 (34)
292 TIGR02561 HrpB1_HrpK type III 91.7 3.8 8.2E-05 29.7 10.9 50 204-255 23-73 (153)
293 PF13374 TPR_10: Tetratricopep 91.5 0.59 1.3E-05 25.0 4.3 29 11-39 2-30 (42)
294 PF00515 TPR_1: Tetratricopept 91.3 0.76 1.7E-05 23.3 4.3 29 12-40 2-30 (34)
295 PF07719 TPR_2: Tetratricopept 91.3 0.76 1.6E-05 23.2 4.3 29 12-40 2-30 (34)
296 PF00637 Clathrin: Region in C 91.1 0.075 1.6E-06 38.6 0.4 53 233-285 14-66 (143)
297 PF07719 TPR_2: Tetratricopept 91.0 0.83 1.8E-05 23.1 4.3 26 299-324 4-29 (34)
298 TIGR03504 FimV_Cterm FimV C-te 91.0 0.53 1.1E-05 25.9 3.5 24 302-325 5-28 (44)
299 PF13431 TPR_17: Tetratricopep 90.8 0.31 6.7E-06 25.1 2.4 32 284-316 2-33 (34)
300 PF11207 DUF2989: Protein of u 90.8 3.9 8.5E-05 31.4 9.1 73 243-316 123-198 (203)
301 COG0457 NrfG FOG: TPR repeat [ 90.6 6.8 0.00015 30.5 29.9 223 65-290 38-265 (291)
302 COG4785 NlpI Lipoprotein NlpI, 90.5 7 0.00015 30.4 14.7 29 262-290 238-266 (297)
303 PF11207 DUF2989: Protein of u 90.2 4.2 9.1E-05 31.2 8.8 18 261-278 178-195 (203)
304 COG4455 ImpE Protein of avirul 90.0 3.6 7.8E-05 31.9 8.3 77 193-270 3-81 (273)
305 KOG1941 Acetylcholine receptor 89.9 11 0.00024 31.8 13.7 204 13-218 45-273 (518)
306 PF13374 TPR_10: Tetratricopep 89.7 1.2 2.7E-05 23.7 4.5 28 87-114 3-30 (42)
307 PF13174 TPR_6: Tetratricopept 89.6 0.72 1.6E-05 23.1 3.3 27 14-40 3-29 (33)
308 KOG4077 Cytochrome c oxidase, 88.9 5.2 0.00011 27.9 7.6 45 280-324 68-112 (149)
309 COG5187 RPN7 26S proteasome re 88.8 12 0.00025 30.6 15.0 117 66-184 95-220 (412)
310 PF11848 DUF3368: Domain of un 88.3 2.1 4.6E-05 24.1 4.7 34 307-340 13-46 (48)
311 KOG0687 26S proteasome regulat 87.9 15 0.00032 30.6 15.6 95 87-183 105-208 (393)
312 cd00923 Cyt_c_Oxidase_Va Cytoc 87.7 6.1 0.00013 26.1 9.2 44 210-253 26-69 (103)
313 PRK15180 Vi polysaccharide bio 87.5 14 0.0003 32.6 11.0 84 238-323 335-418 (831)
314 PF13762 MNE1: Mitochondrial s 87.3 9.2 0.0002 27.7 10.0 50 295-344 78-128 (145)
315 KOG0276 Vesicle coat complex C 87.2 13 0.00028 33.8 10.9 152 96-287 596-747 (794)
316 PF07163 Pex26: Pex26 protein; 87.0 14 0.00031 30.0 10.1 89 161-249 88-181 (309)
317 KOG4648 Uncharacterized conser 87.0 5.2 0.00011 33.4 7.9 93 199-295 105-197 (536)
318 PRK15180 Vi polysaccharide bio 86.9 21 0.00046 31.5 14.5 125 94-221 297-421 (831)
319 PRK09687 putative lyase; Provi 86.8 16 0.00035 30.1 29.5 236 83-343 34-279 (280)
320 PF00637 Clathrin: Region in C 86.8 0.25 5.3E-06 35.9 0.5 53 128-180 14-66 (143)
321 PF07163 Pex26: Pex26 protein; 86.6 13 0.00028 30.3 9.7 87 93-179 90-181 (309)
322 KOG1920 IkappaB kinase complex 85.7 40 0.00087 33.6 20.0 80 163-253 972-1053(1265)
323 COG4455 ImpE Protein of avirul 85.4 8.9 0.00019 29.9 8.0 76 159-235 4-81 (273)
324 PF13181 TPR_8: Tetratricopept 85.3 3.2 6.9E-05 20.9 4.3 27 298-324 3-29 (34)
325 PF07721 TPR_4: Tetratricopept 85.2 1.6 3.5E-05 20.7 2.8 23 13-35 3-25 (26)
326 TIGR03504 FimV_Cterm FimV C-te 85.2 2.4 5.1E-05 23.4 3.7 26 16-41 4-29 (44)
327 PF13174 TPR_6: Tetratricopept 85.1 3.3 7.1E-05 20.5 4.4 27 299-325 3-29 (33)
328 PF13181 TPR_8: Tetratricopept 84.9 3.3 7.2E-05 20.8 4.2 29 12-40 2-30 (34)
329 PF06552 TOM20_plant: Plant sp 84.9 15 0.00032 27.8 10.6 43 277-327 96-138 (186)
330 KOG2063 Vacuolar assembly/sort 84.5 41 0.0009 32.7 14.4 28 123-150 506-533 (877)
331 KOG4648 Uncharacterized conser 83.9 8.6 0.00019 32.2 7.8 91 163-256 104-195 (536)
332 PF02259 FAT: FAT domain; Int 83.4 27 0.00059 29.7 22.0 67 189-255 144-213 (352)
333 KOG1550 Extracellular protein 83.4 38 0.00081 31.3 25.5 188 27-221 228-427 (552)
334 COG1747 Uncharacterized N-term 83.4 33 0.00072 30.7 25.6 165 120-291 65-235 (711)
335 COG1747 Uncharacterized N-term 82.7 36 0.00077 30.5 26.1 181 83-271 63-249 (711)
336 KOG4234 TPR repeat-containing 82.5 20 0.00044 27.6 11.3 92 199-291 103-198 (271)
337 KOG4077 Cytochrome c oxidase, 82.3 13 0.00027 26.1 6.9 45 245-289 68-112 (149)
338 PF07575 Nucleopor_Nup85: Nup8 82.2 16 0.00036 33.7 10.1 32 308-339 507-538 (566)
339 COG4785 NlpI Lipoprotein NlpI, 82.1 22 0.00049 27.8 15.6 161 156-327 99-268 (297)
340 PHA02875 ankyrin repeat protei 81.5 15 0.00032 32.3 9.4 191 80-296 24-230 (413)
341 PRK09687 putative lyase; Provi 81.0 30 0.00065 28.6 28.2 235 43-307 34-278 (280)
342 PF06552 TOM20_plant: Plant sp 81.0 22 0.00047 26.9 9.5 61 280-344 54-126 (186)
343 KOG0276 Vesicle coat complex C 80.2 27 0.00059 31.9 10.0 131 13-182 616-747 (794)
344 KOG1550 Extracellular protein 80.2 49 0.0011 30.6 25.0 180 66-256 228-427 (552)
345 PF10579 Rapsyn_N: Rapsyn N-te 80.1 11 0.00023 23.9 5.6 46 273-318 18-65 (80)
346 KOG4234 TPR repeat-containing 79.9 26 0.00056 27.1 10.2 61 89-150 137-197 (271)
347 COG3947 Response regulator con 79.1 35 0.00075 28.2 15.9 72 262-334 280-356 (361)
348 COG5159 RPN6 26S proteasome re 78.9 35 0.00075 28.0 11.0 127 17-147 9-151 (421)
349 KOG4507 Uncharacterized conser 78.6 22 0.00047 32.4 8.9 150 44-199 569-718 (886)
350 PRK10564 maltose regulon perip 78.6 6.3 0.00014 32.4 5.4 45 294-338 254-299 (303)
351 PF11848 DUF3368: Domain of un 78.3 9.9 0.00021 21.4 4.9 37 18-54 9-45 (48)
352 PF13929 mRNA_stabil: mRNA sta 77.5 39 0.00084 27.8 21.9 64 223-286 199-263 (292)
353 PF12862 Apc5: Anaphase-promot 77.5 13 0.00027 24.6 5.9 16 22-37 9-24 (94)
354 PF14689 SPOB_a: Sensor_kinase 74.7 12 0.00027 22.4 4.8 21 127-147 29-49 (62)
355 smart00028 TPR Tetratricopepti 74.5 7.7 0.00017 18.3 3.6 28 12-39 2-29 (34)
356 KOG4507 Uncharacterized conser 74.3 22 0.00048 32.3 7.9 101 168-270 619-719 (886)
357 KOG4567 GTPase-activating prot 74.1 43 0.00094 27.8 8.8 43 212-254 264-306 (370)
358 COG3947 Response regulator con 74.0 49 0.0011 27.3 15.4 195 102-299 103-356 (361)
359 PF11846 DUF3366: Domain of un 73.3 22 0.00047 27.4 7.2 32 293-324 141-172 (193)
360 PF09454 Vps23_core: Vps23 cor 71.6 19 0.00042 21.9 5.1 51 259-310 6-56 (65)
361 cd00280 TRFH Telomeric Repeat 70.6 45 0.00097 25.4 7.7 21 269-289 119-139 (200)
362 PF08424 NRDE-2: NRDE-2, neces 70.6 65 0.0014 27.3 16.7 118 208-327 48-185 (321)
363 COG5108 RPO41 Mitochondrial DN 70.6 46 0.00099 31.0 9.0 75 196-273 33-115 (1117)
364 PF11846 DUF3366: Domain of un 70.5 32 0.00069 26.4 7.5 32 258-289 141-172 (193)
365 PF10579 Rapsyn_N: Rapsyn N-te 70.4 17 0.00036 23.1 4.6 15 230-244 47-61 (80)
366 PRK10564 maltose regulon perip 70.2 13 0.00028 30.6 5.3 42 83-124 253-295 (303)
367 COG0735 Fur Fe2+/Zn2+ uptake r 69.6 39 0.00085 24.6 7.3 47 251-298 11-57 (145)
368 PF07575 Nucleopor_Nup85: Nup8 69.0 1E+02 0.0022 28.8 15.1 28 8-36 146-173 (566)
369 KOG0687 26S proteasome regulat 68.6 71 0.0015 26.9 13.5 136 80-219 64-209 (393)
370 TIGR02508 type_III_yscG type I 68.5 33 0.00072 23.1 9.1 51 165-221 48-98 (115)
371 PF14689 SPOB_a: Sensor_kinase 68.2 19 0.0004 21.7 4.5 31 84-114 21-51 (62)
372 PF14853 Fis1_TPR_C: Fis1 C-te 67.8 21 0.00046 20.6 5.7 23 267-289 7-29 (53)
373 COG0735 Fur Fe2+/Zn2+ uptake r 67.7 40 0.00086 24.6 7.0 61 144-205 9-69 (145)
374 COG5159 RPN6 26S proteasome re 67.5 70 0.0015 26.4 10.5 30 163-192 10-39 (421)
375 cd08819 CARD_MDA5_2 Caspase ac 67.4 32 0.00068 22.4 7.0 64 246-315 22-85 (88)
376 COG0790 FOG: TPR repeat, SEL1 67.1 72 0.0016 26.4 23.3 25 241-265 252-276 (292)
377 COG2976 Uncharacterized protei 67.1 56 0.0012 25.2 14.4 55 269-325 134-188 (207)
378 PHA02875 ankyrin repeat protei 66.6 92 0.002 27.4 13.1 201 31-261 15-230 (413)
379 cd00280 TRFH Telomeric Repeat 66.4 56 0.0012 24.9 7.4 43 302-347 117-159 (200)
380 KOG0376 Serine-threonine phosp 65.6 25 0.00053 31.0 6.3 107 198-309 11-118 (476)
381 KOG1464 COP9 signalosome, subu 65.6 74 0.0016 26.0 18.6 156 63-218 40-218 (440)
382 PF09454 Vps23_core: Vps23 cor 63.2 32 0.00069 21.0 5.7 47 294-341 6-52 (65)
383 PF10475 DUF2450: Protein of u 63.0 89 0.0019 26.0 9.4 111 126-247 103-218 (291)
384 PF11663 Toxin_YhaV: Toxin wit 62.8 9.5 0.00021 27.1 2.8 19 172-190 111-129 (140)
385 KOG1464 COP9 signalosome, subu 62.0 87 0.0019 25.6 18.2 202 80-282 20-252 (440)
386 KOG3807 Predicted membrane pro 61.7 99 0.0021 26.1 12.9 57 265-323 279-338 (556)
387 PRK12798 chemotaxis protein; R 61.6 1.1E+02 0.0024 26.8 21.1 237 92-339 87-338 (421)
388 KOG2396 HAT (Half-A-TPR) repea 61.6 1.2E+02 0.0027 27.3 20.9 238 71-324 303-558 (568)
389 PRK09857 putative transposase; 60.6 99 0.0022 25.8 9.8 66 264-330 209-274 (292)
390 cd08819 CARD_MDA5_2 Caspase ac 60.2 45 0.00098 21.7 7.2 16 168-183 48-63 (88)
391 PF02847 MA3: MA3 domain; Int 60.0 53 0.0011 22.4 6.6 22 231-252 7-28 (113)
392 PF09868 DUF2095: Uncharacteri 59.6 47 0.001 22.8 5.4 38 17-55 67-104 (128)
393 KOG1308 Hsp70-interacting prot 59.3 8.2 0.00018 32.3 2.4 90 203-294 126-215 (377)
394 KOG4567 GTPase-activating prot 58.9 1.1E+02 0.0023 25.7 9.7 71 141-216 263-343 (370)
395 PF06957 COPI_C: Coatomer (COP 58.8 1.3E+02 0.0028 26.6 10.8 171 15-205 122-349 (422)
396 PF10345 Cohesin_load: Cohesin 58.7 1.6E+02 0.0035 27.7 29.7 183 30-217 40-251 (608)
397 KOG0376 Serine-threonine phosp 58.4 40 0.00088 29.8 6.3 106 162-273 10-117 (476)
398 PF11663 Toxin_YhaV: Toxin wit 58.2 13 0.00029 26.4 2.9 32 203-236 107-138 (140)
399 PF14853 Fis1_TPR_C: Fis1 C-te 57.9 35 0.00076 19.7 5.0 38 16-55 6-43 (53)
400 KOG2066 Vacuolar assembly/sort 57.2 1.8E+02 0.004 27.8 21.9 74 18-102 363-439 (846)
401 COG5108 RPO41 Mitochondrial DN 57.1 1.1E+02 0.0024 28.7 8.9 91 51-148 33-130 (1117)
402 KOG4642 Chaperone-dependent E3 57.0 1E+02 0.0022 24.8 10.9 119 131-253 20-144 (284)
403 PF11817 Foie-gras_1: Foie gra 56.7 85 0.0018 25.4 7.8 58 265-322 182-244 (247)
404 COG4003 Uncharacterized protei 56.5 46 0.00099 21.2 4.7 34 17-51 37-70 (98)
405 KOG1258 mRNA processing protei 56.5 1.7E+02 0.0036 27.1 28.5 132 12-150 46-180 (577)
406 PRK11639 zinc uptake transcrip 56.0 85 0.0018 23.6 7.5 65 215-280 15-79 (169)
407 PF04762 IKI3: IKI3 family; I 55.6 2E+02 0.0043 28.9 11.2 198 161-359 699-916 (928)
408 COG2909 MalT ATP-dependent tra 54.8 2.2E+02 0.0047 27.9 23.7 292 28-329 298-651 (894)
409 PF09670 Cas_Cas02710: CRISPR- 53.8 1.5E+02 0.0033 25.9 10.9 53 166-219 141-197 (379)
410 KOG0686 COP9 signalosome, subu 53.7 1.5E+02 0.0033 25.9 15.2 92 87-180 151-253 (466)
411 PF09670 Cas_Cas02710: CRISPR- 53.7 1.5E+02 0.0033 25.9 11.0 57 93-150 138-198 (379)
412 PF12862 Apc5: Anaphase-promot 53.6 62 0.0013 21.3 6.5 57 58-115 10-70 (94)
413 PF11817 Foie-gras_1: Foie gra 53.4 1E+02 0.0022 24.9 7.7 59 229-287 181-244 (247)
414 PF02259 FAT: FAT domain; Int 53.4 1.4E+02 0.0031 25.4 26.0 68 153-220 143-213 (352)
415 KOG2396 HAT (Half-A-TPR) repea 53.1 1.8E+02 0.0038 26.4 21.9 230 105-349 301-548 (568)
416 cd07153 Fur_like Ferric uptake 51.7 51 0.0011 22.7 5.2 35 242-276 16-50 (116)
417 PF04097 Nic96: Nup93/Nic96; 51.3 2.2E+02 0.0048 26.9 22.1 46 12-59 113-158 (613)
418 PRK11639 zinc uptake transcrip 51.2 1E+02 0.0022 23.1 7.2 42 164-205 33-74 (169)
419 KOG1258 mRNA processing protei 51.1 2E+02 0.0044 26.5 32.6 97 15-115 83-180 (577)
420 KOG3364 Membrane protein invol 49.3 98 0.0021 22.3 9.5 23 92-114 77-99 (149)
421 KOG2062 26S proteasome regulat 49.2 2.5E+02 0.0054 27.0 20.8 158 19-184 67-238 (929)
422 PF01475 FUR: Ferric uptake re 49.1 48 0.001 23.0 4.7 44 266-309 12-55 (120)
423 smart00386 HAT HAT (Half-A-TPR 48.9 31 0.00068 16.5 3.9 14 242-255 3-16 (33)
424 PF02847 MA3: MA3 domain; Int 48.9 84 0.0018 21.4 7.1 62 195-258 6-69 (113)
425 PF10366 Vps39_1: Vacuolar sor 48.5 49 0.0011 22.7 4.4 26 264-289 42-67 (108)
426 COG2976 Uncharacterized protei 47.8 1.3E+02 0.0028 23.3 17.5 144 141-291 39-189 (207)
427 PF12796 Ank_2: Ankyrin repeat 47.7 42 0.00092 21.5 4.1 14 318-331 74-87 (89)
428 KOG2659 LisH motif-containing 47.3 1.4E+02 0.0031 23.7 10.5 98 83-182 23-129 (228)
429 PRK09462 fur ferric uptake reg 47.0 1.1E+02 0.0024 22.3 7.6 59 147-206 8-67 (148)
430 TIGR02508 type_III_yscG type I 46.7 89 0.0019 21.1 8.7 11 238-248 51-61 (115)
431 KOG4642 Chaperone-dependent E3 46.7 1.5E+02 0.0033 23.9 10.7 118 165-286 19-142 (284)
432 PF00244 14-3-3: 14-3-3 protei 46.5 1.5E+02 0.0033 23.8 9.9 57 91-147 6-63 (236)
433 PF10345 Cohesin_load: Cohesin 46.2 2.6E+02 0.0057 26.4 31.1 167 11-182 59-251 (608)
434 PRK08691 DNA polymerase III su 45.5 2.9E+02 0.0062 26.6 11.4 43 70-114 184-226 (709)
435 PRK09857 putative transposase; 45.4 1.8E+02 0.0039 24.3 8.6 64 161-225 211-274 (292)
436 PF08311 Mad3_BUB1_I: Mad3/BUB 45.4 1.1E+02 0.0023 21.7 9.5 43 104-146 81-124 (126)
437 PF02607 B12-binding_2: B12 bi 45.3 75 0.0016 19.9 5.2 39 273-311 13-51 (79)
438 cd07153 Fur_like Ferric uptake 44.7 61 0.0013 22.2 4.7 29 175-203 19-47 (116)
439 PF04090 RNA_pol_I_TF: RNA pol 44.6 1.5E+02 0.0032 23.1 6.9 28 228-255 43-70 (199)
440 PRK09462 fur ferric uptake reg 44.3 1.2E+02 0.0027 22.0 7.5 37 241-277 32-68 (148)
441 PRK08691 DNA polymerase III su 44.1 3E+02 0.0065 26.5 10.7 45 208-254 181-226 (709)
442 PF02184 HAT: HAT (Half-A-TPR) 43.1 47 0.001 16.9 3.0 13 277-289 3-15 (32)
443 COG2405 Predicted nucleic acid 42.7 62 0.0014 23.2 4.2 43 298-341 112-154 (157)
444 PF08424 NRDE-2: NRDE-2, neces 42.5 2.1E+02 0.0046 24.3 17.6 117 174-292 49-185 (321)
445 PF13762 MNE1: Mitochondrial s 42.3 1.3E+02 0.0029 21.9 13.6 82 88-169 41-128 (145)
446 KOG0686 COP9 signalosome, subu 42.0 2.4E+02 0.0053 24.8 15.1 174 122-304 151-352 (466)
447 PF11123 DNA_Packaging_2: DNA 41.2 89 0.0019 19.5 4.9 33 241-274 12-44 (82)
448 KOG2034 Vacuolar sorting prote 40.5 3.7E+02 0.008 26.4 26.3 35 242-276 609-643 (911)
449 PF01475 FUR: Ferric uptake re 40.4 63 0.0014 22.4 4.2 45 161-205 12-56 (120)
450 KOG4521 Nuclear pore complex, 39.8 4.4E+02 0.0094 27.1 14.1 52 159-211 986-1041(1480)
451 KOG1839 Uncharacterized protei 39.8 4.5E+02 0.0097 27.2 11.4 152 132-283 943-1121(1236)
452 KOG2582 COP9 signalosome, subu 39.7 2.5E+02 0.0054 24.3 13.6 54 273-326 289-346 (422)
453 PRK13342 recombination factor 39.6 2.7E+02 0.0059 24.7 16.9 33 134-166 243-275 (413)
454 KOG0128 RNA-binding protein SA 39.4 3.7E+02 0.0081 26.2 27.1 100 10-114 112-218 (881)
455 PF14669 Asp_Glu_race_2: Putat 39.1 1.8E+02 0.004 22.5 14.5 173 114-286 1-206 (233)
456 PRK14958 DNA polymerase III su 39.0 3.1E+02 0.0068 25.2 12.3 73 80-155 194-279 (509)
457 PRK14958 DNA polymerase III su 39.0 3.1E+02 0.0068 25.2 11.9 35 218-254 192-226 (509)
458 COG0790 FOG: TPR repeat, SEL1 38.8 2.2E+02 0.0049 23.5 23.7 51 136-189 92-146 (292)
459 KOG1308 Hsp70-interacting prot 38.8 22 0.00048 29.9 1.9 87 169-258 127-214 (377)
460 PF12926 MOZART2: Mitotic-spin 38.7 1.1E+02 0.0024 19.9 7.9 42 107-148 29-70 (88)
461 KOG3677 RNA polymerase I-assoc 38.6 2.6E+02 0.0057 24.7 7.9 18 129-146 280-297 (525)
462 PF11838 ERAP1_C: ERAP1-like C 38.6 2.4E+02 0.0052 23.7 22.1 17 8-24 15-31 (324)
463 PF08314 Sec39: Secretory path 37.9 3.9E+02 0.0084 25.9 11.1 30 8-37 429-458 (715)
464 KOG2297 Predicted translation 37.5 2.5E+02 0.0054 23.6 18.2 19 262-280 322-340 (412)
465 PF14561 TPR_20: Tetratricopep 37.3 1.2E+02 0.0026 19.9 8.8 31 260-290 21-51 (90)
466 KOG4521 Nuclear pore complex, 36.7 4.9E+02 0.011 26.8 14.8 124 87-213 984-1124(1480)
467 COG0819 TenA Putative transcri 36.5 2.2E+02 0.0047 22.6 8.5 29 217-245 100-128 (218)
468 KOG1498 26S proteasome regulat 36.4 3E+02 0.0064 24.1 13.8 222 134-362 25-279 (439)
469 PF10366 Vps39_1: Vacuolar sor 36.2 1.4E+02 0.0031 20.4 7.5 26 159-184 42-67 (108)
470 KOG2659 LisH motif-containing 35.5 2.3E+02 0.005 22.6 11.6 99 187-287 22-129 (228)
471 PRK11619 lytic murein transgly 35.4 4.1E+02 0.0088 25.4 28.3 118 204-324 254-374 (644)
472 PRK06645 DNA polymerase III su 35.3 3.6E+02 0.0078 24.8 10.6 32 80-113 203-234 (507)
473 KOG0890 Protein kinase of the 35.0 7E+02 0.015 28.1 24.6 62 261-325 1670-1731(2382)
474 PF03745 DUF309: Domain of unk 34.9 1E+02 0.0023 18.5 5.6 32 273-304 11-42 (62)
475 PF08870 DUF1832: Domain of un 34.6 1.1E+02 0.0023 21.3 4.4 15 70-84 9-23 (113)
476 KOG2582 COP9 signalosome, subu 34.4 3.1E+02 0.0067 23.8 13.6 198 89-291 105-346 (422)
477 PF08542 Rep_fac_C: Replicatio 34.3 81 0.0018 20.3 3.8 49 259-309 3-51 (89)
478 PRK10941 hypothetical protein; 34.2 2.7E+02 0.0058 23.0 10.5 54 233-287 188-241 (269)
479 PRK13342 recombination factor 34.1 3.4E+02 0.0073 24.1 19.1 21 205-225 244-264 (413)
480 KOG2062 26S proteasome regulat 34.0 4.4E+02 0.0096 25.5 16.3 184 66-255 39-239 (929)
481 KOG2471 TPR repeat-containing 34.0 2E+02 0.0044 26.0 6.8 108 94-202 248-380 (696)
482 PRK10941 hypothetical protein; 33.6 2.7E+02 0.0059 22.9 10.4 59 196-255 186-244 (269)
483 PF11768 DUF3312: Protein of u 33.0 4E+02 0.0086 24.6 10.6 22 161-182 413-434 (545)
484 PF07064 RIC1: RIC1; InterPro 32.7 2.8E+02 0.006 22.7 15.3 27 88-114 84-110 (258)
485 PF15297 CKAP2_C: Cytoskeleton 32.4 3.3E+02 0.0071 23.4 8.7 46 262-307 141-186 (353)
486 PF04124 Dor1: Dor1-like famil 32.1 3.3E+02 0.0071 23.4 8.7 23 16-38 111-133 (338)
487 PF10475 DUF2450: Protein of u 32.0 3E+02 0.0066 22.9 12.2 110 92-212 104-218 (291)
488 TIGR03184 DNA_S_dndE DNA sulfu 31.9 1.7E+02 0.0036 20.0 4.9 17 68-84 6-22 (105)
489 PF07678 A2M_comp: A-macroglob 31.9 2.7E+02 0.006 22.4 9.2 81 243-325 116-221 (246)
490 PRK14956 DNA polymerase III su 31.7 4E+02 0.0087 24.3 12.9 30 160-189 252-281 (484)
491 KOG2422 Uncharacterized conser 31.2 4.4E+02 0.0095 24.6 14.1 78 233-310 349-430 (665)
492 PF13934 ELYS: Nuclear pore co 31.1 2.7E+02 0.0059 22.2 14.9 97 167-274 89-185 (226)
493 PF00244 14-3-3: 14-3-3 protei 30.8 2.8E+02 0.0062 22.3 11.3 60 16-78 6-65 (236)
494 PF04910 Tcf25: Transcriptiona 30.5 3.6E+02 0.0079 23.4 20.9 56 163-218 110-166 (360)
495 PRK14963 DNA polymerase III su 30.5 4.3E+02 0.0094 24.3 10.3 17 170-186 255-271 (504)
496 PF04090 RNA_pol_I_TF: RNA pol 30.3 2.7E+02 0.0057 21.8 7.6 29 87-115 42-70 (199)
497 KOG3677 RNA polymerase I-assoc 30.1 3.9E+02 0.0085 23.7 9.0 58 160-218 239-299 (525)
498 PRK14956 DNA polymerase III su 29.9 4.3E+02 0.0094 24.1 13.2 30 221-252 197-226 (484)
499 smart00544 MA3 Domain in DAP-5 29.7 1.8E+02 0.004 19.7 9.1 60 230-291 6-67 (113)
500 PRK14951 DNA polymerase III su 29.1 5.1E+02 0.011 24.6 12.6 102 236-341 180-294 (618)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.1e-59 Score=430.38 Aligned_cols=334 Identities=18% Similarity=0.300 Sum_probs=234.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Q 017743 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88 (366)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 88 (366)
||..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.+ .+++|.++|++|.+ .|+.||..+
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G----~vd~A~~vf~eM~~-~Gv~PdvvT 509 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG----KVDAMFEVFHEMVN-AGVEANVHT 509 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc----CHHHHHHHHHHHHH-cCCCCCHHH
Confidence 6667777777777777777777777777777777777777777777776433 36677777777765 566677777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHH
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS--NQCKPDIITFNLLIDSY 166 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~ 166 (366)
|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 7777777777777777777777777667777777777777777777777777777777754 45666777777777777
Q ss_pred hccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 017743 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246 (366)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 246 (366)
++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 77777777777777777766667777777777777777777777777777777776777777777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCC
Q 017743 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326 (366)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 326 (366)
++|+.|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 77777777777777777777777777777777777777777666667777777777777777777777777777777667
Q ss_pred CCCChhHHHHHHHHhhccccc
Q 017743 327 IVPNKRFFLEALETFSSSLAG 347 (366)
Q Consensus 327 ~~~~~~~~~~ll~~~~~~~~~ 347 (366)
+.||..||..+|.+|++.+..
T Consensus 750 i~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 750 LCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCH
Confidence 777777777777777666553
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-58 Score=426.83 Aligned_cols=335 Identities=22% Similarity=0.356 Sum_probs=325.4
Q ss_pred ccccccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCC
Q 017743 3 KQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82 (366)
Q Consensus 3 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 82 (366)
+..|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+ ++++|+++|+.|.. .++
T Consensus 464 ~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G----~~eeAl~lf~~M~~-~Gv 538 (1060)
T PLN03218 464 QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG----QVAKAFGAYGIMRS-KNV 538 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc----CHHHHHHHHHHHHH-cCC
Confidence 4578999999999999999999999999999999999999999999999999999555 49999999999997 789
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHE--SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (366)
.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+
T Consensus 539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyn 618 (1060)
T PLN03218 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHH
Confidence 99999999999999999999999999999986 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC
Q 017743 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240 (366)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 240 (366)
.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|
T Consensus 619 sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G 698 (1060)
T PLN03218 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698 (1060)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHH
Q 017743 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320 (366)
Q Consensus 241 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 320 (366)
++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++++
T Consensus 699 ~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCChhHHHHHHHHhh
Q 017743 321 RMEQNGIVPNKRFFLEALETFS 342 (366)
Q Consensus 321 ~m~~~g~~~~~~~~~~ll~~~~ 342 (366)
+|.+.|+.||..+|+.++..|.
T Consensus 779 ~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 779 QAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999986543
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.3e-53 Score=388.03 Aligned_cols=328 Identities=19% Similarity=0.296 Sum_probs=235.5
Q ss_pred cccccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCC
Q 017743 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK 83 (366)
Q Consensus 4 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 83 (366)
..++.||..+|+.++.+|.+.++++.|.+++..|...|+.||..+|+.++.+|++.++ +++|.++|++|. .
T Consensus 116 ~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~----~~~A~~lf~~m~-----~ 186 (697)
T PLN03081 116 GCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGM----LIDARRLFDEMP-----E 186 (697)
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCC----HHHHHHHHhcCC-----C
Confidence 3456788888888888888888888888888888888888888888888888885544 888888888876 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH-----------------------------------HHHH
Q 017743 84 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY-----------------------------------NGVM 128 (366)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------------------------~~ll 128 (366)
||..+||.++.+|++.|++++|.++|++|.+.|+.|+..+| +.|+
T Consensus 187 ~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li 266 (697)
T PLN03081 187 RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266 (697)
T ss_pred CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHH
Confidence 77888888888888888888888888888776666655554 5556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHh
Q 017743 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208 (366)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 208 (366)
.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|+++
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~ 342 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchH
Confidence 66666666666666666664 24666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 017743 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288 (366)
Q Consensus 209 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (366)
+|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|+.|.+ ||..+||.||.+|++.|+.++|.++|++|.
T Consensus 343 ~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred HHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666667666666643 466677777777777777777777777777
Q ss_pred hCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh-CCCCCChhHHHHHHHHhhcccccC
Q 017743 289 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ-NGIVPNKRFFLEALETFSSSLAGS 348 (366)
Q Consensus 289 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~ 348 (366)
+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+ .|+.|+..+|..++..+++.|...
T Consensus 419 ~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 777777777777777777777777777777777764 477777777777777777766543
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2e-52 Score=382.81 Aligned_cols=326 Identities=16% Similarity=0.261 Sum_probs=292.1
Q ss_pred cccccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcC----
Q 017743 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGM---- 79 (366)
Q Consensus 4 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~---- 79 (366)
..|+.||..+|+.++..|++.|++++|.++|++|. .||..+|+.++.+|++.+ ++++|+++|++|.+.
T Consensus 151 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g----~~~~A~~lf~~M~~~g~~p 222 (697)
T PLN03081 151 SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAG----NYREAFALFREMWEDGSDA 222 (697)
T ss_pred HhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCc----CHHHHHHHHHHHHHhCCCC
Confidence 45677777777777777777777777777777775 367777777777777443 377777777777541
Q ss_pred ------------------------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 017743 80 ------------------------------ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129 (366)
Q Consensus 80 ------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 129 (366)
.|+.||..+|++|+.+|++.|++++|.++|++|. .+|..+|+.++.
T Consensus 223 ~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~ 298 (697)
T PLN03081 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLA 298 (697)
T ss_pred ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHH
Confidence 2345566667888899999999999999999985 469999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhH
Q 017743 130 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209 (366)
Q Consensus 130 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 209 (366)
+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|..||..+|+.++.+|++.|++++
T Consensus 299 ~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~ 378 (697)
T PLN03081 299 GYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMED 378 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 210 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+
T Consensus 379 A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 379 ARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999997 4788999999999999999999999999999999999999999999999999999999999999986
Q ss_pred -CCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcccccC
Q 017743 290 -MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 348 (366)
Q Consensus 290 -~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 348 (366)
.|+.|+..+|+.++.+|.+.|++++|.+++++| ++.|+..+|..++.+|...++..
T Consensus 455 ~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 455 NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLE 511 (697)
T ss_pred hcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcH
Confidence 699999999999999999999999999998765 68899999999999999988764
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.3e-51 Score=383.31 Aligned_cols=332 Identities=19% Similarity=0.244 Sum_probs=253.1
Q ss_pred ccccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCC
Q 017743 5 RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP 84 (366)
Q Consensus 5 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 84 (366)
.|+.||..+|+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.++.+|++. |.+++|.++|++|. .|
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~----g~~~~A~~vf~~m~-----~~ 352 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL----GSWGEAEKVFSRME-----TK 352 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc----CCHHHHHHHHhhCC-----CC
Confidence 4556666666666666666666666666666666666666666666666666633 44777777777776 46
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (366)
|..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++++.++++.|.+.|+.|+..+++.++.
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 77778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHH
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 244 (366)
+|++.|++++|.++|++|. .+|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|++.|+++.
T Consensus 433 ~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~ 507 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMC 507 (857)
T ss_pred HHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHH
Confidence 8888888888888887773 35666777777777777777777777777764 367777777666655555555554
Q ss_pred HHHHHHHHHhCCC------------------------------CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 017743 245 AREIFDELSKLGK------------------------------DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294 (366)
Q Consensus 245 a~~~~~~~~~~~~------------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 294 (366)
+.+++..+.+.|+ .+|..+|+++|.+|++.|+.++|.++|++|.+.|+.|
T Consensus 508 ~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred hHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 4444444444332 4678889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhchHHHHHHHHHHHH-hCCCCCChhHHHHHHHHhhcccccCCC
Q 017743 295 DSSTYKLLYKAYTKANMKELVQKLLKRME-QNGIVPNKRFFLEALETFSSSLAGSQS 350 (366)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-~~g~~~~~~~~~~ll~~~~~~~~~~~~ 350 (366)
|..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|..++..+++.|.....
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999998 679999999999999999999875433
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.6e-51 Score=383.97 Aligned_cols=336 Identities=20% Similarity=0.259 Sum_probs=264.1
Q ss_pred cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchH--------------------------
Q 017743 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD-------------------------- 61 (366)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~-------------------------- 61 (366)
.||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|+..++
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 356666777777777777777777777777666666666666555544432111
Q ss_pred -----HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 017743 62 -----KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 136 (366)
Q Consensus 62 -----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 136 (366)
+.|++++|.++|++|. .||..+||++|.+|++.|++++|.++|.+|.+.|+.||..||+.++.+|++.|+
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 3345788888888886 478888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHH
Q 017743 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 216 (366)
Q Consensus 137 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 216 (366)
.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++| ..||..+|+.+|.+|.+.|++++|.++|++
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m----~~~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM----ETKDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888887 346777888888888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC------
Q 017743 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM------ 290 (366)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------ 290 (366)
|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~ 459 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWT 459 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHH
Confidence 88888888888888888888888888888888888777777777777777777777777777777766665432
Q ss_pred ------------------------CC------------------------------------------------------
Q 017743 291 ------------------------GV------------------------------------------------------ 292 (366)
Q Consensus 291 ------------------------~~------------------------------------------------------ 292 (366)
++
T Consensus 460 ~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~ 539 (857)
T PLN03077 460 SIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539 (857)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC
Confidence 12
Q ss_pred -----------CCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcccccCCCCC
Q 017743 293 -----------TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGS 352 (366)
Q Consensus 293 -----------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~ 352 (366)
.||..+|+.++.+|.+.|+.++|.++|++|.+.|+.||..||..+|.+|+++|.......
T Consensus 540 ~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 540 MNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 345667888888899999999999999999999999999999999999999987544333
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=3e-23 Score=179.19 Aligned_cols=315 Identities=12% Similarity=0.022 Sum_probs=254.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCC--CHHHHHHHH
Q 017743 17 LIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP--NIVTYNILL 93 (366)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~ 93 (366)
....+...|++++|...|+++.+. .| +..++..+...+. ..|++++|..+++.+.......+ +...+..+.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~----~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFR----RRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHH----HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 344567889999999999999986 34 4456777777777 44559999999999886321111 135678889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhcc
Q 017743 94 RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD----IITFNLLIDSYGKR 169 (366)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 169 (366)
..|...|+++.|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 99999999999999999998763 45678899999999999999999999999988654332 22455677788899
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 017743 170 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249 (366)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 249 (366)
|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...+
T Consensus 194 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 194 GDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred CCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998753 33566788888999999999999999999997642333567889999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh---hchHHHHHHHHHHHHhCC
Q 017743 250 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK---ANMKELVQKLLKRMEQNG 326 (366)
Q Consensus 250 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g 326 (366)
+.+.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..++++|.+.+
T Consensus 273 ~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 273 RRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 9998874 45566788999999999999999999998875 6899899988887765 568999999999999998
Q ss_pred CCCChhHHHHHHHHhhcccccCC
Q 017743 327 IVPNKRFFLEALETFSSSLAGSQ 349 (366)
Q Consensus 327 ~~~~~~~~~~ll~~~~~~~~~~~ 349 (366)
+.|++. ..|++.|-...
T Consensus 349 ~~~~p~------~~c~~cg~~~~ 365 (389)
T PRK11788 349 LKRKPR------YRCRNCGFTAR 365 (389)
T ss_pred HhCCCC------EECCCCCCCCc
Confidence 888887 22555555433
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.92 E-value=2.2e-21 Score=185.65 Aligned_cols=321 Identities=13% Similarity=0.092 Sum_probs=210.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (366)
...+..++..+.+.|++++|.++++.+.+.. +.+...|..+...+... +++++|+..|+.+.+.. +.+...+.
T Consensus 567 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~--~~~~~~~~ 639 (899)
T TIGR02917 567 IEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAA----GDLNKAVSSFKKLLALQ--PDSALALL 639 (899)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhC--CCChHHHH
Confidence 3444455555555555555555555554432 22444555555555432 33666666666655322 33445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 017743 91 ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 170 (366)
.+...+...|++++|..+++++.+.. +.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+...|
T Consensus 640 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 640 LLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCC
Confidence 66666666666666666666665542 2345556666666666666666666666666553 335556666666777777
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH
Q 017743 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250 (366)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 250 (366)
++++|.+.|+.+...+ |+..++..+...+.+.|++++|.+.++.+.+.. +.+...+..+...|...|++++|...|+
T Consensus 718 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 718 DYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred CHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 7777777777776643 333556666777777777777777777776654 4556677777777777888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCC
Q 017743 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330 (366)
Q Consensus 251 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~ 330 (366)
.+.+..+. +..+++.+...+...|+ .+|+.+++++.+.. +-+..++..+...+...|++++|.++++++.+.+.. +
T Consensus 795 ~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~ 870 (899)
T TIGR02917 795 TVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-A 870 (899)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C
Confidence 87776543 67777778888888887 77888888777653 235566777888888889999999999999987643 7
Q ss_pred hhHHHHHHHHhhccccc
Q 017743 331 KRFFLEALETFSSSLAG 347 (366)
Q Consensus 331 ~~~~~~ll~~~~~~~~~ 347 (366)
..++..+...+...|..
T Consensus 871 ~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 871 AAIRYHLALALLATGRK 887 (899)
T ss_pred hHHHHHHHHHHHHcCCH
Confidence 77888888888887765
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.92 E-value=3.1e-21 Score=184.59 Aligned_cols=303 Identities=13% Similarity=0.038 Sum_probs=265.1
Q ss_pred ccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCH
Q 017743 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI 86 (366)
Q Consensus 7 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 86 (366)
.+.+..+|..+...+.+.|++++|...|+.+.+.. +.+...+..+...+. ..+++++|...|+++.+. .+.+.
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~--~~~~~ 669 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA----VMKNYAKAITSLKRALEL--KPDNT 669 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH----HcCCHHHHHHHHHHHHhc--CCCCH
Confidence 35577899999999999999999999999998763 225566777777776 445599999999998853 25668
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (366)
.++..++..+...|++++|.++++.+.+.. +.+...+..+...+...|++++|.+.|+.+...+ |+..++..+..++
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 746 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHH
Confidence 899999999999999999999999998875 4577788889999999999999999999998874 4557788899999
Q ss_pred hccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 017743 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246 (366)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 246 (366)
.+.|++++|.+.++.+... .+.+...+..+...|...|++++|...|+++.+.. +.+..++..+...+...|+ .+|.
T Consensus 747 ~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~ 823 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRAL 823 (899)
T ss_pred HHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHH
Confidence 9999999999999999886 44578899999999999999999999999999876 5678899999999999999 8899
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
..++.+.+..+. +...+..+...+...|++++|.+.++++.+.+.. +..++..+..++.+.|++++|.+++++|++
T Consensus 824 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 824 EYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 999999887544 6778888999999999999999999999998754 899999999999999999999999999864
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=8.3e-21 Score=163.98 Aligned_cols=275 Identities=13% Similarity=0.109 Sum_probs=230.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD---IYTYNGVMDAYGKNGMIK 138 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~ 138 (366)
..+++++|+..|.++.+.. +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|+++
T Consensus 47 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred hcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 4455889999999998643 45667899999999999999999999999987542221 246788899999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCcHhHHHHHH
Q 017743 139 EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL----PTFNSMIINYGKARLQGKAEYVF 214 (366)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~ 214 (366)
+|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999998763 456788999999999999999999999999886544322 24556777888999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 017743 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294 (366)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 294 (366)
+++.+.. +.+...+..+...+...|++++|.++++.+.+.++.....+++.++.+|...|++++|...++++.+. .|
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 9998764 34567888899999999999999999999998754434567889999999999999999999999886 46
Q ss_pred CHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 017743 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344 (366)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 344 (366)
+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+...
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~ 328 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAE 328 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhc
Confidence 7677789999999999999999999999885 68988888888877643
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=3.1e-18 Score=155.35 Aligned_cols=319 Identities=10% Similarity=-0.013 Sum_probs=234.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (366)
...+..++......|++++|...|+.+... .|+ ...+..+...+. ..|++++|+..+++..... +.+...+
T Consensus 76 ~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~----~~g~~~~Ai~~l~~Al~l~--P~~~~a~ 147 (656)
T PRK15174 76 RDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLL----KSKQYATVADLAEQAWLAF--SGNSQIF 147 (656)
T ss_pred hhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC--CCcHHHH
Confidence 445555666777789999999999988875 454 344555555555 4445888998888887532 4556778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 017743 90 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR 169 (366)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (366)
..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.+....++...+..+..++...
T Consensus 148 ~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 225 (656)
T PRK15174 148 ALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV 225 (656)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC
Confidence 88888899999999999988887765422 33333333 34778899999999998887764334445555566778889
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhH----HHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHH
Q 017743 170 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK----AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245 (366)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 245 (366)
|++++|...+++..... +.+...+..+...+...|++++ |...+++..+.. +.+...+..+...+...|++++|
T Consensus 226 g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA 303 (656)
T PRK15174 226 GKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKA 303 (656)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999988763 3467777888888899999885 788898888764 44577888899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS-STYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
...++...+..+. +...+..+..++...|++++|...++.+...+ |+. ..+..+..++...|+.++|...|++..+
T Consensus 304 ~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 304 IPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999998887654 56777888899999999999999999888754 443 3344456778889999999999999887
Q ss_pred CCCCCChhHHHHHHHHhhcc
Q 017743 325 NGIVPNKRFFLEALETFSSS 344 (366)
Q Consensus 325 ~g~~~~~~~~~~ll~~~~~~ 344 (366)
..-.-....|...+..+...
T Consensus 381 ~~P~~~~~~~~ea~~~~~~~ 400 (656)
T PRK15174 381 ARASHLPQSFEEGLLALDGQ 400 (656)
T ss_pred hChhhchhhHHHHHHHHHHH
Confidence 53222234444444444443
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=3.3e-18 Score=155.19 Aligned_cols=318 Identities=8% Similarity=-0.040 Sum_probs=249.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 017743 15 SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLR 94 (366)
Q Consensus 15 ~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 94 (366)
..++..+.+.|++++|..+++........+....+ .+..+.. ..|+++.|+..++++.... +.+...+..+..
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~-~l~~~~l----~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~ 118 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLR-RWVISPL----ASSQPDAVLQVVNKLLAVN--VCQPEDVLLVAS 118 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHH-HHhhhHh----hcCCHHHHHHHHHHHHHhC--CCChHHHHHHHH
Confidence 44667788999999999999999887433322333 3333444 4556999999999998643 556778889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhH
Q 017743 95 ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174 (366)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 174 (366)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHH
Confidence 9999999999999999999863 345678888999999999999999999988766433 33334333 34788999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHH----HHHHHH
Q 017743 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR----AREIFD 250 (366)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~ 250 (366)
|...++.+......++...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++ |...|+
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 99999998876444455555666778889999999999999999875 4567788889999999999986 899999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCC
Q 017743 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330 (366)
Q Consensus 251 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~ 330 (366)
...+..+. +...+..+...+...|++++|...+++...... .+...+..+..++...|++++|...++++.+.+ |+
T Consensus 275 ~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~ 350 (656)
T PRK15174 275 HALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GV 350 (656)
T ss_pred HHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc
Confidence 99987655 788999999999999999999999999998753 356778888999999999999999999998753 54
Q ss_pred hhH-HHHHHHHhhccccc
Q 017743 331 KRF-FLEALETFSSSLAG 347 (366)
Q Consensus 331 ~~~-~~~ll~~~~~~~~~ 347 (366)
... +..+-.++...|..
T Consensus 351 ~~~~~~~~a~al~~~G~~ 368 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKT 368 (656)
T ss_pred chHHHHHHHHHHHHCCCH
Confidence 433 22233445555543
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=2.2e-16 Score=143.75 Aligned_cols=88 Identities=13% Similarity=0.046 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 017743 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 93 (366)
Q Consensus 14 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 93 (366)
+......+.+.|++++|+..|++.+.. .|+...|..+-.++. ..+++++|++.+....+.. +.+...|..+.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~----~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a 201 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHN----ALGDWEKVVEDTTAALELD--PDYSKALNRRA 201 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHH----HhCCHHHHHHHHHHHHHcC--CCCHHHHHHHH
Confidence 344556666677777777777776653 455555555555555 3344666666666665432 33455666666
Q ss_pred HHHHhcCCHHHHHHHH
Q 017743 94 RACAQARNVDQVNALF 109 (366)
Q Consensus 94 ~~~~~~~~~~~a~~~~ 109 (366)
.++...|++++|...|
T Consensus 202 ~a~~~lg~~~eA~~~~ 217 (615)
T TIGR00990 202 NAYDGLGKYADALLDL 217 (615)
T ss_pred HHHHHcCCHHHHHHHH
Confidence 6666666666665433
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=6e-16 Score=140.86 Aligned_cols=255 Identities=12% Similarity=0.008 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 017743 65 ALAKALGYFQKMKGMERCKP-NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143 (366)
Q Consensus 65 ~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 143 (366)
.+++|++.|+...+.....| ....|+.+...+...|++++|...+++.++.. +-+...|..+...+...|++++|...
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34555555555553221122 23455566666666677777777776666542 12344566666666666777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCC
Q 017743 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223 (366)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 223 (366)
|++..+.. +.+..++..+...+...|++++|...|++.+... +.+...+..+...+.+.|++++|...++...+.. +
T Consensus 388 ~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P 464 (615)
T TIGR00990 388 FDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-P 464 (615)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 77666553 2245666666666667777777777777666642 2245555566666666777777777777666542 3
Q ss_pred CCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH
Q 017743 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS------TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297 (366)
Q Consensus 224 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 297 (366)
.+...++.+...+...|++++|...|+.........+.. .++.....+...|++++|..++++....+. .+..
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~ 543 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDI 543 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHH
Confidence 345566666666667777777777777666543221111 111122223335677777777776665432 2344
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 298 TYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.+..+...+...|++++|+++|++..+
T Consensus 544 a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566666777777777777777766655
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=5.1e-16 Score=125.28 Aligned_cols=323 Identities=16% Similarity=0.185 Sum_probs=251.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchH-------------------------HHHHH
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD-------------------------KAKAL 66 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~-------------------------~~~~~ 66 (366)
.+=|.|+. ....|.+.++.-+|+.|.+.|+..+...-..+++..+..+. +.|.+
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 34455555 55688999999999999999988888777777765443221 11222
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 017743 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 146 (366)
Q Consensus 67 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 146 (366)
. .-+|+. .+.+..++.+||.++++--..+.|.+++++......+.+..+||.+|.+..-... .+++.+
T Consensus 196 A--dL~~E~------~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~E 263 (625)
T KOG4422|consen 196 A--DLLFET------LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAE 263 (625)
T ss_pred H--HHHHhh------cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHH
Confidence 1 122222 2457789999999999999999999999999988888999999999987654332 789999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCChhH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhH-HHHHHHHHHh--
Q 017743 147 MKSNQCKPDIITFNLLIDSYGKRQAFDK----MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK-AEYVFQKMTA-- 219 (366)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~-- 219 (366)
|....+.||..|+|+++.+..+.|+++. |.+++.+|.+-|+.|...+|..+|..+++.++..+ +..++..+..
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 9999999999999999999999998865 46788899999999999999999999999888754 5555555443
Q ss_pred --CCCC---C-CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcCChhHHHHHHHH
Q 017743 220 --MKYT---P-SFITYECIITMYGYCDNVSRAREIFDELSKLG----KDMK---VSTLNAMLEAYCMNGLPTEADLLFEN 286 (366)
Q Consensus 220 --~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (366)
+.++ | |...+...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....++....+.-...|+.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2 34567777888889999999988876665421 2222 23356677778888889999999999
Q ss_pred hhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccccc
Q 017743 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347 (366)
Q Consensus 287 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 347 (366)
|.-.-+-|+..+...++++....|.++-..+++..+...|..-....-..+++.+++....
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~h 484 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLH 484 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCC
Confidence 9988788999999999999999999999999999999999877777777788888776543
No 16
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=2.5e-15 Score=121.33 Aligned_cols=307 Identities=14% Similarity=0.155 Sum_probs=222.6
Q ss_pred cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHH
Q 017743 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 87 (366)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 87 (366)
+-+..+|..+|.++|+-...+.|.++|.+-.....+.+..++|.+|.+-. +..-.+++.+|.. ....||..
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S--------~~~~K~Lv~EMis-qkm~Pnl~ 274 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS--------YSVGKKLVAEMIS-QKMTPNLF 274 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH--------hhccHHHHHHHHH-hhcCCchH
Confidence 44678999999999999999999999999988888899999999998765 3344678888887 66899999
Q ss_pred HHHHHHHHHHhcCCHH----HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCCC----C
Q 017743 88 TYNILLRACAQARNVD----QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE-MESVLSRMKS----NQCK----P 154 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~----~ 154 (366)
|||+++.+..+.|+++ .|.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. ..++ -
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 9999999999999875 467788999999999999999999999999887744 4455555432 2222 2
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHhcC----CCCC---HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHH
Q 017743 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK----EKPT---LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 227 (366)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 227 (366)
|...|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....++....+....+|+.|.-.-+-|+..
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch
Confidence 45566777888888899888888766553321 2232 2345566677778888888888888888777778888
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-Ch---hH----------HHHH-------HHH
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LP---TE----------ADLL-------FEN 286 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~---~~----------a~~~-------~~~ 286 (366)
+...++++....++++-..++|..+...|...+...-.-++...++.. .+ +. |..+ -.+
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R 514 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIR 514 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 888888888888888888888888877765444444444444444433 11 00 0111 112
Q ss_pred hhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 287 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 287 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
|... .......+..+-.+.+.|..++|.+++..+.++
T Consensus 515 ~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 515 QRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred HHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 2222 334455666666677777888887777777544
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=2.6e-16 Score=132.66 Aligned_cols=306 Identities=14% Similarity=0.174 Sum_probs=186.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHhhchH---------------------------
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRD--------------------------- 61 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~~~~--------------------------- 61 (366)
-.++|..+...+-..|++++|+.+|+.+++. +| ....|..+-.++...++
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhH
Confidence 3567888888888888888888888888765 33 22333333333332221
Q ss_pred -------------------------------------HHHHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHhcCCHH
Q 017743 62 -------------------------------------KAKALAKALGYFQKMKGMERCKPN-IVTYNILLRACAQARNVD 103 (366)
Q Consensus 62 -------------------------------------~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 103 (366)
..|....|++.|++.... .|+ ...|-.|...|...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC---CCcchHHHhhHHHHHHHHhcch
Confidence 123333333333333321 222 233444444444444444
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHH
Q 017743 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD-IITFNLLIDSYGKRQAFDKMEQVFKSL 182 (366)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 182 (366)
+|...|.+..... +-....+-.+...|...|.++-|+..+++..+. .|+ ...|+.+..++-..|+..+|.+.|++.
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 4444444443321 112333444444455566666666666666654 233 556777777777777777777777777
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCH
Q 017743 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261 (366)
Q Consensus 183 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 261 (366)
+... +.-..+.+.+...+...|.++.|..+|....+. .|. ....+.|...|-..|++++|...+++..+-.+. -.
T Consensus 347 L~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fA 422 (966)
T KOG4626|consen 347 LRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FA 422 (966)
T ss_pred HHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HH
Confidence 6642 223455666777777777777777777776654 333 456677777777778888888888777764332 25
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCCh
Q 017743 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD-SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331 (366)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 331 (366)
..|+.+...|-..|+.+.|...+.+.+..+ |. ...++.|...|...|+..+|+.-|+...+ ++||.
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 667777777888888888888887777643 33 56677888888888888888888888776 45554
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.79 E-value=7.8e-15 Score=142.23 Aligned_cols=309 Identities=10% Similarity=0.075 Sum_probs=214.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHH--------HhhchHHHHHHHHHHHHHHHHhcCC
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITA--------HLHTRDKAKALAKALGYFQKMKGME 80 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~--------~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (366)
+..++..+...+.+.|++++|...|++..+..... ....|..++.. .+......+++++|+..|++.....
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~ 381 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD 381 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 67788889999999999999999999988753221 11122222110 0111114456899999999988643
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH---------------------------------
Q 017743 81 RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV--------------------------------- 127 (366)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------------------------- 127 (366)
+.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+
T Consensus 382 --P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~ 458 (1157)
T PRK11447 382 --NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERS 458 (1157)
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566778888999999999999999999988753 2223333222
Q ss_pred ---------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 017743 128 ---------MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 198 (366)
Q Consensus 128 ---------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 198 (366)
...+...|++++|.+.|++..+... .+...+..+...|.+.|++++|...++++.+... .+...+..+.
T Consensus 459 l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~a 536 (1157)
T PRK11447 459 LQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYG 536 (1157)
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHH
Confidence 2334457888888888888877642 2566777788888888999999988888876432 2333333232
Q ss_pred HHHHhcCcHhHHHHHHHHHHhC---------------------------------------CCCCCHHHHHHHHHHhhcc
Q 017743 199 INYGKARLQGKAEYVFQKMTAM---------------------------------------KYTPSFITYECIITMYGYC 239 (366)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~~~~ 239 (366)
..+...++.++|...++.+... ..+.+...+..+...+.+.
T Consensus 537 l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~ 616 (1157)
T PRK11447 537 LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQR 616 (1157)
T ss_pred HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 3333344444444333322100 1134455667788888889
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHH
Q 017743 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319 (366)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (366)
|++++|...|+.+.+..+. +...+..++..+...|++++|++.++...+.. +.+...+..+..++...|++++|..++
T Consensus 617 g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~ 694 (1157)
T PRK11447 617 GDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTF 694 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999887655 78889999999999999999999999887653 235666777888888999999999999
Q ss_pred HHHHhC
Q 017743 320 KRMEQN 325 (366)
Q Consensus 320 ~~m~~~ 325 (366)
+++...
T Consensus 695 ~~al~~ 700 (1157)
T PRK11447 695 NRLIPQ 700 (1157)
T ss_pred HHHhhh
Confidence 998864
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.77 E-value=1.1e-14 Score=141.32 Aligned_cols=310 Identities=12% Similarity=0.057 Sum_probs=198.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHhhch---------------------------
Q 017743 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAHLHTR--------------------------- 60 (366)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~~--------------------------- 60 (366)
.+..++..+...+...|++++|.+.|++..+. .|+ ...+..+...+....
T Consensus 383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~ 460 (1157)
T PRK11447 383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQ 460 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 35667778889999999999999999999875 343 333443433331100
Q ss_pred -----------HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 017743 61 -----------DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 129 (366)
Q Consensus 61 -----------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 129 (366)
...+++++|+..|++..+.. +.+...+..+...|.+.|++++|...++++.+.. +.+...+..+..
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al 537 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGL 537 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 01233444444444444321 2233344444445555555555555555544332 112223333333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 017743 130 AYGKNGMIKEMESVLSRMKSNQCKPDII---------TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200 (366)
Q Consensus 130 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 200 (366)
.+...++.++|...++.+......++.. .+......+...|+.++|..+++. .+.+...+..+...
T Consensus 538 ~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~ 612 (1157)
T PRK11447 538 YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADW 612 (1157)
T ss_pred HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHH
Confidence 3344455555555444433221111111 111234455666777777766651 34456677788899
Q ss_pred HHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 017743 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280 (366)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 280 (366)
+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.++.+.+.... +...+..+..++...|++++|
T Consensus 613 ~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA 690 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAAA 690 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999999875 456788999999999999999999999998876433 566778888899999999999
Q ss_pred HHHHHHhhhCCCC--C---CHHHHHHHHHHHHhhchHHHHHHHHHHHHh-CCCCCC
Q 017743 281 DLLFENSHNMGVT--P---DSSTYKLLYKAYTKANMKELVQKLLKRMEQ-NGIVPN 330 (366)
Q Consensus 281 ~~~~~~~~~~~~~--p---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~g~~~~ 330 (366)
.++++.+...... | +...+..+.+.+...|++++|+..|++... .|+.|+
T Consensus 691 ~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 691 QRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred HHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 9999998875322 2 234666678889999999999999999863 455543
No 20
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=2.7e-14 Score=122.62 Aligned_cols=284 Identities=13% Similarity=0.072 Sum_probs=212.9
Q ss_pred cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH--HHHHHHHhcCC
Q 017743 24 KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN--ILLRACAQARN 101 (366)
Q Consensus 24 ~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ 101 (366)
.|++++|.+.+....+.. +....+.++.+..- ...|+++.|.+.+.++.+. .|+..... .....+...|+
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA--~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~ 168 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAA--QQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNE 168 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHH--HHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCC
Confidence 599999998888765532 12222233322210 1445699999999998763 55553332 34678889999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCChhH
Q 017743 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI-------ITFNLLIDSYGKRQAFDK 174 (366)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~ 174 (366)
++.|.+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+.
