Query 017743
Match_columns 366
No_of_seqs 649 out of 1542
Neff 11.9
Searched_HMMs 29240
Date Mon Mar 25 04:14:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 8.5E-35 2.9E-39 254.7 24.8 204 105-308 9-222 (501)
2 4g26_A Pentatricopeptide repea 100.0 3.1E-34 1.1E-38 251.1 24.3 206 68-274 8-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 1.8E-30 6.1E-35 235.9 35.4 333 6-349 195-568 (597)
4 2xpi_A Anaphase-promoting comp 100.0 8.3E-30 2.8E-34 231.5 35.3 223 121-348 305-533 (597)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-24 9.2E-29 184.8 38.7 300 12-324 34-333 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 2.8E-24 9.4E-29 184.7 37.1 308 8-331 64-372 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 4.6E-23 1.6E-27 180.6 37.1 316 8-338 23-369 (450)
8 3ieg_A DNAJ homolog subfamily 99.9 1.9E-20 6.6E-25 158.7 38.3 310 10-333 2-341 (359)
9 2y4t_A DNAJ homolog subfamily 99.9 1.7E-20 5.9E-25 164.2 36.4 326 8-347 57-441 (450)
10 2gw1_A Mitochondrial precursor 99.9 2.5E-20 8.5E-25 165.9 33.5 243 99-347 202-465 (514)
11 3hym_B Cell division cycle pro 99.9 4.6E-20 1.6E-24 154.6 31.8 288 7-306 18-314 (330)
12 2gw1_A Mitochondrial precursor 99.9 5.7E-20 1.9E-24 163.6 31.3 265 63-335 202-486 (514)
13 3hym_B Cell division cycle pro 99.9 2.2E-19 7.5E-24 150.4 31.9 286 43-341 19-314 (330)
14 1fch_A Peroxisomal targeting s 99.9 9.4E-20 3.2E-24 155.2 24.4 249 66-320 80-354 (368)
15 3ieg_A DNAJ homolog subfamily 99.9 1.4E-17 4.9E-22 140.9 37.3 288 9-310 35-354 (359)
16 3fp2_A TPR repeat-containing p 99.9 2.8E-18 9.6E-23 153.6 34.3 253 65-325 217-491 (537)
17 3fp2_A TPR repeat-containing p 99.9 5.2E-18 1.8E-22 151.8 35.3 322 11-347 25-478 (537)
18 4eqf_A PEX5-related protein; a 99.8 5E-19 1.7E-23 150.6 24.4 264 47-321 66-352 (365)
19 1fch_A Peroxisomal targeting s 99.8 1.7E-18 5.7E-23 147.5 27.1 268 10-287 63-356 (368)
20 4eqf_A PEX5-related protein; a 99.8 1.4E-18 5E-23 147.7 25.1 267 10-286 64-352 (365)
21 3cv0_A Peroxisome targeting si 99.8 2.4E-18 8.1E-23 143.9 25.5 233 85-322 54-312 (327)
22 3cv0_A Peroxisome targeting si 99.8 3.1E-18 1.1E-22 143.2 26.0 268 10-288 20-313 (327)
23 3mkr_A Coatomer subunit epsilo 99.8 6E-18 2.1E-22 138.7 26.4 274 18-317 6-286 (291)
24 3mkr_A Coatomer subunit epsilo 99.8 4.3E-17 1.5E-21 133.6 27.1 254 62-334 11-271 (291)
25 3spa_A Mtrpol, DNA-directed RN 99.8 4E-20 1.4E-24 167.5 7.7 151 190-345 126-286 (1134)
26 3spa_A Mtrpol, DNA-directed RN 99.8 1E-19 3.5E-24 164.9 10.2 120 85-204 126-249 (1134)
27 3uq3_A Heat shock protein STI1 99.8 1.4E-16 4.7E-21 128.4 26.1 240 86-339 5-254 (258)
28 1b89_A Protein (clathrin heavy 99.8 1.1E-17 3.8E-22 140.5 15.4 239 23-308 15-253 (449)
29 1b89_A Protein (clathrin heavy 99.8 3.1E-17 1.1E-21 137.9 17.7 268 9-318 30-304 (449)
30 2pl2_A Hypothetical conserved 99.7 4.5E-16 1.5E-20 122.0 21.3 198 120-323 4-212 (217)
31 2pl2_A Hypothetical conserved 99.7 5E-16 1.7E-20 121.8 21.1 200 83-288 2-212 (217)
32 2xm6_A Protein corresponding t 99.7 2.6E-13 8.9E-18 120.0 40.9 258 10-289 38-324 (490)
33 2xm6_A Protein corresponding t 99.7 2.1E-13 7.1E-18 120.6 40.2 291 10-325 74-396 (490)
34 3u4t_A TPR repeat-containing p 99.7 2.4E-15 8.4E-20 122.2 24.9 249 87-341 4-264 (272)
35 3uq3_A Heat shock protein STI1 99.7 2.2E-15 7.5E-20 121.3 24.0 226 11-254 5-235 (258)
36 1ouv_A Conserved hypothetical 99.7 3.2E-14 1.1E-18 115.7 30.2 225 84-326 4-252 (273)
37 1xnf_A Lipoprotein NLPI; TPR, 99.7 2E-15 7E-20 122.8 22.8 248 62-319 17-269 (275)
38 2ho1_A Type 4 fimbrial biogene 99.7 9.6E-15 3.3E-19 117.3 25.6 201 86-324 37-237 (252)
39 2vq2_A PILW, putative fimbrial 99.7 1.4E-14 4.7E-19 114.1 25.1 201 85-288 7-209 (225)
40 2h6f_A Protein farnesyltransfe 99.7 2E-14 6.8E-19 121.8 27.1 250 86-344 97-366 (382)
41 2ho1_A Type 4 fimbrial biogene 99.7 1.6E-14 5.6E-19 115.9 24.8 202 46-256 37-239 (252)
42 2vq2_A PILW, putative fimbrial 99.7 3.4E-14 1.2E-18 111.8 25.8 214 120-338 7-222 (225)
43 2ooe_A Cleavage stimulation fa 99.7 2.4E-13 8.2E-18 121.4 33.8 205 139-348 256-480 (530)
44 2q7f_A YRRB protein; TPR, prot 99.7 4.1E-15 1.4E-19 118.7 20.0 201 85-290 22-222 (243)
45 2q7f_A YRRB protein; TPR, prot 99.7 5.6E-15 1.9E-19 117.9 19.9 208 119-333 21-228 (243)
46 3u4t_A TPR repeat-containing p 99.7 6.9E-14 2.4E-18 113.6 25.6 237 11-256 3-251 (272)
47 1ouv_A Conserved hypothetical 99.7 4.6E-13 1.6E-17 108.8 30.5 207 66-291 22-252 (273)
48 4g1t_A Interferon-induced prot 99.7 8.4E-13 2.9E-17 116.1 33.6 307 9-324 49-400 (472)
49 4g1t_A Interferon-induced prot 99.7 1.1E-13 3.8E-18 121.7 27.2 315 10-332 93-467 (472)
50 1xnf_A Lipoprotein NLPI; TPR, 99.7 8.3E-15 2.9E-19 119.2 18.5 249 21-284 15-269 (275)
51 2h6f_A Protein farnesyltransfe 99.7 1.2E-13 4E-18 117.1 25.1 247 48-307 99-364 (382)
52 3ulq_A Response regulator aspa 99.6 7.2E-14 2.4E-18 119.5 23.4 297 21-324 22-367 (383)
53 2ooe_A Cleavage stimulation fa 99.6 2.7E-12 9.4E-17 114.6 34.5 308 10-325 120-492 (530)
54 2ond_A Cleavage stimulation fa 99.6 9.2E-13 3.2E-17 109.0 28.5 218 103-325 33-270 (308)
55 1xi4_A Clathrin heavy chain; a 99.6 2.1E-12 7.3E-17 121.5 32.6 276 14-344 1052-1327(1630)
56 4abn_A Tetratricopeptide repea 99.6 1.3E-13 4.5E-18 121.0 22.1 215 102-322 84-318 (474)
57 3vtx_A MAMA; tetratricopeptide 99.6 3.5E-13 1.2E-17 102.6 21.4 166 155-324 4-169 (184)
58 4abn_A Tetratricopeptide repea 99.6 1.2E-13 4.3E-18 121.1 21.3 218 62-287 80-318 (474)
59 3sf4_A G-protein-signaling mod 99.6 1.1E-13 3.6E-18 119.2 20.2 299 8-312 6-363 (406)
60 4a1s_A PINS, partner of inscut 99.6 7.2E-14 2.5E-18 120.6 18.3 132 193-324 225-371 (411)
61 3vtx_A MAMA; tetratricopeptide 99.6 6.4E-13 2.2E-17 101.1 20.9 166 85-254 4-169 (184)
62 3nf1_A KLC 1, kinesin light ch 99.6 3E-14 1E-18 118.0 14.5 240 84-324 25-306 (311)
63 3sf4_A G-protein-signaling mod 99.6 1.2E-13 3.9E-18 119.0 17.8 294 48-347 11-363 (406)
64 4a1s_A PINS, partner of inscut 99.6 6.9E-14 2.4E-18 120.7 16.3 274 11-290 48-372 (411)
65 2ond_A Cleavage stimulation fa 99.6 3.5E-12 1.2E-16 105.5 25.6 218 67-290 33-270 (308)
66 3q15_A PSP28, response regulat 99.6 3.2E-12 1.1E-16 109.0 24.8 312 6-324 5-364 (378)
67 3ro2_A PINS homolog, G-protein 99.5 3.6E-13 1.2E-17 112.6 18.1 238 88-325 45-332 (338)
68 3ro2_A PINS homolog, G-protein 99.5 3.9E-13 1.3E-17 112.4 18.0 274 11-290 5-332 (338)
69 3nf1_A KLC 1, kinesin light ch 99.5 1.6E-13 5.5E-18 113.6 12.5 171 10-184 26-223 (311)
70 1xi4_A Clathrin heavy chain; a 99.5 1.1E-10 3.7E-15 110.2 31.2 251 23-320 1088-1340(1630)
71 4i17_A Hypothetical protein; T 99.5 2.4E-11 8.1E-16 95.8 22.7 210 119-340 5-222 (228)
72 3as5_A MAMA; tetratricopeptide 99.5 9.1E-12 3.1E-16 94.5 19.3 164 157-324 9-172 (186)
73 3e4b_A ALGK; tetratricopeptide 99.5 1.3E-10 4.4E-15 101.3 27.8 192 120-327 175-389 (452)
74 1hz4_A MALT regulatory protein 99.5 1.1E-10 3.8E-15 99.2 26.5 273 13-289 16-321 (373)
75 3as5_A MAMA; tetratricopeptide 99.4 1.6E-11 5.4E-16 93.2 19.0 163 88-289 10-172 (186)
76 4i17_A Hypothetical protein; T 99.4 6.3E-11 2.2E-15 93.4 22.6 208 83-302 4-220 (228)
77 4gyw_A UDP-N-acetylglucosamine 99.4 7.2E-12 2.5E-16 114.5 19.2 165 121-289 9-173 (723)
78 3e4b_A ALGK; tetratricopeptide 99.4 1.9E-11 6.4E-16 106.6 20.6 282 17-327 9-353 (452)
79 4gyw_A UDP-N-acetylglucosamine 99.4 1.5E-11 5E-16 112.5 19.9 169 83-255 6-174 (723)
80 3ulq_A Response regulator aspa 99.4 2.2E-11 7.5E-16 104.1 19.1 226 62-289 115-367 (383)
81 1hz4_A MALT regulatory protein 99.4 6.4E-10 2.2E-14 94.6 26.7 284 62-346 26-351 (373)
82 3edt_B KLC 2, kinesin light ch 99.4 6.7E-12 2.3E-16 102.2 13.3 228 97-325 12-281 (283)
83 3edt_B KLC 2, kinesin light ch 99.4 1.2E-11 4.1E-16 100.7 13.7 224 64-289 22-280 (283)
84 3q15_A PSP28, response regulat 99.3 3.1E-10 1.1E-14 96.7 21.3 224 62-289 113-364 (378)
85 1qqe_A Vesicular transport pro 99.3 1.9E-10 6.6E-15 94.2 17.7 167 93-289 44-227 (292)
86 3qky_A Outer membrane assembly 99.3 1.3E-09 4.3E-14 87.8 20.6 190 120-331 14-228 (261)
87 3mv2_B Coatomer subunit epsilo 99.3 2.4E-09 8.2E-14 86.4 21.3 144 105-253 85-238 (310)
88 1qqe_A Vesicular transport pro 99.2 5E-10 1.7E-14 91.7 17.3 97 48-148 39-145 (292)
89 3qky_A Outer membrane assembly 99.2 1.5E-09 5.2E-14 87.3 19.5 188 83-290 12-224 (261)
90 2fo7_A Synthetic consensus TPR 99.2 1.1E-09 3.7E-14 78.0 16.5 60 263-323 71-130 (136)
91 2fo7_A Synthetic consensus TPR 99.2 1E-09 3.5E-14 78.2 16.3 132 157-291 2-133 (136)
92 3urz_A Uncharacterized protein 99.2 1.2E-09 4.2E-14 84.6 17.9 94 123-219 6-116 (208)
93 3mv2_B Coatomer subunit epsilo 99.2 1.8E-09 6E-14 87.2 18.8 243 64-333 27-288 (310)
94 4e6h_A MRNA 3'-END-processing 99.2 4.1E-08 1.4E-12 89.0 29.6 193 155-349 342-559 (679)
95 3urz_A Uncharacterized protein 99.2 2.1E-09 7.1E-14 83.3 17.8 162 88-254 6-185 (208)
96 3dra_A Protein farnesyltransfe 99.2 1.1E-07 3.7E-12 77.5 28.5 220 101-325 48-287 (306)
97 4e6h_A MRNA 3'-END-processing 99.2 1.2E-07 4.2E-12 85.8 30.8 250 87-342 303-585 (679)
98 4ga2_A E3 SUMO-protein ligase 99.2 3E-10 1E-14 83.0 10.9 145 162-310 3-148 (150)
99 2pzi_A Probable serine/threoni 99.2 3.1E-09 1.1E-13 97.4 19.5 173 132-311 402-583 (681)
100 2pzi_A Probable serine/threoni 99.1 8.3E-10 2.9E-14 101.2 15.5 185 97-287 402-602 (681)
101 3rjv_A Putative SEL1 repeat pr 99.1 1.1E-08 3.6E-13 79.5 19.4 176 68-256 4-198 (212)
102 3rjv_A Putative SEL1 repeat pr 99.1 1.5E-08 5.2E-13 78.6 20.3 176 104-291 4-198 (212)
103 2yhc_A BAMD, UPF0169 lipoprote 99.1 1E-08 3.5E-13 80.4 18.6 189 120-326 3-214 (225)
104 3qou_A Protein YBBN; thioredox 99.1 4.6E-09 1.6E-13 85.7 16.9 164 155-322 116-281 (287)
105 2r5s_A Uncharacterized protein 99.1 2E-09 6.9E-14 81.0 13.6 157 126-286 11-169 (176)
106 2yhc_A BAMD, UPF0169 lipoprote 99.1 3.6E-08 1.2E-12 77.3 20.5 186 87-291 5-214 (225)
107 2vsy_A XCC0866; transferase, g 99.1 7.3E-09 2.5E-13 93.2 18.7 154 134-291 2-158 (568)
108 3dra_A Protein farnesyltransfe 99.1 1.1E-07 3.7E-12 77.5 23.6 217 67-289 50-286 (306)
109 2r5s_A Uncharacterized protein 99.1 2E-09 7E-14 80.9 12.6 163 158-324 8-172 (176)
110 3qou_A Protein YBBN; thioredox 99.1 5.2E-09 1.8E-13 85.4 15.5 167 118-288 114-282 (287)
111 4ga2_A E3 SUMO-protein ligase 99.1 8E-10 2.7E-14 80.7 9.1 108 99-209 10-117 (150)
112 2vsy_A XCC0866; transferase, g 99.1 6E-09 2.1E-13 93.8 16.7 163 99-266 2-167 (568)
113 2ifu_A Gamma-SNAP; membrane fu 99.0 6.3E-08 2.2E-12 79.8 20.2 90 93-183 43-142 (307)
114 3q7a_A Farnesyltransferase alp 99.0 1.7E-06 6E-11 71.2 28.0 223 98-325 66-331 (349)
115 1hh8_A P67PHOX, NCF-2, neutrop 99.0 9E-08 3.1E-12 74.2 19.3 127 158-290 8-150 (213)
116 2ifu_A Gamma-SNAP; membrane fu 99.0 7.2E-09 2.5E-13 85.5 13.6 224 63-318 4-254 (307)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.9 7.6E-08 2.6E-12 74.6 17.2 130 123-257 8-152 (213)
118 1a17_A Serine/threonine protei 98.9 1.2E-07 4.1E-12 70.1 17.1 130 192-324 14-145 (166)
119 4gco_A Protein STI-1; structur 98.9 6E-08 2E-12 68.3 13.9 95 228-324 15-109 (126)
120 2uy1_A Cleavage stimulation fa 98.9 1.6E-05 5.4E-10 69.9 31.9 150 193-350 288-455 (493)
121 3u3w_A Transcriptional activat 98.9 3.8E-07 1.3E-11 74.6 20.4 211 33-254 33-265 (293)
122 3u3w_A Transcriptional activat 98.9 4.7E-07 1.6E-11 74.0 20.8 201 80-289 40-265 (293)
123 3gyz_A Chaperone protein IPGC; 98.9 3.9E-08 1.3E-12 71.4 12.6 98 191-290 36-133 (151)
124 4gco_A Protein STI-1; structur 98.9 1.3E-07 4.5E-12 66.5 14.0 60 228-288 49-108 (126)
125 1a17_A Serine/threonine protei 98.9 1.6E-07 5.5E-12 69.4 15.3 127 158-287 15-143 (166)
126 2uy1_A Cleavage stimulation fa 98.8 5.1E-06 1.7E-10 73.0 26.8 295 7-322 11-380 (493)
127 2c2l_A CHIP, carboxy terminus 98.8 5.2E-08 1.8E-12 79.1 13.0 98 85-184 3-100 (281)
128 2e2e_A Formate-dependent nitri 98.8 7.3E-08 2.5E-12 72.3 12.9 121 167-290 21-144 (177)
129 1na0_A Designed protein CTPR3; 98.8 2.9E-07 1E-11 64.2 15.3 96 193-290 11-106 (125)
130 3gw4_A Uncharacterized protein 98.8 7.3E-08 2.5E-12 74.0 12.9 155 169-324 5-175 (203)
131 2c2l_A CHIP, carboxy terminus 98.8 5.2E-08 1.8E-12 79.2 12.5 194 120-325 3-199 (281)
132 2qfc_A PLCR protein; TPR, HTH, 98.8 1.2E-06 4.2E-11 71.5 20.8 163 161-323 80-264 (293)
133 2qfc_A PLCR protein; TPR, HTH, 98.8 1.5E-06 5.1E-11 71.0 21.2 163 126-288 80-264 (293)
134 2e2e_A Formate-dependent nitri 98.8 6.9E-08 2.4E-12 72.5 12.2 118 204-324 23-143 (177)
135 2vgx_A Chaperone SYCD; alterna 98.8 3.6E-08 1.2E-12 71.6 10.2 95 228-324 23-117 (148)
136 1na0_A Designed protein CTPR3; 98.8 2.7E-07 9.4E-12 64.3 14.6 112 157-271 10-121 (125)
137 2lni_A Stress-induced-phosphop 98.8 2.2E-07 7.5E-12 65.8 14.0 115 191-308 16-130 (133)
138 2vyi_A SGTA protein; chaperone 98.8 2.9E-07 9.9E-12 64.8 14.4 61 228-289 48-108 (131)
139 3q7a_A Farnesyltransferase alp 98.8 3.3E-06 1.1E-10 69.6 21.9 218 67-290 71-331 (349)
140 3gyz_A Chaperone protein IPGC; 98.8 1.1E-07 3.8E-12 69.0 11.8 106 223-332 32-138 (151)
141 2vyi_A SGTA protein; chaperone 98.8 2.6E-07 8.9E-12 65.1 13.5 120 155-277 11-130 (131)
142 2lni_A Stress-induced-phosphop 98.8 2.7E-07 9.2E-12 65.3 13.6 98 156-255 16-113 (133)
143 1p5q_A FKBP52, FK506-binding p 98.8 4.7E-07 1.6E-11 75.5 17.0 130 192-323 148-292 (336)
144 3gw4_A Uncharacterized protein 98.7 1.3E-07 4.4E-12 72.6 12.1 154 134-288 5-174 (203)
145 1p5q_A FKBP52, FK506-binding p 98.7 3.1E-07 1E-11 76.7 14.8 130 156-287 147-291 (336)
146 2vgx_A Chaperone SYCD; alterna 98.7 1.1E-07 3.7E-12 69.0 10.1 99 190-290 20-118 (148)
147 3upv_A Heat shock protein STI1 98.7 6.4E-07 2.2E-11 62.9 13.4 95 228-324 6-100 (126)
148 2xcb_A PCRH, regulatory protei 98.7 1.7E-07 5.9E-12 67.5 10.1 95 193-289 20-114 (142)
149 4f3v_A ESX-1 secretion system 98.7 2E-06 6.8E-11 68.6 16.6 125 162-289 108-236 (282)
150 4f3v_A ESX-1 secretion system 98.7 1.3E-06 4.4E-11 69.7 15.4 192 133-330 18-240 (282)
151 1elw_A TPR1-domain of HOP; HOP 98.6 2.2E-06 7.6E-11 58.9 14.7 93 195-289 8-100 (118)
152 3upv_A Heat shock protein STI1 98.6 1.2E-06 4.2E-11 61.4 13.3 96 193-290 6-101 (126)
153 1elw_A TPR1-domain of HOP; HOP 98.6 2.7E-06 9.1E-11 58.5 14.6 96 158-255 6-101 (118)
154 2fbn_A 70 kDa peptidylprolyl i 98.6 1.6E-06 5.6E-11 66.2 14.5 97 227-325 89-186 (198)
155 4gcn_A Protein STI-1; structur 98.6 1.1E-06 3.6E-11 61.9 12.4 95 229-324 11-111 (127)
156 2xcb_A PCRH, regulatory protei 98.6 1.2E-06 3.9E-11 63.1 12.1 95 228-324 20-114 (142)
157 3dss_A Geranylgeranyl transfer 98.6 0.00014 4.8E-09 59.7 25.3 187 137-332 90-309 (331)
158 2fbn_A 70 kDa peptidylprolyl i 98.6 1.8E-06 6.1E-11 66.0 13.5 88 192-281 89-176 (198)
159 3q49_B STIP1 homology and U bo 98.6 8E-06 2.7E-10 58.0 16.2 98 190-289 8-105 (137)
160 3dss_A Geranylgeranyl transfer 98.6 0.0002 6.7E-09 58.8 26.4 185 102-291 90-305 (331)
161 4gcn_A Protein STI-1; structur 98.6 1.8E-06 6.1E-11 60.7 12.4 95 194-289 11-111 (127)
162 3sz7_A HSC70 cochaperone (SGT) 98.5 2.3E-06 7.7E-11 63.2 13.4 100 190-291 10-109 (164)
163 2kck_A TPR repeat; tetratricop 98.5 1.8E-06 6.3E-11 58.7 11.9 91 162-254 12-105 (112)
164 3q49_B STIP1 homology and U bo 98.5 2.9E-06 9.9E-11 60.3 13.4 101 223-325 6-106 (137)
165 1elr_A TPR2A-domain of HOP; HO 98.5 1.6E-06 5.5E-11 60.9 11.9 95 194-289 7-107 (131)
166 2dba_A Smooth muscle cell asso 98.5 7E-06 2.4E-10 59.1 15.3 97 226-324 28-127 (148)
167 3sz7_A HSC70 cochaperone (SGT) 98.5 5.7E-06 2E-10 61.0 15.0 98 156-255 11-108 (164)
168 2kck_A TPR repeat; tetratricop 98.5 3.1E-06 1E-10 57.6 12.6 99 85-185 5-106 (112)
169 2dba_A Smooth muscle cell asso 98.5 5.8E-06 2E-10 59.5 14.6 21 162-182 34-54 (148)
170 4b4t_Q 26S proteasome regulato 98.5 7.4E-06 2.5E-10 70.9 17.7 164 124-287 58-242 (434)
171 1hxi_A PEX5, peroxisome target 98.5 2.6E-06 8.9E-11 59.3 12.1 93 230-324 21-113 (121)
172 4b4t_Q 26S proteasome regulato 98.5 1.3E-05 4.3E-10 69.4 18.4 167 158-324 57-244 (434)
173 1elr_A TPR2A-domain of HOP; HO 98.4 4.1E-06 1.4E-10 58.8 11.9 98 87-185 5-108 (131)
174 1hxi_A PEX5, peroxisome target 98.4 3E-06 1E-10 58.9 10.5 92 196-289 22-113 (121)
175 1wao_1 Serine/threonine protei 98.4 4.4E-06 1.5E-10 73.1 13.2 117 166-285 16-134 (477)
176 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 1.4E-05 4.8E-10 69.6 15.4 132 191-324 268-414 (457)
177 1ihg_A Cyclophilin 40; ppiase 98.3 1.3E-05 4.3E-10 67.7 14.5 123 193-317 225-362 (370)
178 2xev_A YBGF; tetratricopeptide 98.3 2.2E-05 7.4E-10 55.0 13.5 90 198-289 9-104 (129)
179 1wao_1 Serine/threonine protei 98.3 2.1E-06 7.2E-11 75.2 9.8 120 198-320 13-134 (477)
180 3k9i_A BH0479 protein; putativ 98.3 1.8E-06 6.2E-11 59.6 7.6 84 240-324 4-89 (117)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 8.5E-06 2.9E-10 71.0 13.2 131 156-288 268-413 (457)
182 3rkv_A Putative peptidylprolyl 98.3 1E-05 3.6E-10 59.4 11.9 99 191-290 11-126 (162)
183 3ro3_A PINS homolog, G-protein 98.3 5E-06 1.7E-10 60.8 10.1 131 194-324 12-157 (164)
184 3ro3_A PINS homolog, G-protein 98.3 7.9E-06 2.7E-10 59.7 11.0 97 87-183 10-116 (164)
185 2xev_A YBGF; tetratricopeptide 98.3 4.1E-05 1.4E-09 53.5 14.2 92 127-219 8-104 (129)
186 1ihg_A Cyclophilin 40; ppiase 98.2 1.5E-05 5.2E-10 67.2 12.7 123 158-282 225-362 (370)
187 3rkv_A Putative peptidylprolyl 98.2 1.8E-05 6E-10 58.2 11.7 101 155-256 10-127 (162)
188 3k9i_A BH0479 protein; putativ 98.2 3.3E-06 1.1E-10 58.3 7.2 59 194-253 30-88 (117)
189 1klx_A Cysteine rich protein B 98.2 0.00013 4.4E-09 51.9 15.4 112 205-327 9-128 (138)
190 2if4_A ATFKBP42; FKBP-like, al 98.2 6.7E-06 2.3E-10 68.6 9.7 149 156-325 179-328 (338)
191 2if4_A ATFKBP42; FKBP-like, al 98.2 9.7E-06 3.3E-10 67.6 9.6 125 192-338 180-304 (338)
192 1dce_A Protein (RAB geranylger 98.2 0.00083 2.8E-08 60.0 22.5 166 171-342 44-236 (567)
193 1dce_A Protein (RAB geranylger 98.1 0.00029 9.8E-09 63.0 19.3 173 102-279 45-244 (567)
194 2hr2_A Hypothetical protein; a 98.1 0.00011 3.9E-09 52.8 13.0 62 263-324 59-130 (159)
195 1zu2_A Mitochondrial import re 98.1 2.3E-05 7.9E-10 56.3 8.9 85 203-289 14-119 (158)
196 2hr2_A Hypothetical protein; a 98.0 8.8E-05 3E-09 53.4 11.4 61 228-289 59-130 (159)
197 3n71_A Histone lysine methyltr 98.0 4.4E-05 1.5E-09 66.6 11.7 126 200-325 318-464 (490)
198 2kat_A Uncharacterized protein 98.0 6.7E-05 2.3E-09 51.3 10.3 78 210-289 4-81 (115)
199 1klx_A Cysteine rich protein B 98.0 0.00035 1.2E-08 49.6 13.9 111 64-186 9-127 (138)
200 3n71_A Histone lysine methyltr 98.0 3.6E-05 1.2E-09 67.2 9.6 125 165-289 318-463 (490)
201 2l6j_A TPR repeat-containing p 98.0 1.3E-05 4.5E-10 54.4 5.6 57 197-254 10-66 (111)
202 2l6j_A TPR repeat-containing p 97.9 8.5E-05 2.9E-09 50.2 8.8 65 225-290 3-67 (111)
203 1na3_A Designed protein CTPR2; 97.9 0.00024 8.1E-09 45.9 10.4 79 227-307 10-88 (91)
204 1zu2_A Mitochondrial import re 97.9 5.3E-05 1.8E-09 54.4 7.5 102 238-343 14-136 (158)
205 2kat_A Uncharacterized protein 97.9 0.00028 9.5E-09 48.2 11.0 80 244-325 3-82 (115)
206 1na3_A Designed protein CTPR2; 97.8 0.00034 1.2E-08 45.2 10.1 77 193-271 11-87 (91)
207 3ma5_A Tetratricopeptide repea 97.6 0.00027 9.3E-09 46.9 7.9 62 226-288 7-68 (100)
208 3ma5_A Tetratricopeptide repea 97.6 0.00049 1.7E-08 45.6 8.7 84 260-344 6-90 (100)
209 3ly7_A Transcriptional activat 97.5 0.0032 1.1E-07 52.0 13.6 74 118-195 274-347 (372)
210 3ly7_A Transcriptional activat 97.5 0.0075 2.6E-07 49.9 15.6 76 153-232 274-349 (372)
211 2kc7_A BFR218_protein; tetratr 97.1 0.0024 8.2E-08 41.9 7.7 55 235-290 9-64 (99)
212 3mkq_A Coatomer beta'-subunit; 97.0 0.044 1.5E-06 51.3 18.3 154 95-287 608-762 (814)
213 2kc7_A BFR218_protein; tetratr 97.0 0.0026 8.8E-08 41.7 7.2 57 199-256 8-65 (99)
214 3qwp_A SET and MYND domain-con 97.0 0.005 1.7E-07 52.9 10.4 25 298-322 373-397 (429)
215 3qww_A SET and MYND domain-con 97.0 0.0022 7.5E-08 55.0 7.8 83 205-287 312-408 (433)
216 3bee_A Putative YFRE protein; 96.9 0.011 3.7E-07 38.3 9.1 65 225-290 5-72 (93)
217 1pc2_A Mitochondria fission pr 96.9 0.009 3.1E-07 42.4 9.1 81 207-289 14-99 (152)
218 3qww_A SET and MYND domain-con 96.9 0.0028 9.5E-08 54.4 7.6 87 168-254 310-410 (433)
219 3qwp_A SET and MYND domain-con 96.8 0.0078 2.7E-07 51.6 10.3 92 128-219 294-399 (429)
220 3bee_A Putative YFRE protein; 96.8 0.034 1.1E-06 36.0 10.8 67 259-326 4-73 (93)
221 2v5f_A Prolyl 4-hydroxylase su 96.6 0.03 1E-06 37.1 9.8 66 225-290 4-75 (104)
222 3mkq_B Coatomer subunit alpha; 96.6 0.089 3E-06 38.4 12.7 26 191-216 34-59 (177)
223 3mkq_A Coatomer beta'-subunit; 96.6 0.08 2.7E-06 49.6 15.9 104 89-219 632-735 (814)
224 1pc2_A Mitochondria fission pr 96.5 0.033 1.1E-06 39.5 9.6 88 241-332 13-105 (152)
225 2v5f_A Prolyl 4-hydroxylase su 96.4 0.046 1.6E-06 36.2 9.8 66 191-256 5-76 (104)
226 3u64_A Protein TP_0956; tetrat 96.3 0.079 2.7E-06 42.1 11.8 95 64-161 177-282 (301)
227 1wy6_A Hypothetical protein ST 96.2 0.16 5.5E-06 35.0 16.2 140 96-257 17-156 (172)
228 3mkq_B Coatomer subunit alpha; 96.0 0.27 9.4E-06 35.8 13.6 101 200-321 14-114 (177)
229 4h7y_A Dual specificity protei 96.0 0.064 2.2E-06 37.7 8.6 66 275-342 74-139 (161)
230 1wy6_A Hypothetical protein ST 96.0 0.23 7.8E-06 34.2 14.2 85 238-328 73-157 (172)
231 4h7y_A Dual specificity protei 95.8 0.17 5.8E-06 35.6 10.0 102 83-186 10-124 (161)
232 1nzn_A CGI-135 protein, fissio 95.7 0.15 5.2E-06 34.8 9.4 84 206-290 16-103 (126)
233 3u64_A Protein TP_0956; tetrat 95.6 0.64 2.2E-05 37.0 18.9 92 172-265 179-281 (301)
234 1nzn_A CGI-135 protein, fissio 95.5 0.11 3.6E-06 35.5 8.2 66 119-184 33-102 (126)
235 4gns_B Protein CSD3, chitin bi 94.6 0.32 1.1E-05 44.7 11.1 53 234-287 345-397 (754)
236 1v54_E Cytochrome C oxidase po 94.4 0.6 2E-05 30.2 9.6 65 276-341 25-89 (109)
237 4gns_B Protein CSD3, chitin bi 94.3 0.3 1E-05 44.8 10.3 125 90-217 252-397 (754)
238 2ff4_A Probable regulatory pro 94.3 0.22 7.5E-06 42.1 8.9 55 267-322 177-231 (388)
239 4ady_A RPN2, 26S proteasome re 94.2 3.8 0.00013 38.7 21.0 216 129-353 498-728 (963)
240 4ady_A RPN2, 26S proteasome re 93.7 4.8 0.00016 38.1 21.3 261 92-360 417-692 (963)
241 2y69_E Cytochrome C oxidase su 93.7 1.1 3.8E-05 30.7 9.6 64 277-341 69-132 (152)
242 4b4t_P 26S proteasome regulato 93.3 3.6 0.00012 35.4 19.0 188 100-288 30-245 (445)
243 4fhn_B Nucleoporin NUP120; pro 92.9 3.3 0.00011 40.6 15.4 61 89-149 902-966 (1139)
244 2ff4_A Probable regulatory pro 92.6 0.7 2.4E-05 39.0 9.3 55 197-252 177-231 (388)
245 4fhn_B Nucleoporin NUP120; pro 92.6 5 0.00017 39.4 16.2 211 126-344 817-1079(1139)
246 1v54_E Cytochrome C oxidase po 92.1 1.6 5.4E-05 28.3 9.1 48 242-289 26-73 (109)
247 3eiq_C Programmed cell death p 91.0 4.8 0.00016 33.3 12.1 25 89-113 57-81 (358)
248 4b4t_P 26S proteasome regulato 90.7 7.5 0.00026 33.4 21.0 187 66-254 32-246 (445)
249 2y69_E Cytochrome C oxidase su 90.6 3 0.0001 28.7 9.1 62 241-303 68-129 (152)
250 3o48_A Mitochondria fission 1 89.6 3.7 0.00013 28.2 9.5 24 126-149 83-106 (134)
251 3o48_A Mitochondria fission 1 86.8 5.8 0.0002 27.2 11.0 49 242-290 59-107 (134)
252 1zbp_A Hypothetical protein VP 86.3 7 0.00024 30.7 9.4 116 199-325 5-129 (273)
253 3lvg_A Clathrin heavy chain 1; 85.9 0.0062 2.1E-07 51.9 -8.1 216 85-316 82-324 (624)
254 3lvg_A Clathrin heavy chain 1; 85.7 0.00013 4.5E-09 61.8 -18.1 200 85-305 53-272 (624)
255 1y8m_A FIS1; mitochondria, unk 85.3 7.5 0.00026 27.1 11.6 67 84-150 37-106 (144)
256 2zu6_B Programmed cell death p 84.6 6.1 0.00021 31.9 8.8 25 89-113 6-30 (307)
257 4b4t_R RPN7, 26S proteasome re 83.6 11 0.00039 32.1 10.6 97 158-254 133-236 (429)
258 4b4t_R RPN7, 26S proteasome re 83.5 13 0.00043 31.8 10.9 119 102-220 110-237 (429)
259 2nsz_A Programmed cell death p 82.5 4.1 0.00014 28.0 6.1 65 228-293 9-75 (129)
260 1zbp_A Hypothetical protein VP 82.0 6.9 0.00024 30.7 7.7 113 164-289 5-128 (273)
261 3ffl_A Anaphase-promoting comp 81.7 4.9 0.00017 28.9 6.3 23 195-217 67-89 (167)
262 1y8m_A FIS1; mitochondria, unk 81.3 11 0.00039 26.2 12.7 49 242-290 58-106 (144)
263 2uwj_G Type III export protein 81.0 8.9 0.0003 24.7 8.3 50 166-221 49-98 (115)
264 2p58_C Putative type III secre 80.3 9.5 0.00032 24.6 9.2 50 166-221 50-99 (116)
265 2ion_A PDCD4, programmed cell 80.3 5.2 0.00018 28.4 6.1 67 228-295 11-79 (152)
266 3ffl_A Anaphase-promoting comp 76.9 18 0.00062 26.0 10.0 119 88-219 22-150 (167)
267 3esl_A Checkpoint serine/threo 75.3 23 0.00078 26.4 9.4 23 267-289 121-143 (202)
268 3lpz_A GET4 (YOR164C homolog); 69.4 45 0.0015 27.2 17.9 18 306-323 197-214 (336)
269 3eiq_C Programmed cell death p 67.7 51 0.0018 27.2 14.2 75 229-304 220-296 (358)
270 2zu6_B Programmed cell death p 65.4 52 0.0018 26.5 10.6 58 49-113 6-65 (307)
271 4a1g_A Mitotic checkpoint seri 64.8 34 0.0012 24.1 9.4 50 175-224 84-134 (152)
272 1wdy_A 2-5A-dependent ribonucl 62.8 19 0.00065 28.0 6.5 25 16-44 7-31 (285)
273 1k1a_A B-cell lymphoma 3-encod 61.8 36 0.0012 25.7 7.8 46 93-138 13-60 (241)
274 2d2s_A Exocyst complex compone 61.5 53 0.0018 25.2 9.0 88 92-182 24-117 (235)
275 2uwj_G Type III export protein 61.4 30 0.001 22.4 7.2 9 238-246 51-59 (115)
276 2wpv_A GET4, UPF0363 protein Y 60.8 65 0.0022 26.0 20.1 19 305-323 197-215 (312)
277 2p58_C Putative type III secre 60.3 32 0.0011 22.3 8.6 50 271-326 50-99 (116)
278 1wdy_A 2-5A-dependent ribonucl 59.9 13 0.00045 29.0 5.1 19 274-292 192-210 (285)
279 3eyy_A Putative iron uptake re 58.8 43 0.0015 23.3 7.0 58 251-310 9-66 (145)
280 3txn_A 26S proteasome regulato 58.7 82 0.0028 26.5 25.5 237 12-252 20-281 (394)
281 3esl_A Checkpoint serine/threo 58.4 55 0.0019 24.4 13.4 77 80-156 71-150 (202)
282 2fe3_A Peroxide operon regulat 58.3 44 0.0015 23.2 7.8 59 251-310 12-70 (145)
283 2ion_A PDCD4, programmed cell 58.1 46 0.0016 23.5 8.8 65 193-258 11-77 (152)
284 2xig_A Ferric uptake regulatio 56.6 48 0.0016 23.2 7.8 60 146-206 17-76 (150)
285 2xig_A Ferric uptake regulatio 56.4 49 0.0017 23.2 8.0 58 252-310 18-75 (150)
286 1mzb_A Ferric uptake regulatio 55.5 47 0.0016 22.7 7.1 44 267-310 23-67 (136)
287 2keb_A DNA polymerase subunit 55.4 38 0.0013 21.7 7.1 63 29-93 27-89 (101)
288 2d2s_A Exocyst complex compone 54.0 72 0.0025 24.5 11.9 90 17-114 24-119 (235)
289 1mzb_A Ferric uptake regulatio 52.5 53 0.0018 22.5 6.6 59 147-206 9-68 (136)
290 2w57_A Ferric uptake regulatio 52.2 58 0.002 22.8 7.0 61 146-207 7-68 (150)
291 2w57_A Ferric uptake regulatio 51.5 52 0.0018 23.0 6.4 37 241-277 32-68 (150)
292 2nsz_A Programmed cell death p 51.3 54 0.0019 22.3 10.1 65 193-258 9-75 (129)
293 3lpz_A GET4 (YOR164C homolog); 50.8 1E+02 0.0035 25.2 21.8 52 155-210 135-186 (336)
294 2fe3_A Peroxide operon regulat 50.8 59 0.002 22.5 7.5 60 146-206 12-71 (145)
295 3eyy_A Putative iron uptake re 49.5 46 0.0016 23.1 5.8 58 146-205 9-66 (145)
296 2wvi_A Mitotic checkpoint seri 49.2 70 0.0024 22.9 9.2 51 245-295 79-130 (164)
297 3kea_A K1L; tropism, ANK repea 48.8 30 0.001 27.3 5.4 15 93-107 35-49 (285)
298 4ets_A Ferric uptake regulatio 47.0 72 0.0025 22.7 6.6 57 253-310 25-83 (162)
299 4a1g_A Mitotic checkpoint seri 46.8 74 0.0025 22.4 9.9 50 105-154 84-134 (152)
300 4ets_A Ferric uptake regulatio 45.5 72 0.0025 22.7 6.4 60 147-207 24-85 (162)
301 3hra_A Ankyrin repeat family p 44.4 25 0.00087 25.6 4.2 14 96-109 12-25 (201)
302 3txn_A 26S proteasome regulato 44.2 1.4E+02 0.0049 25.0 21.4 231 62-297 31-290 (394)
303 2fu4_A Ferric uptake regulatio 44.2 51 0.0018 19.9 7.0 11 280-290 36-46 (83)
304 2f6m_A Suppressor protein STP2 44.0 47 0.0016 19.4 5.3 50 263-313 4-53 (65)
305 1k1a_A B-cell lymphoma 3-encod 43.7 65 0.0022 24.1 6.6 187 127-331 12-211 (241)
306 4b4t_S RPN3, 26S proteasome re 43.7 1.7E+02 0.0057 25.7 9.4 26 12-37 232-257 (523)
307 3t8k_A Uncharacterized protein 42.2 95 0.0033 22.4 7.2 28 128-155 42-69 (186)
308 3l6a_A Eukaryotic translation 41.8 1.5E+02 0.0051 24.6 10.8 68 88-159 14-86 (364)
309 2o03_A Probable zinc uptake re 41.7 57 0.0019 22.1 5.2 44 267-310 16-59 (131)
310 3t8k_A Uncharacterized protein 41.7 77 0.0026 23.0 6.4 66 91-156 40-109 (186)
311 4g8k_A 2-5A-dependent ribonucl 41.6 38 0.0013 27.4 5.1 106 210-331 218-329 (337)
312 2rg8_A Programmed cell death p 40.7 90 0.0031 22.3 6.3 60 228-289 12-73 (165)
313 3ltm_A Alpha-REP4; protein eng 40.2 1.1E+02 0.0037 22.4 19.0 19 154-172 93-111 (211)
314 1ug3_A EIF4GI, eukaryotic prot 39.9 58 0.002 26.6 5.9 26 228-253 13-38 (339)
315 2ijq_A Hypothetical protein; s 39.1 1E+02 0.0035 22.0 7.9 49 240-288 46-102 (161)
316 3mwm_A ZUR, putative metal upt 39.0 51 0.0017 22.7 4.7 43 234-276 21-63 (139)
317 2r9g_A AAA ATPase, central reg 38.8 1.2E+02 0.0041 22.6 10.4 34 204-238 27-60 (204)
318 2b7e_A PRE-mRNA processing pro 38.7 42 0.0014 19.2 3.3 29 103-131 3-31 (59)
319 3mwm_A ZUR, putative metal upt 38.4 60 0.002 22.3 5.0 47 160-206 17-63 (139)
320 2ijq_A Hypothetical protein; s 37.5 1.1E+02 0.0038 21.8 8.0 49 170-218 46-102 (161)
321 3ltm_A Alpha-REP4; protein eng 37.4 1.2E+02 0.0041 22.2 19.6 142 189-346 62-203 (211)
322 2keb_A DNA polymerase subunit 36.7 83 0.0028 20.1 5.8 31 280-310 28-58 (101)
323 3kea_A K1L; tropism, ANK repea 36.3 62 0.0021 25.4 5.5 26 91-120 64-89 (285)
324 3kae_A CDC27, possible protein 36.0 1.2E+02 0.0042 22.0 7.3 26 297-322 115-140 (242)
325 2wvi_A Mitotic checkpoint seri 35.9 1.2E+02 0.0041 21.7 10.5 72 82-156 59-131 (164)
326 1qsa_A Protein (soluble lytic 35.8 2.5E+02 0.0085 25.4 29.7 117 205-324 228-347 (618)
327 3bge_A Predicted ATPase; struc 35.8 1.3E+02 0.0046 22.3 9.1 20 205-224 21-40 (201)
328 3mab_A Uncharacterized protein 34.5 43 0.0015 21.2 3.3 29 315-343 36-64 (93)
329 2o03_A Probable zinc uptake re 34.4 66 0.0022 21.8 4.6 33 172-204 26-58 (131)
330 3b7b_A Euchromatic histone-lys 34.2 45 0.0015 25.0 4.2 21 304-324 215-235 (237)
331 3f3f_C Nucleoporin NUP85; stru 34.1 1.5E+02 0.005 26.4 7.5 51 295-347 515-565 (570)
332 3jxi_A Vanilloid receptor-rela 34.0 16 0.00055 28.2 1.6 55 93-147 9-72 (260)
333 3pvs_A Replication-associated 33.8 2.2E+02 0.0077 24.3 15.0 54 168-221 267-325 (447)
334 1wty_A Hypothetical protein TT 33.7 85 0.0029 20.8 5.0 67 26-102 3-69 (119)
335 2p22_A Suppressor protein STP2 33.4 1E+02 0.0034 22.4 5.4 55 260-315 110-164 (174)
336 1oai_A Nuclear RNA export fact 33.2 44 0.0015 19.0 2.9 21 100-120 34-55 (59)
337 2r9g_A AAA ATPase, central reg 31.7 1.6E+02 0.0054 21.9 11.0 34 134-168 27-60 (204)
338 2yru_A Steroid receptor RNA ac 31.1 1.2E+02 0.0041 20.3 7.4 43 72-115 48-90 (118)
339 3hra_A Ankyrin repeat family p 31.0 35 0.0012 24.8 3.0 16 130-145 11-26 (201)
340 3ctd_A Putative ATPase, AAA fa 30.6 1.7E+02 0.0059 21.9 10.1 32 205-236 49-80 (213)
341 3kae_A CDC27, possible protein 30.1 1.6E+02 0.0055 21.4 6.9 29 192-220 115-143 (242)
342 2ko4_A Mediator of RNA polymer 30.1 49 0.0017 20.1 2.8 36 2-37 27-62 (81)
343 3eu9_A Huntingtin-interacting 30.1 28 0.00095 26.2 2.4 14 307-320 218-231 (240)
344 3ljn_A Hypothetical protein; a 29.6 57 0.002 26.6 4.4 95 84-187 16-112 (364)
345 3bge_A Predicted ATPase; struc 29.2 1.8E+02 0.006 21.6 9.6 33 134-166 20-52 (201)
346 1bpo_A Protein (clathrin); cla 29.2 2.8E+02 0.0096 24.0 9.6 142 169-323 342-483 (494)
347 4aez_C MAD3, mitotic spindle c 29.1 1.9E+02 0.0065 22.0 8.2 51 244-294 132-183 (223)
348 3qil_A Clathrin heavy chain 1; 28.6 1.1E+02 0.0039 20.5 4.6 52 229-283 35-86 (125)
349 4aez_C MAD3, mitotic spindle c 28.3 2E+02 0.0067 21.9 8.5 56 277-332 130-186 (223)
350 1ug3_A EIF4GI, eukaryotic prot 28.0 2.4E+02 0.0084 22.9 9.8 25 89-113 14-38 (339)
351 3jxi_A Vanilloid receptor-rela 27.9 43 0.0015 25.7 3.1 31 17-47 8-38 (260)
352 2rfa_A Transient receptor pote 27.9 1.8E+02 0.0061 21.5 6.7 19 17-35 6-24 (232)
353 2qfz_A TBC1 domain family memb 27.2 2.5E+02 0.0086 22.8 9.0 76 212-287 230-312 (345)
354 2wpv_A GET4, UPF0363 protein Y 26.7 2.5E+02 0.0086 22.6 21.3 26 155-180 133-158 (312)
355 2cos_A Serine/threonine protei 26.4 61 0.0021 18.0 2.5 19 304-322 28-48 (54)
356 4gq2_M Nucleoporin NUP120; bet 26.1 4.5E+02 0.015 25.3 11.4 29 297-325 898-926 (950)
357 3lxu_X Tripeptidyl-peptidase 2 26.0 2.7E+02 0.0094 27.9 8.5 78 242-322 1265-1342(1354)
358 2crb_A Nuclear receptor bindin 25.2 1.3E+02 0.0046 19.0 4.4 23 299-321 18-40 (97)
359 4fke_A Aminopeptidase N; zinc 25.2 4.5E+02 0.016 25.1 18.0 48 132-182 737-784 (909)
360 3aji_A 26S proteasome non-ATPa 25.0 1.9E+02 0.0065 21.3 6.3 19 18-36 10-28 (231)
361 4gq2_M Nucleoporin NUP120; bet 24.8 4.7E+02 0.016 25.1 11.5 48 228-275 899-950 (950)
362 2qq8_A TBC1 domain family memb 24.8 1.1E+02 0.0037 25.0 5.0 45 212-256 214-258 (334)
363 3bqo_A Telomeric repeat-bindin 24.3 2.2E+02 0.0076 21.2 8.4 45 66-113 94-144 (211)
364 3ctd_A Putative ATPase, AAA fa 23.6 2.4E+02 0.0081 21.2 10.8 46 124-169 35-83 (213)
365 4b4t_S RPN3, 26S proteasome re 23.1 3.9E+02 0.013 23.5 12.5 65 191-255 231-299 (523)
366 3rjo_A Endoplasmic reticulum a 23.1 3.4E+02 0.012 22.8 19.8 170 10-189 196-373 (419)
367 2rg8_A Programmed cell death p 23.0 1.7E+02 0.0057 20.9 5.1 23 90-112 14-36 (165)
368 1wgl_A TOLL-interacting protei 22.8 88 0.003 17.8 2.9 16 275-290 37-52 (59)
369 1zl8_A LIN-7; heterodimer, alp 22.5 71 0.0024 17.4 2.2 24 309-332 6-29 (53)
370 3eu9_A Huntingtin-interacting 21.6 70 0.0024 23.8 3.2 23 304-330 182-204 (240)
371 3ltj_A Alpharep-4; protein eng 21.4 2.3E+02 0.0079 20.3 20.5 138 190-343 58-195 (201)
372 3bqs_A Uncharacterized protein 20.8 1.4E+02 0.0047 18.9 3.8 23 315-337 36-58 (93)
373 3qil_A Clathrin heavy chain 1; 20.6 1.6E+02 0.0054 19.8 4.1 46 128-176 39-84 (125)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8.5e-35 Score=254.66 Aligned_cols=204 Identities=13% Similarity=0.126 Sum_probs=109.4
Q ss_pred HHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---------hhH
Q 017743 105 VNALFKELHESILAPDI-YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA---------FDK 174 (366)
Q Consensus 105 a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~ 174 (366)
+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 33444445444443332 34556666666666666666666666666666666666666666655443 345
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 017743 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (366)
|.++|++|...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 017743 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308 (366)
Q Consensus 255 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 308 (366)
.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555555555555555555555544
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.1e-34 Score=251.09 Aligned_cols=206 Identities=14% Similarity=0.146 Sum_probs=157.8
Q ss_pred HHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---------H
Q 017743 68 KALGYFQKMKGMERCKPNI-VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM---------I 137 (366)
Q Consensus 68 ~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~ 137 (366)
.+..+.+.+.+ .+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. +
T Consensus 8 ~~e~L~~~~~~-k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 8 PSENLSRKAKK-KAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred hHHHHHHHHHH-hcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 34445555554 4444433 35777888888888888888888888888888888888888888876554 5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHH
Q 017743 138 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217 (366)
Q Consensus 138 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 217 (366)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|+.++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 77888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 017743 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274 (366)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 274 (366)
.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.+..|+..||+.++..|+..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888888888888888888888877653
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-30 Score=235.85 Aligned_cols=333 Identities=11% Similarity=0.042 Sum_probs=286.6
Q ss_pred cccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHH----------------------------
Q 017743 6 WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAH---------------------------- 56 (366)
Q Consensus 6 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~---------------------------- 56 (366)
+..++..+|+.++..|.+.|++++|.++|++|.+.+ |+ ...+..+...+
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 445678999999999999999999999999998864 43 33333332111
Q ss_pred ------hhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 017743 57 ------LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130 (366)
Q Consensus 57 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 130 (366)
+....+.|++++|.++|+++.+. +++..+|+.++..|.+.|++++|.++|+++.+.+ +.+..++..++.+
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 348 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLAS 348 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHH
Confidence 11222567899999999999863 6899999999999999999999999999999876 4478899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHH
Q 017743 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210 (366)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 210 (366)
+.+.|++++|.++++++.+.. +.+..++..++..|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|
T Consensus 349 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 426 (597)
T 2xpi_A 349 LHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQA 426 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998653 457889999999999999999999999999875 334688999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+.+.+..+. +..+|+.++..|.+.|++++|.++|+++.+.
T Consensus 427 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 427 ISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999875 557889999999999999999999999999987654 7899999999999999999999999999876
Q ss_pred ----CCCCC--HHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcccccCC
Q 017743 291 ----GVTPD--SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQ 349 (366)
Q Consensus 291 ----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 349 (366)
+..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..++..+...+...|....
T Consensus 505 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH
Confidence 66787 7899999999999999999999999999865 3467889999999988877543
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.3e-30 Score=231.45 Aligned_cols=223 Identities=9% Similarity=-0.051 Sum_probs=153.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 017743 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200 (366)
Q Consensus 121 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 200 (366)
..+++.++.+|.+.|++++|.++|+++.+.+. .+..++..++.++.+.|++++|.++++++... .+.+..++..++..
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~ 382 (597)
T 2xpi_A 305 SDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIY 382 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHH
Confidence 33344444444444444444444444443321 13444444444444445555555555444433 23457777888888
Q ss_pred HHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 017743 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280 (366)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 280 (366)
|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+.+.+.++. +..+|..++.+|.+.|++++|
T Consensus 383 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 383 YLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888887653 445778888888888888888888888888876543 678888888888888888888
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC----CCCCC--hhHHHHHHHHhhcccccC
Q 017743 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN----GIVPN--KRFFLEALETFSSSLAGS 348 (366)
Q Consensus 281 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~~~--~~~~~~ll~~~~~~~~~~ 348 (366)
.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..++..+...+...|...
T Consensus 461 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 461 NEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp HHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence 88888887764 347888888888888888888888888888765 66777 578888888888777653
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=2.7e-24 Score=184.78 Aligned_cols=300 Identities=10% Similarity=0.049 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI 91 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 91 (366)
..+..+...+...|++++|...++...+.. +.+...|..+...+. ..|++++|+..|+++.+.. +.+..+|..
T Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 106 (388)
T 1w3b_A 34 GVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK----ERGQLQEAIEHYRHALRLK--PDFIDGYIN 106 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH----HCCCHHHHHHHHHHHHHcC--cchHHHHHH
Confidence 344444455555555555555555554432 223444555555554 2233555555555554321 223444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 017743 92 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 171 (366)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (366)
+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|+
T Consensus 107 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 184 (388)
T 1w3b_A 107 LAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGE 184 (388)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 5555555555555555555555442 1123334444445555555555555555554432 1234445555555555555
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 017743 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251 (366)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 251 (366)
+++|...|+++.... +.+...+..+...+...|++++|...+++..... +.+..++..+..++...|++++|...|+.
T Consensus 185 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 262 (388)
T 1w3b_A 185 IWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRR 262 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555555554432 1234444444444445555555555554444432 22344444444445555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 252 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
+.+.++. +..+|..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 263 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 263 AIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444322 34444444455555555555555555444432 22444444444445555555555555554444
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=2.8e-24 Score=184.71 Aligned_cols=308 Identities=13% Similarity=0.073 Sum_probs=263.4
Q ss_pred cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCH
Q 017743 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI 86 (366)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 86 (366)
+.+..+|..+...+.+.|++++|.+.|+++... .|+ ...|..+...+. ..|++++|++.|+++.+.. +.+.
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~--p~~~ 135 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALV----AAGDMEGAVQAYVSALQYN--PDLY 135 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH----HHSCSSHHHHHHHHHHHHC--TTCT
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC--CCcH
Confidence 457788999999999999999999999999875 454 456888888887 4555999999999988642 4455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (366)
..+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+...+
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 213 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVL 213 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 678888889999999999999999998874 3367889999999999999999999999998864 33678888999999
Q ss_pred hccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 017743 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 246 (366)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 246 (366)
...|++++|...+++..... +.+..++..+...+...|++++|...++++.+.. +.+..+|..+..++.+.|++++|.
T Consensus 214 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 214 KEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp HTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998853 3367889999999999999999999999999875 445778999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCC
Q 017743 247 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326 (366)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 326 (366)
..|+.+.+..+ .+..++..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...|+++.+
T Consensus 292 ~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-- 367 (388)
T 1w3b_A 292 DCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR-- 367 (388)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--
T ss_pred HHHHHHHhhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--
Confidence 99999998754 378899999999999999999999999998864 34688999999999999999999999999987
Q ss_pred CCCCh
Q 017743 327 IVPNK 331 (366)
Q Consensus 327 ~~~~~ 331 (366)
+.|+.
T Consensus 368 ~~p~~ 372 (388)
T 1w3b_A 368 ISPTF 372 (388)
T ss_dssp TCTTC
T ss_pred hCCCC
Confidence 44543
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=4.6e-23 Score=180.60 Aligned_cols=316 Identities=13% Similarity=0.023 Sum_probs=262.1
Q ss_pred cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHH
Q 017743 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 87 (366)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 87 (366)
+.+..++..+...+.+.|++++|..+|+.+.+.. +.+...+..+...+...+ ++++|+..|+++.+.. +.+..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~--p~~~~ 95 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMG----KSKAALPDLTKVIQLK--MDFTA 95 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhcC--CCcHH
Confidence 3456788999999999999999999999998763 336777888888887554 4999999999988643 55688
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCC
Q 017743 88 TYNILLRACAQARNVDQVNALFKELHESILAPDI---YTYNGV------------MDAYGKNGMIKEMESVLSRMKSNQC 152 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~ 152 (366)
++..+..++...|++++|.+.|+++.+.. +.+. ..+..+ ...+...|++++|...++++.+..
T Consensus 96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 173 (450)
T 2y4t_A 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC- 173 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 99999999999999999999999998764 2233 455555 444889999999999999998764
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 017743 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 232 (366)
Q Consensus 153 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 232 (366)
+.+..++..+..+|...|++++|.++|+++... .+.+..++..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~ 251 (450)
T 2y4t_A 174 VWDAELRELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHY 251 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 447888999999999999999999999999876 34578899999999999999999999999998764 3344555544
Q ss_pred ------------HHHhhccCcHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 017743 233 ------------ITMYGYCDNVSRAREIFDELSKLGKDMK----VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296 (366)
Q Consensus 233 ------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 296 (366)
...+...|++++|...|+.+.+..+. + ...+..+...+.+.|++++|...++++.+.. +.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~ 329 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccH
Confidence 78899999999999999999886433 3 4578889999999999999999999998764 3478
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 017743 297 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338 (366)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 338 (366)
..|..+..+|...|++++|...++++.+ +.|+.......+
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l 369 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGL 369 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHH
Confidence 9999999999999999999999999998 456654443333
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=1.9e-20 Score=158.68 Aligned_cols=310 Identities=11% Similarity=0.002 Sum_probs=253.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (366)
|+..+..+...+...|++++|...|+.+.+.. +.+...+..+...+. ..|++++|+..|+++.+.. +.+...+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~----~~~~~~~A~~~~~~~~~~~--~~~~~~~ 74 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFL----AMGKSKAALPDLTKVIALK--MDFTAAR 74 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH----HccCHHHHHHHHHHHHHhC--CCcchHH
Confidence 46678889999999999999999999998763 224666777777776 4555999999999988643 4577889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 017743 90 NILLRACAQARNVDQVNALFKELHESILA--PDIYTYNGV------------MDAYGKNGMIKEMESVLSRMKSNQCKPD 155 (366)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~ 155 (366)
..+...+...|++++|...++++.+.... .+...+..+ ...+...|++++|.+.++++.+.. +.+
T Consensus 75 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 153 (359)
T 3ieg_A 75 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWD 153 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCc
Confidence 99999999999999999999999876320 244444444 578889999999999999998864 347
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHH-----
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE----- 230 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----- 230 (366)
...+..+...+...|++++|...++++... .+.+...+..+...+...|++++|...++...+.. +.+...+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH
Confidence 888999999999999999999999999886 34578899999999999999999999999998764 33344333
Q ss_pred -------HHHHHhhccCcHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHH
Q 017743 231 -------CIITMYGYCDNVSRAREIFDELSKLGKDMKV----STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 299 (366)
Q Consensus 231 -------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 299 (366)
.+...+...|++++|...++.+.+..+. +. ..+..+..++...|++++|...+++..+.. +.+..++
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 309 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHH
Confidence 2366788999999999999999887544 33 335567889999999999999999998864 3378899
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhH
Q 017743 300 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333 (366)
Q Consensus 300 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 333 (366)
..+...+...|++++|...|++..+. .|+...
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~ 341 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQ 341 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChH
Confidence 99999999999999999999999984 466443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.7e-20 Score=164.22 Aligned_cols=326 Identities=14% Similarity=0.069 Sum_probs=255.2
Q ss_pred cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCH-
Q 017743 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI- 86 (366)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 86 (366)
+.+..+|..+...+...|++++|...|+.+.+.+ +.+...+..+...+...+ ++++|+..|+++.... +.+.
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~--~~~~~ 129 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQG----KLDEAEDDFKKVLKSN--PSENE 129 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTSC--CCHHH
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcC--CCChh
Confidence 3468889999999999999999999999998874 225677888888887544 4999999999998632 3334
Q ss_pred --HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 017743 87 --VTYNIL------------LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152 (366)
Q Consensus 87 --~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 152 (366)
..+..+ ...+...|++++|...|+++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+..
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 207 (450)
T 2y4t_A 130 EKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK- 207 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 555555 444889999999999999999874 4478889999999999999999999999998763
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHH------------HHHHHhcCcHhHHHHHHHHHHhC
Q 017743 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM------------IINYGKARLQGKAEYVFQKMTAM 220 (366)
Q Consensus 153 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~ 220 (366)
+.+..++..+...|...|++++|...|+++.... +.+...+..+ ...+...|++++|...++.+.+.
T Consensus 208 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 286 (450)
T 2y4t_A 208 NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286 (450)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4478899999999999999999999999998753 2345555544 78899999999999999999875
Q ss_pred CCCCC-----HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC
Q 017743 221 KYTPS-----FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295 (366)
Q Consensus 221 ~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 295 (366)
. |+ ...+..+..++.+.|++++|...++.+.+..+. +...|..+..+|...|++++|...++++.+.... +
T Consensus 287 ~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~ 362 (450)
T 2y4t_A 287 E--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-D 362 (450)
T ss_dssp C--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-C
T ss_pred C--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-h
Confidence 3 43 457888999999999999999999999887543 7899999999999999999999999999986422 5
Q ss_pred HHHHHHHHHHH------------Hhhc-----hHHHHHHHHHHH-HhCC--CCCC-------hhHHHHHHHHhhccccc
Q 017743 296 SSTYKLLYKAY------------TKAN-----MKELVQKLLKRM-EQNG--IVPN-------KRFFLEALETFSSSLAG 347 (366)
Q Consensus 296 ~~~~~~l~~~~------------~~~~-----~~~~a~~~~~~m-~~~g--~~~~-------~~~~~~ll~~~~~~~~~ 347 (366)
...+..+..+. ...| +.+++.+.|+++ .+.. ..|+ ...|..+-.++...++.
T Consensus 363 ~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~ 441 (450)
T 2y4t_A 363 QQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred HHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence 66666666432 2223 445667777763 3321 1122 23566666676666654
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.5e-20 Score=165.95 Aligned_cols=243 Identities=7% Similarity=-0.072 Sum_probs=158.1
Q ss_pred cCCHHHHHHHHHHHHH-----cCC--------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 017743 99 ARNVDQVNALFKELHE-----SIL--------APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165 (366)
Q Consensus 99 ~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (366)
.|++++|...|+++.+ ... +.+..++..+...+...|++++|...++++.+... +...+..+...
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHH
Confidence 5566666666666655 210 11234555666666777777777777777666532 26666667777
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHH
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 245 (366)
+...|++++|...++++.... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777776642 2345667777777777777777777777777654 33456777777777778888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC-CC----HHHHHHHHHHHHh---hchHHHHHH
Q 017743 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT-PD----SSTYKLLYKAYTK---ANMKELVQK 317 (366)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~---~~~~~~a~~ 317 (366)
...++.+.+..+. +...+..+...+...|++++|...++++.+.... ++ ...+..+...+.. .|++++|..
T Consensus 358 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~ 436 (514)
T 2gw1_A 358 ETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436 (514)
T ss_dssp HHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred HHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 8888777765433 5667777777777888888888777777653211 11 3367777777777 788888888
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHhhccccc
Q 017743 318 LLKRMEQNGIVPNKRFFLEALETFSSSLAG 347 (366)
Q Consensus 318 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 347 (366)
.++++.+.. +.+...+..+-..+...+..
T Consensus 437 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 465 (514)
T 2gw1_A 437 LLEKASKLD-PRSEQAKIGLAQMKLQQEDI 465 (514)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhcCH
Confidence 887777642 12344555555555555543
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=4.6e-20 Score=154.59 Aligned_cols=288 Identities=9% Similarity=-0.053 Sum_probs=169.4
Q ss_pred ccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCH
Q 017743 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI 86 (366)
Q Consensus 7 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 86 (366)
...+...+..+...+...|++++|.++|+.+.+... .+...+..+...+. ..+++++|...++++.+.. +.+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~----~~~~~~~A~~~~~~~~~~~--~~~~ 90 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLV----ELNKANELFYLSHKLVDLY--PSNP 90 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--TTST
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHH----HhhhHHHHHHHHHHHHHhC--cCCH
Confidence 344555666666667777777777777777665421 13334444444444 3344666666666665432 3445
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 017743 87 VTYNILLRACAQAR-NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165 (366)
Q Consensus 87 ~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (366)
..+..+...+...| ++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 168 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLE 168 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 56666666666666 6777777776666543 22455566666666667777777777666665432 234455556666
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC--------CCCCHHHHHHHHHHhh
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK--------YTPSFITYECIITMYG 237 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~ 237 (366)
+...|++++|.+.+++..... +.+...+..+...+...|++++|...+++..+.. .+....++..+..++.
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~ 247 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH
Confidence 666666777766666666542 2345666666666666666666666666655421 0222345666666666
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 017743 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 306 (366)
..|++++|...++...+..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+..++
T Consensus 248 ~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 248 KLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 666666666666666655433 45566666666666666666666666665543 22455555555554
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=5.7e-20 Score=163.64 Aligned_cols=265 Identities=9% Similarity=-0.011 Sum_probs=219.9
Q ss_pred HHHHHHHHHHHHHHhc-----CCCC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 017743 63 AKALAKALGYFQKMKG-----MERC-------KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 130 (366)
Q Consensus 63 ~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 130 (366)
.|++++|+..|+++.. .... +.+..++..+...+...|++++|...++++.+.. |+..++..+..+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHH
Confidence 3557777777777664 2111 2235678888899999999999999999999875 338888999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHH
Q 017743 131 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210 (366)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 210 (366)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++..... .+...+..+...+...|++++|
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998874 34678899999999999999999999999988643 3667888899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh---cCChhHHHH
Q 017743 211 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD-MK----VSTLNAMLEAYCM---NGLPTEADL 282 (366)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~---~g~~~~a~~ 282 (366)
...++.+.+.. +.+...+..+...+...|++++|...++.+.+.... ++ ...+..+...+.. .|++++|..
T Consensus 358 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~ 436 (514)
T 2gw1_A 358 ETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436 (514)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred HHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 99999998764 445678899999999999999999999998765322 11 4489999999999 999999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHH
Q 017743 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFL 335 (366)
Q Consensus 283 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 335 (366)
.++.+.+.. +.+..++..+...+...|++++|...|++..+. .|+.....
T Consensus 437 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~ 486 (514)
T 2gw1_A 437 LLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEKL 486 (514)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHHH
Confidence 999998865 346888999999999999999999999999984 45544333
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.2e-19 Score=150.43 Aligned_cols=286 Identities=10% Similarity=-0.029 Sum_probs=237.8
Q ss_pred CCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 017743 43 RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 122 (366)
Q Consensus 43 ~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 122 (366)
..+...+..+...+... |++++|+++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+..
T Consensus 19 ~~~~~~~~~~a~~~~~~----g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 91 (330)
T 3hym_B 19 QENLDVVVSLAERHYYN----CDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPV 91 (330)
T ss_dssp -CCCTTHHHHHHHHHHT----TCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTH
T ss_pred hhhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHH
Confidence 34556666777777644 45999999999987643 4556677788889999999999999999999874 44678
Q ss_pred hHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 017743 123 TYNGVMDAYGKNG-MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 201 (366)
Q Consensus 123 ~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 201 (366)
.+..+...+...| ++++|.+.+++..+.. +.+...+..+...+...|++++|...++++..... .+...+..+...+
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~ 169 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 8899999999999 9999999999998874 33678899999999999999999999999988643 3456677799999
Q ss_pred HhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHh
Q 017743 202 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG--------KDMKVSTLNAMLEAYCM 273 (366)
Q Consensus 202 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~ 273 (366)
...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.+.. ......++..+...+..
T Consensus 170 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 99999999999999999875 5567899999999999999999999999987642 13346789999999999
Q ss_pred cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHh
Q 017743 274 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN-KRFFLEALETF 341 (366)
Q Consensus 274 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~ 341 (366)
.|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+. .|+ ...+..+..++
T Consensus 249 ~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 999999999999998865 336788999999999999999999999998874 454 44555555555
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=9.4e-20 Score=155.20 Aligned_cols=249 Identities=9% Similarity=0.048 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 017743 66 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 145 (366)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 145 (366)
+++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..++...|++++|.+.++
T Consensus 80 ~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (368)
T 1fch_A 80 LPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILR 156 (368)
T ss_dssp HHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566666666655422 3445555556666666666666666666655543 2345555555666666666666666666
Q ss_pred HHHHCCCCCCHHHHHH---------------HHHHHhccCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCcHhH
Q 017743 146 RMKSNQCKPDIITFNL---------------LIDSYGKRQAFDKMEQVFKSLMHSKEKP-TLPTFNSMIINYGKARLQGK 209 (366)
Q Consensus 146 ~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~ 209 (366)
++.+.... +...+.. .+..+...|++++|...|+++....... +..++..+...+...|++++
T Consensus 157 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 235 (368)
T 1fch_A 157 DWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 235 (368)
T ss_dssp HHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHH
Confidence 65554321 1111110 1222225556666666666655532211 35555555566666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 210 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
|...++++.+.. +.+..++..+...+...|++++|...|+.+.+..+. +...+..+..+|...|++++|...|+++.+
T Consensus 236 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 236 AVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666555442 333455555666666666666666666665554322 455555566666666666666666655544
Q ss_pred CCCCC----------CHHHHHHHHHHHHhhchHHHHHHHHH
Q 017743 290 MGVTP----------DSSTYKLLYKAYTKANMKELVQKLLK 320 (366)
Q Consensus 290 ~~~~p----------~~~~~~~l~~~~~~~~~~~~a~~~~~ 320 (366)
..... ...+|..+..++...|++++|..+++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 314 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 32110 14555556666666666665555544
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1.4e-17 Score=140.94 Aligned_cols=288 Identities=14% Similarity=0.052 Sum_probs=232.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCC---C
Q 017743 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK---P 84 (366)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~ 84 (366)
.+..++..+...+...|++++|...|+.+.+.. | +...+..+...+. ..|++++|+..|++..+.. + .
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~--~~~~~ 106 (359)
T 3ieg_A 35 DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHLLL----KQGKLDEAEDDFKKVLKSN--PSEQE 106 (359)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHTSC--CCHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHH----HcCChHHHHHHHHHHHhcC--CcccC
Confidence 457789999999999999999999999998763 4 5566777777776 5556999999999998632 2 2
Q ss_pred CHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 017743 85 NIVTYNIL------------LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 152 (366)
Q Consensus 85 ~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 152 (366)
+...+..+ ...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.+..
T Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 184 (359)
T 3ieg_A 107 EKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK- 184 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 44555555 578899999999999999999874 4577889999999999999999999999998874
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHH------------HHHHHHHhcCcHhHHHHHHHHHHhC
Q 017743 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN------------SMIINYGKARLQGKAEYVFQKMTAM 220 (366)
Q Consensus 153 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~~~~~ 220 (366)
+.+..++..+...+...|++++|...+++..+... .+...+. .+...+.+.|++++|...+++..+.
T Consensus 185 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 185 SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263 (359)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44788999999999999999999999999988633 2344333 2366688999999999999999876
Q ss_pred CCCCCH----HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 017743 221 KYTPSF----ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296 (366)
Q Consensus 221 ~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 296 (366)
. +.+. ..+..+..++...|++++|...++...+..+. +...+..+...+...|++++|...|+++.+... -+.
T Consensus 264 ~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~ 340 (359)
T 3ieg_A 264 E-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQ 340 (359)
T ss_dssp C-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCH
T ss_pred C-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCh
Confidence 4 2233 33556788999999999999999999987543 788999999999999999999999999998652 246
Q ss_pred HHHHHHHHHHHhhc
Q 017743 297 STYKLLYKAYTKAN 310 (366)
Q Consensus 297 ~~~~~l~~~~~~~~ 310 (366)
..+..+..+....+
T Consensus 341 ~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 341 QIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666654433
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=2.8e-18 Score=153.59 Aligned_cols=253 Identities=9% Similarity=-0.004 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 017743 65 ALAKALGYFQKMKGMERCKPN-------IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMI 137 (366)
Q Consensus 65 ~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 137 (366)
.+++|+.+++++.+.. +.+ ..++..+...+...|++++|...++++.+.. |+..++..+...+...|++
T Consensus 217 ~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCH
Confidence 4555555555555421 222 2245556666777778888888888877753 4566777777777788888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHH
Q 017743 138 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217 (366)
Q Consensus 138 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 217 (366)
++|.+.++++.+.. +.+..++..+...+...|++++|...++++..... .+...+..+...+...|++++|...++++
T Consensus 293 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 293 QEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888777653 33567777777888888888888888888777532 34566777777788888888888888877
Q ss_pred HhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhc----------CChhHHHH
Q 017743 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK-----DMKVSTLNAMLEAYCMN----------GLPTEADL 282 (366)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~----------g~~~~a~~ 282 (366)
.+.. +.+...+..+...+...|++++|...|+.+.+..+ ......+......+... |++++|..
T Consensus 371 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~ 449 (537)
T 3fp2_A 371 KLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449 (537)
T ss_dssp HHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHH
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHH
Confidence 7654 44456777777888888888888888877665321 11223344455666666 88888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 283 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 283 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
.++++.+.. +.+...+..+...+...|++++|...|++..+.