T Consensus 169 ~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~ 247 (398)
T PRK10747 169 NHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEG 247 (398)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999998875 446778888899999999999999999999988654322 123333444444555666
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 017743 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (366)
..++++.+-.. .+.++.....+...+...|+.++|..++++..+. +|+.... ++.+....++.+++.+..+...+
T Consensus 248 l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 248 LKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK 322 (398)
T ss_pred HHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh
Confidence 67777766443 3457888888999999999999999999998874 5555332 23333456999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 255 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
..+. |+..+..+...|.+.+++++|.+.|+...+. .|+..++..+...+.+.|+.++|..++++-..
T Consensus 323 ~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 323 QHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7655 7888899999999999999999999999885 68999999999999999999999999987654
No 21
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.74 E-value=3e-15 Score=126.35 Aligned_cols=279 Identities=15% Similarity=0.174 Sum_probs=231.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (366)
.+|..|...+-..|+...|++-|++.... .|+ ...|-.|-..|. ..+.+++|+..+.+..... +.....+.
T Consensus 219 iawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~k----e~~~~d~Avs~Y~rAl~lr--pn~A~a~g 290 (966)
T KOG4626|consen 219 IAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYK----EARIFDRAVSCYLRALNLR--PNHAVAHG 290 (966)
T ss_pred eeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHH----HHhcchHHHHHHHHHHhcC--Ccchhhcc
Confidence 35677777888889999999999998864 343 334555555554 6667999999998887542 44567888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 017743 91 ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 170 (366)
.+...|...|.++.|+..|++.++.. +--...|+.|..++-..|++.+|.+.+.+..... +......+.|...|...|
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~ 368 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQG 368 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhc
Confidence 99999999999999999999999864 2246789999999999999999999999998863 335778899999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCcHHHHHHH
Q 017743 171 AFDKMEQVFKSLMHSKEKPT-LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYCDNVSRAREI 248 (366)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 248 (366)
.++.|..+|....+ +.|. ...++.+...|.++|++++|+..+++.++. .|+ ...|+.+...|-..|+.+.|.+.
T Consensus 369 ~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~ 444 (966)
T KOG4626|consen 369 KIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQC 444 (966)
T ss_pred cchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHH
Confidence 99999999999988 4443 567899999999999999999999999876 566 57899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHH
Q 017743 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD-SSTYKLLYKAYT 307 (366)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 307 (366)
+.+....++. -...++.|...|-..|+..+|+.-++...+. +|| +..|..++.+.-
T Consensus 445 y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 445 YTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHH
Confidence 9999987654 3678899999999999999999999999875 555 456666666643
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.74 E-value=1.1e-13 Score=128.51 Aligned_cols=309 Identities=10% Similarity=0.007 Sum_probs=199.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHH
Q 017743 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 87 (366)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 87 (366)
.+...+..+...+.+.|++++|.++|+...+. .|+ ...+..+...+. ..++.++|+..+++..... +.+..
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~----~~g~~~eA~~~l~~~l~~~--P~~~~ 118 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLA----DAGQYDEALVKAKQLVSGA--PDKAN 118 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhC--CCCHH
Confidence 34446788888888889999999988888765 343 344455555555 4455888888888887532 44555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH----------------------
Q 017743 88 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS---------------------- 145 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~---------------------- 145 (366)
+..+..++...|+.++|...++++.+.. +.+...+..+..++...+..++|++.++
T Consensus 119 -~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r 196 (765)
T PRK10049 119 -LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVR 196 (765)
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 7788888888888999988888888764 2244444555555555555554443333
Q ss_pred ------------------------HHHHC-CCCCCHH-HHH----HHHHHHhccCChhHHHHHHHHHHhcCCC-CCHHHH
Q 017743 146 ------------------------RMKSN-QCKPDII-TFN----LLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTF 194 (366)
Q Consensus 146 ------------------------~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 194 (366)
.+.+. ...|+.. .+. ..+.++...|++++|+..|+.+...+.. |+. ..
T Consensus 197 ~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~ 275 (765)
T PRK10049 197 LSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQ 275 (765)
T ss_pred hhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HH
Confidence 33321 1112111 111 1123345667888888888888776432 322 12
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHhCCCCC---CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC-----------CCC
Q 017743 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTP---SFITYECIITMYGYCDNVSRAREIFDELSKLGK-----------DMK 260 (366)
Q Consensus 195 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~ 260 (366)
..+...|...|++++|...|+.+.+..... .......+..++...|++++|...++.+....+ .|+
T Consensus 276 ~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~ 355 (765)
T PRK10049 276 RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN 355 (765)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC
Confidence 224667788888888888888876543111 124455666677788888888888888776532 122
Q ss_pred ---HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCCh
Q 017743 261 ---VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331 (366)
Q Consensus 261 ---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 331 (366)
...+..+...+...|++++|+++++++.... +.+...+..+...+...|++++|+..+++..+. .|+.
T Consensus 356 ~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~ 426 (765)
T PRK10049 356 DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRN 426 (765)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCC
Confidence 2345566777778888888888888877664 335777778888888888888888888887773 3554
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.74 E-value=2.2e-13 Score=126.55 Aligned_cols=320 Identities=13% Similarity=0.045 Sum_probs=230.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Q 017743 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88 (366)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 88 (366)
.+...+..++..+...|++++|+..++++.+. .|+...+..+-.++. ..++.++|+..++++.+.. +.+...
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~----~~g~~~~Al~~l~~al~~~--P~~~~~ 152 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYK----RAGRHWDELRAMTQALPRA--PQTQQY 152 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 34667778888899999999999999999876 444333555555555 4455899999999988642 445556
Q ss_pred HHHHHHHHHhcCCHHHHHHHH----------------------------------------------HHHHHc-CCCCCh
Q 017743 89 YNILLRACAQARNVDQVNALF----------------------------------------------KELHES-ILAPDI 121 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~----------------------------------------------~~~~~~-~~~~~~ 121 (366)
+..+...+...+..+.|.+.+ +.+.+. ...|+.
T Consensus 153 ~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~ 232 (765)
T PRK10049 153 PTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDA 232 (765)
T ss_pred HHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 666666666666655444333 333322 111221
Q ss_pred h-hHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC---CHH
Q 017743 122 Y-TYN----GVMDAYGKNGMIKEMESVLSRMKSNQCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP---TLP 192 (366)
Q Consensus 122 ~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~ 192 (366)
. .+. ..+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|+.+|+++....... ...
T Consensus 233 ~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~ 311 (765)
T PRK10049 233 TADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDE 311 (765)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence 1 111 1134456779999999999999887532 332 22335778999999999999999987653221 134
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKY-----------TPS---FITYECIITMYGYCDNVSRAREIFDELSKLGKD 258 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 258 (366)
....+..++...|++++|..+++.+..... .|+ ...+..+...+...|++++|..+++.+....+.
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~ 391 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG 391 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 566677788999999999999999887531 123 235567778888999999999999999987655
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 017743 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338 (366)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 338 (366)
+...+..+...+...|++++|++.+++..... +.+...+...+..+...|++++|..+++++++. .|+......+=
T Consensus 392 -n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~ 467 (765)
T PRK10049 392 -NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLA 467 (765)
T ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 68899999999999999999999999998865 234677778888899999999999999999984 46655544444
Q ss_pred HHh
Q 017743 339 ETF 341 (366)
Q Consensus 339 ~~~ 341 (366)
+..
T Consensus 468 ~~~ 470 (765)
T PRK10049 468 RAR 470 (765)
T ss_pred HHH
Confidence 443
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=2.3e-13 Score=127.15 Aligned_cols=304 Identities=12% Similarity=0.027 Sum_probs=226.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-C-CCCChhhHHHHHHHHhhchH---------------------HHHHH
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-G-CRPDPSVYNALITAHLHTRD---------------------KAKAL 66 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-g-~~p~~~~~~~ll~~~~~~~~---------------------~~~~~ 66 (366)
+......+.-...+.|+.++|..+|+..... + ..++.....-++..+..... -.+++
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 4455555666677899999999999998763 1 12223333355555543321 02222
Q ss_pred HHH---HHHHHHHhcCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 017743 67 AKA---LGYFQKMKGMERCKP--NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141 (366)
Q Consensus 67 ~~a---~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 141 (366)
.++ ...+..... ..++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|.
T Consensus 455 ~~~~~~~~~~~~al~--~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi 529 (987)
T PRK09782 455 PGIADNCPAIVRLLG--DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATAL 529 (987)
T ss_pred hhhhhhHHHHHHhcc--cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHH
Confidence 222 223333332 1144 67788888888876 8888999988888765 356544444455557899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
..++++... +|+...+..+..++.+.|++++|...++...... +.....+..+.......|++++|...+++..+.
T Consensus 530 ~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l- 605 (987)
T PRK09782 530 AAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI- 605 (987)
T ss_pred HHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-
Confidence 999998665 4455556777888899999999999999998864 223334444444555669999999999999987
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHH
Q 017743 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301 (366)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 301 (366)
.|+...+..+..++.+.|+.++|...++......+. +...++.+..++...|++++|+..+++..+..+ -+...+..
T Consensus 606 -~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~n 682 (987)
T PRK09782 606 -APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQ 682 (987)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 467888999999999999999999999999998765 778889999999999999999999999988753 36788999
Q ss_pred HHHHHHhhchHHHHHHHHHHHHhC
Q 017743 302 LYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
+..++...|++++|...+++..+.
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999874
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=7.9e-17 Score=132.21 Aligned_cols=255 Identities=15% Similarity=0.099 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 141 (366)
..|++++|+++++........+.+...|..+...+...++++.|.+.++++...+.. +...+..++.. ...+++++|.
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~ 97 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEAL 97 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccccc
Confidence 445577777777443321101233444555555666677777777777777765432 44555566655 5677777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC
Q 017743 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK-EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220 (366)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 220 (366)
+++....+. .++...+..++..+...++++.+.++++.+.... .+.+...|..+...+.+.|+.++|...+++..+.
T Consensus 98 ~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 98 KLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp ----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred ccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 777665544 2455556667777777777777777777765432 2345666777777777777777777777777766
Q ss_pred CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHH
Q 017743 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 300 (366)
Q Consensus 221 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 300 (366)
. +.+......++..+...|+.+++..+++...+.. +.++..+..+..+|...|+.++|...+++..... +.|+.+..
T Consensus 176 ~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~ 252 (280)
T PF13429_consen 176 D-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLL 252 (280)
T ss_dssp --TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHH
T ss_pred C-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccc
Confidence 3 3346667777777777777777777777766653 2355567777777777788888888877777654 33677777
Q ss_pred HHHHHHHhhchHHHHHHHHHHHH
Q 017743 301 LLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 301 ~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
.+..++...|+.++|..+.++..
T Consensus 253 ~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 253 AYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHT----------------
T ss_pred ccccccccccccccccccccccc
Confidence 77777777888887777766654
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=1.7e-16 Score=130.29 Aligned_cols=269 Identities=15% Similarity=0.128 Sum_probs=111.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Q 017743 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88 (366)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 88 (366)
|+...+ .+...+.+.|++++|+++++........|+...|-.++..++ ...++.+.|...++++...+ +-+...
T Consensus 7 ~~~~~l-~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La---~~~~~~~~A~~ay~~l~~~~--~~~~~~ 80 (280)
T PF13429_consen 7 PSEEAL-RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLA---WSLGDYDEAIEAYEKLLASD--KANPQD 80 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc-cccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccc--cccccc
Confidence 444444 568888899999999999977665543455555554444333 25567999999999988643 335566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHh
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYG 167 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 167 (366)
+..++.. ...+++++|.+++....+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.
T Consensus 81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~ 157 (280)
T PF13429_consen 81 YERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE 157 (280)
T ss_dssp ----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred ccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 7777777 6889999999998877655 3566777888888999999999999999977543 3457788888899999
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHH
Q 017743 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247 (366)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 247 (366)
+.|+.++|++.+++.++.. +.|......++..+...|+.+++..+++...+.. +.++..+..+..++...|+.++|..
T Consensus 158 ~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~ 235 (280)
T PF13429_consen 158 QLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALE 235 (280)
T ss_dssp HCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccc
Confidence 9999999999999998863 3357788888999999999999888888887654 4555678889999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
.|+...+.++. |+.....+..++...|+.++|.++..+...
T Consensus 236 ~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 236 YLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHSTT--HHHHHHHHHHHT-----------------
T ss_pred ccccccccccc-cccccccccccccccccccccccccccccc
Confidence 99999887544 888889999999999999999988877543
No 27
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=2.1e-13 Score=117.80 Aligned_cols=289 Identities=11% Similarity=0.017 Sum_probs=202.8
Q ss_pred hcCChhHHHHHHHHHHhcCCCCChhhHHHH-HHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCH--HHHHHHHHHHHhc
Q 017743 23 KKGQTRLAMWLFSEMRNSGCRPDPSVYNAL-ITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI--VTYNILLRACAQA 99 (366)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l-l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 99 (366)
..|+++.|.+.+....+. .|+...+-.+ -.+.. ..|+.+.|.+.+.+..+. .|+. .........+...
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~----~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQ----QRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQ 166 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHC
Confidence 578999999999887765 3443332222 22333 445589999999887652 3443 2344457888889
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---hccCChhHHH
Q 017743 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY---GKRQAFDKME 176 (366)
Q Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~ 176 (366)
|+++.|...++.+.+.. +-+......+...+.+.|++++|.+.+..+.+.+..+.......-..++ ...+..+...
T Consensus 167 ~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~ 245 (409)
T TIGR00540 167 NELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI 245 (409)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 99999999999999875 3366788888999999999999999999999886543322211111221 2223333334
Q ss_pred HHHHHHHhcCC---CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHH---HHHHHHHhhccCcHHHHHHHHH
Q 017743 177 QVFKSLMHSKE---KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT---YECIITMYGYCDNVSRAREIFD 250 (366)
Q Consensus 177 ~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~ 250 (366)
+.+..+..... +.+...+..+...+...|+.+.|.+++++..+.. |+... .....-.....++.+.+.+.++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 45555554322 1378888889999999999999999999998864 33321 1111122234577888888888
Q ss_pred HHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 251 ELSKLGKDMKV--STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 251 ~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
...+..+. |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-..
T Consensus 324 ~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 324 KQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88776443 55 667788999999999999999999544444578888899999999999999999999987543
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.66 E-value=9e-12 Score=114.38 Aligned_cols=190 Identities=11% Similarity=0.081 Sum_probs=98.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCcH
Q 017743 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-----KPTLPTFNSMIINYGKARLQ 207 (366)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~ 207 (366)
..++..++++.|+.+...+.+....+-..+.++|...+++++|..++..+..... .++......|.-++...+++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQL 383 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccH
Confidence 3444444555555555444333334445555555556666666666665544321 12232334555555566666
Q ss_pred hHHHHHHHHHHhCCC-----------CC--CH-HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 017743 208 GKAEYVFQKMTAMKY-----------TP--SF-ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273 (366)
Q Consensus 208 ~~a~~~~~~~~~~~~-----------~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 273 (366)
++|..+++.+.+... .| |- ..+..++..+...|++.+|++.++.+....+. |......+...+..
T Consensus 384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~ 462 (822)
T PRK14574 384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLA 462 (822)
T ss_pred HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 666666665554210 01 11 22333444555556666666666666555433 55566666666666
Q ss_pred cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 274 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.|.+.+|...++...... +-+..+......++...+++.+|..+.+.+.+
T Consensus 463 Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 463 RDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred cCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 666666666665544432 22445555555666666666666666655544
No 29
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=1.1e-12 Score=102.59 Aligned_cols=217 Identities=14% Similarity=0.151 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh------hhHHHHHHHHHhcCCHHH
Q 017743 66 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI------YTYNGVMDAYGKNGMIKE 139 (366)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~ 139 (366)
.++|.++|-+|.+.+ +.+..+--+|.+.|.+.|..|.|+++.+.+.++ ||. .....|..-|...|-+|.
T Consensus 51 ~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 51 PDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred cchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 444555555444311 223333344444555555555555555544443 121 111223333444445555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCcHhHHHHHHH
Q 017743 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT----LPTFNSMIINYGKARLQGKAEYVFQ 215 (366)
Q Consensus 140 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~ 215 (366)
|+++|..+.+.+. --......|+..|-...+|++|+++-+++...+..+. ...|.-+...+....+.+.|..+++
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 5555555444321 1233344444555555555555555554444333221 1123333333333444455555554
Q ss_pred HHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
+..+.+ +.....--.+.+.....|+++.|.+.++.+.+.++..-..+...|..+|.+.|+.++....+..+.+
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444432 1112222233344444455555555555555544444444444555555555555555555544444
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.65 E-value=2e-12 Score=121.03 Aligned_cols=262 Identities=8% Similarity=-0.049 Sum_probs=197.1
Q ss_pred hhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 017743 46 PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125 (366)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 125 (366)
...|..+-.++.. +..++|+..+.+.... .|+......+...+...|++++|...|+++... +|+...+.
T Consensus 477 ~~a~~~LG~~l~~-----~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~ 546 (987)
T PRK09782 477 AAAWNRLAKCYRD-----TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLL 546 (987)
T ss_pred HHHHHHHHHHHHh-----CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHH
Confidence 4445555544432 4577788877776643 466554444555567899999999999987654 45555667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 017743 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205 (366)
Q Consensus 126 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 205 (366)
.+..++.+.|++++|...+++..+.. +.+...+..+.......|++++|...+++..+. .|+...+..+...+.+.|
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCC
Confidence 77788889999999999999998764 223333334444455669999999999999874 456888888999999999
Q ss_pred cHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 017743 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285 (366)
Q Consensus 206 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 285 (366)
++++|...+++..... +.+...+..+..++...|++++|...++...+..+. +...+..+..++...|++++|+..++
T Consensus 624 ~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 624 NVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999875 455778888888999999999999999999887655 78889999999999999999999999
Q ss_pred HhhhCCCCCC-HHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 286 NSHNMGVTPD-SSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 286 ~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
+..+.. |+ ..+.........+..+++.+.+-+++-..
T Consensus 702 ~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 702 LVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 998754 44 34444555556666667777766665544
No 31
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=3.3e-12 Score=99.90 Aligned_cols=303 Identities=11% Similarity=0.051 Sum_probs=223.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC--HHHHHH
Q 017743 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN--IVTYNI 91 (366)
Q Consensus 14 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ 91 (366)
|-.-++. .-..+.++|.++|-+|.+. .|...-.+.-+..+.+ ..|..++|+++.+.+.+..+.+.+ ......
T Consensus 39 Yv~GlNf-LLs~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfR---sRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~q 112 (389)
T COG2956 39 YVKGLNF-LLSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFR---SRGEVDRAIRIHQTLLESPDLTFEQRLLALQQ 112 (389)
T ss_pred HHhHHHH-HhhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHH---hcchHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4434443 3457889999999999874 3333333333333332 556699999999999874333222 234556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHh
Q 017743 92 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD----IITFNLLIDSYG 167 (366)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~ 167 (366)
|.+-|...|-+|.|.++|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+. ...|..+...+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 7788999999999999999998865 23556788899999999999999999999988765544 235666777777
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHH
Q 017743 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247 (366)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 247 (366)
...+.+.|..++.+..+.+.. ++..--.+.......|++..|.+.++.+.+.+..--..+...|..+|...|+.++...
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 192 ASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 889999999999999886432 4445556677788999999999999999988655556788999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh---hchHHHHHHHHHHHHh
Q 017743 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK---ANMKELVQKLLKRMEQ 324 (366)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~ 324 (366)
.+..+.+....+ ..-..+........-.+.|...+.+-... +|+...+..++..-.. .|...+-...++.|..
T Consensus 271 fL~~~~~~~~g~--~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 271 FLRRAMETNTGA--DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHccCCc--cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 999998875443 34444555444555566676666655554 6999999999987644 4557777888888876
Q ss_pred CCCC
Q 017743 325 NGIV 328 (366)
Q Consensus 325 ~g~~ 328 (366)
..++
T Consensus 347 e~l~ 350 (389)
T COG2956 347 EQLR 350 (389)
T ss_pred HHHh
Confidence 5443
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=1.7e-12 Score=111.50 Aligned_cols=273 Identities=8% Similarity=0.001 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCCHHH
Q 017743 63 AKALAKALGYFQKMKGMERCKPNIV-TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN--GVMDAYGKNGMIKE 139 (366)
Q Consensus 63 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~ 139 (366)
.|+++.|.+.+....+. .+++. .|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|++++
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 36688999888876642 22333 3444455668999999999999999875 45554333 33678889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHH-------HHHHHHHHHHhcCcHhHHHH
Q 017743 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP-------TFNSMIINYGKARLQGKAEY 212 (366)
Q Consensus 140 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~a~~ 212 (366)
|...++.+.+.. +-+......+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999998886 3478888999999999999999999999999876553321 23333433344455566666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 017743 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV 292 (366)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 292 (366)
+++.+.+. .+.++.....+...+...|+.++|.++++...+.. ++.... ++.+....++++++.+..+...+...
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 66666443 25578888999999999999999999999998853 344322 34444566999999999999988753
Q ss_pred CCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcccccCC
Q 017743 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQ 349 (366)
Q Consensus 293 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 349 (366)
-|...+..+.+.|.+.+++++|.+.|+...+ ..|+...+..+-..+...|....
T Consensus 326 -~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 326 -DTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEE 379 (398)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHH
Confidence 3677888999999999999999999999998 46999998888888888877543
No 33
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=4.6e-12 Score=103.76 Aligned_cols=312 Identities=12% Similarity=0.079 Sum_probs=226.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHH
Q 017743 19 AVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP-NIVTYNILLRACA 97 (366)
Q Consensus 19 ~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 97 (366)
.++....+.+++.+-.+.....|.. +..-+.+.+.++.. ...++++|+.+|+++.+.+.... |..+|..++ |+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~-~~~~i~~~~A~~~y---~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv 308 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFP-NSMYIKTQIAAASY---NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCC-ccHHHHHHHHHHHh---hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HH
Confidence 4455556777777777777777654 33333333333321 34458888888888887543322 456777766 44
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHH
Q 017743 98 QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177 (366)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 177 (366)
+..+-..+ .+.+-...--+.-+.|...+.+-|+-.++.++|...|+...+.+.. ....|+.+.+-|...++...|++
T Consensus 309 ~~~~skLs--~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 309 KNDKSKLS--YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HhhhHHHH--HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 43322211 1111111111234557777788888899999999999999987533 67889999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC
Q 017743 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK 257 (366)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 257 (366)
-++..++- .+.|-..|..+.++|.-.+.+.-|+-.|++..+.. +-|...|.+|..+|.+.++.++|.+.|......|-
T Consensus 386 sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 99999886 34488999999999999999999999999999875 66789999999999999999999999999998763
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh----CCCCCC--HHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCCh
Q 017743 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHN----MGVTPD--SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331 (366)
Q Consensus 258 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 331 (366)
. +...+..|.+.|-+.++.++|...|.+.++ .|...+ ...-..|...+.+.+++++|..+....... .+..
T Consensus 464 t-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~ 540 (559)
T KOG1155|consen 464 T-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETEC 540 (559)
T ss_pred c-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchH
Confidence 3 668899999999999999999988887664 233322 223334667788999999998877666654 4555
Q ss_pred hHHHHHHHHhhcc
Q 017743 332 RFFLEALETFSSS 344 (366)
Q Consensus 332 ~~~~~ll~~~~~~ 344 (366)
.--..+++.+.+.
T Consensus 541 eeak~LlReir~~ 553 (559)
T KOG1155|consen 541 EEAKALLREIRKI 553 (559)
T ss_pred HHHHHHHHHHHHh
Confidence 5566666665544
No 34
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.63 E-value=1.2e-11 Score=113.55 Aligned_cols=294 Identities=10% Similarity=0.046 Sum_probs=210.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCh--hhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 017743 19 AVMGKKGQTRLAMWLFSEMRNSGCRPDP--SVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 96 (366)
Q Consensus 19 ~~~~~~~~~~~A~~~~~~~~~~g~~p~~--~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (366)
-...+.|+++.|++.|++..+. .|+. ..+ .++..+... |+.++|+..+++... ..+........+...+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~----G~~~~A~~~~eka~~--p~n~~~~~llalA~ly 112 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWA----GRDQEVIDVYERYQS--SMNISSRGLASAARAY 112 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHc----CCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHH
Confidence 3466899999999999999876 4554 234 666666643 558899999998873 1133344444446688
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHH
Q 017743 97 AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176 (366)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 176 (366)
...|++++|.++|+++.+.. +-+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|+
T Consensus 113 ~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHH
Confidence 88899999999999999875 335677777888889999999999999999876 556666655555555566776699
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHH-----------------------------------------
Q 017743 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ----------------------------------------- 215 (366)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~----------------------------------------- 215 (366)
+.++++.+.. +.+...+..++.++.+.|-...|.++.+
T Consensus 190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 9999998863 3355555556655555554444433333
Q ss_pred -------HHHhC-CCCCCH-H----HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 017743 216 -------KMTAM-KYTPSF-I----TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282 (366)
Q Consensus 216 -------~~~~~-~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 282 (366)
.+... +-.|.. . +..-.+-++...++..++++.|+.+...+.+....+-..+..+|...+.+++|..
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 22211 111221 1 1223345667889999999999999988866556788899999999999999999
Q ss_pred HHHHhhhCC-----CCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 283 LFENSHNMG-----VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 283 ~~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
++..+.... ..++......|.-++...+++++|..+++++.+.
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 999986543 1234444678899999999999999999999873
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=1.5e-12 Score=111.16 Aligned_cols=281 Identities=15% Similarity=0.126 Sum_probs=207.9
Q ss_pred ChhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHhcCCHH
Q 017743 26 QTRLAMWLFSEMRNSGCRPDP-SVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK-PNIVTYNILLRACAQARNVD 103 (366)
Q Consensus 26 ~~~~A~~~~~~~~~~g~~p~~-~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 103 (366)
+..+|...|..+... .++. .+...+-.+|. ....+++|.++|+.+.+..... .+...|.+.+-.+-+.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayF----El~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~---- 403 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYF----ELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE---- 403 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----
Confidence 567888888885543 3333 33445555565 5566889999998887654332 3566777776544321
Q ss_pred HHHHH-HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChhHHHHHHHH
Q 017743 104 QVNAL-FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP-DIITFNLLIDSYGKRQAFDKMEQVFKS 181 (366)
Q Consensus 104 ~a~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 181 (366)
-+... -+.+.+.. +-.+.+|-++..+|.-+++.+.|++.|+...+. .| ...+|+.+..-+.....+|.|...|+.
T Consensus 404 v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 404 VALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 12222 22333332 446789999999999999999999999998876 34 678888888888889999999999998
Q ss_pred HHhcCCCCCHH---HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC
Q 017743 182 LMHSKEKPTLP---TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 258 (366)
Q Consensus 182 ~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 258 (366)
.+. .|+. .|.-+...|.+.++++.|+-.|++..+.+ +-+.+....+...+-+.|+.++|++++++....+.+
T Consensus 481 Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 481 ALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred hhc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 854 3444 44456677889999999999999988876 456677778888888999999999999998887665
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCC
Q 017743 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326 (366)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 326 (366)
|+..--..+..+...+++++|+..++++++.- +-+...|..+.+.|.+.|+.+.|+.-|.-+.+..
T Consensus 556 -n~l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 556 -NPLCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred -CchhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 55555556677778899999999999998852 3356778888889999999999998888887744
No 36
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=3.2e-11 Score=97.20 Aligned_cols=287 Identities=12% Similarity=0.074 Sum_probs=215.9
Q ss_pred cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHH
Q 017743 24 KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD 103 (366)
Q Consensus 24 ~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 103 (366)
.|+|.+|..+..+-.+.+-. .+.+.++.+-+- ...|+.+.+-.++.+..+.. -.++...+-+..+.....|+.+
T Consensus 97 eG~~~qAEkl~~rnae~~e~---p~l~~l~aA~AA--~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ---PVLAYLLAAEAA--QQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc---hHHHHHHHHHHH--HhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCch
Confidence 58999999998887776533 333444433221 24566888889998887631 2456667778888899999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCChhHHH
Q 017743 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI-------ITFNLLIDSYGKRQAFDKME 176 (366)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~ 176 (366)
.|..-++++.+.+ +-+.........+|.+.|++.+...++..+.+.|.-.+. .+|..+++-....+..+.-.
T Consensus 171 aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~ 249 (400)
T COG3071 171 AARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK 249 (400)
T ss_pred hHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 9999999888875 346777888889999999999999999999988865443 45666777666666666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 017743 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
..++..-.. ...++..-..++.-+.+.|+.++|.++.++..+.+..|+ ...+ -.+.+.++...-.+..+...+.-
T Consensus 250 ~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 250 TWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhC
Confidence 666666443 445667777888888999999999999999988876666 2222 23456677777777776665543
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 257 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
+. ++..+.+|...|.+++.|.+|...|+...+ ..|+..+|..+..++.+.|+..+|..+.++..-.
T Consensus 325 ~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 325 PE-DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 22 557888999999999999999999997776 4789999999999999999999999988887643
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=1.3e-12 Score=111.55 Aligned_cols=270 Identities=12% Similarity=0.025 Sum_probs=208.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
Q 017743 13 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGC--RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90 (366)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~--~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (366)
+...+..+|...+++++|..+|+.+.+... --+...|...+..+- +...----|..+.+.. +..+.+|.
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~Ls~Laq~Li~~~------~~sPesWc 425 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVALSYLAQDLIDTD------PNSPESWC 425 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHHHHHHHHHHhhC------CCCcHHHH
Confidence 445677899999999999999999987521 126678888876542 1111112222233222 45678999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 017743 91 ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 170 (366)
++.++|.-.++.+.|++.|++..+.+ +-...+|+.+..-+.....+|.|...|+........ +-..|.-+...|.+.+
T Consensus 426 a~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 426 ALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQE 503 (638)
T ss_pred HhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhheeccc
Confidence 99999999999999999999999864 227788999999999999999999999998754211 3344555677899999
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH
Q 017743 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250 (366)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 250 (366)
+++.|+-.|++..+-++. +......+...+.+.|+.++|++++++..... +.|+..--..+..+...++.++|+..++
T Consensus 504 k~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LE 581 (638)
T KOG1126|consen 504 KLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELE 581 (638)
T ss_pred hhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHH
Confidence 999999999999885433 56666777888889999999999999998776 3344444445556667899999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 017743 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296 (366)
Q Consensus 251 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 296 (366)
++++.-++ +...+-.+...|.+.|+.+.|+.-|.-+.+.+.++..
T Consensus 582 eLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 582 ELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99997544 6778889999999999999999999988887655543
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.60 E-value=1.6e-11 Score=106.10 Aligned_cols=282 Identities=9% Similarity=-0.024 Sum_probs=203.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCCHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPN-IVTYNILLRACAQARNVDQVNALFKELHESILAPDIY--TYNGVMDAYGKNGMIK 138 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~ 138 (366)
..|+++.|.+.+.+..+. .|+ ...+-....+....|+.+.|.+.+.+..+.. |+.. ........+...|+++
T Consensus 96 ~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred hCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 446799999999887753 454 3445556788888999999999999987653 4443 3444578888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH---HhcCcHhHHHHHHH
Q 017743 139 EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY---GKARLQGKAEYVFQ 215 (366)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~~~~~~a~~~~~ 215 (366)
.|...++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.+..++......-..++ ...+..+.+.+.+.
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999885 3367788899999999999999999999999886543332212111222 22233333344555
Q ss_pred HHHhCC---CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 017743 216 KMTAMK---YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST-LNAMLEAYCMNGLPTEADLLFENSHNMG 291 (366)
Q Consensus 216 ~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (366)
.+.+.. .+.+...+..+...+...|+.++|.+++++..+..+...... ...........++.+.+.+.++...+..
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 544432 123788899999999999999999999999998754422111 1112222234577888999998887753
Q ss_pred CCCCH--HHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcccccCCC
Q 017743 292 VTPDS--STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 350 (366)
Q Consensus 292 ~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~ 350 (366)
+-|+ ....++...+.+.|++++|.+.|+........|+...+..+-..+...|.....
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEA 389 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 2244 566789999999999999999999655555679998888888888888776443
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3e-11 Score=99.06 Aligned_cols=165 Identities=15% Similarity=0.124 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (366)
+.|+..+.+-|+-.++.++|...|++.++.+. .....|+.+..-|....+...|.+-++..++.+ +.|...|-.|.++
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHH
Confidence 34455556666777889999999999988643 356789999999999999999999999999986 6788999999999
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHH
Q 017743 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315 (366)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 315 (366)
|...+...-|+-.|++.....+. |...|.+|..+|.+.++.++|++.|......| ..+...+..|.+.+-+.++.++|
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999987554 89999999999999999999999999999877 33778999999999999999999
Q ss_pred HHHHHHHHh
Q 017743 316 QKLLKRMEQ 324 (366)
Q Consensus 316 ~~~~~~m~~ 324 (366)
...|.+-++
T Consensus 486 a~~yek~v~ 494 (559)
T KOG1155|consen 486 AQYYEKYVE 494 (559)
T ss_pred HHHHHHHHH
Confidence 999888765
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=99.56 E-value=2.8e-11 Score=108.61 Aligned_cols=271 Identities=8% Similarity=-0.047 Sum_probs=189.2
Q ss_pred ChhhHHHHHHHHhhch-HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHH
Q 017743 45 DPSVYNALITAHLHTR-DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ---------ARNVDQVNALFKELHE 114 (366)
Q Consensus 45 ~~~~~~~ll~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~ 114 (366)
+...|...+.+..... ...+.+++|+..|++..+.. +.+...|..+..++.. .+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 4445556666532211 13456889999999988643 3345566666655442 2458899999999998
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHH
Q 017743 115 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 194 (366)
Q Consensus 115 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 194 (366)
.. +-+..++..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...+++..+..+. +...+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 75 3367778888888899999999999999998875 335677888889999999999999999999886443 22333
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 017743 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274 (366)
Q Consensus 195 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 274 (366)
..++..+...|++++|...+++......+-+...+..+..++...|+.++|...+..+...... +....+.+...|...
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhcc
Confidence 3344456678999999999999876542224556777888888999999999999987765332 455566676777777
Q ss_pred CChhHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCC
Q 017743 275 GLPTEADLLFENSHNM-GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326 (366)
Q Consensus 275 g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 326 (366)
| ++|...++.+.+. +-.|...-+ +...+.-.|+.+.+..+ +++.+.|
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7 4777777766543 112222222 44445556777777666 7777654
No 41
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.55 E-value=2.2e-11 Score=97.42 Aligned_cols=197 Identities=11% Similarity=0.089 Sum_probs=107.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 017743 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203 (366)
Q Consensus 124 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 203 (366)
+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 3444444444455555555544444332 1233444444455555555555555555554432 1233444445555555
Q ss_pred cCcHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 017743 204 ARLQGKAEYVFQKMTAMKY-TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282 (366)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 282 (366)
.|++++|...++....... +.....+..+..++...|++++|...++...+.... +...+..+...+...|++++|..
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555554321 112334555566666667777777777666655433 45566666667777777777777
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 283 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.+++.... .+.+...+..+...+...|+.+.|..+.+.+.+
T Consensus 191 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 191 YLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77766655 233455566666666677777777766666544
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=1.1e-11 Score=101.61 Aligned_cols=207 Identities=11% Similarity=0.077 Sum_probs=161.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHH
Q 017743 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213 (366)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 213 (366)
.|++++|.+.+++.......-....|+ +.-.+-..|+.++|++.|-++..- ...+......+...|....+...|+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 578889999998887653222222222 333466789999999999887553 344677777888888888999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC
Q 017743 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 293 (366)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 293 (366)
+.+.... ++.|+.+.+.|...|-+.|+-..|.+.+-.--+. ++.+..+...|...|....-+++++.+|++..- ++
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 8877654 4667889999999999999999998876554443 455888889999999999999999999998754 68
Q ss_pred CCHHHHHHHHHHHH-hhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccccc
Q 017743 294 PDSSTYKLLYKAYT-KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347 (366)
Q Consensus 294 p~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 347 (366)
|+..-|..++..|. +.|++..|..+|+...++ ++-|..++.-+++.+...|..
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 99999998888765 579999999999998764 667788888888888777654
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=3.3e-11 Score=98.80 Aligned_cols=282 Identities=11% Similarity=0.077 Sum_probs=207.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 017743 19 AVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98 (366)
Q Consensus 19 ~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 98 (366)
..+.++|+++.|++++.-+.+..-+.-+..-+.|-..+.-. ...++..|.++-+.....+ .-|......-......
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flq--ggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQ--GGKDFADAQQYADIALNID--RYNAAALTNKGNIAFA 502 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHh--cccchhHHHHHHHHHhccc--ccCHHHhhcCCceeee
Confidence 45778999999999998887543222222222222211111 1234777777777766433 3344444334444556
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHH
Q 017743 99 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178 (366)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 178 (366)
.|+++.|...|.+.+...-.-....| .+.-.+-..|++++|++.|-++... +..+..+...+...|-...+...|+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 89999999999999875322111222 2233466789999999999887543 234788888889999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC
Q 017743 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 258 (366)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 258 (366)
+.+.... ++.|+...+.+...|-+.|+-..|.+.+-.--+. ++.+..+...|...|....-+++++..|+...- +.
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 9887654 6678999999999999999999999887665544 467788999999999999999999999998765 67
Q ss_pred CCHHHHHHHHHHHH-hcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhch
Q 017743 259 MKVSTLNAMLEAYC-MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311 (366)
Q Consensus 259 ~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 311 (366)
|+..-|..++..|. +.|++.+|.++++...+. ++-|......|++.+...|.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 89999998886654 589999999999998765 56689999999998877664
No 44
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.51 E-value=5e-11 Score=95.35 Aligned_cols=202 Identities=11% Similarity=0.028 Sum_probs=163.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 017743 84 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 163 (366)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 163 (366)
.....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 345677888889999999999999999988764 3356777888889999999999999999988764 33567778888
Q ss_pred HHHhccCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcH
Q 017743 164 DSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242 (366)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 242 (366)
..+...|++++|.+.+++...... ......+..+...+...|++++|...+.+..... +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 889999999999999999876432 2234567777888889999999999999988764 34566788888999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 243 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
++|...++...+.. ..+...+..+...+...|+.++|..+++.+..
T Consensus 186 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999988763 34667777888888899999999998887654
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.51 E-value=1.3e-10 Score=104.43 Aligned_cols=269 Identities=12% Similarity=-0.004 Sum_probs=187.0
Q ss_pred CHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhcCCCCChh-hHHHHHHHHhhch-----HHHHHHHHHHHHHHHHhc
Q 017743 10 DTGIYSKLIAVMGK-----KGQTRLAMWLFSEMRNSGCRPDPS-VYNALITAHLHTR-----DKAKALAKALGYFQKMKG 78 (366)
Q Consensus 10 ~~~~~~~li~~~~~-----~~~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~~~~~~-----~~~~~~~~a~~~~~~~~~ 78 (366)
+...|...+.+... .+++++|.+.|++..+. .|+.. .|..+-.++...+ ...+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555555555322 23568999999999876 56543 3443333322111 134568999999999886
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 017743 79 MERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 158 (366)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 158 (366)
.. +.+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +...
T Consensus 333 ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 333 LD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred cC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 43 5577888889899999999999999999999875 335677888899999999999999999999887433 2333
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHhh
Q 017743 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS-FITYECIITMYG 237 (366)
Q Consensus 159 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 237 (366)
+..++..+...|++++|...+++......+.+...+..+..++...|+.++|...+.++... .|+ ....+.+...++
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 33444456678999999999999877533335566777888888999999999999987655 344 444556666677
Q ss_pred ccCcHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 017743 238 YCDNVSRAREIFDELSKLG-KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (366)
..| +.|...++.+.+.. -.+....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 47777777766531 11222222 44445556776766655 7776654
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=1.8e-10 Score=92.91 Aligned_cols=282 Identities=10% Similarity=0.015 Sum_probs=222.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 141 (366)
..|++.+|++...+-.+.. +-....|..-+.+.-+.|+.+.+.+++.+.-+....++....-+........|+.+.|.
T Consensus 96 ~eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 4477999999998876532 33445677778888899999999999999987644556666777788899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHH-------HHHHHHHHHHhcCcHhHHHHHH
Q 017743 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP-------TFNSMIINYGKARLQGKAEYVF 214 (366)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~a~~~~ 214 (366)
.-+.++.+.+.. ++........+|.+.|++.....++..+.+.+.-.+.. +|..+++-....+..+.-...|
T Consensus 174 ~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 999999887644 77888999999999999999999999999998766543 5666666666666666666677
Q ss_pred HHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 017743 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294 (366)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 294 (366)
+..... .+.++..-.+++.-+..+|+.++|.++..+..+++..|+ -...-.+.+-++...-++..++..+.. +-
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 766544 255667778888889999999999999999999887765 222334566778887777777766543 23
Q ss_pred CHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcccccCCCCCcc
Q 017743 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAK 354 (366)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 354 (366)
++..+.+|-+.|.+.+.|.+|...|+...+ ..|+..+|..+-.++...|.........
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHH
Confidence 568899999999999999999999997777 5699999999999999888875444433
No 47
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.51 E-value=1.2e-09 Score=96.95 Aligned_cols=306 Identities=12% Similarity=0.064 Sum_probs=219.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (366)
....-.....+.-.|++++|.+++.+.+... +.....|-.|-..|- ..|+.++++..+-..... .+.|...|.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyE----qrGd~eK~l~~~llAAHL--~p~d~e~W~ 211 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYE----QRGDIEKALNFWLLAAHL--NPKDYELWK 211 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHH----HcccHHHHHHHHHHHHhc--CCCChHHHH
Confidence 3444444555566699999999999998763 235667888877776 444588988887776643 366778999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHH
Q 017743 91 ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF----NLLIDSY 166 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~ 166 (366)
.+.....+.|.++.|.-.|.+.++.. +++...+---...|-+.|+...|.+-|.++.+...+.|..-+ ..+++.+
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875 456666666778899999999999999999887432232222 3345666
Q ss_pred hccCChhHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC---------------------
Q 017743 167 GKRQAFDKMEQVFKSLMHS-KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP--------------------- 224 (366)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--------------------- 224 (366)
...++-+.|.+.++..... +-..+...++.++..+.+...++.+......+......+
T Consensus 291 ~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 291 ITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV 370 (895)
T ss_pred HHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence 7777778888888877652 233456677888888888888888888877766521122
Q ss_pred ------CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 017743 225 ------SFITYECIITMYGYCDNVSRAREIFDELSKLG--KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296 (366)
Q Consensus 225 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 296 (366)
+..++ .+.-++......+....+...+...+ +.-+...|.-+..++...|++.+|+.+|..+......-+.
T Consensus 371 ~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~ 449 (895)
T KOG2076|consen 371 GKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA 449 (895)
T ss_pred CCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence 22221 12223333343344444444455444 4446677888888999999999999999988876545567
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 297 STYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
..|..+.++|...|.+++|.+.|++.+..
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 78888889999999999999999988873
No 48
>PF13041 PPR_2: PPR repeat family
Probab=99.49 E-value=1e-13 Score=80.69 Aligned_cols=49 Identities=37% Similarity=0.540 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHh
Q 017743 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL 57 (366)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 57 (366)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 8999999999999999999999999999999999999999999999986
No 49
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=1e-11 Score=97.47 Aligned_cols=230 Identities=9% Similarity=-0.018 Sum_probs=196.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (366)
-+-+.++|.+.|.+.+|.+.++..++. .|-+.||..|-+.|.+..+++.|+.++.+-.+. ++-++.....+...+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 467889999999999999999998876 567789999999999999999999999998876 34455555667788888
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 248 (366)
.++.++|.++|+...+. .+.++.....+...|.-.++++-|...++++.+.| .-++..|..+.-+|...+++|-++..
T Consensus 303 m~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999999886 34577777788888889999999999999999999 45788899999999999999999999
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 249 FDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 249 ~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
|++....--.| -..+|-.+.......|++..|.+.|+-....+.. +...++.|.-.-.+.|++++|..+++....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 99887653323 3567888888888999999999999998887633 678899999889999999999999998776
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.48 E-value=8.7e-12 Score=109.78 Aligned_cols=268 Identities=15% Similarity=0.173 Sum_probs=142.5
Q ss_pred cccccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCC
Q 017743 4 QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK 83 (366)
Q Consensus 4 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 83 (366)
..|+.|+..||..+|.-||..|+.+.|- +|..|.-+....+...++.++.+....++ .+.+. .
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And----~Enpk------------e 80 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEAND----AENPK------------E 80 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccccc----ccCCC------------C
Confidence 3456666666666666666666666665 66666554444444555555544432222 22111 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHH
Q 017743 84 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS-NQCKPDIITFNLL 162 (366)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l 162 (366)
|...+|..|..+|...||+.. ++..++ -...+...+...|.-.....++..+.- .+.-||..+ .
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~ 145 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---A 145 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---H
Confidence 555566666666666666544 122211 111223333444444444444443221 122233322 2
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcH
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 242 (366)
+....-.|-++.+.+++..+-..... . .+..+++-+... .....++........-.|+..+|..++.+-...|+.
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~ 220 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDV 220 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCch
Confidence 23333445566666555444211000 0 111123332222 222333333222221147778888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhch
Q 017743 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311 (366)
Q Consensus 243 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 311 (366)
+.|..++.+|.+.|+..+.+-|-.|+-+ .++...++.++..|.+.|+.|+..|+...+..+..+|.
T Consensus 221 d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 221 DGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888888888888877777766666655 67777777778888888888888888777777777554
No 51
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.48 E-value=6.3e-10 Score=99.36 Aligned_cols=312 Identities=13% Similarity=0.071 Sum_probs=219.0
Q ss_pred ccccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCC
Q 017743 5 RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP 84 (366)
Q Consensus 5 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 84 (366)
+...||+.+- +-..+.+.|+.+.|+..|....+. .|+...-...+..+-........+..+..++...-... +.
T Consensus 195 p~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n--~~ 268 (1018)
T KOG2002|consen 195 PACKADVRIG--IGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN--NE 268 (1018)
T ss_pred cccCCCccch--hhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc--CC
Confidence 4445554332 235566777788888888777764 33222211222222112223455777777777776543 56
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILA--PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (366)
|+...+.|...|.-.|++..++.+...+...... .-...|..+.++|...|++++|..+|.+..+..-...+..+.-+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 7788999999999999999999999988875311 12355888999999999999999999998876322223445567
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----cHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR----LQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (366)
.+.+.+.|+.+.+...|+.+... .+.+..+...+...|...+ ..+.|..++.+..+.. +.|...|-.+...+..
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 88999999999999999999886 3446677777776666654 5567777777777654 5567788888877764
Q ss_pred cCcHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC---CCC------CCHHHHHHHHHH
Q 017743 239 CDNVSRAREIFDELS----KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVT------PDSSTYKLLYKA 305 (366)
Q Consensus 239 ~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~------p~~~~~~~l~~~ 305 (366)
++...++..|..+. ..+..+.+...|.+...+...|++++|...|...... ... ++..+-..+.+.
T Consensus 427 -~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 -TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred -cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 44444476666543 4555577899999999999999999999999987754 112 233344456667
Q ss_pred HHhhchHHHHHHHHHHHHhC
Q 017743 306 YTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 306 ~~~~~~~~~a~~~~~~m~~~ 325 (366)
.-..++++.|.+.|+.+.+.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHH
Confidence 77788999999999999875
No 52
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.47 E-value=1.5e-09 Score=96.25 Aligned_cols=329 Identities=11% Similarity=0.068 Sum_probs=240.9
Q ss_pred cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCH
Q 017743 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI 86 (366)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 86 (366)
+.+...|.+|...|-.+|+.+++...+-..-. ..| |...|..+-.... ..|.+.+|.-.|.+..+.. +++.
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~----~~~~i~qA~~cy~rAI~~~--p~n~ 241 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSE----QLGNINQARYCYSRAIQAN--PSNW 241 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHH----hcccHHHHHHHHHHHHhcC--Ccch
Confidence 34677899999999999999999877644433 344 5556666655554 5666999999999988643 6666
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH----HHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN----GVMDAYGKNGMIKEMESVLSRMKSN-QCKPDIITFNL 161 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ 161 (366)
..+---+..|-+.|+...|...|.++.....+.|..-+. ..++.+...++.+.|.+.++..... +-..+...++.
T Consensus 242 ~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni 321 (895)
T KOG2076|consen 242 ELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNI 321 (895)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHH
Confidence 666667788999999999999999999875433333333 3455666777779999988887663 22346677888
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCC---------------------------CCCHHHHHHHHHHHHhcCcHhHHHHHH
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHSKE---------------------------KPTLPTFNSMIINYGKARLQGKAEYVF 214 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~ 214 (366)
++..+.+...++.+......+..... .++..++ .+.-++...+..+....+.
T Consensus 322 ~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll 400 (895)
T KOG2076|consen 322 LAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALL 400 (895)
T ss_pred HHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHH
Confidence 99999999999999988887766211 2222221 2333455556666666677
Q ss_pred HHHHhCCCCC--CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 017743 215 QKMTAMKYTP--SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV 292 (366)
Q Consensus 215 ~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 292 (366)
..+.+..+.| +...|.-+..++...|++.+|..+|..+......-+...|-.+..+|...|.+++|.+.|+..+...
T Consensus 401 ~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~- 479 (895)
T KOG2076|consen 401 HFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA- 479 (895)
T ss_pred HHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 7777666444 4568899999999999999999999999987655578899999999999999999999999998864
Q ss_pred CCCHHHHHHHHHHHHhhchHHHHHHHHHHHH--------hCCCCCChhHHHHHHHHhhcccc
Q 017743 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRME--------QNGIVPNKRFFLEALETFSSSLA 346 (366)
Q Consensus 293 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~ll~~~~~~~~ 346 (366)
+.+...-..|...+.+.|+.++|.+++..+. ..+..|+.+........+...|.
T Consensus 480 p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 480 PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 3356666778888899999999999999854 23455555544444444444443
No 53
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.46 E-value=4.5e-10 Score=100.26 Aligned_cols=318 Identities=15% Similarity=0.150 Sum_probs=209.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHH----hcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCC--CCC
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMR----NSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME--RCK 83 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~ 83 (366)
|..+|-.+...+-. ++...++..|.... ..+..+.....|.+-..+. ..|.+++|...|......- ...
T Consensus 413 d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf----~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHF----RLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred cHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH----HhcChHHHHHHHHHHhhhhhhhcC
Confidence 45555555544433 33333355555432 3444456666666665555 3344677777666655420 011
Q ss_pred CCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 017743 84 PNI------VTYNILLRACAQARNVDQVNALFKELHESILAPDI-YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156 (366)
Q Consensus 84 ~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 156 (366)
++. .+--.+....-..++.+.|.+.|..+.+. .|+- ..|.-++......+...+|...+....+.. ..++
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np 564 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNP 564 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCc
Confidence 222 12223444455556777777777777765 2332 233333333334567777888887776653 3466
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHh------------cCcHhHHHHHHHHHHhCCCC
Q 017743 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSK-EKPTLPTFNSMIINYGK------------ARLQGKAEYVFQKMTAMKYT 223 (366)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~~~~~~a~~~~~~~~~~~~~ 223 (366)
..++.+...+.+...+..|.+-|..+...- ..+|..+.-+|...|.+ .+..++|+++|.+.++.. +
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-p 643 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-P 643 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-c
Confidence 667777778888888888888777665532 22465555555554442 245678999999888775 5
Q ss_pred CCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCCCHHHHHHH
Q 017743 224 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM-GVTPDSSTYKLL 302 (366)
Q Consensus 224 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l 302 (366)
.+...-+.+.-.++..|++.+|..+|....+.... ...+|-.+.++|...|++..|+++|+...+. ...-+..+...|
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 67778888888899999999999999999987543 5678999999999999999999999987654 445578899999
Q ss_pred HHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHH
Q 017743 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEA 337 (366)
Q Consensus 303 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 337 (366)
.+++.+.|++.+|.+.+.........-....|+..
T Consensus 723 ara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 723 ARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 99999999999999998888775433333444433
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=2e-11 Score=95.89 Aligned_cols=229 Identities=11% Similarity=0.021 Sum_probs=177.1
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH-HHHH
Q 017743 50 NALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY-NGVM 128 (366)
Q Consensus 50 ~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll 128 (366)
+.+-++|.+. |.+.+|.+.|+..... .|-+.||..|-+.|.+..++..|+.++.+-++. .|-.+|| .-+.
T Consensus 227 ~Q~gkCylrL----gm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 227 QQMGKCYLRL----GMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred HHHHHHHHHh----cChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 4555666643 4488888888776653 677888888888899889999998888887765 3444444 4566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHh
Q 017743 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208 (366)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 208 (366)
+.+-..++.++|.++++...+.. +.++.....+...|.-.++++.|+..|+++++.|+. +...|+.+.-+|.-.++++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 77778888899999998887763 346666667777788888899999999998888775 7778888888888888888
Q ss_pred HHHHHHHHHHhCCCCCC--HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 017743 209 KAEYVFQKMTAMKYTPS--FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286 (366)
Q Consensus 209 ~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (366)
-++..|.+....--.|+ ..+|-.+.......|++..|.+.|+-....+.. +...++.|.-.-.+.|++++|..+++.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 88888888776543344 356777888888889999999999888877655 678888888888889999999999888
Q ss_pred hhhC
Q 017743 287 SHNM 290 (366)
Q Consensus 287 ~~~~ 290 (366)
....
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 7664
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.44 E-value=3.4e-13 Score=78.44 Aligned_cols=49 Identities=35% Similarity=0.569 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 017743 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307 (366)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 307 (366)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555543
No 56
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.44 E-value=5.2e-09 Score=89.96 Aligned_cols=320 Identities=10% Similarity=0.029 Sum_probs=236.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (366)
.+|+.-.+.|.+.+.++-|..+|...++- .| +...|......=- ..|..+....+|++... .++.....|.
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek----~hgt~Esl~Allqkav~--~~pkae~lwl 588 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEK----SHGTRESLEALLQKAVE--QCPKAEILWL 588 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHH----hcCcHHHHHHHHHHHHH--hCCcchhHHH
Confidence 45666777788888888888888887764 33 3444544433221 33456777778888774 3455666677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 017743 91 ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 170 (366)
.....+-..|++..|..++....+... -+...|..-+..-.....++.|..+|.+.... .|+..+|.--+....-.+
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhh
Confidence 777788888999999999998888753 36778888888888999999999999988765 567777777777777788
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH
Q 017743 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250 (366)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 250 (366)
..++|.+++++.++. .+.-...|..+.+.+-+.++.+.|...|..-.+.. +-....|-.|...=-+.|.+-.|..+++
T Consensus 666 ~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 666 NVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred hHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 899999999888875 34445677778888888888888888877666542 3445677777777778888999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC----C-------------------------CCCCHHHHHH
Q 017743 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM----G-------------------------VTPDSSTYKL 301 (366)
Q Consensus 251 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~-------------------------~~p~~~~~~~ 301 (366)
...-++++ +...|...|+.-.+.|+.+.|..+..+..+. | ...|+.+...
T Consensus 744 rarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVlla 822 (913)
T KOG0495|consen 744 RARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLA 822 (913)
T ss_pred HHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHH
Confidence 98888776 7888999999999999999887766554322 1 2335566666
Q ss_pred HHHHHHhhchHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccccc
Q 017743 302 LYKAYTKANMKELVQKLLKRMEQNGIVPN-KRFFLEALETFSSSLAG 347 (366)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~ 347 (366)
+...|-...+++.|+++|.+.++.+ || ..+|..+.+-....|..
T Consensus 823 ia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 823 IAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccC--CccchHHHHHHHHHHHhCCH
Confidence 7777788888999999999998754 43 45666677766666654
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.44 E-value=2e-11 Score=107.53 Aligned_cols=273 Identities=15% Similarity=0.158 Sum_probs=196.4
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017743 32 WLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE 111 (366)
Q Consensus 32 ~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 111 (366)
..+-.+...|+.|+..||..+|.-||..|+ .+.|- +|.-|.- ...+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gd----ieaat-if~fm~~-ksLpv~e~vf~~lv~sh~~And~Enpk----- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGD----IEAAT-IFPFMEI-KSLPVREGVFRGLVASHKEANDAENPK----- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCC----Ccccc-chhhhhc-ccccccchhHHHHHhcccccccccCCC-----
Confidence 345667888999999999999999996665 77776 7877765 556778889999999999999887765
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhc-CCCCC
Q 017743 112 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS-KEKPT 190 (366)
Q Consensus 112 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 190 (366)
.|...||..|..+|...|++.. |+...+ ....+...+...|--.....++..+.-. +.-||
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd 141 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPD 141 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchh
Confidence 6889999999999999999876 222222 2233444556666666555555554221 23344
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017743 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKY-TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269 (366)
Q Consensus 191 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 269 (366)
... .+....-.|.++.+.+++..+..... .|..+ +++-+..... -..++........-.|+..+|.+++.
T Consensus 142 a~n---~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~ 212 (1088)
T KOG4318|consen 142 AEN---AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLK 212 (1088)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHH
Confidence 433 33344556777777777766543321 12211 2444443332 23333333333222579999999999
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccc
Q 017743 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 345 (366)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 345 (366)
+-..+|+.+.|..++.+|.+.|++.+..-|..|+-+ .+....+..+++.|.+.|+.|+..|+...+..+.+.+
T Consensus 213 ~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 213 RALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 999999999999999999999999999888888866 7888889999999999999999999998888777743
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=7.3e-10 Score=93.36 Aligned_cols=274 Identities=12% Similarity=0.045 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 141 (366)
....+.+..++++.+.+.. ++...++..-|.++...|+..+-..+-.++.+. .|-...+|.++..-|...|+.++|.
T Consensus 256 ~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHH
Confidence 4455888888888887644 666667777777888888888887777787776 3557788999998888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
+.|.+....... =...|-.....|.-.|..++|...+...-+. .+-...-+--+.--|.+.+..+.|.++|.+.....
T Consensus 333 ry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 333 RYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred HHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 999988765322 3567888889999999999999888877654 11122222334455778899999999999888764
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC----CCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC
Q 017743 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKL----GKD--MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295 (366)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 295 (366)
+.|+...+-+.-.....+.+.+|...|+..... +.+ .-..+++.|.++|.+.+.+++|+..+++.+.... -|
T Consensus 411 -P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~-k~ 488 (611)
T KOG1173|consen 411 -PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP-KD 488 (611)
T ss_pred -CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC-Cc
Confidence 566778888887777889999999999887632 111 1345688899999999999999999999888753 48
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 017743 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344 (366)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 344 (366)
..++..+.-.|...|+++.|.+.|.+..- +.|+..+...++..+...
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIED 535 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHHh
Confidence 89999999999999999999999998876 778888888877766544
No 59
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.41 E-value=5.8e-09 Score=91.04 Aligned_cols=292 Identities=16% Similarity=0.114 Sum_probs=203.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCChhhH-HHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 017743 17 LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVY-NALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95 (366)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~-~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (366)
....+...|++++|++.++.-... -+|...+ ...-..+. +.|+.++|..++..+.+.. +.|...|..+..+
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~----kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLL----KLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHH
Confidence 445678899999999999875543 4555544 44444555 4555999999999998642 4455555566655
Q ss_pred HHhc-----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 017743 96 CAQA-----RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMI-KEMESVLSRMKSNQCKPDIITFNLLIDSYGKR 169 (366)
Q Consensus 96 ~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (366)
.... .+.+...++|+++...- |.......+.-.+.....+ ..+..++..+...|++ .+|+.+-..|...
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~ 156 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDP 156 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcCh
Confidence 5222 35778888898887652 4444333332222222233 3455667777778765 3566666667766
Q ss_pred CChhHHHHHHHHHHhc----C----------CCCCHH--HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC-HHHHHHH
Q 017743 170 QAFDKMEQVFKSLMHS----K----------EKPTLP--TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS-FITYECI 232 (366)
Q Consensus 170 ~~~~~a~~~~~~~~~~----~----------~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l 232 (366)
...+-..+++...... + .+|+.. ++..+...|...|++++|.+.+++.+++ .|+ ...|..-
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~K 234 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTK 234 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence 6666666666665432 1 123432 4466678888999999999999999987 455 6788899
Q ss_pred HHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH------HH--HHHHH
Q 017743 233 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS------TY--KLLYK 304 (366)
Q Consensus 233 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~--~~l~~ 304 (366)
.+.+-..|++.+|.+.++.....+.. |...-+-.+..+.+.|+.++|.+++....+.+..|-.. .| .-...