T Consensus 450 ~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 450 LLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888877754 336778888888888888888888888888874
No 17
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=5.2e-18 Score=151.84 Aligned_cols=322 Identities=9% Similarity=-0.018 Sum_probs=224.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (366)
...|..+...+.+.|++++|...|+++.... +.+...+..+...+. ..|++++|++.|+++.+.. +.+..++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~--p~~~~~~~ 97 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYI----STGDLEKVIEFTTKALEIK--PDHSKALL 97 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH----HcCCHHHHHHHHHHHHhcC--CchHHHHH
Confidence 3456666777777777777777777776653 124555666666665 3344777777777766532 44566677
Q ss_pred HHHHHHHhcCCHHHHHHHHH------------------------------------------------------------
Q 017743 91 ILLRACAQARNVDQVNALFK------------------------------------------------------------ 110 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~------------------------------------------------------------ 110 (366)
.+..++...|++++|...|+
T Consensus 98 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 98 RRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 77777777777777766653
Q ss_pred -------------------------------------------------HHHHcCCCCC--------hhhHHHHHHHHHh
Q 017743 111 -------------------------------------------------ELHESILAPD--------IYTYNGVMDAYGK 133 (366)
Q Consensus 111 -------------------------------------------------~~~~~~~~~~--------~~~~~~ll~~~~~ 133 (366)
++.+. .|+ ..++..+...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHh
Confidence 22221 122 1234555566777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHH
Q 017743 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213 (366)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 213 (366)
.|++++|...++++.+. .|+...+..+...+...|++++|.+.++++.... +.+..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 88888888888888775 4557778888888888888888888888887753 34677788888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC--
Q 017743 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG-- 291 (366)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-- 291 (366)
+++..+.. +.+...+..+..++...|++++|...++.+.+..+. +...+..+...+...|++++|...++++.+..
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 88888764 334567888888888888888888888888877544 57788888888888888888888888876532
Q ss_pred ---CCCCHHHHHHHHHHHHhh----------chHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccccc
Q 017743 292 ---VTPDSSTYKLLYKAYTKA----------NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347 (366)
Q Consensus 292 ---~~p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 347 (366)
.......+......+... |++++|...+++..+.. +.+...+..+-..+...|..
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccH
Confidence 111223345555667777 88899998888888743 12345666666666666654
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=5e-19 Score=150.58 Aligned_cols=264 Identities=10% Similarity=0.031 Sum_probs=186.2
Q ss_pred hhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 017743 47 SVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 126 (366)
Q Consensus 47 ~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 126 (366)
..+..+...+. ..|++++|+..|+++.... +.+..+|..+...+...|++++|...|+++.+.. +.+..++..
T Consensus 66 ~~~~~~~~~~~----~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 138 (365)
T 4eqf_A 66 PGAFEEGLKRL----KEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMA 138 (365)
T ss_dssp TTHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHH----HCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 34555555555 4455888888888877533 5567788888888888888888888888887764 335777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CCHHHH
Q 017743 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPD-----------IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTF 194 (366)
Q Consensus 127 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 194 (366)
+..+|...|++++|...++++.+.. |+ ...+..+...+...|++++|...++++...... ++..++
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 8888888888888888888877642 22 222334567778888888888888888775332 157778
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 017743 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274 (366)
Q Consensus 195 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 274 (366)
..+...+...|++++|...+++..+.. +.+..+|..+..++...|++++|...|+.+.+..+. +..++..+..+|...
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHC
Confidence 888888888888888888888887764 445778888888888888888888888888776543 577788888888888
Q ss_pred CChhHHHHHHHHhhhCCCC-----------CCHHHHHHHHHHHHhhchHHHHHHHHHH
Q 017743 275 GLPTEADLLFENSHNMGVT-----------PDSSTYKLLYKAYTKANMKELVQKLLKR 321 (366)
Q Consensus 275 g~~~~a~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (366)
|++++|...|+++.+.... .+...|..+..++...|+.+.+..+.++
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8888888888877653211 1256778888888888888777766544
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=1.7e-18 Score=147.45 Aligned_cols=268 Identities=10% Similarity=0.015 Sum_probs=220.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (366)
+...+..+...+.+.|++++|...|+.+.+.. +.+...+..+...+... |++++|+..|+++.+.. +.+..++
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~--~~~~~~~ 135 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAEN----EQELLAISALRRCLELK--PDNQTAL 135 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC----cCHHHHHHHHHHHHhcC--CCCHHHH
Confidence 35668889999999999999999999999864 23566777777777744 45999999999988643 5678899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH---------------HHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 017743 90 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNG---------------VMDAYGKNGMIKEMESVLSRMKSNQCKP 154 (366)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 154 (366)
..+...+...|++++|...++++...... +...+.. .+..+...|++++|...++++.+.....
T Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 214 (368)
T 1fch_A 136 MALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS 214 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCc
Confidence 99999999999999999999999986522 2222221 2344448999999999999998864321
Q ss_pred -CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017743 155 -DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 233 (366)
Q Consensus 155 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 233 (366)
+..++..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 215 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~ 292 (368)
T 1fch_A 215 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLG 292 (368)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 57889999999999999999999999998863 4468899999999999999999999999998764 45678999999
Q ss_pred HHhhccCcHHHHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 234 TMYGYCDNVSRAREIFDELSKLGKDM----------KVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
.++...|++++|...|+.+.+..+.. ...+|..+..++...|++++|..++.+.
T Consensus 293 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 293 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 99999999999999999987653321 2688999999999999999999887743
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=1.4e-18 Score=147.74 Aligned_cols=267 Identities=9% Similarity=-0.006 Sum_probs=216.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (366)
+...+..+...+.+.|++++|...|+.+.+.. +.+...+..+...+...+ ++++|+..|++..... +.+..++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~--p~~~~~~ 136 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENE----NEQAAIVALQRCLELQ--PNNLKAL 136 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhcC--CCCHHHH
Confidence 45568889999999999999999999998764 236677888888887554 4999999999988643 5568899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHH
Q 017743 90 NILLRACAQARNVDQVNALFKELHESILAPDIY----------TYNGVMDAYGKNGMIKEMESVLSRMKSNQCK-PDIIT 158 (366)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 158 (366)
..+...|...|++++|...++++.+... .+.. .+..+...+...|++++|...++++.+.... ++..+
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 215 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQNP-KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDL 215 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCc-cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHH
Confidence 9999999999999999999999988631 1222 2334578899999999999999999887432 16889
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 017743 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238 (366)
Q Consensus 159 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (366)
+..+...+...|++++|.+.|+++.+.. +.+..+|..+..+|...|++++|...+++..+.. +.+..++..+..++..
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHH
Confidence 9999999999999999999999998863 4478899999999999999999999999998874 4458899999999999
Q ss_pred cCcHHHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 017743 239 CDNVSRAREIFDELSKLGKD-----------MKVSTLNAMLEAYCMNGLPTEADLLFEN 286 (366)
Q Consensus 239 ~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (366)
.|++++|...|+.+.+..+. .+...|..+..++...|+.+.+.++..+
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999998764321 1367899999999999999999887765
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=2.4e-18 Score=143.93 Aligned_cols=233 Identities=9% Similarity=0.015 Sum_probs=158.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL--- 161 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 161 (366)
+..++..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+.... +...+..
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 131 (327)
T 3cv0_A 54 REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQ 131 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhH
Confidence 33444444445555555555555555554442 223444444555555555555555555555443211 1111111
Q ss_pred ----------H-HH-HHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHH
Q 017743 162 ----------L-ID-SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229 (366)
Q Consensus 162 ----------l-~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 229 (366)
+ .. .+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 209 (327)
T 3cv0_A 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLW 209 (327)
T ss_dssp --------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHH
Confidence 1 22 3777888889998888887763 3367788888888888999999999998888764 4457788
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-----------CHHH
Q 017743 230 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP-----------DSST 298 (366)
Q Consensus 230 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-----------~~~~ 298 (366)
..+...+...|++++|...++.+.+..+. +...+..+...+...|++++|.+.++++.+..... +..+
T Consensus 210 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 288 (327)
T 3cv0_A 210 NKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM 288 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHH
Confidence 88888899999999999999988876543 67888889999999999999999998887653221 4678
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHH
Q 017743 299 YKLLYKAYTKANMKELVQKLLKRM 322 (366)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~m 322 (366)
|..+..++...|++++|..++++.
T Consensus 289 ~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 289 WDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 888999999999999998887654
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=3.1e-18 Score=143.19 Aligned_cols=268 Identities=9% Similarity=0.002 Sum_probs=219.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 89 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (366)
+...+..+...+...|++++|..+|+.+.+... .+...+..+...+... |++++|...|+++.+.. +.+..++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~----~~~~~A~~~~~~a~~~~--~~~~~~~ 92 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAEN----EKDGLAIIALNHARMLD--PKDIAVH 92 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcC--cCCHHHH
Confidence 445677788999999999999999999987642 2566777777777744 44999999999987643 5678899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCC
Q 017743 90 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV--------------MD-AYGKNGMIKEMESVLSRMKSNQCKP 154 (366)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~ 154 (366)
..+...+...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|.+.++++.+.. +.
T Consensus 93 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~ 170 (327)
T 3cv0_A 93 AALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PN 170 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CC
Confidence 999999999999999999999999864 2233334333 22 3778899999999999998874 33
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017743 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234 (366)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 234 (366)
+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 248 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAV 248 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 78889999999999999999999999998863 4468889999999999999999999999998764 456788999999
Q ss_pred HhhccCcHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 017743 235 MYGYCDNVSRAREIFDELSKLGKDM-----------KVSTLNAMLEAYCMNGLPTEADLLFENSH 288 (366)
Q Consensus 235 ~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (366)
++...|++++|...++.+.+..+.. +...|..+..++...|++++|..++++..
T Consensus 249 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 249 SYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999999988764432 47789999999999999999999987654
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=6e-18 Score=138.68 Aligned_cols=274 Identities=12% Similarity=0.054 Sum_probs=190.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCh--hhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 017743 18 IAVMGKKGQTRLAMWLFSEMRNSGCRPDP--SVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 95 (366)
Q Consensus 18 i~~~~~~~~~~~A~~~~~~~~~~g~~p~~--~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (366)
++.....|++..|+..++..... .|+. .....+.+++...+ +++.|+..++.. .+|+..++..+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g----~~~~al~~~~~~-----~~~~~~a~~~la~~ 74 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQR----KYGVVLDEIKPS-----SAPELQAVRMFAEY 74 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTT----CHHHHHHHSCTT-----SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCC----CHHHHHHHhccc-----CChhHHHHHHHHHH
Confidence 44556678888888887765432 3433 23344556666443 477777655431 25677778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhH
Q 017743 96 CAQARNVDQVNALFKELHESILAP-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 174 (366)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 174 (366)
+...++.++|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++
T Consensus 75 ~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~ 148 (291)
T 3mkr_A 75 LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDL 148 (291)
T ss_dssp HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHH
T ss_pred HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHH
Confidence 888888888888888887765434 445566666788888888888888877 4577788888888888888888
Q ss_pred HHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 017743 175 MEQVFKSLMHSKEKPTLPTF---NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 251 (366)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 251 (366)
|.+.|+++.... |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...|++
T Consensus 149 A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 149 ARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888887753 332211 122333445588888888888888763 56777888888888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHH
Q 017743 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTE-ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317 (366)
Q Consensus 252 ~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 317 (366)
+.+..+. ++.++..++..+...|+.++ +.++++++.+.. |+... +.+...+.+.++++..
T Consensus 226 al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 226 ALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHH
Confidence 8877654 77788888888888888865 567888877753 44322 2233455555555543
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=4.3e-17 Score=133.58 Aligned_cols=254 Identities=13% Similarity=0.078 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNI--VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 139 (366)
..|.++.|+..++..... .|+. .....+.++|...|+++.|...++. .-+|+..++..+...+...++.++
T Consensus 11 ~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 445588999988876542 3443 4556778999999999999987754 235677888899999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Q 017743 140 MESVLSRMKSNQCKP-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 218 (366)
Q Consensus 140 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 218 (366)
|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...++++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998876544 566677778999999999999999987 4678899999999999999999999999999
Q ss_pred hCCCCCCHHH---HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC
Q 017743 219 AMKYTPSFIT---YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295 (366)
Q Consensus 219 ~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 295 (366)
+.. |+... ...++..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|...+++..+.. +-+
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~ 233 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH 233 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 874 44321 12334445566999999999999998854 488999999999999999999999999998875 337
Q ss_pred HHHHHHHHHHHHhhchHHH-HHHHHHHHHhCCCCCChhHH
Q 017743 296 SSTYKLLYKAYTKANMKEL-VQKLLKRMEQNGIVPNKRFF 334 (366)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~~g~~~~~~~~ 334 (366)
..++..++..+...|+.++ +.++++++.+ +.|+....
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~ 271 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFI 271 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHH
Confidence 8899999999999999876 6789999887 44665443
No 25
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=4e-20 Score=167.55 Aligned_cols=151 Identities=7% Similarity=-0.005 Sum_probs=110.0
Q ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHh---CCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHH
Q 017743 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTA---MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266 (366)
Q Consensus 190 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 266 (366)
-..+|+++|.+|++.|+.++|.++|.+|.+ .|+.||..+||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345788888888888888888888877654 36788888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCh-hHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCC------hhHHHHHHH
Q 017743 267 MLEAYCMNGLP-TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN------KRFFLEALE 339 (366)
Q Consensus 267 li~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~------~~~~~~ll~ 339 (366)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+.+ +++..+++ +-++.|+ ..+...+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 88888888874 677888888888888888888888876555543 33344444 3345544 334444455
Q ss_pred Hhhccc
Q 017743 340 TFSSSL 345 (366)
Q Consensus 340 ~~~~~~ 345 (366)
.+++.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555544
No 26
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=1e-19 Score=164.88 Aligned_cols=120 Identities=16% Similarity=0.262 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELH---ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (366)
-..+||++|++|++.|++++|.++|++|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 35689999999999999999999998876 457999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCh-hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 017743 162 LIDSYGKRQAF-DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204 (366)
Q Consensus 162 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 204 (366)
+|.++++.|+. ++|.++|++|...|+.||..+|+.++.++.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 99999999985 78999999999999999999999988766554
No 27
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.4e-16 Score=128.43 Aligned_cols=240 Identities=13% Similarity=-0.023 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHH
Q 017743 86 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK--PD----IITF 159 (366)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 159 (366)
...+..+...+...|++++|...|+++.+.. .+..++..+..++...|++++|.+.+++..+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567888899999999999999999999887 68889999999999999999999999998764211 12 5788
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 017743 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 239 (366)
Q Consensus 160 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 239 (366)
..+...+...|++++|...|++.... .|+. ..+...|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88999999999999999999999884 3443 34566788999999999998864 34567888999999999
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHH
Q 017743 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 319 (366)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (366)
|++++|...++.+.+..+. +...+..+...+...|++++|...+++..+.. +.+...|..+...+...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999887654 78899999999999999999999999998875 346888999999999999999999999
Q ss_pred HHHHhCC----CCCChhHHHHHHH
Q 017743 320 KRMEQNG----IVPNKRFFLEALE 339 (366)
Q Consensus 320 ~~m~~~g----~~~~~~~~~~ll~ 339 (366)
++..+.. ..|+.......+.
T Consensus 231 ~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 231 DAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHhChhhcCCCchHHHHHHHH
Confidence 9987632 2255544444443
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=1.1e-17 Score=140.55 Aligned_cols=239 Identities=15% Similarity=0.167 Sum_probs=80.6
Q ss_pred hcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCH
Q 017743 23 KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102 (366)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 102 (366)
+.|++++|.+.++++. ++.+|..+..++. ..+.+++|++.|.+ .+|..+|..++..+...|++
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l----~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~ 77 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQL----QKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHH----HcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCH
Confidence 4466777777777662 2236777766666 44447777777744 24555677777777777777
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 017743 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182 (366)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 182 (366)
++|..+++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 78 EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 7777766655553 3445666677777777777777666663 255667777777777777777777777755
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHH
Q 017743 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262 (366)
Q Consensus 183 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 262 (366)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad 208 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHAD 208 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHh
Confidence 25677777777777777777777766 2566777777777777777777444332 222344
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 017743 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308 (366)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 308 (366)
....++..|.+.|++++|..+++...... +-....|.-+..+|++
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 45566777777777777777777666543 3344455554444443
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=3.1e-17 Score=137.86 Aligned_cols=268 Identities=12% Similarity=0.116 Sum_probs=135.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Q 017743 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 88 (366)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 88 (366)
+++.+|..++.++.+.|++++|++.|.+ .+|..+|..++..+. ..|.+++|+.+++...+. .+++.+
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae----~~g~~EeAi~yl~~ark~---~~~~~i 96 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAAN----TSGNWEELVKYLQMARKK---ARESYV 96 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHh---Cccchh
Confidence 4456999999999999999999999965 357779999998887 566799999988877652 456788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (366)
.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..++.++.+
T Consensus 97 ~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~ 160 (449)
T 1b89_A 97 ETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVH 160 (449)
T ss_dssp ------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHH
Confidence 9999999999999999998884 367789999999999999999999999976 378999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 248 (366)
.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-...++..|.+.|++++|..+
T Consensus 161 Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 161 LGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp TTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999998 37899999999999999999996554432 23333455799999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh-CCCCC------CHHHHHHHHHHHHhhchHHHHHHH
Q 017743 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN-MGVTP------DSSTYKLLYKAYTKANMKELVQKL 318 (366)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~p------~~~~~~~l~~~~~~~~~~~~a~~~ 318 (366)
++...... +-....|+-|.-+|++- ++++..+.++.... .+++| +...|.-++-.|.+.++++.|..+
T Consensus 230 Le~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 230 LEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 99998776 44788899888888875 34444443333222 22333 345688888888899999988753
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.75 E-value=4.5e-16 Score=122.01 Aligned_cols=198 Identities=12% Similarity=-0.035 Sum_probs=96.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 017743 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199 (366)
Q Consensus 120 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 199 (366)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 33344444444444444444444444444332 1234444444444444444444444444444431 123344444444
Q ss_pred HHHhc-----------CcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017743 200 NYGKA-----------RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268 (366)
Q Consensus 200 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 268 (366)
.+... |++++|...+++..+.. +-+...+..+..++...|++++|...|++..+.+ .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 44444 66666666666665543 2335556666666666666666666666666655 3566666666
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
.++...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 66666666666666666666543 2245566666666666666666666665543
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.74 E-value=5e-16 Score=121.75 Aligned_cols=200 Identities=12% Similarity=0.032 Sum_probs=151.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (366)
+++...+..+...+...|++++|...|++.++.. +.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4566778888888888889999998888888764 3467778888888888889999988888888764 3366778888
Q ss_pred HHHHhcc-----------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHH
Q 017743 163 IDSYGKR-----------QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 231 (366)
Q Consensus 163 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 231 (366)
..++... |++++|+..|++..+.. +.+...+..+...+...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 8888888 99999999999988753 3367788888888999999999999999988876 67788888
Q ss_pred HHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 017743 232 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288 (366)
Q Consensus 232 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (366)
+..++...|++++|...|+...+..+. +...+..+...+...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 899999999999999999998887654 67888888889999999999988887654
No 32
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.74 E-value=2.6e-13 Score=119.95 Aligned_cols=258 Identities=12% Similarity=-0.006 Sum_probs=127.4
Q ss_pred CHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC
Q 017743 10 DTGIYSKLIAVMGK----KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85 (366)
Q Consensus 10 ~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 85 (366)
++.++..+...|.. .+++++|...|+...+.| +...+..+-..+.......++.++|++.|++..+ ..+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----~~~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL----KGL 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTC
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----CCC
Confidence 44555555555555 566666666666666543 3334444444443200002236666666666554 234
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHH
Q 017743 86 IVTYNILLRACAQ----ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK----NGMIKEMESVLSRMKSNQCKPDII 157 (366)
Q Consensus 86 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 157 (366)
...+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|.+.|++..+.| +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 4555555555555 556666666666665543 34455555555554 455666666666655543 444
Q ss_pred HHHHHHHHHhc----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCcHhHHHHHHHHHHhCCCCCCHHHH
Q 017743 158 TFNLLIDSYGK----RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK----ARLQGKAEYVFQKMTAMKYTPSFITY 229 (366)
Q Consensus 158 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 229 (366)
.+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55555555554 555555555555555432 33344444444443 445555555555544432 22233
Q ss_pred HHHHHHhhc----cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHhhh
Q 017743 230 ECIITMYGY----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN-----GLPTEADLLFENSHN 289 (366)
Q Consensus 230 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~ 289 (366)
..+...+.. .++.++|...|+...+.+ +...+..+...|... +++++|...+++..+
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 333333333 444444544444444432 233334444444443 444444444444443
No 33
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.74 E-value=2.1e-13 Score=120.58 Aligned_cols=291 Identities=12% Similarity=0.040 Sum_probs=154.2
Q ss_pred CHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC
Q 017743 10 DTGIYSKLIAVMGK----KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN 85 (366)
Q Consensus 10 ~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 85 (366)
++.++..+...|.. .+++++|.+.|++..+.| +...+..+-..+.......+++++|+..|++..+ .-+
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----~~~ 146 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE----QGR 146 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTC
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----CCC
Confidence 44556666666666 677777777777776643 3344444444443210002336677777776664 234
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHH
Q 017743 86 IVTYNILLRACAQ----ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK----NGMIKEMESVLSRMKSNQCKPDII 157 (366)
Q Consensus 86 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 157 (366)
...+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .++.++|.+.|++..+.| +..
T Consensus 147 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 220 (490)
T 2xm6_A 147 DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DEL 220 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHH
Confidence 5556666666665 566777777776666653 45556666666665 566666666666666543 344
Q ss_pred HHHHHHHHHhc----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCcHhHHHHHHHHHHhCCCCCCHHHH
Q 017743 158 TFNLLIDSYGK----RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK----ARLQGKAEYVFQKMTAMKYTPSFITY 229 (366)
Q Consensus 158 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 229 (366)
.+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+
T Consensus 221 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~ 294 (490)
T 2xm6_A 221 GQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQ 294 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHH
Confidence 45555555543 556666666666655432 23344444444444 455555555555555432 22334
Q ss_pred HHHHHHhhcc-----CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHhhhCCCCCCHHHHHH
Q 017743 230 ECIITMYGYC-----DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG---LPTEADLLFENSHNMGVTPDSSTYKL 301 (366)
Q Consensus 230 ~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~ 301 (366)
..+...|... +++++|...|+...+.+ +...+..+...|...| ++++|.+.|++..+.| +...+..
T Consensus 295 ~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 368 (490)
T 2xm6_A 295 YYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFN 368 (490)
T ss_dssp HHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHH
Confidence 4444444443 45555555555554443 2334444444444433 4445555555544432 3444444
Q ss_pred HHHHHHh----hchHHHHHHHHHHHHhC
Q 017743 302 LYKAYTK----ANMKELVQKLLKRMEQN 325 (366)
Q Consensus 302 l~~~~~~----~~~~~~a~~~~~~m~~~ 325 (366)
+...|.. .+++++|..+|++..+.
T Consensus 369 Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 369 LGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 4444444 44555555555554443
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.74 E-value=2.4e-15 Score=122.21 Aligned_cols=249 Identities=12% Similarity=0.013 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD--IITFNLLID 164 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 164 (366)
..+......+...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.+++..+....++ ...|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 445667788889999999999999998864 33566888889999999999999999999988432222 344788889
Q ss_pred HHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHH
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 244 (366)
.+...|++++|.+.|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998863 3366788899999999999999999999988773 4456777777734444569999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhCC-CCCC------HHHHHHHHHHHHhhchHHH
Q 017743 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGL---PTEADLLFENSHNMG-VTPD------SSTYKLLYKAYTKANMKEL 314 (366)
Q Consensus 245 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~~~~~~ 314 (366)
|...|+.+.+..+. +...+..+...+...|+ +++|...+++..+.. -.|+ ..+|..+...|...|++++
T Consensus 161 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999887544 57788888888888888 888988888876531 1133 2578888889999999999
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHh
Q 017743 315 VQKLLKRMEQNGIVPNKRFFLEALETF 341 (366)
Q Consensus 315 a~~~~~~m~~~g~~~~~~~~~~ll~~~ 341 (366)
|...+++..+ +.|+.......+...
T Consensus 240 A~~~~~~al~--~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 240 ADAAWKNILA--LDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHC--
T ss_pred HHHHHHHHHh--cCccHHHHHHHhhhh
Confidence 9999999998 447665554444433
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.2e-15 Score=121.33 Aligned_cols=226 Identities=9% Similarity=-0.010 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCC-CCCC----
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-CKPN---- 85 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~---- 85 (366)
...|..+...+...|++++|...|+...+.. .+...+..+...+...++ +++|+..+++..+... ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~----~~~A~~~~~~a~~~~~~~~~~~~~~ 78 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGE----YETAISTLNDAVEQGREMRADYKVI 78 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHccc----HHHHHHHHHHHHHhCcccccchHHH
Confidence 4567777777888888888888888877665 556666666666654333 6666666666553210 0111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 017743 86 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165 (366)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (366)
..++..+...+...|++++|...++++.+.. |+. ..+...|++++|...++.+.... +.+...+..+...
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHH
Confidence 4566666667777777777777777666642 332 23444455666666666655542 1234445555555
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHH
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 245 (366)
+...|++++|...+++..... +.+..++..+...+...|++++|...++...+.. +.+...+..+..++...|++++|
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 555555555555555555432 2234445555555555555555555555554432 22344444455555555555555
Q ss_pred HHHHHHHHh
Q 017743 246 REIFDELSK 254 (366)
Q Consensus 246 ~~~~~~~~~ 254 (366)
...++...+
T Consensus 227 ~~~~~~a~~ 235 (258)
T 3uq3_A 227 LETLDAART 235 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
No 36
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.73 E-value=3.2e-14 Score=115.74 Aligned_cols=225 Identities=13% Similarity=0.024 Sum_probs=188.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 017743 84 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK----NGMIKEMESVLSRMKSNQCKPDIITF 159 (366)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 159 (366)
-+..++..+...+...|++++|.+.|++..+. -+..++..+...+.. .+++++|...|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45677888888888999999999999988873 356778888888888 899999999999988875 67788
Q ss_pred HHHHHHHhc----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCcHhHHHHHHHHHHhCCCCCCHHHHHH
Q 017743 160 NLLIDSYGK----RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK----ARLQGKAEYVFQKMTAMKYTPSFITYEC 231 (366)
Q Consensus 160 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 231 (366)
..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 888888888 899999999999988864 67788888888888 899999999999988865 4566777
Q ss_pred HHHHhhc----cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 017743 232 IITMYGY----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM----NGLPTEADLLFENSHNMGVTPDSSTYKLLY 303 (366)
Q Consensus 232 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 303 (366)
+...+.. .+++++|...|+...+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 7777777 889999999999988875 56778888888888 899999999999988864 367788888
Q ss_pred HHHHh----hchHHHHHHHHHHHHhCC
Q 017743 304 KAYTK----ANMKELVQKLLKRMEQNG 326 (366)
Q Consensus 304 ~~~~~----~~~~~~a~~~~~~m~~~g 326 (366)
..|.. .+++++|.++|++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 88888 889999999999988865
No 37
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.72 E-value=2e-15 Score=122.83 Aligned_cols=248 Identities=8% Similarity=-0.102 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 017743 62 KAKALAKALGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 139 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 139 (366)
..+++++|+..|+++.+.... +.+..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346689999999998863211 1246678889999999999999999999999875 3467889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHh
Q 017743 140 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219 (366)
Q Consensus 140 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 219 (366)
|.+.++++.+.. +.+...+..+...+...|++++|...|+++.... |+.......+..+...|++++|...+.....
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999998864 3367888999999999999999999999998853 3333444444555677999999999988776
Q ss_pred CCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 017743 220 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM---KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 296 (366)
Q Consensus 220 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 296 (366)
.. +++...+. ++..+...++.++|...++...+..... +...+..+...|...|++++|...|++..... |+.
T Consensus 173 ~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 248 (275)
T ss_dssp HS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred cC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence 53 33444443 6667777888899999998887653221 25778889999999999999999999998864 422
Q ss_pred HHHHHHHHHHHhhchHHHHHHHH
Q 017743 297 STYKLLYKAYTKANMKELVQKLL 319 (366)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~ 319 (366)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 233355777889998888766
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.72 E-value=9.6e-15 Score=117.26 Aligned_cols=201 Identities=10% Similarity=0.032 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 017743 86 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165 (366)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (366)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3455555666666666666666666665542 2244455555555555555555555555554432 1234444444555
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHH
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 245 (366)
+...|++++|.++++++...+..| .+...+..+...+...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~----------------------------------~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYP----------------------------------ERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCT----------------------------------THHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCc----------------------------------ccHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555544411112 1233444444445555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
...++.+.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.++++++.+
T Consensus 161 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555554444322 34445555555555555555555555554432 22444455555555555555555555555554
No 39
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.71 E-value=1.4e-14 Score=114.08 Aligned_cols=201 Identities=10% Similarity=-0.049 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (366)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34556666666666666666666666666543 2244555555666666666666666666655442 224445555555
Q ss_pred HHhcc-CChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcH
Q 017743 165 SYGKR-QAFDKMEQVFKSLMHSKEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242 (366)
Q Consensus 165 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 242 (366)
.+... |++++|...++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 55555 55555555555555421112 13344444445555555555555555444432 22234444444444444444
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 017743 243 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288 (366)
Q Consensus 243 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (366)
++|...++.+.+..+..+...+..+...+...|+.+++..+++.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4444444444443221133344444444444444444444444443
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.71 E-value=2e-14 Score=121.79 Aligned_cols=250 Identities=8% Similarity=-0.017 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017743 86 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-IKEMESVLSRMKSNQCKPDIITFNLLID 164 (366)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (366)
...|+.+...+...|++++|+..++++++.. +-+..+|+.+..++...|+ +++|+..|+++.+.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4578888889999999999999999999875 3367889999999999997 99999999999987533 7889999999
Q ss_pred HHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc-cCcHH
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY-CDNVS 243 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 243 (366)
++...|++++|+..|++++... +.+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999863 3478899999999999999999999999999875 4568899999999988 56657
Q ss_pred HH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhc------
Q 017743 244 RA-----REIFDELSKLGKDMKVSTLNAMLEAYCMNG--LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN------ 310 (366)
Q Consensus 244 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~------ 310 (366)
+| +..++......+. +...|..+...+...| ++++|++.+.++ +.. +.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 77 5888888887655 7888999999999888 689999999988 443 446788889999998874
Q ss_pred ---hHHHHHHHHHHH-HhCCCCCCh-hHHHHHHHHhhcc
Q 017743 311 ---MKELVQKLLKRM-EQNGIVPNK-RFFLEALETFSSS 344 (366)
Q Consensus 311 ---~~~~a~~~~~~m-~~~g~~~~~-~~~~~ll~~~~~~ 344 (366)
..++|.++++++ .+ +.|.. ..|..+...+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHH
Confidence 358999999998 55 44554 4455555555443
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.70 E-value=1.6e-14 Score=115.92 Aligned_cols=202 Identities=11% Similarity=-0.034 Sum_probs=163.4
Q ss_pred hhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 017743 46 PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN 125 (366)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 125 (366)
...+..+...+.. .+++++|+..|+++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+.
T Consensus 37 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 109 (252)
T 2ho1_A 37 RDAYIQLGLGYLQ----RGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLN 109 (252)
T ss_dssp HHHHHHHHHHHHH----TTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHH
Confidence 4556666666664 455999999999988643 5578899999999999999999999999999874 34678889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 017743 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKP-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204 (366)
Q Consensus 126 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 204 (366)
.+...+...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.+++..... +.+...+..+...+...
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc
Confidence 99999999999999999999998733334 56778888889999999999999999988763 33577788888888888
Q ss_pred CcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 017743 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
|++++|...++.+.+.. +.+...+..+...+...|+.++|.+.++.+.+..
T Consensus 189 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp TCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 88888888888887754 4556677777778888888888888888877764
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.70 E-value=3.4e-14 Score=111.77 Aligned_cols=214 Identities=10% Similarity=0.051 Sum_probs=172.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 017743 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199 (366)
Q Consensus 120 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 199 (366)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.... +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45667788888999999999999999888763 3467788888889999999999999999988763 346778888888
Q ss_pred HHHhc-CcHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 017743 200 NYGKA-RLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277 (366)
Q Consensus 200 ~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 277 (366)
.+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++.+.+..+. +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 99999 999999999999887332343 567888888899999999999999998877544 678888899999999999
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 017743 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338 (366)
Q Consensus 278 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 338 (366)
++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+. .|+......++
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l 222 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHh
Confidence 999999998887653247777888888888899999999999888763 36655555444
No 43
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=2.4e-13 Score=121.40 Aligned_cols=205 Identities=9% Similarity=0.037 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------cCChh-------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 017743 139 EMESVLSRMKSNQCKPDIITFNLLIDSYGK-------RQAFD-------KMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204 (366)
Q Consensus 139 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 204 (366)
++..+|++..... +.+...|..++..+.+ .|+++ +|..+|++....-.+.+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4455565555542 3356667767766664 68876 8999999987632344688899999999999
Q ss_pred CcHhHHHHHHHHHHhCCCCCC-H-HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChhHHH
Q 017743 205 RLQGKAEYVFQKMTAMKYTPS-F-ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA-YCMNGLPTEAD 281 (366)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~ 281 (366)
|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|+...+.... +...|...... +...|++++|.
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHH
Confidence 9999999999999986 343 3 57888888888899999999999999886432 34444333222 34689999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCC-CCCC--hhHHHHHHHHhhcccccC
Q 017743 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG-IVPN--KRFFLEALETFSSSLAGS 348 (366)
Q Consensus 282 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~~~--~~~~~~ll~~~~~~~~~~ 348 (366)
.+|+...+.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...++.....|+..
T Consensus 412 ~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 412 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 9999988764 2368889999999999999999999999998864 2332 235655566555555543
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.69 E-value=4.1e-15 Score=118.69 Aligned_cols=201 Identities=7% Similarity=0.030 Sum_probs=117.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (366)
....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44556666667777777777777777776643 3355666666777777777777777777766553 235566666667
Q ss_pred HHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHH
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 244 (366)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777766642 2355566666666667777777777776666543 3345566666666666677777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 245 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 245 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
|...++.+.+.... +..++..+...|...|++++|...++++.+.
T Consensus 178 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 77666666655432 4566666666666667777776666666654
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.68 E-value=5.6e-15 Score=117.86 Aligned_cols=208 Identities=10% Similarity=0.071 Sum_probs=164.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 017743 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 198 (366)
Q Consensus 119 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 198 (366)
.....+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345667788888999999999999999998864 3478889999999999999999999999998863 34788899999
Q ss_pred HHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 017743 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278 (366)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 278 (366)
..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998865 456788999999999999999999999999887544 7888999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhH
Q 017743 279 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333 (366)
Q Consensus 279 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 333 (366)
+|...++++.+.. +.+..++..+...+...|++++|...++++.+. .|+...
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~ 228 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHML 228 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchHH
Confidence 9999999998865 346889999999999999999999999999884 455443
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.67 E-value=6.9e-14 Score=113.59 Aligned_cols=237 Identities=11% Similarity=0.081 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC--HHH
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN--IVT 88 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 88 (366)
...+......+...|++++|+..|+...+... .+...+..+...+...+ ++++|+..+++... .+..++ ..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~----~~~~A~~~~~~a~~-~~~~~~~~~~~ 76 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELA----KYDLAQKDIETYFS-KVNATKAKSAD 76 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTT----CHHHHHHHHHHHHT-TSCTTTCCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHh----hHHHHHHHHHHHHh-ccCchhHHHHH
Confidence 34555667777788888888888888776531 13335666666665333 37777777777765 211111 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (366)
|..+...+...|++++|.+.|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH
Confidence 6777777777777777777777777653 2355667777777777777777777777766552 2345555555523333
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc---HhHHHHHHHHHHhCC-CCCC------HHHHHHHHHHhhc
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL---QGKAEYVFQKMTAMK-YTPS------FITYECIITMYGY 238 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~ 238 (366)
.+++++|.+.|+++.+.. +.+...+..+...+...++ +++|...+++..+.. ..|+ ..+|..+...+..
T Consensus 155 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 447777777777776642 2235555556666666665 556666666555431 0122 1345555555666
Q ss_pred cCcHHHHHHHHHHHHhCC
Q 017743 239 CDNVSRAREIFDELSKLG 256 (366)
Q Consensus 239 ~~~~~~a~~~~~~~~~~~ 256 (366)
.|++++|...|+...+..
T Consensus 234 ~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 234 NRDKVKADAAWKNILALD 251 (272)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHhcC
Confidence 666666666666665544
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=4.6e-13 Score=108.84 Aligned_cols=207 Identities=13% Similarity=0.023 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCH
Q 017743 66 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQ----ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK----NGMI 137 (366)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~ 137 (366)
+++|+..|++..+ +.+...+..+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++
T Consensus 22 ~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~ 94 (273)
T 1ouv_A 22 FTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNT 94 (273)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCH
Confidence 5666666665554 2344556666666666 777777777777777654 56666777777777 7777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCcHhH
Q 017743 138 KEMESVLSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK----ARLQGK 209 (366)
Q Consensus 138 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~ 209 (366)
++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++
T Consensus 95 ~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~ 168 (273)
T 1ouv_A 95 NKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKK 168 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHH
Confidence 77777777777654 56667777777777 777777777777777654 45566666666766 777888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhc----cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHH
Q 017743 210 AEYVFQKMTAMKYTPSFITYECIITMYGY----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM----NGLPTEAD 281 (366)
Q Consensus 210 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 281 (366)
|...+++..+.+ +...+..+...+.. .+++++|...|+...+.+ +...+..+...|.. .+++++|.