T Consensus 235 arilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~ 313 (517)
T PF12569_consen 235 ARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAE 313 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998766 78888888999999999999999999988776544321 22 34556
Q ss_pred HHHhhchHHHHHHHHHHHHh
Q 017743 305 AYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 305 ~~~~~~~~~~a~~~~~~m~~ 324 (366)
+|.+.|++..|++.|..+.+
T Consensus 314 a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 314 AYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 78899998888877665543
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=4.1e-09 Score=87.49 Aligned_cols=196 Identities=10% Similarity=0.064 Sum_probs=139.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 017743 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203 (366)
Q Consensus 124 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 203 (366)
|-.+...|....+.++..+.|+.....+.. |..+|..-.+.+.-.+++++|..=|++.+... +-+...|-.+.-+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHH
Confidence 555556677777777777777777766433 56667666677777777888888888776632 1234455555555567
Q ss_pred cCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC-------CCHHHHHHHHHHHHhcCC
Q 017743 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD-------MKVSTLNAMLEAYCMNGL 276 (366)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~li~~~~~~g~ 276 (366)
.+.++++...|++.++. ++.-+..|+.....+...++++.|.+.|+...+.... +.+.+-.+++..- -.++
T Consensus 441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d 518 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhh
Confidence 78888888888888876 3445778888888999999999999999887764322 1122222233222 3378
Q ss_pred hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 277 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
+..|..++++..+.+.+ ....|..|...-.+.|+.++|+++|++-..
T Consensus 519 ~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88999999998887644 567788999999999999999999998765
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.8e-09 Score=89.17 Aligned_cols=290 Identities=10% Similarity=-0.021 Sum_probs=219.9
Q ss_pred cccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC
Q 017743 6 WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85 (366)
Q Consensus 6 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 85 (366)
+..-++.....-.+-+...+++.+..++++.+.+.. ++....+..-|..+...++...-+.-+-++.+. .|..
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~------yP~~ 311 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL------YPSK 311 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh------CCCC
Confidence 445566677777888889999999999999998753 445666666676666555544444444444433 3557
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 017743 86 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165 (366)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (366)
+.+|-++.-.|...|+..+|.+.|.+....... =...|..+...|.-.|..++|...+....+.= +-..--+--+.--
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgme 389 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGME 389 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHH
Confidence 789999999999999999999999987754311 34578888999999999999999988776541 1111112223445
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC----C--CCCCHHHHHHHHHHhhcc
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM----K--YTPSFITYECIITMYGYC 239 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~ 239 (366)
|.+.++.+.|.+.|.+.... .+.|+...+-+.-.....+.+.+|..+|+..... + ...-..+++.|..+|.+.
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 78899999999999998875 3446777777777777789999999999887632 1 112345789999999999
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 017743 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308 (366)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 308 (366)
+.+++|+..++.......+ +..++.++.-.|...|+++.|.+.|++... +.|+-.+-..++..+..
T Consensus 469 ~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred hhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 9999999999999988655 899999999999999999999999998876 57888777777765443
No 62
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.37 E-value=1.5e-08 Score=87.20 Aligned_cols=305 Identities=10% Similarity=0.049 Sum_probs=171.9
Q ss_pred cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHH
Q 017743 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 87 (366)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 87 (366)
+-+...|...+..=-..|..+....+|++.... -|....+-. .+++..-..|++..|..++....+.. +.+..
T Consensus 547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwl---M~ake~w~agdv~~ar~il~~af~~~--pnsee 619 (913)
T KOG0495|consen 547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWL---MYAKEKWKAGDVPAARVILDQAFEAN--PNSEE 619 (913)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHH---HHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHH
Confidence 334445555555555555666666666655543 222222111 11222223344555555555554321 33445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 017743 88 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (366)
.|...+..-..+..++.|..+|.+.... .|+...|..-+..---.+..++|.+++++..+. ++.-.-.|-.+.+.+-
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHH
Confidence 5555555555556666666666555443 345555554444444455556666666555544 2222334444455555
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHH
Q 017743 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247 (366)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 247 (366)
+.++.+.|.+.|..-.+. .+.....|..+...--+.|..-.|..++++..-.+ +-+...|-..|++-.+.|+.+.|..
T Consensus 697 ~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHH
Confidence 555555555555444332 33344445544444445555555555555554443 3344555555555555555555544
Q ss_pred HHHHHHhC----C-------------------------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHH
Q 017743 248 IFDELSKL----G-------------------------KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298 (366)
Q Consensus 248 ~~~~~~~~----~-------------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 298 (366)
++....+. | ..-|+++...+...|....++++|.+.|.+..+.+ +.+..+
T Consensus 775 lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~ 853 (913)
T KOG0495|consen 775 LMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDA 853 (913)
T ss_pred HHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchH
Confidence 44333221 0 23367777888888889999999999999999876 336789
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 299 YKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
|..+...+.++|.-++-.+++......
T Consensus 854 wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 854 WAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 999999999999988888898887763
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.35 E-value=1.9e-09 Score=93.03 Aligned_cols=238 Identities=18% Similarity=0.141 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-
Q 017743 86 IVTYNILLRACAQARNVDQVNALFKELHES-----I-LAPDIYT-YNGVMDAYGKNGMIKEMESVLSRMKSN-----QC- 152 (366)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~- 152 (366)
..+...+...|...|+++.|..+++...+. | ..|...+ .+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456677999999999999999999988765 2 1233333 344677888999999999999998642 21
Q ss_pred -CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhc-----CC-CCCH-HHHHHHHHHHHhcCcHhHHHHHHHHHHhC---C
Q 017743 153 -KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS-----KE-KPTL-PTFNSMIINYGKARLQGKAEYVFQKMTAM---K 221 (366)
Q Consensus 153 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~ 221 (366)
+.-..+++.|..+|.+.|++++|...+++..+- +. .|.+ ..++.+...|...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 122456777888999999999999888876542 11 2222 24566777788899999999999876542 1
Q ss_pred CCCC----HHHHHHHHHHhhccCcHHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh--
Q 017743 222 YTPS----FITYECIITMYGYCDNVSRAREIFDELSKLG-------KDMKVSTLNAMLEAYCMNGLPTEADLLFENSH-- 288 (366)
Q Consensus 222 ~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-- 288 (366)
..++ ..+++.|...|...|++++|.++++.+.... ..-....++.|...|.+.+.+.+|.++|.+..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1222 4578999999999999999999999876531 11224567889999999999999999888754
Q ss_pred --hCCC-CC-CHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 289 --NMGV-TP-DSSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 289 --~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
..|+ .| ...+|..|...|...|+++.|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2332 12 35789999999999999999999988775
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.32 E-value=9.8e-09 Score=84.69 Aligned_cols=219 Identities=9% Similarity=-0.043 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 017743 64 KALAKALGYFQKMKGMERCKPN--IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141 (366)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 141 (366)
...+.++..+.++.......|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3456666666666542222232 3456777777888888888888888887764 335677888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
..|+...+... .+..++..+..++...|++++|.+.|+...+.. |+..........+...+++++|...+.+.....
T Consensus 119 ~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 88888877532 245667777777788888888888888887743 322211112222344567888888886654332
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC---CCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 017743 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKL---GKD---MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291 (366)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (366)
.|+...+ .+... ..|+...+ ..+..+.+. .+. .....|..+...+.+.|++++|...|++..+.+
T Consensus 196 -~~~~~~~-~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQWGW-NIVEF--YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CccccHH-HHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222221 22222 23444333 233333321 111 123467777777778888888888888777654
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.28 E-value=1.9e-08 Score=75.61 Aligned_cols=193 Identities=12% Similarity=0.045 Sum_probs=93.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc
Q 017743 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206 (366)
Q Consensus 127 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 206 (366)
|.-.|.+.|+...|..-+++..+.. +.+..+|..+...|.+.|+.+.|.+-|++.+... +-+..+.|.....+|..|.
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence 3344445555555555555555442 1134444445555555555555555555554431 1233444444444555555
Q ss_pred HhHHHHHHHHHHhCCCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 017743 207 QGKAEYVFQKMTAMKYTP-SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285 (366)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 285 (366)
+++|...|++......-+ -..+|..+.-+..+.|+.+.|...|++..+.... .......+.......|++-.|...++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHH
Confidence 555555555544432111 1234555555555555555555555555554433 33444445555555555555555555
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 286 NSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 286 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
.....+. ++..+....|+.-...|+.+.+-++=..+.
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5544442 455555555555555555555554444433
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.28 E-value=1.9e-09 Score=80.80 Aligned_cols=201 Identities=11% Similarity=0.015 Sum_probs=169.6
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (366)
+...+.-.|...|++..|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..... +-+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34556778999999999999999999863 3367789999999999999999999999999875 455778899999999
Q ss_pred ccCcHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHH
Q 017743 238 YCDNVSRAREIFDELSKLGK-DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 316 (366)
..|++++|...|+....... .--..+|..+.-+..+.|+++.|...|++..+.... ...+...+.+...+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 99999999999999887522 223578899999999999999999999999987633 5677888999999999999999
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHhhcccccCCCCCccchhhhhhh
Q 017743 317 KLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRSLS 362 (366)
Q Consensus 317 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~r~~~ 362 (366)
.+++.....+. ++.......|+.-...|+..........+.|.+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 99999988766 8999999999988888888777776666666553
No 67
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=5.7e-09 Score=86.67 Aligned_cols=195 Identities=11% Similarity=0.070 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (366)
|--+...|....+.++.++.|+...+.+ +-|..+|..-...+.-.+++++|..=|++..... +.+...|-.+.-+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHH
Confidence 4444444555555555555555554443 2244444444444444455555555555544432 1133333344444444
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCC-------CCHHHHHHHHHHhhccCc
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT-------PSFITYECIITMYGYCDN 241 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~ 241 (366)
.++++++...|++.... .+..+..|+.....+...++++.|.+.|+..++.... +.+.+--.++..- =.++
T Consensus 441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d 518 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhh
Confidence 45555555555555443 3334445555555555555555555555544433100 1111111111111 1255
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 017743 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (366)
+..|..++....+.+++ ....|..|...-.+.|+.++|+++|++..
T Consensus 519 ~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55566666555555444 34455555555556666666666665543
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.27 E-value=1.7e-08 Score=83.35 Aligned_cols=231 Identities=14% Similarity=-0.019 Sum_probs=161.9
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHH
Q 017743 99 ARNVDQVNALFKELHESI-LAPD--IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 175 (366)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 175 (366)
.+..+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|++..+... .+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 346677777777777542 1222 35577888889999999999999999988753 3688999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
...|++..+..+ .+..++..+...+...|++++|.+.++...+.. |+..........+...++.++|...|......
T Consensus 118 ~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 999999988532 256778888888999999999999999998864 43221222222334567899999999776543
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC---CC--C-CCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCC
Q 017743 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GV--T-PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329 (366)
Q Consensus 256 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~--~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~ 329 (366)
. .++. |. ........|+...+ ..+..+.+. .+ . .....|..+...+...|++++|...|++..+.+. |
T Consensus 195 ~-~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~ 268 (296)
T PRK11189 195 L-DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-Y 268 (296)
T ss_pred C-Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-c
Confidence 2 2222 22 12233345666554 344444321 11 1 1346799999999999999999999999998653 3
Q ss_pred ChhHHHHHHH
Q 017743 330 NKRFFLEALE 339 (366)
Q Consensus 330 ~~~~~~~ll~ 339 (366)
|..-+...+-
T Consensus 269 ~~~e~~~~~~ 278 (296)
T PRK11189 269 NFVEHRYALL 278 (296)
T ss_pred hHHHHHHHHH
Confidence 5544444333
No 69
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=4e-07 Score=75.80 Aligned_cols=307 Identities=11% Similarity=0.088 Sum_probs=201.3
Q ss_pred ccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCC-CCC
Q 017743 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC-KPN 85 (366)
Q Consensus 7 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 85 (366)
..|+..+|++.|+.=.+...++.|..+|+..+-. .|+..+|-.....=. +.|.+..+..+|....+.-|- ..+
T Consensus 170 w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~----k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 170 WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEE----KHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHH----hcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 4788899999999888889999999999888754 577777655443322 223344444444433321110 011
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH--------------------------------------------HHHcCCCCCh
Q 017743 86 IVTYNILLRACAQARNVDQVNALFKE--------------------------------------------LHESILAPDI 121 (366)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~--------------------------------------------~~~~~~~~~~ 121 (366)
...|.+....=.++..++.|.-+|+- +++.+ +.|-
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nY 322 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCc
Confidence 22223332222223333333333322 22222 3456
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH--------HHhccCChhHHHHHHHHHHhcCCCCCH
Q 017743 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI--ITFNLLID--------SYGKRQAFDKMEQVFKSLMHSKEKPTL 191 (366)
Q Consensus 122 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~--------~~~~~~~~~~a~~~~~~~~~~~~~~~~ 191 (366)
.+|-..++.-...|+.+...++|+..... ++|-. ..|...|- .-....+.+.+.++|+..++. ++...
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkk 400 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKK 400 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCccc
Confidence 66777777777778888888888888765 33321 12222221 123467888888888888774 44455
Q ss_pred HHHHHHHHHH----HhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 017743 192 PTFNSMIINY----GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267 (366)
Q Consensus 192 ~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 267 (366)
.||..+--.| .++.+...|.+++-..+.. .|-..++...|..-.+.++++.+..+++...+.++. +-.+|...
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~ky 477 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKY 477 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHH
Confidence 5555443333 4567888888888776644 677888888888888899999999999999998766 77888888
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 268 LEAYCMNGLPTEADLLFENSHNMG-VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
...-...|+.+.|..+|+-.++.. +......|...|+.-...|.++.|..+|+++++.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 888888999999999999888742 1122455667777777899999999999999875
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.26 E-value=6.8e-08 Score=84.49 Aligned_cols=259 Identities=14% Similarity=0.186 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH-HHHHHHHh-----cC
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN-GVMDAYGK-----NG 135 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~-----~~ 135 (366)
..|.+++|++.+..-.. .+.............+.+.|+.++|..+|..+++.+ |+...|. .+..+..- ..
T Consensus 16 e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccc
Confidence 45669999999988663 344455667788999999999999999999999985 5555554 44444422 23
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh-hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHH
Q 017743 136 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF-DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 214 (366)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 214 (366)
+.+....+++++...- |.......+.-.+.....+ ..+...+..+...|++ .+|+.+-..|.......-..+++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence 5788889999887763 3433333333223332333 3445566677777765 34555555565555555555555
Q ss_pred HHHHhC----C----------CCCCHH--HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 017743 215 QKMTAM----K----------YTPSFI--TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278 (366)
Q Consensus 215 ~~~~~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 278 (366)
...... + -+|+.. ++..+.+.|...|++++|+..++..+++.+. .+..|..-...+-+.|++.
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHH
Confidence 554322 1 134443 4466678888999999999999999998655 5888999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCCh
Q 017743 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331 (366)
Q Consensus 279 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 331 (366)
+|.+.++.....+.. |...-+..+..+.+.|+.++|.+++....+.+..|..
T Consensus 246 ~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~ 297 (517)
T PF12569_consen 246 EAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS 297 (517)
T ss_pred HHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence 999999999998755 8888888899999999999999999999887765444
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.23 E-value=1.1e-08 Score=88.40 Aligned_cols=198 Identities=16% Similarity=0.136 Sum_probs=116.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----C--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-
Q 017743 91 ILLRACAQARNVDQVNALFKELHES-----I--LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN-----QC-KPDI- 156 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~- 156 (366)
.+...|...+++++|..+|+++... | .+--..+++.|..+|.+.|++++|...++...+. |. .|.+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 4555666666666666666666542 1 1112344555566666667666666555544221 11 1222
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhc---CCCC----CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC-----C--C
Q 017743 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHS---KEKP----TLPTFNSMIINYGKARLQGKAEYVFQKMTAM-----K--Y 222 (366)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~--~ 222 (366)
..++.+...+...+++++|..++....+. -+.+ -..+++.+...|...|++++|.++++..+.. + .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 23345555666677777777776654332 1111 2356777777788888888888777776543 1 1
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHh----CCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 017743 223 TPSFITYECIITMYGYCDNVSRAREIFDELSK----LGK--DMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288 (366)
Q Consensus 223 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (366)
.-....++.+...|.+.++..+|.++|.+... .|+ +-...+|..|...|...|+++.|.++.+...
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11234667777777777777777777766432 222 1134567778888888888888887776654
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.18 E-value=3.7e-07 Score=78.10 Aligned_cols=306 Identities=11% Similarity=0.001 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGC-RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~-~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (366)
...|..+...+...|+.+.+...+........ .++...... +.+... ...+++++|.+.+++..+.. +.+...+
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~a~~~--~~~g~~~~A~~~~~~~l~~~--P~~~~a~ 80 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAH-VEALSA--WIAGDLPKALALLEQLLDDY--PRDLLAL 80 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHH-HHHHHH--HHcCCHHHHHHHHHHHHHHC--CCcHHHH
Confidence 44566677777788889888777777654321 222222221 222111 14456889999999877532 4444454
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017743 90 NILLRACAQ----ARNVDQVNALFKELHESILAPD-IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164 (366)
Q Consensus 90 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (366)
.. ...+.. .+..+.+.+.+... ....|+ ......+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 42 222222 44555555555441 112233 3344455678889999999999999999875 335677888899
Q ss_pred HHhccCChhHHHHHHHHHHhcCCC-CCH--HHHHHHHHHHHhcCcHhHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHhh
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSKEK-PTL--PTFNSMIINYGKARLQGKAEYVFQKMTAMKY-TPSFITY-E--CIITMYG 237 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~ 237 (366)
.+...|++++|...+++....... ++. ..|..+...+...|++++|..++++...... .+..... + .++.-+.
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLE 236 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHH
Confidence 999999999999999998775322 232 3455678889999999999999999864432 1222111 1 2233333
Q ss_pred ccCcHHHHHHH--H-HHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC------C--CHHHHHHHHHH
Q 017743 238 YCDNVSRAREI--F-DELSKLGK-DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT------P--DSSTYKLLYKA 305 (366)
Q Consensus 238 ~~~~~~~a~~~--~-~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------p--~~~~~~~l~~~ 305 (366)
..|..+.+.+. + ........ ............++...|+.++|..++..+...... . .........-+
T Consensus 237 ~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~ 316 (355)
T cd05804 237 LAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALY 316 (355)
T ss_pred hcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHH
Confidence 34433222222 1 11111101 111222235667778899999999999988653211 0 11222223334
Q ss_pred HHhhchHHHHHHHHHHHHhC
Q 017743 306 YTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 306 ~~~~~~~~~a~~~~~~m~~~ 325 (366)
+...|++++|.+.+......
T Consensus 317 ~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 317 AFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 56889999999998887754
No 73
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.16 E-value=1.1e-08 Score=83.29 Aligned_cols=223 Identities=15% Similarity=0.099 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK-PDIITFNLLIDS 165 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 165 (366)
.....+.+++...|+.+.+. .++.... .|.......+...+...++-+.+..-+++....... .+..........
T Consensus 36 e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i 111 (290)
T PF04733_consen 36 ERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATI 111 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 34445556666666655432 2332222 445444444444443333444444444433322222 122222233344
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhh----ccCc
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG----YCDN 241 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~ 241 (366)
+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.+ .| .+...+..++. ..+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence 55667777776665432 345555666666777777777777777776542 22 22233333322 2235
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchH-HHHHHHHH
Q 017743 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK-ELVQKLLK 320 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~ 320 (366)
+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+.. ++.+...++-.....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 66777777776554 3456666677777777777777777777776655432 556666666666666666 55556666
Q ss_pred HHHh
Q 017743 321 RMEQ 324 (366)
Q Consensus 321 ~m~~ 324 (366)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 6655
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.1e-07 Score=76.05 Aligned_cols=310 Identities=11% Similarity=0.019 Sum_probs=205.2
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHh
Q 017743 21 MGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN-IVTYNILLRACAQ 98 (366)
Q Consensus 21 ~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 98 (366)
.+-.++...|..++-.+.....-| +......+-..+. ..|+..+|+..|++.... .|. ........-.+.+
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~----~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~Ya~LL~~ 278 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLY----YNGDYFQAEDIFSSTLCA---NPDNVEAMDLYAVLLGQ 278 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhh----hhcCchHHHHHHHHHhhC---ChhhhhhHHHHHHHHHh
Confidence 334455555665555554433334 4445566666666 445588888888887642 232 2223333344567
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHH
Q 017743 99 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178 (366)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 178 (366)
.|+.+....+...+.... ..+...|..-...+....+++.|+.+-++..+... .+...+-.-...+...|+.++|.-.
T Consensus 279 eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~Ia 356 (564)
T KOG1174|consen 279 EGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIA 356 (564)
T ss_pred ccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHH
Confidence 788888888777776542 23444455555556667888888888888876642 2455555556677888999999988
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHH-HHhh-ccCcHHHHHHHHHHHHhCC
Q 017743 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII-TMYG-YCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~ 256 (366)
|+..... -+.+..+|.-++.+|...|.+.+|.-.-....+. ++.+..+.+.+. ..+. ...--++|.++++...+.+
T Consensus 357 FR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~ 434 (564)
T KOG1174|consen 357 FRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN 434 (564)
T ss_pred HHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC
Confidence 8888764 2347788999999999999999888777665543 134455555552 2222 2233477888888877764
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHH
Q 017743 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 336 (366)
Q Consensus 257 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 336 (366)
+. -....+.+...+...|..+.++.++++... ..||....+.|.+.+...+.+.+|++.|..... +.|...--..
T Consensus 435 P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~sl~ 509 (564)
T KOG1174|consen 435 PI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSKRTLR 509 (564)
T ss_pred Cc-cHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccchHHHH
Confidence 43 345667788888889999999999988776 368888899999999999999999999888877 4455544333
Q ss_pred HHHHhhcccc
Q 017743 337 ALETFSSSLA 346 (366)
Q Consensus 337 ll~~~~~~~~ 346 (366)
=++-+-++-.
T Consensus 510 Gl~~lEK~~~ 519 (564)
T KOG1174|consen 510 GLRLLEKSDD 519 (564)
T ss_pred HHHHHHhccC
Confidence 3444444433
No 75
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.12 E-value=2e-06 Score=74.35 Aligned_cols=305 Identities=10% Similarity=0.106 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchH------------------HHHHHHHHHHHH
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD------------------KAKALAKALGYF 73 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~------------------~~~~~~~a~~~~ 73 (366)
..|++|.+.|.+.|.+++|.++|++.... .....-+..+...|+.-.. ...+++-.+..|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 46899999999999999999999998765 3455666777776652211 001122223333
Q ss_pred HHHhcCCC----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------hhhHHHHHHHHHhcCCH
Q 017743 74 QKMKGMER----------CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD------IYTYNGVMDAYGKNGMI 137 (366)
Q Consensus 74 ~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~ 137 (366)
+.+..... -+.++..|..-... ..|+..+....|.++.+. +.|. ...|..+.+.|-..|++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 33332111 12233333333322 346677777888887764 2222 23477888889999999
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChhHHHHHHHHHHhcCC-----------C------CCHHHHHHH
Q 017743 138 KEMESVLSRMKSNQCKPD---IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-----------K------PTLPTFNSM 197 (366)
Q Consensus 138 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~------~~~~~~~~l 197 (366)
+.|..+|++..+...+-- ..+|.....+-.++.+++.|+++.+.....-- + -+...|...
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 999999999987654322 45666677777888999999999887654211 1 123456666
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh---
Q 017743 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK-VSTLNAMLEAYCM--- 273 (366)
Q Consensus 198 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~--- 273 (366)
+..--..|-++....+++++.+..+. ++...-.....+....-++++.+++++-...=.-|+ ...|+..+.-+.+
T Consensus 484 ~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 66666778899999999999987643 333333333334456668899999987666533333 4567777776665
Q ss_pred cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHH--HHhhchHHHHHHHHHHHH
Q 017743 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKA--YTKANMKELVQKLLKRME 323 (366)
Q Consensus 274 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~ 323 (366)
...++.|..+|++..+ |++|...-+-.|+-+ =-+.|....|+.++++..
T Consensus 563 g~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3478999999999998 666654332222222 234577777777777643
No 76
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.09 E-value=2.3e-08 Score=81.40 Aligned_cols=252 Identities=11% Similarity=0.058 Sum_probs=162.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 017743 18 IAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACA 97 (366)
Q Consensus 18 i~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 97 (366)
++.+.-.|++..++.-.+ ........+......+.+++...| +.+. .+.++.+. -.|.......+...+.
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg----~~~~---vl~ei~~~--~~~~l~av~~la~y~~ 77 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALG----QYDS---VLSEIKKS--SSPELQAVRLLAEYLS 77 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-----HHH---HHHHS-TT--SSCCCHHHHHHHHHHC
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcC----ChhH---HHHHhccC--CChhHHHHHHHHHHHh
Confidence 344556788888886665 222211112333444555555333 2433 34455432 2666666666665555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHH
Q 017743 98 QARNVDQVNALFKELHESILAP-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176 (366)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 176 (366)
..++-+.+..-+++.......+ +..........+...|++++|++++... .+.......+..|.+.++++.|.
T Consensus 78 ~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~ 151 (290)
T PF04733_consen 78 SPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAE 151 (290)
T ss_dssp TSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHH
Confidence 4455556655555444333222 2222233335566789999999988753 36777788899999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHH----hcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 017743 177 QVFKSLMHSKEKPTLPTFNSMIINYG----KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252 (366)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 252 (366)
+.++.|.+. ..|.. ...+..++. ..+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+.
T Consensus 152 k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 152 KELKNMQQI--DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp HHHHHHHCC--SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhc--CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999874 34433 333444443 234689999999998765 4678899999999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHhhhC
Q 017743 253 SKLGKDMKVSTLNAMLEAYCMNGLP-TEADLLFENSHNM 290 (366)
Q Consensus 253 ~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~ 290 (366)
...+.. ++.+...++.+....|+. +.+.+++.++...
T Consensus 228 l~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 228 LEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 877655 778888888888888888 6678899888874
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=3.2e-06 Score=69.39 Aligned_cols=272 Identities=8% Similarity=-0.018 Sum_probs=174.5
Q ss_pred cccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC
Q 017743 6 WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85 (366)
Q Consensus 6 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 85 (366)
.++.|......+.+.+...|+.++|+..|++.... .|+..+-.- .|+......|..++...+...+.... +.+
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD---~Ya~LL~~eg~~e~~~~L~~~Lf~~~--~~t 299 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMD---LYAVLLGQEGGCEQDSALMDYLFAKV--KYT 299 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHH---HHHHHHHhccCHhhHHHHHHHHHhhh--hcc
Confidence 34556777778888888888888888888877653 343332111 11111123444555555555554311 234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 017743 86 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165 (366)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (366)
...|-.-+......+++..|..+-++.++.. +-+...+-.-...+...++.++|.--|+...... +-+...|..++.+
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHS 377 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHH
Confidence 4445555555556777888888877777653 2234444444566777888888888887776542 3467788888888
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHH-HHHH-hcCcHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCcH
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI-INYG-KARLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYCDNV 242 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 242 (366)
|...|++.+|.-+-+..... .+.+..+.+.+. ..|. ....-++|..+++..... .|+ ....+.+...+...|..
T Consensus 378 YLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~ 454 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPT 454 (564)
T ss_pred HHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCcc
Confidence 88888888887776665554 344555555442 2222 233456777777776654 344 45667777777788888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 017743 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291 (366)
Q Consensus 243 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (366)
..+..+++..... .||....+.|.+.+...+.+++|++.|......+
T Consensus 455 ~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 455 KDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred chHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 8888888877664 4577778888888888888888888888777654
No 78
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=4e-06 Score=70.04 Aligned_cols=312 Identities=11% Similarity=0.080 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCH-HHHH
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI-VTYN 90 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 90 (366)
..|-...+.=...+++..|..+|+..+.-. ..+...|...+..=. ++..+..|..+++..... -|.+ ..|-
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Em----knk~vNhARNv~dRAvt~---lPRVdqlWy 145 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEM----KNKQVNHARNVWDRAVTI---LPRVDQLWY 145 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHH----hhhhHhHHHHHHHHHHHh---cchHHHHHH
Confidence 334444444455677888999999988643 223334444444333 666688888888887642 3333 3455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 017743 91 ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 170 (366)
..+..=-..|++..|.++|++..+. .|+..+|.+.++.=.+-+.++.|..+++...-. .|++.+|-.....-.++|
T Consensus 146 KY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 146 KYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHG 221 (677)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcC
Confidence 5555556678999999999988875 789999999999988999999999999988764 588888888888888899
Q ss_pred ChhHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHhhccCcHHHHH
Q 017743 171 AFDKMEQVFKSLMHSKEK--PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS--FITYECIITMYGYCDNVSRAR 246 (366)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~ 246 (366)
....|..+|....+.-.. .+...+.+....-.++..++.|.-+|+-.++.- +.+ ...|..+...--+-|+.....
T Consensus 222 ~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 222 NVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhH
Confidence 999999998887764111 122344444444445667778888887776652 222 334444443333344433322
Q ss_pred HH--------HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH-------HHHHHHHHH---Hh
Q 017743 247 EI--------FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS-------TYKLLYKAY---TK 308 (366)
Q Consensus 247 ~~--------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-------~~~~l~~~~---~~ 308 (366)
.. ++.+.+.++ .|..+|-..+..-...|+.+...++|++.+.. ++|-.. .|--+=-+| ..
T Consensus 301 d~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle 378 (677)
T KOG1915|consen 301 DAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELE 378 (677)
T ss_pred HHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 233444433 26667777777777777777777777777654 333211 111111111 33
Q ss_pred hchHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 017743 309 ANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339 (366)
Q Consensus 309 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 339 (366)
..+.+.+.++|+..++ =|+....||..+.-
T Consensus 379 ~ed~ertr~vyq~~l~-lIPHkkFtFaKiWl 408 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLD-LIPHKKFTFAKIWL 408 (677)
T ss_pred hhhHHHHHHHHHHHHh-hcCcccchHHHHHH
Confidence 5666667777766666 23333445544433
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.08 E-value=1.2e-06 Score=74.92 Aligned_cols=266 Identities=10% Similarity=0.020 Sum_probs=166.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCChh-hHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 017743 18 IAVMGKKGQTRLAMWLFSEMRNSGCRPDPS-VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 96 (366)
Q Consensus 18 i~~~~~~~~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (366)
...+...|++++|.+.++...+. .|+.. .+.. ...+...+...+....+.+.+.... ...+........+...+
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHH
Confidence 44567789999999999998875 34433 3332 1122222223344555566555422 11233344556677788
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCChh
Q 017743 97 AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC-KPDI--ITFNLLIDSYGKRQAFD 173 (366)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~ 173 (366)
...|++++|.+.+++..+.. +.+...+..+..++...|++++|...+++...... .|+. ..|..+...+...|+++
T Consensus 125 ~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 125 EEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999875 34566788888999999999999999999877532 1232 34557888899999999
Q ss_pred HHHHHHHHHHhcCC-CCCHHHH-H--HHHHHHHhcCcHhHHHHH--HHHHHhCCC--CCCHHHHHHHHHHhhccCcHHHH
Q 017743 174 KMEQVFKSLMHSKE-KPTLPTF-N--SMIINYGKARLQGKAEYV--FQKMTAMKY--TPSFITYECIITMYGYCDNVSRA 245 (366)
Q Consensus 174 ~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~~~~~~a~~~--~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a 245 (366)
+|..++++...... .+..... + .++.-+...|....+.++ +........ ............++...|+.+.|
T Consensus 204 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a 283 (355)
T cd05804 204 AALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDAL 283 (355)
T ss_pred HHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHH
Confidence 99999999864332 1222211 1 223333344443333333 211111110 11122223567777889999999
Q ss_pred HHHHHHHHhCCCC------C--CHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 246 REIFDELSKLGKD------M--KVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 246 ~~~~~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
..+++.+...... . .....-...-++...|+.++|.+.+.....
T Consensus 284 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 284 DKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999988763221 0 112222233345678999999999887764
No 80
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.06 E-value=5.7e-08 Score=84.74 Aligned_cols=243 Identities=12% Similarity=0.060 Sum_probs=192.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (366)
+|-...-..+...+...|-...|..+++++.. |..++.+|...|+..+|..+..+..++ +|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 34444456677888899999999999988753 456788999999999999999988874 7899999999
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcH
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 242 (366)
.+......-+++|.++++..... .-..+.....+.+++.++.+.|+.-.+.+ +....+|-.+.-+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 99888888889999998876332 22222233345789999999999887765 55677888888888999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 017743 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322 (366)
Q Consensus 243 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 322 (366)
+.|.+.|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+. -+-..|...+-...+.|.+++|++.+.++
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999999999887655 788999999999999999999999999998884 46677777778889999999999999988
Q ss_pred HhCC-CCCChhHHHHHHHHhhcccc
Q 017743 323 EQNG-IVPNKRFFLEALETFSSSLA 346 (366)
Q Consensus 323 ~~~g-~~~~~~~~~~ll~~~~~~~~ 346 (366)
.+.. ...|..+...++....+...
T Consensus 614 l~~~~~~~d~~vl~~iv~~~~~~~~ 638 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTVLEGMT 638 (777)
T ss_pred HHhhhhcccchhhHHHHHHHHhhcc
Confidence 7531 12266666666666655544
No 81
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.03 E-value=5.7e-07 Score=84.06 Aligned_cols=229 Identities=9% Similarity=0.074 Sum_probs=178.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAP-----DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 157 (366)
|.+...|-..|....+.++.+.|.++.++++.. +.+ -...|.++++.-..-|.-+...++|+++.+. -....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHH
Confidence 444567888888999999999999999998864 211 2356777777777778888899999998876 22356
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS---FITYECIIT 234 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 234 (366)
+|..|...|.+.+.+++|.++++.|.+. ..-....|...+..+.++.+-+.|..++.+..+. -|. .......+.
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHH
Confidence 7888899999999999999999999886 3457788999999999999999999999888765 233 345566667
Q ss_pred HhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH--HHHHHHHHHHHhhchH
Q 017743 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS--STYKLLYKAYTKANMK 312 (366)
Q Consensus 235 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~ 312 (366)
.-.+.|+.+.+..+|+......++ -...|+.+|..-.++|+.+.+..+|++....++.|-. ..|...+..=...|+-
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 777889999999999998887655 6788999999999999999999999999988877643 4556666555556665
Q ss_pred HHHHHH
Q 017743 313 ELVQKL 318 (366)
Q Consensus 313 ~~a~~~ 318 (366)
+.+..+
T Consensus 1688 ~~vE~V 1693 (1710)
T KOG1070|consen 1688 KNVEYV 1693 (1710)
T ss_pred hhHHHH
Confidence 544433
No 82
>PF12854 PPR_1: PPR repeat
Probab=99.02 E-value=4.1e-10 Score=58.77 Aligned_cols=34 Identities=35% Similarity=0.386 Sum_probs=31.4
Q ss_pred ccccCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 017743 5 RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMR 38 (366)
Q Consensus 5 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 38 (366)
+|+.||..+|+++|.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 5889999999999999999999999999999884
No 83
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.99 E-value=1.7e-05 Score=70.32 Aligned_cols=311 Identities=12% Similarity=0.051 Sum_probs=203.9
Q ss_pred CHHHHHHHHHHHHh-cCChhHHHHHHHHHHhc--CC--CCChhhHHHHHHHHhhch-------HHHHHHHHHHHHHHHHh
Q 017743 10 DTGIYSKLIAVMGK-KGQTRLAMWLFSEMRNS--GC--RPDPSVYNALITAHLHTR-------DKAKALAKALGYFQKMK 77 (366)
Q Consensus 10 ~~~~~~~li~~~~~-~~~~~~A~~~~~~~~~~--g~--~p~~~~~~~ll~~~~~~~-------~~~~~~~~a~~~~~~~~ 77 (366)
|+..+-..-..|.+ .+.++++++.-.+.... |. ......|..+--+|.... .+.....++++.+++..
T Consensus 392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av 471 (799)
T KOG4162|consen 392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV 471 (799)
T ss_pred cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH
Confidence 44555544455554 36666666666665541 11 112333333333332111 13344678888888887
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC----
Q 017743 78 GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN-QC---- 152 (366)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~---- 152 (366)
+.++-.|+...|-++ -|+..++++.|.+...+..+.+-..+...|..+.-.+...+++.+|+.+.+...+. |.
T Consensus 472 ~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l 549 (799)
T KOG4162|consen 472 QFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL 549 (799)
T ss_pred hcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 766556655555444 46777899999999999999866778899999999999999999999998876543 11
Q ss_pred --------------CCCHHHHHHHHHHHhc-----------------------cCChhHHHHHHHHHH--------hcC-
Q 017743 153 --------------KPDIITFNLLIDSYGK-----------------------RQAFDKMEQVFKSLM--------HSK- 186 (366)
Q Consensus 153 --------------~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~--------~~~- 186 (366)
.....|+..++..+-. .++..++.+....+. ..+
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 0011222222222210 011111111111110 000
Q ss_pred ----------CCCC------HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH
Q 017743 187 ----------EKPT------LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 250 (366)
Q Consensus 187 ----------~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 250 (366)
..|+ ...|......+.+.+..++|...+.+..... +.....|......+...|.+.+|.+.|.
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 0111 1234455566677777788877777766553 4456677777778888999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH--HHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL--LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 251 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
.....++. ++.+..++..++.+.|+..-|.. ++..+.+.+. .+...|..+...+.+.|+.++|-+.|....+-
T Consensus 709 ~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 709 VALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99887665 68889999999999999888887 9999999874 48999999999999999999999999887653
No 84
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=8.9e-07 Score=69.45 Aligned_cols=293 Identities=13% Similarity=0.110 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (366)
..-+.+.+..+.+..++++|++++..-.++ .| +....+.+-.+|. ....+..|-..++++... .|...-|
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY----~~Q~f~~AA~CYeQL~ql---~P~~~qY 80 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYY----RLQEFALAAECYEQLGQL---HPELEQY 80 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHH----HHHHHHHHHHHHHHHHhh---ChHHHHH
Confidence 344677788888999999999999988776 45 4444455544554 445588999999988652 5665555
Q ss_pred HH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 017743 90 NI-LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM--DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166 (366)
Q Consensus 90 ~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (366)
.. -...+.+.+.+..|.++...|.+. |+...-..-+ ......+++..+..++++....| +..+.+...-..
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCll 154 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLL 154 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchhee
Confidence 43 356677788888898888777642 2221111112 22234566666776766665322 333444444445
Q ss_pred hccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC-------------CH-------
Q 017743 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP-------------SF------- 226 (366)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~------- 226 (366)
.+.|+++.|.+-|+...+-+.......|+..+- ..+.++++.|.+...+++++|++. |.
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence 667777777777777766544445556665443 345677777777777776664321 11
Q ss_pred -HHHHHHHHH-------hhccCcHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH
Q 017743 227 -ITYECIITM-------YGYCDNVSRAREIFDELSKL-GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297 (366)
Q Consensus 227 -~~~~~l~~~-------~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 297 (366)
..-+.++.+ +.+.++++.|.+.+-.|... ....|+.|...+.-.- -.+++.+..+-+.-+.+.++ -...
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~E 311 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPE 311 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChH
Confidence 111233333 23556677776666666432 2233455544332221 13444444444444444443 2356
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHH
Q 017743 298 TYKLLYKAYTKANMKELVQKLLKR 321 (366)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~ 321 (366)
||..++-.|++..-++.|-.++.+
T Consensus 312 TFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhh
Confidence 777777777777777666655543
No 85
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.98 E-value=1.6e-05 Score=69.03 Aligned_cols=315 Identities=10% Similarity=0.106 Sum_probs=184.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCC
Q 017743 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG------CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82 (366)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g------~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 82 (366)
.++..-+-.|..+++.+++++|.+.+...+... .+.+...|.-+....++..++... -....+++.+.. .
T Consensus 167 ~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~s-lnvdaiiR~gi~---r 242 (835)
T KOG2047|consen 167 VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQS-LNVDAIIRGGIR---R 242 (835)
T ss_pred cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcc-cCHHHHHHhhcc---c
Confidence 344556667888889999999999988876431 133445566666666554432211 122334444432 1
Q ss_pred CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---------------------------
Q 017743 83 KPNI--VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK--------------------------- 133 (366)
Q Consensus 83 ~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--------------------------- 133 (366)
-+|. ..|++|.+.|.+.|.++.|..+|++....- .+..-|..+..+|++
T Consensus 243 ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~ 320 (835)
T KOG2047|consen 243 FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLE 320 (835)
T ss_pred CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHH
Confidence 3443 468999999999999999999998877542 223333333333321
Q ss_pred ---------------------------------------cCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHhc
Q 017743 134 ---------------------------------------NGMIKEMESVLSRMKSNQCKP------DIITFNLLIDSYGK 168 (366)
Q Consensus 134 ---------------------------------------~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~ 168 (366)
.|+..+...++.+..+. +.| -...|..+...|-.
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHh
Confidence 11222222333333221 111 12345566677777
Q ss_pred cCChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCC-----------C------CHHH
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPT---LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT-----------P------SFIT 228 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----------~------~~~~ 228 (366)
.|+.+.|..+|++..+...+.- ..+|..-...-.+..+++.|.++++......-. + +...
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 7888888888887766432211 234555555555667777777777665432111 1 1223
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH-HHHHHHHHHHH
Q 017743 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS-STYKLLYKAYT 307 (366)
Q Consensus 229 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 307 (366)
|...+..--..|-++....+++.+.+..+. ++...-.....+-.+..++++.+++++-+..=..|+. ..|+..+..+.
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 445555555667777788888888777654 4444444444455666778888888876654223443 45666666655
Q ss_pred hh---chHHHHHHHHHHHHhCCCCCChh
Q 017743 308 KA---NMKELVQKLLKRMEQNGIVPNKR 332 (366)
Q Consensus 308 ~~---~~~~~a~~~~~~m~~~g~~~~~~ 332 (366)
+. -+.+.|..+|++.++ |.+|...
T Consensus 559 ~rygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 42 368899999999998 7776553
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.94 E-value=1.2e-05 Score=64.62 Aligned_cols=292 Identities=12% Similarity=0.032 Sum_probs=202.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH---HhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH-HH
Q 017743 16 KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA---HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY-NI 91 (366)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~ 91 (366)
-+-..+..+|++.+|+.-|...++ .|+..|.++.+- |. ..|.-.-|+.-+....+ .+||...- .-
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yL----AmGksk~al~Dl~rVle---lKpDF~~ARiQ 111 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYL----AMGKSKAALQDLSRVLE---LKPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHh----hhcCCccchhhHHHHHh---cCccHHHHHHH
Confidence 355667778889999988888875 466666665542 22 22334455555666554 26765432 22
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----h------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 017743 92 LLRACAQARNVDQVNALFKELHESILAPDIY----T------------YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155 (366)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 155 (366)
-...+.+.|.++.|..=|+..++.. |+.. . ....+..+.-.|+...|+.....+.+.. +.|
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wd 188 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWD 188 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cch
Confidence 2355778999999999999988764 2211 1 1233445666889999999999998874 458
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHH----HHH
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT----YEC 231 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~ 231 (366)
...+..-..+|...|++..|+.=++...+. ...+..++..+-..+...|+.+.++...++..+. .||... |-.
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askL-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKL-SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKK 265 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHH
Confidence 888888889999999999998888777665 3446667777788888999999999988888876 455422 211
Q ss_pred ---HH------HHhhccCcHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHH
Q 017743 232 ---II------TMYGYCDNVSRAREIFDELSKLGKDMK---VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299 (366)
Q Consensus 232 ---l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 299 (366)
+. ......++|.++..-.+...+..+... ...+..+-.++...|++.+|+....+..+.. +.|..++
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l 344 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHH
Confidence 11 122345677777777777777654422 2334556667778899999999999988754 2248888
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 300 KLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 300 ~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
.--..+|.-...++.|+.=|+...+.
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 88888998888999998888887763
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=2.8e-07 Score=78.48 Aligned_cols=222 Identities=10% Similarity=0.046 Sum_probs=170.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhH
Q 017743 95 ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174 (366)
Q Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 174 (366)
-+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+.+..+.... |....-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3567899999999999988875 447788999999999999999999999999887533 67788888888999999999
Q ss_pred HHHHHHHHHhcCCCC--------CHHHHHHHHHHHHhcCcHhHHHHHHHHH-HhCCCCCCHHHHHHHHHHhhccCcHHHH
Q 017743 175 MEQVFKSLMHSKEKP--------TLPTFNSMIINYGKARLQGKAEYVFQKM-TAMKYTPSFITYECIITMYGYCDNVSRA 245 (366)
Q Consensus 175 a~~~~~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a 245 (366)
|.+.++.-+...++- +...-.. ..+.....+....++|-++ ...+..+|+.+...|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999998886543210 0000000 0111122233444444444 4455457888888888889999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD-SSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
...|+.+....+. |...||.|...++...+.++|+..|++.++. +|+ +.+...|.-+|...|.+++|.+.|-..+
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999998766 8999999999999999999999999999985 565 4566778889999999999999887654
No 88
>PLN02789 farnesyltranstransferase
Probab=98.88 E-value=1.8e-05 Score=65.58 Aligned_cols=220 Identities=5% Similarity=-0.106 Sum_probs=126.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh--h
Q 017743 97 AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG-MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF--D 173 (366)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~ 173 (366)
...++.++|+.+..++++.. +-+..+|+..-.++...| ++++++..++++.+...+ +..+|+.....+.+.|+. +
T Consensus 48 ~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhH
Confidence 34456667777777766653 123344555445555555 467777777777665433 444555444444444442 5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc---Cc----HHHHH
Q 017743 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC---DN----VSRAR 246 (366)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~----~~~a~ 246 (366)
++..+++++++.. +-+..+|+.....+...|+++++++.+.++++.+ +-+...|+.....+.+. |. .++..
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 5666666666643 2356667766666667777777777777777665 33445555444444333 22 23455
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhc------------
Q 017743 247 EIFDELSKLGKDMKVSTLNAMLEAYCMN----GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN------------ 310 (366)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~------------ 310 (366)
.....+....+. |...|+.+...+... ++..+|.+.+.+....++ .+......|++.|....
T Consensus 204 ~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 204 KYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 555566655544 666777666666652 334557777776665442 25666677777776532
Q ss_pred ------hHHHHHHHHHHH
Q 017743 311 ------MKELVQKLLKRM 322 (366)
Q Consensus 311 ------~~~~a~~~~~~m 322 (366)
..+.|.+++..+
T Consensus 282 ~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 282 LAEELSDSTLAQAVCSEL 299 (320)
T ss_pred cccccccHHHHHHHHHHH
Confidence 235677777777
No 89
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.88 E-value=4.8e-06 Score=76.92 Aligned_cols=269 Identities=13% Similarity=0.076 Sum_probs=170.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (366)
+...+..|+..+...+++++|.++.+...+. .|+...+-.+...+.. ..+...++. .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~---q~~~~~~~~------------------l 86 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSL---SRRPLNDSN------------------L 86 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHH---hhcchhhhh------------------h
Confidence 4667888999999999999999999977664 5655544333332211 111111111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 017743 90 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR 169 (366)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (366)
..++.......++..+..++..+... .-+...+..+..+|-+.|+.+++..+++++.+.. +-|+.+.|.+...|...
T Consensus 87 v~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 87 LNLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 14555555566665555556666654 3355678888889999999999999999998887 44788888998888888
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 017743 170 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIF 249 (366)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 249 (366)
+.++|.+++.+.... +...+++..+..+|.++.... |+. .+.-.++.
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d---------------~d~f~~i~ 210 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDD---------------FDFFLRIE 210 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--ccc---------------chHHHHHH
Confidence 999998888877553 556668888888888888763 221 11222222
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHH-hCCC
Q 017743 250 DELSKL-GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME-QNGI 327 (366)
Q Consensus 250 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-~~g~ 327 (366)
+.+... +..--..++..+...|-..++++++..+++.+.+.... |.....-++.+|. +.+.. ...|++.. -.|+
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l 286 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK--EKYKD-HSLLEDYLKMSDI 286 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH--HHccC-cchHHHHHHHhcc
Confidence 222222 12223455666777777788888888888888876533 6666677777665 33333 33333332 3355
Q ss_pred CCChhHHHHHHHHh
Q 017743 328 VPNKRFFLEALETF 341 (366)
Q Consensus 328 ~~~~~~~~~ll~~~ 341 (366)
.-+...+...|.-|
T Consensus 287 ~~~~~~~~~~i~~f 300 (906)
T PRK14720 287 GNNRKPVKDCIADF 300 (906)
T ss_pred ccCCccHHHHHHHH
Confidence 55545555444444
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.87 E-value=4.3e-05 Score=66.52 Aligned_cols=167 Identities=10% Similarity=0.065 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (366)
+.+.|..+.-.+....++++|+..|......+ +-|...|.-+--.-++.++ ++-.......+.+. .+.....|
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd----~~~~~~tr~~LLql--~~~~ra~w 146 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRD----YEGYLETRNQLLQL--RPSQRASW 146 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHh--hhhhHHHH
Confidence 34456666666666777888888888777653 1133344333222232222 33333333333321 12344567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 017743 90 NILLRACAQARNVDQVNALFKELHESI-LAPDIYTYNGVM------DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162 (366)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (366)
..++.++.-.|+...|..++++..+.. ..|+...+.... ....+.|..++|.+.+..-... +......-..-
T Consensus 147 ~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~k 225 (700)
T KOG1156|consen 147 IGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETK 225 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhH
Confidence 777777777888888888888777654 235554443322 2233455555555554443322 11112222233
Q ss_pred HHHHhccCChhHHHHHHHHHHh
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMH 184 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~ 184 (366)
...+.+.+++++|..++..++.
T Consensus 226 a~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 226 ADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHHHHHhhHHhHHHHHHHHHh
Confidence 4445556666666666666655
No 91
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=1.9e-05 Score=63.70 Aligned_cols=96 Identities=17% Similarity=0.087 Sum_probs=59.2
Q ss_pred HHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhh
Q 017743 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTL-NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS-TYKLLYKAYTKA 309 (366)
Q Consensus 232 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~ 309 (366)
+.++.+..|.+.+|+++|-.+....++ |..+| ..|..+|.+++.++.|+.++-++... .+.. ....+..-|-+.
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHH
Confidence 455566667777777777766655555 44444 34556777788888777776555332 1222 334445567777
Q ss_pred chHHHHHHHHHHHHhCCCCCChhH
Q 017743 310 NMKELVQKLLKRMEQNGIVPNKRF 333 (366)
Q Consensus 310 ~~~~~a~~~~~~m~~~g~~~~~~~ 333 (366)
+.+--|-+.|+.+... .|++..
T Consensus 475 ~eFyyaaKAFd~lE~l--DP~pEn 496 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEIL--DPTPEN 496 (557)
T ss_pred HHHHHHHHhhhHHHcc--CCCccc
Confidence 7777777788777763 344433
No 92
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=4e-05 Score=65.98 Aligned_cols=41 Identities=7% Similarity=0.125 Sum_probs=29.9
Q ss_pred HHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccc
Q 017743 304 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 345 (366)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 345 (366)
..-.+.|+-++|..+++++.+.. ++|..+...++-+++..-
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence 33456788889999999988743 367777888888777653
No 93
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.85 E-value=1.9e-06 Score=66.37 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=59.5
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHh-hccCc--HHHH
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY-GYCDN--VSRA 245 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 245 (366)
.++.+++...++..+.. -+.+...|..+...|...|+++.|...+++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 34444454445444443 22345555555555555555555555555555543 22344444444432 33344 3555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
.+++++..+.++. +...+..+...+...|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555555555443 4455555555555555555555555555544
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=1.2e-06 Score=74.78 Aligned_cols=248 Identities=13% Similarity=0.104 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 141 (366)
+.|.+.+|.-.|+...... |-+...|..|.......++-..|+..+++.++.. +-|....-.|.-.|...|.-.+|.
T Consensus 297 ~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred hcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 4556888888888877543 5678899999999999999999999999999875 336777888888899999999999
Q ss_pred HHHHHHHHCCCCC--------CHHHHHHHHHHHhccCChhHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCcHhHHHH
Q 017743 142 SVLSRMKSNQCKP--------DIITFNLLIDSYGKRQAFDKMEQVFKSLMH-SKEKPTLPTFNSMIINYGKARLQGKAEY 212 (366)
Q Consensus 142 ~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~ 212 (366)
+.++.-.....+- +...-.. ..+.....+....++|-++.. .+..+|+.....|.-.|.-.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 9999876542110 0000000 112222233445555555543 3434778888888888899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC--
Q 017743 213 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM-- 290 (366)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-- 290 (366)
.|+..+... +-|...||.|.-.++...+..+|+..|.+.++..+.. +.+.-.|.-.|...|.+++|.+.|-..+..
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 999999875 5567899999999999999999999999999976553 344455777899999999999888765432
Q ss_pred -------CCCCCHHHHHHHHHHHHhhchHHHHH
Q 017743 291 -------GVTPDSSTYKLLYKAYTKANMKELVQ 316 (366)
Q Consensus 291 -------~~~p~~~~~~~l~~~~~~~~~~~~a~ 316 (366)
+..++...|..|=.++.-.++.|.+.
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 12234467777766777677666444
No 95
>PF12854 PPR_1: PPR repeat
Probab=98.85 E-value=4.8e-09 Score=54.73 Aligned_cols=32 Identities=34% Similarity=0.528 Sum_probs=16.2
Q ss_pred CCCCCHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 017743 291 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322 (366)
Q Consensus 291 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 322 (366)
|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
No 96
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.84 E-value=1e-05 Score=76.05 Aligned_cols=233 Identities=12% Similarity=0.113 Sum_probs=176.0
Q ss_pred CCC-hhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 017743 43 RPD-PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP---NIVTYNILLRACAQARNVDQVNALFKELHESILA 118 (366)
Q Consensus 43 ~p~-~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 118 (366)
.|+ ...|-..|.... ..+..++|.+++++....-.+.- -.-.|.++++.-...|.-+...++|+++.+.-
T Consensus 1454 sPNSSi~WI~YMaf~L----elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-- 1527 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHL----ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-- 1527 (1710)
T ss_pred CCCcchHHHHHHHHHh----hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--
Confidence 454 456777777777 44559999999988874322211 12357777777777888899999999998752
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC-CHHHHHHH
Q 017743 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP-TLPTFNSM 197 (366)
Q Consensus 119 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 197 (366)
-.-..|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.+.++.-+.- -.......
T Consensus 1528 d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Iskf 1606 (1710)
T KOG1070|consen 1528 DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKF 1606 (1710)
T ss_pred chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHH
Confidence 23456888999999999999999999999886 33578899999999999999999999999998852221 23344555
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcC
Q 017743 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK--VSTLNAMLEAYCMNG 275 (366)
Q Consensus 198 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g 275 (366)
+..-.+.|+.+++..+|+...... +--...|+..++.-.+.|+.+.++.+|+++...++.|. ...|...+..--..|
T Consensus 1607 AqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~G 1685 (1710)
T KOG1070|consen 1607 AQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHG 1685 (1710)
T ss_pred HHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcC
Confidence 666678899999999999988763 44567899999999999999999999999999877653 234555555555556
Q ss_pred ChhHHHHH
Q 017743 276 LPTEADLL 283 (366)
Q Consensus 276 ~~~~a~~~ 283 (366)
+-+.++.+
T Consensus 1686 de~~vE~V 1693 (1710)
T KOG1070|consen 1686 DEKNVEYV 1693 (1710)
T ss_pred chhhHHHH
Confidence 65444433
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.82 E-value=1.9e-06 Score=68.93 Aligned_cols=187 Identities=14% Similarity=0.016 Sum_probs=123.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCH--HHH
Q 017743 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK-P-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL--PTF 194 (366)
Q Consensus 119 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 194 (366)
.....+..+...+.+.|++++|...++++...... | ....+..+..++...|++++|...++++.+..+.... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34566777778888889999999999888775321 1 1245677788888889999999999988775332121 134
Q ss_pred HHHHHHHHhc--------CcHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHH
Q 017743 195 NSMIINYGKA--------RLQGKAEYVFQKMTAMKYTPSF-ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265 (366)
Q Consensus 195 ~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 265 (366)
..+..++... |+++.|.+.++.+.... |+. ..+..+..... ... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 4445555543 66777888888777653 332 22222211100 000 00 01122
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 266 AMLEAYCMNGLPTEADLLFENSHNMGV--TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 266 ~li~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
.+...+.+.|++++|...++...+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456678899999999999999887532 123578889999999999999999998888764
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.82 E-value=2e-06 Score=68.81 Aligned_cols=188 Identities=13% Similarity=-0.016 Sum_probs=126.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--H
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI---YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI--I 157 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 157 (366)
......+..+...+...|+++.|...++++.... +.+. .++..+..++.+.|++++|...++++.+....... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677888888999999999999999988753 1122 46677888899999999999999999876432111 2
Q ss_pred HHHHHHHHHhcc--------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHH
Q 017743 158 TFNLLIDSYGKR--------QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229 (366)
Q Consensus 158 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 229 (366)
++..+..++... |+++.|.+.|+.+....+. +...+..+..... ... .. ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~--------~~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH--------HHHH
Confidence 344455555543 7889999999999875322 2222222211110 000 00 0111
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 230 ECIITMYGYCDNVSRAREIFDELSKLGKD--MKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 230 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
..+...+.+.|++++|...++...+..+. .....+..+..++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 24556678889999999999888876332 23577888899999999999999988887654
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=6e-06 Score=64.95 Aligned_cols=263 Identities=13% Similarity=0.055 Sum_probs=179.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (366)
+......+...|-...++..|-+.|+++-.. .|...-|... ++++..+.+.+.+|+.+...|.. .|+...-
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY---~AQSLY~A~i~ADALrV~~~~~D----~~~L~~~ 113 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLY---QAQSLYKACIYADALRVAFLLLD----NPALHSR 113 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHH---HHHHHHHhcccHHHHHHHHHhcC----CHHHHHH
Confidence 5566777888888999999999999999765 5655555432 22333366678999999988874 3443322
Q ss_pred HHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 017743 90 NILLRA--CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167 (366)
Q Consensus 90 ~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (366)
..-+.+ ....+++..+..++++....| +..+.+.......+.|+++.|.+-|+...+.+--.....|+..+ +..
T Consensus 114 ~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy 189 (459)
T KOG4340|consen 114 VLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHY 189 (459)
T ss_pred HHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHH
Confidence 222222 335778888888888766433 56666777777789999999999999988765443566676555 455
Q ss_pred ccCChhHHHHHHHHHHhcCCC-------------CCHH--------HHHHHHHH-------HHhcCcHhHHHHHHHHHHh
Q 017743 168 KRQAFDKMEQVFKSLMHSKEK-------------PTLP--------TFNSMIIN-------YGKARLQGKAEYVFQKMTA 219 (366)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~-------------~~~~--------~~~~li~~-------~~~~~~~~~a~~~~~~~~~ 219 (366)
+.|+++.|++...++++.|+. ||+. .-+.++.+ +.+.++++.|.+.+-.|.-
T Consensus 190 ~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPP 269 (459)
T KOG4340|consen 190 SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPP 269 (459)
T ss_pred hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCC
Confidence 678999999999999887753 2221 12233333 4567888888888877763
Q ss_pred C-CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 220 M-KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 220 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
+ ....|+.|...+.-.-. .+++.+..+-+..+...++- ...||..++-.||++.-++.|-.++.+-
T Consensus 270 RaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 270 RAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred cccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 3 23456677665543322 45566666667777777664 4788888999999999999888887653
No 100
>PLN02789 farnesyltranstransferase
Probab=98.81 E-value=1.8e-05 Score=65.55 Aligned_cols=167 Identities=7% Similarity=0.016 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHH
Q 017743 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMI--KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179 (366)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 179 (366)
+++++..++++.+... -+..+|+.....+.+.|.. ++++.+++++.+...+ |..+|+....++...|+++++++.+
T Consensus 88 l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 88 LEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4455555555444321 1333343333333333331 3444555455444322 4455555555555555555555555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhc---Cc----HhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc----CcHHHHHHH
Q 017743 180 KSLMHSKEKPTLPTFNSMIINYGKA---RL----QGKAEYVFQKMTAMKYTPSFITYECIITMYGYC----DNVSRAREI 248 (366)
Q Consensus 180 ~~~~~~~~~~~~~~~~~li~~~~~~---~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~ 248 (366)
+++++.++. +...|+.....+.+. |. .++......+.+... +-+...|+.+...+... ++..+|...