T Consensus 169 A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~ 242 (273)
T 1ouv_A 169 ALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAI 242 (273)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 888887777653 34566667777777 788888888888877764 35667777777777 78888888
Q ss_pred HHHHHhhhCC
Q 017743 282 LLFENSHNMG 291 (366)
Q Consensus 282 ~~~~~~~~~~ 291 (366)
+.|++..+.|
T Consensus 243 ~~~~~a~~~~ 252 (273)
T 1ouv_A 243 ENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcC
Confidence 8888877765
No 48
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=8.4e-13 Score=116.12 Aligned_cols=307 Identities=10% Similarity=0.003 Sum_probs=214.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----C--CCC-ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcC-
Q 017743 9 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-----G--CRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGM- 79 (366)
Q Consensus 9 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~- 79 (366)
.....||.+...+...|++++|++.|++..+. + ..| ...+|+.+-..|...++ +++|...+++....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~----~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGR----LSDVQIYVDKVKHVC 124 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHh
Confidence 34567999999999999999999999987542 1 122 34567777777775544 88888777765431
Q ss_pred ----CCC-CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHHHH
Q 017743 80 ----ERC-KPNIVTYNILLRACAQA--RNVDQVNALFKELHESILAPDIYTYNGVMDA---YGKNGMIKEMESVLSRMKS 149 (366)
Q Consensus 80 ----~~~-~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~ 149 (366)
... .....++..+..++... +++++|...|++..+.. +-+...+..+..+ +...++.++|++.+++..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 111 12345666666555554 56999999999999874 2244555555444 3456778889999998877
Q ss_pred CCCCCCHHHHHHHHHHHh----ccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC
Q 017743 150 NQCKPDIITFNLLIDSYG----KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 225 (366)
Q Consensus 150 ~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 225 (366)
.. +.+...+..+...+. ..+++++|.+.+++.... .+.+...+..+...|...|++++|...+++..+.. +.+
T Consensus 204 l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 280 (472)
T 4g1t_A 204 LN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNN 280 (472)
T ss_dssp HC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred cC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCh
Confidence 63 235556655554443 457789999999998876 34577888999999999999999999999998764 445
Q ss_pred HHHHHHHHHHhhcc-------------------CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 017743 226 FITYECIITMYGYC-------------------DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286 (366)
Q Consensus 226 ~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (366)
..++..+..+|... +..+.|...++...+..+. +...+..+...+...|++++|+..|++
T Consensus 281 ~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~k 359 (472)
T 4g1t_A 281 AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQK 359 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence 66776666555322 3456788888888776544 566788899999999999999999999
Q ss_pred hhhCCCCCCHH--HHHHHHH-HHHhhchHHHHHHHHHHHHh
Q 017743 287 SHNMGVTPDSS--TYKLLYK-AYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 287 ~~~~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~m~~ 324 (366)
..+....|... .+..+.. .....|++++|+..|++..+
T Consensus 360 aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 360 EFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 98865333221 2222322 23467899999999998877
No 49
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=1.1e-13 Score=121.72 Aligned_cols=315 Identities=11% Similarity=0.006 Sum_probs=205.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----C-CCC-ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCC
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-----G-CRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 82 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----g-~~p-~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 82 (366)
...+|+.+...|...|++++|...+++..+. + ..+ ...++...-.++...+ .+.+++|+..|++..+..
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~y~~A~~~~~kal~~~-- 168 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCG--GNQNERAKVCFEKALEKK-- 168 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHc--cccHHHHHHHHHHHHHhC--
Confidence 3567999999999999999999999987642 1 111 2334444333333221 245899999999988643
Q ss_pred CCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCC
Q 017743 83 KPNIVTYNILLRA---CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK----NGMIKEMESVLSRMKSNQCKPD 155 (366)
Q Consensus 83 ~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 155 (366)
|.+...+..+..+ +...++.++|++.+++.++.. +.+..++..+...+.. .++.++|.+.+++..... +.+
T Consensus 169 p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~ 246 (472)
T 4g1t_A 169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGV 246 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSC
T ss_pred CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccH
Confidence 3455556555544 345677788999999988764 3355566665555544 467889999999988764 446
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-------------------CcHhHHHHHHHH
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA-------------------RLQGKAEYVFQK 216 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------------------~~~~~a~~~~~~ 216 (366)
..++..+...|...|++++|...+++..+.. +.+..++..+..+|... +.++.|...++.
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 325 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK 325 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7888999999999999999999999998863 33566666666555322 335677788887
Q ss_pred HHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHhcCChhHHHHHHHHhhhCCC-
Q 017743 217 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS--TLNAMLE-AYCMNGLPTEADLLFENSHNMGV- 292 (366)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~- 292 (366)
..+.. +.+..++..+...+...|++++|...|+...+....+... .+..+.. .....|++++|+..|.+..+...
T Consensus 326 a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~ 404 (472)
T 4g1t_A 326 ADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404 (472)
T ss_dssp HHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred HhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 77654 3445678888999999999999999999998875543221 2223322 23467899999998888765421
Q ss_pred ----------------------CCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCC-CCCChh
Q 017743 293 ----------------------TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG-IVPNKR 332 (366)
Q Consensus 293 ----------------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~ 332 (366)
+.+..+|..+...+...|++++|++.|++.++.| ..|+..
T Consensus 405 ~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 405 SREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 2345678888888999999999999999988764 334443
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=8.3e-15 Score=119.18 Aligned_cols=249 Identities=12% Similarity=-0.049 Sum_probs=189.7
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCC---ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 017743 21 MGKKGQTRLAMWLFSEMRNSGCRP---DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACA 97 (366)
Q Consensus 21 ~~~~~~~~~A~~~~~~~~~~g~~p---~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 97 (366)
....|++++|+..|+.+.+..... +...+..+...+. ..|++++|+..|++..... +.+..+|..+...+.
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYD----SLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLT 88 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH----HcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHH
Confidence 345688999999999998763211 3455666666666 4455999999999988643 557889999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHH
Q 017743 98 QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 177 (366)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 177 (366)
..|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+. .|+.......+..+...|++++|..
T Consensus 89 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999874 346788999999999999999999999999886 3444445555556677899999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC---CHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 017743 178 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP---SFITYECIITMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (366)
.+++..... +++...+ .++..+...++.++|...+.......... +...+..+...+...|++++|...|+...+
T Consensus 166 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 166 VLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 998887753 3344444 36677778888899999999887653111 157888999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 017743 255 LGKDMKVSTLNAMLEAYCMNGLPTEADLLF 284 (366)
Q Consensus 255 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 284 (366)
..+. +. .....++...|++++|++.+
T Consensus 244 ~~p~-~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 244 NNVH-NF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCCT-TC---HHHHHHHHHHHHHHHC----
T ss_pred CCch-hH---HHHHHHHHHHHHHHhhHHHH
Confidence 7532 32 33355677788888887765
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.65 E-value=1.2e-13 Score=117.07 Aligned_cols=247 Identities=7% Similarity=0.014 Sum_probs=186.6
Q ss_pred hHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHH
Q 017743 48 VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN-VDQVNALFKELHESILAPDIYTYNG 126 (366)
Q Consensus 48 ~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 126 (366)
.|..+-..+. ..+++++|+..+++..... +.+..+|+.+..++...|+ +++|+..|+++++.. +-+...|+.
T Consensus 99 a~~~lg~~~~----~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~ 171 (382)
T 2h6f_A 99 VYDYFRAVLQ----RDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHH----HTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHH----HCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 3444444444 3344888888888887643 5567788888888999996 999999999998875 336788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cC
Q 017743 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK-AR 205 (366)
Q Consensus 127 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~ 205 (366)
+..++...|++++|+..|+++.+... -+...|..+..++...|++++|+..|+++++..+ .+...|+.+..++.. .|
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcC
Confidence 88999999999999999999888753 3788888899999999999999999999988643 367888888888888 56
Q ss_pred cHhHH-----HHHHHHHHhCCCCCCHHHHHHHHHHhhccC--cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---
Q 017743 206 LQGKA-----EYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG--- 275 (366)
Q Consensus 206 ~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--- 275 (366)
..++| +..+++.+... +-+...|..+...+...| ++++|.+.+..+ +... .+...+..+...|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p-~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH-SSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-CCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-CCHHHHHHHHHHHHHHhccc
Confidence 65777 47788877764 445778888888888877 688999888887 4433 36778888888888864
Q ss_pred ------ChhHHHHHHHHh-hhCCCCCCHHHHHHHHHHHH
Q 017743 276 ------LPTEADLLFENS-HNMGVTPDSSTYKLLYKAYT 307 (366)
Q Consensus 276 ------~~~~a~~~~~~~-~~~~~~p~~~~~~~l~~~~~ 307 (366)
..++|.++++++ .+.+ +.....|..+...+.
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 258899999998 6643 123455555555443
No 52
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.64 E-value=7.2e-14 Score=119.53 Aligned_cols=297 Identities=10% Similarity=0.002 Sum_probs=208.6
Q ss_pred HHhcCChhHHHHHHHHHHhc--CCCCCh--hhHHHHHHHHhhchHHHHHHHHHH-----------HHHHHHhcCCCCCCC
Q 017743 21 MGKKGQTRLAMWLFSEMRNS--GCRPDP--SVYNALITAHLHTRDKAKALAKAL-----------GYFQKMKGMERCKPN 85 (366)
Q Consensus 21 ~~~~~~~~~A~~~~~~~~~~--g~~p~~--~~~~~ll~~~~~~~~~~~~~~~a~-----------~~~~~~~~~~~~~~~ 85 (366)
+.+.+++++|..+++++.+. .++.|. ..|-.++..-. ..-.+.++.+. +.++.+... +.+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~--~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~---~~~ 96 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRH--NLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK---QAR 96 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH--HHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH---THH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH--HHHHhhcCcccccccccccchhhHHHHHHhc---CCC
Confidence 45789999999999998654 222333 23333333211 11223344444 566665431 112
Q ss_pred HHH------HHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--
Q 017743 86 IVT------YNILLRACAQARNVDQVNALFKELHESI--LA--P-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC-- 152 (366)
Q Consensus 86 ~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-- 152 (366)
... +......+...|++++|...+++..+.- .+ + ...++..+...+...|++++|...+.+..+...
T Consensus 97 ~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 176 (383)
T 3ulq_A 97 LTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH 176 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 122 2235667788999999999999998641 11 1 246788889999999999999999998765311
Q ss_pred ----CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCcHhHHHHHHHHHHhC---
Q 017743 153 ----KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PT----LPTFNSMIINYGKARLQGKAEYVFQKMTAM--- 220 (366)
Q Consensus 153 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 220 (366)
.....++..+...|...|++++|.+.+++..+.... ++ ..++..+...|...|++++|...+++..+.
T Consensus 177 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 177 EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 112457788889999999999999999988753111 11 247888999999999999999999998762
Q ss_pred -CC-CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhCC
Q 017743 221 -KY-TPSFITYECIITMYGYCDNVSRAREIFDELSKL----GKDMKVSTLNAMLEAYCMNGL---PTEADLLFENSHNMG 291 (366)
Q Consensus 221 -~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~ 291 (366)
+. +....++..+...+...|++++|...++...+. +.......+..+...+...|+ +++|+.++++...
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~-- 334 (383)
T 3ulq_A 257 SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML-- 334 (383)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--
T ss_pred hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--
Confidence 32 334678899999999999999999999987653 111122335677888888898 7778888877622
Q ss_pred CCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 292 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.......+..+...|...|++++|...+++..+
T Consensus 335 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 335 YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 122345677889999999999999999998875
No 53
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=2.7e-12 Score=114.55 Aligned_cols=308 Identities=12% Similarity=0.116 Sum_probs=222.5
Q ss_pred CHHHHHHHHHHHHh---------cCChhHHHHHHHHHHhcCCCCCh---hhHHHHHHHHhhc---------hHHHHHHHH
Q 017743 10 DTGIYSKLIAVMGK---------KGQTRLAMWLFSEMRNSGCRPDP---SVYNALITAHLHT---------RDKAKALAK 68 (366)
Q Consensus 10 ~~~~~~~li~~~~~---------~~~~~~A~~~~~~~~~~g~~p~~---~~~~~ll~~~~~~---------~~~~~~~~~ 68 (366)
+...|...+....+ .|++++|..+|+..++. |.. ..|.......-.. ....+.+..
T Consensus 120 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~ 196 (530)
T 2ooe_A 120 SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMN 196 (530)
T ss_dssp CHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHH
Confidence 45677777776655 78999999999999873 432 3333222210000 012355777
Q ss_pred HHHHHHHH------hcC--CCCCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCChhhH
Q 017743 69 ALGYFQKM------KGM--ERCKPN--------IVTYNILLRACAQA----RNV----DQVNALFKELHESILAPDIYTY 124 (366)
Q Consensus 69 a~~~~~~~------~~~--~~~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~ 124 (366)
|..++... .+. ..++|+ ...|...+...... ++. ..+..+|++.+... +.+...|
T Consensus 197 A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w 275 (530)
T 2ooe_A 197 ARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIW 275 (530)
T ss_dssp HHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHH
Confidence 77766652 211 012444 24566655444332 222 47788999988863 4467888
Q ss_pred HHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC-
Q 017743 125 NGVMDAYGK-------NGMIK-------EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP- 189 (366)
Q Consensus 125 ~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 189 (366)
..+...+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++++. .|
T Consensus 276 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~ 353 (530)
T 2ooe_A 276 YEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDI 353 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--ccc
Confidence 888888775 78887 89999999986323446889999999999999999999999999985 34
Q ss_pred CH-HHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 017743 190 TL-PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM-YGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 267 (366)
Q Consensus 190 ~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 267 (366)
+. ..|...+..+.+.|+.++|..+|++..+.. +.+...|...... +...|+.++|..+|+...+..+. +...|..+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~ 431 (530)
T 2ooe_A 354 DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAY 431 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHH
Confidence 33 588888888889999999999999999863 2233333332222 33589999999999999887543 68899999
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCC-CC--CHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 268 LEAYCMNGLPTEADLLFENSHNMGV-TP--DSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
+..+.+.|+.++|..+|++....+. .| ....|...+......|+.+.+..+++++.+.
T Consensus 432 ~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 432 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999988642 22 2458888888888999999999999998863
No 54
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=9.2e-13 Score=109.02 Aligned_cols=218 Identities=14% Similarity=0.125 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 017743 103 DQVNALFKELHESILAPDIYTYNGVMDAYG-------KNGMI-------KEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168 (366)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (366)
++|..+|++++... +.+...|..+...+. +.|++ ++|..+|++..+.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777653 335666666666654 34665 7888888887763122355677777888888
Q ss_pred cCChhHHHHHHHHHHhcCCCC-CHH-HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhh-ccCcHHHH
Q 017743 169 RQAFDKMEQVFKSLMHSKEKP-TLP-TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG-YCDNVSRA 245 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~-~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 245 (366)
.|++++|..+|++.+.. .| +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|+.++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888774 33 233 67777777778888888888888887764 334444544333322 25888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-CCC--CHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 017743 246 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG-VTP--DSSTYKLLYKAYTKANMKELVQKLLKRM 322 (366)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~m 322 (366)
..+|+...+..+. +...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888776443 67788888888888888888888888888752 344 4667778888888888888888888888
Q ss_pred HhC
Q 017743 323 EQN 325 (366)
Q Consensus 323 ~~~ 325 (366)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 55
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.63 E-value=2.1e-12 Score=121.51 Aligned_cols=276 Identities=13% Similarity=0.102 Sum_probs=213.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 017743 14 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 93 (366)
Q Consensus 14 ~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 93 (366)
..-+...+...|.+++|..+|++.. -.....+.++. ..+.+++|.++.++.. +..+|..+.
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie-------~i~nldrAiE~Aervn-------~p~vWsqLA 1112 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE-------HIGNLDRAYEFAERCN-------EPAVWSQLA 1112 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH-------HHhhHHHHHHHHHhcC-------CHHHHHHHH
Confidence 3446777888999999999999853 12222344433 4456999999988653 577899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChh
Q 017743 94 RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173 (366)
Q Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 173 (366)
.++...|++++|...|.+. -|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|.+.++++
T Consensus 1113 KAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A 1113 KAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLA 1184 (1630)
T ss_pred HHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHH
Confidence 9999999999999999663 377889999999999999999999999887764 33333445889999999988
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 017743 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253 (366)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 253 (366)
+..... . .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.++...
T Consensus 1185 ele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1185 ELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred HHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 644332 2 346677778999999999999999999985 379999999999999999999998762
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhH
Q 017743 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333 (366)
Q Consensus 254 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 333 (366)
+..+|..+-.+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++...... +-....
T Consensus 1249 ------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gm 1316 (1630)
T 1xi4_A 1249 ------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 1316 (1630)
T ss_pred ------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHH
Confidence 578899999999999999998876654 33467778899999999999999999997776433 223345
Q ss_pred HHHHHHHhhcc
Q 017743 334 FLEALETFSSS 344 (366)
Q Consensus 334 ~~~ll~~~~~~ 344 (366)
|..+-..+++.
T Consensus 1317 ftELaiLyaKy 1327 (1630)
T 1xi4_A 1317 FTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHHHhC
Confidence 55555555444
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.61 E-value=1.3e-13 Score=120.96 Aligned_cols=215 Identities=9% Similarity=-0.032 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHH
Q 017743 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMI-KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFK 180 (366)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 180 (366)
++++.+.++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444433321 22444444555555555555 55555555554432 1234455555555555555555555555
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhc---------CcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc--------CcHH
Q 017743 181 SLMHSKEKPTLPTFNSMIINYGKA---------RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--------DNVS 243 (366)
Q Consensus 181 ~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 243 (366)
+..+. .|+...+..+...+... |++++|...+++..+.. +.+...|..+..++... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 55543 23345555555555555 55666666665555543 33355555555555555 6666
Q ss_pred HHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHH
Q 017743 244 RAREIFDELSKLGKD--MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321 (366)
Q Consensus 244 ~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (366)
+|...|+...+..+. -+...|..+..+|...|++++|.+.|++..+... .+...+..+...+...|++++|+..+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666666666665330 2566666667777777777777777776665542 2455666666666777777766665444
Q ss_pred H
Q 017743 322 M 322 (366)
Q Consensus 322 m 322 (366)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=3.5e-13 Score=102.58 Aligned_cols=166 Identities=14% Similarity=0.122 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017743 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234 (366)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 234 (366)
+..+|..+...|...|++++|++.|++.++.. +.+..++..+...+.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45556666666666666666666666666542 2245566666666666666666666666665543 334455555666
Q ss_pred HhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHH
Q 017743 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 314 (366)
Q Consensus 235 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 314 (366)
.+...++++.+...+....+..+. +...+..+...+...|++++|++.|++..+... .+..+|..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 666666666666666666655433 556666666666677777777777766666542 256666666667777777777
Q ss_pred HHHHHHHHHh
Q 017743 315 VQKLLKRMEQ 324 (366)
Q Consensus 315 a~~~~~~m~~ 324 (366)
|+..|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777766665
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=1.2e-13 Score=121.11 Aligned_cols=218 Identities=10% Similarity=0.016 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV-DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 140 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 140 (366)
..+.+++++..++..... .+.+...+..+...+...|++ ++|.+.|++.++.. +.+..++..+..+|...|++++|
T Consensus 80 ~~~~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A 156 (474)
T 4abn_A 80 VQEEMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSA 156 (474)
T ss_dssp HHHHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 344588888888887753 255788999999999999999 99999999999875 33678999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcc---------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-------
Q 017743 141 ESVLSRMKSNQCKPDIITFNLLIDSYGKR---------QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA------- 204 (366)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------- 204 (366)
.+.|++..+. .|+...+..+...+... |++++|.+.|++..+.. +.+...|..+..+|...
T Consensus 157 ~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~ 233 (474)
T 4abn_A 157 HTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQN 233 (474)
T ss_dssp HHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccc
Confidence 9999999987 46678899999999999 99999999999998863 34688999999999998
Q ss_pred -CcHhHHHHHHHHHHhCCCC---CCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 017743 205 -RLQGKAEYVFQKMTAMKYT---PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280 (366)
Q Consensus 205 -~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 280 (366)
|++++|...|++..+.. + .+...|..+..++...|++++|...|+...+..+. +...+..+...+...|++++|
T Consensus 234 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 234 PKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999864 3 47889999999999999999999999999987655 678899999999999999999
Q ss_pred HHHHHHh
Q 017743 281 DLLFENS 287 (366)
Q Consensus 281 ~~~~~~~ 287 (366)
.+.+.++
T Consensus 312 i~~~~~~ 318 (474)
T 4abn_A 312 LESKGKT 318 (474)
T ss_dssp HHHTTTC
T ss_pred HHHhccc
Confidence 8766544
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.60 E-value=1.1e-13 Score=119.22 Aligned_cols=299 Identities=12% Similarity=0.030 Sum_probs=205.7
Q ss_pred cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh-----hhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcC---
Q 017743 8 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDP-----SVYNALITAHLHTRDKAKALAKALGYFQKMKGM--- 79 (366)
Q Consensus 8 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~-----~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~--- 79 (366)
.+....+......+...|++++|...|+...+.+ |+. ..+..+...+... |++++|+..+++....
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~ 79 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYL----HDYAKALEYHHHDLTLART 79 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHh
Confidence 4566677888899999999999999999998863 332 3455565666644 4478888877765431
Q ss_pred CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCC-----------------
Q 017743 80 ERCK-PNIVTYNILLRACAQARNVDQVNALFKELHESILA-PD----IYTYNGVMDAYGKNGM----------------- 136 (366)
Q Consensus 80 ~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~----------------- 136 (366)
.+.. ....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+
T Consensus 80 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a 159 (406)
T 3sf4_A 80 IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence 1111 23557888889999999999999999887764210 11 3467788888888999
Q ss_pred ---HHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHh
Q 017743 137 ---IKEMESVLSRMKSN----QCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPT----LPTFNSMIINYGK 203 (366)
Q Consensus 137 ---~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~ 203 (366)
+++|.+.+.+..+. +.. ....++..+...+...|++++|...+++...... .++ ..++..+...+..
T Consensus 160 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 239 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 239 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 88888888876432 111 1234677788888889999999998888765311 112 2367778888888
Q ss_pred cCcHhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHh
Q 017743 204 ARLQGKAEYVFQKMTAM----KYTPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKD-----MKVSTLNAMLEAYCM 273 (366)
Q Consensus 204 ~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~ 273 (366)
.|++++|...+++.... +..+. ..++..+...+...|++++|...++...+.... ....++..+...|..
T Consensus 240 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 319 (406)
T 3sf4_A 240 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA 319 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 89999998888877643 11111 456778888888889999998888877653111 114567778888888
Q ss_pred cCChhHHHHHHHHhhhC----CCC-CCHHHHHHHHHHHHhhchH
Q 017743 274 NGLPTEADLLFENSHNM----GVT-PDSSTYKLLYKAYTKANMK 312 (366)
Q Consensus 274 ~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~~~~ 312 (366)
.|++++|...+++..+. +.. ....++..+...+...|+.
T Consensus 320 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 320 LGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 88988888888876543 111 1234556666666666654
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.59 E-value=7.2e-14 Score=120.64 Aligned_cols=132 Identities=10% Similarity=-0.064 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC-----CCHH
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKY-TPS----FITYECIITMYGYCDNVSRAREIFDELSKLGKD-----MKVS 262 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~ 262 (366)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...++...+.... ....
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 444455555555555555555555443210 001 124555566666666666666666555432110 0134
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCC----C-CCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 263 TLNAMLEAYCMNGLPTEADLLFENSHNMG----V-TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
++..+...+...|++++|...+++..... - .....++..+...+...|++++|..++++..+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55666666666666666666666654321 0 01134566666667777777777777776665
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.58 E-value=6.4e-13 Score=101.14 Aligned_cols=166 Identities=11% Similarity=0.066 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (366)
+...|..+...+...|++++|.+.|++.++.. +-+..++..+..++.+.|++++|...+........ .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 34455555555555555555555555555543 22344455555555555555555555555444321 23344444444
Q ss_pred HHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHH
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 244 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 244 (366)
.+...++++.+...+.+.... .+.+...+..+...+.+.|++++|+..|++..+.. +.+..+|..+..++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 444455555555555444443 12234444444444444444444444444444332 2233444444444444444444
Q ss_pred HHHHHHHHHh
Q 017743 245 AREIFDELSK 254 (366)
Q Consensus 245 a~~~~~~~~~ 254 (366)
|...|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 62
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=3e-14 Score=117.99 Aligned_cols=240 Identities=16% Similarity=0.127 Sum_probs=168.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------
Q 017743 84 PNIVTYNILLRACAQARNVDQVNALFKELHES-------ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN------ 150 (366)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------ 150 (366)
.+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34567888889999999999999999988873 22334566788888999999999999999887653
Q ss_pred C-CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhc------CCCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC--
Q 017743 151 Q-CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS------KEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAM-- 220 (366)
Q Consensus 151 ~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-- 220 (366)
+ .+....++..+...+...|++++|...+++..+. +..| ....+..+...+...|++++|...+++..+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 1234567788888999999999999999988764 2222 3456778888899999999999999988764
Q ss_pred ----CCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC-------CCC-------CHHHHHHHHHHHHhcCChhHHH
Q 017743 221 ----KYTP-SFITYECIITMYGYCDNVSRAREIFDELSKLG-------KDM-------KVSTLNAMLEAYCMNGLPTEAD 281 (366)
Q Consensus 221 ----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~-------~~~~~~~li~~~~~~g~~~~a~ 281 (366)
+..| ...++..+..++...|++++|...++.+.+.. ..+ ....+..+...+...+.+.++.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 2123 34578888999999999999999998887531 111 1122333333444556666667
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 282 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
..+....... +.+..++..+...|...|++++|.+++++..+
T Consensus 265 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 265 GWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777665542 23567888999999999999999999998875
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=1.2e-13 Score=118.98 Aligned_cols=294 Identities=9% Similarity=-0.026 Sum_probs=212.5
Q ss_pred hHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC
Q 017743 48 VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN----IVTYNILLRACAQARNVDQVNALFKELHES----ILAP 119 (366)
Q Consensus 48 ~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 119 (366)
.+...-..+. ..|++++|+..|++..... +.+ ..++..+...+...|++++|...+++.... +..|
T Consensus 11 ~l~~~g~~~~----~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 11 ELALEGERLC----KSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp HHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHH----HhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3334444444 4455999999999987642 223 357888999999999999999999987653 1111
Q ss_pred -ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHhccCC--------------------hh
Q 017743 120 -DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC-----KPDIITFNLLIDSYGKRQA--------------------FD 173 (366)
Q Consensus 120 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~ 173 (366)
...++..+...+...|++++|...+++..+... .....++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 245677888899999999999999998765311 1114477888889999999 99
Q ss_pred HHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHhhccCcHH
Q 017743 174 KMEQVFKSLMHS----KEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY-TPS----FITYECIITMYGYCDNVS 243 (366)
Q Consensus 174 ~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~ 243 (366)
+|.+.+++.... +..+ ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999887542 1111 234678888899999999999999998775310 111 347888899999999999
Q ss_pred HHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCC----HHHHHHHHHHHHhhchHH
Q 017743 244 RAREIFDELSKLGKD-MK----VSTLNAMLEAYCMNGLPTEADLLFENSHNMGV-TPD----SSTYKLLYKAYTKANMKE 313 (366)
Q Consensus 244 ~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~ 313 (366)
+|...++...+.... .+ ..++..+...|...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999987653111 11 56788899999999999999999998765311 112 567888999999999999
Q ss_pred HHHHHHHHHHhC----CCCCC-hhHHHHHHHHhhccccc
Q 017743 314 LVQKLLKRMEQN----GIVPN-KRFFLEALETFSSSLAG 347 (366)
Q Consensus 314 ~a~~~~~~m~~~----g~~~~-~~~~~~ll~~~~~~~~~ 347 (366)
+|...+++..+. |-.+. ..++..+-..+...|..
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 999999987653 22222 33455555555555544
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=6.9e-14 Score=120.75 Aligned_cols=274 Identities=9% Similarity=-0.032 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChh-----hHHHHHHHHhhchHHHHHHHHHHHHHHHHhcC---CC-
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPS-----VYNALITAHLHTRDKAKALAKALGYFQKMKGM---ER- 81 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~-----~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~---~~- 81 (366)
...+..+...+...|++++|...|+.+.+. .|+.. .+..+...+. ..|++++|+..+++.... .+
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~~~~~~ 121 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYF----YLGDYNKAMQYHKHDLTLAKSMND 121 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHHccC
Confidence 344556778889999999999999999886 56543 4455555555 556699999999887642 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcCC-----------------HHH
Q 017743 82 CKPNIVTYNILLRACAQARNVDQVNALFKELHESI-----LAPDIYTYNGVMDAYGKNGM-----------------IKE 139 (366)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~-----------------~~~ 139 (366)
.+....++..+...|...|++++|...+++..+.. .+....++..+...+...|+ +++
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence 12345678888999999999999999999887641 11234577888889999999 999
Q ss_pred HHHHHHHHHHC----CC-CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCcHhH
Q 017743 140 MESVLSRMKSN----QC-KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PT----LPTFNSMIINYGKARLQGK 209 (366)
Q Consensus 140 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~ 209 (366)
|.+.+++..+. +. .....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++
T Consensus 202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 99999886542 11 112457778888999999999999999998764211 12 2367888889999999999
Q ss_pred HHHHHHHHHhCCC---C--CCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCChhH
Q 017743 210 AEYVFQKMTAMKY---T--PSFITYECIITMYGYCDNVSRAREIFDELSKLGK-----DMKVSTLNAMLEAYCMNGLPTE 279 (366)
Q Consensus 210 a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~ 279 (366)
|...+++...... . ....++..+...+...|++++|...++...+... .....++..+...|...|++++
T Consensus 282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 361 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHER 361 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHH
Confidence 9999998875421 1 1146788888999999999999999998876421 1124577888999999999999
Q ss_pred HHHHHHHhhhC
Q 017743 280 ADLLFENSHNM 290 (366)
Q Consensus 280 a~~~~~~~~~~ 290 (366)
|...+++..+.
T Consensus 362 A~~~~~~al~~ 372 (411)
T 4a1s_A 362 ALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988774
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=3.5e-12 Score=105.52 Aligned_cols=218 Identities=8% Similarity=0.007 Sum_probs=159.9
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 017743 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQ-------ARNV-------DQVNALFKELHESILAPDIYTYNGVMDAYG 132 (366)
Q Consensus 67 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 132 (366)
++|...|++..... +.+...|..++..+.. .|++ ++|..+|++.++.-.+-+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 56666666665422 4566677777766653 4775 888888888887311334567888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCcHhH
Q 017743 133 KNGMIKEMESVLSRMKSNQCKPD-II-TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG-KARLQGK 209 (366)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~ 209 (366)
+.|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|..+|++..+... ++...|........ ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 889999999999988875 333 33 788888888888999999999998887533 34444543333322 3688999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 017743 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG-KDM--KVSTLNAMLEAYCMNGLPTEADLLFEN 286 (366)
Q Consensus 210 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (366)
|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++......|+.+.|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998887753 3457788888888888899999999999988863 343 467788888888888999999999888
Q ss_pred hhhC
Q 017743 287 SHNM 290 (366)
Q Consensus 287 ~~~~ 290 (366)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 66
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.55 E-value=3.2e-12 Score=109.03 Aligned_cols=312 Identities=10% Similarity=0.003 Sum_probs=214.3
Q ss_pred cccCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHhc--CCCCCh--hhHHHHHHHHhhchHHHHHHH---------HHH
Q 017743 6 WYIADTGIYSKLIAVM--GKKGQTRLAMWLFSEMRNS--GCRPDP--SVYNALITAHLHTRDKAKALA---------KAL 70 (366)
Q Consensus 6 ~~~~~~~~~~~li~~~--~~~~~~~~A~~~~~~~~~~--g~~p~~--~~~~~ll~~~~~~~~~~~~~~---------~a~ 70 (366)
...|+..+-+.+-..| .+.+++++|.++++++.+. .++.|. ..|-.++..-... -.+.+. ...
T Consensus 5 ~~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~--~~~~~~~~~~~~~~~~~~ 82 (378)
T 3q15_A 5 QAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQL--MLDYLEPGKTYGNRPTVT 82 (378)
T ss_dssp -CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHH--HHHTCCC--------CHH
T ss_pred ccccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH--HHhhcCcccccccccchH
Confidence 3467777777787787 8999999999999998653 222232 2233333221100 011111 122
Q ss_pred HHHHHHhcCCCCCC-C-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCCHHHH
Q 017743 71 GYFQKMKGMERCKP-N-I---VTYNILLRACAQARNVDQVNALFKELHESIL-APD----IYTYNGVMDAYGKNGMIKEM 140 (366)
Q Consensus 71 ~~~~~~~~~~~~~~-~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a 140 (366)
+.++.+.... .+ + . ..+......+...|++++|...|++..+... .++ ..++..+...|...|++++|
T Consensus 83 ~~l~~i~~~~--~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A 160 (378)
T 3q15_A 83 ELLETIETPQ--KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVS 160 (378)
T ss_dssp HHHHHHHGGG--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhccC--CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHH
Confidence 4555544211 11 1 1 1233445567789999999999999886421 122 45678888999999999999
Q ss_pred HHHHHHHHHC----CC-C-CCHHHHHHHHHHHhccCChhHHHHHHHHHHhcC----CC-CCHHHHHHHHHHHHhcCcHhH
Q 017743 141 ESVLSRMKSN----QC-K-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK----EK-PTLPTFNSMIINYGKARLQGK 209 (366)
Q Consensus 141 ~~~~~~~~~~----~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~~~~~~ 209 (366)
...+.+..+. +- . ....++..+...|...|++++|.+.|++..+.. .. ....++..+...|...|++++
T Consensus 161 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~ 240 (378)
T 3q15_A 161 MYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQM 240 (378)
T ss_dssp HHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 9999987643 11 1 125577888999999999999999999886531 11 123567788899999999999
Q ss_pred HHHHHHHHHh-----CCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCC---h
Q 017743 210 AEYVFQKMTA-----MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK----DMKVSTLNAMLEAYCMNGL---P 277 (366)
Q Consensus 210 a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~---~ 277 (366)
|...+++..+ .. +....++..+...+.+.|++++|...++...+... ......+..+...+...++ +
T Consensus 241 A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~ 319 (378)
T 3q15_A 241 AVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319 (378)
T ss_dssp HHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999999886 43 33367888999999999999999999999876421 2223455666667777788 7
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 278 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.+|+..+++... .......+..+...|...|++++|...|++..+
T Consensus 320 ~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 320 HDLLSYFEKKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778877776321 122245667888999999999999999998865
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=3.6e-13 Score=112.58 Aligned_cols=238 Identities=9% Similarity=-0.004 Sum_probs=138.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 017743 88 TYNILLRACAQARNVDQVNALFKELHES----ILA-PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC-KPD----II 157 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~ 157 (366)
.+..+...+...|++++|.+.+++..+. +.. ....++..+...+...|++++|...+.+..+... .++ ..
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 3444444555555555555555544322 101 1123444455555555555555555555432100 001 22
Q ss_pred HHHHHHHHHhccCC--------------------hhHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCcHhHHHH
Q 017743 158 TFNLLIDSYGKRQA--------------------FDKMEQVFKSLMHS----KEK-PTLPTFNSMIINYGKARLQGKAEY 212 (366)
Q Consensus 158 ~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~ 212 (366)
++..+...+...|+ +++|.+.+++.... +.. ....++..+...+...|++++|..
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45555555666666 66666666554321 111 113356666677777777777777
Q ss_pred HHHHHHhC----CCC-CCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCChhHHHH
Q 017743 213 VFQKMTAM----KYT-PSFITYECIITMYGYCDNVSRAREIFDELSKLGKD-M----KVSTLNAMLEAYCMNGLPTEADL 282 (366)
Q Consensus 213 ~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~ 282 (366)
.+++..+. +.. ....++..+...+...|++++|...++...+.... . ...++..+...+...|++++|..
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 77766543 101 11236777777888888888888888776543111 0 14567778888888899999988
Q ss_pred HHHHhhhCC----C-CCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 283 LFENSHNMG----V-TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 283 ~~~~~~~~~----~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
.+++..+.. - .....++..+...+...|++++|...+++..+.
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 888776431 0 111446778888889999999999999888763
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=3.9e-13 Score=112.41 Aligned_cols=274 Identities=12% Similarity=0.023 Sum_probs=201.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcC---CC-
Q 017743 11 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-----PSVYNALITAHLHTRDKAKALAKALGYFQKMKGM---ER- 81 (366)
Q Consensus 11 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~-----~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~---~~- 81 (366)
...+......+...|++++|...|+++.+.. |+ ...+..+...+... |++++|+..+++.... .+
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~ 78 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYL----HDYAKALEYHHHDLTLARTIGD 78 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHhhcccc
Confidence 3455667788899999999999999998863 43 24555666666644 4488888887765431 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCC--------------------
Q 017743 82 CKPNIVTYNILLRACAQARNVDQVNALFKELHESIL-APD----IYTYNGVMDAYGKNGM-------------------- 136 (366)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~-------------------- 136 (366)
.+....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 122356788899999999999999999998876421 112 3377888889999999
Q ss_pred HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCc
Q 017743 137 IKEMESVLSRMKSN----QC-KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPT----LPTFNSMIINYGKARL 206 (366)
Q Consensus 137 ~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~ 206 (366)
+++|.+.+++.... +. .....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 99999998876532 11 11245677888899999999999999998865311 111 3377888889999999
Q ss_pred HhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCC
Q 017743 207 QGKAEYVFQKMTAM----KYTP-SFITYECIITMYGYCDNVSRAREIFDELSKLGK-----DMKVSTLNAMLEAYCMNGL 276 (366)
Q Consensus 207 ~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~ 276 (366)
+++|...+++.... +..+ ...++..+...+...|++++|...++...+... .....++..+...|...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999987643 1111 145778888999999999999999998765311 1124577889999999999
Q ss_pred hhHHHHHHHHhhhC
Q 017743 277 PTEADLLFENSHNM 290 (366)
Q Consensus 277 ~~~a~~~~~~~~~~ 290 (366)
+++|...+++..+.