T Consensus 166 ~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 555554322 333444333333222 11 123444444444432 33445555555555442 233445555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh
Q 017743 249 FDELSKLGKDMKVSTLNAMLEAYCM 273 (366)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~li~~~~~ 273 (366)
+.+..+.++. +......|+..|+.
T Consensus 244 ~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 244 CLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHhhcccCC-cHHHHHHHHHHHHh
Confidence 5555554333 45556666666654
No 101
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.80 E-value=4.6e-06 Score=64.41 Aligned_cols=157 Identities=8% Similarity=-0.033 Sum_probs=79.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 017743 125 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204 (366)
Q Consensus 125 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 204 (366)
..+-..+...|+-+....+........ +.+.......+....+.|++..|...+++.... -++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 344444555555555555544433221 223344444555555555555555555555443 334555555555555555
Q ss_pred CcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 017743 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 284 (366)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 284 (366)
|+++.|..-|.+..+.. .-++..++.+.-.+.-.|+++.|..++......+.. |..+-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 55555555555555442 223344455555555555555555555555544322 4444455555555555555555544
Q ss_pred H
Q 017743 285 E 285 (366)
Q Consensus 285 ~ 285 (366)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 3
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.78 E-value=5.3e-06 Score=63.89 Aligned_cols=118 Identities=10% Similarity=0.099 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCc--HhHHH
Q 017743 135 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY-GKARL--QGKAE 211 (366)
Q Consensus 135 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~~a~ 211 (366)
++.+++...++...+.. +.+...|..+...|...|+++.|...|++..... +.+...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34444444444444432 2244455555555555555555555555554432 12344444444432 33343 25555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
+++++..+.+ +.+...+..+...+...|++++|...|+.+.+.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555555443 223444445555555555555555555555444
No 103
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=8e-05 Score=63.47 Aligned_cols=312 Identities=14% Similarity=0.066 Sum_probs=187.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHH
Q 017743 19 AVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN-IVTYNILLRACA 97 (366)
Q Consensus 19 ~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 97 (366)
.+.+..|+++.|+.+|.+.+... +++...|+.-..+++ ..+++++|++--.+..+ +.|+ ...|+....++.
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a----~~~~~~~al~da~k~~~---l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYA----SLGSYEKALKDATKTRR---LNPDWAKGYSRKGAALF 81 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHH----HHhhHHHHHHHHHHHHh---cCCchhhHHHHhHHHHH
Confidence 45677899999999999988764 336777888888887 44557777766666554 2555 457888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-------------------------------------------
Q 017743 98 QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN------------------------------------------- 134 (366)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~------------------------------------------- 134 (366)
-.|++++|..-|.+-++.. +.|...++.+..++...
T Consensus 82 ~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred hcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 8899999988887766542 22333333333322100
Q ss_pred --------CCHHHHHHHHHHH-----HHCC-------CCC------------C----------HHHHHHHHHHHhccCCh
Q 017743 135 --------GMIKEMESVLSRM-----KSNQ-------CKP------------D----------IITFNLLIDSYGKRQAF 172 (366)
Q Consensus 135 --------~~~~~a~~~~~~~-----~~~~-------~~~------------~----------~~~~~~l~~~~~~~~~~ 172 (366)
.++..+.-.+... ...+ ..| + ..-...+..+..+..++
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 0000010000000 0000 001 0 00123344444444555
Q ss_pred hHHHHHHHHHHhc---------------------------------CCCCCHHHHH-------HHHHHHHhcCcHhHHHH
Q 017743 173 DKMEQVFKSLMHS---------------------------------KEKPTLPTFN-------SMIINYGKARLQGKAEY 212 (366)
Q Consensus 173 ~~a~~~~~~~~~~---------------------------------~~~~~~~~~~-------~li~~~~~~~~~~~a~~ 212 (366)
+.|.+.+...++. |.. ...-|+ .+..+|.+.++++.+..
T Consensus 241 ~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 241 ETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 5554444443332 111 011122 22335556677888888
Q ss_pred HHHHHHhCCCCCCHHHH-------------------------HHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 017743 213 VFQKMTAMKYTPSFITY-------------------------ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267 (366)
Q Consensus 213 ~~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 267 (366)
.|.+.......|+...- ..-...+.+.|++..|...|.++++..+. |...|..-
T Consensus 320 ~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNR 398 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNR 398 (539)
T ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHH
Confidence 88776655444443221 11234556778899999999998888755 88889989
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 017743 268 LEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344 (366)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 344 (366)
.-+|.+.|.+..|++-.+...+.+ ++....|..=..++....+++.|.+.|++-++.. |+..-+..-++-|...
T Consensus 399 Aac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 399 AACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHH
Confidence 999999999999988888877764 3345556555666677788999999999988854 7776666666666554
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=1.3e-06 Score=76.54 Aligned_cols=223 Identities=10% Similarity=0.071 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 141 (366)
..|-...|+.+|+++. .|.-.|.+|...|+.++|..+..+..+. +||...|..+.+......-+++|.
T Consensus 410 slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkaw 477 (777)
T KOG1128|consen 410 SLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAW 477 (777)
T ss_pred HcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHH
Confidence 4455788888888765 3677888999999999999998888773 688889999888888887888898
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.+++..|.+.|.......
T Consensus 478 Elsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 478 ELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 888875432 12222233345789999999999877652 3356788888888889999999999999888753
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-CCCCHHHHH
Q 017743 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG-VTPDSSTYK 300 (366)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~ 300 (366)
+-+...||.+-.+|.+.++-.+|...+.+..+.+.. +...|...+....+.|.+++|++.+.++.... -.-|..+..
T Consensus 550 -Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~ 627 (777)
T KOG1128|consen 550 -PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLL 627 (777)
T ss_pred -CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhH
Confidence 334678999999999999999999999999998744 67888888889999999999999998876431 011444444
Q ss_pred HHHHHH
Q 017743 301 LLYKAY 306 (366)
Q Consensus 301 ~l~~~~ 306 (366)
.++...
T Consensus 628 ~iv~~~ 633 (777)
T KOG1128|consen 628 IIVRTV 633 (777)
T ss_pred HHHHHH
Confidence 444443
No 105
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=2.4e-05 Score=60.61 Aligned_cols=244 Identities=17% Similarity=0.104 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH-
Q 017743 63 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME- 141 (366)
Q Consensus 63 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~- 141 (366)
.|.+..++..-..... .+.+...-.-+.++|...|....... ++.... .|....+..+.......++.++.+
T Consensus 21 ~Gnyq~~ine~~~~~~---~~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSS---SKTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred hhHHHHHHHHHHhhcc---ccchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHH
Confidence 3446555555444332 12344444455666766666543332 222221 333334433333333344444333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
++.+.+.......+......-...|+..|++++|++..... . +......=+..+.+..+.+-|.+.++.|.+.
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i- 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQI- 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence 34444444433334344444455678888888888877652 1 2333333345556777788888888888864
Q ss_pred CCCCHHHHHHHHHHhhc----cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH
Q 017743 222 YTPSFITYECIITMYGY----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 297 (366)
Q Consensus 222 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 297 (366)
.+..+.+.|.+++.+ .+....|.-+|++|.++ ..|+..+.+....++...|++++|..++++....... ++.
T Consensus 167 --ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpe 242 (299)
T KOG3081|consen 167 --DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPE 242 (299)
T ss_pred --chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHH
Confidence 245566656555543 45678888888888775 4567888888888888888888888888888877543 677
Q ss_pred HHHHHHHHHHhhchHHHH-HHHHHHHHh
Q 017743 298 TYKLLYKAYTKANMKELV-QKLLKRMEQ 324 (366)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a-~~~~~~m~~ 324 (366)
+...++-+-...|+..++ .+.+..+..
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 777777666666665443 344444444
No 106
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.75 E-value=6.2e-06 Score=63.69 Aligned_cols=159 Identities=13% Similarity=0.035 Sum_probs=93.1
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 017743 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239 (366)
Q Consensus 160 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 239 (366)
..+-..+...|+-+....+....... ...|.......+....+.|++..|...+++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44444555556666555555554332 22344444455666666666666666666666554 55666666666666666
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHH
Q 017743 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319 (366)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (366)
|+++.|..-|.+..+..+. ++..++.+.-.+.-.|+++.|..++......+. -|..+-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 6666666666666665333 455556666666666666666666666655432 25555566666666666666666554
Q ss_pred HHH
Q 017743 320 KRM 322 (366)
Q Consensus 320 ~~m 322 (366)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 443
No 107
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=5.9e-05 Score=63.60 Aligned_cols=204 Identities=12% Similarity=0.052 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERC-KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 140 (366)
...++.++...-+.++...+. .|+...+...+........-..+...+.+..+ +-......-....+...|++++|
T Consensus 249 p~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A 325 (484)
T COG4783 249 PEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEA 325 (484)
T ss_pred chhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchH
Confidence 344566666666666543222 34455555555554444333333333333222 11222223333344566777888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCcHhHHHHHHHHHHh
Q 017743 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT-LPTFNSMIINYGKARLQGKAEYVFQKMTA 219 (366)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 219 (366)
+..+..+.... +-|...+....+.+.+.++.++|.+.++++... .|+ ......+..++.+.|++.+|+.+++....
T Consensus 326 ~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~ 402 (484)
T COG4783 326 LKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF 402 (484)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 88888777652 335555566667777788888888888777764 333 55556667777777888877777777766
Q ss_pred CCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 220 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
.. +-|+..|..|.++|...|+..++..-. ...+...|++++|...+....+.
T Consensus 403 ~~-p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 403 ND-PEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred cC-CCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 54 556777777878777777766654432 33455567777777777666554
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.74 E-value=1.9e-06 Score=62.74 Aligned_cols=95 Identities=12% Similarity=0.009 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 017743 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273 (366)
Q Consensus 194 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 273 (366)
+......+...|++++|...|+...... +.+...|..+..++...|++++|...|+.....++. +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 3345555666677777777777666654 445566666666677777777777777777665543 56666666667777
Q ss_pred cCChhHHHHHHHHhhhC
Q 017743 274 NGLPTEADLLFENSHNM 290 (366)
Q Consensus 274 ~g~~~~a~~~~~~~~~~ 290 (366)
.|++++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766664
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.72 E-value=8.3e-05 Score=72.08 Aligned_cols=307 Identities=9% Similarity=0.011 Sum_probs=189.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCC------CChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC----
Q 017743 16 KLIAVMGKKGQTRLAMWLFSEMRNSGCR------PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN---- 85 (366)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~g~~------p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 85 (366)
.....+...|++++|..+++.....--. +....-...+.+.. ....|++++|...++....... ..+
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~g~~~~A~~~~~~al~~~~-~~~~~~~ 490 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV--AINDGDPEEAERLAELALAELP-LTWYYSR 490 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH--HHhCCCHHHHHHHHHHHHhcCC-CccHHHH
Confidence 3445566789999999999887543111 11111111111111 1134558888888887654211 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C
Q 017743 86 IVTYNILLRACAQARNVDQVNALFKELHESILA---P--DIYTYNGVMDAYGKNGMIKEMESVLSRMKSN----QCK--P 154 (366)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~ 154 (366)
....+.+...+...|++++|...+.+....... + ...++..+...+...|++++|...+++.... +.. +
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 234556667778899999999999887753211 1 1234455667788899999999998876542 211 1
Q ss_pred -CHHHHHHHHHHHhccCChhHHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC--CCCCHH
Q 017743 155 -DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK--EKP--TLPTFNSMIINYGKARLQGKAEYVFQKMTAMK--YTPSFI 227 (366)
Q Consensus 155 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ 227 (366)
....+..+...+...|++++|...+.+..... ..+ ....+..+...+...|+++.|...+....... ......
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~ 650 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD 650 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence 22334455566777899999999988875531 112 23344445667778899999999988875421 111110
Q ss_pred --HH--HHHHHHhhccCcHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhhhC----CCCCC-
Q 017743 228 --TY--ECIITMYGYCDNVSRAREIFDELSKLGKDMK---VSTLNAMLEAYCMNGLPTEADLLFENSHNM----GVTPD- 295 (366)
Q Consensus 228 --~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~- 295 (366)
.. ...+..+...|+.+.|...+........... ...+..+..++...|++++|...+++.... |..++
T Consensus 651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 10 1122344557899999988777554321111 112345677788899999999999887653 32222
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 296 SSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
..+...+..++...|+.++|...+.+..+.
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345667777889999999999999988764
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.70 E-value=2e-05 Score=72.00 Aligned_cols=186 Identities=8% Similarity=-0.020 Sum_probs=139.7
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHH
Q 017743 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231 (366)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 231 (366)
...+...+-.|.......|.+++|..+++...+. .+.+......+...+.+.+++++|....++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 3456888888999999999999999999999885 23356677788888999999999999999998875 445677888
Q ss_pred HHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhch
Q 017743 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311 (366)
Q Consensus 232 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 311 (366)
+..++...|++++|..+|+++...+.. +..++..+..++-..|+.++|...|+...+.- .|....|+.++ ++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HH
Confidence 888889999999999999999985443 57888899999999999999999999887753 44556665554 33
Q ss_pred HHHHHHHHHHHHhC----CCCCChhHHHHHHHHhhccccc
Q 017743 312 KELVQKLLKRMEQN----GIVPNKRFFLEALETFSSSLAG 347 (366)
Q Consensus 312 ~~~a~~~~~~m~~~----g~~~~~~~~~~ll~~~~~~~~~ 347 (366)
...-..+++++.-. |.......+...|.-+.+--..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRRNA 271 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcCcc
Confidence 44445556666533 3333445566777766655433
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.69 E-value=2.7e-05 Score=71.18 Aligned_cols=135 Identities=11% Similarity=0.064 Sum_probs=106.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (366)
+.+...+..|.....+.|..++|..+++.+.+.. +-+......+...+.+.+++++|+..+++....... +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 4567888888888888889999998888888763 234566777788888888899998888888877432 56667777
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 220 (366)
..++.+.|++++|..+|+++... .+.+..++..+..++...|+.++|...|+...+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 78888888999999999888873 3345778888888888888888888888888765
No 112
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=0.0001 Score=66.16 Aligned_cols=285 Identities=13% Similarity=0.084 Sum_probs=157.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-C--------CCCC-hhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcC
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-G--------CRPD-PSVYNALITAHLHTRDKAKALAKALGYFQKMKGM 79 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-g--------~~p~-~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (366)
+..+|..+.+.|.+..+++-|.-.+..|... | -.|+ ...-.+++. . ..|.+++|+.++++-++
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA--i----eLgMlEeA~~lYr~ckR- 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA--I----ELGMLEEALILYRQCKR- 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH--H----HHhhHHHHHHHHHHHHH-
Confidence 4567889999999999998888888777532 1 1121 111111111 1 55678999999988775
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----------H
Q 017743 80 ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK----------S 149 (366)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----------~ 149 (366)
|..|=..|...|.+++|.++-+.=.+.. -..||......+-..++.+.|++.|++.. .
T Consensus 829 ---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~ 896 (1416)
T KOG3617|consen 829 ---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK 896 (1416)
T ss_pred ---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH
Confidence 4455566777899999988876533221 23566666777777888888888877531 1
Q ss_pred CC---------CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcC--------------------CCCCHHHHHHHHHH
Q 017743 150 NQ---------CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK--------------------EKPTLPTFNSMIIN 200 (366)
Q Consensus 150 ~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~li~~ 200 (366)
.. -..|...|.-....+-..|+.+.|+.+|....+.- ..-|......+...
T Consensus 897 e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~ 976 (1416)
T KOG3617|consen 897 EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARM 976 (1416)
T ss_pred hChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHH
Confidence 11 11244445555555666788888888877654320 01233344445555
Q ss_pred HHhcCcHhHHHHHHHHHHhCC--------CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 017743 201 YGKARLQGKAEYVFQKMTAMK--------YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272 (366)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 272 (366)
|...|++.+|..+|.+..... -..+...+|..+ .....+.-.|-+.|++. |. -+...+..|-
T Consensus 977 YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal--~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYH 1046 (1416)
T KOG3617|consen 977 YENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLAL--MSGGSDLVSAARYYEEL---GG-----YAHKAVMLYH 1046 (1416)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh--hcCchhHHHHHHHHHHc---ch-----hhhHHHHHHH
Confidence 555555555555555443210 000011111100 00111122222222221 10 1223344566
Q ss_pred hcCChhHHHHHHHH--------hh--hCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 273 MNGLPTEADLLFEN--------SH--NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 273 ~~g~~~~a~~~~~~--------~~--~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
+.|.+.+|+++.-+ ++ +.....|+...+.-.+.|....+++.|..++-..+
T Consensus 1047 kAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1047 KAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred hhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 77777777665322 11 22334567777777778888888888887765543
No 113
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=6.2e-05 Score=60.89 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=56.0
Q ss_pred HhHHHHHHHHHHhCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 017743 207 QGKAEYVFQKMTAMKYTPSF-ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285 (366)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 285 (366)
..-|.+.|+-.-..+..-|. ..-.++..++.-..++++.+..+..+...-..-|...+ .+.++++..|++.+|+++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHh
Confidence 34445555444443332221 12233344444455566666666665554222222222 35566666666666666666
Q ss_pred HhhhCCCCCCHHHH-HHHHHHHHhhchHHHHHHHHHH
Q 017743 286 NSHNMGVTPDSSTY-KLLYKAYTKANMKELVQKLLKR 321 (366)
Q Consensus 286 ~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~ 321 (366)
......++ |..+| ..|.++|.+.++.+.|+.++-+
T Consensus 418 ~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 418 RISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred hhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 65544444 34444 3444556666666666554433
No 114
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.66 E-value=0.00014 Score=63.44 Aligned_cols=311 Identities=8% Similarity=0.038 Sum_probs=194.5
Q ss_pred cCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCH
Q 017743 8 IADTGI-YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI 86 (366)
Q Consensus 8 ~~~~~~-~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 86 (366)
+|-..+ |..++. +-..+++...+.+.+.+.+. .|+..---+ |.++.- ...|+-++|......-.+ +...+.
T Consensus 4 ~~KE~~lF~~~lk-~yE~kQYkkgLK~~~~iL~k--~~eHgeslA-mkGL~L--~~lg~~~ea~~~vr~glr--~d~~S~ 75 (700)
T KOG1156|consen 4 SPKENALFRRALK-CYETKQYKKGLKLIKQILKK--FPEHGESLA-MKGLTL--NCLGKKEEAYELVRLGLR--NDLKSH 75 (700)
T ss_pred ChHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHh--CCccchhHH-hccchh--hcccchHHHHHHHHHHhc--cCcccc
Confidence 344334 344444 55778888888888888764 232221111 111110 133457788888777664 335677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (366)
++|..+.-.+....++++|++.|......+ +-|...+.-+--.-++.++++........+.+.. +.....|..+..++
T Consensus 76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~ 153 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQ 153 (700)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHH
Confidence 889999888888999999999999999875 4467777777777778888888888888777753 33566788888888
Q ss_pred hccCChhHHHHHHHHHHhcCC-CCCHHHHHHHHH------HHHhcCcHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHhhc
Q 017743 167 GKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMII------NYGKARLQGKAEYVFQKMTAMKYTPSFI-TYECIITMYGY 238 (366)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 238 (366)
.-.|+...|..+++...+... .|+...+.-... ...+.|..+.|.+.+...... ..|.. .-..-...+.+
T Consensus 154 ~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 154 HLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHH
Confidence 889999999999999887642 456555544332 334567777777666554432 12222 22344556778
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHhhhCCCCCCHHHHHHH-HHHHHhhchHHHHH
Q 017743 239 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM-NGLPTEADLLFENSHNMGVTPDSSTYKLL-YKAYTKANMKELVQ 316 (366)
Q Consensus 239 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~ 316 (366)
.+++++|..++..+...++. +...|..+..++.+ .+..+....+|....+. .|-...-..+ +.........+...
T Consensus 232 l~~lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vd 308 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVD 308 (700)
T ss_pred HhhHHhHHHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHH
Confidence 89999999999999997644 44455555555543 33333333666665443 1111111111 11111133344556
Q ss_pred HHHHHHHhCCCCCChhH
Q 017743 317 KLLKRMEQNGIVPNKRF 333 (366)
Q Consensus 317 ~~~~~m~~~g~~~~~~~ 333 (366)
+++..+.+.|+++-...
T Consensus 309 kyL~~~l~Kg~p~vf~d 325 (700)
T KOG1156|consen 309 KYLRPLLSKGVPSVFKD 325 (700)
T ss_pred HHHHHHhhcCCCchhhh
Confidence 67777788887664433
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.65 E-value=6.1e-06 Score=60.12 Aligned_cols=94 Identities=9% Similarity=-0.050 Sum_probs=53.6
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC
Q 017743 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240 (366)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 240 (366)
.....+...|++++|...|+...... +.+...|..+..++...|++++|...|+...... +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34455555666666666666655532 2245555555666666666666666666666543 334555555666666666
Q ss_pred cHHHHHHHHHHHHhCC
Q 017743 241 NVSRAREIFDELSKLG 256 (366)
Q Consensus 241 ~~~~a~~~~~~~~~~~ 256 (366)
++++|...|+...+..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6666666666655543
No 116
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.63 E-value=2.9e-06 Score=61.38 Aligned_cols=94 Identities=12% Similarity=-0.031 Sum_probs=46.1
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 017743 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308 (366)
Q Consensus 229 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 308 (366)
...+...+...|++++|...|+.+...++. +...+..+...+...|++++|...++...+.+ +.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 334444444455555555555555444322 44445555555555555555555555544433 2234444444555555
Q ss_pred hchHHHHHHHHHHHHh
Q 017743 309 ANMKELVQKLLKRMEQ 324 (366)
Q Consensus 309 ~~~~~~a~~~~~~m~~ 324 (366)
.|+++.|...++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555554
No 117
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=5.4e-05 Score=69.32 Aligned_cols=246 Identities=16% Similarity=0.218 Sum_probs=142.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 017743 19 AVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 98 (366)
Q Consensus 19 ~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 98 (366)
..+...+-+++|..+|++.. .+....+.++. ..+.+++|.++-++.. .+..|..+..+-.+
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie-------~i~~ldRA~efAe~~n-------~p~vWsqlakAQL~ 1116 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE-------NIGSLDRAYEFAERCN-------EPAVWSQLAKAQLQ 1116 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH-------HhhhHHHHHHHHHhhC-------ChHHHHHHHHHHHh
Confidence 44455556667777666543 23444444443 3344666666655543 34568888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHH
Q 017743 99 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178 (366)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 178 (366)
.|.+.+|++-|-+. -|+..|..++....+.|.+++-.+++....+..-.|.+. +.++-+|.+.++..+.++.
T Consensus 1117 ~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1117 GGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred cCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH
Confidence 88888887766432 266778888888888888888888887777665555544 4677788888877766554
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH-------
Q 017743 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE------- 251 (366)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------- 251 (366)
+ .-|+......+..-|...+.++.|.-+|.... .|..|...+...|+++.|...-+.
T Consensus 1189 i-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktW 1252 (1666)
T KOG0985|consen 1189 I-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKANSTKTW 1252 (1666)
T ss_pred h-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhccchhHH
Confidence 3 34566666666666666666666665554432 244444444445555444332221
Q ss_pred -----------------HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 017743 252 -----------------LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308 (366)
Q Consensus 252 -----------------~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 308 (366)
|-..++-....-...++..|-..|.+++.+.+++...... +.....|+-|.-.|++
T Consensus 1253 K~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHh
Confidence 1112222234445556666666666666666655443221 1223344444444444
No 118
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.62 E-value=0.00028 Score=68.49 Aligned_cols=262 Identities=8% Similarity=0.013 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHhcCCC-----CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHH
Q 017743 64 KALAKALGYFQKMKGMER-----CKPN--IVTYNILLRACAQARNVDQVNALFKELHESILAPDI----YTYNGVMDAYG 132 (366)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~-----~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~ 132 (366)
++++++...+........ ..+. ......+...+...|+++.|...+++....-...+. ...+.+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 346676666665532110 0111 122223344566789999999999988763111121 23455566677
Q ss_pred hcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhc----CCC--C-CHHHHHHHHHH
Q 017743 133 KNGMIKEMESVLSRMKSN----QC-KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS----KEK--P-TLPTFNSMIIN 200 (366)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~ 200 (366)
..|++++|...+.+.... |. .....++..+...+...|+++.|...+++.... +.. + ....+..+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 899999999998887642 11 111234455667788899999999988876542 211 1 12334455566
Q ss_pred HHhcCcHhHHHHHHHHHHhCC--CCC--CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC-CHHHH-----HHHHHH
Q 017743 201 YGKARLQGKAEYVFQKMTAMK--YTP--SFITYECIITMYGYCDNVSRAREIFDELSKLGKDM-KVSTL-----NAMLEA 270 (366)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~ 270 (366)
+...|++++|...+.+..... ..+ ....+..+...+...|+.++|...++......... ....+ ...+..
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 777899999999988775431 112 23345556667788999999999888875421110 11111 112244
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 271 YCMNGLPTEADLLFENSHNMGVTPD---SSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
+...|+.+.|..++........... ...+..+..++...|+.++|...+++....
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5568899999998877654321111 112456777888899999999999887653
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.58 E-value=5.7e-05 Score=70.10 Aligned_cols=234 Identities=12% Similarity=0.045 Sum_probs=141.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT-YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (366)
+.+...+..|+..+...+++++|.++.+...+. .|+... |..+...+.+.++.+++..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 445678889999999999999999999977765 455433 33333455556664444333 3
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 241 (366)
++.......++..+..+...+.+. .-+...+..+..+|-+.|+.+++..+|+++.+.. +-+..+.|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 444444555554445555555542 2344466677777778888888888888887776 55677777777777777 7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHh--cCChhHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHhhchHHHH
Q 017743 242 VSRAREIFDELSKLGKDMKVSTLNAMLE---AYCM--NGLPTEADLLFENSHNM-GVTPDSSTYKLLYKAYTKANMKELV 315 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~li~---~~~~--~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a 315 (366)
+++|.+++.......+ +..-|+.+.. -++. ..+.+.-..+.+.+... |..--..++..+...|...++|+++
T Consensus 165 L~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 165 KEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 8888777776655311 0001111111 1111 11223333333333332 3233445666677788888999999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHhh
Q 017743 316 QKLLKRMEQNGIVPNKRFFLEALETFS 342 (366)
Q Consensus 316 ~~~~~~m~~~g~~~~~~~~~~ll~~~~ 342 (366)
..+++.+.+..- -|......++.+|.
T Consensus 243 i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 243 IYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 999999998532 24455666666665
No 120
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=9.5e-05 Score=57.44 Aligned_cols=258 Identities=13% Similarity=0.094 Sum_probs=163.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Q 017743 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88 (366)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 88 (366)
|+...|+ ++-+.-.|.+..++..-+..... +-+...-..+-++|...| +......+++. +-.|....
T Consensus 8 ~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg-------~~~~~~~eI~~--~~~~~lqA 74 (299)
T KOG3081|consen 8 PEDELFN--IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALG-------QYQIVISEIKE--GKATPLQA 74 (299)
T ss_pred cchhHHH--HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcc-------ccccccccccc--ccCChHHH
Confidence 4444453 45555678888777765554432 123333333334443222 22223334432 11334444
Q ss_pred HHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 017743 89 YNILLRACAQARNVDQVN-ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (366)
+..+......-++.+.-. ++.+.+.......+......-...|+..|++++|++...... +......=...+.
T Consensus 75 vr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~l 148 (299)
T KOG3081|consen 75 VRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILL 148 (299)
T ss_pred HHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHH
Confidence 444444444444444433 344444444333333334444567889999999999988722 3344444455667
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHH
Q 017743 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK----ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243 (366)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 243 (366)
+..+++.|.+.++.|.+. .+..+.+.|.+++.+ .+...+|.-+|++|.++- +|++.+.+....++...|+++
T Consensus 149 k~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHH
Confidence 888899999999999773 255666667666654 357889999999998753 789999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHhhhC
Q 017743 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA-DLLFENSHNM 290 (366)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~~ 290 (366)
+|..+++....+..+ ++.+...+|-+-...|...++ .+.+..++..
T Consensus 225 eAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 225 EAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 999999999988766 677777777777777766554 5666666654
No 121
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.56 E-value=6.9e-06 Score=59.40 Aligned_cols=106 Identities=13% Similarity=0.094 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017743 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270 (366)
Q Consensus 191 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 270 (366)
......+...+...|++++|...++.+...+ +.+...+..+...+...|++++|..+++...+.++. +...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 3445556666677777777777777776654 445667777777777777777777777777666533 56666667777
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCCHHHHH
Q 017743 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYK 300 (366)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 300 (366)
+...|++++|...|+...+. .|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 77778888888877777764 34444433
No 122
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=0.00016 Score=55.76 Aligned_cols=186 Identities=12% Similarity=0.076 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHHHHc---C-CCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhH
Q 017743 100 RNVDQVNALFKELHES---I-LAPDIY-TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174 (366)
Q Consensus 100 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 174 (366)
.+.++..+++.+++.. | ..++.. .|..++-+....|+.+-|...++++...- +-+..+-..-.-.+-..|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 4456666666665542 2 222222 23334444455556666666666555442 2222222222222334555666
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 017743 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (366)
|+++++.+++.. +.|..++-.-+-..-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 666666665543 223444443344444445555555555554443 244555666666666666666666666666555
Q ss_pred CCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHhhh
Q 017743 255 LGKDMKVSTLNAMLEAYCMNG---LPTEADLLFENSHN 289 (366)
Q Consensus 255 ~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~ 289 (366)
..+. ++..+..+...+...| +.+-+.++|.+..+
T Consensus 183 ~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 183 IQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred cCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4322 3444444444433333 33445555555544
No 123
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=0.00035 Score=64.31 Aligned_cols=231 Identities=10% Similarity=0.125 Sum_probs=112.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhH-----HHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCC
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVY-----NALITAHLHTRDKAKALAKALGYFQKMKGMERCKP 84 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~-----~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 84 (366)
|+......+.++...+-..+-.++++++.- .|+.++- |.++-... ..+..+..++.+++...+ .|
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL---~~S~Fse~~nLQnLLiLtAi-----kad~trVm~YI~rLdnyD--a~ 1052 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVL---DNSVFSENRNLQNLLILTAI-----KADRTRVMEYINRLDNYD--AP 1052 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhc---CCcccccchhhhhhHHHHHh-----hcChHHHHHHHHHhccCC--ch
Confidence 455555667777777777777777777753 2332222 22221111 111233444444443211 12
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (366)
+ +...+..++-+++|+.+|+... .+..+.+.|+. .-+.++.|.++-+... .+.+|+.+..
T Consensus 1053 ~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlak 1112 (1666)
T KOG0985|consen 1053 D------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAK 1112 (1666)
T ss_pred h------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHH
Confidence 2 2233445555666666665432 12333333332 2234444444443321 3445666666
Q ss_pred HHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHH
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 244 (366)
+-.+.|...+|++-|-+. .|+..|.-++....+.|.+++..+.+.-..+....|.. =+.|+-+|++.+++.+
T Consensus 1113 AQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1113 AQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTE 1184 (1666)
T ss_pred HHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHH
Confidence 666666666665544332 24555666666666666666666666555554433432 2455556666666555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 017743 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285 (366)
Q Consensus 245 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 285 (366)
..+++ ..||......+..-|...|.++.|.-+|.
T Consensus 1185 lE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1185 LEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 44433 12344444444555555555554444443
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=0.00023 Score=54.93 Aligned_cols=187 Identities=10% Similarity=0.069 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHhcC--CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCHHHH
Q 017743 66 LAKALGYFQKMKGM--ER-CKPNIV-TYNILLRACAQARNVDQVNALFKELHESILAPDIY-TYNGVMDAYGKNGMIKEM 140 (366)
Q Consensus 66 ~~~a~~~~~~~~~~--~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a 140 (366)
.++.++++..+... .| ..++.. .|..++-+....|+.+.|...++.+...- |... .-..-.-.+-..|++++|
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhH
Confidence 44444444444321 22 345554 35566667778899999999999988763 3332 222222234457899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC
Q 017743 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220 (366)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 220 (366)
.++++.+.+.. +-|..++..=+-..-..|+.-+|++-+....+. +..|...|.-+...|...|+++.|.-.++++.-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 99999999886 446777776666777778888999888888876 6779999999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHhhcc---CcHHHHHHHHHHHHhCCC
Q 017743 221 KYTPSFITYECIITMYGYC---DNVSRAREIFDELSKLGK 257 (366)
Q Consensus 221 ~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~ 257 (366)
. |.++..+..+...+.-. .+...+.+.|.+..+.+.
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 4 44455555555554433 467788899998888754
No 125
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.50 E-value=0.00073 Score=60.39 Aligned_cols=207 Identities=12% Similarity=0.069 Sum_probs=120.3
Q ss_pred cccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC
Q 017743 6 WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85 (366)
Q Consensus 6 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 85 (366)
.+.-|+..|..+.-++...|+++.+.+.|++...-- .-..+.|..+-..+. ..|.-..|..+++.......-+++
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~s----aag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYS----AAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHH----HhccchHHHHHHHhhcccccCCCc
Confidence 455688999999999999999999999999876422 224455655555554 334466777777766543222334
Q ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHc--CC--CCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHH
Q 017743 86 IVTYNILLRACAQ-ARNVDQVNALFKELHES--IL--APDIYTYNGVMDAYGKN-----------GMIKEMESVLSRMKS 149 (366)
Q Consensus 86 ~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~ 149 (366)
...+-..-..|.+ .+..+++..+-.++... +. ......|..+.-+|... ....++++.+++..+
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 4444444444443 35566666665555541 10 11223333333333221 123456666666666
Q ss_pred CCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Q 017743 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218 (366)
Q Consensus 150 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 218 (366)
.+.. |..+...+.--|...++.+.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+...
T Consensus 473 ~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 473 FDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred cCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 5432 2222222333455667777777777777776556667777777666666777777766665543
No 126
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.49 E-value=0.00011 Score=65.14 Aligned_cols=170 Identities=14% Similarity=0.182 Sum_probs=105.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 017743 92 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171 (366)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (366)
.+.+......+.+|+.+++.+.... .-..-|-.+...|...|+++.|.++|.+.- .++-.|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 3455566777888888888777653 223345666778888888888888886532 24556778888888
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 017743 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251 (366)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 251 (366)
|..|.++-.+.. |.......|-+-..-+-+.|++.+|++++-.+. .|+. .|.+|-+.|..+..+++.+.
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 888888876653 244445556665666667777777777665443 3432 34556666666666655544
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 017743 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286 (366)
Q Consensus 252 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (366)
-... .-..+...+..-+-..|++..|..-|-+
T Consensus 876 ~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 876 HHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hChh---hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 3221 1123444455555556666666555443
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=0.00019 Score=60.63 Aligned_cols=154 Identities=14% Similarity=0.039 Sum_probs=91.6
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCcHHH
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYCDNVSR 244 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 244 (366)
+...|+++.|+..++.++.. .+.|+..+......+.+.++..+|.+.++++... .|+ ....-.+..++.+.|++++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 44556667777777766554 3345555556666666777777777777776665 343 4455556666677777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 245 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
|..+++......+. |+..|..|.++|...|+..++.....+ .+...|+++.|...+....+
T Consensus 393 ai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 77777766665444 666777777777777766665544332 33445666666666666554
Q ss_pred CC--CCCChhHHHHHHHHh
Q 017743 325 NG--IVPNKRFFLEALETF 341 (366)
Q Consensus 325 ~g--~~~~~~~~~~ll~~~ 341 (366)
.. -.|+..-+...|...
T Consensus 454 ~~~~~~~~~aR~dari~~~ 472 (484)
T COG4783 454 QVKLGFPDWARADARIDQL 472 (484)
T ss_pred hccCCcHHHHHHHHHHHHH
Confidence 41 234444444444433
No 128
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.48 E-value=2.9e-07 Score=48.81 Aligned_cols=35 Identities=37% Similarity=0.510 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDP 46 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~ 46 (366)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999974
No 129
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.46 E-value=3.7e-07 Score=48.00 Aligned_cols=33 Identities=33% Similarity=0.644 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP 44 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p 44 (366)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999987
No 130
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=9.2e-05 Score=66.47 Aligned_cols=242 Identities=14% Similarity=0.140 Sum_probs=146.4
Q ss_pred ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------
Q 017743 45 DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI-------- 116 (366)
Q Consensus 45 ~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------- 116 (366)
|..|-..+++.-... ..|.++.|.+..+-++ +...|..|.+.|.+..+++-|.-.+-.|....
T Consensus 725 d~~TRkaml~FSfyv--tiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYV--TIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred CHHHHHhhhceeEEE--EeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 555555555432111 3345777777766655 44578888888888888777766665554210
Q ss_pred -CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHH
Q 017743 117 -LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195 (366)
Q Consensus 117 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 195 (366)
..|+ .+-....-.....|.+++|..+|.+-+.. ..|=..|-..|.|++|.++-+.--. +. =..||.
T Consensus 796 ~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy 862 (1416)
T KOG3617|consen 796 QQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYY 862 (1416)
T ss_pred HhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHH
Confidence 1121 22222233345667788888888776543 2333455667777777776543211 11 123444
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHh----------C---------CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 017743 196 SMIINYGKARLQGKAEYVFQKMTA----------M---------KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 196 ~li~~~~~~~~~~~a~~~~~~~~~----------~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
.....+...++.+.|++.|++... . ....|...|......+...|+.+.|+.+|....+
T Consensus 863 ~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-- 940 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-- 940 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--
Confidence 455555556666666666654211 1 0123445566666666778888888888866543
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 257 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
|-+++...|-.|+.++|.++.++- -|......+.+.|-..|++.+|..+|.+.+
T Consensus 941 -------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 -------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred -------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 455667777788888888877652 366667778888888888888888887754
No 131
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.41 E-value=1e-05 Score=68.73 Aligned_cols=124 Identities=17% Similarity=0.150 Sum_probs=98.4
Q ss_pred CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHH
Q 017743 221 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKL--GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298 (366)
Q Consensus 221 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 298 (366)
+.+.+......++..+....+++.+..++-..... ....-..+..++|+.|...|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33566777888888888888888888888877765 2222344556888999999999999999888888899999999
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 017743 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344 (366)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 344 (366)
++.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999988888777777777777777776665
No 132
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.38 E-value=0.0017 Score=59.14 Aligned_cols=228 Identities=12% Similarity=0.121 Sum_probs=152.7
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcC
Q 017743 21 MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR 100 (366)
Q Consensus 21 ~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 100 (366)
....+++.+|....+++.+. .|+. .|..++.++... +.|..++|..+++...... ..|..|...+-.+|...+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~--r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLF--RLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHH--HhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHh
Confidence 45678999999999998775 3444 456666666543 5577889998888876532 337889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------
Q 017743 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ---------- 170 (366)
Q Consensus 101 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------- 170 (366)
+.++|..+|++.... .|+..-...+..+|.+.+++.+-.+.--++.+. .+.+...+=.+++.+....
T Consensus 92 ~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 92 KLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred hhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccch
Confidence 999999999998875 577777888888999988887655554444443 2334444444554443321
Q ss_pred ChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCcHhHHHHHHHH-HHhCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 017743 171 AFDKMEQVFKSLMHSK-EKPTLPTFNSMIINYGKARLQGKAEYVFQK-MTAMKYTPSFITYECIITMYGYCDNVSRAREI 248 (366)
Q Consensus 171 ~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 248 (366)
-..-|.+.++.+.+.+ ..-+..-...-...+...|.+++|.+++.. .-+.-..-+...-+.-+..+...+++.+..++
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 1234566666666654 211222222223334567889999999843 33333334445556677778888999999999
Q ss_pred HHHHHhCCCC
Q 017743 249 FDELSKLGKD 258 (366)
Q Consensus 249 ~~~~~~~~~~ 258 (366)
-.++...+..
T Consensus 249 ~~~Ll~k~~D 258 (932)
T KOG2053|consen 249 SSRLLEKGND 258 (932)
T ss_pred HHHHHHhCCc
Confidence 9888888654
No 133
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.37 E-value=7.6e-07 Score=47.16 Aligned_cols=33 Identities=36% Similarity=0.489 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCC
Q 017743 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330 (366)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~ 330 (366)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555555554
No 134
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.36 E-value=8.5e-07 Score=46.60 Aligned_cols=32 Identities=31% Similarity=0.557 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhCCCCC
Q 017743 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 329 (366)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~ 329 (366)
+|+.++.+|.+.|+++.|..+|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55666666666666666666666666655554
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.35 E-value=3e-05 Score=65.65 Aligned_cols=120 Identities=14% Similarity=0.077 Sum_probs=56.4
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 241 (366)
++..+...++++.|..+|+++.+.. |+. ...++..+...++..+|.+++++..... +-+......-...+...++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3333444455555555555554432 222 2234444444444455555555544332 2234444444444555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
.+.|..+.+++.+..+. +..+|..|..+|...|+++.|+..++.+
T Consensus 250 ~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 55555555555554322 3445555555555555555555555443
No 136
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.35 E-value=0.0014 Score=56.41 Aligned_cols=128 Identities=16% Similarity=0.090 Sum_probs=75.5
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 017743 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTP-SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272 (366)
Q Consensus 194 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 272 (366)
|...+..-.+..-...|..+|.+..+.+..+ +..++++++..+| .++...|.++|+--.++- .-++.-....+..+.
T Consensus 369 ~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 369 YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLS 446 (656)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHH
Confidence 4444455555556666666676666665555 4556666666665 455566667766544431 113344455566666
Q ss_pred hcCChhHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 273 MNGLPTEADLLFENSHNMGVTPD--SSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
..|+-..+..+|++....++.|+ ...|..++..=+.-|+...+.++-+++.
T Consensus 447 ~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 447 HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 66666667777777666644444 3566666666666666666666655543
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.34 E-value=3.1e-05 Score=65.55 Aligned_cols=127 Identities=13% Similarity=0.067 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017743 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271 (366)
Q Consensus 192 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 271 (366)
.....++..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|.+++.+..+..+. +......-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344556777777899999999999999874 55 4455778887888899999999999876544 677788888889
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.+.++++.|+.+.+++.+.. +-+..+|..|..+|...|+++.|+-.++.+--
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999999864 22567999999999999999999999987753
No 138
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.34 E-value=0.0013 Score=59.77 Aligned_cols=222 Identities=18% Similarity=0.102 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLR--ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 139 (366)
..+++.+|+....++.+. .||... ...+. ...+.|+.++|..+++.....+.. |..|...+-.+|...++.++
T Consensus 21 d~~qfkkal~~~~kllkk---~Pn~~~-a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK---HPNALY-AKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHH---CCCcHH-HHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 455688888888887764 344432 22223 356889999999888887766544 88899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----------cHhH
Q 017743 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR----------LQGK 209 (366)
Q Consensus 140 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----------~~~~ 209 (366)
|..+|+...+. .|+......+..+|.+.+.+.+-.+.--++-+. .+.+...+-++++...+.. -..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999999876 567777888888888888876554444444332 3334444444555444321 1234
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHhhccCcHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 210 AEYVFQKMTAMKYTP-SFITYECIITMYGYCDNVSRAREIFD-ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 210 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
|.+.++.+.+.+-+. +..-...-...+...|++++|+.++. ...+.-...+...-+.-+..+...+++.+..++..++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 566666666554121 12222222334456788999999984 4444434445566667778888889999999988888
Q ss_pred hhCC
Q 017743 288 HNMG 291 (366)
Q Consensus 288 ~~~~ 291 (366)
...|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 8876
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.33 E-value=8.1e-05 Score=54.44 Aligned_cols=124 Identities=10% Similarity=0.025 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC---HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCH--HHHHHHH
Q 017743 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPS---FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV--STLNAML 268 (366)
Q Consensus 194 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li 268 (366)
|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......++. .....+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33333333 3556666666666666542 222 122333445556666667776666666665432221 2333455
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHH
Q 017743 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321 (366)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (366)
..+...|++++|+..++...... .....+....+.+.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666677777766665533222 2334455566666667777777666654
No 140
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.31 E-value=0.0011 Score=53.65 Aligned_cols=272 Identities=13% Similarity=0.081 Sum_probs=192.8
Q ss_pred CCHHHHHHH---HHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHH-HHHhhchHHHHHHHHHHHHHHHHhcCCCCC-
Q 017743 9 ADTGIYSKL---IAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI-TAHLHTRDKAKALAKALGYFQKMKGMERCK- 83 (366)
Q Consensus 9 ~~~~~~~~l---i~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~- 83 (366)
-|+..|.++ ...|...|+-..|+.=++..++. +||-..-..-- ..+. +.|.++.|..-|+.........
T Consensus 67 ~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll----K~Gele~A~~DF~~vl~~~~s~~ 140 (504)
T KOG0624|consen 67 GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL----KQGELEQAEADFDQVLQHEPSNG 140 (504)
T ss_pred CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh----hcccHHHHHHHHHHHHhcCCCcc
Confidence 344455444 35677888888899888888875 67654322111 1122 6677999999999988642100
Q ss_pred CCHHH------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 017743 84 PNIVT------------YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 151 (366)
Q Consensus 84 ~~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 151 (366)
.+... ....+..+...|+...|+.....+++.. +.|...+..-..+|...|.+..|+.=++...+..
T Consensus 141 ~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs 219 (504)
T KOG0624|consen 141 LVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS 219 (504)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Confidence 01111 2234455667899999999999998863 5688888888999999999999998888877654
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHH-------------HHHHHhcCcHhHHHHHHHHHH
Q 017743 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM-------------IINYGKARLQGKAEYVFQKMT 218 (366)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------i~~~~~~~~~~~a~~~~~~~~ 218 (366)
..+..++..+-..+...|+.+.++...++.++ ..||...+... +......+++.++.+-.+...
T Consensus 220 -~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vl 296 (504)
T KOG0624|consen 220 -QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVL 296 (504)
T ss_pred -ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34677777778888899999999999999987 45554432211 122344577777877777777
Q ss_pred hCCCCCCH---HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 017743 219 AMKYTPSF---ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291 (366)
Q Consensus 219 ~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (366)
+....... ..+..+-.++...+++.+|++...+..+.... |+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 297 k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 297 KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 66422122 23456667778889999999999999886433 58888888889999999999999999888764
No 141
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.28 E-value=1.9e-05 Score=67.15 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESI--LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 160 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (366)
+.+......+++.+....+++.+..++.+..... ...-..|..++++.|.+.|..++++.++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 3445555556666666666666666666665541 21223344566666666666666666666666666666666667
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 017743 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203 (366)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 203 (366)
.+|+.+.+.|++..|.++...|...+...+..++...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666666655555555555544444443
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.23 E-value=0.00024 Score=51.96 Aligned_cols=125 Identities=10% Similarity=0.047 Sum_probs=70.2
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 017743 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT--LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS--FITYECIIT 234 (366)
Q Consensus 159 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 234 (366)
|..++..+ ..++...+...++.+........ ....-.+...+...|++++|...|+.+......|+ ......+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33344433 35666666666666666422211 12233344556666777777777777766542222 123344556
Q ss_pred HhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 017743 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286 (366)
Q Consensus 235 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (366)
.+...|++++|+..++...... .....+......+...|++++|...|+.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666777777777775543322 2344556666677777777777777665
No 143
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.23 E-value=0.00067 Score=60.53 Aligned_cols=167 Identities=16% Similarity=0.175 Sum_probs=100.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcH
Q 017743 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207 (366)
Q Consensus 128 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 207 (366)
+.+......|.+|+.+++.+..... -..-|..+.+.|...|+++.|.++|-+. ..++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 3444556677777777777766532 3445667777888888888888877654 1245567778888888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 208 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
+.|.++-.+... ...+...|-.-..-+-+.|++.+|.+++-.+-. |+ ..|..|-+.|..+..+++..+-
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 888777665542 234445566656666677777777776643321 22 3456677777777777776653
Q ss_pred hhCCCCCCHHHHHHHHHHHHhhchHHHHHHHH
Q 017743 288 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319 (366)
Q Consensus 288 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (366)
.... -..|...+..-+...|+...|..-|
T Consensus 877 h~d~---l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 877 HGDH---LHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred Chhh---hhHHHHHHHHHHHhccChhHHHHHH
Confidence 2211 1234444444444455555544443
No 144
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.0028 Score=55.11 Aligned_cols=127 Identities=19% Similarity=0.145 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHH--------HHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC------C
Q 017743 191 LPTFNSMIINYGKARLQGKAEYVFQ--------KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL------G 256 (366)
Q Consensus 191 ~~~~~~li~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 256 (366)
..+.-.+++.....|+++.|.+++. .+.+.+..|. +...++..+.+.++-+.|..++...... +
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~ 453 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTG 453 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhccc
Confidence 3344556666778888888888888 4555444444 4455566666666666666666665432 1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHH
Q 017743 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321 (366)
Q Consensus 257 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (366)
-..-..++..+...-.+.|+-++|..+++++.+.. ++|..+...++.+|++.. .+.|..+-+.
T Consensus 454 s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~~l~k~ 516 (652)
T KOG2376|consen 454 SIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAESLSKK 516 (652)
T ss_pred chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHHHHhhc
Confidence 01112233334444556799999999999999875 568999999999998753 5556555443
No 145
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.22 E-value=4.2e-05 Score=51.11 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=48.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHhhc--------hHHHHHHHHHHHHhCCCCCChhHHHHH
Q 017743 267 MLEAYCMNGLPTEADLLFENSHNMGV-TPDSSTYKLLYKAYTKAN--------MKELVQKLLKRMEQNGIVPNKRFFLEA 337 (366)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~m~~~g~~~~~~~~~~l 337 (366)
.|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+.. +.-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444445666666666666666666 666666666666654422 344566677777777777777777777
Q ss_pred HHHhhc
Q 017743 338 LETFSS 343 (366)
Q Consensus 338 l~~~~~ 343 (366)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 766654
No 146
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.17 E-value=0.00011 Score=60.02 Aligned_cols=144 Identities=19% Similarity=0.165 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM-YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 271 (366)
+|..++....+.+..+.|..+|.+..+.+ ..+..+|...... +...++.+.|.++|+...+. ...+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555666666666666666666666432 2223333333332 12234555566666666655 233566666666666
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 017743 272 CMNGLPTEADLLFENSHNMGVTPDS---STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341 (366)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 341 (366)
...|+.+.|..+|++.... +.++. ..|...++.=.+.|+.+.+.++.+++.+ ..|+...+..++.-|
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDRY 150 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHHh
Confidence 6666666676666666654 22222 3666666666666777766666666665 334444444444443
No 147
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.14 E-value=7.8e-05 Score=49.85 Aligned_cols=76 Identities=11% Similarity=0.089 Sum_probs=39.6
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHhhccC--------cHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 017743 197 MIINYGKARLQGKAEYVFQKMTAMKY-TPSFITYECIITMYGYCD--------NVSRAREIFDELSKLGKDMKVSTLNAM 267 (366)
Q Consensus 197 li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 267 (366)
.|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444666666666666666665 556666666665554332 223344455555555555555555555
Q ss_pred HHHHH
Q 017743 268 LEAYC 272 (366)
Q Consensus 268 i~~~~ 272 (366)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 54443
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.13 E-value=3.6e-06 Score=43.02 Aligned_cols=31 Identities=39% Similarity=0.474 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGC 42 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~ 42 (366)
.+|++++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3799999999999999999999999998764
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.07 E-value=0.00014 Score=48.41 Aligned_cols=93 Identities=18% Similarity=0.168 Sum_probs=52.2
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhh
Q 017743 230 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309 (366)
Q Consensus 230 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 309 (366)
..+...+...|++++|...++...+.... +...+..+...+...|++++|.+.++...... +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 33444455556666666666665554322 33455555566666666666666666655543 22334555666666666
Q ss_pred chHHHHHHHHHHHHh
Q 017743 310 NMKELVQKLLKRMEQ 324 (366)
Q Consensus 310 ~~~~~a~~~~~~m~~ 324 (366)
|+++.|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666666665544
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.07 E-value=0.00013 Score=48.66 Aligned_cols=92 Identities=17% Similarity=0.097 Sum_probs=50.7
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 017743 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275 (366)
Q Consensus 196 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 275 (366)
.+...+...|++++|...++...+.. +.+...+..+...+...+++++|.+.++........ +..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHH
Confidence 34444555566666666666555442 223344555555555566666666666665554322 3345555666666666
Q ss_pred ChhHHHHHHHHhhh
Q 017743 276 LPTEADLLFENSHN 289 (366)
Q Consensus 276 ~~~~a~~~~~~~~~ 289 (366)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666665544
No 151
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.0023 Score=54.99 Aligned_cols=213 Identities=12% Similarity=0.050 Sum_probs=154.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------H
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN-------L 161 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~ 161 (366)
...+.+...+..+++.|.+.+....... -+..-++....+|...|...++...-+...+.|.. ...-|+ .
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4567777888889999999999988874 35555677778888888888887777776666532 222222 2
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCCHHH-------------------------HHHHHHHHHhcCcHhHHHHHHHH
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT-------------------------FNSMIINYGKARLQGKAEYVFQK 216 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------------------~~~li~~~~~~~~~~~a~~~~~~ 216 (366)
+..+|.+.++++.++..|.+.+.....|+... ...-...+.+.|++..|...|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34466777888999988887765433333222 11123456788999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 017743 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296 (366)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 296 (366)
++... +-|...|..-.-+|.+.|.+..|+.-.+...+.++. ....|..=..++....++++|.+.|.+..+.+ |+.
T Consensus 384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~ 459 (539)
T KOG0548|consen 384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSN 459 (539)
T ss_pred HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chh
Confidence 99886 667889999999999999999999988888887543 45566666667777789999999999998865 555
Q ss_pred HHHHHHHHHHHh
Q 017743 297 STYKLLYKAYTK 308 (366)
Q Consensus 297 ~~~~~l~~~~~~ 308 (366)
.-+.--++-|..
T Consensus 460 ~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 460 AEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHH
Confidence 544444444444
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.04 E-value=1.5e-05 Score=52.10 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=48.0
Q ss_pred cCcHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHH
Q 017743 239 CDNVSRAREIFDELSKLGKD-MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317 (366)
Q Consensus 239 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 317 (366)
.|+++.|..+++.+.+.... ++...+..+..++.+.|++++|..+++. .+.+. .+......+.++|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35677777777777665432 2344455567777777777777777766 32221 123444455667777777777777
Q ss_pred HHHH
Q 017743 318 LLKR 321 (366)
Q Consensus 318 ~~~~ 321 (366)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7664
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.04 E-value=0.00018 Score=61.03 Aligned_cols=102 Identities=11% Similarity=-0.046 Sum_probs=82.6
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 017743 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277 (366)
Q Consensus 198 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 277 (366)
...+...|+++.|+..|.+.++.. +.+...|..+..++...|++++|...++.+...... +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 455677899999999999998875 456778888888999999999999999999887654 677888889999999999
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHH
Q 017743 278 TEADLLFENSHNMGVTPDSSTYKLLY 303 (366)
Q Consensus 278 ~~a~~~~~~~~~~~~~p~~~~~~~l~ 303 (366)
++|...|++..+.+ |+.......+
T Consensus 87 ~eA~~~~~~al~l~--P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASLA--PGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 99999999988754 5544444443
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.03 E-value=0.00042 Score=48.64 Aligned_cols=22 Identities=9% Similarity=0.034 Sum_probs=9.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 017743 92 LLRACAQARNVDQVNALFKELH 113 (366)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~ 113 (366)
+...+.+.|++++|.+.|..+.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~ 29 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFL 29 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333444444444444444443
No 155
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.03 E-value=8.3e-06 Score=41.65 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhCC
Q 017743 298 TYKLLYKAYTKANMKELVQKLLKRMEQNG 326 (366)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 326 (366)
+|+.++++|.+.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 156
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.02 E-value=0.0042 Score=49.65 Aligned_cols=177 Identities=13% Similarity=0.049 Sum_probs=94.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 017743 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF---NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203 (366)
Q Consensus 127 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 203 (366)
....+...|++++|.+.|+++......+ .... -.++.++.+.++++.|...++++.+..+.....-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3444455667777777777766542221 1111 23455666777777777777777664332222222222222221
Q ss_pred --c---------------Cc---HhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHH
Q 017743 204 --A---------------RL---QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 263 (366)
Q Consensus 204 --~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 263 (366)
. .+ ...|...|+.++ .-|-...-..+|...+..+... -...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHH----HHHH
Confidence 0 01 122333333333 3333333344555444444332 0111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 264 LNAMLEAYCMNGLPTEADLLFENSHNM--GVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
--.+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 224566688888888888888888765 223345666778888888888888887766554
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.01 E-value=0.0005 Score=48.22 Aligned_cols=100 Identities=11% Similarity=0.044 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC--CCHHHHHHH
Q 017743 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK--PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK--PTLPTFNSM 197 (366)
Q Consensus 122 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 197 (366)
.++..+...+.+.|++++|.+.|..+.+.... .....+..+..++.+.|+++.|...|+.+...... .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34566677777788888888888888765321 11345666777788888888888888887764322 124556667
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 198 IINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 198 i~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
..++.+.|++++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 777778888888888888887764
No 158
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.01 E-value=0.00065 Score=49.08 Aligned_cols=89 Identities=13% Similarity=-0.012 Sum_probs=41.6
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 017743 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277 (366)
Q Consensus 198 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 277 (366)
...+...|++++|..+|+.+.... +-+..-|-.|.-++-..|++.+|+..|......++. ++..+-.+..++...|+.
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCH
Confidence 333444455555555555444432 223334444444444455555555555554444432 444444444555555555
Q ss_pred hHHHHHHHHhh
Q 017743 278 TEADLLFENSH 288 (366)
Q Consensus 278 ~~a~~~~~~~~ 288 (366)
+.|.+.|+..+
T Consensus 120 ~~A~~aF~~Ai 130 (157)
T PRK15363 120 CYAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.99 E-value=0.00035 Score=59.34 Aligned_cols=94 Identities=9% Similarity=-0.058 Sum_probs=75.3
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 241 (366)
-...+...|+++.|++.|++.+.... .+...|..+..+|...|++++|...+++.+... +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 34556778899999999999887633 367778888888888999999999998888765 4456778888888888999
Q ss_pred HHHHHHHHHHHHhCCC
Q 017743 242 VSRAREIFDELSKLGK 257 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~ 257 (366)
+++|...|+...+.++
T Consensus 86 ~~eA~~~~~~al~l~P 101 (356)
T PLN03088 86 YQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999988887653
No 160
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.97 E-value=0.00018 Score=56.97 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=55.6
Q ss_pred HHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 017743 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280 (366)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 280 (366)
+.+.+++.+|+..|.+.++.. +-|.+-|..-..+|++.|.++.|++-.+.....+.. ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 345566666666666666553 334555555566666666666666666665554433 345566666666666666666
Q ss_pred HHHHHHhhhCCCCCCHHHHH
Q 017743 281 DLLFENSHNMGVTPDSSTYK 300 (366)
Q Consensus 281 ~~~~~~~~~~~~~p~~~~~~ 300 (366)
++.|++.++ +.|+-.+|.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHhhhc--cCCCcHHHH
Confidence 666666555 345544443
No 161
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.97 E-value=0.0011 Score=47.93 Aligned_cols=87 Identities=11% Similarity=0.003 Sum_probs=44.5
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHH
Q 017743 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315 (366)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 315 (366)
+...|++++|.++|+.+....+. +..-|-.|.-++-..|++++|+..|......++ -|+..+-.+..++...|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 34455555555555555544333 444445555555555555555555555554442 2445555555555555555555
Q ss_pred HHHHHHHHh
Q 017743 316 QKLLKRMEQ 324 (366)
Q Consensus 316 ~~~~~~m~~ 324 (366)
.+.|+..+.
T Consensus 123 ~~aF~~Ai~ 131 (157)
T PRK15363 123 IKALKAVVR 131 (157)
T ss_pred HHHHHHHHH
Confidence 555554443
No 162
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.95 E-value=0.0056 Score=52.85 Aligned_cols=149 Identities=11% Similarity=0.056 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCcHhHHHHHHH
Q 017743 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP-TLPTFNSMIINYGKARLQGKAEYVFQ 215 (366)
Q Consensus 137 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 215 (366)
.+.....++++......--.-+|..++....+..-...|..+|.+..+.+..+ .+...++++..++ .++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44444555554433222223344555555555555666666666665554444 4445555555444 345555666665
Q ss_pred HHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 216 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
--.+.- ..++.-....+..+...++-..+..+|++....+..| ....|..++..-..-|++..+.++-+++
T Consensus 426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 544331 2223333444455555555556666666665553332 2355666666656666666655555444
No 163
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.95 E-value=0.0051 Score=57.01 Aligned_cols=182 Identities=13% Similarity=0.043 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 017743 66 LAKALGYFQKMKGMERCKPN-IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144 (366)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 144 (366)
...|+..|-+..+. .++ ...|..|...|....+...|.+.|+...+.+ ..+..........|++..+++.|..+.
T Consensus 474 ~~~al~ali~alrl---d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 474 SALALHALIRALRL---DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 55666666555432 333 4578889999998889999999999988764 336677888889999999999999884
Q ss_pred HHHHHCCC-CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCC
Q 017743 145 SRMKSNQC-KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 223 (366)
Q Consensus 145 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 223 (366)
-...+... ..-...|....-.|...++...++.-|+...... +.|...|..+.++|...|++..|.++|.+.... .
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 33332210 1112223334555778889999999999887753 347889999999999999999999999888775 3
Q ss_pred CCH-HHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 017743 224 PSF-ITYECIITMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 224 ~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (366)
|+. ..--...-.-+..|++.+|...+..+..
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 432 2111222234567888888888877654
No 164
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.95 E-value=0.00045 Score=52.39 Aligned_cols=87 Identities=21% Similarity=0.331 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----------------CHHHHH
Q 017743 83 KPNIVTYNILLRACAQ-----ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG----------------MIKEME 141 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a~ 141 (366)
..+..+|..+++.|.+ .|..+-....+..|.+-|+.-|..+|+.|+..+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4567777777777764 3667777788888888888888888888888765421 123345
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 017743 142 SVLSRMKSNQCKPDIITFNLLIDSYGKR 169 (366)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (366)
+++++|...|+-||..++..+++.+++.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 5555555555555555555555554443
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.92 E-value=0.0012 Score=49.93 Aligned_cols=91 Identities=12% Similarity=0.040 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPD--IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (366)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 455677888888889999999999999887543222 3577888888899999999999999888763 2245666667
Q ss_pred HHHHhccCChhHHH
Q 017743 163 IDSYGKRQAFDKME 176 (366)
Q Consensus 163 ~~~~~~~~~~~~a~ 176 (366)
..++...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77777776654444
No 166
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.90 E-value=0.021 Score=53.26 Aligned_cols=184 Identities=13% Similarity=0.032 Sum_probs=127.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHH
Q 017743 100 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 179 (366)
Q Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 179 (366)
++...|+..|-+..+.... =...|..|...|+...+...|.+.|+...+... -+........+.|....+++.|..+.
T Consensus 472 K~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHH
Confidence 3466677776666554321 245688888888888888899999998877642 26677788889999999999998883
Q ss_pred HHHHhcCC-CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC
Q 017743 180 KSLMHSKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 258 (366)
Q Consensus 180 ~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 258 (366)
-..-+... .....-|....-.|...++...+..-|+...+.. +.|...|..+.++|.++|++..|.++|.+....++.
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 33222110 0111223333445667788889999898888765 557789999999999999999999999888876533
Q ss_pred CCHHHHHHH--HHHHHhcCChhHHHHHHHHhhh
Q 017743 259 MKVSTLNAM--LEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 259 ~~~~~~~~l--i~~~~~~g~~~~a~~~~~~~~~ 289 (366)
..|... .-.-+..|.+.+|...+.....
T Consensus 629 ---s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 629 ---SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred ---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 223222 2234567888888888776653
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.90 E-value=0.0014 Score=49.54 Aligned_cols=61 Identities=11% Similarity=0.051 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 017743 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD--IITFNLLIDSYGKRQAFDKMEQVFKSLMH 184 (366)
Q Consensus 124 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (366)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++...
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444455555555555555443321111 23344444444444555555554444444
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.90 E-value=0.00069 Score=55.51 Aligned_cols=129 Identities=12% Similarity=0.063 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 017743 88 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA-YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (366)
+|..+++..-+.+..+.|.++|.+.++.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 44555555555555555555555555322 1122223222222 11133444455555555443 333445555555555
Q ss_pred hccCChhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCcHhHHHHHHHHHHh
Q 017743 167 GKRQAFDKMEQVFKSLMHSKEKPTL---PTFNSMIINYGKARLQGKAEYVFQKMTA 219 (366)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~ 219 (366)
.+.++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555443 21111 2445555444455555555555554444
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.87 E-value=4.4e-05 Score=49.83 Aligned_cols=20 Identities=20% Similarity=0.077 Sum_probs=8.0
Q ss_pred HHHHHHhcCcHhHHHHHHHH
Q 017743 197 MIINYGKARLQGKAEYVFQK 216 (366)
Q Consensus 197 li~~~~~~~~~~~a~~~~~~ 216 (366)
+..++.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33334444444444444433
No 170
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.87 E-value=0.00047 Score=52.28 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHhc-----CcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHH
Q 017743 188 KPTLPTFNSMIINYGKA-----RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262 (366)
Q Consensus 188 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 262 (366)
..+-.+|..++..|.+. |..+-....++.|.+.|+.-|..+|+.|++.+=+ |.+- | ..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p-~n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------P-RN 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------c-cc
Confidence 34677777777777643 5666666677777777877788888887777654 3321 1 11
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhch
Q 017743 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311 (366)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 311 (366)
.+.++...|- .+-+-|++++++|...|+-||..|+..+++.|.+.+.
T Consensus 107 ~fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111111111 2345578888888888888888888888888866543
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.79 E-value=0.0038 Score=55.67 Aligned_cols=142 Identities=11% Similarity=0.039 Sum_probs=98.9
Q ss_pred CCCCHHHHHHHHHHHHhc-----CcHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhcc--------CcHHHHHHHHHHH
Q 017743 187 EKPTLPTFNSMIINYGKA-----RLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYC--------DNVSRAREIFDEL 252 (366)
Q Consensus 187 ~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~~ 252 (366)
.+.+...|...+.+.... +....|..+|++..+. .|+ ...|..+..++... .++..+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 456778888888875432 3467899999999987 455 44555444433221 1233444444443
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCCh
Q 017743 253 SKL-GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331 (366)
Q Consensus 253 ~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 331 (366)
... ....+...|.++.-.....|++++|...+++....+ |+...|..+...+...|+.++|...+++... +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 332 123356778877777777899999999999999865 6888999999999999999999999999887 44554
Q ss_pred hHH
Q 017743 332 RFF 334 (366)
Q Consensus 332 ~~~ 334 (366)
.+|
T Consensus 487 pt~ 489 (517)
T PRK10153 487 NTL 489 (517)
T ss_pred chH
Confidence 444
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.79 E-value=0.0009 Score=50.33 Aligned_cols=61 Identities=10% Similarity=-0.051 Sum_probs=27.3
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCcHhHHHHHHHHHHh
Q 017743 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP--TLPTFNSMIINYGKARLQGKAEYVFQKMTA 219 (366)
Q Consensus 159 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 219 (366)
+..+...+...|++++|...|++.......+ ...++..+...+...|++++|...++....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444455555555555544321111 122444444445555555555555554443
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.78 E-value=0.0025 Score=52.41 Aligned_cols=212 Identities=13% Similarity=0.165 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI 91 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 91 (366)
..|......|...|++++|.+.|.+......+.+.. + .....+..|-.++.+... .--...|..
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~-~-----------~Aa~~~~~Aa~~~k~~~~----~~Ai~~~~~ 99 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK-F-----------EAAKAYEEAANCYKKGDP----DEAIECYEK 99 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H-H-----------HHHHHHHHHHHHHHHTTH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH-H-----------HHHHHHHHHHHHHHhhCH----HHHHHHHHH
Confidence 456667777777777777777777664321110000 0 011123334444443310 111234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHH
Q 017743 92 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN-GMIKEMESVLSRMKSN----QCK-PDIITFNLLIDS 165 (366)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~ 165 (366)
.+..|...|++..|-+++..+ ...|... |++++|++.|.+..+. +.+ .-..++..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 566666677766666655554 3344455 7788888887776432 211 113455667778
Q ss_pred HhccCChhHHHHHHHHHHhcCCCC-----CHH-HHHHHHHHHHhcCcHhHHHHHHHHHHhCC--CCCC--HHHHHHHHHH
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKP-----TLP-TFNSMIINYGKARLQGKAEYVFQKMTAMK--YTPS--FITYECIITM 235 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~ 235 (366)
+.+.|++++|.++|+++....... +.. .+...+-++...||+..|...+++..... +..+ ......|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 888889999999998887643221 221 23344446667788888888888887552 2222 3466777777
Q ss_pred hhcc--CcHHHHHHHHHHHHh
Q 017743 236 YGYC--DNVSRAREIFDELSK 254 (366)
Q Consensus 236 ~~~~--~~~~~a~~~~~~~~~ 254 (366)
+-.. ..++.+..-|+.+.+
T Consensus 245 ~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHTT-CCCHHHHCHHHTTSS-
T ss_pred HHhCCHHHHHHHHHHHcccCc
Confidence 7532 345666666655543
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.77 E-value=0.00071 Score=50.91 Aligned_cols=81 Identities=11% Similarity=-0.052 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC--CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017743 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP--SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268 (366)
Q Consensus 191 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 268 (366)
...+..+...+...|++++|...+++.......+ ...++..+..++...|++++|...++........ ....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 3444555555666667777777666665442121 1235566666666666666666666666654322 234444444
Q ss_pred HHHH
Q 017743 269 EAYC 272 (366)
Q Consensus 269 ~~~~ 272 (366)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.72 E-value=0.0093 Score=53.28 Aligned_cols=141 Identities=13% Similarity=0.015 Sum_probs=89.7
Q ss_pred cccCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHhcCCCCChh-hHHHHHHHHhhc----hHHHHHHHHHHHHHHH
Q 017743 6 WYIADTGIYSKLIAVMGKKG-----QTRLAMWLFSEMRNSGCRPDPS-VYNALITAHLHT----RDKAKALAKALGYFQK 75 (366)
Q Consensus 6 ~~~~~~~~~~~li~~~~~~~-----~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~~~~~----~~~~~~~~~a~~~~~~ 75 (366)
..+.|..+|...+++..... ...+|..+|++..+. .|+.. .|..+..++... ......+..+.+...+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 44567788888887755432 377899999998876 56543 333322222111 0112334555555555
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 017743 76 MKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150 (366)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 150 (366)
.......+.+...|..+.-.....|++++|...+++..... |+...|..+...+...|+.++|.+.+++....
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33321234455667777666667788888888888888764 57777888888888888888888888877665
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.71 E-value=0.0034 Score=51.66 Aligned_cols=138 Identities=14% Similarity=0.136 Sum_probs=80.2
Q ss_pred cHhHHHHHHHHHHh----CCCCCC--HHHHHHHHHHhhcc-CcHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHh
Q 017743 206 LQGKAEYVFQKMTA----MKYTPS--FITYECIITMYGYC-DNVSRAREIFDELSKL----GK-DMKVSTLNAMLEAYCM 273 (366)
Q Consensus 206 ~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~ 273 (366)
++++|...+++... .| .|+ ...+..+...|... |+++.|.+.|+...+. +. ..-...+..+...+.+
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 66666666655432 23 232 23556666777777 8888888888876542 21 0113456677778888
Q ss_pred cCChhHHHHHHHHhhhCCC-----CCCHH-HHHHHHHHHHhhchHHHHHHHHHHHHhC--CCCCC--hhHHHHHHHHhhc
Q 017743 274 NGLPTEADLLFENSHNMGV-----TPDSS-TYKLLYKAYTKANMKELVQKLLKRMEQN--GIVPN--KRFFLEALETFSS 343 (366)
Q Consensus 274 ~g~~~~a~~~~~~~~~~~~-----~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~~~--~~~~~~ll~~~~~ 343 (366)
.|++++|.++|++...... +++.. .|...+-.+...|+...|.+.+++.... ++..+ ......+|+++-.
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 8888888888888765422 11222 2333444666778888888888888754 33333 3456666666654
Q ss_pred c
Q 017743 344 S 344 (366)
Q Consensus 344 ~ 344 (366)
.
T Consensus 248 ~ 248 (282)
T PF14938_consen 248 G 248 (282)
T ss_dssp T
T ss_pred C
Confidence 3
No 177
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.00087 Score=53.28 Aligned_cols=152 Identities=13% Similarity=0.098 Sum_probs=103.4
Q ss_pred HHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHH
Q 017743 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 243 (366)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 243 (366)
.-..+.+++.+|+..|.+.++. .+.|...|..-..+|.+.|.++.|++--+..+..+ +-...+|..|..+|...|++.
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 4477899999999999999986 33477888888999999999999999888888764 334679999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCChh---HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHH
Q 017743 244 RAREIFDELSKLGKDMKVSTLNAMLEAY-CMNGLPT---EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319 (366)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~---~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (366)
+|.+.|+...+. .|+-.+|-.=+... -+.+... .+..-++.....|..|+...... ...........+.
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~-----~~l~nnp~l~~~~ 239 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFN-----GDLMNNPQLMQLA 239 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhhc-----cccccCHHHHHHH
Confidence 999999998885 55655655433332 2233333 23333333333444444332111 2223334455556
Q ss_pred HHHHh
Q 017743 320 KRMEQ 324 (366)
Q Consensus 320 ~~m~~ 324 (366)
..|..
T Consensus 240 ~~m~~ 244 (304)
T KOG0553|consen 240 SQMMK 244 (304)
T ss_pred HHHhh
Confidence 66665
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.69 E-value=0.00027 Score=43.89 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=31.3
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
..|++++|..+|+.+....+. +...+..+..+|.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356666666666666655444 5555556666666666666666666666554
No 179
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0066 Score=48.66 Aligned_cols=102 Identities=13% Similarity=0.053 Sum_probs=75.1
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHhhhCCCCCCHHHH
Q 017743 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG---LPTEADLLFENSHNMGVTPDSSTY 299 (366)
Q Consensus 223 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~ 299 (366)
+-|...|..|...|...|+.+.|..-|....+...+ ++..+..+..++.... .-.++..+|+++...+. -|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHH
Confidence 556778888888888888888888888887776433 6666766666655433 34567788888877663 367777
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHhCC
Q 017743 300 KLLYKAYTKANMKELVQKLLKRMEQNG 326 (366)
Q Consensus 300 ~~l~~~~~~~~~~~~a~~~~~~m~~~g 326 (366)
..|...+...|++.+|...|+.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 778888888888888888888888753
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.62 E-value=0.0045 Score=43.10 Aligned_cols=90 Identities=8% Similarity=-0.065 Sum_probs=47.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhc
Q 017743 93 LRACAQARNVDQVNALFKELHESILAPD--IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK--PDIITFNLLIDSYGK 168 (366)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 168 (366)
..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++....... .+......+.-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3445556666666666666666654432 233444555566666666666666666544211 011222222334555
Q ss_pred cCChhHHHHHHHHH
Q 017743 169 RQAFDKMEQVFKSL 182 (366)
Q Consensus 169 ~~~~~~a~~~~~~~ 182 (366)
.|+.++|++.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 56666666665544
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.57 E-value=0.0085 Score=41.73 Aligned_cols=56 Identities=11% Similarity=0.034 Sum_probs=27.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 017743 129 DAYGKNGMIKEMESVLSRMKSNQCKPD--IITFNLLIDSYGKRQAFDKMEQVFKSLMH 184 (366)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (366)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++....
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555555544322 22333344445555555555555555544
No 182
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.55 E-value=0.00057 Score=41.96 Aligned_cols=55 Identities=16% Similarity=0.115 Sum_probs=26.7
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
..+...|++++|.+.|+.+.+... -+...+..+..++...|++++|..+|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555554431 1444445555555555555555555555543
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.55 E-value=0.00045 Score=42.90 Aligned_cols=64 Identities=22% Similarity=0.251 Sum_probs=52.6
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 017743 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338 (366)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 338 (366)
...|++++|+++|+.+...... +...+..+..+|.+.|++++|..+++++... .|+...+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4689999999999999887533 8888889999999999999999999999884 46655555554
No 184
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.54 E-value=0.029 Score=44.89 Aligned_cols=184 Identities=13% Similarity=0.059 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY---NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (366)
+...+-.....+...|++++|.+.|+.+...-.. +...- ..+..++.+.+++++|...+++..+........-+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3433444555667789999999999999886322 22222 4556788899999999999999987643322333333
Q ss_pred HHHHHhc--c---------------CC---hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 162 LIDSYGK--R---------------QA---FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 162 l~~~~~~--~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
.+.+.+. . .| ...|...|+.+++. -|+ ..-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH-
Confidence 3333221 1 11 23444555555553 222 22233444333333321
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 017743 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKL--GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288 (366)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (366)
.- ..--.+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+.
T Consensus 174 --la-~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 --LA-KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred --HH-HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 01 11124556677788888888888888765 223345566677788888888888887766543
No 185
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.53 E-value=0.013 Score=51.90 Aligned_cols=257 Identities=15% Similarity=0.106 Sum_probs=127.5
Q ss_pred cccCCHHHHHHHHHHHHhcCChhHHHHHH---------HHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 017743 6 WYIADTGIYSKLIAVMGKKGQTRLAMWLF---------SEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 76 (366)
Q Consensus 6 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~---------~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~ 76 (366)
.+.|....+.+-+..|...|.+++|.++- +.+... ..+.-.++..-.+|.+.++ -.+-+.+.-++++
T Consensus 551 ~i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRd--l~~L~li~EL~~~ 626 (1081)
T KOG1538|consen 551 SISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRD--LRYLELISELEER 626 (1081)
T ss_pred eeecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhc--cHHHHHHHHHHHH
Confidence 35566667777778888899988887642 111110 1122233334444443322 1233333344455
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHC
Q 017743 77 KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI-YTYN-----GVMDAYGKNGMIKEMESVLSRMKSN 150 (366)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~ 150 (366)
++ .|-.|+... +...|+-.|.+.+|.++|.+- |..... ..|+ -...-+...|..++-..+.++-.+.
T Consensus 627 k~-rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W 699 (1081)
T KOG1538|consen 627 KK-RGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW 699 (1081)
T ss_pred Hh-cCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Confidence 54 444566543 455667778888888887543 322000 0010 1122233334433333333322111
Q ss_pred --CC-CCCHHHHHHHHHHHhccCChhHHHHHHHH------HHhcC---CCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Q 017743 151 --QC-KPDIITFNLLIDSYGKRQAFDKMEQVFKS------LMHSK---EKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218 (366)
Q Consensus 151 --~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 218 (366)
.+ +| ......+...|+.++|..+.-+ +.+-+ -..+..+...+...+.+...+..|.++|..|-
T Consensus 700 Ar~~keP-----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g 774 (1081)
T KOG1538|consen 700 ARNIKEP-----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG 774 (1081)
T ss_pred hhhcCCc-----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhc
Confidence 01 11 1223344455655555544211 11111 12234455555555566667777777777765
Q ss_pred hCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCH-----------HHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV-----------STLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 219 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
.. ..+++.....++|++|..+-+...+. .|++ .-|...-.+|.+.|+-.+|..+++++
T Consensus 775 D~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 775 DL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred cH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 42 34667777888888888887776553 2221 12233334566666666666666665
Q ss_pred hh
Q 017743 288 HN 289 (366)
Q Consensus 288 ~~ 289 (366)
..
T Consensus 844 tn 845 (1081)
T KOG1538|consen 844 TN 845 (1081)
T ss_pred hh
Confidence 43
No 186
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.0095 Score=46.66 Aligned_cols=129 Identities=10% Similarity=-0.063 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHH-----HHHH
Q 017743 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN-----AMLE 269 (366)
Q Consensus 195 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~li~ 269 (366)
+.++..+...+.+.-...++.+.++...+.++.....|.+.-...|+.+.|...|++..+..-+.+....+ ....
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 33444444455555555555555554434445555555555555566666655555544332222222222 2222
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.|.-.+++..|...+.++...+.+ |+...+.-.-+..-.|+..+|++.++.|.+
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333445555555555555544322 333344444444445555566666665555
No 187
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.51 E-value=0.00086 Score=41.74 Aligned_cols=64 Identities=19% Similarity=0.144 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhc-hHHHHHHHHHHHHh
Q 017743 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN-MKELVQKLLKRMEQ 324 (366)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~ 324 (366)
++..|..+...+...|++++|+..|.+..+.+. -+...|..+..++...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345666666666667777777777766666542 24556666666666666 56667666666554
No 188
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.50 E-value=0.006 Score=50.92 Aligned_cols=265 Identities=13% Similarity=-0.004 Sum_probs=153.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCChhhHHH----HHHHHhhchHHHHHHHHHHHHHHHHh---cCCCC-CCCHHHHH
Q 017743 19 AVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNA----LITAHLHTRDKAKALAKALGYFQKMK---GMERC-KPNIVTYN 90 (366)
Q Consensus 19 ~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~----ll~~~~~~~~~~~~~~~a~~~~~~~~---~~~~~-~~~~~~~~ 90 (366)
.-+|+.|+....+.+|+..++.|.. |..+.++ |-++|. ..+++++|+++...-. +.-|- .-...+..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyf----yL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYF----YLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhh----hHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 4588999999999999999988754 5554444 444444 4455888887643210 00000 01111222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH----HcCC-CCChhhHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 017743 91 ILLRACAQARNVDQVNALFKELH----ESIL-APDIYTYNGVMDAYGKNGM--------------------IKEMESVLS 145 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~ 145 (366)
.|.+.+--.|.+++|.-...+-+ +.|- ......+..+...|...|+ ++.|.++|.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 33344444556666654433221 1220 1123455566666655443 233444444
Q ss_pred HHH----HCCC-CCCHHHHHHHHHHHhccCChhHHHHHHHHHHh----cCCC-CCHHHHHHHHHHHHhcCcHhHHHHHHH
Q 017743 146 RMK----SNQC-KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH----SKEK-PTLPTFNSMIINYGKARLQGKAEYVFQ 215 (366)
Q Consensus 146 ~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~ 215 (366)
+=. +.|- -.-...|..|...|.-.|+++.|+...+.-+. -|-. .....+..+..++.-.|+++.|.+.|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 321 1110 01234566666677778899999876654322 1211 124567778888888899999998887
Q ss_pred HHHh----CC-CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 017743 216 KMTA----MK-YTPSFITYECIITMYGYCDNVSRAREIFDELSK----L-GKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285 (366)
Q Consensus 216 ~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 285 (366)
.-.. .| ......+..+|...|.-..++++|+..+.+-.. . ...-....+-+|..+|...|..++|+.+.+
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 6432 22 123345677788888888888888887765332 1 111246677788899999999999887766
Q ss_pred Hhh
Q 017743 286 NSH 288 (366)
Q Consensus 286 ~~~ 288 (366)
.-+
T Consensus 340 ~hl 342 (639)
T KOG1130|consen 340 LHL 342 (639)
T ss_pred HHH
Confidence 544
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.49 E-value=0.00062 Score=41.80 Aligned_cols=55 Identities=15% Similarity=0.070 Sum_probs=31.0
Q ss_pred HHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
..+...|++++|...|+.+.+..+. +...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445556666666666666655433 555555566666666666666666665554
No 190
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.47 E-value=0.047 Score=45.53 Aligned_cols=109 Identities=12% Similarity=0.023 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 272 (366)
+.+..|.-+...|+...|.++-++.. .|+...|...+.+++..++|++-.++-.. . -++..|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 45556777778899888888866664 68899999999999999999988775432 1 14577999999999
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHH
Q 017743 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321 (366)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (366)
+.|+..+|..+..++ + +..-+..|.+.|++.+|.+.-.+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999888772 2 24456777888888888765433
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.44 E-value=0.026 Score=41.89 Aligned_cols=101 Identities=6% Similarity=0.028 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC---CCCCHHHH
Q 017743 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITY 229 (366)
Q Consensus 153 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~ 229 (366)
.|++..-..+..+....|+..+|...|.+....-.-.|......+.++....+++..|...++.+.+.. ..|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 344444444555555555555555555554433233344444444444444555555555555444432 1122 22
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 230 ECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 230 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
-.+.+.+...|+...|..-|+.....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 23334444444544455555444443
No 192
>PRK15331 chaperone protein SicA; Provisional
Probab=97.41 E-value=0.017 Score=42.19 Aligned_cols=85 Identities=7% Similarity=-0.047 Sum_probs=50.1
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHH
Q 017743 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 317 (366)
..|++++|..+|..+...++. +..-|..|..++-..+++++|+..|......+. -|+..+.....++...|+.+.|+.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 456666666666666555443 455556666666666666666666665544332 244445555566666666666666
Q ss_pred HHHHHHh
Q 017743 318 LLKRMEQ 324 (366)
Q Consensus 318 ~~~~m~~ 324 (366)
.|....+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 6666665
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.39 E-value=0.0014 Score=40.83 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=6.9
Q ss_pred HhhccCcHHHHHHHHHHHH
Q 017743 235 MYGYCDNVSRAREIFDELS 253 (366)
Q Consensus 235 ~~~~~~~~~~a~~~~~~~~ 253 (366)
.+...|++++|+..|+...
T Consensus 12 ~~~~~~~~~~A~~~~~~ai 30 (69)
T PF13414_consen 12 IYFQQGDYEEAIEYFEKAI 30 (69)
T ss_dssp HHHHTTHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 3333333333333333333
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.021 Score=45.92 Aligned_cols=103 Identities=11% Similarity=0.049 Sum_probs=82.4
Q ss_pred CCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc---CcHHHHHHHHHHHHhCCCCCCHHH
Q 017743 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC---DNVSRAREIFDELSKLGKDMKVST 263 (366)
Q Consensus 187 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~ 263 (366)
-+-|...|..|...|...|+.+.|..-|.+..+.. .++...+..+..++... ....++..+|+++...+.. |+.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHH
Confidence 34578889999999999999999999999888764 45666666666665543 2456788899999888655 7888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 017743 264 LNAMLEAYCMNGLPTEADLLFENSHNMG 291 (366)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (366)
...|...+...|++.+|...|+.|.+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 8888889999999999999999998864
No 195
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.36 E-value=0.0016 Score=47.64 Aligned_cols=72 Identities=22% Similarity=0.290 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHH-----hCCCCCChhHH
Q 017743 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME-----QNGIVPNKRFF 334 (366)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-----~~g~~~~~~~~ 334 (366)
.....++..+...|++++|..++..+.... +.|...|..+++++...|+...|.++|+++. +.|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 345566667777888888888888877765 3367778888888888888888888877764 23777776643
No 196
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.31 E-value=0.051 Score=42.29 Aligned_cols=81 Identities=21% Similarity=0.244 Sum_probs=42.6
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH----HHHHHHHH
Q 017743 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS----STYKLLYK 304 (366)
Q Consensus 229 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~ 304 (366)
+..++.-|=...-..+|...+..+.+. -...--.+...|.+.|.+..|..-++.+++. -|+. .....++.
T Consensus 113 ~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~ 186 (203)
T PF13525_consen 113 FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAE 186 (203)
T ss_dssp HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHH
T ss_pred HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHH
Confidence 334444444445555555555444432 1112223556677777777777777777765 2332 34466667
Q ss_pred HHHhhchHHHH
Q 017743 305 AYTKANMKELV 315 (366)
Q Consensus 305 ~~~~~~~~~~a 315 (366)
++.+.|..+.+
T Consensus 187 ~y~~l~~~~~a 197 (203)
T PF13525_consen 187 AYYKLGLKQAA 197 (203)
T ss_dssp HHHHTT-HHHH
T ss_pred HHHHhCChHHH
Confidence 77777766644
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.27 E-value=0.021 Score=46.12 Aligned_cols=87 Identities=8% Similarity=-0.046 Sum_probs=36.6
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHhhchHH
Q 017743 238 YCDNVSRAREIFDELSKLGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSHNMGV--TPDSSTYKLLYKAYTKANMKE 313 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~ 313 (366)
+.|++++|...|+.+.+..+... ...+-.+...|...|++++|...|..+.+.-. ......+..+...+...|+.+
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence 33445555544544444322210 22334444444555555555555554443210 001222333333444455555
Q ss_pred HHHHHHHHHHh
Q 017743 314 LVQKLLKRMEQ 324 (366)
Q Consensus 314 ~a~~~~~~m~~ 324 (366)
.|..+|+.+.+
T Consensus 235 ~A~~~~~~vi~ 245 (263)
T PRK10803 235 KAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 198
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.27 E-value=0.0089 Score=42.08 Aligned_cols=102 Identities=15% Similarity=0.064 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 017743 225 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304 (366)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 304 (366)
|..++..++.++++.|+++....+++..= |+.++... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566677777777777777766665432 12111000 0000 1122345677777777888
Q ss_pred HHHhhchHHHHHHHHHHHHh-CCCCCChhHHHHHHHHhhcccc
Q 017743 305 AYTKANMKELVQKLLKRMEQ-NGIVPNKRFFLEALETFSSSLA 346 (366)
Q Consensus 305 ~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~~~ 346 (366)
+|...|++..|+++++...+ .++..+..++..+++.+-.+..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 88777888888887777764 3777777777777776655544
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.25 E-value=0.013 Score=47.26 Aligned_cols=86 Identities=9% Similarity=0.051 Sum_probs=35.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccC
Q 017743 97 AQARNVDQVNALFKELHESILAPDI----YTYNGVMDAYGKNGMIKEMESVLSRMKSNQC--KPDIITFNLLIDSYGKRQ 170 (366)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 170 (366)
.+.|++++|...|+.+++.- |+. .++..+..+|...|++++|...|..+.+.-. +.....+..+...+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 33445555555555544431 221 2344444444444555555544444443210 011222222333344444
Q ss_pred ChhHHHHHHHHHHh
Q 017743 171 AFDKMEQVFKSLMH 184 (366)
Q Consensus 171 ~~~~a~~~~~~~~~ 184 (366)
+.+.|..+|+.+.+
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
No 200
>PRK15331 chaperone protein SicA; Provisional
Probab=97.23 E-value=0.045 Score=40.04 Aligned_cols=90 Identities=10% Similarity=0.002 Sum_probs=63.5
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 017743 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277 (366)
Q Consensus 198 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 277 (366)
..-+...|++++|..+|+-+...+ .-+..-|..|..++-..+++++|...|......+.. |+..+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCH
Confidence 334456788888888888777654 334555677777777788888888888776655432 444555667788888888
Q ss_pred hHHHHHHHHhhh
Q 017743 278 TEADLLFENSHN 289 (366)
Q Consensus 278 ~~a~~~~~~~~~ 289 (366)
+.|...|....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888887766
No 201
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.22 E-value=0.095 Score=43.72 Aligned_cols=123 Identities=17% Similarity=0.056 Sum_probs=91.7
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (366)
+.+..+.-+...|+...|.++-.++ -.|+...|...+.+++..++|++...+-.. . -++..|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 4445566677889999998887777 458999999999999999999988876542 2 23467899999999
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 017743 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 306 (366)
+.|+..+|...... ++ +..-+..|.+.|++.+|.+...+.. |......+...+
T Consensus 249 ~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~ 301 (319)
T PF04840_consen 249 KYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRC 301 (319)
T ss_pred HCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHC
Confidence 99999999888766 11 2556788899999999987755432 444444444443
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.19 E-value=0.055 Score=40.26 Aligned_cols=127 Identities=15% Similarity=0.071 Sum_probs=68.8
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CCHHHHHH
Q 017743 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTFNS 196 (366)
Q Consensus 118 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 196 (366)
.|+...-..|..++...|+..+|...|.+....-+..|....-.+.++....+++..|...++.+.+.... -++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555555566666666666666666666655444455556666666666666666666666666554210 01122334
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 017743 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246 (366)
Q Consensus 197 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 246 (366)
+...+...|.+..|+.-|+..... -|+...-......+.+.|+.+++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 455566666666666666666654 344333333333445555554443
No 203
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.11 Score=43.68 Aligned_cols=276 Identities=12% Similarity=-0.017 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 141 (366)
+...+..|+..+....+. ++.+...|..=+..+...|++++|.--.+.-++.... ......-.-+++...++..+|.
T Consensus 61 k~k~Y~nal~~yt~Ai~~--~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDM--CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHhhHHHHHHHHHHHHHh--CccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHHHH
Confidence 444566666666666542 2444555555555566666776666555444432100 1112222222333333333333
Q ss_pred HHHH---------------HHHHCCC-CCCHHHHHHH-HHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 017743 142 SVLS---------------RMKSNQC-KPDIITFNLL-IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204 (366)
Q Consensus 142 ~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 204 (366)
+.++ ....... +|...++..+ ..++.-.|++++|.++--..++... .+......--.++.-.
T Consensus 138 ~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 138 EKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TNAEALYVRGLCLYYN 216 (486)
T ss_pred HHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-chhHHHHhcccccccc
Confidence 2222 1111111 1333334333 2345567888888777666655421 1222222222333455
Q ss_pred CcHhHHHHHHHHHHhCCCCCCHHHH-------------HHHHHHhhccCcHHHHHHHHHHHHhC---CCCCCHHHHHHHH
Q 017743 205 RLQGKAEYVFQKMTAMKYTPSFITY-------------ECIITMYGYCDNVSRAREIFDELSKL---GKDMKVSTLNAML 268 (366)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li 268 (366)
++.+.+...|++.+..+ |+...- ..=..-..+.|++..|.+.|.+.+.. +.+++...|....
T Consensus 217 ~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra 294 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRA 294 (486)
T ss_pred cchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhH
Confidence 77778888887777653 443221 11123345678888888888887764 3456667777777
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhcc
Q 017743 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP-NKRFFLEALETFSSS 344 (366)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~ 344 (366)
.+..+.|+.++|+.-.++....+.. -...|..-..++...++|++|.+-++...+....+ ...++.....++-.|
T Consensus 295 ~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 295 LVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKS 370 (486)
T ss_pred hhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 7788889999998888877663210 12233333345666788888888888876653322 344555555555444
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.09 E-value=0.0058 Score=38.41 Aligned_cols=54 Identities=15% Similarity=0.046 Sum_probs=27.6
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.|.+.+++++|.++++.+...++ .+...+......+...|++++|...++...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455555555555555555432 2444444455555555555555555555554
No 205
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.08 E-value=0.0046 Score=45.25 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=41.6
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh-----hCCCCCCHHH
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH-----NMGVTPDSST 298 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~ 298 (366)
....++..+...|++++|..+.+.+....+- +...|..+|.+|...|+..+|.+.|+.+. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555666677777777777777766543 66677777777777777777777776654 3466776655
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.11 Score=41.00 Aligned_cols=134 Identities=10% Similarity=-0.023 Sum_probs=100.0
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHH-----HHH
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY-----ECI 232 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~l 232 (366)
+.+.++..+...|.+.-....+++.++...+.++.....+.+.-.+.||.+.|...|+...+..-..+.... ...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345566777778888889999999998877778888889999999999999999999977754333333333 333
Q ss_pred HHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 017743 233 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV 292 (366)
Q Consensus 233 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 292 (366)
...+.-.+++..|...+.++...+.. ++...|.-.-+..-.|+...|.+.++.|....+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 34556677888888888888876544 556666555555567899999999999988643
No 207
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.98 E-value=0.18 Score=42.67 Aligned_cols=77 Identities=12% Similarity=0.068 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhc---cCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 017743 125 NGVMDAYGKNGMIKEMESVLSRMKSNQ---CKPDIITFNLLIDSYGK---RQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 198 (366)
Q Consensus 125 ~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 198 (366)
..++-.|....+++..+++.+.+.... +..+..+-....-++.+ .|+.++|++++..+......+++.+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344444555566666666666655431 11112222223334444 566666666666544444455555555554
Q ss_pred HHH
Q 017743 199 INY 201 (366)
Q Consensus 199 ~~~ 201 (366)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 444
No 208
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.97 E-value=0.027 Score=39.66 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 017743 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKL-GKDMKVSTLNAMLEAYCM 273 (366)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~ 273 (366)
..|+..+..+++.+|+..+++..|.++++.+.+. +++.+..+|..|++-...
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4566666666666666666777776666665543 455556666666655443
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.92 E-value=0.0079 Score=37.79 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=32.7
Q ss_pred HhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 235 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
.|...+++++|.++++.+...++. ++..+.....++...|++++|.+.++...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 445556666666666666665443 5555555666666666666666666666554
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.92 E-value=0.13 Score=40.00 Aligned_cols=172 Identities=17% Similarity=0.104 Sum_probs=85.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 017743 91 ILLRACAQARNVDQVNALFKELHESIL--APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (366)
.....+...|++.+|.+.|+.+...-. +.-......++.++.+.|++++|...++...+.-......-+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 344456677888888888888776521 112234455667777788888888888877654222111112222222111
Q ss_pred -------------cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017743 169 -------------RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235 (366)
Q Consensus 169 -------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (366)
.+....|...|+.+ +.-|-...-..+|...+..+... . ...--.+...
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~l---------------i~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEEL---------------IKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARF 150 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHH---------------HHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHH---------------HHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHH
Confidence 11122333333333 33333333344444444433321 0 1111235566
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHH
Q 017743 236 YGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEAD 281 (366)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 281 (366)
|.+.|.+..|..-++.+.+.-+.. .....-.++.+|.+.|..+.+.
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 778888888888888887763221 1234566777777777776443
No 211
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.84 E-value=0.15 Score=42.10 Aligned_cols=138 Identities=11% Similarity=0.195 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHh--hchHHHHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHhcCC-
Q 017743 27 TRLAMWLFSEMRNSGCRPDPSVYNALITAHL--HTRDKAKALAKALGYFQKMKGMERC--KPNIVTYNILLRACAQARN- 101 (366)
Q Consensus 27 ~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~- 101 (366)
+++...+++.|.+.|.+-+..+|-+...... ...+......+|..+++.|++.... .++-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 5667888899999998888877766443332 2334556788999999999875443 2344455555433 3333
Q ss_pred ---HHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 017743 102 ---VDQVNALFKELHESILAPDIY--TYNGVMDAYGKNGM--IKEMESVLSRMKSNQCKPDIITFNLLIDSY 166 (366)
Q Consensus 102 ---~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (366)
.+.+..+|+.+.+.|+..+.. ....++........ ..++.++++.+.+.|+++....|..+.-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 356777888888877654432 23333333322222 347788888888888887777766554433
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.84 E-value=0.0049 Score=39.40 Aligned_cols=62 Identities=21% Similarity=0.238 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhC----CC-CCC-HHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 262 STLNAMLEAYCMNGLPTEADLLFENSHNM----GV-TPD-SSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
.+++.+...|...|++++|+..|++..+. |- .|+ ..++..+...+...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666677777777777666665532 11 111 3456666667777777777777776654
No 213
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.81 E-value=0.025 Score=48.44 Aligned_cols=67 Identities=7% Similarity=-0.131 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV---STLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 223 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
+.+...++.+..+|...|++++|...|+...+.++. +. .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345678899999999999999999999998887544 22 35888999999999999999999998875
No 214
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.72 E-value=0.14 Score=43.77 Aligned_cols=143 Identities=13% Similarity=0.183 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHH
Q 017743 88 TYNILLRACAQARNVDQVNALFKELHESI-LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF-NLLIDS 165 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~ 165 (366)
+|...++...+..-++.|..+|-++.+.| +.++..++++++..++ .|+...|.++|+.=... -||...| ...+..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 45555666666666667777777766666 4556666666666555 35666666666654333 2233332 344555
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPT--LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (366)
+...++-+.|..+|+..... +..+ ...|..+|..-..-|+...+..+-+.+.+. .|...+...+.+.|
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 56666666676666644433 2222 345666666666666666666666665553 34444444443333
No 215
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.33 Score=41.08 Aligned_cols=280 Identities=11% Similarity=-0.033 Sum_probs=158.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCChh-hHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 017743 16 KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPS-VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLR 94 (366)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 94 (366)
..-..+.+..++..|+..+....+.+ |+.. -|..-...+. ..+.+++|+--.+.-.+.. +-........-+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m----~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~ 125 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLM----MLGRFEEALGDARQSVRLK--DGFSKGQLREGQ 125 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHH----HHHhHhhcccchhhheecC--CCccccccchhh
Confidence 34455667778889999998888764 4333 3333222233 3344666665554443321 111112223333
Q ss_pred HHHhcCCHHHHHHHHH------------H---HHHcC-CCCChhhHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 017743 95 ACAQARNVDQVNALFK------------E---LHESI-LAPDIYTYNGVM-DAYGKNGMIKEMESVLSRMKSNQCKPDII 157 (366)
Q Consensus 95 ~~~~~~~~~~a~~~~~------------~---~~~~~-~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 157 (366)
++...++..+|.+.++ . +.... -+|...++..+- .++...|+.++|..+--...+.... +..
T Consensus 126 c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~ 204 (486)
T KOG0550|consen 126 CHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAE 204 (486)
T ss_pred hhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhH
Confidence 3333333333333332 1 11111 112223333332 4556788888888887777665321 333
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHH-------------HHHHHHHHHhcCcHhHHHHHHHHHHhC---C
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT-------------FNSMIINYGKARLQGKAEYVFQKMTAM---K 221 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~~~~~~a~~~~~~~~~~---~ 221 (366)
....-..++.-.++.+.+...|++.+..+ |+... +..-..-..+.|.+..|.+.+.+.+.. +
T Consensus 205 al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n 282 (486)
T KOG0550|consen 205 ALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN 282 (486)
T ss_pred HHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence 22222334556788899999999887743 33322 111223345789999999999998865 3
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHH
Q 017743 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP-DSSTYK 300 (366)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~ 300 (366)
..|+...|.....+..+.|++.+|+.--+...+.+.. -...|..-..++...++|++|.+-++...+..-.+ ...++.
T Consensus 283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~ 361 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLR 361 (486)
T ss_pred cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 4566677888888889999999999988888775321 12233334455666789999999998877653222 233444
Q ss_pred HHHHHHH
Q 017743 301 LLYKAYT 307 (366)
Q Consensus 301 ~l~~~~~ 307 (366)
....++-
T Consensus 362 ~A~~aLk 368 (486)
T KOG0550|consen 362 EAQLALK 368 (486)
T ss_pred HHHHHHH
Confidence 4444443
No 216
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.67 E-value=0.025 Score=44.90 Aligned_cols=89 Identities=17% Similarity=0.288 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----------------CHHHHH
Q 017743 83 KPNIVTYNILLRACAQ-----ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG----------------MIKEME 141 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a~ 141 (366)
+.|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+.. +-+=++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 4567777777777764 3567888888899999999999999999998775533 223478
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 017743 142 SVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171 (366)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (366)
+++++|...|+.||..+-..+++++.+.+-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 899999999999999999999999887665
No 217
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.65 E-value=0.037 Score=46.45 Aligned_cols=261 Identities=8% Similarity=0.001 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH--HHc--CCC-CChhhHHHHHHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNI----VTYNILLRACAQARNVDQVNALFKEL--HES--ILA-PDIYTYNGVMDAYG 132 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~--~~~-~~~~~~~~ll~~~~ 132 (366)
+.|+......+|+...+.. ..|. ..|..|.++|.-.+++++|.++...= +.. |-+ -...+...|...+-
T Consensus 29 k~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 29 KMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred hccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 4555888899999887632 2232 34666777777788888888865321 111 100 01122223334444
Q ss_pred hcCCHHHHHHHHHH----HHHCCC-CCCHHHHHHHHHHHhccCC--------------------hhHHHHHHHHHHh---
Q 017743 133 KNGMIKEMESVLSR----MKSNQC-KPDIITFNLLIDSYGKRQA--------------------FDKMEQVFKSLMH--- 184 (366)
Q Consensus 133 ~~~~~~~a~~~~~~----~~~~~~-~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~--- 184 (366)
-.|.+++|+-.-.. ..+.|- ......+..+...|...|+ ++.|.+.|.+-++
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665433221 111110 1123344455566654433 2334444433221
Q ss_pred -cCC-CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHH----hCCCC-CCHHHHHHHHHHhhccCcHHHHHHHHHHHHh---
Q 017743 185 -SKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMT----AMKYT-PSFITYECIITMYGYCDNVSRAREIFDELSK--- 254 (366)
Q Consensus 185 -~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 254 (366)
.|- -.-...|..+...|.-.|+++.|+...+.-. +.|-+ .....+..+..++.-.|+++.|.+.|+....
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 110 0112346666666677799999988776433 23322 2245788899999999999999998886432
Q ss_pred -CC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh----C-CCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 255 -LG-KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN----M-GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 255 -~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.| ......+.-+|...|.-..++++|+.++.+-.. . +..-....+..|..+|...|..+.|+.+...-.+
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 22 122355566788888888899999888776432 1 1223567889999999999999999888776554
No 218
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.57 E-value=0.13 Score=45.12 Aligned_cols=106 Identities=8% Similarity=0.067 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (366)
.+.++..+-+.|..+.|+++...-. .-.....+.|+++.|.++.++. ++...|..|.+...+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 4555555555555555554443321 1133444555555555543332 244555555555555
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
.|+++-|.+.|.+..+ +..++-.|.-.|+.+...++.+.....|
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 5666555555555422 3444444555555555555554444443
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.56 E-value=0.4 Score=40.71 Aligned_cols=167 Identities=13% Similarity=0.005 Sum_probs=106.5
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHh---cCcHhHHHHHHHHHHhCCCCCCHHHHH
Q 017743 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSK---EKPTLPTFNSMIINYGK---ARLQGKAEYVFQKMTAMKYTPSFITYE 230 (366)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 230 (366)
.+...++-+|....+++..+++.+.+.... +......-.....++.+ .|+.++|.+++..+......+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334456667999999999999999997641 11122233344556666 899999999999966666678888888
Q ss_pred HHHHHhhc---------cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hh---HHHHHH---HH-hhhCC--
Q 017743 231 CIITMYGY---------CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL-PT---EADLLF---EN-SHNMG-- 291 (366)
Q Consensus 231 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~---~a~~~~---~~-~~~~~-- 291 (366)
.+.+.|-. ...+++|...|.+.-+.. |+..+=-.++..+...|. .+ +..++- .. ..+.|
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 87776632 234778888887766543 333221112222222332 22 222222 11 22233
Q ss_pred -CCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 292 -VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 292 -~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
-..+-..+.+++.++.-.|+.+.|.+.+++|.+.
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2345566788899999999999999999999976
No 220
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.54 E-value=0.59 Score=42.47 Aligned_cols=81 Identities=15% Similarity=0.092 Sum_probs=43.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCCh---hHHHHHHHHh
Q 017743 266 AMLEAYCMNGLPTEADLLFENSHNM-GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK---RFFLEALETF 341 (366)
Q Consensus 266 ~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~ll~~~ 341 (366)
.|.+--...|..+.|+..--.+.+. ++-|....|+.+.-+.+....+...-+.|-++....--|+. ..=...++.|
T Consensus 1026 ilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a~kq~ye~La~~iF 1105 (1189)
T KOG2041|consen 1026 ILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDAEKQEYENLAFRIF 1105 (1189)
T ss_pred HHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHHHHHHHHHHHHHHh
Confidence 3334444566666666554444332 35566677777766666666666666666665544333332 2223344555
Q ss_pred hcccc
Q 017743 342 SSSLA 346 (366)
Q Consensus 342 ~~~~~ 346 (366)
++...
T Consensus 1106 sk~~p 1110 (1189)
T KOG2041|consen 1106 SKNPP 1110 (1189)
T ss_pred ccCCC
Confidence 55443
No 221
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.54 E-value=0.35 Score=39.78 Aligned_cols=101 Identities=13% Similarity=0.166 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 017743 123 TYNGVMDAYGKNGMIK---EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199 (366)
Q Consensus 123 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 199 (366)
++..++.+|...+..+ +|.++++.+.... +-...++..-+..+.+.++.+.+.+++.+|+.. +......+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 4556666777666544 4555666664442 223445555566666678888888888888765 2212333444444
Q ss_pred HHHh--cCcHhHHHHHHHHHHhCCCCCC
Q 017743 200 NYGK--ARLQGKAEYVFQKMTAMKYTPS 225 (366)
Q Consensus 200 ~~~~--~~~~~~a~~~~~~~~~~~~~~~ 225 (366)
.+.. ......+...+..+....+.|.
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 4321 1223344455554444333433
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.51 E-value=0.0093 Score=38.08 Aligned_cols=61 Identities=21% Similarity=0.275 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC---CC-hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESI--LA---PD-IYTYNGVMDAYGKNGMIKEMESVLSRM 147 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~---~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 147 (366)
.+++.+...|...|++++|...|++..+.. .. |+ ..++..+..++...|++++|++.+++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 355666666666666666666666655421 11 11 334455555556666666666665554
No 223
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.46 E-value=0.026 Score=44.84 Aligned_cols=103 Identities=13% Similarity=0.258 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHhhc-----cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHH
Q 017743 224 PSFITYECIITMYGY-----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298 (366)
Q Consensus 224 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 298 (366)
-|..+|...+..+.. .++++-....++.|.+.|+.-|..+|+.|++.+-+.. +.| ...
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP-~nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIP-QNV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------ccc-HHH
Confidence 355556666655543 3455656666677777777777777777776654321 111 112
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccc
Q 017743 299 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 345 (366)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 345 (366)
|....-.|-++ -+=++.++++|...|+.||..+-..++++|++-+
T Consensus 128 fQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 128 FQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 22222222222 2236677788888888888887777777777654
No 224
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.46 E-value=0.074 Score=45.72 Aligned_cols=66 Identities=11% Similarity=0.019 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 188 KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF----ITYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 188 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
+.+...++.+..+|.+.|++++|...|++.++.+ |+. .+|..+..+|...|+.++|...++...+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3467789999999999999999999999998874 553 46999999999999999999999999885
No 225
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.38 E-value=0.5 Score=39.77 Aligned_cols=295 Identities=13% Similarity=0.040 Sum_probs=180.9
Q ss_pred HHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHH--
Q 017743 13 IYSKLIAVMG--KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT-- 88 (366)
Q Consensus 13 ~~~~li~~~~--~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-- 88 (366)
-|..|-.++. -.|+-..|.++-.+-.+. +.-|......++.+-... -.|+.+.|.+-|+.|.+ .|....
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal--~eG~~~~Ar~kfeAMl~----dPEtRllG 156 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAAL--LEGDYEDARKKFEAMLD----DPETRLLG 156 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHH--hcCchHHHHHHHHHHhc----ChHHHHHh
Confidence 3555555554 356777777776654321 234555555565543322 45778999999999986 343332
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHH--HHHHHH
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIITF--NLLIDS 165 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~--~~l~~~ 165 (366)
...|.-..-+.|..+.|.++-+..-..- +.-.-.....+...+..|+|+.|+++++.-.+.. +.++..-- ..|+.+
T Consensus 157 LRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtA 235 (531)
T COG3898 157 LRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTA 235 (531)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Confidence 3334444456788888888888776543 2234567788889999999999999998765543 23333221 222222
Q ss_pred H---hccCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc
Q 017743 166 Y---GKRQAFDKMEQVFKSLMHSKEKPTLP-TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241 (366)
Q Consensus 166 ~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 241 (366)
- .-.-+...|...-.+..+ ..||.. .-.....++.+.|+..++-.+++.+-+.. |.+.++...+ ..+.|+
T Consensus 236 kA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~gd 309 (531)
T COG3898 236 KAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSGD 309 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCCC
Confidence 1 113345566665555544 445432 23344567888999999999999998874 4444433332 234554
Q ss_pred HHHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh-hchHHHHHHH
Q 017743 242 VSRAREIFDELSKL-GKDM-KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK-ANMKELVQKL 318 (366)
Q Consensus 242 ~~~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~ 318 (366)
.+..-+++..+. .++| +..+...+..+....|++..|..--+.... ..|....|..|.+.-.. .|+-.++..+
T Consensus 310 --ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 310 --TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred --cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHH
Confidence 232223332211 1122 566677778888888898888777666655 36777888887776544 4888888888
Q ss_pred HHHHHhC
Q 017743 319 LKRMEQN 325 (366)
Q Consensus 319 ~~~m~~~ 325 (366)
+.+.++.
T Consensus 386 lAqav~A 392 (531)
T COG3898 386 LAQAVKA 392 (531)
T ss_pred HHHHhcC
Confidence 8887765
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.98 Score=41.40 Aligned_cols=109 Identities=12% Similarity=0.026 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 272 (366)
+.+--+.-+...|+..+|.++-++.. -||...|..-+.+++..+++++-+++-+... .+.-|.-.+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34444555667788888877776665 6788888888888888888877665543322 2455777888888
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHH
Q 017743 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 320 (366)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 320 (366)
+.|+.++|.+++.+... .. -...+|.+.|++.+|.++--
T Consensus 756 ~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence 99999998888876432 11 45677888888888776543
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.14 Score=43.05 Aligned_cols=62 Identities=16% Similarity=0.056 Sum_probs=32.8
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
++..+.-++.+.+++..|++..+.....+.. |....-.=..++...|+++.|+..|+++.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3444455555555555555555555554432 4444444455555555555555555555553
No 228
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.13 E-value=0.3 Score=42.87 Aligned_cols=158 Identities=11% Similarity=0.083 Sum_probs=95.5
Q ss_pred HHHHhcCCHHHHHHHHH--HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 017743 94 RACAQARNVDQVNALFK--ELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171 (366)
Q Consensus 94 ~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (366)
....-.++++.+.++.. ++.. .+ +..-.+.++..+.+.|..+.|+++...-. .-.+...+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 34556778888776664 1111 11 24457778888888888888887754321 12344566788
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 017743 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251 (366)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 251 (366)
++.|.++.++. ++...|..|.....+.|+++-|++.|++... +..|+-.|...|+.+.-.++.+.
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 88887765433 4677888888888888888888888876542 45566666677887777777766
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 252 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
....|- ++....++.-.|+.++..+++.+.
T Consensus 399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 399 AEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 666541 455556666677877777776553
No 229
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.08 E-value=0.25 Score=35.34 Aligned_cols=72 Identities=14% Similarity=0.062 Sum_probs=38.3
Q ss_pred hccCcHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 017743 237 GYCDNVSRAREIFDELSKLGK--DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308 (366)
Q Consensus 237 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 308 (366)
.+.|++++|.+.|+.+...-+ ......-..++.+|.+.+++++|...+++.++..+.....-|...+.+++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 345666666666666665421 112344455666666666666666666666655433223334444444443
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.06 E-value=1 Score=40.24 Aligned_cols=161 Identities=12% Similarity=0.025 Sum_probs=107.2
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHh----cCcHhHHHHHHHHHHhCCCCCCHHHH
Q 017743 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL------PTFNSMIINYGK----ARLQGKAEYVFQKMTAMKYTPSFITY 229 (366)
Q Consensus 160 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 229 (366)
..++....=.||-+.+++.+.+..+.+-.-.+ -.|..++..++. ....+.|.+++..+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 44555666778999999988887664221121 234444444433 45678899999999876 5676555
Q ss_pred HHH-HHHhhccCcHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 017743 230 ECI-ITMYGYCDNVSRAREIFDELSKLG---KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 305 (366)
Q Consensus 230 ~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 305 (366)
... .+.+...|++++|.+.|+...... .+.....+--+.-++.-.++|++|.+.|..+.+.. ..+..+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 433 355667899999999999765421 12223344556667788899999999999999865 3456666665555
Q ss_pred H-HhhchH-------HHHHHHHHHHH
Q 017743 306 Y-TKANMK-------ELVQKLLKRME 323 (366)
Q Consensus 306 ~-~~~~~~-------~~a~~~~~~m~ 323 (366)
| ...|+. ++|.++|.+..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 4 446666 88888888764
No 231
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.97 E-value=0.92 Score=39.06 Aligned_cols=121 Identities=15% Similarity=0.176 Sum_probs=75.0
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHH----HHhh---ccCcHHHHHHHHHHHHhCCCCCCH----HHHHHHHHH--HHh
Q 017743 207 QGKAEYVFQKMTAMKYTPSFITYECII----TMYG---YCDNVSRAREIFDELSKLGKDMKV----STLNAMLEA--YCM 273 (366)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~---~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~--~~~ 273 (366)
-++|..+++.+.+.. +-|...-+.+. .+|. ....+.+-..+-+.+.+.|+.|-. ..-|.|..+ +..
T Consensus 396 dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 667777777776542 22332222222 2222 223445555555666677776532 333434332 455
Q ss_pred cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHH
Q 017743 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335 (366)
Q Consensus 274 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 335 (366)
.|++.++.-.-.-+.+ +.|++.+|..+.-+.....++++|..++.. ++|+..++.
T Consensus 475 qgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~d 529 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRD 529 (549)
T ss_pred cccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHH
Confidence 7888888765555544 679999999999999999999999999887 455555544
No 232
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.38 Score=40.59 Aligned_cols=125 Identities=11% Similarity=-0.001 Sum_probs=76.4
Q ss_pred HHHHhccCChhHHHHHHHHHHhc-----CCC---------CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHH
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHS-----KEK---------PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 228 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 228 (366)
.+.|.+.|++..|..-|++.... +.. .-..++..+.-++.+.+++..|+..-.+.+..+ +++...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 45677778888887777765432 011 112345666667777777877777777777765 556666
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHhhh
Q 017743 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA-DLLFENSHN 289 (366)
Q Consensus 229 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~ 289 (366)
.---..++...|+++.|+..|+.+.+..+. |...-+.|+.+-.+..+..+. .++|..|..
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666667777777888888888877776443 444444455444443333322 445555543
No 233
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.79 E-value=0.52 Score=41.06 Aligned_cols=56 Identities=13% Similarity=0.085 Sum_probs=27.5
Q ss_pred HHHHhhccCcHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 232 IITMYGYCDNVSRAREIFDELSKLGKD-MKVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 232 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
+..++-+.|+.++|.+.++++.+.... -+......|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 444444555555555555555443211 12334445555555555555555555554
No 234
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.75 E-value=0.26 Score=39.33 Aligned_cols=98 Identities=15% Similarity=0.123 Sum_probs=61.6
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC-CCC-CHHHHHHHH
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK--PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTP-SFITYECII 233 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~ 233 (366)
.|+.-+.. .+.|++..|..-|...++..+. -....+..|..++...|++++|..+|..+.+.- -.| -+..+-.|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555543 3556677777777777765321 123345557777777777777777777776542 111 235666666
Q ss_pred HHhhccCcHHHHHHHHHHHHhCC
Q 017743 234 TMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
.+..+.|+.++|..+|+.+.+.-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 67777777777777777777653
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.74 E-value=1.4 Score=39.35 Aligned_cols=83 Identities=12% Similarity=0.065 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCChhHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCcHhHHH
Q 017743 136 MIKEMESVLSRMKSNQCKPDIITFNL-LIDSYGKRQAFDKMEQVFKSLMHSKE---KPTLPTFNSMIINYGKARLQGKAE 211 (366)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~ 211 (366)
..+.|.+++..+.+. -|+...|.. -.+.+...|++++|++.|+....... +.....+--+...+.-..++++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 444555555555544 233333322 22334445555555555554432100 111222233334444455555555
Q ss_pred HHHHHHHhC
Q 017743 212 YVFQKMTAM 220 (366)
Q Consensus 212 ~~~~~~~~~ 220 (366)
..|..+.+.
T Consensus 326 ~~f~~L~~~ 334 (468)
T PF10300_consen 326 EYFLRLLKE 334 (468)
T ss_pred HHHHHHHhc
Confidence 555555543
No 236
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.72 E-value=0.5 Score=34.13 Aligned_cols=41 Identities=5% Similarity=0.116 Sum_probs=18.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 017743 92 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 133 (366)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 133 (366)
++..+...+.+.....+++.+...+ ..+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3444444444555555555544443 2344444445555443
No 237
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.70 E-value=1 Score=37.35 Aligned_cols=129 Identities=14% Similarity=0.263 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhccCC-
Q 017743 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGK--NG----MIKEMESVLSRMKSNQC---KPDIITFNLLIDSYGKRQA- 171 (366)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 171 (366)
+++...+++.+.+.|+.-+..+|-+..-.... .. ....+..+++.|++... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677777777777666555543333222 22 23456777777776532 2333444444332 2222
Q ss_pred ---hhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCc--HhHHHHHHHHHHhCCCCCCHHHHHHH
Q 017743 172 ---FDKMEQVFKSLMHSKEKPT--LPTFNSMIINYGKARL--QGKAEYVFQKMTAMKYTPSFITYECI 232 (366)
Q Consensus 172 ---~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 232 (366)
.+.++.+|+.+.+.|...+ ....+.++..+..... ...+.++++.+.+.++++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 2445555666655554432 2222223322222111 23555666666666665555554443
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.67 E-value=0.55 Score=37.51 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=43.1
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CC-CHHHHHHHH
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKD--MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV-TP-DSSTYKLLY 303 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p-~~~~~~~l~ 303 (366)
.|+.-+..+ +.|++..|...|....+..+. .....+-.|..++...|++++|..+|..+.+.-. .| -+..+-.|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344444333 344455555555555443221 1122233355555555555555555555443210 01 124444444
Q ss_pred HHHHhhchHHHHHHHHHHHHh
Q 017743 304 KAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~m~~ 324 (366)
....+.|+.++|..+|+++.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 555555555555555555544
No 239
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.66 E-value=0.47 Score=33.30 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=62.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHH
Q 017743 97 AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176 (366)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 176 (366)
.-.|.+++..++..+...+. +..-+|-++.-....-+-+-..++++.+-+. -|. ..+|+.....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHH
Confidence 34566666666666665542 3444444444444443444444444443221 111 2233344333
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 017743 177 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
..+-.+ ..+...+...+..+...|.-+...+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 77 ~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333222 1233444555566666666666666666665433 5555666666666666666666666666666655
Q ss_pred C
Q 017743 257 K 257 (366)
Q Consensus 257 ~ 257 (366)
.