T Consensus 319 ~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 319 HDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999998764
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=1.6e-13 Score=113.56 Aligned_cols=171 Identities=16% Similarity=0.125 Sum_probs=104.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-------CCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcC---
Q 017743 10 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-------GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGM--- 79 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-------g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~--- 79 (366)
+..++..+...+...|++++|..+|+++.+. ........+..+...+... |++++|+..+++....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ----NKYKDAANLLNDALAIREK 101 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHH
Confidence 4667888999999999999999999998763 1111233444555555533 3366666666665432
Q ss_pred ---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017743 80 ---ERCKPNIVTYNILLRACAQARNVDQVNALFKELHES------IL-APDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 149 (366)
Q Consensus 80 ---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 149 (366)
...+....++..+...+...|++++|...++++.+. +. +....++..+...+...|++++|.+.++++.+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111223456667777777777777777777776653 11 11234455666666777777777777766654
Q ss_pred C------CCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 017743 150 N------QCKP-DIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184 (366)
Q Consensus 150 ~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (366)
. +..| ...++..+...+...|++++|.+.++++..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 1111 234555666666666666666666666654
No 70
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.49 E-value=1.1e-10 Score=110.25 Aligned_cols=251 Identities=14% Similarity=0.154 Sum_probs=189.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCH
Q 017743 23 KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102 (366)
Q Consensus 23 ~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 102 (366)
..+++++|.++.++. -+..+|..+-.++. ..|++++|++.|.+. .|...|..++.++.+.|++
T Consensus 1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql----~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGky 1150 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQL----QKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNW 1150 (1630)
T ss_pred HHhhHHHHHHHHHhc------CCHHHHHHHHHHHH----hCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCH
Confidence 556677777776644 24677888877777 455599999999663 4777888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 017743 103 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182 (366)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 182 (366)
++|.+.+...++.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|...
T Consensus 1151 EEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1151 EELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 99999999887764 34444456899999999988644443 2 356677888999999999999999999985
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHH
Q 017743 183 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 262 (366)
Q Consensus 183 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 262 (366)
..|..+..++.+.|+++.|.+.+++. .+..+|..+..+|...|++..|......+ ..++.
T Consensus 1222 ---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~d 1281 (1630)
T 1xi4_A 1222 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHAD 1281 (1630)
T ss_pred ---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHH
Confidence 37899999999999999999999876 34578888888999999998888776542 23677
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh--hchHHHHHHHHH
Q 017743 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK--ANMKELVQKLLK 320 (366)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~ 320 (366)
.+..++..|.+.|.+++|+.+++...... +-....|.-+...+++ -++..++.++|.
T Consensus 1282 eLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1282 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 78899999999999999999998776544 2234455555555544 233444444433
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.48 E-value=2.4e-11 Score=95.84 Aligned_cols=210 Identities=9% Similarity=0.026 Sum_probs=155.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 017743 119 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 198 (366)
Q Consensus 119 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 198 (366)
.|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|++.|++..+..+ .+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 456788888889999999999999999988875436777777788999999999999999999988532 3567888888
Q ss_pred HHHHhcCcHhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 017743 199 INYGKARLQGKAEYVFQKMTAMKYTPSF-------ITYECIITMYGYCDNVSRAREIFDELSKLGKDM-KVSTLNAMLEA 270 (366)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~ 270 (366)
..+...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|+...+.++.. +...+..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 99999999999999999988764 3334 457778888888999999999999988863210 24667777777
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 017743 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALET 340 (366)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 340 (366)
|...| ...++++...+ ..+...|.... ....+.+++|...+++..+ +.|+......++..
T Consensus 163 ~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHHH
Confidence 76543 34455555543 23445554433 3456778999999999988 45766555554443
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.47 E-value=9.1e-12 Score=94.52 Aligned_cols=164 Identities=10% Similarity=0.024 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 017743 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236 (366)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (366)
..+..+...+...|++++|...++++... .+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34455556666666677776666666553 22345666666666667777777777777666543 34456666677777
Q ss_pred hccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHH
Q 017743 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQ 316 (366)
Q Consensus 237 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 316 (366)
...|++++|...++.+.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777777665433 56667777777777777777777777776654 335677777777777778888887
Q ss_pred HHHHHHHh
Q 017743 317 KLLKRMEQ 324 (366)
Q Consensus 317 ~~~~~m~~ 324 (366)
..+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777665
No 73
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.46 E-value=1.3e-10 Score=101.33 Aligned_cols=192 Identities=9% Similarity=-0.001 Sum_probs=129.3
Q ss_pred ChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CChhHHHHHHHHHHhcCCCCCHH
Q 017743 120 DIYTYNGVMDAYGKNG---MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR----QAFDKMEQVFKSLMHSKEKPTLP 192 (366)
Q Consensus 120 ~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~ 192 (366)
+...+..+...|...| +.++|++.|++..+.|. ++...+..+...|... +++++|.+.|++.. . -+..
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~ 249 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPA 249 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHH
Confidence 4447777777777788 77888888888877763 3555555666666554 67888888888876 2 2444
Q ss_pred HHHHHHHH-H--HhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC-----cHHHHHHHHHHHHhCCCCCCHHHH
Q 017743 193 TFNSMIIN-Y--GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD-----NVSRAREIFDELSKLGKDMKVSTL 264 (366)
Q Consensus 193 ~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~ 264 (366)
.+..+... + ...+++++|..+|++..+.| +...+..|...|. .| ++++|...|+... .| ++..+
T Consensus 250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~ 321 (452)
T 3e4b_A 250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAAD 321 (452)
T ss_dssp HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHH
Confidence 55555555 3 45678888888888887765 4556666666665 44 7888888888777 33 56667
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----hchHHHHHHHHHHHHhCCC
Q 017743 265 NAMLEAYCM----NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK----ANMKELVQKLLKRMEQNGI 327 (366)
Q Consensus 265 ~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~ 327 (366)
..|...|.. ..++++|...|++..+.|. ......|...|.. ..+.++|..+|+...+.|.
T Consensus 322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 322 YYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 777766665 3378888888888877663 3344455555543 3477788888887777664
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.45 E-value=1.1e-10 Score=99.25 Aligned_cols=273 Identities=11% Similarity=0.007 Sum_probs=170.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChh----hHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCC---
Q 017743 13 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPS----VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN--- 85 (366)
Q Consensus 13 ~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~----~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 85 (366)
.+......+...|++++|...++.........+.. .++.+-..+. ..|++++|...+++......-.++
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~ 91 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH----CKGELTRSLALMQQTEQMARQHDVWHY 91 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence 34445566778899999999999987653222222 2233333333 445577888777765432111122
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----
Q 017743 86 -IVTYNILLRACAQARNVDQVNALFKELHESI----LA--P-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK---- 153 (366)
Q Consensus 86 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---- 153 (366)
..++..+...+...|++++|...+++..+.. .. | ....+..+...+...|++++|...+++.......
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 171 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 171 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence 2335667778888899999998888876532 11 2 2344566777888889999998888887653221
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC--HHHHH----HHHHHHHhcCcHhHHHHHHHHHHhCCCCC---
Q 017743 154 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT--LPTFN----SMIINYGKARLQGKAEYVFQKMTAMKYTP--- 224 (366)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~~--- 224 (366)
....++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...++........+
T Consensus 172 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 251 (373)
T 1hz4_A 172 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 251 (373)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh
Confidence 1235566777778888888888888888765311111 11111 22334667888888888888776543211
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 225 SFITYECIITMYGYCDNVSRAREIFDELSKL----GKDMKV-STLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
....+..+...+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++...
T Consensus 252 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1234566677777888888888888776542 211122 2555666777778888888887777654
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.45 E-value=1.6e-11 Score=93.17 Aligned_cols=163 Identities=17% Similarity=0.080 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 017743 88 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (366)
.+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444555555555555555555544332 2234444444555555555555555555544432 223444444444444
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHH
Q 017743 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 247 (366)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 247 (366)
.. |++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 88 ~~-----------------------------------~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 88 QV-----------------------------------QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp HH-----------------------------------TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred Hh-----------------------------------cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHH
Confidence 44 44444444444444332 2234444445555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 248 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
.++.+.+.... +...+..+...+...|++++|...+++..+
T Consensus 132 ~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 132 SFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555444322 344555555555555555555555555443
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.44 E-value=6.3e-11 Score=93.37 Aligned_cols=208 Identities=7% Similarity=-0.040 Sum_probs=155.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (366)
+.|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|++.+++..+... .+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHH
Confidence 3456788888899999999999999999999876446778888888999999999999999999988743 367788889
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTL-------PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP--SFITYECII 233 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 233 (366)
..++...|++++|...+++..+..+ .+. ..|..+...+...|++++|...+++..+.. +. +...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 9999999999999999999988532 344 457778888889999999999999998863 22 356777777
Q ss_pred HHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHH
Q 017743 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302 (366)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 302 (366)
.++...| ..+++.+...+.. +...|..... ...+.+++|...+++..+..+. +..+...+
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l 220 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLASS-NKEKYASEKA--KADAAFKKAVDYLGEAVTLSPN-RTEIKQMQ 220 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcccC-CHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 7775444 3445555555322 4445544433 3456789999999998886422 44444433
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.44 E-value=7.2e-12 Score=114.47 Aligned_cols=165 Identities=9% Similarity=0.013 Sum_probs=98.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 017743 121 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 200 (366)
Q Consensus 121 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 200 (366)
..+++.+..++.+.|++++|++.|++..+.. +-+...+..+..+|.+.|++++|++.|++.++.. +.+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4556666666666666666666666666542 2245566666666666666666666666665542 2245566666666
Q ss_pred HHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 017743 201 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 280 (366)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 280 (366)
+...|++++|.+.|++..+.. +-+...|..+..++...|++++|...|++..+..+. +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 666666666666666665543 233556666666666666666666666666655433 455566666666666666666
Q ss_pred HHHHHHhhh
Q 017743 281 DLLFENSHN 289 (366)
Q Consensus 281 ~~~~~~~~~ 289 (366)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555543
No 78
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.43 E-value=1.9e-11 Score=106.63 Aligned_cols=282 Identities=15% Similarity=0.130 Sum_probs=176.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 017743 17 LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 96 (366)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (366)
+...+.+.|++++|.++|+...+.|. ++ .+..+-..+...+ ...+.++|+..|++..+ . +...+..+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~-~~--A~~~Lg~~y~~~g-~~~d~~~A~~~~~~A~~----~-~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY-SE--AQVGLADIQVGTR-DPAQIKQAEATYRAAAD----T-SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-CT--GGGTCC----------------------------------CHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHccC-CCCCHHHHHHHHHHHHh----C-CHHHHHHHHHHH
Confidence 56777888999999999999877652 23 2222333333222 12234888888888774 2 555666666655
Q ss_pred HhcC-----CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-----------------------------------
Q 017743 97 AQAR-----NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM----------------------------------- 136 (366)
Q Consensus 97 ~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------------------------------- 136 (366)
...+ ++++|...|++..+.|.. ..+..|...|...+.
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTC
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCC
Confidence 5554 678888888888776522 244444444443322
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----C
Q 017743 137 ----IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ---AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA----R 205 (366)
Q Consensus 137 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~ 205 (366)
.+.+..++..... .+...+..+...|...| +.++|++.|++..+.|. ++...+..+...|... +
T Consensus 157 ~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 157 YDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSC
T ss_pred cccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCC
Confidence 2222223332222 23337777888888888 89999999999988754 4555556666666554 6
Q ss_pred cHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-h--hccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----Ch
Q 017743 206 LQGKAEYVFQKMTAMKYTPSFITYECIITM-Y--GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-----LP 277 (366)
Q Consensus 206 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~ 277 (366)
++++|..+|++.. . -+...+..+... + ...+++++|...|+...+.| +...+..|...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 8999999999887 3 344555556555 3 45889999999999998877 6777888888887 55 99
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----hchHHHHHHHHHHHHhCCC
Q 017743 278 TEADLLFENSHNMGVTPDSSTYKLLYKAYTK----ANMKELVQKLLKRMEQNGI 327 (366)
Q Consensus 278 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~ 327 (366)
++|.+.|++.. .| +...+..|...|.. ..+.++|..+|++..+.|.
T Consensus 304 ~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 304 KAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 99999999887 33 67777777777766 3489999999999888764
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.42 E-value=1.5e-11 Score=112.48 Aligned_cols=169 Identities=8% Similarity=0.024 Sum_probs=148.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 162 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (366)
+.+..+|+.+...+.+.|++++|.+.|++.++.. +-+..+++.+..+|.+.|++++|++.|++..+.. +-+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4457889999999999999999999999999874 3367889999999999999999999999998864 2368899999
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcH
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 242 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 242 (366)
..++...|++++|++.|++.++.. +.+...|..+...+...|++++|+..|++..+.. +-+...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 999999999999999999998863 3368899999999999999999999999999874 44578899999999999999
Q ss_pred HHHHHHHHHHHhC
Q 017743 243 SRAREIFDELSKL 255 (366)
Q Consensus 243 ~~a~~~~~~~~~~ 255 (366)
++|.+.++++.+.
T Consensus 162 ~~A~~~~~kal~l 174 (723)
T 4gyw_A 162 TDYDERMKKLVSI 174 (723)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887763
No 80
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=2.2e-11 Score=104.07 Aligned_cols=226 Identities=8% Similarity=-0.055 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-----ChhhHHHHHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKP----NIVTYNILLRACAQARNVDQVNALFKELHESILA-P-----DIYTYNGVMDAY 131 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~~ll~~~ 131 (366)
..|++++|+..|++......-.+ ...++..+...+...|+++.|...+++..+.-.. + ...+++.+..+|
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 194 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF 194 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 44569999999999875311112 3467889999999999999999999998764211 1 235678888999
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhccCChhHHHHHHHHHHhc----CC-CCCHHHHHHHHHHH
Q 017743 132 GKNGMIKEMESVLSRMKSN----QCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS----KE-KPTLPTFNSMIINY 201 (366)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~ 201 (366)
...|++++|.+.+++..+. +-. ....++..+..+|...|++++|.+.+++..+. +. +....++..+...+
T Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 274 (383)
T 3ulq_A 195 LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIH 274 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 9999999999999987643 111 11247888999999999999999999998772 23 33467788899999
Q ss_pred HhcCcHhHHHHHHHHHHhC----CCCCCHHHHHHHHHHhhccCc---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 017743 202 GKARLQGKAEYVFQKMTAM----KYTPSFITYECIITMYGYCDN---VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274 (366)
Q Consensus 202 ~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 274 (366)
.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|..+++.... .......+..+...|...
T Consensus 275 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~ 352 (383)
T 3ulq_A 275 YKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAIDVAKYYHER 352 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHC
Confidence 9999999999999987753 112223346778888888998 6777777766521 112345677899999999
Q ss_pred CChhHHHHHHHHhhh
Q 017743 275 GLPTEADLLFENSHN 289 (366)
Q Consensus 275 g~~~~a~~~~~~~~~ 289 (366)
|++++|...+++..+
T Consensus 353 g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 353 KNFQKASAYFLKVEQ 367 (383)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.39 E-value=6.4e-10 Score=94.56 Aligned_cols=284 Identities=10% Similarity=0.015 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPNI----VTYNILLRACAQARNVDQVNALFKELHESILA-PD----IYTYNGVMDAYG 132 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~ 132 (366)
..|++++|...+++...... ..+. .+++.+...+...|++++|.+.+++....... .+ ..++..+...+.
T Consensus 26 ~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 34558899999888765321 1222 25667778888999999999999988764211 12 123566778889
Q ss_pred hcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC----CHHHHHHHHHHH
Q 017743 133 KNGMIKEMESVLSRMKSN----QCK--P-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP----TLPTFNSMIINY 201 (366)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~ 201 (366)
..|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........ ...++..+...+
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 999999999999987643 222 2 24456678888999999999999999987643221 235677788889
Q ss_pred HhcCcHhHHHHHHHHHHhCCCCCC--HHHHH----HHHHHhhccCcHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHH
Q 017743 202 GKARLQGKAEYVFQKMTAMKYTPS--FITYE----CIITMYGYCDNVSRAREIFDELSKLGKDM---KVSTLNAMLEAYC 272 (366)
Q Consensus 202 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~ 272 (366)
...|++++|...+++.......++ ..... ..+..+...|++++|...++........+ ....+..+...+.
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 264 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Confidence 999999999999998865311111 11111 23345778999999999999887654321 1335677888999
Q ss_pred hcCChhHHHHHHHHhhhC----CCCCCH-HHHHHHHHHHHhhchHHHHHHHHHHHHhC----CCC----CChhHHHHHHH
Q 017743 273 MNGLPTEADLLFENSHNM----GVTPDS-STYKLLYKAYTKANMKELVQKLLKRMEQN----GIV----PNKRFFLEALE 339 (366)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~----~~~~~~~~ll~ 339 (366)
..|++++|...++..... |..++. .++..+..++...|+.++|...+++..+. |.. ........+++
T Consensus 265 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~g~~~~~ll~ 344 (373)
T 1hz4_A 265 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLR 344 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHccHHHHHHHH
Confidence 999999999999887543 222222 36677788899999999999999887642 322 12233455666
Q ss_pred Hhhcccc
Q 017743 340 TFSSSLA 346 (366)
Q Consensus 340 ~~~~~~~ 346 (366)
.+.....
T Consensus 345 ~~~~~~~ 351 (373)
T 1hz4_A 345 QLIQLNT 351 (373)
T ss_dssp HHHHTTC
T ss_pred HHHhCCC
Confidence 6655544
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.38 E-value=6.7e-12 Score=102.15 Aligned_cols=228 Identities=14% Similarity=0.105 Sum_probs=159.7
Q ss_pred HhcCCHHHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHH
Q 017743 97 AQARNVDQVNALFKELHES-------ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN------QC-KPDIITFNLL 162 (366)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 162 (366)
...|++++|...+++..+. ..+....++..+...+...|++++|...+++..+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456777777777666542 22334667888999999999999999999998754 22 2346678889
Q ss_pred HHHHhccCChhHHHHHHHHHHhcC-----C--CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC------CCCC-CHHH
Q 017743 163 IDSYGKRQAFDKMEQVFKSLMHSK-----E--KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM------KYTP-SFIT 228 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~-----~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 228 (366)
...|...|++++|.+.+++..... . +....++..+...+...|++++|...+++..+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999987641 1 223567888899999999999999999998765 1123 3567
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChhHH------HHHHHHhhhCCCCC
Q 017743 229 YECIITMYGYCDNVSRAREIFDELSKL-------GKDM-KVSTLNAMLEAYCMNGLPTEA------DLLFENSHNMGVTP 294 (366)
Q Consensus 229 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~li~~~~~~g~~~~a------~~~~~~~~~~~~~p 294 (366)
+..+..++...|++++|...++...+. ...+ ....+..+...+...+....+ ...+...... .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 889999999999999999999988753 1111 233344444444443333332 2222222211 122
Q ss_pred CHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
...++..+...|...|++++|..++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567888999999999999999999988763
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.36 E-value=1.2e-11 Score=100.68 Aligned_cols=224 Identities=16% Similarity=0.100 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCC
Q 017743 64 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES------IL-APDIYTYNGVMDAYGKNGM 136 (366)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~~~ 136 (366)
..+++|++++.+... ...+....++..+...+...|++++|...++++.+. +- +....++..+...+...|+
T Consensus 22 ~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 100 (283)
T 3edt_B 22 PLCKQALEDLEKTSG-HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100 (283)
T ss_dssp HHHHHHHHHHHHHHC-SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc
Confidence 347888888888764 212334678899999999999999999999998865 21 2245678889999999999
Q ss_pred HHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhc------CCCC-CHHHHHHHHHHHH
Q 017743 137 IKEMESVLSRMKSN------Q-CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS------KEKP-TLPTFNSMIINYG 202 (366)
Q Consensus 137 ~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~ 202 (366)
+++|.+.+.+..+. . .+....++..+...+...|++++|...+++.... +..| ...++..+...+.
T Consensus 101 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 180 (283)
T 3edt_B 101 YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYL 180 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999998764 1 1234677888999999999999999999998764 1122 3567888999999
Q ss_pred hcCcHhHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHhhccCc------HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017743 203 KARLQGKAEYVFQKMTAM-------KYTPS-FITYECIITMYGYCDN------VSRAREIFDELSKLGKDMKVSTLNAML 268 (366)
Q Consensus 203 ~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~li 268 (366)
..|++++|...+++..+. ...+. ...+..+.......+. +..+...++..... ......++..+.
T Consensus 181 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la 259 (283)
T 3edt_B 181 KQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLRSLG 259 (283)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 999999999999988753 11122 2233333333322222 22332222222111 112456788899
Q ss_pred HHHHhcCChhHHHHHHHHhhh
Q 017743 269 EAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~ 289 (366)
..|...|++++|..++++..+
T Consensus 260 ~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 260 ALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999998765
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=3.1e-10 Score=96.71 Aligned_cols=224 Identities=9% Similarity=0.005 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-----ChhhHHHHHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPN----IVTYNILLRACAQARNVDQVNALFKELHESILA-P-----DIYTYNGVMDAY 131 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~~ll~~~ 131 (366)
..|++++|+..|++......-.++ ..++..+...|...|+++.|...+++..+.... + ...+++.+..+|
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y 192 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY 192 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 445699999999988753211232 457888999999999999999999988764211 1 245678888999
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhccCChhHHHHHHHHHHh-----cCCCCCHHHHHHHHHHH
Q 017743 132 GKNGMIKEMESVLSRMKSN----QCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMH-----SKEKPTLPTFNSMIINY 201 (366)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~ 201 (366)
...|++++|.+.+.+..+. +.. ....++..+..+|...|++++|.+.+++... .. +....++..+...+
T Consensus 193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~ 271 (378)
T 3q15_A 193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTL 271 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHH
Confidence 9999999999999987653 111 1245678889999999999999999999876 32 23377888899999
Q ss_pred HhcCcHhHHHHHHHHHHhCC----CCCCHHHHHHHHHHhhccCc---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 017743 202 GKARLQGKAEYVFQKMTAMK----YTPSFITYECIITMYGYCDN---VSRAREIFDELSKLGKDM-KVSTLNAMLEAYCM 273 (366)
Q Consensus 202 ~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~ 273 (366)
.+.|++++|...+++..+.. -+.....+..+...+...++ +.+|...++. .+..+ ....+..+...|..
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHH
Confidence 99999999999999987642 12224456777777778888 6777776665 22222 24566789999999
Q ss_pred cCChhHHHHHHHHhhh
Q 017743 274 NGLPTEADLLFENSHN 289 (366)
Q Consensus 274 ~g~~~~a~~~~~~~~~ 289 (366)
.|++++|...|++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988754
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.30 E-value=1.9e-10 Score=94.24 Aligned_cols=167 Identities=8% Similarity=-0.039 Sum_probs=82.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 017743 93 LRACAQARNVDQVNALFKELHES----ILAPD-IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 167 (366)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (366)
...|...|++++|...|.+..+. |-+++ ..+|+.+..+|.+.|++++|+..+++..+...
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~--------------- 108 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFT--------------- 108 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---------------
Confidence 55566666666666666665543 11111 34555555566666666666665555443210
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHhCCC---CC-C-HHHHHHHHHHhhccCc
Q 017743 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA-RLQGKAEYVFQKMTAMKY---TP-S-FITYECIITMYGYCDN 241 (366)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~---~~-~-~~~~~~l~~~~~~~~~ 241 (366)
..|+... -..++..+...|... |++++|...|++..+... .+ . ..++..+...+...|+
T Consensus 109 ~~g~~~~---------------~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 109 HRGQFRR---------------GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp HTTCHHH---------------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HcCCHHH---------------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC
Confidence 0000000 022344445555553 555555555555443210 00 0 2345555666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 242 VSRAREIFDELSKLGKDMKV------STLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
+++|...|+...+..+.... ..|..+..++...|++++|...|++..+
T Consensus 174 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666666666554322111 1345555566666666666666666654
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.27 E-value=1.3e-09 Score=87.82 Aligned_cols=190 Identities=12% Similarity=0.032 Sum_probs=114.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CC-HHHH
Q 017743 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD---IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PT-LPTF 194 (366)
Q Consensus 120 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~ 194 (366)
+...+..+...+.+.|++++|...|+++.+.... + ...+..+..++...|++++|...|++.+...+. |. ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4455666666777777777777777777665321 2 456666677777777777777777777664321 11 3445
Q ss_pred HHHHHHHHh--------cCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHH
Q 017743 195 NSMIINYGK--------ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 266 (366)
Q Consensus 195 ~~li~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 266 (366)
..+..++.. .|++++|...|+++.+.. +.+......+.. +..+... ....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 556666666 667777777777666542 111111111100 0000000 0112355
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHhh----------chHHHHHHHHHHHHhCCCCCCh
Q 017743 267 MLEAYCMNGLPTEADLLFENSHNMGVTP--DSSTYKLLYKAYTKA----------NMKELVQKLLKRMEQNGIVPNK 331 (366)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~m~~~g~~~~~ 331 (366)
+...|...|++++|+..|+++.+..... ....+..+..++... |++++|...|+++.+. .|+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 6778888888888888888887653221 245677777777766 8888899999888874 3554
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.26 E-value=2.4e-09 Score=86.41 Aligned_cols=144 Identities=11% Similarity=0.065 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 017743 105 VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC-KPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 183 (366)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 183 (366)
|...++++...+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444332 23333334444455555555555555555443322 1234444444555555555555555555554
Q ss_pred hcCCCC-----CHHHHHHHHHHH--HhcC--cHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 017743 184 HSKEKP-----TLPTFNSMIINY--GKAR--LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253 (366)
Q Consensus 184 ~~~~~~-----~~~~~~~li~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 253 (366)
+. .| +..+...+..++ ...| ++.+|..+|+++.+. .|+..+...++.++...|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 22 123333333331 1112 455555555554433 2332222222224445555555555554433
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.24 E-value=5e-10 Score=91.74 Aligned_cols=97 Identities=9% Similarity=-0.085 Sum_probs=59.0
Q ss_pred hHHHHHHHHhhchHHHHHHHHHHHHHHHHhcC---CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C--
Q 017743 48 VYNALITAHLHTRDKAKALAKALGYFQKMKGM---ERCKPN-IVTYNILLRACAQARNVDQVNALFKELHESILAP-D-- 120 (366)
Q Consensus 48 ~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-- 120 (366)
.|......+. ..|++++|+..|.+.... .+.++. ..+|+.+..+|...|++++|...+++.++..... +
T Consensus 39 ~~~~a~~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~ 114 (292)
T 1qqe_A 39 LCVQAATIYR----LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR 114 (292)
T ss_dssp HHHHHHHHHH----HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3444444444 345588888888877542 111222 5688999999999999999999999887642100 1
Q ss_pred --hhhHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 017743 121 --IYTYNGVMDAYGKN-GMIKEMESVLSRMK 148 (366)
Q Consensus 121 --~~~~~~ll~~~~~~-~~~~~a~~~~~~~~ 148 (366)
..+++.+...|... |++++|+..|++..
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22444445555553 55555555555543
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.23 E-value=1.5e-09 Score=87.30 Aligned_cols=188 Identities=12% Similarity=-0.050 Sum_probs=133.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHH
Q 017743 83 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD---IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK--PDII 157 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~ 157 (366)
+.+...+..+...+...|++++|...|+++.+.. +.+ ...+..+..++.+.|++++|...|+...+.... ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4567788888899999999999999999999864 223 567888899999999999999999999886321 2245
Q ss_pred HHHHHHHHHhc--------cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHH
Q 017743 158 TFNLLIDSYGK--------RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 229 (366)
Q Consensus 158 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 229 (366)
.+..+..++.. .|++++|...|++++...+. +......+... ..+.. -....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~----~~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRA----KLARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHH----HHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHH----HHHHHH
Confidence 67778888888 99999999999999885332 22222221110 00000 001124
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc----------CChhHHHHHHHHhhhC
Q 017743 230 ECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMN----------GLPTEADLLFENSHNM 290 (366)
Q Consensus 230 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~ 290 (366)
..+...+...|++++|...|+.+.+..+.. ....+..+..+|... |++++|...|+++.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 566677778888888888888877654332 245666677777755 7778888888888765
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.23 E-value=1.1e-09 Score=78.05 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 33333444444444444444444433322 1123333444444444444444444444433
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.23 E-value=1e-09 Score=78.22 Aligned_cols=132 Identities=14% Similarity=0.136 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 017743 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236 (366)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (366)
..+..+...+...|++++|..+++++.... +.+...+..+...+...|++++|...++++.... +.+...+..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 356778889999999999999999998763 3467888889999999999999999999998765 45677888999999
Q ss_pred hccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 017743 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291 (366)
Q Consensus 237 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (366)
...|++++|...++.+.+..+. +...+..+...+...|++++|...++++....
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 9999999999999999887544 67888999999999999999999999987653
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.23 E-value=1.2e-09 Score=84.56 Aligned_cols=94 Identities=14% Similarity=0.104 Sum_probs=46.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH----------------HHHHHhccCChhHHHHHHHHHHhc
Q 017743 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD-IITFNL----------------LIDSYGKRQAFDKMEQVFKSLMHS 185 (366)
Q Consensus 123 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~ 185 (366)
.+......+...|++++|+..|++..+. .|+ ...+.. +..++.+.|++++|+..|++.++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444455666778888888888877765 232 333333 444444444444444444444443
Q ss_pred CCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHh
Q 017743 186 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219 (366)
Q Consensus 186 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 219 (366)
. +.+...+..+...+...|++++|...|++..+
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 12334444444444444444444444444444
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.22 E-value=1.8e-09 Score=87.20 Aligned_cols=243 Identities=10% Similarity=-0.046 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 017743 64 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 143 (366)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 143 (366)
|.+..++.-..++.. ..+ ...-.-+.+++...|++... ....|....+..+...+ ..+ ++..
T Consensus 27 G~yq~~i~e~~~~~~---~~~-~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~ 88 (310)
T 3mv2_B 27 GNFVQCLQEIEKFSK---VTD-NTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEE 88 (310)
T ss_dssp TCHHHHTHHHHTSSC---CCC-HHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred hHHHHHHHHHHhcCc---cch-HHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHH
Confidence 336666653333322 122 23334456777777776531 12233333444443333 322 6778
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCC
Q 017743 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222 (366)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 222 (366)
|++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-- 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-- 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 88777665 45566667888889999999999999999877654 236778888999999999999999999999875
Q ss_pred CC-----CHHHHHHHHHHhh--c--cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC--
Q 017743 223 TP-----SFITYECIITMYG--Y--CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG-- 291 (366)
Q Consensus 223 ~~-----~~~~~~~l~~~~~--~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-- 291 (366)
.| +..+...+..++. . .++..+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.+..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 45 3556666665532 2 348999999999987753 343344445558899999999999998766531
Q ss_pred -------CCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhH
Q 017743 292 -------VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 333 (366)
Q Consensus 292 -------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 333 (366)
-+-|+.++..+|......|+ +|.+++.++.+. .|+...
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~ 288 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHAF 288 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChH
Confidence 03367777677777777787 888999999884 466543
No 94
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.22 E-value=4.1e-08 Score=88.96 Aligned_cols=193 Identities=11% Similarity=-0.022 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHHhccCChhHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC---------CCC
Q 017743 155 DIITFNLLIDSYGKRQAFDKME-QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---------YTP 224 (366)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~~~ 224 (366)
+...|...+..+...|+.+.|. ++|++.... .+.+...|...+....+.|+++.|..+|+.+.... ..|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 3444444455555667777775 888888764 44566667777777778888888888888877531 013
Q ss_pred C------------HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHhhhCC
Q 017743 225 S------------FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN-GLPTEADLLFENSHNMG 291 (366)
Q Consensus 225 ~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~ 291 (366)
+ ..+|...+....+.|..+.|..+|....+.-.......|...+..-.+. ++.+.|.++|+...+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~- 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY- 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-
Confidence 1 2357777777777788888888888887651112334444333333333 4578888888887775
Q ss_pred CCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCC--ChhHHHHHHHHhhcccccCC
Q 017743 292 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP--NKRFFLEALETFSSSLAGSQ 349 (366)
Q Consensus 292 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~~~~~~ 349 (366)
++-+...+...++.....|+.+.|..+|++.......+ ....|...++--...|....
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 33456666777777778888888888888888754322 22344444444444454433
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.20 E-value=2.1e-09 Score=83.29 Aligned_cols=162 Identities=11% Similarity=0.007 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH----------------HHHHHHhcCCHHHHHHHHHHHHHCC
Q 017743 88 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG----------------VMDAYGKNGMIKEMESVLSRMKSNQ 151 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~ 151 (366)
.+......+...|++++|...|++..+.. +-+...+.. +..++.+.|++++|+..|++..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 33444455666777777777777766653 113344555 6666777777777777777766653
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc--HhHHHHHHHHHHhCCCCCCHHHH
Q 017743 152 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL--QGKAEYVFQKMTAMKYTPSFITY 229 (366)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~ 229 (366)
+.+...+..+..++...|++++|...|++.++.. +.+..++..+...|...|+ ...+...++.... ..|....+
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 2256666677777777777777777777776642 2345566666665544432 2233333333321 11222222
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHh
Q 017743 230 ECIITMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 230 ~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (366)
.....++...|++++|...|++..+
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2233333444555555555555554
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.20 E-value=1.1e-07 Score=77.52 Aligned_cols=220 Identities=7% Similarity=-0.043 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hcc---CC
Q 017743 101 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG--MIKEMESVLSRMKSNQCKPDIITFNLLIDSY----GKR---QA 171 (366)
Q Consensus 101 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 171 (366)
..++|+++++.++... +-+..+|+.--.++...+ +++++++.++.+.....+ +..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 3467888888888764 224556777777777777 888888888888876433 555555444433 333 67
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHh--HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc------HH
Q 017743 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG--KAEYVFQKMTAMKYTPSFITYECIITMYGYCDN------VS 243 (366)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~ 243 (366)
+++++++++.+.+.. +-+..+|+.-...+.+.|.++ ++++.+.++.+.. +-+...|+.-...+...++ ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 888999998888763 347778887777777788887 8888888888775 4567777766666666666 88
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHhhhCC--CCCCHHHHHHHHHHHHhhchHHHHHHHHH
Q 017743 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE-ADLLFENSHNMG--VTPDSSTYKLLYKAYTKANMKELVQKLLK 320 (366)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 320 (366)
++++.++.+....+. |...|+.+-..+.+.|+... +..+..++.+.+ -..+...+..++..+.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 999999998888766 88999988888888887554 556777766543 13478889999999999999999999999
Q ss_pred HHHhC
Q 017743 321 RMEQN 325 (366)
Q Consensus 321 ~m~~~ 325 (366)
.+.+.
T Consensus 283 ~l~~~ 287 (306)
T 3dra_A 283 LLKSK 287 (306)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 98763
No 97
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.18 E-value=1.2e-07 Score=85.84 Aligned_cols=250 Identities=11% Similarity=0.058 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHH
Q 017743 87 VTYNILLRACAQAR-------NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME-SVLSRMKSNQCKPDIIT 158 (366)
Q Consensus 87 ~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~ 158 (366)
..|...+..--..+ ..+.+..+|++++.. .+-+...|...+..+...|+.++|. ++|+..... ++.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 34555555443332 134566788888876 3557788888888888899999997 999999875 4556777
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCC---------CCC------------HHHHHHHHHHHHhcCcHhHHHHHHHHH
Q 017743 159 FNLLIDSYGKRQAFDKMEQVFKSLMHSKE---------KPT------------LPTFNSMIINYGKARLQGKAEYVFQKM 217 (366)
Q Consensus 159 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~~ 217 (366)
|...+...-+.|+++.|.++|+.+++... .|+ ...|...+....+.|..+.|..+|...
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888899999999999999876410 131 346777888888889999999999999
Q ss_pred HhC-CCCCCHHHHHHHHHHhhcc-CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-
Q 017743 218 TAM-KYTPSFITYECIITMYGYC-DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP- 294 (366)
Q Consensus 218 ~~~-~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p- 294 (366)
.+. + .+....|...+..-.+. ++.+.|..+|+...+.-. -+...|...+......|+.+.|..+|++.......+
T Consensus 461 ~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 461 RRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA-TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 876 3 22333443333332333 558999999999988733 367788899998889999999999999998865322
Q ss_pred -CHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 017743 295 -DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342 (366)
Q Consensus 295 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 342 (366)
....|...++.-.+.|+.+.+.++.+++.+. .|+......+.+-|.
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHhc
Confidence 3467888888888999999999999999984 356555555555553
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.16 E-value=3e-10 Score=83.01 Aligned_cols=145 Identities=12% Similarity=0.060 Sum_probs=92.9
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 241 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 241 (366)
|...+...|++++|+..++..... .+.+...+..+...|.+.|++++|...|++..+.. +-+..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~-~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS-PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS-HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhccc-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 344556667777777777776542 11123445566777777778888887777777654 4456777777777777788
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH-HHHhhhCCCCCCHHHHHHHHHHHHhhc
Q 017743 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL-FENSHNMGVTPDSSTYKLLYKAYTKAN 310 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~~ 310 (366)
+++|...|+...+.++. +...|..+...|.+.|++++|.+. +++..+..+ -+..+|......+...|
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 88888887777776544 567777777777777777665554 466666432 24556655555554444
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.15 E-value=3.1e-09 Score=97.45 Aligned_cols=173 Identities=6% Similarity=-0.074 Sum_probs=136.4
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 017743 132 GKNGMIKEMESVLSRMK--------SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 203 (366)
Q Consensus 132 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 203 (366)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|.+.|++..+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67889999999999887 432 3456778888888999999999999999988753 3467788888888999
Q ss_pred cCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 017743 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283 (366)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 283 (366)
.|++++|...|++..+.. +.+...+..+..++...|++++ ...|+...+.++. +...|..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988764 3456788888888999999999 9999998887655 678888899999999999999999
Q ss_pred HHHhhhCCCCCC-HHHHHHHHHHHHhhch
Q 017743 284 FENSHNMGVTPD-SSTYKLLYKAYTKANM 311 (366)
Q Consensus 284 ~~~~~~~~~~p~-~~~~~~l~~~~~~~~~ 311 (366)
|++..+.+ |+ ...+..+..++...++
T Consensus 557 ~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 99888754 44 5667777777655443
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.15 E-value=8.3e-10 Score=101.23 Aligned_cols=185 Identities=8% Similarity=-0.072 Sum_probs=150.5
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 017743 97 AQARNVDQVNALFKELH--------ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168 (366)
Q Consensus 97 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (366)
...|++++|.+.+++.. +. .+.+...+..+..++.+.|++++|++.|++..+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999998 43 24466788889999999999999999999998864 3377889999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 248 (366)
.|++++|.+.|++..+... .+...+..+..++.+.|++++ ...|++..+.+ +.+...|..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999988633 367788899999999999999 99999998875 45678899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHh
Q 017743 249 FDELSKLGKDMKVSTLNAMLEAYCMNGL--------PTEADLLFENS 287 (366)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~li~~~~~~g~--------~~~a~~~~~~~ 287 (366)
|++..+.++. +...+..+..++...++ +++|.+.+..+
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 9999887544 46777778777766554 44555555444
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.14 E-value=1.1e-08 Score=79.50 Aligned_cols=176 Identities=7% Similarity=-0.034 Sum_probs=96.6
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----CHHHHHHH
Q 017743 68 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG----MIKEMESV 143 (366)
Q Consensus 68 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~ 143 (366)
+|++.|++..+ .-+...+..+...|...+++++|.+.|++..+.| +...+..+...|.. + ++++|.+.
T Consensus 4 eA~~~~~~aa~----~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAE----AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHH----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 34555555554 2455666666666666666777777666666654 44555555555555 4 66666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHh----cCcHhHHHHHH
Q 017743 144 LSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQVFKSLMHSKEK-PTLPTFNSMIINYGK----ARLQGKAEYVF 214 (366)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~ 214 (366)
|++..+.| +...+..+...|.. .+++++|.+.|++..+.+.. .....+..+...|.. .+++++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 66665543 44555555555555 56666666666666554321 014455555555555 45566666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHhhcc------CcHHHHHHHHHHHHhCC
Q 017743 215 QKMTAMKYTPSFITYECIITMYGYC------DNVSRAREIFDELSKLG 256 (366)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~ 256 (366)
++..+. ..+...+..|..+|... .+.++|...|+...+.|
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 665554 12222344444444322 15555655555555544
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.14 E-value=1.5e-08 Score=78.60 Aligned_cols=176 Identities=12% Similarity=0.003 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----ChhHHHHHH
Q 017743 104 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ----AFDKMEQVF 179 (366)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 179 (366)
+|.+.|++..+.| +...+..+...|...+++++|.+.|++..+.| +...+..+...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 55556666666666666666666666665543 44455555555555 4 566666666
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHh----cCcHhHHHHHHHHHHhCCCC-CCHHHHHHHHHHhhc----cCcHHHHHHHHH
Q 017743 180 KSLMHSKEKPTLPTFNSMIINYGK----ARLQGKAEYVFQKMTAMKYT-PSFITYECIITMYGY----CDNVSRAREIFD 250 (366)
Q Consensus 180 ~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 250 (366)
++..+.+ +...+..+...|.. .+++++|..+|++..+.+.. .....+..|...|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6654432 34444445444444 45555555555555544311 013444444444444 445555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHhhhCC
Q 017743 251 ELSKLGKDMKVSTLNAMLEAYCMN-G-----LPTEADLLFENSHNMG 291 (366)
Q Consensus 251 ~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~ 291 (366)
...+.+ .+...+..|...|... | ++++|...|+...+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 554431 1233344444444332 1 4455555555444443
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.12 E-value=1e-08 Score=80.41 Aligned_cols=189 Identities=11% Similarity=-0.009 Sum_probs=116.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCH--HHHH
Q 017743 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK-P-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL--PTFN 195 (366)
Q Consensus 120 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 195 (366)
+...+..+...+.+.|++++|...|+++.+.... | ....+..+..++.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666777888889999999999988875322 1 1356777888888999999999999998875433211 2344
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHH-------------
Q 017743 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS------------- 262 (366)
Q Consensus 196 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------- 262 (366)
.+..++...+.. .+ ..|..+...+...|++++|...|+.+.+..+. +..
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHH
Confidence 444444432100 00 00111111222234444444444444433221 111
Q ss_pred ----HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhhchHHHHHHHHHHHHhCC
Q 017743 263 ----TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD--SSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326 (366)
Q Consensus 263 ----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 326 (366)
....+...|.+.|++++|...|+++.+...... ...+..+..++.+.|++++|...++.+...+
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 113456778889999999999999987632211 2568888999999999999999999988764
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.11 E-value=4.6e-09 Score=85.71 Aligned_cols=164 Identities=7% Similarity=-0.076 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 017743 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY-ECII 233 (366)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~ 233 (366)
+...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++++.... |+.... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 34444455555555566666666666555542 2244555555555556666666666655554432 332221 1122
Q ss_pred HHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhhchH
Q 017743 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP-DSSTYKLLYKAYTKANMK 312 (366)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 312 (366)
..+...++.+.|...++......+. +...+..+...+...|++++|...+.++.+..... +...+..+...+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 2233445555555555555555433 45555556666666666666666666655543211 144555566666666666
Q ss_pred HHHHHHHHHH
Q 017743 313 ELVQKLLKRM 322 (366)
Q Consensus 313 ~~a~~~~~~m 322 (366)
++|...|++.
T Consensus 272 ~~a~~~~r~a 281 (287)
T 3qou_A 272 DALASXYRRQ 281 (287)
T ss_dssp CHHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 5555555543
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.11 E-value=2e-09 Score=80.96 Aligned_cols=157 Identities=7% Similarity=0.010 Sum_probs=67.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhc
Q 017743 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN-YGKA 204 (366)
Q Consensus 126 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~ 204 (366)
.+...+.+.|++++|...+++..+.. +.+...+..+..++...|++++|...+++...... +...+...... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhh
Confidence 33444445555555555555443321 11344444555555555555555555555443221 22222111111 1111
Q ss_pred CcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 017743 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM-KVSTLNAMLEAYCMNGLPTEADLL 283 (366)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~ 283 (366)
+....|...+++..+.. +.+...+..+..++...|++++|...|+.+.+..+.+ +...+..+...+...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 11122344444444332 2234444455555555555555555555554443322 233444455555555555555554
Q ss_pred HHH
Q 017743 284 FEN 286 (366)
Q Consensus 284 ~~~ 286 (366)
|++
T Consensus 167 y~~ 169 (176)
T 2r5s_A 167 YRR 169 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.09 E-value=3.6e-08 Score=77.29 Aligned_cols=186 Identities=11% Similarity=-0.029 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILAP--DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI--ITFNLL 162 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 162 (366)
..+..+...+...|++++|...|+++.+..... ....+..+..++.+.|++++|+..|+++.+....... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 344455566667777777777777776642111 1245566666777777777777777776654322111 123333
Q ss_pred HHHHh------------------ccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC
Q 017743 163 IDSYG------------------KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 224 (366)
Q Consensus 163 ~~~~~------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 224 (366)
..++. ..|++++|...|+++++..+. +...+...... ..+...+
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~------- 146 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL------- 146 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH-------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH-------
Confidence 33333 356777777777777764221 22222111100 0000000
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 017743 225 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSHNMG 291 (366)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 291 (366)
......+...+.+.|++++|...|+.+.+..+... ...+..+..++.+.|++++|.+.++.+...+
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01123456677888999999999998887644311 2567788888999999999999988887654
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.09 E-value=7.3e-09 Score=93.22 Aligned_cols=154 Identities=7% Similarity=-0.087 Sum_probs=103.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHH
Q 017743 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 213 (366)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 213 (366)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467788888888877653 2356777788888888888888888888887753 33577777788888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHhhhC
Q 017743 214 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN---GLPTEADLLFENSHNM 290 (366)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~ 290 (366)
+++..+.. +.+...+..+..++...|++++|.+.++...+.... +...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 88877764 445677788888888888888888888888776544 567777788888888 8888888888887776
Q ss_pred C
Q 017743 291 G 291 (366)
Q Consensus 291 ~ 291 (366)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.08 E-value=1.1e-07 Score=77.53 Aligned_cols=217 Identities=8% Similarity=-0.041 Sum_probs=140.6
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHH----Hhc---CCH
Q 017743 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQAR--NVDQVNALFKELHESILAPDIYTYNGVMDAY----GKN---GMI 137 (366)
Q Consensus 67 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---~~~ 137 (366)
++|+++++.+.... +-+..+|+.--..+...+ +++++++.++.++.... -+..+|+.--..+ ... +++
T Consensus 50 ~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCH
Confidence 45666666655432 334555666666666666 77777777777777642 2445555544444 444 677
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChh--HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc------HhH
Q 017743 138 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD--KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL------QGK 209 (366)
Q Consensus 138 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------~~~ 209 (366)
++++++++.+.+... -+..+|+.-...+.+.|.++ ++++.++++++..+ -|...|+.-...+...+. +++
T Consensus 127 ~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHH
Confidence 777788877776643 36677776666666677776 77777777777643 366677666666666555 777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 017743 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR-AREIFDELSKLG--KDMKVSTLNAMLEAYCMNGLPTEADLLFEN 286 (366)
Q Consensus 210 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (366)
+++.+..++... +-|...|+.+-..+.+.|+... +..+...+.+.+ -..+...+..+...|.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 777777777664 4567777777777766666333 444555554432 122667778888888888888888888888
Q ss_pred hhh
Q 017743 287 SHN 289 (366)
Q Consensus 287 ~~~ 289 (366)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 775
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.08 E-value=2e-09 Score=80.93 Aligned_cols=163 Identities=9% Similarity=-0.022 Sum_probs=126.7
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-h
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM-Y 236 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 236 (366)
.+......+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..... |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 34556677889999999999999987652 3467888999999999999999999999987654 354433332212 1
Q ss_pred hccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhhchHHHH
Q 017743 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP-DSSTYKLLYKAYTKANMKELV 315 (366)
Q Consensus 237 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 315 (366)
...+....|...++...+..+. +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1222334578889988887654 68899999999999999999999999999875443 366888999999999999999
Q ss_pred HHHHHHHHh
Q 017743 316 QKLLKRMEQ 324 (366)
Q Consensus 316 ~~~~~~m~~ 324 (366)
...|++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.07 E-value=5.2e-09 Score=85.41 Aligned_cols=167 Identities=8% Similarity=-0.081 Sum_probs=131.8
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHH-H
Q 017743 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN-S 196 (366)
Q Consensus 118 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ 196 (366)
+.+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 4456677778888899999999999999988764 3367788888999999999999999999887643 4443332 2
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 017743 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM-KVSTLNAMLEAYCMNG 275 (366)
Q Consensus 197 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 275 (366)
....+...++.+.|...+++..... +.+...+..+...+...|++++|...|..+.+..+.. +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2333566777888888888888764 5567888999999999999999999999998875542 2678899999999999
Q ss_pred ChhHHHHHHHHhh
Q 017743 276 LPTEADLLFENSH 288 (366)
Q Consensus 276 ~~~~a~~~~~~~~ 288 (366)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999988887654
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.06 E-value=8e-10 Score=80.72 Aligned_cols=108 Identities=10% Similarity=-0.023 Sum_probs=46.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHH
Q 017743 99 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178 (366)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 178 (366)
.|++++|+..++...... +-+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|...|++++|+..
T Consensus 10 ~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 344444444444443321 1122333344444455555555555555444432 12344444444444445555555555
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCcHhH
Q 017743 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGK 209 (366)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 209 (366)
|++.++.. +.+...+..+...|.+.|++++
T Consensus 88 ~~~al~~~-p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 88 YRRSVELN-PTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHH
Confidence 54444431 1134444444444444444443
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.05 E-value=6e-09 Score=93.78 Aligned_cols=163 Identities=7% Similarity=-0.079 Sum_probs=123.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHH
Q 017743 99 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 178 (366)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 178 (366)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988764 3367889999999999999999999999999874 33688899999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc---CcHHHHHHHHHHHHhC
Q 017743 179 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC---DNVSRAREIFDELSKL 255 (366)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 255 (366)
+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998863 3468889999999999999999999999998875 44678889999999999 9999999999999887
Q ss_pred CCCCCHHHHHH
Q 017743 256 GKDMKVSTLNA 266 (366)
Q Consensus 256 ~~~~~~~~~~~ 266 (366)
+.. +...+..
T Consensus 158 ~p~-~~~~~~~ 167 (568)
T 2vsy_A 158 GVG-AVEPFAF 167 (568)
T ss_dssp TCC-CSCHHHH
T ss_pred CCc-ccChHHH
Confidence 654 3334433
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.02 E-value=6.3e-08 Score=79.82 Aligned_cols=90 Identities=8% Similarity=0.047 Sum_probs=41.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC---C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCC--CHHHHHHH
Q 017743 93 LRACAQARNVDQVNALFKELHESILA---P--DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ---CKP--DIITFNLL 162 (366)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~--~~~~~~~l 162 (366)
...|...|++++|...|.+..+.... + -..+|+.+...|...|++++|+..|++..+.. -.+ -..++..+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455566666666666555442100 0 02244455555555555555555555443210 001 12334444
Q ss_pred HHHHhccCChhHHHHHHHHHH
Q 017743 163 IDSYGKRQAFDKMEQVFKSLM 183 (366)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~ 183 (366)
...|.. |++++|+..|++.+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHH
Confidence 444444 55555555554443
No 114
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.01 E-value=1.7e-06 Score=71.24 Aligned_cols=223 Identities=7% Similarity=-0.009 Sum_probs=161.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-C-ChhH
Q 017743 98 QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG-MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-Q-AFDK 174 (366)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~ 174 (366)
..+..++|+++++.++... +-+..+|+.--.++...| .+++++++++.+.....+ +..+|+.-...+... + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHH
Confidence 3445568889998888874 225566777777777777 589999999999887544 677777766666665 6 7889
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHh--------HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc-----
Q 017743 175 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG--------KAEYVFQKMTAMKYTPSFITYECIITMYGYCDN----- 241 (366)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 241 (366)
++++++.+++.. +-+..+|+--...+.+.+.++ ++++.+.++.+.. +-+...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 999999988753 336777776666666656665 8888888888775 5577788877777777765
Q ss_pred --HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh--------------------hHHHHHHHHhhhCC-----CCC
Q 017743 242 --VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP--------------------TEADLLFENSHNMG-----VTP 294 (366)
Q Consensus 242 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~p 294 (366)
++++++.++......+. |...|+-+-..+.+.|+. .........+...+ -.+
T Consensus 222 ~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 68888888888887665 888888877777776654 33444444444332 135
Q ss_pred CHHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
+......++..|...|+.++|.++++.+.+.
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 7888999999999999999999999998754
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.00 E-value=9e-08 Score=74.17 Aligned_cols=127 Identities=11% Similarity=0.015 Sum_probs=85.6
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (366)
.+..+...+...|++++|...|++. +.|+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 3445566667777777777777766 34566777777777777777777777777776654 345666777777777
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 238 YCDNVSRAREIFDELSKLGKDMKV----------------STLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
..|++++|...|+...+.... +. ..+..+..++...|++++|...|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 777777777777777665432 22 55666666677777777777777766654
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.00 E-value=7.2e-09 Score=85.48 Aligned_cols=224 Identities=11% Similarity=0.004 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 017743 63 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 141 (366)
Q Consensus 63 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 141 (366)
.+++++|.+++++..+.. +. .+.. .++++.|...|.+. ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KT----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CC----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--cc----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 466888888888776421 11 1222 57788888877765 45677889999999
Q ss_pred HHHHHHHHC----CCC-CCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC---CC--CHHHHHHHHHHHHhcCcHhHHH
Q 017743 142 SVLSRMKSN----QCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE---KP--TLPTFNSMIINYGKARLQGKAE 211 (366)
Q Consensus 142 ~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~~~~~~a~ 211 (366)
..|.+..+. +-. .-..+|..+...|...|++++|+..|++.++... .+ -..++..+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 999887543 111 1145788888899999999999999998765311 11 13567778888888 9999999
Q ss_pred HHHHHHHhCCC---CC--CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC----CCCC-HHHHHHHHHHHHhcCChhHHH
Q 017743 212 YVFQKMTAMKY---TP--SFITYECIITMYGYCDNVSRAREIFDELSKLG----KDMK-VSTLNAMLEAYCMNGLPTEAD 281 (366)
Q Consensus 212 ~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~li~~~~~~g~~~~a~ 281 (366)
..+++..+... .+ ...++..+...+...|++++|...|++..+.. ..+. ...+..+..++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998775421 11 14578888999999999999999999887642 1111 235667777888889999999
Q ss_pred HHHHHhhhCCCCCC---HH---HHHHHHHHHHhhchHHHHHHH
Q 017743 282 LLFENSHNMGVTPD---SS---TYKLLYKAYTKANMKELVQKL 318 (366)
Q Consensus 282 ~~~~~~~~~~~~p~---~~---~~~~l~~~~~~~~~~~~a~~~ 318 (366)
..|++.. . .|+ .. ....++.++ ..|+.+.+..+
T Consensus 216 ~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999988 4 343 22 334455555 56676665553
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.95 E-value=7.6e-08 Score=74.59 Aligned_cols=130 Identities=11% Similarity=-0.016 Sum_probs=84.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 017743 123 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 202 (366)
Q Consensus 123 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 202 (366)
.+..+...+...|++++|...|++.. .|+...+..+...+...|++++|...|++..... +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34455566667777777777776653 4466677777777777777777777777776652 335666666777777
Q ss_pred hcCcHhHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC
Q 017743 203 KARLQGKAEYVFQKMTAMKYT--------------P-SFITYECIITMYGYCDNVSRAREIFDELSKLGK 257 (366)
Q Consensus 203 ~~~~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 257 (366)
..|++++|...+++..+.... | ....+..+..++...|++++|...|+...+..+
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 777777777777777664311 1 125666666777777777777777777766543
No 118
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.93 E-value=1.2e-07 Score=70.12 Aligned_cols=130 Identities=12% Similarity=-0.022 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017743 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271 (366)
Q Consensus 192 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 271 (366)
..+..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|...++...+..+. +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 345666667777888888888888777653 345677778888888888888888888888776543 677888888888
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHH--HHHhhchHHHHHHHHHHHHh
Q 017743 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK--AYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~ 324 (366)
...|++++|...+++..+... .+...+..+.. .+...|++++|...+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888999999988888877642 24555533333 37778899999888876543
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.91 E-value=6e-08 Score=68.25 Aligned_cols=95 Identities=8% Similarity=-0.128 Sum_probs=51.1
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 307 (366)
.+......+.+.|++++|...|++..+..+. +...|..+..+|...|++++|+..+++.++.+ +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 4444555555555555555555555554333 45555555555555555555555555555543 224555555555555
Q ss_pred hhchHHHHHHHHHHHHh
Q 017743 308 KANMKELVQKLLKRMEQ 324 (366)
Q Consensus 308 ~~~~~~~a~~~~~~m~~ 324 (366)
..|++++|.+.|++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 55555555555555555
No 120
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.91 E-value=1.6e-05 Score=69.86 Aligned_cols=150 Identities=12% Similarity=0.010 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD-NVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 271 (366)
.|...+....+.++.+.|..+|+.. ... ..+...|......-...+ +.+.|..+|+...+.-.. ++..+...+...
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 3444455555567788888888888 321 234444443222222223 588888888888775332 455666677777
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhC----C-CCCC------------hhHH
Q 017743 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN----G-IVPN------------KRFF 334 (366)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g-~~~~------------~~~~ 334 (366)
...|+.+.|..+|+.+. .....|...+..-...|+.+.+..+++++.+. + -.|. ..++
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l 439 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRY 439 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHhhhH
Confidence 78888888888888873 25677777777777788888888888777631 1 1111 1567
Q ss_pred HHHHHHhhcccccCCC
Q 017743 335 LEALETFSSSLAGSQS 350 (366)
Q Consensus 335 ~~ll~~~~~~~~~~~~ 350 (366)
..+++.|+-.......
T Consensus 440 ~~~~~~~~~~~~~~~~ 455 (493)
T 2uy1_A 440 HCFLDSFNFLDLKIRD 455 (493)
T ss_dssp HHHHHHHCBTTBCCCC
T ss_pred HHHHHHhhhhccccCC
Confidence 7778877655444333
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.90 E-value=3.8e-07 Score=74.57 Aligned_cols=211 Identities=8% Similarity=-0.012 Sum_probs=141.7
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 017743 33 LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKEL 112 (366)
Q Consensus 33 ~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 112 (366)
.+..+..-...|+..+...+...+.-..+ .++..-.. ........+...+..+...|++++|..++++.
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~--~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~ 101 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIY--SDIERKKQFKDQVIMLCKQKRYKEIYNKVWNE 101 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTS--SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCC--CcchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444433346777777777666543221 12222111 00112334455688899999999999999998
Q ss_pred HHcCC-CCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCChhHHHHHHHHH
Q 017743 113 HESIL-APDI----YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK-PD----IITFNLLIDSYGKRQAFDKMEQVFKSL 182 (366)
Q Consensus 113 ~~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 182 (366)
.+... .|+. ..+..+...+...+++++|+..+++..+.... ++ ..+++.+...|...|++++|...|+++
T Consensus 102 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 102 LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 87431 2221 13345667777788999999999998874322 22 336888899999999999999999988
Q ss_pred Hhc-----CCCC-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHhhccCc-HHHHHHHHH
Q 017743 183 MHS-----KEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAM----KYTPS-FITYECIITMYGYCDN-VSRAREIFD 250 (366)
Q Consensus 183 ~~~-----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~-~~~a~~~~~ 250 (366)
.+. +..+ ...++..+...|.+.|++++|...+++..+. +..+. ..+|..+..++...|+ +++|...++
T Consensus 182 l~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 182 LKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 741 1112 2347788889999999999999998877643 22222 5788889999999994 689998888
Q ss_pred HHHh
Q 017743 251 ELSK 254 (366)
Q Consensus 251 ~~~~ 254 (366)
....
T Consensus 262 ~Al~ 265 (293)
T 3u3w_A 262 KASF 265 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.89 E-value=4.7e-07 Score=74.02 Aligned_cols=201 Identities=9% Similarity=-0.018 Sum_probs=143.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC
Q 017743 80 ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT---YNGVMDAYGKNGMIKEMESVLSRMKSNQC-KPD 155 (366)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 155 (366)
+...|+..+...+...+.-.- + .+ .......+... +...+..+...|++++|..++++..+... .|+
T Consensus 40 g~~~~~~~~l~~i~~~l~~~~--~---~~----~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~ 110 (293)
T 3u3w_A 40 GAVYPSMDILQGIAAKLQIPI--I---HF----YEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE 110 (293)
T ss_dssp TSCCCCHHHHHHHHHHHTCCT--H---HH----HHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHH
T ss_pred CCCCCCHHHHHHHHHHhCcCH--H---HH----hCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChH
Confidence 334788888777777664321 1 11 12122222333 33446788899999999999999887532 233
Q ss_pred H----HHHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCcHhHHHHHHHHHHh----C-C
Q 017743 156 I----ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PT----LPTFNSMIINYGKARLQGKAEYVFQKMTA----M-K 221 (366)
Q Consensus 156 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~-~ 221 (366)
. ..+..+...+...+++++|+..+++....... ++ ..+++.+...|...|++++|...+++..+ . +
T Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 190 (293)
T 3u3w_A 111 FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD 190 (293)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc
Confidence 2 23445777888889999999999999874222 22 34689999999999999999999999873 2 2
Q ss_pred CCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCC-hhHHHHHHHHhhh
Q 017743 222 YTPS-FITYECIITMYGYCDNVSRAREIFDELSKL----GKDM-KVSTLNAMLEAYCMNGL-PTEADLLFENSHN 289 (366)
Q Consensus 222 ~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~ 289 (366)
..+. ..++..+...|.+.|++++|...++...+. +..+ -..+|..+..+|...|+ +++|.+.+++...
T Consensus 191 ~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 191 NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 1222 347889999999999999999999887643 2222 26789999999999995 5999998887653
No 123
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.89 E-value=3.9e-08 Score=71.44 Aligned_cols=98 Identities=13% Similarity=0.103 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017743 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270 (366)
Q Consensus 191 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 270 (366)
...+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|...|+...+..+. ++..|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 3345555556666666666666666666553 334556666666666666666666666666665443 45566666666
Q ss_pred HHhcCChhHHHHHHHHhhhC
Q 017743 271 YCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~ 290 (366)
|...|++++|...|++..+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666654
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.85 E-value=1.3e-07 Score=66.46 Aligned_cols=60 Identities=12% Similarity=0.008 Sum_probs=22.4
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (366)
.|..+..++...|++++|...++...+.++. +...|..+..++...|++++|.+.|++..
T Consensus 49 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 49 LYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333333333333333333333333333222 23333333333333333333333333333
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.85 E-value=1.6e-07 Score=69.39 Aligned_cols=127 Identities=8% Similarity=-0.004 Sum_probs=68.9
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (366)
.+..+...+...|+++.|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444555555566666666666555532 2245555555556666666666666666655543 334555666666666
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHh
Q 017743 238 YCDNVSRAREIFDELSKLGKDMKVSTLNA--MLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~~ 287 (366)
..|++++|...++...+..+. +...+.. ....+...|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666666554332 3333322 222355556666666655543
No 126
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.85 E-value=5.1e-06 Score=72.95 Aligned_cols=295 Identities=8% Similarity=-0.004 Sum_probs=160.4
Q ss_pred ccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCC-CCC
Q 017743 7 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC-KPN 85 (366)
Q Consensus 7 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 85 (366)
+..-..+|...+..+-. |+++.+..+|+..... .|+...|...+....+.++ ..+....+|+.....-|. +++
T Consensus 11 i~~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~---~~~~i~~~fe~al~~vg~d~~s 84 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQ---KKFKLYEVYEFTLGQFENYWDS 84 (493)
T ss_dssp -CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC-------CTHHHHHHHHHHSTTCTTC
T ss_pred hHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCc---hHHHHHHHHHHHHHHcCCCccc
Confidence 33445567777776655 7788888888887764 4677777777766543321 123445556555433332 345
Q ss_pred HHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCC-h-h-------------------------------------
Q 017743 86 IVTYNILLRACA----QARNVDQVNALFKELHESILAPD-I-Y------------------------------------- 122 (366)
Q Consensus 86 ~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~-~-~------------------------------------- 122 (366)
...|...+..+. ..++.+.+.++|++.+.. ++. . .
T Consensus 85 ~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~ 162 (493)
T 2uy1_A 85 YGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQ 162 (493)
T ss_dssp HHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHH
Confidence 666776666543 235667777777777763 211 1 1
Q ss_pred -----------hHHHHHHHHHhc--CC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 017743 123 -----------TYNGVMDAYGKN--GM-----IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184 (366)
Q Consensus 123 -----------~~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (366)
.|...+..-... +- .+.+..+|+++... .+.+...|...+..+...|+.+.|..++++...
T Consensus 163 ~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 163 IQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 111111110010 00 12344555555543 233455666666666667777777777777776
Q ss_pred cCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC---C------C---CCCHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 017743 185 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM---K------Y---TPSFITYECIITMYGYCDNVSRAREIFDEL 252 (366)
Q Consensus 185 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~------~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 252 (366)
. +.+...+.. |....+.++. ++.+.+. . . ......|...+....+.++.+.|..+|+..
T Consensus 242 ~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 242 M--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp H--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred C--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 5 222222221 1111111111 1111110 0 0 011234555666666678899999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 017743 253 SKLGKDMKVSTLNAMLEAYCM-NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322 (366)
Q Consensus 253 ~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 322 (366)
.. ...+...|......-.. .++.+.|..+|+...+.- +-+...+...++...+.|+.+.|..+|++.
T Consensus 313 -~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 313 -GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp -TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred -hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 32 22345555433332222 336999999999988753 224556667777778889999988777764
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.84 E-value=5.2e-08 Score=79.14 Aligned_cols=98 Identities=8% Similarity=-0.058 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (366)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44566667777777777777777777777653 2256667777777777777777777777776653 235566667777
Q ss_pred HHhccCChhHHHHHHHHHHh
Q 017743 165 SYGKRQAFDKMEQVFKSLMH 184 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~ 184 (366)
++...|++++|...|++...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777776655
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.83 E-value=7.3e-08 Score=72.33 Aligned_cols=121 Identities=11% Similarity=0.144 Sum_probs=70.6
Q ss_pred hccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-hhccCcH--H
Q 017743 167 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM-YGYCDNV--S 243 (366)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 243 (366)
...|++++|...++...... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 44566666666666665542 2355666666666666666666666666666543 2345555555555 5556665 6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
+|...++.+.+..+. +...+..+...+...|++++|...|+++.+.
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666666665433 4555666666666666666666666666654
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.83 E-value=2.9e-07 Score=64.16 Aligned_cols=96 Identities=15% Similarity=0.120 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 272 (366)
.+..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++.+.+.... +...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHH
Confidence 34444444444445555544444444332 223344444444444555555555555544443222 3444445555555
Q ss_pred hcCChhHHHHHHHHhhhC
Q 017743 273 MNGLPTEADLLFENSHNM 290 (366)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~ 290 (366)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 555555555555554443
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.82 E-value=7.3e-08 Score=73.97 Aligned_cols=155 Identities=14% Similarity=0.029 Sum_probs=75.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhhccCcHH
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM----KYTP-SFITYECIITMYGYCDNVS 243 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~ 243 (366)
.|++++|.++++.+... ......++..+...+...|++++|...+++..+. +..+ ...++..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 44555555533333221 1123344445555555555555555555544431 1111 1334555555666666666
Q ss_pred HHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCC----HHHHHHHHHHHHhhchH
Q 017743 244 RAREIFDELSKL----GKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV-TPD----SSTYKLLYKAYTKANMK 312 (366)
Q Consensus 244 ~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~ 312 (366)
+|...+++..+. +..+ ....+..+...+...|++++|...+++...... ..+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666554432 1011 133455566666666666666666665542100 011 22345566666677777
Q ss_pred HHHHHHHHHHHh
Q 017743 313 ELVQKLLKRMEQ 324 (366)
Q Consensus 313 ~~a~~~~~~m~~ 324 (366)
++|...+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766666553
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.82 E-value=5.2e-08 Score=79.15 Aligned_cols=194 Identities=6% Similarity=-0.039 Sum_probs=133.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 017743 120 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 199 (366)
Q Consensus 120 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 199 (366)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..+|.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45677888899999999999999999998863 3378889999999999999999999999998863 346788899999
Q ss_pred HHHhcCcHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 017743 200 NYGKARLQGKAEYVFQKMTAMKYTPSF-ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 278 (366)
Q Consensus 200 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 278 (366)
++...|++++|...|++..+.. |+. ..+...+....+ ...+. -+..........+......+.. + ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 9999999999999999887642 211 011111111111 11111 1222233333444554444433 2 368999
Q ss_pred HHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhh-chHHHHHHHHHHHHhC
Q 017743 279 EADLLFENSHNMGVTPDSS-TYKLLYKAYTKA-NMKELVQKLLKRMEQN 325 (366)
Q Consensus 279 ~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-~~~~~a~~~~~~m~~~ 325 (366)
+|.+.++...+. .|+.. ....+...+.+. +.+++|.++|.+..+.
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999888775 45543 334444444444 6788999999887653
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.82 E-value=1.2e-06 Score=71.53 Aligned_cols=163 Identities=10% Similarity=0.043 Sum_probs=89.5
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCC---CCC--HHHHH
Q 017743 161 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPT-----LPTFNSMIINYGKARLQGKAEYVFQKMTAMKY---TPS--FITYE 230 (366)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~ 230 (366)
..+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|...+++..+... .+. ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344455555666666666555544322111 01122334445555666666666666654311 111 33566
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHh---CCCC-C--CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC----CCC-CHHHH
Q 017743 231 CIITMYGYCDNVSRAREIFDELSK---LGKD-M--KVSTLNAMLEAYCMNGLPTEADLLFENSHNMG----VTP-DSSTY 299 (366)
Q Consensus 231 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~p-~~~~~ 299 (366)
.+...|...|++++|...++...+ .... + ...++..+...|...|++++|...+++..+.. ... -..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 666777777777777777766552 1111 1 12466667777777777777777777655321 111 14566
Q ss_pred HHHHHHHHhhchHHHH-HHHHHHHH
Q 017743 300 KLLYKAYTKANMKELV-QKLLKRME 323 (366)
Q Consensus 300 ~~l~~~~~~~~~~~~a-~~~~~~m~ 323 (366)
..+...+.+.|++++| ...+++..
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 7777777777777777 55566544
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.82 E-value=1.5e-06 Score=71.04 Aligned_cols=163 Identities=7% Similarity=-0.063 Sum_probs=83.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCChhHHHHHHHHHHhcCC---CCC--HHHHH
Q 017743 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPD-----IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE---KPT--LPTFN 195 (366)
Q Consensus 126 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~ 195 (366)
..+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|...+++...... .+. ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344445555555555555554444321111 01223344445555666666666665543211 111 33555
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC----CC-CCHHHH
Q 017743 196 SMIINYGKARLQGKAEYVFQKMTA---M-KYTP--SFITYECIITMYGYCDNVSRAREIFDELSKLG----KD-MKVSTL 264 (366)
Q Consensus 196 ~li~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~ 264 (366)
.+...|...|++++|...+++..+ . +..+ ...++..+..+|...|++++|...++...+.. .. .-..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 666666666666666666665542 1 1011 11456666666666667766666666654321 11 114556
Q ss_pred HHHHHHHHhcCChhHH-HHHHHHhh
Q 017743 265 NAMLEAYCMNGLPTEA-DLLFENSH 288 (366)
Q Consensus 265 ~~li~~~~~~g~~~~a-~~~~~~~~ 288 (366)
..+..+|...|++++| ...+++..
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6666677777777776 55555543
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.81 E-value=6.9e-08 Score=72.47 Aligned_cols=118 Identities=8% Similarity=0.072 Sum_probs=62.4
Q ss_pred cCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCh--hHH
Q 017743 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA-YCMNGLP--TEA 280 (366)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~a 280 (366)
.|++++|...++...+.. +.+...+..+..++...|++++|...|+...+..+. +...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHH
Confidence 455555555555555442 334455555555566666666666666655554332 44555555555 5555555 666
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 281 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 281 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
...+++..+... .+...+..+...+...|++++|...+++..+
T Consensus 101 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 666665555431 2345555555556666666666666665554
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.81 E-value=3.6e-08 Score=71.60 Aligned_cols=95 Identities=8% Similarity=-0.069 Sum_probs=45.9
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 307 (366)
.+..+...+...|++++|...|+.+...++. +...|..+..+|...|++++|+..|++...... .+...+..+..++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 3444444444555555555555554444322 444444555555555555555555555444331 13444444555555
Q ss_pred hhchHHHHHHHHHHHHh
Q 017743 308 KANMKELVQKLLKRMEQ 324 (366)
Q Consensus 308 ~~~~~~~a~~~~~~m~~ 324 (366)
..|++++|...|++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555443
No 136
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.81 E-value=2.7e-07 Score=64.32 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 017743 157 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236 (366)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (366)
..+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444555555555555555555554432 2234455555555555555555555555555432 23444555555555
Q ss_pred hccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017743 237 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271 (366)
Q Consensus 237 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 271 (366)
...|++++|...++.+.+..+. +...+..+...+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 5666666666666655554322 334444443333
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.81 E-value=2.2e-07 Score=65.77 Aligned_cols=115 Identities=8% Similarity=-0.096 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017743 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 270 (366)
Q Consensus 191 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 270 (366)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++...+.... +...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 4445555555555666666666666555443 234455555555666666666666666665554332 45555556666
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 017743 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 308 (366)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 308 (366)
+...|++++|.+.+++..+... .+...+..+...+..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHH
Confidence 6666666666666665554321 123344444444433
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.80 E-value=2.9e-07 Score=64.80 Aligned_cols=61 Identities=11% Similarity=-0.007 Sum_probs=24.2
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
.+..+..++...|++++|...++...+..+. +...+..+...+...|++++|...+++..+
T Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 48 YFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3333333344444444444444443333211 233344444444444444444444444433
No 139
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.78 E-value=3.3e-06 Score=69.59 Aligned_cols=218 Identities=7% Similarity=-0.035 Sum_probs=130.2
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-C-CHHHHHHH
Q 017743 67 AKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELHESILAPDIYTYNGVMDAYGKN-G-MIKEMESV 143 (366)
Q Consensus 67 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~~~~a~~~ 143 (366)
++|+++++.+.... +-+..+|+.--..+...| .++++++.++.++.... -+..+|+.-..++.+. + ++++++++
T Consensus 71 e~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 71 ERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred HHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 45666666655432 344555666555555666 47777777777776542 3556666665555554 5 66777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChh--------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc-------Hh
Q 017743 144 LSRMKSNQCKPDIITFNLLIDSYGKRQAFD--------KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL-------QG 208 (366)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~ 208 (366)
++.+.+...+ |...|+.-...+.+.|.++ ++++.++++++..+ -|...|+.....+.+.+. ++
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHH
Confidence 7777765432 5666665555555555555 77777777776533 366667666666666554 56
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcH--------------------HHHHHHHHHHHhCC-----CCCCHHH
Q 017743 209 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV--------------------SRAREIFDELSKLG-----KDMKVST 263 (366)
Q Consensus 209 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~~~~~~~ 263 (366)
++++.+.+.+... +-|...|+.+-..+.+.|+. .........+.... ..++...
T Consensus 226 eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 226 DELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 6777777666654 44566666555544444432 22222222222221 1247778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 264 LNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
+..++..|...|+.++|.++++.+.+.