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 3
No 240
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.63 Score=38.36 Aligned_cols=154 Identities=6% Similarity=-0.002 Sum_probs=101.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhcCcH
Q 017743 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP----TFNSMIINYGKARLQ 207 (366)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~ 207 (366)
--.|++.+|-..++++.+. .+.|...+...=.+|.-.|+.+.-...++++... -.++.. .-.....++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467777777788888776 4557777777778888888888888888887654 223332 223334455677888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChhHHHHHH
Q 017743 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD---MKVSTLNAMLEAYCMNGLPTEADLLF 284 (366)
Q Consensus 208 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~ 284 (366)
++|++.-++..+.+ +.|.-.-.++...+.-.|+..++.++...-...--. .-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 88888888887766 556666667777777788888888776654432111 01122333344556668888888888
Q ss_pred HHhh
Q 017743 285 ENSH 288 (366)
Q Consensus 285 ~~~~ 288 (366)
+.-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7643
No 241
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.51 E-value=0.067 Score=29.56 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 264 LNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
+..+...|...|++++|+++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444444555555555555555555443
No 242
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=0.7 Score=38.11 Aligned_cols=152 Identities=10% Similarity=0.019 Sum_probs=104.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHhccCCh
Q 017743 97 AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF----NLLIDSYGKRQAF 172 (366)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~ 172 (366)
-..|+..+|-..++++++. .|.|..++...=.+|...|+.+.-...++++... ..++...| ..+.-++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467888888888888875 4567777777778888899988888888887654 23344333 3334455678999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCC---CCHHHHHHHHHHhhccCcHHHHHHHH
Q 017743 173 DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT---PSFITYECIITMYGYCDNVSRAREIF 249 (366)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 249 (366)
++|++.-++..+.+ +.|.-.-.+....+...|++.++.++..+-...=.. .-...|-...-.+...+.++.|+.+|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999988887753 335556666777777888999988877654432101 11223444444566678899999998
Q ss_pred HH
Q 017743 250 DE 251 (366)
Q Consensus 250 ~~ 251 (366)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 76
No 243
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.47 E-value=1.3 Score=37.09 Aligned_cols=232 Identities=11% Similarity=0.017 Sum_probs=128.9
Q ss_pred HhcCChhHHHHHHHHHHhcC--CCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhc
Q 017743 22 GKKGQTRLAMWLFSEMRNSG--CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 99 (366)
Q Consensus 22 ~~~~~~~~A~~~~~~~~~~g--~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 99 (366)
....+.++|+..+.+-..+- ..--..++..+..+.+..+...+.+..|....+...+...-..-...|..+.+++-+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777766654420 0011234444445555444333333333333333332110111234556666666666
Q ss_pred CCHHHHHHHHHHHHHc-CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHhccC
Q 017743 100 RNVDQVNALFKELHES-ILAPD---IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC-----KPDIITFNLLIDSYGKRQ 170 (366)
Q Consensus 100 ~~~~~a~~~~~~~~~~-~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~ 170 (366)
-++.+++.+-..-... |..|. ....-++..++...+.++++++.|+...+.-. .....++..+...|....
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 6677777666554432 22221 12334466677778889999999888754321 123457788888899999
Q ss_pred ChhHHHHHHHHHHhc----CCCCCHHHHH-----HHHHHHHhcCcHhHHHHHHHHHH----hCCCCCC-HHHHHHHHHHh
Q 017743 171 AFDKMEQVFKSLMHS----KEKPTLPTFN-----SMIINYGKARLQGKAEYVFQKMT----AMKYTPS-FITYECIITMY 236 (366)
Q Consensus 171 ~~~~a~~~~~~~~~~----~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~-~~~~~~l~~~~ 236 (366)
|+++|.-+..+..+. ++..-..-|. .+.-++...|....|.+.-++.. ..|-.+. ......+...|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 999887666554332 2221111222 33445666777777776665543 3343332 34556777888
Q ss_pred hccCcHHHHHHHHHHHH
Q 017743 237 GYCDNVSRAREIFDELS 253 (366)
Q Consensus 237 ~~~~~~~~a~~~~~~~~ 253 (366)
-..|+.+.|+.-|+...
T Consensus 257 R~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAM 273 (518)
T ss_pred HhcccHhHHHHHHHHHH
Confidence 88999999888877643
No 244
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.42 E-value=0.32 Score=39.40 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh-----CCCCCCHHHHHH
Q 017743 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN-----MGVTPDSSTYKL 301 (366)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~ 301 (366)
.++..++..+...|+.+.+...++++....+. +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34555666666666666666666666655433 556666666666666666666666665543 355555554443
Q ss_pred HH
Q 017743 302 LY 303 (366)
Q Consensus 302 l~ 303 (366)
..
T Consensus 233 y~ 234 (280)
T COG3629 233 YE 234 (280)
T ss_pred HH
Confidence 33
No 245
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.38 E-value=2 Score=38.86 Aligned_cols=217 Identities=9% Similarity=0.059 Sum_probs=117.3
Q ss_pred HHHHHHHHhcCCh--hHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC-HHHHHH
Q 017743 15 SKLIAVMGKKGQT--RLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN-IVTYNI 91 (366)
Q Consensus 15 ~~li~~~~~~~~~--~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ 91 (366)
+..=++|.+.++. -+.+.-+++++++|-.|+....... ++ -.|.+.+|-++|.+--. ... ...|+.
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~---~A----y~gKF~EAAklFk~~G~----enRAlEmyTD 670 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADV---FA----YQGKFHEAAKLFKRSGH----ENRALEMYTD 670 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHH---HH----hhhhHHHHHHHHHHcCc----hhhHHHHHHH
Confidence 3334455554443 2333445567777777776544333 33 44568888888877432 111 111211
Q ss_pred -----HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH------HHHCCC---CCCHH
Q 017743 92 -----LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR------MKSNQC---KPDII 157 (366)
Q Consensus 92 -----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~------~~~~~~---~~~~~ 157 (366)
..+-+...|..++-..+.++--+. ..+..--.+....+...|+.++|..+.-+ +.+.+. ..+..
T Consensus 671 lRMFD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere 748 (1081)
T KOG1538|consen 671 LRMFDYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAERE 748 (1081)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhh
Confidence 122333444443333333221111 11111112334455566777766655321 111111 12445
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHH----------
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI---------- 227 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------- 227 (366)
+...+..-+.+...+..|-++|..|-+ ...+++.....+++.+|..+-+...+. .||..
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 555555566677888899999988843 235677788899999999888776654 33321
Q ss_pred -HHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 228 -TYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 228 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
-+.-.-.+|.+.|+-.+|.++++++...
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1233345777788888888888877653
No 246
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.37 E-value=0.065 Score=29.60 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=18.8
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHH
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 265 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 265 (366)
++..+..+|...|++++|.++|+++.+..+. |...+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~ 39 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWR 39 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHH
Confidence 3444555555555555555555555554433 344433
No 247
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.32 E-value=2.3 Score=38.99 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 017743 84 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 146 (366)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 146 (366)
.+....-.+..++.+.|.-++|.+.|-+. +. | ...+..|...++|.+|.++-+.
T Consensus 850 e~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 850 EDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred cccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666777777777776665332 11 1 1234555666666666665543
No 248
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.30 E-value=0.35 Score=39.19 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 017743 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK-----LGKDMKVSTLNA 266 (366)
Q Consensus 192 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 266 (366)
.++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 344445555555555555555555555443 34455555555555555555555555555443 344554444443
Q ss_pred H
Q 017743 267 M 267 (366)
Q Consensus 267 l 267 (366)
.
T Consensus 233 y 233 (280)
T COG3629 233 Y 233 (280)
T ss_pred H
Confidence 3
No 249
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.19 E-value=0.69 Score=32.39 Aligned_cols=91 Identities=13% Similarity=0.106 Sum_probs=53.4
Q ss_pred HHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHH---HHHHHHHHhhccCc
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI---TYECIITMYGYCDN 241 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 241 (366)
++...|+.+.|++.|.+.+.. .+.....||.-..++.-.|+.++|.+=+++..+..-.-+.. .|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345567777777777766654 33356667777777777777777776666665542122222 22222334555677
Q ss_pred HHHHHHHHHHHHhCC
Q 017743 242 VSRAREIFDELSKLG 256 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~ 256 (366)
.+.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777666655
No 250
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=1.2 Score=35.08 Aligned_cols=207 Identities=11% Similarity=0.114 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (366)
...|.....+|....++++|...+.+..+. .+.+...|++ ....+.|.-+.+++... +--...|+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-----------AKayEqaamLake~~kl---sEvvdl~e 95 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-----------AKAYEQAAMLAKELSKL---SEVVDLYE 95 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-----------HHHHHHHHHHHHHHHHh---HHHHHHHH
Confidence 445777777788888888888877766531 1222222221 22355666666666541 22234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCCCHHHHHHHHHH
Q 017743 91 ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN---Q--CKPDIITFNLLIDS 165 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~ 165 (366)
.....|..+|.++.|-..+++.-+. ...-++++|+++|.+.... + .+.-...+..+-..
T Consensus 96 KAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 96 KASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 6777788888887777776665432 1223444555555443211 0 00011222333344
Q ss_pred HhccCChhHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC---CCCCHHHHHHHHHHhh
Q 017743 166 YGKRQAFDKMEQVFKSLMHS----KEKPT-LPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYG 237 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~ 237 (366)
+.+...+++|-..+.+-... .-.++ -..|...|-.+.-..++..|...++.-.+.+ -+-+..+...|+.+|-
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd 239 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD 239 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc
Confidence 55555555554443332111 01111 1234444455555567777777776643322 1223456666666653
Q ss_pred ccCcHHHHHHHH
Q 017743 238 YCDNVSRAREIF 249 (366)
Q Consensus 238 ~~~~~~~a~~~~ 249 (366)
.|+.+++..++
T Consensus 240 -~gD~E~~~kvl 250 (308)
T KOG1585|consen 240 -EGDIEEIKKVL 250 (308)
T ss_pred -cCCHHHHHHHH
Confidence 56666655544
No 251
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.19 E-value=0.91 Score=33.71 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=11.1
Q ss_pred HHHHhcCCCCChhhHHHHHHHHh
Q 017743 35 SEMRNSGCRPDPSVYNALITAHL 57 (366)
Q Consensus 35 ~~~~~~g~~p~~~~~~~ll~~~~ 57 (366)
..+.+.++.|+...+..++..+.
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi 40 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLI 40 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHH
Confidence 33344444555555555555554
No 252
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.14 E-value=0.83 Score=32.98 Aligned_cols=42 Identities=14% Similarity=0.263 Sum_probs=20.4
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 017743 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203 (366)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 203 (366)
.++..+...+.......+++.+...+. .+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444555555555555544432 344455555555544
No 253
>PRK11906 transcriptional regulator; Provisional
Probab=95.11 E-value=2.1 Score=37.36 Aligned_cols=146 Identities=12% Similarity=0.054 Sum_probs=99.0
Q ss_pred ChhHHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHh---------cCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 017743 171 AFDKMEQVFKSLMHS-KEKPT-LPTFNSMIINYGK---------ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239 (366)
Q Consensus 171 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 239 (366)
+.+.|..+|.+.... ...|+ ...|..+..++.. ..+..+|.++-++..+.+ +.|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 456788889988722 13443 4455555444432 234556777778888876 66788888888877888
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHhhchHHHHH
Q 017743 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS---STYKLLYKAYTKANMKELVQ 316 (366)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~ 316 (366)
++++.|...|++....++. ...+|......+.-.|+.++|.+.+++..+. .|.. ......++.|...+ .++|+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhH
Confidence 8899999999999988655 5666666666777789999999999997765 3432 23333444555544 55566
Q ss_pred HHHHH
Q 017743 317 KLLKR 321 (366)
Q Consensus 317 ~~~~~ 321 (366)
++|-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 66543
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.90 E-value=0.86 Score=31.95 Aligned_cols=92 Identities=17% Similarity=0.034 Sum_probs=61.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccC
Q 017743 94 RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT---FNLLIDSYGKRQ 170 (366)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~ 170 (366)
-+.+..|+++.|++.|.+.+..- +-....||.-..++.-.|+.++|++=+++..+..-..+... |..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34667788888888888877652 34677788888888888888888887777765422222222 222334466677
Q ss_pred ChhHHHHHHHHHHhcC
Q 017743 171 AFDKMEQVFKSLMHSK 186 (366)
Q Consensus 171 ~~~~a~~~~~~~~~~~ 186 (366)
+-+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7788877777766654
No 255
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.89 E-value=1.7 Score=35.28 Aligned_cols=120 Identities=9% Similarity=0.086 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ-AR-NVDQVNALFKELHES-ILAPDIYTYNGVMDAYGKNGMIK 138 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~ 138 (366)
....+.+|+++|+.......+-.|..+...+++.... .+ ....-.++.+-+... |-.++..+...++..++..+++.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 3445788888888544323345677777777777766 22 233333344444332 34567777778888888888888
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCChhHHHHHHHH
Q 017743 139 EMESVLSRMKSN-QCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 181 (366)
Q Consensus 139 ~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 181 (366)
+..++++..... +...|...|..+|......|+..-..++.++
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 888888876655 4556777888888888888887766655543
No 256
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=0.96 Score=36.95 Aligned_cols=101 Identities=14% Similarity=0.131 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHH
Q 017743 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLG---KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299 (366)
Q Consensus 223 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 299 (366)
+....+...++.......+++.+...+-.+.... ..|+...+ ..++.+. .-++++++.++..=+..|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchhhH
Confidence 3344445555555555566666666555554321 11111111 1222222 23566777777776777777777777
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 300 KLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 300 ~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
+.+++.+.+.+++.+|..+.-.|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777777666665543
No 257
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.85 E-value=0.9 Score=31.94 Aligned_cols=140 Identities=11% Similarity=0.099 Sum_probs=60.6
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcC
Q 017743 21 MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR 100 (366)
Q Consensus 21 ~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 100 (366)
+.-.|.+++..++..+...+ .+..-+|=+|..... .-+-+-..+.++.+-+...+.+- .-.-.++.+|+..|
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiD----aa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n 83 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIID----AADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRN 83 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHH----H--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecch----hhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhc
Confidence 44568888889998888764 234444444443331 11133334444444332111110 00112222222222
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHH
Q 017743 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180 (366)
Q Consensus 101 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 180 (366)
. +...+...+..+...|+-++-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.
T Consensus 84 ~------------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 84 K------------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp ---------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred c------------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 1 2222333445555555656655666555432 24455555556666666666666666666
Q ss_pred HHHhcCC
Q 017743 181 SLMHSKE 187 (366)
Q Consensus 181 ~~~~~~~ 187 (366)
+.-+.|+
T Consensus 145 ~ACekG~ 151 (161)
T PF09205_consen 145 EACEKGL 151 (161)
T ss_dssp HHHHTT-
T ss_pred HHHHhch
Confidence 6555554
No 258
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.82 E-value=3.3 Score=38.24 Aligned_cols=303 Identities=11% Similarity=0.045 Sum_probs=162.7
Q ss_pred cccCCHHHHH-----HHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCC
Q 017743 6 WYIADTGIYS-----KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME 80 (366)
Q Consensus 6 ~~~~~~~~~~-----~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (366)
|++.+..-|. .+++-+...+.+..|+++-..+...-..- ...|.....-+.+..+.. +.+.+..+-+++.. .
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~-~ 503 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKM-DEEVLDKIDEKLSA-K 503 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCcc-chHHHHHHHHHhcc-c
Confidence 4444444443 35677778889999999888775321111 445555544444332211 12222233333332 1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----
Q 017743 81 RCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL----APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ----- 151 (366)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----- 151 (366)
. -....|..+.+-....|+++.|..+++.=...+. -.+..-+...+.-..+.|+.+-...++-.+.+.-
T Consensus 504 -~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 504 -L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL 581 (829)
T ss_pred -C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 1 3345677888888889999999888764322221 1123334555666777888887777776665431
Q ss_pred ------CCCCHHHHHHHHH--------HHhccCChhHHHHHH--HHHHhc-CCCCCHHHHHHHHHHHHhcCc--------
Q 017743 152 ------CKPDIITFNLLID--------SYGKRQAFDKMEQVF--KSLMHS-KEKPTLPTFNSMIINYGKARL-------- 206 (366)
Q Consensus 152 ------~~~~~~~~~~l~~--------~~~~~~~~~~a~~~~--~~~~~~-~~~~~~~~~~~li~~~~~~~~-------- 206 (366)
.+.....|.-++. .+...++-..+...| +..... -+.+-..........+.+...
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHH
Confidence 1111112222111 011111111111111 110000 011111122223334443332
Q ss_pred --HhHHHHHHHHHHh-CCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 017743 207 --QGKAEYVFQKMTA-MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283 (366)
Q Consensus 207 --~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 283 (366)
...-..+.+.+.. .+......+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-+++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 1112222222321 2323334455555666677888889988766554 35888898899999999999998887
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 284 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
-+..+. +.-|.-++.+|.+.|+.++|.+++-+..
T Consensus 738 Akskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 738 AKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HhccCC------CCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 776542 3447778899999999999998877653
No 259
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=1.4 Score=41.02 Aligned_cols=119 Identities=13% Similarity=0.169 Sum_probs=68.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 017743 16 KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95 (366)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (366)
.-+..+++..-++-|+.+-.. . ..|..+...++..|+......|++++|...+-+... -+.|. .++.-
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~---~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~s-----~Vi~k 406 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKS---Q--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEPS-----EVIKK 406 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHh---c--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCChH-----HHHHH
Confidence 344555555556666555332 2 234445555555555444455667777766655542 12332 24455
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 017743 96 CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 147 (366)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 147 (366)
|....++..-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+..
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 56666666666777777777654 5556667777777777766655555443
No 260
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=1.5 Score=40.85 Aligned_cols=168 Identities=14% Similarity=0.120 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNI--VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 139 (366)
+...+..|+.+-+.-. ..++. .......+.+.+.|++++|...|-+.+.. +.| ..++.-|.....+.+
T Consensus 346 kK~ly~~Ai~LAk~~~----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~Ikn 415 (933)
T KOG2114|consen 346 KKNLYKVAINLAKSQH----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKN 415 (933)
T ss_pred HhhhHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHH
Confidence 5555778887766533 22322 23334455567889999999998776643 233 235666777778888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Q 017743 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTFNSMIINYGKARLQGKAEYVFQKMT 218 (366)
Q Consensus 140 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 218 (366)
-..+++.+.+.|+. +...-+.|+.+|.+.++.+.-.+..+..- .|.. -| ....+..+.+.+-.++|..+-.+..
T Consensus 416 Lt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 416 LTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred HHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhc
Confidence 88999999999876 67777889999999999998887776654 2221 12 3445666666777777766554443
Q ss_pred hCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 017743 219 AMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252 (366)
Q Consensus 219 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 252 (366)
. .......++. ..+++++|.+.+..+
T Consensus 491 ~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 491 K-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred c-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 2 2333344433 457778887777654
No 261
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.51 E-value=5.2 Score=39.14 Aligned_cols=81 Identities=11% Similarity=-0.022 Sum_probs=40.9
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHhCCCCCCHH--HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 017743 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFI--TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274 (366)
Q Consensus 197 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 274 (366)
.+.+|...|++.+|..+..++... -+.. +-..|+.-+...++.-+|-++..+.... ....+..+++.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka 1039 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKA 1039 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhH
Confidence 345555556666665555554421 1111 1244555555666666666665554432 12233445555
Q ss_pred CChhHHHHHHHHhh
Q 017743 275 GLPTEADLLFENSH 288 (366)
Q Consensus 275 g~~~~a~~~~~~~~ 288 (366)
..+++|.++.....
T Consensus 1040 ~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1040 KEWEEALRVASKAK 1053 (1265)
T ss_pred hHHHHHHHHHHhcc
Confidence 56666666655443
No 262
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.49 E-value=2.9 Score=36.20 Aligned_cols=141 Identities=10% Similarity=0.110 Sum_probs=86.8
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 017743 21 MGKKGQTRLAMWLFSEMRNSGCR-PD----PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95 (366)
Q Consensus 21 ~~~~~~~~~A~~~~~~~~~~g~~-p~----~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (366)
+-+.+++.+|.++|.++.+.--. |. ....+.+++++. .++.+.....+....+..|-.+-...|..+ .
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-----l~nld~Me~~l~~l~~~~~~s~~l~LF~~L--~ 88 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-----LNNLDLMEKQLMELRQQFGKSAYLPLFKAL--V 88 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-----HhhHHHHHHHHHHHHHhcCCchHHHHHHHH--H
Confidence 44788999999999998654211 11 223456677774 233556666666665533222222222222 3
Q ss_pred HHhcCCHHHHHHHHHHHHHc--CCCC------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHH
Q 017743 96 CAQARNVDQVNALFKELHES--ILAP------------DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ----CKPDII 157 (366)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~ 157 (366)
+.+.+.++.|.+.+...... +..| |-.-=+..+.++...|++.++..+++++...- ...+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 55788999999988877654 2221 11112456677888999999999988886543 346888
Q ss_pred HHHHHHHHHhc
Q 017743 158 TFNLLIDSYGK 168 (366)
Q Consensus 158 ~~~~l~~~~~~ 168 (366)
+|+.++-.+++
T Consensus 169 ~yd~~vlmlsr 179 (549)
T PF07079_consen 169 MYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhH
Confidence 88886666554
No 263
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=2.3 Score=34.61 Aligned_cols=49 Identities=10% Similarity=0.077 Sum_probs=20.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 017743 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182 (366)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 182 (366)
..|++.+|..+|......... +...--.+..+|...|+.+.|..++..+
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 344444444444444433211 2333333444444444444444444443
No 264
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.36 E-value=1.5 Score=32.22 Aligned_cols=53 Identities=11% Similarity=0.111 Sum_probs=28.4
Q ss_pred HhcCcHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 017743 202 GKARLQGKAEYVFQKMTAMKY-TPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 202 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
.+.++.+++..++.-+.-... .|...++... .+...|++.+|..+|+.+....
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC
Confidence 345666677777666665421 1112233322 3345677777777777765543
No 265
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.34 E-value=0.12 Score=26.97 Aligned_cols=26 Identities=12% Similarity=0.173 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 017743 13 IYSKLIAVMGKKGQTRLAMWLFSEMR 38 (366)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~ 38 (366)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57889999999999999999999954
No 266
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.31 E-value=0.69 Score=30.39 Aligned_cols=62 Identities=16% Similarity=0.245 Sum_probs=37.4
Q ss_pred hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC-CCCCChhHHHHHHHH
Q 017743 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN-GIVPNKRFFLEALET 340 (366)
Q Consensus 277 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~ 340 (366)
.-++.+-++.+...++.|++......+++|.+.+++..|.++++-.+.+ |- +...|..+++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqe 85 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQE 85 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHH
Confidence 3345555666666666777777777777777777777777777666532 22 33345554443
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.30 E-value=2.6 Score=34.76 Aligned_cols=223 Identities=14% Similarity=0.086 Sum_probs=116.3
Q ss_pred hcCCHHHHHHHHHHHHHcC--CCCChh-----hHHHHHHHHHhcC-CHHHHHHHHHHHHHC--------CCCCC-----H
Q 017743 98 QARNVDQVNALFKELHESI--LAPDIY-----TYNGVMDAYGKNG-MIKEMESVLSRMKSN--------QCKPD-----I 156 (366)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~--~~~~~~-----~~~~ll~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~-----~ 156 (366)
+.|+.+.|..++.++.... ..|+.. .+..+.......+ +++.|...+++..+. ...|+ .
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4566666666666655432 112211 1122222333444 776666666554322 12233 3
Q ss_pred HHHHHHHHHHhccCChh---HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017743 157 ITFNLLIDSYGKRQAFD---KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233 (366)
Q Consensus 157 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 233 (366)
.++..++.+|...+..+ +|..+++.+... .+..+..+..-+..+.+.++.+.+.+.+.+|...- ......+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 45667778888777655 455566666443 22235556566777777899999999999999763 21233444444
Q ss_pred HHh---hccCcHHHHHHHHHHHHhCCCCCCHH-HHHH-HHHHH---HhcCC------hhHHHHHHHHhhh-CCCCCCHHH
Q 017743 234 TMY---GYCDNVSRAREIFDELSKLGKDMKVS-TLNA-MLEAY---CMNGL------PTEADLLFENSHN-MGVTPDSST 298 (366)
Q Consensus 234 ~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~-li~~~---~~~g~------~~~a~~~~~~~~~-~~~~p~~~~ 298 (366)
..+ ... ....+...++.+....+.|... .... ++... .+.++ .+....++....+ .+.+.+..+
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 444 332 3456666776666554555543 1111 11111 11111 3334444443222 122333333
Q ss_pred HH---HH----HHHHHhhchHHHHHHHHHHHH
Q 017743 299 YK---LL----YKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 299 ~~---~l----~~~~~~~~~~~~a~~~~~~m~ 323 (366)
-. ++ ...+.+.++++.|..+|+-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 22 234667899999999988544
No 268
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.28 E-value=3 Score=35.43 Aligned_cols=291 Identities=10% Similarity=0.046 Sum_probs=166.9
Q ss_pred ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH--HHhcCCHH
Q 017743 26 QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA--CAQARNVD 103 (366)
Q Consensus 26 ~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~ 103 (366)
....+...|..-+. ..-|..|-.++.-.+ .|+-..|.++-.+..+ -+..|......++.+ -.-.|+.+
T Consensus 68 sP~t~~Ryfr~rKR------drgyqALStGliAag--AGda~lARkmt~~~~~--llssDqepLIhlLeAQaal~eG~~~ 137 (531)
T COG3898 68 SPYTARRYFRERKR------DRGYQALSTGLIAAG--AGDASLARKMTARASK--LLSSDQEPLIHLLEAQAALLEGDYE 137 (531)
T ss_pred CcHHHHHHHHHHHh------hhHHHHHhhhhhhhc--cCchHHHHHHHHHHHh--hhhccchHHHHHHHHHHHHhcCchH
Confidence 34455556655432 223444444444332 2445566666555442 124455555555543 44579999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 017743 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183 (366)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 183 (366)
.|.+-|+.|.... +.-.--...|.-.-.+.|..+.|.++-+.....-.. -...+...+...+..|+|+.|+++.+.-.
T Consensus 138 ~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 138 DARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 9999999998631 111112233333345688999998888887665322 35677888899999999999999998765
Q ss_pred hcC-CCCCHH--HHHHHHHHHHh---cCcHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 017743 184 HSK-EKPTLP--TFNSMIINYGK---ARLQGKAEYVFQKMTAMKYTPSFI-TYECIITMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 184 ~~~-~~~~~~--~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
... +.++.. .-..|+.+-.. .-+...|...-.+..+. .|+.. .--.-..++.+.|++.++-.+++.+-+..
T Consensus 216 ~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e 293 (531)
T COG3898 216 AAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE 293 (531)
T ss_pred HHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC
Confidence 543 233332 12223332211 23556666665555543 55533 23344567788999999999999998876
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCC-CHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHH
Q 017743 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM-GVTP-DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 334 (366)
Q Consensus 257 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 334 (366)
+.|+ .+.. ..+.+.|+. +..-+++.... .++| +......+.++....|++..|..--+...+ ..|....|
T Consensus 294 PHP~--ia~l--Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~ 365 (531)
T COG3898 294 PHPD--IALL--YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAY 365 (531)
T ss_pred CChH--HHHH--HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHH
Confidence 5554 3322 233445543 33223222211 1233 456677778888888888877766555544 44655555
Q ss_pred HHHH
Q 017743 335 LEAL 338 (366)
Q Consensus 335 ~~ll 338 (366)
..+-
T Consensus 366 lLlA 369 (531)
T COG3898 366 LLLA 369 (531)
T ss_pred HHHH
Confidence 5443
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.24 E-value=3.6 Score=36.22 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS-FITYECII 233 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 233 (366)
..+-..+..++.+.|+.++|++.++++.+.... ........++.++...+.+.++..++.+..+...+.+ ...|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 333345666677788888888888888764332 2344667788888888888888888888765443333 34555544
No 270
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.20 E-value=2.3 Score=33.84 Aligned_cols=57 Identities=18% Similarity=0.129 Sum_probs=34.7
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 267 MLEAYCMNGLPTEADLLFENSHNMGVTPD---SSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
+.+.|.+.|.+..|..-+++|.+. .+-. ...+..+..+|...|..++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 455667777777777777777665 2211 23455566677777777777666554443
No 271
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.06 E-value=1.6 Score=31.40 Aligned_cols=84 Identities=10% Similarity=0.001 Sum_probs=50.7
Q ss_pred hhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 017743 46 PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP-NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124 (366)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 124 (366)
...|..-..++ ..|++++|.+.|+.+.......+ ...+.-.++.+|.+.+++++|...+++.++........-|
T Consensus 11 ~~ly~~a~~~l-----~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 11 QELYQEAQEAL-----QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred HHHHHHHHHHH-----HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 34444444444 55567777777777765322211 2345566777788888888888888888776543334556
Q ss_pred HHHHHHHHhc
Q 017743 125 NGVMDAYGKN 134 (366)
Q Consensus 125 ~~ll~~~~~~ 134 (366)
...+.+++..
T Consensus 86 a~Y~~gL~~~ 95 (142)
T PF13512_consen 86 AYYMRGLSYY 95 (142)
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 272
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.03 E-value=2.5 Score=33.65 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 017743 62 KAKALAKALGYFQKMKGMERCKP-NIVTYNILLRACAQARNVDQVNALFKELHES 115 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (366)
..|++++|.+.|+.+.......| ...+.-.++-++.+.++++.|...+++..+.
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 34445555555555553321111 2233344444555555555555555555544
No 273
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.00 E-value=2.4 Score=33.43 Aligned_cols=205 Identities=11% Similarity=0.087 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (366)
..|.....+|....++++|...+.+..+. .+-+..-|. . ....+.|.-+.+++.+. ..-...|+.....|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 45667777888888999888877776542 222222222 1 22344455555555443 11233455556667
Q ss_pred hccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC---C--CCCCHHHHHHHHHHhhccCc
Q 017743 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM---K--YTPSFITYECIITMYGYCDN 241 (366)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~ 241 (366)
..+|.++.|-..+++.-+. ...-+++.|++++++.... + ..--...+..+-+.+.+..+
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 7777777666666554321 1223344444444443211 1 00112234445555666666
Q ss_pred HHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCC---CCCCHHHHHHHHHHHHhhchHH
Q 017743 242 VSRAREIFDELSKL----GKDMK-VSTLNAMLEAYCMNGLPTEADLLFENSHNMG---VTPDSSTYKLLYKAYTKANMKE 313 (366)
Q Consensus 242 ~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~ 313 (366)
+++|-..+..-... .--++ -..|-..|-.+....++..|.+.++...+.+ -+-+..+...|+.+|- .|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHH
Confidence 66665544332211 00111 2334455555666677888888877643321 1234567777777764 36666
Q ss_pred HHHHH
Q 017743 314 LVQKL 318 (366)
Q Consensus 314 ~a~~~ 318 (366)
++.++
T Consensus 245 ~~~kv 249 (308)
T KOG1585|consen 245 EIKKV 249 (308)
T ss_pred HHHHH
Confidence 55544
No 274
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.95 E-value=0.85 Score=34.51 Aligned_cols=97 Identities=10% Similarity=0.083 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHhhhC---CCCCCHHHHHH
Q 017743 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKL 301 (366)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~ 301 (366)
..+..+...|++.|+.+.|.+.|.++.+....+ -...+-.+|......+++..+.....+.... |-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456677777777777777777777776653332 2344566777777777777777766665432 11112221111
Q ss_pred HHH--HHHhhchHHHHHHHHHHHH
Q 017743 302 LYK--AYTKANMKELVQKLLKRME 323 (366)
Q Consensus 302 l~~--~~~~~~~~~~a~~~~~~m~ 323 (366)
... ++...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 112 2345677777777766554
No 275
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.91 E-value=3.9 Score=35.47 Aligned_cols=141 Identities=13% Similarity=0.158 Sum_probs=78.3
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSK-EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF-ITYECIITM 235 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~ 235 (366)
+|...+....+..-.+.|..+|-++.+.+ ..+++..+++++..++ .|+..-|..+|+.-... -||. .-....+..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 34445555555666666777777766665 4455666666666554 45666666666654443 2332 222444455
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 017743 236 YGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304 (366)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 304 (366)
+...++-..|..+|+..... +.. -...|..+|..-..-|+...+..+-+.|... .|...+...+..
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~S 543 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTS 543 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHH
Confidence 55666666677777644332 111 1456666666666666666666666666552 444444443333
No 276
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=3 Score=33.96 Aligned_cols=50 Identities=14% Similarity=0.078 Sum_probs=21.9
Q ss_pred hcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 017743 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253 (366)
Q Consensus 203 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 253 (366)
..|++.+|..+|+...... +-+....-.+..+|...|+.+.|..++..+.
T Consensus 146 ~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3444444444444444332 1122333444444444555555555544443
No 277
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.79 E-value=2.1 Score=31.86 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH-
Q 017743 86 IVTYNILLRACAQARNVDQVNALFKELHESILAPD-IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII-TFNLL- 162 (366)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l- 162 (366)
...|...++. .+.+..++|+.-|..+.+.|...- .-..-.......+.|+...|...|+++-.....|-+. -...|
T Consensus 59 gd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 3444444432 345566666666666666543210 0111112233455666666666666665443333222 11111
Q ss_pred -HHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHh
Q 017743 163 -IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219 (366)
Q Consensus 163 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 219 (366)
...+..+|.++......+-+-..+.+.-...-..|.-+-.+.|++..|.++|..+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 122445566665555555544333333333344444455556666666666665554
No 278
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.76 E-value=2.3 Score=32.23 Aligned_cols=63 Identities=11% Similarity=0.118 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILAPD--IYTYNGVMDAYGKNGMIKEMESVLSRMKS 149 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 149 (366)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+++.....+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4677888899999999999999999887643333 34466777888888888888888777654
No 279
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.73 E-value=2 Score=31.54 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=8.9
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 017743 96 CAQARNVDQVNALFKELHE 114 (366)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~ 114 (366)
+...|++.+|.++|+++..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3344455555555544433
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.53 E-value=0.25 Score=25.78 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 017743 89 YNILLRACAQARNVDQVNALFKELH 113 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~ 113 (366)
|+.|...|.+.|++++|.++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666633
No 281
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.39 E-value=0.13 Score=26.56 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=9.5
Q ss_pred CHHHHHHHHHHHHhcCChhHH
Q 017743 260 KVSTLNAMLEAYCMNGLPTEA 280 (366)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a 280 (366)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444
No 282
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.08 E-value=8.2 Score=36.62 Aligned_cols=226 Identities=12% Similarity=0.065 Sum_probs=123.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChh-------hHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 017743 96 CAQARNVDQVNALFKELHESILAPDIY-------TYNGVMD-AYGKNGMIKEMESVLSRMKSN----QCKPDIITFNLLI 163 (366)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 163 (366)
.....++++|..++.++...-..|+.. .++.+-. .....|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 445788999999998887653333222 2333322 234578999998888876553 2334566777778
Q ss_pred HHHhccCChhHHHHHHHHHHhcCCCCCHHH---HHHHH--HHHHhcCcHhHH--HHHHHHHHhC---CCC---CCHHHHH
Q 017743 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPT---FNSMI--INYGKARLQGKA--EYVFQKMTAM---KYT---PSFITYE 230 (366)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li--~~~~~~~~~~~a--~~~~~~~~~~---~~~---~~~~~~~ 230 (366)
.+..-.|++++|..+.....+..-.-+... |..+. ..+...|+...+ ...+...... ..+ +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888889999999988877765422223332 32222 224455633332 2223322211 101 1223445
Q ss_pred HHHHHhhcc-CcHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHhhhCCC----CCCHHHHHHHH
Q 017743 231 CIITMYGYC-DNVSRAREIFDELSKLGKDMKVSTLN--AMLEAYCMNGLPTEADLLFENSHNMGV----TPDSSTYKLLY 303 (366)
Q Consensus 231 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~----~p~~~~~~~l~ 303 (366)
.+..++.+. +...++..-+.-.......|-...+. .|+......|++++|...+.++..... .++..+-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 555555441 12223333333333333333222222 677888899999999988888765432 23333323333
Q ss_pred HH--HHhhchHHHHHHHHHH
Q 017743 304 KA--YTKANMKELVQKLLKR 321 (366)
Q Consensus 304 ~~--~~~~~~~~~a~~~~~~ 321 (366)
+. -...|+.+.+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 32 2456788777776665
No 283
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.74 E-value=2 Score=28.65 Aligned_cols=62 Identities=15% Similarity=0.211 Sum_probs=39.7
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 017743 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341 (366)
Q Consensus 279 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 341 (366)
+..+-++.+...++.|++......+++|.+.+++..|.++++-.+.+- .+....|..+++-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHHHH
Confidence 556667777777788888888888888888888888888888777541 12233666666544
No 284
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.73 E-value=3.9 Score=31.96 Aligned_cols=87 Identities=18% Similarity=0.129 Sum_probs=38.7
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhhchHHH
Q 017743 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD-SSTYKLLYKAYTKANMKEL 314 (366)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 314 (366)
+...++.+.+...+..............+..+...+...++++.+...+....... |+ ...+..+...+...+..+.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 254 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEE 254 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHH
Confidence 33444555555555554443221123444445555555555555555555554432 22 2233333333334444555
Q ss_pred HHHHHHHHHh
Q 017743 315 VQKLLKRMEQ 324 (366)
Q Consensus 315 a~~~~~~m~~ 324 (366)
+...+.+..+
T Consensus 255 ~~~~~~~~~~ 264 (291)
T COG0457 255 ALEALEKALE 264 (291)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 285
>PRK11906 transcriptional regulator; Provisional
Probab=92.60 E-value=6.7 Score=34.37 Aligned_cols=136 Identities=9% Similarity=0.086 Sum_probs=75.3
Q ss_pred hhH--HHHHHHHhhchH-HHHHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 017743 47 SVY--NALITAHLHTRD-KAKALAKALGYFQKMKGMERCKPN-IVTYNILLRACAQ---------ARNVDQVNALFKELH 113 (366)
Q Consensus 47 ~~~--~~ll~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 113 (366)
..| ..++.+...... .....+.|+.+|.+......+.|+ ...|..+..++.. .....+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 345 556665543111 234578888899988843444554 3344444333221 123445555566666
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 017743 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184 (366)
Q Consensus 114 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (366)
+.+ +-|..+...+..++...++++.+...|++....+. ....+|......+.-.|+.++|.+.+++..+
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 554 33555665666655666667777777777666531 1334444444445556777777777777555
No 286
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.48 E-value=3.6 Score=33.86 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESI---LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (366)
...+...++..-....+++.+...+-++.... ..|+. +-.+.++.+. .-+.++++.++..=.+.|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 33344444444444455666666555554321 11111 1122223222 2345566666666666666666666666
Q ss_pred HHHHHhccCChhHHHHHHHHHHhc
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHS 185 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~ 185 (366)
+|+.+.+.+++.+|.++.-.|+..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 666666666666666665555443
No 287
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.31 E-value=2.3 Score=28.36 Aligned_cols=47 Identities=9% Similarity=0.116 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 209 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
+..+-+..+....+.|++.+..+.+++|.+.+++..|.++|+.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444455555555566666666666666666666666666655543
No 288
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.25 E-value=3.7 Score=30.60 Aligned_cols=127 Identities=15% Similarity=0.123 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh-HHHH--HHHHHhcCCH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPN-IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT-YNGV--MDAYGKNGMI 137 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l--l~~~~~~~~~ 137 (366)
..+..++|+.-|..+.+ .|...- .-..-.+.....+.|+-..|...|+++-.....|-..- ...| .-.+...|.+
T Consensus 70 ~~~k~d~Alaaf~~lek-tg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 70 QENKTDDALAAFTDLEK-TGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HcCCchHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34457888888888876 333211 12223344556788999999999999876543333321 1111 1235678889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC
Q 017743 138 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189 (366)
Q Consensus 138 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 189 (366)
+.+....+-+...+-+.-...-..|.-+-.+.|++..|.+.|..+......|
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 9888888887766555455556677777889999999999999987643433
No 289
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.14 E-value=3.8 Score=30.51 Aligned_cols=136 Identities=13% Similarity=0.129 Sum_probs=74.5
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
.+.++.+.+.+++|+...+..++..+.+.|.+.... .+...++-+|.......+-.+. +....+.++=-+|.+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 345556666677778888888888888877765543 3444444555444443332222 2223333333333322
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 256 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
-...+..+++.+...|++-+|.++.+...... ......++.+..+.++...-..+++-..++
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 01135667777778888888888877643321 111244556666666655555555555443
No 290
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.07 E-value=3.4 Score=29.86 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=11.3
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 017743 96 CAQARNVDQVNALFKELHES 115 (366)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~ 115 (366)
+...|++++|.++|+++.+.
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHcCCHHHHHHHHHhhhcc
Confidence 44555666666666555544
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.98 E-value=0.58 Score=23.78 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 263 TLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444444455555555555444443
No 292
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.74 E-value=3.8 Score=29.66 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=22.2
Q ss_pred cCcHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 204 ARLQGKAEYVFQKMTAMKY-TPSFITYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
.++++++..++..|.-... .+...++...+ +...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 4555555555555543310 11122222222 23455555555555555554
No 293
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.47 E-value=0.59 Score=25.03 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRN 39 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 39 (366)
..+++.+...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 45789999999999999999999998764
No 294
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.31 E-value=0.76 Score=23.33 Aligned_cols=29 Identities=14% Similarity=0.050 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNS 40 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 40 (366)
.+|..+...+...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 57888999999999999999999998875
No 295
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.27 E-value=0.76 Score=23.22 Aligned_cols=29 Identities=14% Similarity=0.014 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNS 40 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 40 (366)
..|..+...+...|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46777888999999999999999998765
No 296
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.10 E-value=0.075 Score=38.62 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=25.8
Q ss_pred HHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 017743 233 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 285 (366)
Q Consensus 233 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 285 (366)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444445555555555555544433345555555555555555455554444
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.00 E-value=0.83 Score=23.06 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 299 YKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
|..+...+...|++++|++.+++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444445555555555555554443
No 298
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.97 E-value=0.53 Score=25.95 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=12.4
Q ss_pred HHHHHHhhchHHHHHHHHHHHHhC
Q 017743 302 LYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
+.++|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555555555555555543
No 299
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.83 E-value=0.31 Score=25.08 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=25.4
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHH
Q 017743 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316 (366)
Q Consensus 284 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 316 (366)
|++.++.. +-|...|..+...+...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555554 337899999999999999999986
No 300
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.79 E-value=3.9 Score=31.35 Aligned_cols=73 Identities=16% Similarity=0.071 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHhhchHHHHH
Q 017743 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKAYTKANMKELVQ 316 (366)
Q Consensus 243 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~ 316 (366)
+.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+. +-.+|+..+..|+..+.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 455555555554443334444444444444 34556666655555432 22455666666666666666665553
No 301
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.57 E-value=6.8 Score=30.49 Aligned_cols=223 Identities=12% Similarity=0.044 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 017743 65 ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES-ILAPDIYTYNGVMDAYGKNGMIKEMESV 143 (366)
Q Consensus 65 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 143 (366)
....+...+...............+......+...+.+..+...+...... ........+......+...+....+.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 345555555555432100113567777888888889999998888887752 2344556677777778888889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHH-HHhccCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC
Q 017743 144 LSRMKSNQCKPDIITFNLLID-SYGKRQAFDKMEQVFKSLMHSKE--KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220 (366)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 220 (366)
+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+......
T Consensus 118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 118 LEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 99888764433 222222333 78889999999999999855322 123344444444466788999999999998876
Q ss_pred CCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 221 KYTP-SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 221 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
. .. ....+..+...+...++++.+...+......... ....+..+...+...+..+.+...+......
T Consensus 197 ~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 197 N-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred C-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 33 4677888888888888999999999988876433 2344455555555777789999888887765
No 302
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.47 E-value=7 Score=30.43 Aligned_cols=29 Identities=24% Similarity=0.090 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 262 STLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
.+|--+...+...|+.++|..+|+-.+..
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 44555555555556666665555555443
No 303
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.23 E-value=4.2 Score=31.20 Aligned_cols=18 Identities=11% Similarity=-0.027 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhcCChh
Q 017743 261 VSTLNAMLEAYCMNGLPT 278 (366)
Q Consensus 261 ~~~~~~li~~~~~~g~~~ 278 (366)
+..+.+|+..+.+.|+++
T Consensus 178 ~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 178 PEILKSLASIYQKLKNYE 195 (203)
T ss_pred HHHHHHHHHHHHHhcchh
Confidence 333333333333333333
No 304
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.04 E-value=3.6 Score=31.93 Aligned_cols=77 Identities=9% Similarity=0.034 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG--KDMKVSTLNAMLEA 270 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~ 270 (366)
|.+..++.+.+.+...+++...+.-++.+ +.+...-..+++.+|-.|++++|..-++-.-... ..+-...|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556777888889999999888777664 4456667788899999999999988777766542 23345566666654
No 305
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.85 E-value=11 Score=31.84 Aligned_cols=204 Identities=7% Similarity=0.019 Sum_probs=115.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC---HH
Q 017743 13 IYSKLIAVMGKKGQTRLAMWLFSEMRNS--GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN---IV 87 (366)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~--g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~ 87 (366)
+|..+..+.++.|.+++++..--.-.+. ..+-...-+.+.++ +.+...+-.++.+++.+-..-....|..|. -.
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ln-lar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLN-LARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 4455556666666666654432111110 01112222222222 123333444566666665555544444442 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHH-
Q 017743 88 TYNILLRACAQARNVDQVNALFKELHESIL-----APDIYTYNGVMDAYGKNGMIKEMESVLSRMKS----NQCKPDII- 157 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~- 157 (366)
...++..++...+.++++.+.|+...+... .....++..|-..|.+..++++|.-+..+..+ .++. |..
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~ 202 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSL 202 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhH
Confidence 344566777778889999999988776421 12345788899999999999998877665533 2222 211
Q ss_pred -----HHHHHHHHHhccCChhHHHHHHHHHHh----cCCCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Q 017743 158 -----TFNLLIDSYGKRQAFDKMEQVFKSLMH----SKEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMT 218 (366)
Q Consensus 158 -----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 218 (366)
....+.-++...|....|.+.-++..+ .|-.+ -......+.+.|...|+.+.|..-|+...
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 122344556677777777766665533 33322 23345566777888999999887777643
No 306
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.70 E-value=1.2 Score=23.70 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHE 114 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 114 (366)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455666666666666666666665543
No 307
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.60 E-value=0.72 Score=23.07 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc
Q 017743 14 YSKLIAVMGKKGQTRLAMWLFSEMRNS 40 (366)
Q Consensus 14 ~~~li~~~~~~~~~~~A~~~~~~~~~~ 40 (366)
+-.+...+.+.|++++|.+.|+.+.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344667777888888888888888765
No 308
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=88.89 E-value=5.2 Score=27.94 Aligned_cols=45 Identities=11% Similarity=0.188 Sum_probs=27.0
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 280 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
..+-++.+...++.|++......+++|.+.+++..|.++|+-+..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555555666666666666666666666666666665553
No 309
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.84 E-value=12 Score=30.64 Aligned_cols=117 Identities=9% Similarity=0.075 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCChhhHHHHH-HHHHhcCCHHHH
Q 017743 66 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES----ILAPDIYTYNGVM-DAYGKNGMIKEM 140 (366)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll-~~~~~~~~~~~a 140 (366)
+++--+-+++..+..|-..-...+..+...|++.++.+.+.+...+..+. |.+.|......-+ -.|....-.++.
T Consensus 95 i~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~ 174 (412)
T COG5187 95 IEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEES 174 (412)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHH
Confidence 33333334444443344445667788888888888888888877665543 4444432222211 223333345677
Q ss_pred HHHHHHHHHCCCCCCHH----HHHHHHHHHhccCChhHHHHHHHHHHh
Q 017743 141 ESVLSRMKSNQCKPDII----TFNLLIDSYGKRQAFDKMEQVFKSLMH 184 (366)
Q Consensus 141 ~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (366)
++..+.|.+.|...+.. +|..+- +....++.+|-.++...+.
T Consensus 175 lE~~~~~iEkGgDWeRrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 175 LEVADDIIEKGGDWERRNRYKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHHhCCCHHhhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 77778888777643322 222221 2234556777776666544
No 310
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=88.25 E-value=2.1 Score=24.11 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=24.5
Q ss_pred HhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 017743 307 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALET 340 (366)
Q Consensus 307 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 340 (366)
.+.|-..++..++++|.+.|+..+...+..+++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 4556666777777778777777777777777654
No 311
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=87.87 E-value=15 Score=30.65 Aligned_cols=95 Identities=8% Similarity=0.021 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCH----H
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHE----SILAPDIYTYNGVMDAYG-KNGMIKEMESVLSRMKSNQCKPDI----I 157 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~----~ 157 (366)
..+......|++.|+.+.|.+.+.+..+ .|.+.|..-+..-+..+. ...-+.+-++..+.+.+.|...+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3455556667777777777666655433 344444444333333222 222233444444445555543332 1
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHH
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLM 183 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 183 (366)
+|..+- +....++.+|-.+|-...
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 222221 233455666666655543
No 312
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.74 E-value=6.1 Score=26.15 Aligned_cols=44 Identities=9% Similarity=0.138 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 017743 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253 (366)
Q Consensus 210 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 253 (366)
+.+-+..+......|++.+..+.+++|-+.+++..|.++|+.++
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444555555555555555555555555554444
No 313
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.51 E-value=14 Score=32.62 Aligned_cols=84 Identities=14% Similarity=-0.000 Sum_probs=37.3
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHH
Q 017743 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 317 (366)
..|.++.+.+.+...... +.....+...++....+.|++++|..+...|....+. +..............|-++++..
T Consensus 335 ~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 335 HLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHH
Confidence 345555555444433322 1112334444555555555555555555555444433 33333333333334444555555
Q ss_pred HHHHHH
Q 017743 318 LLKRME 323 (366)
Q Consensus 318 ~~~~m~ 323 (366)
.|+++.
T Consensus 413 ~wk~~~ 418 (831)
T PRK15180 413 YWKRVL 418 (831)
T ss_pred HHHHHh
Confidence 554443
No 314
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=87.29 E-value=9.2 Score=27.70 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHhhch-HHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 017743 295 DSSTYKLLYKAYTKANM-KELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344 (366)
Q Consensus 295 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 344 (366)
+...|..++.+.....- .--+..+|+-|.+.++.++...|..+|+++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 34455555555544433 233455555555555666666666666666554
No 315
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.25 E-value=13 Score=33.77 Aligned_cols=152 Identities=13% Similarity=0.058 Sum_probs=91.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHH
Q 017743 96 CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 175 (366)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 175 (366)
..-.|+++.|..++-.+. ....+.+...+.+.|..++|+++- +|.... .....+.|+++.|
T Consensus 596 ~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA 656 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIA 656 (794)
T ss_pred HhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHH
Confidence 334577777766544332 233455666667777777776542 222111 2234466778888
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
.++..+. .+..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+-+....+-....+.
T Consensus 657 ~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 657 FDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred HHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 7766554 2556688888888888888888877776553 445555666667766555555555555
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 256 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 256 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
|.. | .-.-+|...|+++++.+++..-
T Consensus 722 g~~-N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 722 GKN-N-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ccc-c-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 532 2 2334556678888888777654
No 316
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=87.04 E-value=14 Score=29.99 Aligned_cols=89 Identities=15% Similarity=0.111 Sum_probs=56.5
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHh----
Q 017743 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY---- 236 (366)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---- 236 (366)
.=|+++...++|.++....-+--+.-.+........-|-.|.+.+.+..+.++-..-....-.-+...|..++..|
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 3467788888888887665554333223345556666777888888888887777666542222233466555544
Q ss_pred -hccCcHHHHHHHH
Q 017743 237 -GYCDNVSRAREIF 249 (366)
Q Consensus 237 -~~~~~~~~a~~~~ 249 (366)
.-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 4468888887776
No 317
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.97 E-value=5.2 Score=33.39 Aligned_cols=93 Identities=17% Similarity=0.021 Sum_probs=58.3
Q ss_pred HHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 017743 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278 (366)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 278 (366)
.-|.+.|.+++|+..|....... +-+.+++..-..+|.+..++..|..-.......+-. -...|..-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhHH
Confidence 45778888888888888777653 237777777778888888888777666665554211 1233444444444455566
Q ss_pred HHHHHHHHhhhCCCCCC
Q 017743 279 EADLLFENSHNMGVTPD 295 (366)
Q Consensus 279 ~a~~~~~~~~~~~~~p~ 295 (366)
+|.+=++..++ +.|+
T Consensus 183 EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 183 EAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHhHHHHHh--hCcc
Confidence 66655555555 3455
No 318
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.88 E-value=21 Score=31.50 Aligned_cols=125 Identities=6% Similarity=-0.033 Sum_probs=81.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChh
Q 017743 94 RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173 (366)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 173 (366)
.-....|++-.|-+-+...++. .+.++.............|+++.+...+...... +.....+...++....+.|+++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 3344566766665544443332 1223333333344566789999999988876554 3445667788888899999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
.|..+-.-|+...+. +...........-..|-++++.-.|+++...+
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999998888776554 44444433344455678899999999887765
No 319
>PRK09687 putative lyase; Provisional
Probab=86.82 E-value=16 Score=30.10 Aligned_cols=236 Identities=12% Similarity=0.038 Sum_probs=144.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMI----KEMESVLSRMKSNQCKPDIIT 158 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 158 (366)
.+|.......+.++...|..+ +...+..+... +|...-...+.++.+.|+. +++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQD-VFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcch-HHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 466667777777777777533 33444444433 3556666667777777763 4677777776443 456666
Q ss_pred HHHHHHHHhccCCh-----hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017743 159 FNLLIDSYGKRQAF-----DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233 (366)
Q Consensus 159 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 233 (366)
-...+.++...+.. ..+...+.... ..++..+-...+.++.+.++. .+...+-.+.+ .++..+-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHHH
Confidence 66666666655422 22333333332 234556666777777777764 56666666655 34555555555
Q ss_pred HHhhccC-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchH
Q 017743 234 TMYGYCD-NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 312 (366)
Q Consensus 234 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 312 (366)
.++...+ +...+...+..+.. .++..+-...+.++.+.|+. .|...+-...+.+ + .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 5665543 23456666655554 34677778888888888874 5666655555543 2 245677888888885
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHhhc
Q 017743 313 ELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343 (366)
Q Consensus 313 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 343 (366)
+|...+..+.+.. ||..+-...+.+|.+
T Consensus 252 -~a~p~L~~l~~~~--~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 -TLLPVLDTLLYKF--DDNEIITKAIDKLKR 279 (280)
T ss_pred -hHHHHHHHHHhhC--CChhHHHHHHHHHhc
Confidence 6888888888633 578887777777754
No 320
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.79 E-value=0.25 Score=35.91 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=28.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHH
Q 017743 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180 (366)
Q Consensus 128 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 180 (366)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444555555555556655554444455555666666666655555555444
No 321
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=86.60 E-value=13 Score=30.25 Aligned_cols=87 Identities=13% Similarity=0.056 Sum_probs=41.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----
Q 017743 93 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK---- 168 (366)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 168 (366)
|.+++..+++.++....-+..+.--+....+...-|-.|.+.+.+..+.++-..-.+..-.-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5556666666665555444433221222333344444555666666655555555443222223334444444332
Q ss_pred -cCChhHHHHHH
Q 017743 169 -RQAFDKMEQVF 179 (366)
Q Consensus 169 -~~~~~~a~~~~ 179 (366)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 45555555544
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.70 E-value=40 Score=33.55 Aligned_cols=80 Identities=9% Similarity=0.083 Sum_probs=42.4
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLP--TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 240 (366)
+.+|..+|+|.+|..+..++.. ..+.. +-..|+.-+...+++-+|-++..+.... | .-.+..+++..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHh
Confidence 3445555555555555554421 11111 1245666667777777777776665532 2 22334455666
Q ss_pred cHHHHHHHHHHHH
Q 017743 241 NVSRAREIFDELS 253 (366)
Q Consensus 241 ~~~~a~~~~~~~~ 253 (366)
.+++|.++.....
T Consensus 1041 ~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1041 EWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHhcc
Confidence 6777776655443
No 323
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.39 E-value=8.9 Score=29.89 Aligned_cols=76 Identities=11% Similarity=-0.022 Sum_probs=54.3
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 017743 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK--YTPSFITYECIITM 235 (366)
Q Consensus 159 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 235 (366)
....++.+.+.+...+++...+.-.+.+ +.|...-..+++.++-.|++++|..-++..-+.. ..+....|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4455667778888999998888777753 3466667778888999999999988777665542 23445667777764
No 324
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.32 E-value=3.2 Score=20.86 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 298 TYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
+|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666667777777777777776654
No 325
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.21 E-value=1.6 Score=20.67 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 017743 13 IYSKLIAVMGKKGQTRLAMWLFS 35 (366)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~ 35 (366)
+...+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44567788889999999988875
No 326
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.17 E-value=2.4 Score=23.39 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=22.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC
Q 017743 16 KLIAVMGKKGQTRLAMWLFSEMRNSG 41 (366)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~g 41 (366)
.+..+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 47889999999999999999998643
No 327
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.14 E-value=3.3 Score=20.51 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 299 YKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
+-.+..++.+.|++++|.+.|+++.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345667778888999999988888763
No 328
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.95 E-value=3.3 Score=20.79 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNS 40 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 40 (366)
.+|..+...+...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46778888999999999999999988763
No 329
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.86 E-value=15 Score=27.78 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=25.0
Q ss_pred hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCC
Q 017743 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 327 (366)
Q Consensus 277 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 327 (366)
+++|...|+...+ ..|+..+|..-+....+ |-++..++.+++.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~k------ap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAAK------APELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHT------HHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHHh------hHHHHHHHHHHHh
Confidence 4455555555555 36788888877766543 5556666666554
No 330
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.47 E-value=41 Score=32.65 Aligned_cols=28 Identities=18% Similarity=0.453 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 017743 123 TYNGVMDAYGKNGMIKEMESVLSRMKSN 150 (366)
Q Consensus 123 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 150 (366)
-|..|+..|...|+.++|+++|.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 3677778888888888888888887653
No 331
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.90 E-value=8.6 Score=32.17 Aligned_cols=91 Identities=13% Similarity=0.107 Sum_probs=65.2
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHSKEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 241 (366)
..-|.+.|.+++|++.|...+.. .| +..++..-..+|.+...+..|+.=-...+..+ ..-...|+.-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 35699999999999999988774 44 88888888999999999988776666555432 2223345555555555667
Q ss_pred HHHHHHHHHHHHhCC
Q 017743 242 VSRAREIFDELSKLG 256 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~ 256 (366)
..+|.+-++...+..
T Consensus 181 ~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 181 NMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHhHHHHHhhC
Confidence 777777777776653
No 332
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=83.41 E-value=27 Score=29.74 Aligned_cols=67 Identities=12% Similarity=-0.064 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC---CHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP---SFITYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 189 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
....+|..+...+.+.|.++.|...+..+...+... .+...-.-...+-..|+..+|...++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455678888999999999999999999988754211 3334444455566788999999999888873
No 333
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.39 E-value=38 Score=31.32 Aligned_cols=188 Identities=15% Similarity=0.074 Sum_probs=95.1
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc-hHHHHHHHHHHHHHHHHhcC---CCCCCCHHHHHHHHHHHHhcC--
Q 017743 27 TRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT-RDKAKALAKALGYFQKMKGM---ERCKPNIVTYNILLRACAQAR-- 100 (366)
Q Consensus 27 ~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~-~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~-- 100 (366)
...|.+.++...+.|. ...-..+...+... .....+.+.|+.+|....+. .-..-.......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 4567777777776552 22222222222221 12445578888888777541 000112334555666666532
Q ss_pred ---CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCChhH
Q 017743 101 ---NVDQVNALFKELHESILAPDIYTYNGVMDAYGK-NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY--GKRQAFDK 174 (366)
Q Consensus 101 ---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~ 174 (366)
+...|..++...-+.|. |+...+...+..... ..+...|.++|....+.|.. ....+..++... ....+...