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 888889999999999999999988643
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.78 E-value=1.1e-07 Score=69.01 Aligned_cols=106 Identities=9% Similarity=0.033 Sum_probs=92.8
Q ss_pred CCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHH
Q 017743 223 TPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 301 (366)
Q Consensus 223 ~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 301 (366)
.|+ ...+..+...+...|++++|...|+.+...++. +...|..+..+|...|++++|+..|++..+..+. +...|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHH
Confidence 343 557888888999999999999999999998765 7899999999999999999999999999987633 6788999
Q ss_pred HHHHHHhhchHHHHHHHHHHHHhCCCCCChh
Q 017743 302 LYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332 (366)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 332 (366)
+..++...|++++|...|++..+. .|+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 999999999999999999999984 35554
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.77 E-value=2.6e-07 Score=65.06 Aligned_cols=120 Identities=9% Similarity=0.000 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017743 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 234 (366)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 234 (366)
+...+..+...+...|+++.|...+++..... +.+...+..+...+...|++++|...++...... +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34556666667777777777777777776642 3356666677777777777777777777776653 334566677777
Q ss_pred HhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 017743 235 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277 (366)
Q Consensus 235 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 277 (366)
++...|++++|...|+...+..+. +...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 777777777777777777665433 556666666666665553
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.77 E-value=2.7e-07 Score=65.30 Aligned_cols=98 Identities=6% Similarity=0.043 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (366)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3334444444444444444444444444331 1234444444444444445555555444444432 2234444444555
Q ss_pred hhccCcHHHHHHHHHHHHhC
Q 017743 236 YGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~ 255 (366)
+...|++++|...|+...+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 55555555555555554443
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.77 E-value=4.7e-07 Score=75.52 Aligned_cols=130 Identities=14% Similarity=-0.035 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC
Q 017743 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS--------------FITYECIITMYGYCDNVSRAREIFDELSKLGK 257 (366)
Q Consensus 192 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 257 (366)
..+..+...+.+.|++++|...|++..+...... ...|..+..++.+.|++++|...++...+..+
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444455555555555555555555554321111 46777888888888888888888888887754
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHH-HHHHHHHH
Q 017743 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV-QKLLKRME 323 (366)
Q Consensus 258 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a-~~~~~~m~ 323 (366)
. +...|..+..+|...|++++|...|++..+... .+...+..+...+...|+.++| ...++.|.
T Consensus 228 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 N-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 677888888888888888888888888887642 3677788888888888888877 44555554
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.75 E-value=1.3e-07 Score=72.58 Aligned_cols=154 Identities=10% Similarity=0.014 Sum_probs=77.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHhcCcHh
Q 017743 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS----KE-KPTLPTFNSMIINYGKARLQG 208 (366)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~ 208 (366)
.|++++|.++++.+... ......++..+...+...|++++|...+++.... +. .....++..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 44555555533332221 1123444455555555555555555555554431 11 112334555555566666666
Q ss_pred HHHHHHHHHHhC----CCCC--CHHHHHHHHHHhhccCcHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCh
Q 017743 209 KAEYVFQKMTAM----KYTP--SFITYECIITMYGYCDNVSRAREIFDELSKL----GKD-MKVSTLNAMLEAYCMNGLP 277 (366)
Q Consensus 209 ~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~ 277 (366)
+|...+++..+. +-.+ ....+..+...+...|++++|...+++..+. +.. ....++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666554432 1011 1234556666666677777777776665432 110 0123356667777777888
Q ss_pred hHHHHHHHHhh
Q 017743 278 TEADLLFENSH 288 (366)
Q Consensus 278 ~~a~~~~~~~~ 288 (366)
++|...+++..
T Consensus 164 ~~A~~~~~~al 174 (203)
T 3gw4_A 164 LEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87777776654
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.74 E-value=3.1e-07 Score=76.67 Aligned_cols=130 Identities=11% Similarity=-0.020 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT--------------LPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
...+..+...+.+.|++++|...|++.+....... ...|..+..++.+.|++++|...+++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44555666666666777777777766666432221 4677777788888888888888888877764
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHh
Q 017743 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA-DLLFENS 287 (366)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~~ 287 (366)
+.+...|..+..++...|++++|...|+...+..+. +...+..+..++...|+.++| ..++..|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788888888888888888888888776544 567777778888888887777 3455544
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.71 E-value=1.1e-07 Score=69.04 Aligned_cols=99 Identities=13% Similarity=0.016 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017743 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269 (366)
Q Consensus 190 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 269 (366)
+...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+.....++. +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 34455566667777777777777777776654 445667777777777777777777777777766544 5667777777
Q ss_pred HHHhcCChhHHHHHHHHhhhC
Q 017743 270 AYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~~ 290 (366)
+|...|++++|...|+...+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777778888887777777654
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.69 E-value=6.4e-07 Score=62.87 Aligned_cols=95 Identities=11% Similarity=-0.100 Sum_probs=46.4
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 307 (366)
.+..+...+...|++++|...|+...+..+. +...|..+..++...|++++|+..+++..+.+. .+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 3344444444555555555555554444322 344455555555555555555555555544331 13444555555555
Q ss_pred hhchHHHHHHHHHHHHh
Q 017743 308 KANMKELVQKLLKRMEQ 324 (366)
Q Consensus 308 ~~~~~~~a~~~~~~m~~ 324 (366)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555443
No 148
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.68 E-value=1.7e-07 Score=67.47 Aligned_cols=95 Identities=11% Similarity=-0.039 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 272 (366)
.+..+...+.+.|++++|...|+...... +.+...|..+..++...|++++|...|+.....++. +...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 33344444555555555555555555443 234445555555555555555555555555554333 3444555555555
Q ss_pred hcCChhHHHHHHHHhhh
Q 017743 273 MNGLPTEADLLFENSHN 289 (366)
Q Consensus 273 ~~g~~~~a~~~~~~~~~ 289 (366)
..|++++|...|+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555444
No 149
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.66 E-value=2e-06 Score=68.56 Aligned_cols=125 Identities=8% Similarity=-0.100 Sum_probs=56.1
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHhhcc
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS--FITYECIITMYGYC 239 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 239 (366)
+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 3444555555555555555554422 222133333334455555555555554333221 110 12344444555555
Q ss_pred CcHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 240 DNVSRAREIFDELSKLGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
|++++|+..|++.......|. .........++.+.|+.++|..+|+++..
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555555555543221121 22334444445555555555555555544
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.66 E-value=1.3e-06 Score=69.65 Aligned_cols=192 Identities=9% Similarity=-0.068 Sum_probs=130.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHhccCChhHHHHHHHHHHh------------cCCC-----
Q 017743 133 KNGMIKEMESVLSRMKSNQCKPDIITFNLL-------IDSYGKRQAFDKMEQVFKSLMH------------SKEK----- 188 (366)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~------------~~~~----- 188 (366)
..++...|.+.|.++.+.... ....|..+ ...+...++..+++..+..-.. .|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 356666666666666655322 34455544 3334444444444444444333 1110
Q ss_pred ---CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC--HHH
Q 017743 189 ---PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK--VST 263 (366)
Q Consensus 189 ---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 263 (366)
.-..........+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 012334456777889999999999999888654 544466666678889999999999998655432 111 346
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCC
Q 017743 264 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPD--SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 330 (366)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~ 330 (366)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++... .|+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~ 240 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE 240 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 77889999999999999999999875433254 346777888899999999999999999984 466
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.64 E-value=2.2e-06 Score=58.89 Aligned_cols=93 Identities=12% Similarity=-0.030 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 017743 195 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 274 (366)
Q Consensus 195 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 274 (366)
..+...+...|++++|...++...... +.+...+..+..++...|++++|...++...+..+. +...+..+..++...
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHH
Confidence 333344444444444444444444332 223334444444444444444444444444443222 334444444444444
Q ss_pred CChhHHHHHHHHhhh
Q 017743 275 GLPTEADLLFENSHN 289 (366)
Q Consensus 275 g~~~~a~~~~~~~~~ 289 (366)
|++++|...+++..+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 444444444444443
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.63 E-value=1.2e-06 Score=61.41 Aligned_cols=96 Identities=8% Similarity=-0.127 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 272 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 272 (366)
.+......+.+.|++++|...|++..+.. +.+...|..+..++...|++++|...++...+.++. +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 34445555566666666666666655543 334556666666666666666666666666665433 4556666666666
Q ss_pred hcCChhHHHHHHHHhhhC
Q 017743 273 MNGLPTEADLLFENSHNM 290 (366)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~ 290 (366)
..|++++|...|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 666666666666665543
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.62 E-value=2.7e-06 Score=58.48 Aligned_cols=96 Identities=13% Similarity=0.009 Sum_probs=47.3
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 237 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (366)
.+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444444455555555555555554431 2234444445555555555555555555554432 223444555555555
Q ss_pred ccCcHHHHHHHHHHHHhC
Q 017743 238 YCDNVSRAREIFDELSKL 255 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~ 255 (366)
..|++++|...++...+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 555555555555555544
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.61 E-value=1.6e-06 Score=66.23 Aligned_cols=97 Identities=13% Similarity=0.047 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 017743 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306 (366)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 306 (366)
..+..+..++...|++++|...++...+.... +...+..+..+|...|++++|...|++..+... -+...+..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHH
Confidence 56777777788888888888888887776543 677788888888888888888888888777542 2566777777777
Q ss_pred HhhchHHHHH-HHHHHHHhC
Q 017743 307 TKANMKELVQ-KLLKRMEQN 325 (366)
Q Consensus 307 ~~~~~~~~a~-~~~~~m~~~ 325 (366)
...++.+++. ..+..|...
T Consensus 167 ~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 7777776666 445555443
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.61 E-value=1.1e-06 Score=61.90 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=45.1
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC--CCC----HHHHHHH
Q 017743 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV--TPD----SSTYKLL 302 (366)
Q Consensus 229 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~~~l 302 (366)
+..+...+.+.|++++|+..|+...+..+. +...|..+..+|...|++++|++.+++.++.+. .++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 344444455555555555555555444332 344455555555555555555555554443210 111 1234444
Q ss_pred HHHHHhhchHHHHHHHHHHHHh
Q 017743 303 YKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 303 ~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
..++...|++++|++.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4555555555555555555544
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.58 E-value=1.2e-06 Score=63.06 Aligned_cols=95 Identities=9% Similarity=-0.061 Sum_probs=51.0
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 307 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 307 (366)
.+..+...+...|++++|...|+.+...++. +...|..+..++...|++++|...|++....+. .+...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHH
Confidence 3444444555555555555555555554433 455555555555555555555555555555432 24445555555555
Q ss_pred hhchHHHHHHHHHHHHh
Q 017743 308 KANMKELVQKLLKRMEQ 324 (366)
Q Consensus 308 ~~~~~~~a~~~~~~m~~ 324 (366)
..|++++|...|++..+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555544
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.56 E-value=0.00014 Score=59.66 Aligned_cols=187 Identities=5% Similarity=0.009 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc-HhHHHHH
Q 017743 137 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ--AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL-QGKAEYV 213 (366)
Q Consensus 137 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~ 213 (366)
+++++.+++.+..... -+..+|+.-...+...+ ++++++.+++.+.+.. +-+..+|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 3455555555554432 24455544444444444 2555555555555542 2245555544444445554 3555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhhcc--------------CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----
Q 017743 214 FQKMTAMKYTPSFITYECIITMYGYC--------------DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN----- 274 (366)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 274 (366)
+..+++.. +-|...|+.....+... +.++++++.+.......+. |...|+-+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence 55555543 33444444433333322 3466667777666665544 666665444444333
Q ss_pred ------CChhHHHHHHHHhhhCCCCCCHHHHHHHHHH-----HHhhchHHHHHHHHHHHHhCCCCCChh
Q 017743 275 ------GLPTEADLLFENSHNMGVTPDSSTYKLLYKA-----YTKANMKELVQKLLKRMEQNGIVPNKR 332 (366)
Q Consensus 275 ------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~~g~~~~~~ 332 (366)
+.++++++.++++.+. .||. .|..+..+ ....|..+++..++.++.+ +.|...
T Consensus 246 ~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~ 309 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRA 309 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGH
T ss_pred cchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchh
Confidence 3466777777777764 3443 23222111 1234666777788888876 445443
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.56 E-value=1.8e-06 Score=66.01 Aligned_cols=88 Identities=13% Similarity=0.009 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017743 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271 (366)
Q Consensus 192 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 271 (366)
..+..+..++...|++++|...++...+.. +.+...+..+..++...|++++|...|+...+..+. +...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 455566666666777777777776666553 344566666667777777777777777776665433 455666666666
Q ss_pred HhcCChhHHH
Q 017743 272 CMNGLPTEAD 281 (366)
Q Consensus 272 ~~~g~~~~a~ 281 (366)
...++.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 6655555554
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.56 E-value=8e-06 Score=57.98 Aligned_cols=98 Identities=9% Similarity=-0.079 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017743 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269 (366)
Q Consensus 190 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 269 (366)
+...+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...++...+..+. +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 34445555555555555555555555555443 233455555555555555555555555555554333 4555555555
Q ss_pred HHHhcCChhHHHHHHHHhhh
Q 017743 270 AYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~ 289 (366)
++...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 56666666666655555543
No 160
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.56 E-value=0.0002 Score=58.82 Aligned_cols=185 Identities=9% Similarity=-0.054 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-hhHHHHH
Q 017743 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNG--MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA-FDKMEQV 178 (366)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~ 178 (366)
+++++.+++.+.... +-+..+|+.-..++.+.+ .+++++.+++.+.+.... |...|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 345555555555543 224455555544454444 255666666665554322 55555554444444555 3556666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhc--------------CcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc-----
Q 017743 179 FKSLMHSKEKPTLPTFNSMIINYGKA--------------RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC----- 239 (366)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 239 (366)
++.+++..+ -|...|+.....+... +.++++++.+....... +-|...|+.+-..+...
T Consensus 168 ~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 666555432 2455555444443333 34566666666666543 44455555443333333
Q ss_pred ------CcHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHhcCChhHHHHHHHHhhhCC
Q 017743 240 ------DNVSRAREIFDELSKLGKDMKVSTLNAMLE---AYCMNGLPTEADLLFENSHNMG 291 (366)
Q Consensus 240 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~a~~~~~~~~~~~ 291 (366)
+.++++++.++++.+..+. +.-.+..++. +....|..+++...+.++.+.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4577888888888876543 2222222221 1113466667777888777654
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.56 E-value=1.8e-06 Score=60.69 Aligned_cols=95 Identities=12% Similarity=0.088 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC--CC----HHHHHHH
Q 017743 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD--MK----VSTLNAM 267 (366)
Q Consensus 194 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 267 (366)
+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..++...+.++. ++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344444555555555555555554432 223444555555555555555555555554432111 00 1244555
Q ss_pred HHHHHhcCChhHHHHHHHHhhh
Q 017743 268 LEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~~~~ 289 (366)
..++...|++++|++.|++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5566666666666666666554
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.55 E-value=2.3e-06 Score=63.19 Aligned_cols=100 Identities=10% Similarity=-0.056 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017743 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269 (366)
Q Consensus 190 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 269 (366)
+...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|...|+...+..+. +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45567777778888888888888888887764 446777888888888888888888888888877544 6777888888
Q ss_pred HHHhcCChhHHHHHHHHhhhCC
Q 017743 270 AYCMNGLPTEADLLFENSHNMG 291 (366)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~~~ 291 (366)
+|...|++++|...|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 8888888888888888877653
No 163
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.54 E-value=1.8e-06 Score=58.73 Aligned_cols=91 Identities=4% Similarity=-0.128 Sum_probs=35.9
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC--CHHHHHHHHHHhhcc
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP--SFITYECIITMYGYC 239 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 239 (366)
+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+..++...
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHH
Confidence 3333444444444444444443321 1123333334444444444444444444444332 11 233344444444444
Q ss_pred -CcHHHHHHHHHHHHh
Q 017743 240 -DNVSRAREIFDELSK 254 (366)
Q Consensus 240 -~~~~~a~~~~~~~~~ 254 (366)
|++++|.+.++....
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 90 EGKEVEAEIAEARAKL 105 (112)
T ss_dssp SSCSHHHHHHHHHHGG
T ss_pred hCCHHHHHHHHHHHhh
Confidence 444444444444433
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.54 E-value=2.9e-06 Score=60.34 Aligned_cols=101 Identities=9% Similarity=-0.092 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHH
Q 017743 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302 (366)
Q Consensus 223 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 302 (366)
+.+...+..+...+...|++++|...|+......+. +...|..+..++...|++++|...+++..+.+. .+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 346788899999999999999999999999987654 688999999999999999999999999988753 378899999
Q ss_pred HHHHHhhchHHHHHHHHHHHHhC
Q 017743 303 YKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 303 ~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
..++...|++++|...|++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999998863
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.54 E-value=1.6e-06 Score=60.92 Aligned_cols=95 Identities=11% Similarity=0.101 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC--CC----HHHHHHH
Q 017743 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD--MK----VSTLNAM 267 (366)
Q Consensus 194 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 267 (366)
+..+...+...|+++.|...+++..... +.+...+..+...+...|++++|...++...+.... ++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3344444444455555555554444432 223444444444455555555555555544433211 11 3444555
Q ss_pred HHHHHhcCChhHHHHHHHHhhh
Q 017743 268 LEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~~~~ 289 (366)
...+...|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 5555555555555555555554
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=7e-06 Score=59.05 Aligned_cols=97 Identities=9% Similarity=-0.101 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHH
Q 017743 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMK---VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 302 (366)
Q Consensus 226 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 302 (366)
...+..+...+...|++++|...|+...+.... + ...+..+..+|...|++++|...+++..+.. +.+...+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 444555555555555555555555555543221 1 4455555555556666666666665555442 1245555555
Q ss_pred HHHHHhhchHHHHHHHHHHHHh
Q 017743 303 YKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 303 ~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
..++...|++++|...|++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5566666666666666666555
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.52 E-value=5.7e-06 Score=60.98 Aligned_cols=98 Identities=8% Similarity=-0.007 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (366)
...+..+...+...|++++|+..|++.+... +.+...|..+..+|...|++++|...+++..+.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445555555555555555555555555532 2245555555555555555555555555555543 2334555555555
Q ss_pred hhccCcHHHHHHHHHHHHhC
Q 017743 236 YGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~ 255 (366)
+...|++++|...|+...+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 55555555555555555543
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.52 E-value=3.1e-06 Score=57.57 Aligned_cols=99 Identities=10% Similarity=-0.118 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP--DIITFNLL 162 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 162 (366)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 34456666667777777777777777776653 2355666666777777777777777777776652 22 45666667
Q ss_pred HHHHhcc-CChhHHHHHHHHHHhc
Q 017743 163 IDSYGKR-QAFDKMEQVFKSLMHS 185 (366)
Q Consensus 163 ~~~~~~~-~~~~~a~~~~~~~~~~ 185 (366)
..++... |++++|.+.++.....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7777777 7777777777777664
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=5.8e-06 Score=59.49 Aligned_cols=21 Identities=5% Similarity=-0.088 Sum_probs=8.1
Q ss_pred HHHHHhccCChhHHHHHHHHH
Q 017743 162 LIDSYGKRQAFDKMEQVFKSL 182 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~ 182 (366)
+...+...|++++|...|++.
T Consensus 34 ~a~~~~~~~~~~~A~~~~~~a 54 (148)
T 2dba_A 34 EGNELFKCGDYGGALAAYTQA 54 (148)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 333333333333333333333
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.51 E-value=7.4e-06 Score=70.85 Aligned_cols=164 Identities=8% Similarity=-0.089 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHhccCChhHHHHHHHHHHhc----CCCC-CHHH
Q 017743 124 YNGVMDAYGKNGMIKEMESVLSRMKSNQC-KPDI----ITFNLLIDSYGKRQAFDKMEQVFKSLMHS----KEKP-TLPT 193 (366)
Q Consensus 124 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 193 (366)
+..+...|...|++++|.+.+..+...-. .++. .+.+.+...+...|+++.+..+++..... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 34455555555555555555554432100 0011 11222223333445555555555544321 1111 1334
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHHHhC---CCCC---CHH
Q 017743 194 FNSMIINYGKARLQGKAEYVFQKMTAM----KYTP-SFITYECIITMYGYCDNVSRAREIFDELSKL---GKDM---KVS 262 (366)
Q Consensus 194 ~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~---~~~ 262 (366)
+..+...+...|++++|..+++.+... +-.+ ...++..++..|...|++++|..+++..... ...| -..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 445555555555555555555554321 1011 1234555555555555555555555544321 0111 012
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 263 TLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
.+..+...+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344444444555555555444433
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.51 E-value=2.6e-06 Score=59.26 Aligned_cols=93 Identities=10% Similarity=-0.039 Sum_probs=63.1
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhh
Q 017743 230 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 309 (366)
Q Consensus 230 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 309 (366)
..+...+...|++++|...|+...+..+. +...|..+..++...|++++|+..|++..+.... +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 34455566677777777777777766544 5666777777777777777777777777665422 566667777777777
Q ss_pred chHHHHHHHHHHHHh
Q 017743 310 NMKELVQKLLKRMEQ 324 (366)
Q Consensus 310 ~~~~~a~~~~~~m~~ 324 (366)
|++++|...+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777777665
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=1.3e-05 Score=69.36 Aligned_cols=167 Identities=8% Similarity=-0.091 Sum_probs=119.3
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CCHH----HHHHHHHHHHhcCcHhHHHHHHHHHHh----CCCCCC-HH
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLP----TFNSMIINYGKARLQGKAEYVFQKMTA----MKYTPS-FI 227 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~ 227 (366)
.+..+...|...|++++|.+.+..+...-.. ++.. +.+.+-..+...|+++.+..+++.... .+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 3567889999999999999999987653111 1221 222333334456889999999887653 232333 56
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC--CCC-C-C--H
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKL----GK-DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM--GVT-P-D--S 296 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~-p-~--~ 296 (366)
++..+...+...|++++|..+++.+... +. .....++..++..|...|++++|..++++.... .+. | . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7888999999999999999999987643 11 113567888999999999999999999887642 111 2 1 2
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 297 STYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
..+..+...+...|++++|...|.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4566666777888999999988877754
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.44 E-value=4.1e-06 Score=58.78 Aligned_cols=98 Identities=9% Similarity=0.124 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC--KPD----IITFN 160 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 160 (366)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456666677777777777777777776653 33556666667777777777777777776655421 111 45566
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhc
Q 017743 161 LLIDSYGKRQAFDKMEQVFKSLMHS 185 (366)
Q Consensus 161 ~l~~~~~~~~~~~~a~~~~~~~~~~ 185 (366)
.+..++...|++++|.+.|+.....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6666666677777777777666663
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.42 E-value=3e-06 Score=58.92 Aligned_cols=92 Identities=8% Similarity=-0.071 Sum_probs=51.8
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 017743 196 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 275 (366)
Q Consensus 196 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 275 (366)
.+...+.+.|++++|...+++..+.. +.+...|..+..++...|++++|...|++..+..+. +...+..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 34444555566666666666555543 234555555555566666666666666665555433 4555555566666666
Q ss_pred ChhHHHHHHHHhhh
Q 017743 276 LPTEADLLFENSHN 289 (366)
Q Consensus 276 ~~~~a~~~~~~~~~ 289 (366)
++++|...+++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665554
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.39 E-value=4.4e-06 Score=73.13 Aligned_cols=117 Identities=9% Similarity=0.002 Sum_probs=50.5
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHH
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 245 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 245 (366)
+.+.|++++|.+.|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..++...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 334444555555555444431 1234444445555555555555555555544442 22344444455555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 017743 246 REIFDELSKLGKDMKVSTLNAMLEA--YCMNGLPTEADLLFE 285 (366)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 285 (366)
.+.|++..+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555554443222 22233333333 444455555555544
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.35 E-value=1.4e-05 Score=69.62 Aligned_cols=132 Identities=14% Similarity=0.017 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 017743 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS--------------FITYECIITMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 191 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
...+..+...+.+.|++++|...|++..+...... ...|..+..++.+.|++++|...++...+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34566666777777777777777777765421111 4778888889999999999999999988876
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHH-HHHHHHh
Q 017743 257 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK-LLKRMEQ 324 (366)
Q Consensus 257 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~-~~~~m~~ 324 (366)
+. +...|..+..+|...|++++|...|++..+... -+...+..+..++.+.++.+++.+ .++.|..
T Consensus 348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55 788888999999999999999999999888642 256678888888888888877653 4555543
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.35 E-value=1.3e-05 Score=67.74 Aligned_cols=123 Identities=11% Similarity=-0.040 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAM---------------KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK 257 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 257 (366)
.+..+...+.+.|++++|...|++..+. ..+.+...|..+..++.+.|++++|...++...+..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 3555666677777777777777776651 0122356788888889999999999999999988765
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHH
Q 017743 258 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317 (366)
Q Consensus 258 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 317 (366)
. +...|..+..+|...|++++|...|++..+... .+...+..+...+...++.+++.+
T Consensus 305 ~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 S-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 678888899999999999999999999887642 267777777777777777776654
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.34 E-value=2.2e-05 Score=54.99 Aligned_cols=90 Identities=14% Similarity=0.037 Sum_probs=40.8
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhCCCCCCH---HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 017743 198 IINYGKARLQGKAEYVFQKMTAMKYTPSF---ITYECIITMYGYCDNVSRAREIFDELSKLGKDMK---VSTLNAMLEAY 271 (366)
Q Consensus 198 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~ 271 (366)
...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...|+.+.+..+. + ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHH
Confidence 344444555555555555544432 1111 24444444445555555555555554443322 1 33344444444
Q ss_pred HhcCChhHHHHHHHHhhh
Q 017743 272 CMNGLPTEADLLFENSHN 289 (366)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~ 289 (366)
...|++++|...|+.+.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 455555555555554444
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.34 E-value=2.1e-06 Score=75.18 Aligned_cols=120 Identities=13% Similarity=-0.026 Sum_probs=96.8
Q ss_pred HHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 017743 198 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277 (366)
Q Consensus 198 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 277 (366)
...+.+.|++++|...+++..+.. +.+...|..+..++.+.|++++|...+++..+..+. +...+..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 345567899999999999998874 445889999999999999999999999999998654 788999999999999999
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHHH--HHhhchHHHHHHHHH
Q 017743 278 TEADLLFENSHNMGVTPDSSTYKLLYKA--YTKANMKELVQKLLK 320 (366)
Q Consensus 278 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~ 320 (366)
++|.+.+++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999876422 34455555555 888999999999988
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.33 E-value=1.8e-06 Score=59.64 Aligned_cols=84 Identities=10% Similarity=-0.008 Sum_probs=38.8
Q ss_pred CcHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHH
Q 017743 240 DNVSRAREIFDELSKLGK--DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317 (366)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 317 (366)
|++++|...|+...+.+. +-+...+..+..+|...|++++|...|++..+.... +...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 444445555555444320 112344444555555555555555555555544321 34445555555555555555555
Q ss_pred HHHHHHh
Q 017743 318 LLKRMEQ 324 (366)
Q Consensus 318 ~~~~m~~ 324 (366)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.32 E-value=8.5e-06 Score=70.99 Aligned_cols=131 Identities=12% Similarity=0.024 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT--------------LPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
...+..+...+.+.|++++|...|++.+....... ...|..+..+|.+.|++++|+..+++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 33455555666666666666666666655322211 4667777778888888888888888877764
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHhh
Q 017743 222 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD-LLFENSH 288 (366)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~ 288 (366)
+.+...|..+..+|...|++++|...|+...+..+. +...+..+..++...++.+++. .++..|.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777888888888888888888888776544 5566777777777777777665 3444443
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.32 E-value=1e-05 Score=59.43 Aligned_cols=99 Identities=11% Similarity=-0.039 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhC-------CC----------CCCHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 017743 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAM-------KY----------TPSFITYECIITMYGYCDNVSRAREIFDELS 253 (366)
Q Consensus 191 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 253 (366)
...+......+.+.|++++|...|.+.... .- +.+...|..+..++.+.|++++|...++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566666777777777777777776653 00 1112344555555555555555555555555
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 254 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
+.++. +...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 54332 4455555555555555555555555555543
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.31 E-value=5e-06 Score=60.75 Aligned_cols=131 Identities=11% Similarity=0.034 Sum_probs=71.8
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhCCC---CCC--HHHHHHHHHHhhccCcHHHHHHHHHHHHhCC----CC-CCHHH
Q 017743 194 FNSMIINYGKARLQGKAEYVFQKMTAMKY---TPS--FITYECIITMYGYCDNVSRAREIFDELSKLG----KD-MKVST 263 (366)
Q Consensus 194 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~ 263 (366)
+..+...+...|++++|...+++..+... .+. ..++..+...+...|++++|...++...+.. .. .....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34444444455555555555544432210 000 1345555566666666666666666544321 00 01345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhC----CCC-CCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 264 LNAMLEAYCMNGLPTEADLLFENSHNM----GVT-PDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
+..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566666777777777777777665532 111 1134566777778888888888888877654
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.30 E-value=7.9e-06 Score=59.67 Aligned_cols=97 Identities=11% Similarity=0.026 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILA-PD----IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ----CKP-DI 156 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 156 (366)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+.. ..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45666777777788888888887776653211 11 1345566666667777777777766654321 000 12
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHH
Q 017743 157 ITFNLLIDSYGKRQAFDKMEQVFKSLM 183 (366)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 183 (366)
..+..+...+...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344455555555666666666555543
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.30 E-value=4.1e-05 Score=53.53 Aligned_cols=92 Identities=14% Similarity=0.103 Sum_probs=40.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHH
Q 017743 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDI---ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT--LPTFNSMIINY 201 (366)
Q Consensus 127 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~ 201 (366)
+...+...|++++|...|+.+.+.... +. ..+..+..++...|++++|...|+.+....+... ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 344444555555555555554443211 11 2344444444455555555555554444321110 33344444444
Q ss_pred HhcCcHhHHHHHHHHHHh
Q 017743 202 GKARLQGKAEYVFQKMTA 219 (366)
Q Consensus 202 ~~~~~~~~a~~~~~~~~~ 219 (366)
...|++++|...|+.+.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444443
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.24 E-value=1.5e-05 Score=67.21 Aligned_cols=123 Identities=6% Similarity=-0.039 Sum_probs=91.3
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhc---------------CCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCC
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHS---------------KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 222 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 222 (366)
.+..+...+.+.|++++|++.|++.++. ..+.+..+|..+..+|.+.|++++|...+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 3555666677777777777777776651 012245677888888888999999999999888764
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 017743 223 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 282 (366)
Q Consensus 223 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 282 (366)
+.+...+..+..++...|++++|...|+...+..+. +...+..+..++...++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888888899999999999999988887544 66777777777777776666643
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.24 E-value=1.8e-05 Score=58.18 Aligned_cols=101 Identities=9% Similarity=0.012 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHhc--------CC---------CCCHHHHHHHHHHHHhcCcHhHHHHHHHHH
Q 017743 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHS--------KE---------KPTLPTFNSMIINYGKARLQGKAEYVFQKM 217 (366)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 217 (366)
....+......+.+.|++++|+..|.+.+.. .. +.+...|..+..+|.+.|++++|...+...
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456667777788888888888888887664 00 112356777777888888888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 017743 218 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
++.. +.+...|..+..++...|++++|...|+...+..
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 7764 4456778888888888888888888888887764
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.24 E-value=3.3e-06 Score=58.32 Aligned_cols=59 Identities=8% Similarity=-0.058 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 017743 194 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253 (366)
Q Consensus 194 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 253 (366)
+..+..++...|++++|...+++..+.. +-+...+..+..++...|++++|...++...
T Consensus 30 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 30 YLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333334444444444444444443332 1223333334444444444444444444333
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.22 E-value=0.00013 Score=51.89 Aligned_cols=112 Identities=10% Similarity=-0.005 Sum_probs=74.8
Q ss_pred CcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHH
Q 017743 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM----NGLPTEA 280 (366)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a 280 (366)
+++++|..+|++..+.+ .|+.. +...|...+.+++|.+.|+...+.| ++..+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35666777777766665 33333 5556666666677777777776664 56666667777766 6677777
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHh----hchHHHHHHHHHHHHhCCC
Q 017743 281 DLLFENSHNMGVTPDSSTYKLLYKAYTK----ANMKELVQKLLKRMEQNGI 327 (366)
Q Consensus 281 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~ 327 (366)
.++|++..+.| +...+..|...|.. .++.++|.++|++..+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777777654 55666667777766 6777777777777777653
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.21 E-value=6.7e-06 Score=68.56 Aligned_cols=149 Identities=9% Similarity=-0.074 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017743 156 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 235 (366)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (366)
...+..+...+.+.|++++|...|++.+.. .|+... +...++..++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 344566677778888888888888887663 233221 112233333322211 1367777788
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHhhchHHH
Q 017743 236 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA-YTKANMKEL 314 (366)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~ 314 (366)
+.+.|++++|...++...+.... +...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888776543 6777888888888888888888888888765321 34444444444 234456677
Q ss_pred HHHHHHHHHhC
Q 017743 315 VQKLLKRMEQN 325 (366)
Q Consensus 315 a~~~~~~m~~~ 325 (366)
+...|..|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77788777653
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.16 E-value=9.7e-06 Score=67.61 Aligned_cols=125 Identities=7% Similarity=-0.096 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017743 192 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271 (366)
Q Consensus 192 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 271 (366)
..+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 34555666677778888888888877754 243321 233444444433221 24788899999
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 017743 272 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 338 (366)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 338 (366)
.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++..+ +.|+.......+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L 304 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRREL 304 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHH
Confidence 99999999999999998865 33788999999999999999999999999876 345544333333
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.16 E-value=0.00083 Score=60.02 Aligned_cols=166 Identities=8% Similarity=-0.027 Sum_probs=117.7
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc----------HhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC
Q 017743 171 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL----------QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 240 (366)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 240 (366)
..++|++.++.++..++ .+..+|+.--..+...++ ++++...++.+.+.. +-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 34566777777777532 245566655555555555 788888888888765 456777777777777777
Q ss_pred --cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhh--------
Q 017743 241 --NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA-------- 309 (366)
Q Consensus 241 --~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------- 309 (366)
+++++.+.++.+.+..+. +..+|+.-...+.+.| .++++++.++++.+..+. |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 668888888888888766 7888888777777888 788888888888887654 778888777776663
Q ss_pred ------chHHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 017743 310 ------NMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342 (366)
Q Consensus 310 ------~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 342 (366)
+.++++++.+++..+. .|+........+.+.
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll 236 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLL 236 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHH
Confidence 6788899998888873 455443333333333
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.15 E-value=0.00029 Score=62.98 Aligned_cols=173 Identities=6% Similarity=-0.050 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-
Q 017743 102 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM----------IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ- 170 (366)
Q Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 170 (366)
.++|.+.+++++.... -+..+|+.--.++...|+ ++++++.++.+.+...+ +..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 4677888888877642 245566666666665555 78888888888776543 6777777777777777
Q ss_pred -ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc---------
Q 017743 171 -AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR-LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--------- 239 (366)
Q Consensus 171 -~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 239 (366)
+++++++.++++.+... -+..+|+.-...+.+.| .++++.+.+.++++.. +-+...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 66888888888888643 37777877777777777 7888888888887765 44566776665555442
Q ss_pred -----CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 017743 240 -----DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279 (366)
Q Consensus 240 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 279 (366)
+.++++.+.++......+. +...|..+-..+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5678999999998887665 78888888888877776444
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.11 E-value=0.00011 Score=52.85 Aligned_cols=62 Identities=10% Similarity=-0.060 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhC-----CCCC-CHHHH----HHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 263 TLNAMLEAYCMNGLPTEADLLFENSHNM-----GVTP-DSSTY----KLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p-~~~~~----~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
.|..+..++.+.|++++|+..+++.++. .+.| +...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5566666666666666666666665553 0123 34455 6666667777777777777776653
No 195
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.08 E-value=2.3e-05 Score=56.31 Aligned_cols=85 Identities=11% Similarity=-0.043 Sum_probs=46.8
Q ss_pred hcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcH----------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 017743 203 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV----------SRAREIFDELSKLGKDMKVSTLNAMLEAYC 272 (366)
Q Consensus 203 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 272 (366)
+.+.+++|...++...+.. +.+...|..+..++...+++ ++|+..|++..+.++. +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 4455666666666666554 44556666666666665543 3555555555555443 4555555555555
Q ss_pred hcC-----------ChhHHHHHHHHhhh
Q 017743 273 MNG-----------LPTEADLLFENSHN 289 (366)
Q Consensus 273 ~~g-----------~~~~a~~~~~~~~~ 289 (366)
..| ++++|++.|++..+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 543 44455555554444
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.05 E-value=8.8e-05 Score=53.42 Aligned_cols=61 Identities=13% Similarity=-0.050 Sum_probs=48.3
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhC-------CCCCCHHHH----HHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKL-------GKDMKVSTL----NAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
.|..+..++.+.|++++|+..++...+. ++. +...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7777778888888888888888887775 443 55677 7888888899999999999888764
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.04 E-value=4.4e-05 Score=66.58 Aligned_cols=126 Identities=6% Similarity=-0.044 Sum_probs=95.5
Q ss_pred HHHhcCcHhHHHHHHHHHHhC-----C-CCC-CHHHHHHHHHHhhccCcHHHHHHHHHHHHhC-----CCC-C-CHHHHH
Q 017743 200 NYGKARLQGKAEYVFQKMTAM-----K-YTP-SFITYECIITMYGYCDNVSRAREIFDELSKL-----GKD-M-KVSTLN 265 (366)
Q Consensus 200 ~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~ 265 (366)
.+...|++++|+.++++..+. | -.| ...+++.|..+|...|++++|..++++..+. |.. | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999999887643 1 112 2468899999999999999999999887642 221 2 346688
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhh-----CCCC-CC-HHHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 266 AMLEAYCMNGLPTEADLLFENSHN-----MGVT-PD-SSTYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 266 ~li~~~~~~g~~~~a~~~~~~~~~-----~~~~-p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
.|...|...|++++|+.++++..+ .|.. |+ ..+...+-.++...+++++|..+|.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988753 2321 22 345567777888999999999999999763
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.02 E-value=6.7e-05 Score=51.33 Aligned_cols=78 Identities=10% Similarity=-0.001 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 210 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 210 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
+...+++..+.. +.+...+..+...+...|++++|...|+...+..+. +...|..+..++...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444432 233445555555555555555555555555554332 344555555555555555555555555543
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.00 E-value=0.00035 Score=49.58 Aligned_cols=111 Identities=14% Similarity=0.015 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHH
Q 017743 64 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK----NGMIKE 139 (366)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~ 139 (366)
.+.++|+++|++..+.. .|+.. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC--CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 44666666666665421 22222 4455555555666666666666553 45555566666655 566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHHhcC
Q 017743 140 MESVLSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQVFKSLMHSK 186 (366)
Q Consensus 140 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 186 (366)
|.+.|++..+.| +...+..+...|.. .+++++|.+.|++..+.|
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 666666666553 44455555555555 556666666666655543
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.96 E-value=3.6e-05 Score=67.17 Aligned_cols=125 Identities=3% Similarity=-0.046 Sum_probs=95.7
Q ss_pred HHhccCChhHHHHHHHHHHhcC---CCC----CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC-----C-CCCC-HHHHH
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSK---EKP----TLPTFNSMIINYGKARLQGKAEYVFQKMTAM-----K-YTPS-FITYE 230 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~ 230 (366)
.+...|++++|+.++++.++.. ..+ ...+++.+...|...|++++|..++++..+. | -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3567899999999998876531 112 2467899999999999999999999887643 2 1233 46789
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHh-----CCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 231 CIITMYGYCDNVSRAREIFDELSK-----LGKD-M-KVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 231 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
.|...|...|++++|..++++..+ .|.. | ...+.+.+-.++...+.+++|+.++..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988764 2432 1 234456677788889999999999998865
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.96 E-value=1.3e-05 Score=54.37 Aligned_cols=57 Identities=9% Similarity=-0.002 Sum_probs=21.8
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 017743 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 197 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (366)
+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++...+
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 10 QGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3333333444444444443333322 22233333333444444444444444444333
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.89 E-value=8.5e-05 Score=50.22 Aligned_cols=65 Identities=12% Similarity=-0.066 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 225 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
+...+..+...+...|++++|...|+...+..+. +...+..+..++...|++++|+..+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3455666667777777777777777777766443 5666777777777777777777777777664
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.87 E-value=0.00024 Score=45.91 Aligned_cols=79 Identities=14% Similarity=0.115 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 017743 227 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 306 (366)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 306 (366)
..+..+...+...|++++|...++...+..+. +...+..+..++...|++++|...+++..+... .+...+..+...+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 34455555555555666666655555554322 445555555566666666666666665555431 2344444444443
Q ss_pred H
Q 017743 307 T 307 (366)
Q Consensus 307 ~ 307 (366)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.87 E-value=5.3e-05 Score=54.44 Aligned_cols=102 Identities=15% Similarity=0.071 Sum_probs=61.6
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 017743 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP----------TEADLLFENSHNMGVTPDSSTYKLLYKAYT 307 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 307 (366)
+.+.+++|.+.++...+.++. +...|..+..++...+++ ++|+..|++.++.+.. +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 345566666666666665544 566666666666665543 3666666666665422 4556666666666
Q ss_pred hhc-----------hHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc
Q 017743 308 KAN-----------MKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343 (366)
Q Consensus 308 ~~~-----------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 343 (366)
..| ++++|+..|++..+ +.|+...|...++...+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHT
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHh
Confidence 553 66666666666666 45666666666655443
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.85 E-value=0.00028 Score=48.16 Aligned_cols=80 Identities=11% Similarity=0.040 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 244 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
.|...|+...+..+. +...+..+...|...|++++|...|++..+.. +.+...|..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467778888877654 78899999999999999999999999998875 3368889999999999999999999999987
Q ss_pred hC
Q 017743 324 QN 325 (366)
Q Consensus 324 ~~ 325 (366)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.79 E-value=0.00034 Score=45.16 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 271 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 271 (366)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++...+..+. +...+..+...+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 34444444455555555555555544432 223444555555555555555555555555544322 334444444333
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.64 E-value=0.00027 Score=46.88 Aligned_cols=62 Identities=23% Similarity=0.126 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 017743 226 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 288 (366)
Q Consensus 226 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (366)
...+..+..++...|++++|...|+...+.++. +...|..+..+|...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555555555555555555555554333 34445555555555555555555555443
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.60 E-value=0.00049 Score=45.62 Aligned_cols=84 Identities=14% Similarity=0.013 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCC-CCCChhHHHHHH
Q 017743 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG-IVPNKRFFLEAL 338 (366)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll 338 (366)
+...+..+...|...|++++|+..|++..+.+.. +...|..+..+|...|++++|...|++..+.. -.++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 4455566666666666666666666666654322 44556666666666666666666666655421 123334444444
Q ss_pred HHhhcc
Q 017743 339 ETFSSS 344 (366)
Q Consensus 339 ~~~~~~ 344 (366)
..+...