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence 56668888877777652 343333222222211 23567888888888777643 222222222111 23456777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
|..++++..+.| .|....-...+..+.. +.++.+.-.+..+.+.+
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 888888877776 2222222222233333 66666666665555554
No 334
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.36 E-value=33 Score=30.70 Aligned_cols=165 Identities=13% Similarity=0.113 Sum_probs=66.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 017743 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199 (366)
Q Consensus 120 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 199 (366)
|.....+++..+..+..+.-+..+..+|...| .+...|..++.+|..+ ..+.-..+|+++.+... .|+..-..+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 33344444444444444444444444444432 2344444444444444 33444444444444321 12222223333
Q ss_pred HHHhcCcHhHHHHHHHHHHhCCCC-----CCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 017743 200 NYGKARLQGKAEYVFQKMTAMKYT-----PSFITYECIITMYGYCDNVSRAREIFDELSKL-GKDMKVSTLNAMLEAYCM 273 (366)
Q Consensus 200 ~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~ 273 (366)
.|.+ ++...+..+|.+....-++ .-...|..+.... ..+.+....+...+... |...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3322 4444444444444322111 0012333333211 23344444444444332 222223334444445555
Q ss_pred cCChhHHHHHHHHhhhCC
Q 017743 274 NGLPTEADLLFENSHNMG 291 (366)
Q Consensus 274 ~g~~~~a~~~~~~~~~~~ 291 (366)
..++++|++++..+.+++
T Consensus 218 ~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 218 NENWTEAIRILKHILEHD 235 (711)
T ss_pred ccCHHHHHHHHHHHhhhc
Confidence 555555555555555443
No 335
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.69 E-value=36 Score=30.54 Aligned_cols=181 Identities=13% Similarity=0.082 Sum_probs=128.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (366)
+.|..+.-+++..+..+..+.-+..+..+|+..| .+...+..++.+|... ..++-..+|+.+.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 5677788899999999999999999999999875 4778899999999988 677888999988887543 44444455
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC-CCCCCHHHHHHHHHHh
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHSKEKP-----TLPTFNSMIINYGKARLQGKAEYVFQKMTAM-KYTPSFITYECIITMY 236 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 236 (366)
...|-+ ++...+...|.++...-++. -...|..+...- ..+.+....+...+... |...-...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 555544 88888888888887652221 112455444321 35667777777777643 4344456677777888
Q ss_pred hccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017743 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271 (366)
Q Consensus 237 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 271 (366)
....++++|++++..+.+.+-+ |.-.-..++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 8899999999999988877543 454444555443
No 336
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.46 E-value=20 Score=27.61 Aligned_cols=92 Identities=16% Similarity=-0.050 Sum_probs=64.7
Q ss_pred HHHHhcCcHhHHHHHHHHHHhCCCCCC----HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 017743 199 INYGKARLQGKAEYVFQKMTAMKYTPS----FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274 (366)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 274 (366)
.-+.+.|++++|..-|...+....... ...|..-..++.+.+.++.|+.-....++.++. .......-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 446788999999999999888742222 233444456777888888888888777776543 233333445578888
Q ss_pred CChhHHHHHHHHhhhCC
Q 017743 275 GLPTEADLLFENSHNMG 291 (366)
Q Consensus 275 g~~~~a~~~~~~~~~~~ 291 (366)
..+++|++=|..+.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 88999998888888764
No 337
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=82.31 E-value=13 Score=26.12 Aligned_cols=45 Identities=16% Similarity=0.036 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 245 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
..+.++.+...++.|++.....-+.+|.+.+++..|.++|+-++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334445555556666666666666666666666666666666554
No 338
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=82.25 E-value=16 Score=33.73 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=0.0
Q ss_pred hhchHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 017743 308 KANMKELVQKLLKRMEQNGIVPNKRFFLEALE 339 (366)
Q Consensus 308 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 339 (366)
+.|++.+|.+.+-.+.+.++.|...-..-+.+
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp --------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 45778888888888888888776654444433
No 339
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=82.07 E-value=22 Score=27.81 Aligned_cols=161 Identities=16% Similarity=0.074 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC-CCCCHHHHHHHHH
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSFITYECIIT 234 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~ 234 (366)
+.+||.+.--+...|+++.|.+.|+...+..+.-+-...|.-|.. .-.|++.-|.+-+...-+.+ -.|-...|-.+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 567777777788888888888888888775444444444433332 23577777776665554443 2233334444433
Q ss_pred HhhccCcHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-------HHHHHHHHHHH
Q 017743 235 MYGYCDNVSRAREIF-DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD-------SSTYKLLYKAY 306 (366)
Q Consensus 235 ~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-------~~~~~~l~~~~ 306 (366)
..-++.+|..-+ ++.... |..-|...|-.|.- |++. ...+++.+... -.-+ ..||-.+..-+
T Consensus 178 ---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHH
Confidence 234555555433 333332 44445444433322 2211 12233333221 1111 46788899999
Q ss_pred HhhchHHHHHHHHHHHHhCCC
Q 017743 307 TKANMKELVQKLLKRMEQNGI 327 (366)
Q Consensus 307 ~~~~~~~~a~~~~~~m~~~g~ 327 (366)
...|+.++|..+|+-.+...+
T Consensus 248 l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 248 LSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hccccHHHHHHHHHHHHHHhH
Confidence 999999999999999887654
No 340
>PHA02875 ankyrin repeat protein; Provisional
Probab=81.49 E-value=15 Score=32.35 Aligned_cols=191 Identities=15% Similarity=0.062 Sum_probs=85.0
Q ss_pred CCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 017743 80 ERCKPNIVT--YNILLRACAQARNVDQVNALFKELHESILAPDIY--TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 155 (366)
Q Consensus 80 ~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 155 (366)
.|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++ .|...+
T Consensus 24 ~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~ 95 (413)
T PHA02875 24 IGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LGKFAD 95 (413)
T ss_pred CCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cCCccc
Confidence 345555432 334555666777765 334445556544432 12334555666777766555543 332111
Q ss_pred HH---HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC---H
Q 017743 156 II---TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP---TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS---F 226 (366)
Q Consensus 156 ~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~ 226 (366)
.. .-.+.+...+..|+.+ +++.+.+.|..|+.. -.+. +...+..|+.+.+..+ .+.|..++ .
T Consensus 96 ~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tp-Lh~A~~~~~~~~v~~L----l~~g~~~~~~d~ 166 (413)
T PHA02875 96 DVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSP-LHLAVMMGDIKGIELL----IDHKACLDIEDC 166 (413)
T ss_pred ccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHH----HhcCCCCCCCCC
Confidence 10 0112333344455554 344444555544322 1222 2333455665544333 33443322 2
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 017743 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST---LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296 (366)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 296 (366)
...+.|.. .+..|+.+ +.+.+.+.|..++... ...++...+..|+.+ +.+.+.+.|..++.
T Consensus 167 ~g~TpL~~-A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 167 CGCTPLII-AMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred CCCCHHHH-HHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 22233332 33445544 3444555555554322 123444445556554 33444556666654
No 341
>PRK09687 putative lyase; Provisional
Probab=81.05 E-value=30 Score=28.59 Aligned_cols=235 Identities=9% Similarity=-0.042 Sum_probs=145.6
Q ss_pred CCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCC
Q 017743 43 RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV----DQVNALFKELHESILA 118 (366)
Q Consensus 43 ~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~ 118 (366)
.+|.......+.++...+. +++...+..+.. .+|...-...+.++...|+. .++...+..+... .
T Consensus 34 d~d~~vR~~A~~aL~~~~~-----~~~~~~l~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D 102 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-----QDVFRLAIELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--D 102 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-----chHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--C
Confidence 4577677677777654432 344444444443 45666666777778887763 5677777766443 3
Q ss_pred CChhhHHHHHHHHHhcCCH-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHH
Q 017743 119 PDIYTYNGVMDAYGKNGMI-----KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 193 (366)
Q Consensus 119 ~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 193 (366)
++..+-...+.++...+.. ..+...+..... .++..+-...+.++.+.++. .+...+-.+... ++...
T Consensus 103 ~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~V 175 (280)
T PRK09687 103 KSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDV 175 (280)
T ss_pred CCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHH
Confidence 5666666666666554321 233444444333 34667777888888888874 566666666542 45555
Q ss_pred HHHHHHHHHhcC-cHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 017743 194 FNSMIINYGKAR-LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272 (366)
Q Consensus 194 ~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 272 (366)
-...+.++.+.+ ....+...+..+.. .++..+-...+.++.+.++. .+...+-...+.+ + .....+.++.
T Consensus 176 R~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg 246 (280)
T PRK09687 176 RNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAG 246 (280)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHH
Confidence 555666666543 23456666666664 56777788888888888884 5555555555543 2 2346778888
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 017743 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307 (366)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 307 (366)
..|.. +|...+..+.+. .||..+-...+.+|.
T Consensus 247 ~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 247 ELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred hcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 88885 688888887764 357776666665553
No 342
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.02 E-value=22 Score=26.92 Aligned_cols=61 Identities=21% Similarity=0.287 Sum_probs=34.1
Q ss_pred HHHHHHHhhhCCCCCC-HHHHHHHHHHHHhhc-----------hHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 017743 280 ADLLFENSHNMGVTPD-SSTYKLLYKAYTKAN-----------MKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 344 (366)
Q Consensus 280 a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~-----------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 344 (366)
|+.-|++.+. +.|+ ..++..+-.++...+ .++.|...|++..+ ..|+..+|+.-|+...+.
T Consensus 54 AisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~ka 126 (186)
T PF06552_consen 54 AISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAKA 126 (186)
T ss_dssp HHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHTH
T ss_pred HHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHhh
Confidence 3333444443 2344 345555555554433 25666677777666 569999999888877543
No 343
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.24 E-value=27 Score=31.88 Aligned_cols=131 Identities=17% Similarity=0.201 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhh-HHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 017743 13 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSV-YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI 91 (366)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~-~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 91 (366)
.-+.++..+-++|-.++|+++- +|... +... . +.|+++.|.++..+. .+..-|..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~rFela----l----~lgrl~iA~~la~e~-------~s~~Kw~~ 671 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQRFELA----L----KLGRLDIAFDLAVEA-------NSEVKWRQ 671 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhhhhhhh----h----hcCcHHHHHHHHHhh-------cchHHHHH
Confidence 4566778888888888887752 33221 2222 2 455688888877664 36677999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 017743 92 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171 (366)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (366)
|.++..+.+++..|.+.|..... |..|+-.+...|+.+....+-....+.|.. |.. .-+|...|+
T Consensus 672 Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N~A-----F~~~~l~g~ 736 (794)
T KOG0276|consen 672 LGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-NLA-----FLAYFLSGD 736 (794)
T ss_pred HHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-chH-----HHHHHHcCC
Confidence 99999999999999999987654 445677777788887777777777776643 332 345667899
Q ss_pred hhHHHHHHHHH
Q 017743 172 FDKMEQVFKSL 182 (366)
Q Consensus 172 ~~~a~~~~~~~ 182 (366)
++++.+++.+-
T Consensus 737 ~~~C~~lLi~t 747 (794)
T KOG0276|consen 737 YEECLELLIST 747 (794)
T ss_pred HHHHHHHHHhc
Confidence 99998887654
No 344
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.22 E-value=49 Score=30.57 Aligned_cols=180 Identities=12% Similarity=0.070 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHH----H-HHhcCCHHHHHHHHHHHHH-------cCCCCChhhHHHHHHHHHh
Q 017743 66 LAKALGYFQKMKGMERCKPNIVTYNILLR----A-CAQARNVDQVNALFKELHE-------SILAPDIYTYNGVMDAYGK 133 (366)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~ 133 (366)
...|.++++...+.. +......+.. + +....+.+.|+.+|+.+.+ .| .......+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 568888888887632 3333333322 2 4456789999999999877 44 34466677777776
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hcC
Q 017743 134 NG-----MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG--KAR 205 (366)
Q Consensus 134 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~ 205 (366)
.. +.+.|..++....+.|.+ +....-..+..... ..+...|.++|....+.|.. ....+..++.... ...
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVER 378 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCC
Confidence 43 667899999999888743 55444433333333 35788999999999887643 2222222221111 235
Q ss_pred cHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 017743 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 206 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
+...|..++++.-+.| .|...--...+..+.. ++.+.+.-.+..+...+
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 7888999999998887 4443333333333443 66666666665555544
No 345
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.14 E-value=11 Score=23.93 Aligned_cols=46 Identities=7% Similarity=-0.082 Sum_probs=27.5
Q ss_pred hcCChhHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhhchHHHHHHH
Q 017743 273 MNGLPTEADLLFENSHNMGVTPD--SSTYKLLYKAYTKANMKELVQKL 318 (366)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~ 318 (366)
..++.++|+..|....+.-..|. -.++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777766665432222 23556667777777777766654
No 346
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.91 E-value=26 Score=27.11 Aligned_cols=61 Identities=13% Similarity=-0.004 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 150 (366)
|..-..++.+.+.++.|+.-....++.+.. .......-..+|.+...+++|+.=|.++.+.
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 444445556666666666666666555311 2222233344566666667777666666655
No 347
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.15 E-value=35 Score=28.15 Aligned_cols=72 Identities=19% Similarity=0.164 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh-----CCCCCChhHH
Q 017743 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ-----NGIVPNKRFF 334 (366)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~~~ 334 (366)
.+++.....|..+|.+.+|.++.+.....+ +.+...+..+++.+...|+--.+.+-++++.+ .|+..+...+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 345666778899999999999999988876 45788889999999999998888888777643 3777666544
No 348
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.92 E-value=35 Score=28.03 Aligned_cols=127 Identities=10% Similarity=0.069 Sum_probs=73.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHH-------HHHHHHhhchHHHHH---HHHHHHHHHHHhcCCCCCCCH
Q 017743 17 LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYN-------ALITAHLHTRDKAKA---LAKALGYFQKMKGMERCKPNI 86 (366)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~-------~ll~~~~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~ 86 (366)
+.+-..+.+++++|...|..+...|+..|..+.| -+...|...|+...- +....+.+..... +...
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk----~k~~ 84 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK----PKIT 84 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc----hhHH
Confidence 5566778899999999999999999887776544 345555555432211 1122222222221 2334
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 017743 87 VTYNILLRACAQA-RNVDQVNALFKELHESILAPDI-----YTYNGVMDAYGKNGMIKEMESVLSRM 147 (366)
Q Consensus 87 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~ 147 (366)
....+++..+-.. ..++..+.+.....+....-+. ..-..++..+.+.|.+.+|+.+...+
T Consensus 85 KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 85 KIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4555666655443 3355555555555443211111 11235677888999999988765543
No 349
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.64 E-value=22 Score=32.35 Aligned_cols=150 Identities=11% Similarity=0.033 Sum_probs=91.2
Q ss_pred CChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 017743 44 PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT 123 (366)
Q Consensus 44 p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 123 (366)
|+..+...++.-.... .-...+-+-.++..|.. .+.|--...|...-.....|+...|...+............+.
T Consensus 569 ~~~~~~k~~~~r~~~~--~i~e~e~~~~~~~~~~~--~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 569 PDDHARKILLSRINNY--TIPEEEIGSFLFHAINK--PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred chHHHHHHHHHHHhcc--cCcHHHHHHHHHHHhcC--CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 5555555555433211 11123344455555552 2233333333333334457888888888877765543334455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 017743 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199 (366)
Q Consensus 124 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 199 (366)
...|.....+.|....|..++.+..... ...+-++..+..++....+++.|++.|+...+.. +.+...-+.+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKL 718 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHH
Confidence 6677777888888888888888877654 3355667778888888899999999999888753 224444444433
No 350
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=78.59 E-value=6.3 Score=32.35 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=26.6
Q ss_pred CCHHH-HHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 017743 294 PDSST-YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338 (366)
Q Consensus 294 p~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 338 (366)
||..+ |+..|+...+.|++++|+.++++..+.|+.--..+|...+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 44443 3466666666666666666666666666655555554444
No 351
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=78.28 E-value=9.9 Score=21.40 Aligned_cols=37 Identities=14% Similarity=0.349 Sum_probs=29.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 017743 18 IAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT 54 (366)
Q Consensus 18 i~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 54 (366)
+....+.|-..++..+++.|.+.|...+...+..++.
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3445678888899999999999888888888877765
No 352
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=77.53 E-value=39 Score=27.83 Aligned_cols=64 Identities=3% Similarity=0.008 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 017743 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKL-GKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286 (366)
Q Consensus 223 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (366)
.++..+...++..++..+++..-.++|+..... ++.-|...|..+|......|+..-..++.++
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 455556666666666666666666666655544 4444566666666666666665555555443
No 353
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.51 E-value=13 Score=24.63 Aligned_cols=16 Identities=13% Similarity=0.040 Sum_probs=8.6
Q ss_pred HhcCChhHHHHHHHHH
Q 017743 22 GKKGQTRLAMWLFSEM 37 (366)
Q Consensus 22 ~~~~~~~~A~~~~~~~ 37 (366)
.+.|++..|.+.+...
T Consensus 9 ~~~~dy~~A~d~L~~~ 24 (94)
T PF12862_consen 9 LRSGDYSEALDALHRY 24 (94)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 3556666665544444
No 354
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=74.69 E-value=12 Score=22.43 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=9.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 017743 127 VMDAYGKNGMIKEMESVLSRM 147 (366)
Q Consensus 127 ll~~~~~~~~~~~a~~~~~~~ 147 (366)
++.++...|++++|.+++.++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444443
No 355
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.53 E-value=7.7 Score=18.26 Aligned_cols=28 Identities=14% Similarity=0.014 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRN 39 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~ 39 (366)
.+|..+...+...|++++|...|+...+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3566777788888888888888877765
No 356
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.35 E-value=22 Score=32.29 Aligned_cols=101 Identities=13% Similarity=0.009 Sum_probs=61.8
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHH
Q 017743 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247 (366)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 247 (366)
-.|+...|.+.+.......+.-.-.....+.....+.|....|-.++.+..... ...+-++-.+.+++....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 356777777777666543322222334445555566666777777776666554 3344566677777777888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH
Q 017743 248 IFDELSKLGKDMKVSTLNAMLEA 270 (366)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~li~~ 270 (366)
.|+...+...+ +...-+.|...
T Consensus 698 ~~~~a~~~~~~-~~~~~~~l~~i 719 (886)
T KOG4507|consen 698 AFRQALKLTTK-CPECENSLKLI 719 (886)
T ss_pred HHHHHHhcCCC-ChhhHHHHHHH
Confidence 88887776544 45555554443
No 357
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=74.09 E-value=43 Score=27.80 Aligned_cols=43 Identities=12% Similarity=0.265 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 017743 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (366)
++|+.+.+.++.|...++..+.-.+...=.+.....+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 3444444445555554444444444444444555555555443
No 358
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.01 E-value=49 Score=27.32 Aligned_cols=195 Identities=9% Similarity=0.084 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh------cC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 017743 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGK------NG-----MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 170 (366)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~------~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 170 (366)
.+.-.+..++..+.-.+....++...+.++.. +| ...+|.++|.-+.++.- ...+-..++.++-...
T Consensus 103 ~ekLnraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~ 180 (361)
T COG3947 103 PEKLNRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKG--KEVTSWEAIEALWPEK 180 (361)
T ss_pred HHHHHHHHHHHhccccccchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcC--CcccHhHHHHHHcccc
Confidence 34444444444443223344455555555541 11 23578888888776532 2333445566666666
Q ss_pred ChhHHHHHHHH-------HHh-------------------cCCCCCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHhCCCC
Q 017743 171 AFDKMEQVFKS-------LMH-------------------SKEKPTLPTFNSMIINYGKA-RLQGKAEYVFQKMTAMKYT 223 (366)
Q Consensus 171 ~~~~a~~~~~~-------~~~-------------------~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~ 223 (366)
+...|...+.. ++. .++..|..-|-..+...... -.++++.++.......-++
T Consensus 181 D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~ 260 (361)
T COG3947 181 DEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLP 260 (361)
T ss_pred chhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCC
Confidence 66665554432 211 01233455555554443322 2345555555544221110
Q ss_pred -------CC---------HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 224 -------PS---------FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 224 -------~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
-| ..++....+.|..+|.+.+|.++.+.....++ .+...+-.++..+...|+--.+.+-++.+
T Consensus 261 e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 261 EADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 01 12335566788899999999999999998764 47888999999999999988887777766
Q ss_pred h-----hCCCCCCHHHH
Q 017743 288 H-----NMGVTPDSSTY 299 (366)
Q Consensus 288 ~-----~~~~~p~~~~~ 299 (366)
. +.|+..+...+
T Consensus 340 a~vleaelgi~vddsie 356 (361)
T COG3947 340 AEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHhCCCcchhHH
Confidence 4 34666555443
No 359
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=73.34 E-value=22 Score=27.36 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 293 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.|+..+|..++.++...|+.++|..+..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666666666666666666666666655554
No 360
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=71.62 E-value=19 Score=21.88 Aligned_cols=51 Identities=10% Similarity=0.100 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhc
Q 017743 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310 (366)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 310 (366)
|....++.++..+++..-.+.++..+.++...|. .+..+|..-++.+++..
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 3445556666666665556666666666665553 35555555555555433
No 361
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=70.64 E-value=45 Score=25.39 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=11.9
Q ss_pred HHHHhcCChhHHHHHHHHhhh
Q 017743 269 EAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~ 289 (366)
-.|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345556666666666655544
No 362
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=70.63 E-value=65 Score=27.29 Aligned_cols=118 Identities=9% Similarity=0.030 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCChhHHHHHH
Q 017743 208 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM---NGLPTEADLLF 284 (366)
Q Consensus 208 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~ 284 (366)
+.-+.++++..+.+ +.+......++..+.+..+.+...+-|+.+....+. +...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34455566655553 344556666666666666666666677776665433 56666666655444 22344555555
Q ss_pred HHhhhC------CC------CCC--H---HHHHHHHHHHHhhchHHHHHHHHHHHHhCCC
Q 017743 285 ENSHNM------GV------TPD--S---STYKLLYKAYTKANMKELVQKLLKRMEQNGI 327 (366)
Q Consensus 285 ~~~~~~------~~------~p~--~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 327 (366)
.+..+. +. .++ . ..+..+...+...|..+.|..+++.+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 443321 11 111 1 2233344445678999999999999998765
No 363
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=70.62 E-value=46 Score=30.99 Aligned_cols=75 Identities=8% Similarity=-0.056 Sum_probs=45.4
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHhCC--CCCCHHHHHHHHHHhhccCcHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 017743 196 SMIINYGKARLQGKAEYVFQKMTAMK--YTPSFITYECIITMYGYCDNVS------RAREIFDELSKLGKDMKVSTLNAM 267 (366)
Q Consensus 196 ~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 267 (366)
+++.+|...|++..+.++++.....+ -+.-...||..++.+.+.|.++ .|.+.++... +..|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67788888888888888888777542 2222456777777777777643 2333333322 33466667666
Q ss_pred HHHHHh
Q 017743 268 LEAYCM 273 (366)
Q Consensus 268 i~~~~~ 273 (366)
+++-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 655443
No 364
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.55 E-value=32 Score=26.44 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 258 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
.|++.+|..++.++...|+.++|.+...++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666677777777777777777766666655
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.37 E-value=17 Score=23.11 Aligned_cols=15 Identities=7% Similarity=-0.100 Sum_probs=6.0
Q ss_pred HHHHHHhhccCcHHH
Q 017743 230 ECIITMYGYCDNVSR 244 (366)
Q Consensus 230 ~~l~~~~~~~~~~~~ 244 (366)
..++.+++..|++.+
T Consensus 47 G~l~qA~~e~Gkyr~ 61 (80)
T PF10579_consen 47 GYLIQAHMEWGKYRE 61 (80)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 366
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=70.20 E-value=13 Score=30.64 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=31.2
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 017743 83 KPNIV-TYNILLRACAQARNVDQVNALFKELHESILAPDIYTY 124 (366)
Q Consensus 83 ~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 124 (366)
.|+.. .|+..|....+.||+++|++++++..+.|..--..+|
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 34544 4678888888899999999999998888866444444
No 367
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=69.65 E-value=39 Score=24.61 Aligned_cols=47 Identities=21% Similarity=0.152 Sum_probs=20.9
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHH
Q 017743 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 298 (366)
Q Consensus 251 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 298 (366)
.+.+.|.+++. --..++..+...++.-.|.++++.+.+.++..+..|
T Consensus 11 ~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 11 RLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 33444444322 233344444444444555555555555444443333
No 368
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=68.95 E-value=1e+02 Score=28.75 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=20.2
Q ss_pred cCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 017743 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSE 36 (366)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 36 (366)
..++.-|+ .+..+.-+|.+++|.+++..
T Consensus 146 ~~~p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 146 EHDPDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp SGSHHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred ccchhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 33466676 68888899999999999844
No 369
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=68.64 E-value=71 Score=26.90 Aligned_cols=136 Identities=13% Similarity=0.088 Sum_probs=80.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC
Q 017743 80 ERCKPNIVTYNILLRACAQARNVDQVNALFKELHES-ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS----NQCKP 154 (366)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~ 154 (366)
..++.|...++.|... +..++++-.+..+...+. |-.--...+......|++.|+.+.|++.+....+ -|.+.
T Consensus 64 ~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~ki 141 (393)
T KOG0687|consen 64 LVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKI 141 (393)
T ss_pred cceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccch
Confidence 4456666666666543 223344444444444433 2222334566677889999999999988876543 46677
Q ss_pred CHHHHHHHHH-HHhccCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCcHhHHHHHHHHHHh
Q 017743 155 DIITFNLLID-SYGKRQAFDKMEQVFKSLMHSKEKPT----LPTFNSMIINYGKARLQGKAEYVFQKMTA 219 (366)
Q Consensus 155 ~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 219 (366)
|+..+..-+. .|....-..+-++..+.+.+.|..-+ ..+|..+- |....++.+|..+|-....
T Consensus 142 DVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 142 DVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 7766654443 34444445556666666666665433 23444332 3445788888888877654
No 370
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.51 E-value=33 Score=23.06 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=24.6
Q ss_pred HHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
.+...|++++|..+.+.. ..||...|.++-. .+.|..+.+..-+.++...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344555555555554444 3455555544332 24444444444444444444
No 371
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=68.22 E-value=19 Score=21.65 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017743 84 PNIVTYNILLRACAQARNVDQVNALFKELHE 114 (366)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 114 (366)
.|..-.-.+|.++...|++++|.++++.+.+
T Consensus 21 HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 21 HDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444455678899999999999998888765
No 372
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=67.79 E-value=21 Score=20.61 Aligned_cols=23 Identities=9% Similarity=-0.106 Sum_probs=12.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhhh
Q 017743 267 MLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
+.-++.+.|++++|.+..+.+.+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 33455556666666666665555
No 373
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=67.74 E-value=40 Score=24.58 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=30.4
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 017743 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205 (366)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 205 (366)
.+.+.+.|++++.. -..++..+...++.-.|.++++.+.+.++..+..|....+..+...|
T Consensus 9 ~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444455543332 23344555555555666666666666555555554444444444443
No 374
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.45 E-value=70 Score=26.39 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=18.5
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCCCHH
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLP 192 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 192 (366)
.+-..+.+++++|+..+.+++..|...+..
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek 39 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEK 39 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhh
Confidence 344556666777777777777666655443
No 375
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=67.42 E-value=32 Score=22.41 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHH
Q 017743 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315 (366)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 315 (366)
.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. .| +..|..++.++...|.-+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 3455555555533 33333333333334466666666666655 33 23455556666555554443
No 376
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=67.14 E-value=72 Score=26.41 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=14.7
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHH
Q 017743 241 NVSRAREIFDELSKLGKDMKVSTLN 265 (366)
Q Consensus 241 ~~~~a~~~~~~~~~~~~~~~~~~~~ 265 (366)
+...|...+......+.........
T Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 252 DKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHH
Confidence 6666777777666665554444433
No 377
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.13 E-value=56 Score=25.19 Aligned_cols=55 Identities=5% Similarity=-0.084 Sum_probs=23.7
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
......|.+++|+.+++...+.+. .......--+.+...|+.++|+.-|++..+.
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 334444555555555444433221 1122222233444555555555555555444
No 378
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.56 E-value=92 Score=27.42 Aligned_cols=201 Identities=11% Similarity=0.079 Sum_probs=102.4
Q ss_pred HHHHHHHHhcCCCCChhhH--HHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHhcCCHHHHH
Q 017743 31 MWLFSEMRNSGCRPDPSVY--NALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV--TYNILLRACAQARNVDQVN 106 (366)
Q Consensus 31 ~~~~~~~~~~g~~p~~~~~--~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~ 106 (366)
.++++.+.+.|..|+.... ...+...+..+. .+ +.+.+.+ .|..|+.. .....+...+..|+.+.+.
T Consensus 15 ~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~----~~----~v~~Ll~-~ga~~~~~~~~~~t~L~~A~~~g~~~~v~ 85 (413)
T PHA02875 15 LDIARRLLDIGINPNFEIYDGISPIKLAMKFRD----SE----AIKLLMK-HGAIPDVKYPDIESELHDAVEEGDVKAVE 85 (413)
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC----HH----HHHHHHh-CCCCccccCCCcccHHHHHHHCCCHHHHH
Confidence 7888999999998887763 345555553332 43 3333333 33344432 1234556667788887665
Q ss_pred HHHHHHHHcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHhccCChhHHHHHHHH
Q 017743 107 ALFKELHESILAPDI---YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF--NLLIDSYGKRQAFDKMEQVFKS 181 (366)
Q Consensus 107 ~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~ 181 (366)
.++ +.|...+. ..-.+.+...+..|+.+ +++.+.+.|..|+.... .+.+...+..|+.+.+..+
T Consensus 86 ~Ll----~~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L--- 154 (413)
T PHA02875 86 ELL----DLGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL--- 154 (413)
T ss_pred HHH----HcCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH---
Confidence 554 33322111 11123444455666654 55555666766543221 2334445567776654444
Q ss_pred HHhcCCCCC---HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHH---HHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 182 LMHSKEKPT---LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT---YECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 182 ~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
.+.|..++ ..-.+.+..+ +..|+.+ +.+.+.+.|..++... ...++...+..|+.+ +.+.+.+.
T Consensus 155 -l~~g~~~~~~d~~g~TpL~~A-~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~ 224 (413)
T PHA02875 155 -IDHKACLDIEDCCGCTPLIIA-MAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKR 224 (413)
T ss_pred -HhcCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHC
Confidence 34444332 2223333333 3455554 4455566665555321 123444344556654 45566677
Q ss_pred CCCCCH
Q 017743 256 GKDMKV 261 (366)
Q Consensus 256 ~~~~~~ 261 (366)
|..++.
T Consensus 225 gad~n~ 230 (413)
T PHA02875 225 GADCNI 230 (413)
T ss_pred CcCcch
Confidence 777664
No 379
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=66.40 E-value=56 Score=24.90 Aligned_cols=43 Identities=12% Similarity=0.075 Sum_probs=30.4
Q ss_pred HHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccccc
Q 017743 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347 (366)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 347 (366)
.+-.|.+.|.+++|.+++++.... |+......-|....+..+.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHcccc
Confidence 345799999999999999998873 4555555555555555443
No 380
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=65.62 E-value=25 Score=31.05 Aligned_cols=107 Identities=12% Similarity=0.004 Sum_probs=73.1
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhCCCCCCHHH-HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 017743 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFIT-YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276 (366)
Q Consensus 198 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 276 (366)
...+...++++.|..++.+.++. .|+... |..=..++.+.+++..|..=+..+.+..+. ....|-.=..++...++
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHH
Confidence 44556778899999999998887 465443 333347788889998888877777776532 23344444455666677
Q ss_pred hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhh
Q 017743 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309 (366)
Q Consensus 277 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 309 (366)
+.+|...|+.... +.|+..-....+.-|-+.
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHHHHH
Confidence 7888888877665 567877777777666443
No 381
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.58 E-value=74 Score=25.99 Aligned_cols=156 Identities=15% Similarity=0.167 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--CCCChhhHHHHHHHHHhcC
Q 017743 63 AKALAKALGYFQKMKGMERCKPN--IVTYNILLRACAQARNVDQVNALFKELHES---I--LAPDIYTYNGVMDAYGKNG 135 (366)
Q Consensus 63 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~ll~~~~~~~ 135 (366)
...+++|+.-|.+..+..|-+.+ ..+...++....+.+++++....|.+++.. . -..+..+.|.++...+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 33566777777766654433222 234455666777777777777766666531 1 1123344555555554444
Q ss_pred CHHHHHHHHHHHH----HCC-CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC----C-------CHHHHHHHHH
Q 017743 136 MIKEMESVLSRMK----SNQ-CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK----P-------TLPTFNSMII 199 (366)
Q Consensus 136 ~~~~a~~~~~~~~----~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~-------~~~~~~~li~ 199 (366)
+.+-..++++.-. +.. -..=-.|-+.+...|...+.+....++++++.++-.. . =...|..-|+
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 4443333333211 110 0000112234555666666666666666666543111 0 1234555566
Q ss_pred HHHhcCcHhHHHHHHHHHH
Q 017743 200 NYGKARLQGKAEYVFQKMT 218 (366)
Q Consensus 200 ~~~~~~~~~~a~~~~~~~~ 218 (366)
.|....+-.....++++..
T Consensus 200 mYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhhcccHHHHHHHHHHH
Confidence 6666666666666666554
No 382
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=63.19 E-value=32 Score=20.96 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 017743 294 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341 (366)
Q Consensus 294 p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 341 (366)
|....++.++..+++..-.++++.++.+..++|. .+..+|..-++.+
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 3444455555555555555555555555555554 2334444444433
No 383
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=63.03 E-value=89 Score=26.04 Aligned_cols=111 Identities=7% Similarity=0.024 Sum_probs=59.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 017743 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205 (366)
Q Consensus 126 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 205 (366)
.++....+.++..+..+.+..+. ....-...+..+...|++..|++++.+..+. .. +...|+.+=..- .
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L~---~ 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHLS---S 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHHh---H
Confidence 34555566666666666666664 3344455667777889999999888877553 10 111111111100 1
Q ss_pred cHhHHHHHHHHHHhC-----CCCCCHHHHHHHHHHhhccCcHHHHHH
Q 017743 206 LQGKAEYVFQKMTAM-----KYTPSFITYECIITMYGYCDNVSRARE 247 (366)
Q Consensus 206 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~ 247 (366)
+..+.......+.+. -...|+..|..+..+|.-.|+...+.+
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 112222222221111 124677788888888888887666543
No 384
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=62.75 E-value=9.5 Score=27.06 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHhcCCCCC
Q 017743 172 FDKMEQVFKSLMHSKEKPT 190 (366)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~ 190 (366)
-..|..+|..|++.|-+||
T Consensus 111 k~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 111 KTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred CCcHHHHHHHHHhCCCCCc
Confidence 3344444445544444443
No 385
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.03 E-value=87 Score=25.60 Aligned_cols=202 Identities=11% Similarity=0.124 Sum_probs=121.5
Q ss_pred CCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC
Q 017743 80 ERCKPNIVTYNILLRA-CAQARNVDQVNALFKELHESILAPD---IYTYNGVMDAYGKNGMIKEMESVLSRMKSN---QC 152 (366)
Q Consensus 80 ~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~ 152 (366)
.+..||+..=|..-.+ -.+...+++|+.-|++.++...... -.+...++....+.+++++..+.+.++... .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3446666543332211 1234579999999999887532222 334566788899999999999999988532 11
Q ss_pred --CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCC---
Q 017743 153 --KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS-----KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY--- 222 (366)
Q Consensus 153 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--- 222 (366)
.-+..+.+.+++..+...+.+...+.++.-++. +-..--.|-+.+...|...+.+....++++++....-
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 124556677777777777777666666544322 1111122345566777778888888888888765421
Q ss_pred -CCC-------HHHHHHHHHHhhccCcHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HhcCChhHHHH
Q 017743 223 -TPS-------FITYECIITMYGYCDNVSRAREIFDELSKL-GKDMKVSTLNAMLEAY-----CMNGLPTEADL 282 (366)
Q Consensus 223 -~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~-----~~~g~~~~a~~ 282 (366)
..| ..+|..=|+.|....+-.....+++..... .--|.+.... +|+-| .+.|++++|-.
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 111 245666777777777777777777765432 2234444433 33333 34677887743
No 386
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=61.69 E-value=99 Score=26.13 Aligned_cols=57 Identities=16% Similarity=0.051 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 265 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDS---STYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 265 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
..|..+..+.|+..+|.+.++.+.+. .|-. .....|+.+|....-+.++..++-+.-
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555555667777777777665543 1211 223456666666655555555544443
No 387
>PRK12798 chemotaxis protein; Reviewed
Probab=61.60 E-value=1.1e+02 Score=26.78 Aligned_cols=237 Identities=12% Similarity=0.078 Sum_probs=135.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hhc
Q 017743 92 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYG--KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS-YGK 168 (366)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 168 (366)
.+-....-|++.-...+ ...+..++. =..++.+.. -.|+..++.+.+..+.....++...-+-.|+.+ ...
T Consensus 87 a~iy~lSGGnP~vlr~L----~~~d~~~~~--d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~ 160 (421)
T PRK12798 87 ALIYLLSGGNPATLRKL----LARDKLGNF--DQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMV 160 (421)
T ss_pred HHhhHhcCCCHHHHHHH----HHcCCCChh--hHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhc
Confidence 33334445666444433 343333222 233333332 368999999999988877777777777777765 456
Q ss_pred cCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCcHhHHHHHHHHHHhC-CCCCCHH-HHHHHHHHhhccC--
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPT----LPTFNSMIINYGKARLQGKAEYVFQKMTAM-KYTPSFI-TYECIITMYGYCD-- 240 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~~~-- 240 (366)
..+...|+++|+...-. -|. ......-+....+.|+.+++..+-...... ...|-.. .+..+..++.+.+
T Consensus 161 ~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~ 238 (421)
T PRK12798 161 ATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDE 238 (421)
T ss_pred ccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccc
Confidence 67889999999987652 333 233444455667788888877766555432 2233322 2233333333333
Q ss_pred -cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHH--HhhchHHHHH
Q 017743 241 -NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD-SSTYKLLYKAY--TKANMKELVQ 316 (366)
Q Consensus 241 -~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~--~~~~~~~~a~ 316 (366)
..+....++..|.. .--...|..+...-.-.|+.+-|...-++.....-..+ ...-..|..+. .-..+++.+.
T Consensus 239 ~~~~~l~~~ls~~d~---~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al 315 (421)
T PRK12798 239 IRDARLVEILSFMDP---ERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESAL 315 (421)
T ss_pred ccHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHH
Confidence 23333333333322 22356888888888889999888777777665421111 11111222222 2345688888
Q ss_pred HHHHHHHhCCCCCChhHHHHHHH
Q 017743 317 KLLKRMEQNGIVPNKRFFLEALE 339 (366)
Q Consensus 317 ~~~~~m~~~g~~~~~~~~~~ll~ 339 (366)
+.+..+-...+.|...-+.....
T Consensus 316 ~~L~~I~~~~L~~~Dr~Ll~AA~ 338 (421)
T PRK12798 316 EELSQIDRDKLSERDRALLEAAR 338 (421)
T ss_pred HHHhcCChhhCChhhHHHHHHHH
Confidence 88888877777776655544433
No 388
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=61.59 E-value=1.2e+02 Score=27.25 Aligned_cols=238 Identities=11% Similarity=0.122 Sum_probs=120.0
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHcC-CC-CChhhHHHHHHHHHhcCCHH-HHH
Q 017743 71 GYFQKMKGMERCKPNIVTYNILLRACAQAR------NVDQVNALFKELHESI-LA-PDIYTYNGVMDAYGKNGMIK-EME 141 (366)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~-~~-~~~~~~~~ll~~~~~~~~~~-~a~ 141 (366)
.+|+..... -|+...|+..|..|...- .+.....+++.....+ .. -....|..+.-.++...... -|.
T Consensus 303 ~v~ee~v~~---l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~ 379 (568)
T KOG2396|consen 303 AVYEEAVKT---LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAV 379 (568)
T ss_pred HHHHHHHHH---hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHH
Confidence 445444431 456666666665554432 3444555555554432 22 22334555554444443322 233
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcc-CChhHH-HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc-HhH--HHHHHHH
Q 017743 142 SVLSRMKSNQCKPDIITFNLLIDSYGKR-QAFDKM-EQVFKSLMHSKEKPTLPTFNSMIINYGKARL-QGK--AEYVFQK 216 (366)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a-~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~--a~~~~~~ 216 (366)
.+..+ ++..+...|..-+...... .|+.-. .+.|......-..+-...|+... .++ .+. -..++..
T Consensus 380 ~l~~e----~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a 450 (568)
T KOG2396|consen 380 KLTTE----LFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISA 450 (568)
T ss_pred HhhHH----HhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHH
Confidence 33222 2344555555544444422 122221 22233333322223333444333 122 111 1122222
Q ss_pred HHhCCCCCCHHH-HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHhhhC-CC
Q 017743 217 MTAMKYTPSFIT-YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM--NGLPTEADLLFENSHNM-GV 292 (366)
Q Consensus 217 ~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~-~~ 292 (366)
....+ .|+..+ -+.++..+...|-..+|..++..+... ++|+...|..+|+.-.. .-+...+.++++.|... |
T Consensus 451 ~~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg- 527 (568)
T KOG2396|consen 451 LLSVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG- 527 (568)
T ss_pred HHHhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC-
Confidence 33332 344333 356667777778888888888888776 45677777777764322 22366677777777643 5
Q ss_pred CCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 293 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 293 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.|+..|...+.-=...|..+.+-.++.+..+
T Consensus 528 -~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 528 -ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred -CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 4777777777666677877777776666554
No 389
>PRK09857 putative transposase; Provisional
Probab=60.61 E-value=99 Score=25.80 Aligned_cols=66 Identities=6% Similarity=0.088 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCC
Q 017743 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330 (366)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~ 330 (366)
+..++......++.++..++++.+.+. .++......+++.-+...|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 444555545566666666666666554 233444555677777777777788888888988887665
No 390
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=60.21 E-value=45 Score=21.72 Aligned_cols=16 Identities=6% Similarity=0.173 Sum_probs=7.5
Q ss_pred ccCChhHHHHHHHHHH
Q 017743 168 KRQAFDKMEQVFKSLM 183 (366)
Q Consensus 168 ~~~~~~~a~~~~~~~~ 183 (366)
..|+.+.|.++++.+.
T Consensus 48 ~~g~~~~ar~LL~~L~ 63 (88)
T cd08819 48 NHGNESGARELLKRIV 63 (88)
T ss_pred ccCcHHHHHHHHHHhc
Confidence 3344445555544443
No 391
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=60.03 E-value=53 Score=22.43 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=11.9
Q ss_pred HHHHHhhccCcHHHHHHHHHHH
Q 017743 231 CIITMYGYCDNVSRAREIFDEL 252 (366)
Q Consensus 231 ~l~~~~~~~~~~~~a~~~~~~~ 252 (366)
.++.-|...++.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555556666666666554
No 392
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=59.63 E-value=47 Score=22.79 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=27.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 017743 17 LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA 55 (366)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 55 (366)
+++.+.++...++|+++.+.|.++| ..+...-+.|-..
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~ 104 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSI 104 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 5666778888888999998888887 4455555554443
No 393
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.26 E-value=8.2 Score=32.28 Aligned_cols=90 Identities=13% Similarity=-0.006 Sum_probs=45.0
Q ss_pred hcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 017743 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282 (366)
Q Consensus 203 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 282 (366)
..|.++.|++.+...+..+ ++....|..-.+++.+.+++..|++=++...+.+.. +...|-.=-.+..-.|++++|.+
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHH
Confidence 3455566666665555543 344445555555555666666665555555544322 12222222222333556666666
Q ss_pred HHHHhhhCCCCC
Q 017743 283 LFENSHNMGVTP 294 (366)
Q Consensus 283 ~~~~~~~~~~~p 294 (366)
.+....+.++.+
T Consensus 204 dl~~a~kld~dE 215 (377)
T KOG1308|consen 204 DLALACKLDYDE 215 (377)
T ss_pred HHHHHHhccccH
Confidence 666665555443
No 394
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=58.85 E-value=1.1e+02 Score=25.66 Aligned_cols=71 Identities=10% Similarity=0.173 Sum_probs=42.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----------cCcHhHH
Q 017743 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK----------ARLQGKA 210 (366)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~~~~~~a 210 (366)
.++++.+...++.|.-..+.-+.-.+.+.=.+..++.+|+.+.. |..-|..++..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 35666666667777766666666666666666777777777644 22224444444432 3666666
Q ss_pred HHHHHH
Q 017743 211 EYVFQK 216 (366)
Q Consensus 211 ~~~~~~ 216 (366)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 655543
No 395
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=58.78 E-value=1.3e+02 Score=26.61 Aligned_cols=171 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchH---------------------------------
Q 017743 15 SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD--------------------------------- 61 (366)
Q Consensus 15 ~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~--------------------------------- 61 (366)
..+.--+...|.|+.|.+++++ +.|+.--...-..++..|.....
T Consensus 122 S~laadhvAAGsFetAm~LLnr--QiGivnF~PLk~~Fl~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i~~ 199 (422)
T PF06957_consen 122 SSLAADHVAAGSFETAMQLLNR--QIGIVNFEPLKPLFLEVYQASRTYLPALPSLPPLPSYIRRNWDESNPKNGLPAIPL 199 (422)
T ss_dssp --SHHHHHHCT-HHHHHHHHHH--HC-B---GGGHHHHHHHHCCTEEEE-SSTTTS-EEEEEBCTTTTSSSCCG-BB---
T ss_pred CCcHHHHHHhCCHHHHHHHHHH--HhCccccHHHHHHHHHHHHhhceecccCCCCCCccccccCCccccccccCCCcCcC
Q ss_pred ----------------HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 017743 62 ----------------KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125 (366)
Q Consensus 62 ----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 125 (366)
..|++.+|+..|+.+. +...+...-...+.+++.+++....+. +.-
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL-----------~~i~l~vv~~~~E~~e~~eli~icrEY-------ilg 261 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSIL-----------HSIPLLVVESREEEDEAKELIEICREY-------ILG 261 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-----------HHHHC--BSSCHHHHHHHHHHHHHHHH-------HHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----------HHhheeeecCHHHHHHHHHHHHHHHHH-------HHH
Q ss_pred HHHHHHHhc------CCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 017743 126 GVMDAYGKN------GMIKEMESVLSRMKSNQCKPD--IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 197 (366)
Q Consensus 126 ~ll~~~~~~------~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 197 (366)
..|..-.+. .+.+...++-.-+....++|. .-++..-|..+.|.+++..|-.+-+++++.+..++...-..-
T Consensus 262 l~iEl~Rr~l~~~~~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArK 341 (422)
T PF06957_consen 262 LSIELERRELPKDPVEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARK 341 (422)
T ss_dssp HHHHHHHCTS-TTTHHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHH
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHH
Q ss_pred HHHHHhcC
Q 017743 198 IINYGKAR 205 (366)
Q Consensus 198 i~~~~~~~ 205 (366)
+..-+...
T Consensus 342 il~~~e~~ 349 (422)
T PF06957_consen 342 ILQACERN 349 (422)
T ss_dssp HHHHHCCS
T ss_pred HHHHHhcC
No 396
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=58.73 E-value=1.6e+02 Score=27.70 Aligned_cols=183 Identities=11% Similarity=0.086 Sum_probs=98.4
Q ss_pred HHHHHHHHH-hcCCCCCh--hhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCH-----HHHHHHHHHHHhcCC
Q 017743 30 AMWLFSEMR-NSGCRPDP--SVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI-----VTYNILLRACAQARN 101 (366)
Q Consensus 30 A~~~~~~~~-~~g~~p~~--~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~ 101 (366)
|+..++-+. +..+.|.. .++-.+...+. ....+++.|...+.+...... .++. .+...++..+.+.+.
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~---~eT~n~~~Ae~~L~k~~~l~~-~~~~~d~k~~~~~ll~~i~~~~~~ 115 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILL---EETENLDLAETYLEKAILLCE-RHRLTDLKFRCQFLLARIYFKTNP 115 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHhcCH
Confidence 455555555 33333322 33333444443 244558888888887643211 1221 223355666766666
Q ss_pred HHHHHHHHHHHHHcCCC----CChhhHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHH--hccCC
Q 017743 102 VDQVNALFKELHESILA----PDIYTYNGV-MDAYGKNGMIKEMESVLSRMKSNQ---CKPDIITFNLLIDSY--GKRQA 171 (366)
Q Consensus 102 ~~~a~~~~~~~~~~~~~----~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~~~ 171 (366)
.. |.+.+++.++.--. +-...|..+ +..+...++...|.+.++.+...- ..|...++-.++.+. ...+.
T Consensus 116 ~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 116 KA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred HH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 55 88888887654211 222333333 233333478999999988875532 234444554555443 34565
Q ss_pred hhHHHHHHHHHHhcCC---------CCCHHHHHHHHHHHH--hcCcHhHHHHHHHHH
Q 017743 172 FDKMEQVFKSLMHSKE---------KPTLPTFNSMIINYG--KARLQGKAEYVFQKM 217 (366)
Q Consensus 172 ~~~a~~~~~~~~~~~~---------~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~ 217 (366)
.+.+.+..+.+..... .|...+|..+++.++ ..|+++.+...++.+
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6777777776633211 234566766666554 557766666665554
No 397
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=58.40 E-value=40 Score=29.80 Aligned_cols=106 Identities=14% Similarity=0.069 Sum_probs=74.0
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhcc
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPT-LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYC 239 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 239 (366)
-+..+.+.++++.|..++.+.++ ..|+ +..|..-..++.+.+++..|..=....++.. |+ ...|-.=..++.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhH
Confidence 34556778899999999999988 4554 4444444578889999999988888877764 43 23344444555666
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 017743 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 273 (366)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 273 (366)
+.+.+|...|+..... .|+..-....+.-|-.
T Consensus 86 ~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKL--APNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHhhhc--CcCcHHHHHHHHHHHH
Confidence 7788888888777764 5666666666665544
No 398
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=58.25 E-value=13 Score=26.37 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=24.7
Q ss_pred hcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 017743 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236 (366)
Q Consensus 203 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (366)
..|.-..|..+|+.|++.|-+|| .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 44667789999999999998887 477776543
No 399
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=57.88 E-value=35 Score=19.73 Aligned_cols=38 Identities=18% Similarity=0.058 Sum_probs=27.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 017743 16 KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITA 55 (366)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 55 (366)
.+.-++.+.|++++|.+..+.+++. +|+..-...|-..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHHHH
Confidence 3566788999999999999999886 7877766555443
No 400
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.21 E-value=1.8e+02 Score=27.84 Aligned_cols=74 Identities=16% Similarity=0.075 Sum_probs=40.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCC---ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 017743 18 IAVMGKKGQTRLAMWLFSEMRNSGCRP---DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLR 94 (366)
Q Consensus 18 i~~~~~~~~~~~A~~~~~~~~~~g~~p---~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 94 (366)
++.+.+.+.+++|+++-+..... .| -...+...|..+. ..+++++|-.....|.. .+..-|...+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl----~~~~y~~Aas~~p~m~g-----n~~~eWe~~V~ 431 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLL----FEGKYDEAASLCPKMLG-----NNAAEWELWVF 431 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHH----hcchHHHHHhhhHHHhc-----chHHHHHHHHH
Confidence 56677788888888876654432 33 2334555565555 33446666655555552 24444444444
Q ss_pred HHHhcCCH
Q 017743 95 ACAQARNV 102 (366)
Q Consensus 95 ~~~~~~~~ 102 (366)
.+...++.
T Consensus 432 ~f~e~~~l 439 (846)
T KOG2066|consen 432 KFAELDQL 439 (846)
T ss_pred Hhcccccc
Confidence 44444443
No 401
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=57.07 E-value=1.1e+02 Score=28.66 Aligned_cols=91 Identities=16% Similarity=0.151 Sum_probs=48.1
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCCChhh
Q 017743 51 ALITAHLHTRDKAKALAKALGYFQKMKGM-ERCKPNIVTYNILLRACAQARNVD------QVNALFKELHESILAPDIYT 123 (366)
Q Consensus 51 ~ll~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~ 123 (366)
+++.+|...++ +-++.++++..... .|-+.=...||..|+...+.|.++ .|.+.++... +..|.-|
T Consensus 33 sl~eacv~n~~----~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t 105 (1117)
T COG5108 33 SLFEACVYNGD----FLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLT 105 (1117)
T ss_pred HHHHHHHhcch----HHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchH
Confidence 77777774444 77777777666532 111223456677777777777643 2333333332 3446667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 017743 124 YNGVMDAYGKNGMIKEMESVLSRMK 148 (366)
Q Consensus 124 ~~~ll~~~~~~~~~~~a~~~~~~~~ 148 (366)
|..++.+....-+..-..-++.++.
T Consensus 106 ~all~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 106 YALLCQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHHHHHhhcChHhHHhccHHHHHHH
Confidence 7666665554333333333444433
No 402
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=57.03 E-value=1e+02 Score=24.80 Aligned_cols=119 Identities=13% Similarity=0.001 Sum_probs=69.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCcHh
Q 017743 131 YGKNGMIKEMESVLSRMKSNQCKPDI-ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT-FNSMIINYGKARLQG 208 (366)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~ 208 (366)
|.....++.|+.-|.+.... .|+. .-|+.-+-++.+..+++.+..=-.+.++ +.|+..- ...+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 44455677777766665543 5555 3445566667777777777665555555 4455433 333444555667777
Q ss_pred HHHHHHHHHH----hCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 017743 209 KAEYVFQKMT----AMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253 (366)
Q Consensus 209 ~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 253 (366)
.|+..+.+.. +..+++.......|..+--..-...+..++.+...
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 8877777663 22344445566666665544455555655555543
No 403
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=56.73 E-value=85 Score=25.37 Aligned_cols=58 Identities=17% Similarity=0.012 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhh----CC-CCCCHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 017743 265 NAMLEAYCMNGLPTEADLLFENSHN----MG-VTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322 (366)
Q Consensus 265 ~~li~~~~~~g~~~~a~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 322 (366)
-.+..-|...|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+--++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455666667777777777766531 12 1223344555556666666666665554433
No 404
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.50 E-value=46 Score=21.19 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=21.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHH
Q 017743 17 LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNA 51 (366)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ 51 (366)
+++.+.++.--++|+++++.|.++| ..+...-+.
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~ 70 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKA 70 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4555667777777777777777776 334443333
No 405
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=56.48 E-value=1.7e+02 Score=27.05 Aligned_cols=132 Identities=9% Similarity=0.036 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI 91 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 91 (366)
..|..+|.---...+.+.+..+++.++.. .|-..-|-. .++....+.|..+.+.++|++-. .+++.+...|..
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~---kfA~~E~klg~~~~s~~Vfergv--~aip~SvdlW~~ 118 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWK---KFADYEYKLGNAENSVKVFERGV--QAIPLSVDLWLS 118 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHH---HHHHHHHHhhhHHHHHHHHHHHH--HhhhhHHHHHHH
Confidence 34555555544555566777777777753 454443322 23333346677889999999887 467777777777
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHc-CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 017743 92 LLRACA-QARNVDQVNALFKELHES-ILA-PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150 (366)
Q Consensus 92 l~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 150 (366)
.+..+. ..|+.+.....|+..... |.. ....-|...|..-...+++.....+++...+.
T Consensus 119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 665554 467788888888887764 211 23345666677667788888888888888764
No 406
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=56.02 E-value=85 Score=23.60 Aligned_cols=65 Identities=11% Similarity=0.087 Sum_probs=42.4
Q ss_pred HHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 017743 215 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280 (366)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 280 (366)
+.+...|+.++..-. .++..+...++.-.|.++++.+.+.+..++..|.-.-+..+...|-..+.
T Consensus 15 ~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 15 KLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 334556766665433 34444444455668888888888887777777766677778887766543
No 407
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=55.56 E-value=2e+02 Score=28.87 Aligned_cols=198 Identities=11% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHhccCChhHHHHHHHHH-HhcCC--CCCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHhCCCCCCHHHHHH-----
Q 017743 161 LLIDSYGKRQAFDKMEQVFKSL-MHSKE--KPTLPTFNSMIINYGKA-RLQGKAEYVFQKMTAMKYTPSFITYEC----- 231 (366)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~-~~~~~--~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~----- 231 (366)
..+..+...+++.+|..+.++- ++.++ .-++..|-.=+..+.+. ++.+-.-.++..+.+.++.-+...-..
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~tmY~~~~~~~~~ 778 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKTMYKDTYPPSSE 778 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccccccccccccccc
Q ss_pred -----HHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 017743 232 -----IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG--LPTEADLLFENSHNMGVTPDSSTYKLLYK 304 (366)
Q Consensus 232 -----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 304 (366)
-.......++.....+.+....+.... .......++.+|++.+ ++++|+.+..++.+.+..--......++-
T Consensus 779 ~~~~~~~~~~~~~~KVn~ICdair~~l~~~~~-~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~f 857 (928)
T PF04762_consen 779 AQPNSNSSTASSESKVNKICDAIRKALEKPKD-KDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLCF 857 (928)
T ss_pred cccccccCCCccccHHHHHHHHHHHHhccccc-chhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHhee
Q ss_pred HHHhhchHHHHHHHHH----HHHhCCCCCChhHHHHHHHHhhcccccCCCCCccchhhh
Q 017743 305 AYTKANMKELVQKLLK----RMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTR 359 (366)
Q Consensus 305 ~~~~~~~~~~a~~~~~----~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~r 359 (366)
..--..-++.|+.+|+ .|+...-.-|++-|.-+|+.+.........-.....+.|
T Consensus 858 LvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkR 916 (928)
T PF04762_consen 858 LVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKR 916 (928)
T ss_pred eccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCC
No 408
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=54.84 E-value=2.2e+02 Score=27.89 Aligned_cols=292 Identities=14% Similarity=0.089 Sum_probs=151.7
Q ss_pred hHHHHHHHHHHhcCCC-------CChhhHHHHHHHHhhchHHH------HH-HHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 017743 28 RLAMWLFSEMRNSGCR-------PDPSVYNALITAHLHTRDKA------KA-LAKALGYFQKMKGMERCKPNIVTYNILL 93 (366)
Q Consensus 28 ~~A~~~~~~~~~~g~~-------p~~~~~~~ll~~~~~~~~~~------~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 93 (366)
+....+++++...|+. +.-+.|+.++.-+.+..... +. .-.|-..|.. .| -|+ -.|
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~----~g-~~~-----eAI 367 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAE----HG-LPS-----EAI 367 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHh----CC-ChH-----HHH
Confidence 3356677777777643 24456777776665433211 11 1122222222 11 122 234
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc---C-----------CCCChhhH----HHHHHH--HHhcCCHHHHHHHHHHHHHCCCC
Q 017743 94 RACAQARNVDQVNALFKELHES---I-----------LAPDIYTY----NGVMDA--YGKNGMIKEMESVLSRMKSNQCK 153 (366)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~---~-----------~~~~~~~~----~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~ 153 (366)
......|+++.|..++++.-.. + .-|+.... -.++.+ .....++.+|..++.++...-..
T Consensus 368 ~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~ 447 (894)
T COG2909 368 DHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKA 447 (894)
T ss_pred HHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCc
Confidence 5555678888887777765111 0 01221111 122222 34567899999999888655323
Q ss_pred CCHH-------HHHHHH-HHHhccCChhHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 154 PDII-------TFNLLI-DSYGKRQAFDKMEQVFKSLMHS----KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 154 ~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
|+.. .++.+- ......|+++.|.++-+..... -..+....+..+..+..-.|++++|..+.....+..
T Consensus 448 ~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 448 PMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred CcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 2221 233222 2234578899999888877654 123345667777788888899999999888776542
Q ss_pred CCCCH---HHHHHHH--HHhhccCcHH--HHHHHHHHHHhC-----CC-CCCHHHHHHHHHHHHhc-CChhHHHHHHHHh
Q 017743 222 YTPSF---ITYECII--TMYGYCDNVS--RAREIFDELSKL-----GK-DMKVSTLNAMLEAYCMN-GLPTEADLLFENS 287 (366)
Q Consensus 222 ~~~~~---~~~~~l~--~~~~~~~~~~--~a~~~~~~~~~~-----~~-~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~ 287 (366)
..-+. ..|..+. ..+...|+.. +....|...... .. .+-..++..+..++.+. +...++..-+.-.
T Consensus 528 ~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~ 607 (894)
T COG2909 528 RQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVG 607 (894)
T ss_pred HHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhh
Confidence 22232 2333332 2344556332 223333332221 11 11234455555555541 1222222222222
Q ss_pred hhCCCCCCHHHH--HHHHHHHHhhchHHHHHHHHHHHHhCCCCC
Q 017743 288 HNMGVTPDSSTY--KLLYKAYTKANMKELVQKLLKRMEQNGIVP 329 (366)
Q Consensus 288 ~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~ 329 (366)
......|-...+ ..|++.....|+.++|...++++......+
T Consensus 608 ~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 608 SVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred hhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 222222222222 367788889999999999999988654333
No 409
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=53.75 E-value=1.5e+02 Score=25.86 Aligned_cols=53 Identities=9% Similarity=0.130 Sum_probs=27.0
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHH--HHHHHHHHHH--hcCcHhHHHHHHHHHHh
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLP--TFNSMIINYG--KARLQGKAEYVFQKMTA 219 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~~~~~~a~~~~~~~~~ 219 (366)
+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34566666666666666654 333332 2333333332 23455566666665554
No 410
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.74 E-value=1.5e+02 Score=25.89 Aligned_cols=92 Identities=11% Similarity=0.014 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCCC
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESI--LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN---------QCKPD 155 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 155 (366)
..+.-+...|...|+++.|++.|.+..+-- .+.....|-.+|..-.-.|+|.....+..+.... .+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 356777888888999999999888855421 1223445566666667778887777776666543 12333
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHH
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFK 180 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~ 180 (366)
...+..+...+.+ ++..|.+.|-
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL 253 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFL 253 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHH
Confidence 4444444443333 5555555543
No 411
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=53.68 E-value=1.5e+02 Score=25.85 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=40.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHh--cCCHHHHHHHHHHHHHC
Q 017743 93 LRACAQARNVDQVNALFKELHESILAPDIY--TYNGVMDAYGK--NGMIKEMESVLSRMKSN 150 (366)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~--~~~~~~a~~~~~~~~~~ 150 (366)
+..+.+.+++..|.++++.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455889999999999999886 555554 34445555543 55778899999887654
No 412
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=53.63 E-value=62 Score=21.30 Aligned_cols=57 Identities=14% Similarity=0.067 Sum_probs=29.6
Q ss_pred hchHHHHHHHHHHHHHHHHhcCCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 017743 58 HTRDKAKALAKALGYFQKMKGMERCKP----NIVTYNILLRACAQARNVDQVNALFKELHES 115 (366)
Q Consensus 58 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (366)
+.++-.+..+...+.|+...... ... -....-.+.......|++++|.+.+++.++.
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~-~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSN-NSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcc-cchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33444444455555665554321 111 0122233455566778888888877776653
No 413
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.39 E-value=1e+02 Score=24.93 Aligned_cols=59 Identities=12% Similarity=-0.024 Sum_probs=34.7
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 229 YECIITMYGYCDNVSRAREIFDELSKL----G-KDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 229 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
.-.+..-|...|++++|.++|+.+... | ..+...+...+..++...|+.+....+.-++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345556666777777777777766421 1 1233445555666666677776666555444
No 414
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=53.38 E-value=1.4e+02 Score=25.35 Aligned_cols=68 Identities=10% Similarity=-0.036 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC
Q 017743 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP---TLPTFNSMIINYGKARLQGKAEYVFQKMTAM 220 (366)
Q Consensus 153 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 220 (366)
.....+|..+...+.+.|.++.|...+..+...+... .+.....-+..+-..|+..+|...++.....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456778889999999999999999999987754221 3344455566777889999999999888873
No 415
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=53.08 E-value=1.8e+02 Score=26.37 Aligned_cols=230 Identities=7% Similarity=0.044 Sum_probs=126.3
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhc------CCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccCCh-hHH
Q 017743 105 VNALFKELHESILAPDIYTYNGVMDAYGKN------GMIKEMESVLSRMKSNQ-CKP-DIITFNLLIDSYGKRQAF-DKM 175 (366)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~-~~a 175 (366)
..++|++..+. -|+...|+..|..|... ..+.....+++...+.+ ..+ ....|..+.-.++..... ..|
T Consensus 301 ~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a 378 (568)
T KOG2396|consen 301 CCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVA 378 (568)
T ss_pred HHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHH
Confidence 33777776654 45666676666665432 24455566666654432 222 344555555555554443 333
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CcHhH-HHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc-HHHH--HHHHH
Q 017743 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKA-RLQGK-AEYVFQKMTAMKYTPSFITYECIITMYGYCDN-VSRA--REIFD 250 (366)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a--~~~~~ 250 (366)
..+-.+. ...+...|..-++..... .+++- -..++..+...-..+....|+... .++ ++.. ..++.
T Consensus 379 ~~l~~e~----f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~ 449 (568)
T KOG2396|consen 379 VKLTTEL----FRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIIS 449 (568)
T ss_pred HHhhHHH----hcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHH
Confidence 3333333 455666666655555422 23322 222233333332233344454444 222 2221 12233
Q ss_pred HHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh--hchHHHHHHHHHHHHh-CC
Q 017743 251 ELSKLGKDMKVS-TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK--ANMKELVQKLLKRMEQ-NG 326 (366)
Q Consensus 251 ~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~-~g 326 (366)
.+...+ .|+.. .-+.++.-+.+.|-..+|...+..+... ++|+...|..++..=.. .-+...++++|+.|.. .|
T Consensus 450 a~~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg 527 (568)
T KOG2396|consen 450 ALLSVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG 527 (568)
T ss_pred HHHHhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC
Confidence 333332 23333 3467888888999999999999998876 46788888888774322 2237788999999874 47
Q ss_pred CCCChhHHHHHHHHhhcccccCC
Q 017743 327 IVPNKRFFLEALETFSSSLAGSQ 349 (366)
Q Consensus 327 ~~~~~~~~~~ll~~~~~~~~~~~ 349 (366)
.|...|...+.-=...|.+..
T Consensus 528 --~d~~lw~~y~~~e~~~g~~en 548 (568)
T KOG2396|consen 528 --ADSDLWMDYMKEELPLGRPEN 548 (568)
T ss_pred --CChHHHHHHHHhhccCCCccc
Confidence 566666666655555555433
No 416
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=51.67 E-value=51 Score=22.66 Aligned_cols=35 Identities=31% Similarity=0.426 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 017743 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 276 (366)
.-.|.++++.+.+.+..++..|.-..+..+...|-
T Consensus 16 ~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 16 HLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred CCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33444444444444433344443333444444443
No 417
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=51.25 E-value=2.2e+02 Score=26.92 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT 59 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~ 59 (366)
.+| .+|-.|.|.|++++|.++....... .......+...+..+...
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 345 3778899999999999999554432 344556677777777654
No 418
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=51.21 E-value=1e+02 Score=23.15 Aligned_cols=42 Identities=7% Similarity=-0.039 Sum_probs=20.4
Q ss_pred HHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 017743 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205 (366)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 205 (366)
..+...++.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 33 ~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 33 RLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 333333444455555555555554445444444444444444
No 419
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=51.13 E-value=2e+02 Score=26.51 Aligned_cols=97 Identities=8% Similarity=0.068 Sum_probs=65.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCC-CCHHHHHHHH
Q 017743 15 SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK-PNIVTYNILL 93 (366)
Q Consensus 15 ~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~ 93 (366)
......=.+.|..+.+.++|++-+. |+..+...|...+..+.. ..++.+...+.|+......|.. .+...|-..|
T Consensus 83 ~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n---~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyi 158 (577)
T KOG1258|consen 83 KKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKN---NNGDPETLRDLFERAKSYVGLDFLSDPLWDKYI 158 (577)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhcccchhccHHHHHHH
Confidence 3334444577899999999999875 344555666666555443 3344556677777776544443 3445677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 017743 94 RACAQARNVDQVNALFKELHES 115 (366)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~ 115 (366)
..-...+++.....+++++++.
T Consensus 159 e~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 159 EFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccccHHHHHHHHHHHHhh
Confidence 8778888899999999888764
No 420
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=49.34 E-value=98 Score=22.33 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=11.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 017743 92 LLRACAQARNVDQVNALFKELHE 114 (366)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~ 114 (366)
|.-++.+.++++.+.++.+.+.+
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHh
Confidence 33344455555555555555444
No 421
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=49.19 E-value=2.5e+02 Score=26.96 Aligned_cols=158 Identities=9% Similarity=0.057 Sum_probs=67.8
Q ss_pred HHHHhcCChhHHHHHHHHHH-hcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHH
Q 017743 19 AVMGKKGQTRLAMWLFSEMR-NSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI-VTYNILLRAC 96 (366)
Q Consensus 19 ~~~~~~~~~~~A~~~~~~~~-~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 96 (366)
..|.-.|++++|++.--... .-.+.++...+..++.-|.. .-.+.+.+.+..-....++.+.. ...+.++..|
T Consensus 67 KVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id-----~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kc 141 (929)
T KOG2062|consen 67 KVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCID-----MYIETASETYKNPEQKSPIDQRLRDIVERMIQKC 141 (929)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHH-----HHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHh
Confidence 45555666666665432221 11244555555555554431 11344444444222112233322 2345566666
Q ss_pred HhcCCHHHHHHHHHHHHHcC------CCC--ChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHC---CCCCCHHHHHHHHH
Q 017743 97 AQARNVDQVNALFKELHESI------LAP--DIYTYNGVMDAYGKNGM-IKEMESVLSRMKSN---QCKPDIITFNLLID 164 (366)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~------~~~--~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~---~~~~~~~~~~~l~~ 164 (366)
...+++..|+.+.-+..+.+ ++. +....+.++..+....+ .+--.++++.+.+. ...|| |..+.+
T Consensus 142 l~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PD---y~~vc~ 218 (929)
T KOG2062|consen 142 LDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPD---YFSVCQ 218 (929)
T ss_pred hhhhHHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCC---eeeeee
Confidence 66555555544332221111 111 11122223333222221 22222333333222 22233 344556
Q ss_pred HHhccCChhHHHHHHHHHHh
Q 017743 165 SYGKRQAFDKMEQVFKSLMH 184 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~ 184 (366)
+|.-..+.+.+.++++++.+
T Consensus 219 c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 219 CYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred eeEEcCCHHHHHHHHHHHHh
Confidence 66667777777777777765
No 422
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=49.06 E-value=48 Score=23.05 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=20.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhh
Q 017743 266 AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309 (366)
Q Consensus 266 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 309 (366)
.++..+...+.+-.|.++++.+.+.+...+..|...-++.+.+.
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 55 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEA 55 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHC
Confidence 34444444444555555555555555444444444344444333
No 423
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=48.90 E-value=31 Score=16.50 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhC
Q 017743 242 VSRAREIFDELSKL 255 (366)
Q Consensus 242 ~~~a~~~~~~~~~~ 255 (366)
.+.+..+|+.+...
T Consensus 3 ~~~~r~i~e~~l~~ 16 (33)
T smart00386 3 IERARKIYERALEK 16 (33)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 424
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=48.89 E-value=84 Score=21.41 Aligned_cols=62 Identities=10% Similarity=-0.007 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC--cHHHHHHHHHHHHhCCCC
Q 017743 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKD 258 (366)
Q Consensus 195 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~ 258 (366)
..++..|...++.++|...+.++... .-.......++..+...+ .-+....++..+.+.+.-
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 45666777788888888888775321 112233444444444332 233445566666665543
No 425
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.51 E-value=49 Score=22.66 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 264 LNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666667777777776666655
No 426
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.78 E-value=1.3e+02 Score=23.32 Aligned_cols=144 Identities=10% Similarity=0.018 Sum_probs=91.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHH--HHHHHHhcCcHhHHHHHHHHHH
Q 017743 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS--MIINYGKARLQGKAEYVFQKMT 218 (366)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~~~~~~~~a~~~~~~~~ 218 (366)
.++|+.-.......-...|..++..... +.. +.......+...........+.. +...+...+++++|+.-++...
T Consensus 39 W~ywq~~q~~q~~~AS~~Y~~~i~~~~a-k~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l 116 (207)
T COG2976 39 WRYWQSHQVEQAQEASAQYQNAIKAVQA-KKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL 116 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3444433332223345567777766542 333 55555566655432222222222 3455778899999999999887
Q ss_pred hCCCCCCHHHHH-----HHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 017743 219 AMKYTPSFITYE-----CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291 (366)
Q Consensus 219 ~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (366)
.. |....+. .|.+.....|.+|+|...++.....+.. ......-...+...|+-++|..-|......+
T Consensus 117 ~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 117 AQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred cc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 54 2223333 3455667789999999999988776543 3344555678899999999999999998875
No 427
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=47.70 E-value=42 Score=21.47 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=7.2
Q ss_pred HHHHHHhCCCCCCh
Q 017743 318 LLKRMEQNGIVPNK 331 (366)
Q Consensus 318 ~~~~m~~~g~~~~~ 331 (366)
+++.+.+.|..++.
T Consensus 74 ~~~~Ll~~g~~~~~ 87 (89)
T PF12796_consen 74 IVKLLLEHGADVNI 87 (89)
T ss_dssp HHHHHHHTTT-TTS
T ss_pred HHHHHHHcCCCCCC
Confidence 44555566666553
No 428
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=47.32 E-value=1.4e+02 Score=23.67 Aligned_cols=98 Identities=12% Similarity=0.065 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---ChhhH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAP---DIYTY--NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 157 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 157 (366)
.+...-+|.|+--|.-...+.+|...|.. ..|+.| |..++ ..-|......|++++|++...++...-+.-|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 45555566666555555555556666643 344444 22222 244566678888888888888775443443432
Q ss_pred HHHHHHH----HHhccCChhHHHHHHHHH
Q 017743 158 TFNLLID----SYGKRQAFDKMEQVFKSL 182 (366)
Q Consensus 158 ~~~~l~~----~~~~~~~~~~a~~~~~~~ 182 (366)
.+-.+.. -..+.|..++|++..+.-
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3222221 134555566666655543
No 429
>PRK09462 fur ferric uptake regulator; Provisional
Probab=47.03 E-value=1.1e+02 Score=22.28 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=29.2
Q ss_pred HHHCCCCCCHHHHHHHHHHHhcc-CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc
Q 017743 147 MKSNQCKPDIITFNLLIDSYGKR-QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206 (366)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 206 (366)
+.+.|++++.. -..++..+... +..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 8 l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 34445543332 22333333332 3455666666666665555555555555555555443
No 430
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=46.74 E-value=89 Score=21.13 Aligned_cols=11 Identities=9% Similarity=0.072 Sum_probs=4.6
Q ss_pred ccCcHHHHHHH
Q 017743 238 YCDNVSRAREI 248 (366)
Q Consensus 238 ~~~~~~~a~~~ 248 (366)
..|++++|..+
T Consensus 51 NrG~Yq~Al~l 61 (115)
T TIGR02508 51 NRGDYQSALQL 61 (115)
T ss_pred ccchHHHHHHh
Confidence 34444444433
No 431
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=46.70 E-value=1.5e+02 Score=23.85 Aligned_cols=118 Identities=8% Similarity=0.021 Sum_probs=71.3
Q ss_pred HHhccCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHhhccCcH
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSKEKPTL-PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI-TYECIITMYGYCDNV 242 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 242 (366)
.|.....++.|+..|.+.+. +.|+. .-|+.-+.++.+..+++.+..--.+.++. .|+.. ..-.+..+......+
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 36667778888887777766 45555 45566677777788888777665555554 45543 333444555667778
Q ss_pred HHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 017743 243 SRAREIFDELSK----LGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286 (366)
Q Consensus 243 ~~a~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (366)
++|+..+.+... ..+.+-......|..+--..=...+..++.++
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 888888877632 34444555566555543333333344444443
No 432
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=46.49 E-value=1.5e+02 Score=23.76 Aligned_cols=57 Identities=23% Similarity=0.147 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHH
Q 017743 91 ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK-NGMIKEMESVLSRM 147 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~ 147 (366)
.+++.+-+.++++++.+.+.++...+...+..--+.+-.+|-. .|....+.+++..+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 3455566666777777777776666555555544444444422 23333444444443
No 433
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=46.25 E-value=2.6e+02 Score=26.37 Aligned_cols=167 Identities=14% Similarity=0.149 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHH-hcCChhHHHHHHHHHHhcCCCCChh-----hHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCC---C
Q 017743 11 TGIYSKLIAVMG-KKGQTRLAMWLFSEMRNSGCRPDPS-----VYNALITAHLHTRDKAKALAKALGYFQKMKGME---R 81 (366)
Q Consensus 11 ~~~~~~li~~~~-~~~~~~~A~~~~~~~~~~g~~p~~~-----~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~---~ 81 (366)
..++-.+...+. ...+++.|...+++.....-+++.. ....++..+.+.+ ...|...+++..+.. +
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~-----~~~a~~~l~~~I~~~~~~~ 133 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTN-----PKAALKNLDKAIEDSETYG 133 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcC-----HHHHHHHHHHHHHHHhccC
Confidence 344555666666 6788999999999875443222221 1123334443322 222666666644321 1
Q ss_pred CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHH--hcCCHHHHHHHHHHHHHCC----
Q 017743 82 CKPNIVTYNIL-LRACAQARNVDQVNALFKELHESI---LAPDIYTYNGVMDAYG--KNGMIKEMESVLSRMKSNQ---- 151 (366)
Q Consensus 82 ~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---- 151 (366)
..+-...|..+ +..+...++...|.+.++.+...- ..|-..++..++.+.. +.+..+++.+.++.+....
T Consensus 134 ~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q 213 (608)
T PF10345_consen 134 HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQ 213 (608)
T ss_pred chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcc
Confidence 12223334444 333434479999999998887643 2233444444555443 4565677777777663321
Q ss_pred -----CCCCHHHHHHHHHHHh--ccCChhHHHHHHHHH
Q 017743 152 -----CKPDIITFNLLIDSYG--KRQAFDKMEQVFKSL 182 (366)
Q Consensus 152 -----~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 182 (366)
..|...+|..+++.++ ..|+++.+...++++
T Consensus 214 ~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 214 LDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2345667777776654 467766666555544
No 434
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=45.54 E-value=2.9e+02 Score=26.60 Aligned_cols=43 Identities=14% Similarity=0.113 Sum_probs=21.9
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017743 70 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE 114 (366)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 114 (366)
...+....+..|+..+......+++.. .|++..+..+++++..
T Consensus 184 ~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 184 ADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 333433333344555555555555433 4666666666665544
No 435
>PRK09857 putative transposase; Provisional
Probab=45.36 E-value=1.8e+02 Score=24.29 Aligned_cols=64 Identities=8% Similarity=-0.013 Sum_probs=31.1
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC
Q 017743 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225 (366)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 225 (366)
.++.-....++.++..++++.+.+. .+........+..-+.+.|.-+++.++..+|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3343334445555455555544443 222222333444444555555566666666666665544
No 436
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.36 E-value=1.1e+02 Score=21.67 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 017743 104 QVNALFKELHESILAPD-IYTYNGVMDAYGKNGMIKEMESVLSR 146 (366)
Q Consensus 104 ~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 146 (366)
.+.++|..|...|+-.. +.-|......+...|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777776664433 33355555666667777777777654
No 437
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=45.32 E-value=75 Score=19.87 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=26.4
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhch
Q 017743 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 311 (366)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 311 (366)
..|+.+.+.+++++....|..|.......+.-+..+.|+
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 457778888888888877777766666666666655553
No 438
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=44.67 E-value=61 Score=22.25 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 017743 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGK 203 (366)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 203 (366)
|.++++.+.+.+...+..|....+..+..
T Consensus 19 a~ei~~~l~~~~~~i~~~TVYR~L~~L~~ 47 (116)
T cd07153 19 AEEIYERLRKKGPSISLATVYRTLELLEE 47 (116)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 33333333333333333333333333333
No 439
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=44.56 E-value=1.5e+02 Score=23.07 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=21.1
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
..+.++..|...|+++.|.++|.-+...
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 4567777777788888888888877765
No 440
>PRK09462 fur ferric uptake regulator; Provisional
Probab=44.33 E-value=1.2e+02 Score=22.04 Aligned_cols=37 Identities=16% Similarity=0.428 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 017743 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277 (366)
Q Consensus 241 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 277 (366)
..-.|.++++.+.+.++..+..|.-.-+..+...|-.
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3456666666666655555555554555555555543
No 441
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=44.09 E-value=3e+02 Score=26.46 Aligned_cols=45 Identities=7% Similarity=-0.011 Sum_probs=27.5
Q ss_pred hHHHHHHHHHH-hCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 017743 208 GKAEYVFQKMT-AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 208 ~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (366)
++....+.... ..|+..+......++... .|++..+..+++.+..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 34444444433 446666776676666654 5778888877776654
No 442
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=43.13 E-value=47 Score=16.87 Aligned_cols=13 Identities=15% Similarity=0.018 Sum_probs=5.8
Q ss_pred hhHHHHHHHHhhh
Q 017743 277 PTEADLLFENSHN 289 (366)
Q Consensus 277 ~~~a~~~~~~~~~ 289 (366)
++.|..+|++...
T Consensus 3 ~dRAR~IyeR~v~ 15 (32)
T PF02184_consen 3 FDRARSIYERFVL 15 (32)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 443
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=42.69 E-value=62 Score=23.24 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 017743 298 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341 (366)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 341 (366)
|...++.+. +.|-..+...++++|.++|++.+...|..+++-.
T Consensus 112 tlGvL~~ak-~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 112 TLGVLALAK-SKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred hhHHHHHHH-HcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 344444333 3355556666777777777777777666666544
No 444
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=42.50 E-value=2.1e+02 Score=24.26 Aligned_cols=117 Identities=9% Similarity=0.065 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc---cCcHHHHHHHHH
Q 017743 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY---CDNVSRAREIFD 250 (366)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~ 250 (366)
.-+.++++.++.+ +.+......++..+.+..+.+...+-++.+.... +-+...|...+..... .-.++....+|.
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 3445555555552 2455555566666666666666666666666542 2244555555544332 123444444444
Q ss_pred HHHhC------CC----CCC-------HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 017743 251 ELSKL------GK----DMK-------VSTLNAMLEAYCMNGLPTEADLLFENSHNMGV 292 (366)
Q Consensus 251 ~~~~~------~~----~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 292 (366)
+.... +. .+. ...+..+.......|..+.|..+++.+.+.++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 33211 10 011 12233333344568888888888888887654
No 445
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=42.27 E-value=1.3e+02 Score=21.90 Aligned_cols=82 Identities=15% Similarity=0.110 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHH
Q 017743 88 TYNILLRACAQARNVDQVNALFKELHESI-----LAPDIYTYNGVMDAYGKNGM-IKEMESVLSRMKSNQCKPDIITFNL 161 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (366)
..|.++.-....+.+....++++.+.... -..+...|..++.+..+... ---+..+|.-+.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 46777777777778887777777764321 02345567777777765555 3345667777777667777777777
Q ss_pred HHHHHhcc
Q 017743 162 LIDSYGKR 169 (366)
Q Consensus 162 l~~~~~~~ 169 (366)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77766554
No 446
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.95 E-value=2.4e+02 Score=24.78 Aligned_cols=174 Identities=13% Similarity=0.038 Sum_probs=98.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCChhHHHHHHHHHHhc---------CCCC
Q 017743 122 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK---PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS---------KEKP 189 (366)
Q Consensus 122 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~ 189 (366)
..+.-+...|...|+++.|++.|...... +. ..+..|-.+|..-.-.|+|.....+..+.... .+++
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 45677888899999999999999996543 22 23445556666666778888777776666543 1233
Q ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC-C-----CCCCHHHHHHHHHHhhccCcHHHHHHH-----HHHHHhCCCC
Q 017743 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAM-K-----YTPSFITYECIITMYGYCDNVSRAREI-----FDELSKLGKD 258 (366)
Q Consensus 190 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~-----~~~~~~~~~~ 258 (366)
....+..+...+. +++..|.+.|-..... . +.|...+....+.+++--++-+--..+ |+.+.+.
T Consensus 230 kl~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel--- 304 (466)
T KOG0686|consen 230 KLKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLEL--- 304 (466)
T ss_pred chHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhc---
Confidence 3444444444333 3666666555433221 1 234444444444455444443322222 2233332
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-----CCCCCHHHHHHHHH
Q 017743 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNM-----GVTPDSSTYKLLYK 304 (366)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~~~~~l~~ 304 (366)
.+..+..+..-| .+++...+++++++... -+.|...+...+|+
T Consensus 305 -~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 305 -EPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred -ChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 445555555544 35788888888887643 24556666555554
No 447
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=41.22 E-value=89 Score=19.53 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 017743 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274 (366)
Q Consensus 241 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 274 (366)
+.+.|..++..+...... ++..||++...+.++
T Consensus 12 DtEmA~~mL~DLr~dekR-sPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKR-SPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchhhc-ChHHHHHHHHHHHHc
Confidence 456677777776655433 677888777666554
No 448
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.54 E-value=3.7e+02 Score=26.44 Aligned_cols=35 Identities=11% Similarity=0.052 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 017743 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 276 (366)
...+...++.....-..-++..+|.++..|++..+
T Consensus 609 ~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~ 643 (911)
T KOG2034|consen 609 ENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER 643 (911)
T ss_pred HHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc
Confidence 33444544444444334478888888888887644
No 449
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=40.38 E-value=63 Score=22.44 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=21.6
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 017743 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205 (366)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 205 (366)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344444444445555566666655555555554444444444443
No 450
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.81 E-value=4.4e+02 Score=27.08 Aligned_cols=52 Identities=4% Similarity=-0.113 Sum_probs=25.0
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCcHhHHH
Q 017743 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT----LPTFNSMIINYGKARLQGKAE 211 (366)
Q Consensus 159 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~ 211 (366)
|..+++.+-..+-.+.+.++-...++. .+++ ..+++.+.......|.+-+|.
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy 1041 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAY 1041 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHH
Confidence 444555555555556555555555443 2221 223444444445555555543
No 451
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=39.77 E-value=4.5e+02 Score=27.20 Aligned_cols=152 Identities=6% Similarity=-0.065 Sum_probs=87.7
Q ss_pred HhcCCHHHHHH------HHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHH-------hcCCCCCHHHHHHHH
Q 017743 132 GKNGMIKEMES------VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM-------HSKEKPTLPTFNSMI 198 (366)
Q Consensus 132 ~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~li 198 (366)
...|.+.++.+ ++......-.++....|..+...+.+.++.++|+..-.... .....-+...|..+.
T Consensus 943 ~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla 1022 (1236)
T KOG1839|consen 943 LLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA 1022 (1236)
T ss_pred hcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH
Confidence 34455555555 44432222224456667777778888899988887654331 111122344555555
Q ss_pred HHHHhcCcHhHHHHHHHHHHhC-------CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC-----C--CCCHHHH
Q 017743 199 INYGKARLQGKAEYVFQKMTAM-------KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG-----K--DMKVSTL 264 (366)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~--~~~~~~~ 264 (366)
..+...+....|...+.+.... ..+|...+++.+-..+...++.+.|.+.++.+.... . -.+..++
T Consensus 1023 l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~ 1102 (1236)
T KOG1839|consen 1023 LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSY 1102 (1236)
T ss_pred HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHH
Confidence 5555666777777666655432 123444455555555555678888888888776532 1 1245667
Q ss_pred HHHHHHHHhcCChhHHHHH
Q 017743 265 NAMLEAYCMNGLPTEADLL 283 (366)
Q Consensus 265 ~~li~~~~~~g~~~~a~~~ 283 (366)
..+.+.+...+++..|...
T Consensus 1103 ~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1103 HALARLFESMKDFRNALEH 1121 (1236)
T ss_pred HHHHHHHhhhHHHHHHHHH
Confidence 7777777777776665443
No 452
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.70 E-value=2.5e+02 Score=24.28 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=30.0
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH----HhhchHHHHHHHHHHHHhCC
Q 017743 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY----TKANMKELVQKLLKRMEQNG 326 (366)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~~~~~~a~~~~~~m~~~g 326 (366)
+.++..-+......+.++.+.-=..||.++--.+ ...+..++|.+..-+|.+.|
T Consensus 289 kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 289 KDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 3455555555555555554444455555543322 24456667777777777654
No 453
>PRK13342 recombination factor protein RarA; Reviewed
Probab=39.60 E-value=2.7e+02 Score=24.66 Aligned_cols=33 Identities=21% Similarity=0.094 Sum_probs=18.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 017743 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166 (366)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (366)
.++.+.|+..+..|.+.|..|....-..++.++
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 356666666666666666555544444444443
No 454
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=39.40 E-value=3.7e+02 Score=26.19 Aligned_cols=100 Identities=12% Similarity=0.161 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (366)
+...+..||..+.+.|++++....-..|.+.- ..++..|...+......- ..+....+..+|++..... .++..|
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt-~s~~~~~v~~~~ekal~dy---~~v~iw 186 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMT-QSEERKEVEELFEKALGDY---NSVPIW 186 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhc-cCcchhHHHHHHHHHhccc---ccchHH
Confidence 34457778999999999988888777776642 335566666655543322 2255777788888877532 223333
Q ss_pred HHHHHHHH-------hcCCHHHHHHHHHHHHH
Q 017743 90 NILLRACA-------QARNVDQVNALFKELHE 114 (366)
Q Consensus 90 ~~l~~~~~-------~~~~~~~a~~~~~~~~~ 114 (366)
.-.+..+. ..++++....+|.+.++
T Consensus 187 ~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 187 EEVVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHh
Confidence 33333222 23556666777776654
No 455
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=39.10 E-value=1.8e+02 Score=22.51 Aligned_cols=173 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 017743 114 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN--------QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 185 (366)
Q Consensus 114 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 185 (366)
+.|..++...++.++..+.+..-...-...+-.++.+ +...+......-+..|-..|||...-.+|-.....
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Q ss_pred CCCCC--HHHHHHHHHHHHhc--CcHhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 017743 186 KEKPT--LPTFNSMIINYGKA--RLQGKAEYVFQKMTAMKYTPSF-------ITYECIITMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 186 ~~~~~--~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (366)
-..++ ......+..++.+. .+..--.-.|.+..-.+.+.|. .+--+++-.|-+..++.++.++++.|.+
T Consensus 81 ce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~e 160 (233)
T PF14669_consen 81 CEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHE 160 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCCCCH--------------HHHHHHHHHHHhcCChhHHHHHHHH
Q 017743 255 LGKDMKV--------------STLNAMLEAYCMNGLPTEADLLFEN 286 (366)
Q Consensus 255 ~~~~~~~--------------~~~~~li~~~~~~g~~~~a~~~~~~ 286 (366)
..+..+. ...|.....|.+.|..+.|+.++++
T Consensus 161 l~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 161 LQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 456
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.03 E-value=3.1e+02 Score=25.20 Aligned_cols=73 Identities=11% Similarity=0.077 Sum_probs=38.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C------------CChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 017743 80 ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL-A------------PDIYTYNGVMDAYGKNGMIKEMESVLSR 146 (366)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 146 (366)
.|+..+......++.. ..|++..|..+++++...|- . ++......++.++. .++.+.++.++++
T Consensus 194 egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l~~~~~ 270 (509)
T PRK14958 194 ENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLLGCVTR 270 (509)
T ss_pred cCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 4555555555555443 25777777777766654330 0 11122223333333 3666777777777
Q ss_pred HHHCCCCCC
Q 017743 147 MKSNQCKPD 155 (366)
Q Consensus 147 ~~~~~~~~~ 155 (366)
+...|..|.
T Consensus 271 l~~~g~~~~ 279 (509)
T PRK14958 271 LVEQGVDFS 279 (509)
T ss_pred HHHcCCCHH
Confidence 777666543
No 457
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.96 E-value=3.1e+02 Score=25.19 Aligned_cols=35 Identities=9% Similarity=0.005 Sum_probs=21.3
Q ss_pred HhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 017743 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (366)
.+.|+..+......++... .|++..|..+++.+..
T Consensus 192 ~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia 226 (509)
T PRK14958 192 KEENVEFENAALDLLARAA--NGSVRDALSLLDQSIA 226 (509)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHh
Confidence 3456666666666555543 4777777777766544
No 458
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=38.78 E-value=2.2e+02 Score=23.45 Aligned_cols=51 Identities=6% Similarity=-0.100 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHHhcCCCC
Q 017743 136 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQVFKSLMHSKEKP 189 (366)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 189 (366)
+..+|.+++....+.|.. .....+...|.. ..+..+|...|++..+.|..+
T Consensus 92 ~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~ 146 (292)
T COG0790 92 DKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVE 146 (292)
T ss_pred cHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChh
Confidence 455666666655555422 222223333332 336666666666666665443
No 459
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.77 E-value=22 Score=29.89 Aligned_cols=87 Identities=16% Similarity=0.077 Sum_probs=37.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHhhccCcHHHHHH
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF-ITYECIITMYGYCDNVSRARE 247 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~ 247 (366)
.|.++.|++.|...+.. .++....|..-.+++.+.+.+..|++=+...... .||. ..|-.--.+-...|++.+|..
T Consensus 127 ~G~~~~ai~~~t~ai~l-np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIEL-NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred Ccchhhhhccccccccc-CCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHHH
Confidence 34455555555555443 2223333444444445555555555444444433 2221 122222222223455555555
Q ss_pred HHHHHHhCCCC
Q 017743 248 IFDELSKLGKD 258 (366)
Q Consensus 248 ~~~~~~~~~~~ 258 (366)
.+....+.+..
T Consensus 204 dl~~a~kld~d 214 (377)
T KOG1308|consen 204 DLALACKLDYD 214 (377)
T ss_pred HHHHHHhcccc
Confidence 55555554443
No 460
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=38.70 E-value=1.1e+02 Score=19.92 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=20.1
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017743 107 ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 148 (366)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 148 (366)
++|+-....|+..|...|..++..+.-+=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444444555555555555544444444444444444443
No 461
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=38.64 E-value=2.6e+02 Score=24.68 Aligned_cols=18 Identities=17% Similarity=-0.060 Sum_probs=8.1
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 017743 129 DAYGKNGMIKEMESVLSR 146 (366)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~ 146 (366)
-+|.-.+++.+|.+.|-.
T Consensus 280 FayLmmrryadai~~F~n 297 (525)
T KOG3677|consen 280 FAYLMMRRYADAIRVFLN 297 (525)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444455444443
No 462
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=38.62 E-value=2.4e+02 Score=23.71 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=10.0
Q ss_pred cCCHHHHHHHHHHHHhc
Q 017743 8 IADTGIYSKLIAVMGKK 24 (366)
Q Consensus 8 ~~~~~~~~~li~~~~~~ 24 (366)
..|...|..++..+...
T Consensus 15 ~Yd~~~~~~l~~~L~~~ 31 (324)
T PF11838_consen 15 NYDEENWDALIKQLQSN 31 (324)
T ss_dssp EECTTHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHhcC
Confidence 34566677766665543
No 463
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=37.91 E-value=3.9e+02 Score=25.94 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=23.3
Q ss_pred cCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 017743 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEM 37 (366)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 37 (366)
.+.......+++++...|+++-|.+++..-
T Consensus 429 l~~~~~~~~~l~~LL~~~~f~la~~~~~~~ 458 (715)
T PF08314_consen 429 LSKDEIEEIFLEALLSSGRFSLAKSLYEES 458 (715)
T ss_dssp S-HHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHhcC
Confidence 445567788999999999999999998874
No 464
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=37.50 E-value=2.5e+02 Score=23.64 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhcCChhHH
Q 017743 262 STLNAMLEAYCMNGLPTEA 280 (366)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a 280 (366)
..|.-|+.+++..|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3455555555555554433
No 465
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=37.26 E-value=1.2e+02 Score=19.88 Aligned_cols=31 Identities=16% Similarity=-0.032 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
|...--.+...+...|++++|++.+-.+.+.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4444455555555555555555555555443
No 466
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.73 E-value=4.9e+02 Score=26.77 Aligned_cols=124 Identities=14% Similarity=0.036 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILAPD----IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (366)
..|...++.+-+.+..+.+.++-...++. ++++ ..+++.+.+.....|.+-+|.+.+-.-... .........+
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRql 1060 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHH
Confidence 45677778888888888888877766654 2222 234566667777777777766554432111 1112334445
Q ss_pred HHHHhccCChh------------HHHH-HHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHH
Q 017743 163 IDSYGKRQAFD------------KMEQ-VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213 (366)
Q Consensus 163 ~~~~~~~~~~~------------~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 213 (366)
+..++.+|.++ +... +++..-..........|..+-..+...+++.+|-.+
T Consensus 1061 vivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1061 VIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 55555665543 3333 233222222222233455555555666676665544
No 467
>COG0819 TenA Putative transcription activator [Transcription]
Probab=36.53 E-value=2.2e+02 Score=22.62 Aligned_cols=29 Identities=10% Similarity=0.179 Sum_probs=16.9
Q ss_pred HHhCCCCCCHHHHHHHHHHhhccCcHHHH
Q 017743 217 MTAMKYTPSFITYECIITMYGYCDNVSRA 245 (366)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 245 (366)
+.+....|....|+..+...+..|++.+.
T Consensus 100 ~~~~~~~~~~~aYt~ym~~~~~~g~~~~~ 128 (218)
T COG0819 100 LLKTEPSPANKAYTRYLLDTAYSGSFAEL 128 (218)
T ss_pred HHhcCCCchHHHHHHHHHHHHhcCCHHHH
Confidence 34444455566666666666666665543
No 468
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=36.37 E-value=3e+02 Score=24.14 Aligned_cols=222 Identities=10% Similarity=0.086 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHh
Q 017743 134 NGMIKEMESVLSRMKSN-----QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 208 (366)
Q Consensus 134 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 208 (366)
.++.+.|++-+-...+. ....+..++..++..|...++|+.--+....+...........-..+-.++.......
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~ 104 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQLKQAIQSMVQQAMTYIDGTP 104 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCC
Q ss_pred HHHHHHHHHHhCCCCCCHHHH---------HHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHH------------
Q 017743 209 KAEYVFQKMTAMKYTPSFITY---------ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM------------ 267 (366)
Q Consensus 209 ~a~~~~~~~~~~~~~~~~~~~---------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------ 267 (366)
.-..-..-+...........| ..|...+-..|+.++|..++.++. +.||.++
T Consensus 105 d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQ 177 (439)
T KOG1498|consen 105 DLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQ 177 (439)
T ss_pred CchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHH
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCC------HHHHHHHHHHHHhhchHHHHHHHHHHHHhC-CCCCChhHHHHHHHH
Q 017743 268 LEAYCMNGLPTEADLLFENSHNMGVTPD------SSTYKLLYKAYTKANMKELVQKLLKRMEQN-GIVPNKRFFLEALET 340 (366)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~ 340 (366)
++.|...+++-.|.-+-.+....=+.-+ ..-|..+++...+.+.+=.+.+.|+...+. .+..|+.-+...+.+
T Consensus 178 mrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~ 257 (439)
T KOG1498|consen 178 MRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRS 257 (439)
T ss_pred HHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhh
Q ss_pred hhcccccCCCCCccchhhhhhh
Q 017743 341 FSSSLAGSQSGSAKTDLTRSLS 362 (366)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~r~~~ 362 (366)
....--.......++++.-..+
T Consensus 258 iv~f~~LAp~dneQsdll~~is 279 (439)
T KOG1498|consen 258 IVSFCVLAPHDNEQSDLLARIS 279 (439)
T ss_pred heeEEeecCCCcHHHHHHHHHh
No 469
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=36.17 E-value=1.4e+02 Score=20.41 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=13.4
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHh
Q 017743 159 FNLLIDSYGKRQAFDKMEQVFKSLMH 184 (366)
Q Consensus 159 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (366)
|..++..|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44455555555555555555555444
No 470
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=35.45 E-value=2.3e+02 Score=22.59 Aligned_cols=99 Identities=15% Similarity=0.055 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC---CHHHH--HHHHHHhhccCcHHHHHHHHHHHHhCCCCCCH
Q 017743 187 EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP---SFITY--ECIITMYGYCDNVSRAREIFDELSKLGKDMKV 261 (366)
Q Consensus 187 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 261 (366)
+.+...-++.|+--|.-...+.+|...|..-. ++.| +..++ ..-|......|+.+.|.+....+...-+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 44445555555555555555555555554322 2222 22222 34455566777777777777665543233233
Q ss_pred HHHHHHHH----HHHhcCChhHHHHHHHHh
Q 017743 262 STLNAMLE----AYCMNGLPTEADLLFENS 287 (366)
Q Consensus 262 ~~~~~li~----~~~~~g~~~~a~~~~~~~ 287 (366)
..+-.|.. -..+.|..++|+++.+.-
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22222211 234566666666666543
No 471
>PRK11619 lytic murein transglycosylase; Provisional
Probab=35.37 E-value=4.1e+02 Score=25.42 Aligned_cols=118 Identities=8% Similarity=-0.035 Sum_probs=75.7
Q ss_pred cCcHhHHHHHHHHHHhCC-CCCCH--HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 017743 204 ARLQGKAEYVFQKMTAMK-YTPSF--ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280 (366)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 280 (366)
..+.+.|..++....... ..+.. .++..+.......+...++...++...... .+......-+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 356678888888764432 22222 233444444444332456666666544332 2445556666666789999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 281 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
...+..|.... .-...-..-+.+++...|+.++|..+|+....
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999886543 33556667788888889999999999999744
No 472
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=35.26 E-value=3.6e+02 Score=24.81 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=15.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017743 80 ERCKPNIVTYNILLRACAQARNVDQVNALFKELH 113 (366)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 113 (366)
.++..+......++.. ..|++..|...++++.
T Consensus 203 egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai 234 (507)
T PRK06645 203 ENLKTDIEALRIIAYK--SEGSARDAVSILDQAA 234 (507)
T ss_pred cCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 3444444444444432 3456666666666553
No 473
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=34.95 E-value=7e+02 Score=28.06 Aligned_cols=62 Identities=8% Similarity=-0.112 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 261 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
..+|....+....+|.++.|...+-...+.+ -+..+.-.+.-....|+...|+.++++..+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 5678888888888999999987777666654 2355566677788899999999999988754
No 474
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=34.87 E-value=1e+02 Score=18.48 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=13.3
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 017743 273 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304 (366)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 304 (366)
..|++=+|-++++.+=.....|....+..+|.
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq 42 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQ 42 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHH
Confidence 34555555555555443222223334444444
No 475
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=34.55 E-value=1.1e+02 Score=21.26 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=6.0
Q ss_pred HHHHHHHhcCCCCCC
Q 017743 70 LGYFQKMKGMERCKP 84 (366)
Q Consensus 70 ~~~~~~~~~~~~~~~ 84 (366)
.+.+.++....|+.|
T Consensus 9 ~~~L~~Lk~~tgi~~ 23 (113)
T PF08870_consen 9 KEQLKKLKRRTGITP 23 (113)
T ss_pred HHHHHHHHHhcCCCc
Confidence 333444443344444
No 476
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.37 E-value=3.1e+02 Score=23.77 Aligned_cols=198 Identities=11% Similarity=0.061 Sum_probs=92.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHH-----HCC-CCCCHHH
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDI----YTYNGVMDAYGKNGMIKEMESVLSRMK-----SNQ-CKPDIIT 158 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~-~~~~~~~ 158 (366)
.+.+-.++.+.+.+....++..+.+..- .|.. .....++..+.+.+++.-++..++.-. ..+ .+|...
T Consensus 105 c~~l~~~~~~~~~p~~gi~ii~~av~k~-~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~f- 182 (422)
T KOG2582|consen 105 CHDLTEAVVKKNKPLRGIRIIMQAVDKM-QPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYF- 182 (422)
T ss_pred HHHHHHHHHhcCCccccchHHHHHHHHh-ccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHH-
Confidence 3445555666666555555554444331 1221 223345555666666655544443211 111 122211
Q ss_pred HHHHHH---HHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH--------HhcCcH--------hHHHHHHHHHHh
Q 017743 159 FNLLID---SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY--------GKARLQ--------GKAEYVFQKMTA 219 (366)
Q Consensus 159 ~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--------~~~~~~--------~~a~~~~~~~~~ 219 (366)
+..... .|...++++.|..++....-. |....-...+.+| .-.|+. ..+.+.++.|..
T Consensus 183 L~Y~yYgg~iciglk~fe~Al~~~e~~v~~---Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~ 259 (422)
T KOG2582|consen 183 LLYLYYGGMICIGLKRFERALYLLEICVTT---PAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSN 259 (422)
T ss_pred HHHHHhcceeeeccccHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCc
Confidence 111111 145678999999999887542 3322222223332 233443 223333333220
Q ss_pred -------CCCCCCHHHHHHHHH----HhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHhcCChhHHHHHH
Q 017743 220 -------MKYTPSFITYECIIT----MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML----EAYCMNGLPTEADLLF 284 (366)
Q Consensus 220 -------~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~a~~~~ 284 (366)
.-..........++. .+.+-++..-+...+..+.++++.--..+|.+|= .-..+.+..++|.+..
T Consensus 260 pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~I 339 (422)
T KOG2582|consen 260 PYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYI 339 (422)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHH
Confidence 000011111333332 2334566666667777766665443445555442 2233557778888877
Q ss_pred HHhhhCC
Q 017743 285 ENSHNMG 291 (366)
Q Consensus 285 ~~~~~~~ 291 (366)
-+|.+.|
T Consensus 340 lqmie~~ 346 (422)
T KOG2582|consen 340 LQMIEDG 346 (422)
T ss_pred HHHhccC
Confidence 7777654
No 477
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=34.34 E-value=81 Score=20.34 Aligned_cols=49 Identities=18% Similarity=0.104 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhh
Q 017743 259 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309 (366)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 309 (366)
|.+.....++..+.. ++++++...+.++...|+.+ ......+.......
T Consensus 3 p~~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~-~~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 3 PPPEVIEEILESCLN-GDFKEARKKLYELLVEGYSA-SDILKQLHEVLVES 51 (89)
T ss_dssp --HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--H-HHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHh
Confidence 345555566665544 47777777777777766553 33344444444443
No 478
>PRK10941 hypothetical protein; Provisional
Probab=34.23 E-value=2.7e+02 Score=23.00 Aligned_cols=54 Identities=7% Similarity=-0.139 Sum_probs=22.4
Q ss_pred HHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 233 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 233 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
-.+|.+.++++.|.++.+.+....+. ++.-+.--.-.|.+.|.+..|..=++..
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~f 241 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYF 241 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 33444444444444444444443322 3333333333344444444444444333
No 479
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.11 E-value=3.4e+02 Score=24.10 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=11.8
Q ss_pred CcHhHHHHHHHHHHhCCCCCC
Q 017743 205 RLQGKAEYVFQKMTAMKYTPS 225 (366)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~ 225 (366)
.+.+.|..++..|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 455555666666665554444
No 480
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=34.04 E-value=4.4e+02 Score=25.46 Aligned_cols=184 Identities=7% Similarity=0.036 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 017743 66 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH-ESILAPDIYTYNGVMDAYGKNGMIKEMESVL 144 (366)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 144 (366)
+.+.+...+.+.+....+.....--.+-..|...|++++|+.+--... ...+.++...+.+++.-|... -.+++.+.+
T Consensus 39 Isd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~~ 117 (929)
T KOG2062|consen 39 ISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASETY 117 (929)
T ss_pred hhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHHh
Confidence 344445555555433222112222233466778888888887653332 122445555555555444322 112222222
Q ss_pred HHHH-HCCCCCC-HHHHHHHHHHHhccCChhHHHH---------HHHHH-HhcCCCCCHHHHHHHHHHHHhcCc-HhHHH
Q 017743 145 SRMK-SNQCKPD-IITFNLLIDSYGKRQAFDKMEQ---------VFKSL-MHSKEKPTLPTFNSMIINYGKARL-QGKAE 211 (366)
Q Consensus 145 ~~~~-~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~---------~~~~~-~~~~~~~~~~~~~~li~~~~~~~~-~~~a~ 211 (366)
..-. ..++++. ......++..|...+++..|+- ++++. .+....++ ..+.++..+..... .+--.
T Consensus 118 ~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~--~~~yll~l~~s~v~~~efR~ 195 (929)
T KOG2062|consen 118 KNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIG--NLTYLLELLISLVNNREFRN 195 (929)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccch--HHHHHHHHHHHHHhhHHHHH
Confidence 2111 1111111 1223344444544445444432 33332 22212222 23333333332222 22233
Q ss_pred HHHHHHHh---CCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 212 YVFQKMTA---MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 212 ~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
++++.+.+ ....|| |..+.+++....+.+.+.++++.+.+.
T Consensus 196 ~vlr~lv~~y~~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 196 KVLRLLVKTYLKLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred HHHHHHHHHHccCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 33333332 233555 566778888899999999999999885
No 481
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=33.99 E-value=2e+02 Score=25.97 Aligned_cols=108 Identities=12% Similarity=-0.090 Sum_probs=0.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhh--------HHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCC----
Q 017743 94 RACAQARNVDQVNALFKELHESILAPDIYT--------YNGVMDAYGKNGMIKEMESVLSRMKS-------NQCKP---- 154 (366)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~~~---- 154 (366)
..+.-.|++..|.+++...--...+-...| +|.+...+.+.|.+..+..+|....+ .|+.|
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Q ss_pred ------CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 017743 155 ------DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202 (366)
Q Consensus 155 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 202 (366)
+-.......-.|...|++-.|.+.|.+..+. ...++..|..+..+|.
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
No 482
>PRK10941 hypothetical protein; Provisional
Probab=33.59 E-value=2.7e+02 Score=22.94 Aligned_cols=59 Identities=7% Similarity=-0.093 Sum_probs=29.7
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 196 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
.+-.+|.+.++++.|.++.+.+.... +.++.-+.--.-.|.+.|.+..|..-++...+.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 33444555555555555555555543 223334444444455555555555555555443
No 483
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=32.98 E-value=4e+02 Score=24.60 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=13.4
Q ss_pred HHHHHHhccCChhHHHHHHHHH
Q 017743 161 LLIDSYGKRQAFDKMEQVFKSL 182 (366)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~ 182 (366)
.++.-|.+.+++++|..++..|
T Consensus 413 eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhC
Confidence 3455566666666666666555
No 484
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=32.71 E-value=2.8e+02 Score=22.73 Aligned_cols=27 Identities=7% Similarity=0.054 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017743 88 TYNILLRACAQARNVDQVNALFKELHE 114 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 114 (366)
....+++.+.+.+....|..+.+.+..
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhcc
Confidence 345677777777777777777777653
No 485
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=32.42 E-value=3.3e+02 Score=23.44 Aligned_cols=46 Identities=11% Similarity=0.067 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 017743 262 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307 (366)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 307 (366)
..|-.++......|.++.++.+|++++..|..|-...-..++..+.
T Consensus 141 KYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 141 KYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4466666666667777777777777777777766555555555543
No 486
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=32.08 E-value=3.3e+02 Score=23.37 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=13.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 017743 16 KLIAVMGKKGQTRLAMWLFSEMR 38 (366)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~ 38 (366)
.+++.|.+.|.+++|.++.....
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~ 133 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVR 133 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHH
Confidence 35566666666666666665543
No 487
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.01 E-value=3e+02 Score=22.95 Aligned_cols=110 Identities=6% Similarity=0.106 Sum_probs=59.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 017743 92 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171 (366)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (366)
++....+.++.....+.+..+. ....-...+..+...|++..|++++.+..+. .. ...-++.+=.. ..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L---~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHL---SSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHH---hHH
Confidence 3444444555555555555543 2233455677788899999999999887653 10 10111111111 112
Q ss_pred hhHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCcHhHHHH
Q 017743 172 FDKMEQVFKSLMHSK-----EKPTLPTFNSMIINYGKARLQGKAEY 212 (366)
Q Consensus 172 ~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~ 212 (366)
+.+.....+.+++.. ..-|+..|..+..+|.-.|+...+.+
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 222222222222211 14588899999999998887766543
No 488
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=31.91 E-value=1.7e+02 Score=20.02 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=8.0
Q ss_pred HHHHHHHHHhcCCCCCC
Q 017743 68 KALGYFQKMKGMERCKP 84 (366)
Q Consensus 68 ~a~~~~~~~~~~~~~~~ 84 (366)
+|.+.+.+++...|+.|
T Consensus 6 ~a~~~L~~Lk~~Tgi~~ 22 (105)
T TIGR03184 6 TAKDQLRRLKRRTGLTP 22 (105)
T ss_pred HHHHHHHHHhcccCCCc
Confidence 34444445544444444
No 489
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=31.90 E-value=2.7e+02 Score=22.43 Aligned_cols=81 Identities=16% Similarity=0.109 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-------------CC------------CCHH
Q 017743 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG-------------VT------------PDSS 297 (366)
Q Consensus 243 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------------~~------------p~~~ 297 (366)
+.|...++.-... ..++.+...+..++...|+...+.++++.+.... .. .++.
T Consensus 116 ~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vE 193 (246)
T PF07678_consen 116 NKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVE 193 (246)
T ss_dssp HHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHH
T ss_pred HHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHH
Confidence 4455555444222 2255555555566666667777777766664210 00 0133
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 298 TYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
+=...+-++.+.++.+.+..+.+-+.+.
T Consensus 194 tTaYaLLa~l~~~~~~~~~~iv~WL~~q 221 (246)
T PF07678_consen 194 TTAYALLALLKRGDLEEASPIVRWLISQ 221 (246)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4344445666668888888887777643
No 490
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.74 E-value=4e+02 Score=24.29 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=13.3
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCCCC
Q 017743 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKP 189 (366)
Q Consensus 160 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 189 (366)
..++.+....+....|+.++.++.+.|..|
T Consensus 252 ~~l~~si~~~d~~~~al~~l~~l~~~G~d~ 281 (484)
T PRK14956 252 TSFIKSLIDPDNHSKSLEILESLYQEGQDI 281 (484)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHcCCCH
Confidence 333333333333344555555555554433
No 491
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.22 E-value=4.4e+02 Score=24.57 Aligned_cols=78 Identities=14% Similarity=0.029 Sum_probs=45.9
Q ss_pred HHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHh
Q 017743 233 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC-MNGLPTEADLLFENSHNM---GVTPDSSTYKLLYKAYTK 308 (366)
Q Consensus 233 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~ 308 (366)
++.+.+.|.+..|+++.+-+.+..+.-|+.....+|..|+ +..+++-.+++++..... ..-||-.--..++..|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 3445567777778777777777665556666666776664 455666667776665432 234444333344444444
Q ss_pred hc
Q 017743 309 AN 310 (366)
Q Consensus 309 ~~ 310 (366)
..
T Consensus 429 ~~ 430 (665)
T KOG2422|consen 429 KN 430 (665)
T ss_pred cC
Confidence 33
No 492
>PF13934 ELYS: Nuclear pore complex assembly
Probab=31.07 E-value=2.7e+02 Score=22.16 Aligned_cols=97 Identities=8% Similarity=-0.071 Sum_probs=47.7
Q ss_pred hccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 017743 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246 (366)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 246 (366)
...++++.|.+.+-.- ...|+ .-..++.++...|+.+.|..+++...-.. .+......++.. ...+.+.+|+
T Consensus 89 LD~~~~~~A~~~L~~p---s~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~EAf 160 (226)
T PF13934_consen 89 LDHGDFEEALELLSHP---SLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTEAF 160 (226)
T ss_pred hChHhHHHHHHHhCCC---CCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHHHH
Confidence 3456666666665221 11111 12246666666777777777766644321 122233333333 3456677776
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 017743 247 EIFDELSKLGKDMKVSTLNAMLEAYCMN 274 (366)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~li~~~~~~ 274 (366)
..-+...+.. ....+..++..+...
T Consensus 161 ~~~R~~~~~~---~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 161 SFQRSYPDEL---RRRLFEQLLEHCLEE 185 (226)
T ss_pred HHHHhCchhh---hHHHHHHHHHHHHHH
Confidence 6555544321 134555555555543
No 493
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=30.80 E-value=2.8e+02 Score=22.26 Aligned_cols=60 Identities=7% Similarity=-0.053 Sum_probs=42.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhc
Q 017743 16 KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKG 78 (366)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (366)
.+++.+-+.++++++.+.+.++...+...+..-.+.+-.+|-. ..+....+++.+..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn---~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKN---VIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh---ccccchHHHHhhhhHhh
Confidence 4778888999999999999999998877788777777766631 33445566666665543
No 494
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=30.52 E-value=3.6e+02 Score=23.41 Aligned_cols=56 Identities=16% Similarity=0.073 Sum_probs=31.8
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCcHhHHHHHHHHHH
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG-KARLQGKAEYVFQKMT 218 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~ 218 (366)
+..+.+.|-+..|.++.+-+....+.-|+.....+|..|+ +.++++-.+++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 3445666667777766666666544445555555555553 4455555555555543
No 495
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.48 E-value=4.3e+02 Score=24.29 Aligned_cols=17 Identities=6% Similarity=-0.154 Sum_probs=9.1
Q ss_pred CChhHHHHHHHHHHhcC
Q 017743 170 QAFDKMEQVFKSLMHSK 186 (366)
Q Consensus 170 ~~~~~a~~~~~~~~~~~ 186 (366)
++.+.|..+++.+...|
T Consensus 255 ~d~~~Al~~l~~Ll~~G 271 (504)
T PRK14963 255 GDAAEALSGAAQLYRDG 271 (504)
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 55555555555555544
No 496
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=30.30 E-value=2.7e+02 Score=21.75 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHES 115 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (366)
...+.++..|...|+++.|.++|.-+++.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 34677888888899999999999888875
No 497
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=30.11 E-value=3.9e+02 Score=23.67 Aligned_cols=58 Identities=16% Similarity=0.043 Sum_probs=36.1
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhc--CCCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Q 017743 160 NLLIDSYGKRQAFDKMEQVFKSLMHS--KEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMT 218 (366)
Q Consensus 160 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 218 (366)
-.|++...-.||.....+.++.+... |-.| ...| .-+..+|...+++.+|.+.|-...
T Consensus 239 ~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 239 LGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHH
Confidence 34556666678877767777666443 2222 2233 345667777888888888887654
No 498
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.88 E-value=4.3e+02 Score=24.09 Aligned_cols=30 Identities=7% Similarity=-0.136 Sum_probs=14.1
Q ss_pred CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 017743 221 KYTPSFITYECIITMYGYCDNVSRAREIFDEL 252 (366)
Q Consensus 221 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 252 (366)
|+..+......++.. ..|+...|+.+++.+
T Consensus 197 gi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~ 226 (484)
T PRK14956 197 NVQYDQEGLFWIAKK--GDGSVRDMLSFMEQA 226 (484)
T ss_pred CCCCCHHHHHHHHHH--cCChHHHHHHHHHHH
Confidence 444444444444432 235555555555543
No 499
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=29.73 E-value=1.8e+02 Score=19.73 Aligned_cols=60 Identities=13% Similarity=0.046 Sum_probs=31.2
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHhhhCC
Q 017743 230 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG--LPTEADLLFENSHNMG 291 (366)
Q Consensus 230 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~ 291 (366)
..++.-|...+++++|...+.++.... -.......++..+...+ .-+....++..+.+.+
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~--~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPE--QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 345556666677777777776665432 23344444555554442 2233345555555444
No 500
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.14 E-value=5.1e+02 Score=24.64 Aligned_cols=102 Identities=14% Similarity=0.079 Sum_probs=0.0
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC-------------CCHHHHHHH
Q 017743 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT-------------PDSSTYKLL 302 (366)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-------------p~~~~~~~l 302 (366)
+.....-+-...+-+.+.+.|+..+......++. ...|+...++.++++....+-. ++......+
T Consensus 180 f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~L 257 (618)
T PRK14951 180 LRPMAPETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRL 257 (618)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHH
Q ss_pred HHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 017743 303 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341 (366)
Q Consensus 303 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 341 (366)
+.++.. |+...++.+++++.+.|..| ...+..++..+
T Consensus 258 ldaL~~-~d~~~al~~l~~l~~~G~~~-~~il~~l~~~~ 294 (618)
T PRK14951 258 IDALAQ-GDGRTVVETADELRLNGLSA-ASTLEEMAAVL 294 (618)
T ss_pred HHHHHc-CCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHH
Done!