T Consensus 85 ~~l~~~ 90 (100)
T 3ma5_A 85 DAKLKA 90 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 444333
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.48 E-value=0.0032 Score=52.01 Aligned_cols=74 Identities=11% Similarity=0.049 Sum_probs=44.6
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHH
Q 017743 118 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 195 (366)
Q Consensus 118 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 195 (366)
+.+..++..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 3455555555555555567777777777666653 55555556666666667777777777666663 34444443
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.47 E-value=0.0075 Score=49.87 Aligned_cols=76 Identities=12% Similarity=0.031 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 017743 153 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 232 (366)
Q Consensus 153 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 232 (366)
+.+..++..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.+++.... .|...+|...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHHH
Confidence 5578888888777777899999999999999975 78888888888899999999999999999887 5666665443
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.12 E-value=0.0024 Score=41.88 Aligned_cols=55 Identities=13% Similarity=0.017 Sum_probs=27.5
Q ss_pred HhhccCcHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 235 MYGYCDNVSRAREIFDELSKLGKDMKVS-TLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 235 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
.+...|++++|...++.+.+..+. +.. .+..+..++...|++++|...|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 334445555555555555544322 334 4555555555555555555555555543
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.05 E-value=0.044 Score=51.33 Aligned_cols=154 Identities=10% Similarity=0.049 Sum_probs=88.2
Q ss_pred HHHhcCCHHHHHH-HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChh
Q 017743 95 ACAQARNVDQVNA-LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 173 (366)
Q Consensus 95 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 173 (366)
.....+++++|.+ ++..+ ++......++..+.+.|..++|+++.+. |. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHH
Confidence 3445677777765 44111 1122236666777777887777766531 11 1123345678888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 017743 174 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 253 (366)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 253 (366)
.|.++.+.+ .+...|..+...+.+.++++.|++.|.++.. |..+...+...|+.+...++-+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 887775433 4667788888888888888888888887653 2333444444555555555544444
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 254 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 254 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
..|. ++.-..+|.+.|++++|.+++.++
T Consensus 735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 735 TTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4331 233334455566666666665544
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.04 E-value=0.0026 Score=41.74 Aligned_cols=57 Identities=9% Similarity=-0.009 Sum_probs=30.3
Q ss_pred HHHHhcCcHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 017743 199 INYGKARLQGKAEYVFQKMTAMKYTPSFI-TYECIITMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
..+...|++++|...+++..+.. +.+.. .+..+..++...|++++|...|+...+..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34445555555555555555442 22334 55555555555566666666665555543
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.00 E-value=0.005 Score=52.86 Aligned_cols=25 Identities=16% Similarity=-0.064 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHH
Q 017743 298 TYKLLYKAYTKANMKELVQKLLKRM 322 (366)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~m 322 (366)
+++.|...|...|++++|..++++.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444444444455555544444443
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.97 E-value=0.0022 Score=55.03 Aligned_cols=83 Identities=6% Similarity=-0.052 Sum_probs=39.0
Q ss_pred CcHhHHHHHHHHHHhC---CCC---CC-HHHHHHHHHHhhccCcHHHHHHHHHHHHhC-----CC-CC-CHHHHHHHHHH
Q 017743 205 RLQGKAEYVFQKMTAM---KYT---PS-FITYECIITMYGYCDNVSRAREIFDELSKL-----GK-DM-KVSTLNAMLEA 270 (366)
Q Consensus 205 ~~~~~a~~~~~~~~~~---~~~---~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~li~~ 270 (366)
|++++|+.++++..+. -+. |+ ..+++.|..+|...|++++|..++++..+. |. .| ...+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4556666665554431 011 11 244555555555555555555555554321 11 11 12334555555
Q ss_pred HHhcCChhHHHHHHHHh
Q 017743 271 YCMNGLPTEADLLFENS 287 (366)
Q Consensus 271 ~~~~g~~~~a~~~~~~~ 287 (366)
|...|++++|+.++++.
T Consensus 392 ~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 392 YMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHH
Confidence 55555555555555543
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.90 E-value=0.011 Score=38.34 Aligned_cols=65 Identities=9% Similarity=-0.025 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHhhccCc---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 225 SFITYECIITMYGYCDN---VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 225 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
+...+..+..++...++ .++|..++++..+..+. ++.....+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444432222 35555555555554433 4445555555555555555555555555543
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.90 E-value=0.009 Score=42.43 Aligned_cols=81 Identities=14% Similarity=-0.081 Sum_probs=40.3
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC---cHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHH
Q 017743 207 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD---NVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEAD 281 (366)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 281 (366)
...+.+-|.+..+.+ +++..+.-.+..++++.+ +.+++..+|+.+.+.+ .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 334444444444443 244455444555555554 4445666665555543 12 2333344444555566666666
Q ss_pred HHHHHhhh
Q 017743 282 LLFENSHN 289 (366)
Q Consensus 282 ~~~~~~~~ 289 (366)
+.++.+.+
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66665555
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.87 E-value=0.0028 Score=54.38 Aligned_cols=87 Identities=8% Similarity=-0.062 Sum_probs=68.9
Q ss_pred ccCChhHHHHHHHHHHhc---CCCCC----HHHHHHHHHHHHhcCcHhHHHHHHHHHHhC-----C-CCCC-HHHHHHHH
Q 017743 168 KRQAFDKMEQVFKSLMHS---KEKPT----LPTFNSMIINYGKARLQGKAEYVFQKMTAM-----K-YTPS-FITYECII 233 (366)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~ 233 (366)
..|++++|+.++++.++. -..|+ ..+++.+...|...|++++|+.++++..+. | -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 467899999999987653 12222 467899999999999999999999987643 2 1233 46799999
Q ss_pred HHhhccCcHHHHHHHHHHHHh
Q 017743 234 TMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~ 254 (366)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988754
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.85 E-value=0.0078 Score=51.64 Aligned_cols=92 Identities=5% Similarity=-0.066 Sum_probs=61.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHhccCChhHHHHHHHHHHhc-----C-CCCC-HHH
Q 017743 128 MDAYGKNGMIKEMESVLSRMKSNQ---CKP----DIITFNLLIDSYGKRQAFDKMEQVFKSLMHS-----K-EKPT-LPT 193 (366)
Q Consensus 128 l~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~ 193 (366)
+..+.+.|++++|+.++++..+.. +.| ...+++.+..+|...|++++|+.++++.+.. | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556678888888887776431 112 2456777777888888888888887776532 1 1222 346
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHh
Q 017743 194 FNSMIINYGKARLQGKAEYVFQKMTA 219 (366)
Q Consensus 194 ~~~li~~~~~~~~~~~a~~~~~~~~~ 219 (366)
++.+...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77778888888888888888777653
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.80 E-value=0.034 Score=35.99 Aligned_cols=67 Identities=10% Similarity=0.035 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCC
Q 017743 259 MKVSTLNAMLEAYCMNGL---PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326 (366)
Q Consensus 259 ~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 326 (366)
.++..+..+..++...++ .++|..++++..+.+.. +......+...+.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 477888888888876555 79999999999987643 78889999999999999999999999999864
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.61 E-value=0.03 Score=37.13 Aligned_cols=66 Identities=14% Similarity=-0.071 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 225 SFITYECIITMYGYCDNVSRAREIFDELSKLG------KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
+..-+-.+...+...++++.|...|+...+.. -.+....+..+..++.+.|+++.|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445556666666666666666666654421 1123455666666666666666666666666553
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.089 Score=38.39 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHH
Q 017743 191 LPTFNSMIINYGKARLQGKAEYVFQK 216 (366)
Q Consensus 191 ~~~~~~li~~~~~~~~~~~a~~~~~~ 216 (366)
...|..+.......|+++-|++.|.+
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34444444444444444444444443
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.56 E-value=0.08 Score=49.58 Aligned_cols=104 Identities=10% Similarity=0.066 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (366)
...++..+.+.|.++.|.++.+.- ..-.......|++++|.++.+.+ .+...|..+...+.+
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~ 693 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHH
Confidence 377788888889988888766321 11134456789999999886543 377899999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHh
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 219 (366)
.++++.|.+.|.++.+ |..+...+...++.+...++-+....
T Consensus 694 ~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 694 RFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp TTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999988743 34445555556666655555444443
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.47 E-value=0.033 Score=39.53 Aligned_cols=88 Identities=14% Similarity=0.065 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHhhchHHHH
Q 017743 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG---LPTEADLLFENSHNMGVTP--DSSTYKLLYKAYTKANMKELV 315 (366)
Q Consensus 241 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a 315 (366)
.+..+.+-|.+..+.+. ++..+...+..++++.+ +.++++.+++...+.+ .| +...+..+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34445555555544443 35555555666666655 4446666666655543 22 234445555556666666666
Q ss_pred HHHHHHHHhCCCCCChh
Q 017743 316 QKLLKRMEQNGIVPNKR 332 (366)
Q Consensus 316 ~~~~~~m~~~g~~~~~~ 332 (366)
+++++.+.+ +.|+..
T Consensus 91 ~~y~~~lL~--ieP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQNN 105 (152)
T ss_dssp HHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHh--cCCCCH
Confidence 666666665 445443
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.42 E-value=0.046 Score=36.16 Aligned_cols=66 Identities=6% Similarity=-0.127 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC------CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 017743 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMK------YTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 191 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
..-+..+...+...+++..|..+++...+.. -.+...++..+..++.+.|+++.|...++.+.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3344455555555666666666665544320 12334556666666666666666666666666543
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.31 E-value=0.079 Score=42.12 Aligned_cols=95 Identities=15% Similarity=0.143 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-
Q 017743 64 KALAKALGYFQKMKGMERCKPN---IVTYNILLRACAQ-----ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN- 134 (366)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~- 134 (366)
+....|...+++..+. .|+ ...|..+...|.. -|+.++|.+.|++.++.+..-+..++......++..
T Consensus 177 ~~l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 177 DTVHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTT
T ss_pred HhHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Confidence 4456666666666653 344 4567777777776 377777777777777764222356666666666663
Q ss_pred CCHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 017743 135 GMIKEMESVLSRMKSNQCK--PDIITFNL 161 (366)
Q Consensus 135 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 161 (366)
|+.+++.+.+++....... |+....+.
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 7777777777777766544 44444333
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.24 E-value=0.16 Score=34.96 Aligned_cols=140 Identities=15% Similarity=0.022 Sum_probs=83.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHH
Q 017743 96 CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 175 (366)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 175 (366)
+.-.|.+++..++..+..... +..-+|-++.-....-+-+-..++++.+-+. + | ...+|+....
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--D----------is~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--D----------LDKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--C----------GGGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh-c--C----------cHhhhcHHHH
Confidence 344667777777777766642 4555555665555555555555555554332 1 1 1345555555
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 176 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
...+-.+ ..+...+...+..+...|.-+...+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.
T Consensus 81 i~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 5555443 124445566666777777777777777775432 2566667777777777777777777777777666
Q ss_pred CC
Q 017743 256 GK 257 (366)
Q Consensus 256 ~~ 257 (366)
|+
T Consensus 155 G~ 156 (172)
T 1wy6_A 155 GE 156 (172)
T ss_dssp TC
T ss_pred hh
Confidence 64
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.27 Score=35.84 Aligned_cols=101 Identities=13% Similarity=0.019 Sum_probs=68.7
Q ss_pred HHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 017743 200 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 279 (366)
Q Consensus 200 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 279 (366)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|...|+.++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345789999999988766 3578999999999999999999999987653 3344444555666666
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHH
Q 017743 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321 (366)
Q Consensus 280 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (366)
..++-+.....| . ++.....+...|+++++.++|.+
T Consensus 79 L~kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 665555544443 1 34444455556666666666543
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.97 E-value=0.064 Score=37.67 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=42.0
Q ss_pred CChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 017743 275 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 342 (366)
Q Consensus 275 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 342 (366)
++.++|.++|+.+++.+-.- ...|....+.-.++|+.+.|.+++......+-.| ...+..+|+.+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~nl~ 139 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRNLN 139 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHhhh
Confidence 67777777777775542222 6666666666677777888888777777765443 344555555543
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.95 E-value=0.23 Score=34.23 Aligned_cols=85 Identities=13% Similarity=0.058 Sum_probs=67.0
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHH
Q 017743 238 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 317 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 317 (366)
.+|++......+-.+- .+....+..+......|+-++-.+++..+... -+|++.....+..||.+.|+..++.+
T Consensus 73 ~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATT 146 (172)
T ss_dssp GCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHH
Confidence 4566666655554332 24667788888899999999999999996553 47889999999999999999999999
Q ss_pred HHHHHHhCCCC
Q 017743 318 LLKRMEQNGIV 328 (366)
Q Consensus 318 ~~~~m~~~g~~ 328 (366)
++.+..++|++
T Consensus 147 Ll~~AC~kG~k 157 (172)
T 1wy6_A 147 LLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHhhhH
Confidence 99999999975
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.77 E-value=0.17 Score=35.60 Aligned_cols=102 Identities=12% Similarity=0.062 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCChh-hHHHHHHHH------HhcCCHHHHHHHHHHHHH
Q 017743 83 KPNIVTYNILLRACAQARNV------DQVNALFKELHESILAPDIY-TYNGVMDAY------GKNGMIKEMESVLSRMKS 149 (366)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~------~~~~~~~~a~~~~~~~~~ 149 (366)
+.|..+|-..+...-+.|++ +...++|++.... ++|+.. .+...+..+ ...++.++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45666777777777766777 7777777777764 455421 111111111 122455555555555543
Q ss_pred CCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 017743 150 NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 186 (366)
Q Consensus 150 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 186 (366)
.+-. =...|......-.+.|+.+.|.+++...+..+
T Consensus 89 ~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 89 NCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 3111 13344444444444555555555555554443
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.67 E-value=0.15 Score=34.75 Aligned_cols=84 Identities=14% Similarity=-0.127 Sum_probs=37.4
Q ss_pred cHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHH---HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHH
Q 017743 206 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR---AREIFDELSKLG-KDMKVSTLNAMLEAYCMNGLPTEAD 281 (366)
Q Consensus 206 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~ 281 (366)
....+.+-|......+ .++..+--.+..++.+..+... ++.+++.+.+.+ +.-.....-.|.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444444443333 2444444444444444443333 555555555442 1012223333444555555555555
Q ss_pred HHHHHhhhC
Q 017743 282 LLFENSHNM 290 (366)
Q Consensus 282 ~~~~~~~~~ 290 (366)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555553
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.64 E-value=0.64 Score=37.02 Aligned_cols=92 Identities=13% Similarity=0.024 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhc-----CcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc-CcH
Q 017743 172 FDKMEQVFKSLMHSKEKPT---LPTFNSMIINYGKA-----RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC-DNV 242 (366)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 242 (366)
...|...+++.++ +.|+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 3455566666655 3344 44666666666663 67777777777766653211255555666666663 667
Q ss_pred HHHHHHHHHHHhCCCC--CCHHHHH
Q 017743 243 SRAREIFDELSKLGKD--MKVSTLN 265 (366)
Q Consensus 243 ~~a~~~~~~~~~~~~~--~~~~~~~ 265 (366)
+++.+.+++.....+. |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 7777777776666554 5544443
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.51 E-value=0.11 Score=35.54 Aligned_cols=66 Identities=9% Similarity=-0.031 Sum_probs=27.9
Q ss_pred CChhhHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 017743 119 PDIYTYNGVMDAYGKNGMIKE---MESVLSRMKSNQCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 184 (366)
Q Consensus 119 ~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 184 (366)
++..+-..+..++++..+... ++.+++++...+.+ -.....-.+.-++.+.|+++.|.+.++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444443332 44444444443210 1222233334444555555555555555544
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.61 E-value=0.32 Score=44.66 Aligned_cols=53 Identities=8% Similarity=-0.023 Sum_probs=36.5
Q ss_pred HHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 017743 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 287 (366)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 287 (366)
..+...|+++-|+.+-++....-+. +-.+|..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445567777777777777665433 5677777777777777777777777765
No 236
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.41 E-value=0.6 Score=30.17 Aligned_cols=65 Identities=11% Similarity=0.142 Sum_probs=44.2
Q ss_pred ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 017743 276 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341 (366)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 341 (366)
+.-+..+-++.+...++.|++......+++|.+.+++..|.++++-.+.+- .+....|..+++-+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHHH
Confidence 344566677777777777888888888888888888888888887776442 22244566666544
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.33 E-value=0.3 Score=44.79 Aligned_cols=125 Identities=15% Similarity=0.092 Sum_probs=73.8
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCC-HHHHHHHHHHHHHC------CCCC-CH--
Q 017743 90 NILLRACAQARN-VDQVNALFKELHESILAPDIYTYN--GVMDAYGKNGM-IKEMESVLSRMKSN------QCKP-DI-- 156 (366)
Q Consensus 90 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~-- 156 (366)
..++..+...++ .+.|..+++++.... |...++. .++..+.+.++ --+|.+++.+..+. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 345555555555 577888888887763 3333322 22333333322 22455555444321 1111 11
Q ss_pred --------HHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHH
Q 017743 157 --------ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 217 (366)
Q Consensus 157 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 217 (366)
.....-...+...|+++.|+++-++.... .+.+-.+|..|..+|...|+++.|+-.+..+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222234466788899999988888775 3446788999999999999999988888765
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.31 E-value=0.22 Score=42.06 Aligned_cols=55 Identities=15% Similarity=0.031 Sum_probs=25.3
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 017743 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 322 (366)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 322 (366)
++..+...|+++++...+..+.... +.+...|..++.++.+.|+..+|++.|+..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444445555444444444332 224444445555555555555554444443
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.20 E-value=3.8 Score=38.68 Aligned_cols=216 Identities=9% Similarity=-0.019 Sum_probs=120.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHhccCChhHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHhc
Q 017743 129 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI--DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN--SMIINYGKA 204 (366)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~ 204 (366)
..++-.|+.+....++..+.+.. +..+...+. -++...|+.+.+..+++.+... ..|-...-. ++.-+|+..
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTS
T ss_pred hhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCC
Confidence 33456677777777777766542 222232233 3344677888888887777653 222222222 233456677
Q ss_pred CcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHH
Q 017743 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP-TEADLL 283 (366)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~ 283 (366)
|+.....+++..+.... ..+..-...+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .++..+
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 88777777888887642 2233333333334444566666677776666543 34444444555555555554 567788
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhhc---------hHHHHHHHHHHHHh-CCCCCChhHHHHHHHHhhcccccCCCCCc
Q 017743 284 FENSHNMGVTPDSSTYKLLYKAYTKAN---------MKELVQKLLKRMEQ-NGIVPNKRFFLEALETFSSSLAGSQSGSA 353 (366)
Q Consensus 284 ~~~~~~~~~~p~~~~~~~l~~~~~~~~---------~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~~~~~ 353 (366)
+..+.. .+|..+-...+.++...| +....++.+..... +.-.++......+-++....|+....-+.
T Consensus 652 L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis~ 728 (963)
T 4ady_A 652 LDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQL 728 (963)
T ss_dssp HHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEECS
T ss_pred HHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 888765 245555544444444333 34444444444443 23456677777788888888777544443
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.72 E-value=4.8 Score=38.07 Aligned_cols=261 Identities=10% Similarity=-0.042 Sum_probs=146.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-------CCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHH--HHHH
Q 017743 92 LLRACAQARNVDQVNALFKELHESIL-------APDIYTYNGVMDAYGKNGM-IKEMESVLSRMKSNQCKPDII--TFNL 161 (366)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~ 161 (366)
+.-+....|..+++..++...+...- .+....-..+.-+++-.|. -+++.+.+..+....- +... .--.
T Consensus 417 laLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalA 495 (963)
T 4ady_A 417 YGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALG 495 (963)
T ss_dssp HHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHH
Confidence 33445556665677777777665421 0111122233333333343 2456666666655321 1111 1123
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHH--HHHHHHHhhcc
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT--YECIITMYGYC 239 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 239 (366)
+...+...|+.+....++..+.+. ...+..-...+.-++...|+.+.+..+.+.+.... .|.... ..++.-+|+..
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~-~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQET-QHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTS
T ss_pred HhhhhcccCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCC
Confidence 344466778888888888777653 22222223333344456789999999988888642 232222 23445678888
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchH-HHHHHH
Q 017743 240 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK-ELVQKL 318 (366)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~ 318 (366)
|+.....+++..+.+.. ..++.....+.-++...|+.+.+.+++..+.+.+ .|...--..+.-+....|.. .++..+
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 99888878998888753 2234433344445556788888888887776654 44444444444444444443 567778
Q ss_pred HHHHHhCCCCCChhHHHHHHHHhhcccccCCCC--Cccchhhhh
Q 017743 319 LKRMEQNGIVPNKRFFLEALETFSSSLAGSQSG--SAKTDLTRS 360 (366)
Q Consensus 319 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~--~~~~~~~r~ 360 (366)
+..+.. .+|..+-...+.+++.-+...... .....+.|.
T Consensus 652 L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~ 692 (963)
T 4ady_A 652 LDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKN 692 (963)
T ss_dssp HHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHH
T ss_pred HHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHH
Confidence 888874 356666667777777776653322 234444444
No 241
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.68 E-value=1.1 Score=30.70 Aligned_cols=64 Identities=11% Similarity=0.158 Sum_probs=44.7
Q ss_pred hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 017743 277 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 341 (366)
Q Consensus 277 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 341 (366)
.-+..+-++.+...++.|++......+++|.+.+++..|.++|+-.+.+ ..+....|..+++-+
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 3456666777777778888888888888888888888888888877754 223345566666654
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.26 E-value=3.6 Score=35.35 Aligned_cols=188 Identities=9% Similarity=0.021 Sum_probs=101.6
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hccC
Q 017743 100 RNVDQVNALFKELHES-----ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY----GKRQ 170 (366)
Q Consensus 100 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~ 170 (366)
|+++.|.+.+..+.+. +...+......++..|...++++...+.+..+....-.. ......+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 6788888877666543 234455667788888999999988888777665442222 22223333322 2222
Q ss_pred ChhH--HHHHHHHHHh---cCCCC---CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhC--CCCCC---HHHHHHHHHHhh
Q 017743 171 AFDK--MEQVFKSLMH---SKEKP---TLPTFNSMIINYGKARLQGKAEYVFQKMTAM--KYTPS---FITYECIITMYG 237 (366)
Q Consensus 171 ~~~~--a~~~~~~~~~---~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~ 237 (366)
..+. -..+.+.... ..+.. .......+...+...|++.+|..++..+... +.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221 1111111111 11111 1223345666677777777777777776532 21111 234556666777
Q ss_pred ccCcHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 017743 238 YCDNVSRAREIFDELSK----LGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSH 288 (366)
Q Consensus 238 ~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~ 288 (366)
..+++..|..++..+.. ....|+ ...+...+..+...+++.+|.+.|.+..
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77777777777766532 111111 2345556666666777777766655543
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.85 E-value=3.3 Score=40.56 Aligned_cols=61 Identities=10% Similarity=-0.024 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017743 89 YNILLRACAQARNVDQVNALFKELHESILAPDI----YTYNGVMDAYGKNGMIKEMESVLSRMKS 149 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 149 (366)
|..++..+-+.+.++.+.+.-...++...+-+. ..|..+.+.+...|++++|...+..+..
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 344444444444444444444443332111111 1234444444444555555444444443
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.65 E-value=0.7 Score=38.98 Aligned_cols=55 Identities=13% Similarity=-0.018 Sum_probs=30.0
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 017743 197 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 252 (366)
Q Consensus 197 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 252 (366)
++..+...|++.++...+..+.... +.+...|..++.++...|+..+|.+.|+.+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444555555555555555554432 344555555666666666666665555554
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.57 E-value=5 Score=39.35 Aligned_cols=211 Identities=14% Similarity=0.008 Sum_probs=128.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC------------------
Q 017743 126 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE------------------ 187 (366)
Q Consensus 126 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------ 187 (366)
.++..+...+..+-+.++..- ++.+....-.+..++...|++++|.+.|.+.... +
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhhhhhcccccccc
Confidence 344455556666655554432 2335555556677889999999999999775221 1
Q ss_pred -----CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC----HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC
Q 017743 188 -----KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS----FITYECIITMYGYCDNVSRAREIFDELSKLGKD 258 (366)
Q Consensus 188 -----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 258 (366)
..-..-|..++..+.+.+.++.+.++-+..++...+.+ ...|..+.+.+...|++++|...+-.+.....+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 01123467788888889999999888877665421222 236888999999999999999999888776543
Q ss_pred CCHHHHHHHHHHHHhcCChhH------------HHHHHHHhhh-C-CCCCCHHHHHHHHHHHHhhchHHHH-HHHHHHHH
Q 017743 259 MKVSTLNAMLEAYCMNGLPTE------------ADLLFENSHN-M-GVTPDSSTYKLLYKAYTKANMKELV-QKLLKRME 323 (366)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~------------a~~~~~~~~~-~-~~~p~~~~~~~l~~~~~~~~~~~~a-~~~~~~m~ 323 (366)
......|+...+..|..+. ..+++....+ . .+...+.-|..|-.-....|++..| .-+|+...
T Consensus 971 --~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 971 --KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp --HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 6677778887777655444 3334332111 1 1121223455555556666766544 44455544
Q ss_pred hCC----C-C-----CChhHHHHHHHHhhcc
Q 017743 324 QNG----I-V-----PNKRFFLEALETFSSS 344 (366)
Q Consensus 324 ~~g----~-~-----~~~~~~~~ll~~~~~~ 344 (366)
+.+ . . .-...|..+|++++--
T Consensus 1049 RL~~~~~~~~~~~~~~q~~~yL~~INaLslv 1079 (1139)
T 4fhn_B 1049 RYISTTELIGKKERTFIIEHYLIVLNTLELL 1079 (1139)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhhhccccccchhHHHHHHHHHHHHHHHhcC
Confidence 321 1 1 1135677777777554
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.11 E-value=1.6 Score=28.28 Aligned_cols=48 Identities=15% Similarity=-0.002 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 017743 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
.-+..+-++.+......|++....+.+.+|.+.+++..|.++++..+.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444555555555555566666666666666666666665555543
No 247
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=91.02 E-value=4.8 Score=33.30 Aligned_cols=25 Identities=8% Similarity=0.357 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 017743 89 YNILLRACAQARNVDQVNALFKELH 113 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~ 113 (366)
...+|.-|...++.++|.+.++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4567777888888888888887754
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.66 E-value=7.5 Score=33.40 Aligned_cols=187 Identities=9% Similarity=0.012 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHH----HHHhcCC
Q 017743 66 LAKALGYFQKMKG----MERCKPNIVTYNILLRACAQARNVDQVNALFKELHES-ILAPDIYTYNGVMD----AYGKNGM 136 (366)
Q Consensus 66 ~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~----~~~~~~~ 136 (366)
++.|++.+..+.+ ......+......++..|...++++...+.+..+.+. |..+ .....+++ .......
T Consensus 32 ~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 32 CNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcCCc
Confidence 4555544433332 1223445566677777777777777776666555432 2211 11222222 2222222
Q ss_pred HHH--HHHHHHHHH---HCCCCC---CHHHHHHHHHHHhccCChhHHHHHHHHHHhc--CCCCC---HHHHHHHHHHHHh
Q 017743 137 IKE--MESVLSRMK---SNQCKP---DIITFNLLIDSYGKRQAFDKMEQVFKSLMHS--KEKPT---LPTFNSMIINYGK 203 (366)
Q Consensus 137 ~~~--a~~~~~~~~---~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~~~ 203 (366)
.+. -..+.+.+. +..+-. .......|...+...|++.+|.+++..+... +..+. ...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 221 111111110 011111 1223345667777778888888887776432 11111 3456666777777
Q ss_pred cCcHhHHHHHHHHHHh----CCCCCC--HHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 017743 204 ARLQGKAEYVFQKMTA----MKYTPS--FITYECIITMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 204 ~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 254 (366)
.+++..|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++..
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 7888888777776532 222222 23456666666677777777776666543
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.59 E-value=3 Score=28.66 Aligned_cols=62 Identities=15% Similarity=0.084 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 017743 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 303 (366)
Q Consensus 241 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 303 (366)
+.-+..+-++.+...+..|++....+.+.+|-+.+++..|.++|+-.+.+ ..+....|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 33445555566666666677777777777777777777777777766543 223344455554
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.58 E-value=3.7 Score=28.20 Aligned_cols=24 Identities=8% Similarity=-0.100 Sum_probs=10.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 017743 126 GVMDAYGKNGMIKEMESVLSRMKS 149 (366)
Q Consensus 126 ~ll~~~~~~~~~~~a~~~~~~~~~ 149 (366)
.+.-++.+.|++++|.+..+.+.+
T Consensus 83 yLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 83 YLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 333344444444444444444443
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.84 E-value=5.8 Score=27.24 Aligned_cols=49 Identities=10% Similarity=0.017 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
..+++.+++.+.+.+..-....+-.|.-++.+.|++++|.+..+.+.+.
T Consensus 59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3345555555554432112333444455555555555555555555553
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.33 E-value=7 Score=30.68 Aligned_cols=116 Identities=15% Similarity=0.024 Sum_probs=77.8
Q ss_pred HHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCC
Q 017743 199 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGL 276 (366)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~ 276 (366)
....+.|.+++++.....-++.. +.|...-..+++.+|-.|+++.|.+-++.+.+..+.. ....|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 44567899999999888888775 6678888899999999999999999998888764331 22234444433
Q ss_pred hhHHHHHHHHhhhCC-----CCCCHHHHHHHHHHHH--hhchHHHHHHHHHHHHhC
Q 017743 277 PTEADLLFENSHNMG-----VTPDSSTYKLLYKAYT--KANMKELVQKLLKRMEQN 325 (366)
Q Consensus 277 ~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~ 325 (366)
+..-.+...-+ +.....-...++.+.. ..|+.++|..+-....+.
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222222221 1223445566666654 469999999998888654
No 253
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=85.89 E-value=0.0062 Score=51.91 Aligned_cols=216 Identities=11% Similarity=0.134 Sum_probs=127.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (366)
|+..|..++.+..+.|.+++-.+.+...++.. -+...=+.|+-+|++.++..+..+++. .||..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHH
Confidence 44456666677777777777666665554432 233444566667777666554333321 244444455555
Q ss_pred HHhccCChhHHHHHHHHHHhc--------------------CCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC
Q 017743 165 SYGKRQAFDKMEQVFKSLMHS--------------------KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 224 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 224 (366)
-|...|.++.|.-+|..+... .-..++.||-.+-.+|...+.+.-|.-.--.++-. |
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a 229 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A 229 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H
Confidence 555555555555444432211 01235678888888888888888776554444422 2
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCC------CHH
Q 017743 225 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM-GVTP------DSS 297 (366)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p------~~~ 297 (366)
+ -...++..|...|.+++-+.+++.-.... ......|+-|.-.|++- ++++..+.++..-.. +++- ...
T Consensus 230 d--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ah 305 (624)
T 3lvg_A 230 D--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 305 (624)
T ss_dssp S--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTT
T ss_pred H--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 1 12346778888999999999998877543 34788899998888876 666666665543321 2211 123
Q ss_pred HHHHHHHHHHhhchHHHHH
Q 017743 298 TYKLLYKAYTKANMKELVQ 316 (366)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~ 316 (366)
.|.-++-.|.+-.+++.|.
T Consensus 306 LW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 306 LWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHhcchhHHHHH
Confidence 4555555566666666553
No 254
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=85.70 E-value=0.00013 Score=61.78 Aligned_cols=200 Identities=13% Similarity=0.111 Sum_probs=130.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 164 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 164 (366)
.+..|..|..+....+++.+|++-|-+ . -|+..|..++.+..+.|.+++-.+++....+..- +...=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk---A---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK---A---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC---C---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh---C---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 445688899999999988888776622 2 2677889999999999999999999887776533 3444567899
Q ss_pred HHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC--------------------CCC
Q 017743 165 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK--------------------YTP 224 (366)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~ 224 (366)
+|++.++..+..+++ ..|+..-...+..-|...|.++.|.-+|..+.... -..
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999877654433 23566666677777888888887776666543211 123
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 017743 225 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 304 (366)
Q Consensus 225 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 304 (366)
++.||..+-.+|...+.+.-|.-.--.+.-. +.-...++..|-..|.+++.+.+++.-.... +....+|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 4556777777777777766655443333321 1122345666777788888777777655321 233444444333
Q ss_pred H
Q 017743 305 A 305 (366)
Q Consensus 305 ~ 305 (366)
.
T Consensus 272 L 272 (624)
T 3lvg_A 272 L 272 (624)
T ss_dssp H
T ss_pred H
Confidence 3
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.33 E-value=7.5 Score=27.09 Aligned_cols=67 Identities=4% Similarity=-0.096 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 017743 84 PNIVTYNILLRACAQARN---VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 150 (366)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 150 (366)
|+..+--.+..+++++.. ..+++.+++.+.+.+..-.......+.-++.+.|++++|.+..+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 444444444444444443 2244444544444322112223333344444555555555555544443
No 256
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=84.62 E-value=6.1 Score=31.88 Aligned_cols=25 Identities=8% Similarity=0.357 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 017743 89 YNILLRACAQARNVDQVNALFKELH 113 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~ 113 (366)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567777888888888888887753
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.58 E-value=11 Score=32.12 Aligned_cols=97 Identities=7% Similarity=-0.133 Sum_probs=54.7
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHh---CCCCCCHH--HHH
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKE--KPTLPTFNSMIINYGKARLQGKAEYVFQKMTA---MKYTPSFI--TYE 230 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~--~~~ 230 (366)
+...+...|.+.|+++.|.+.+.++...-. ..-...+-.++..+...+++..+...+.+... .+..|+.. ...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455667777777777777777777765422 22345566666777777777777777766542 22122221 112
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHh
Q 017743 231 CIITMYGYCDNVSRAREIFDELSK 254 (366)
Q Consensus 231 ~l~~~~~~~~~~~~a~~~~~~~~~ 254 (366)
.-...+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 223334455666666666555443
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.53 E-value=13 Score=31.83 Aligned_cols=119 Identities=11% Similarity=-0.026 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcC-CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCChhHHHH
Q 017743 102 VDQVNALFKELHESI-LAP-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSN--QCKPDIITFNLLIDSYGKRQAFDKMEQ 177 (366)
Q Consensus 102 ~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~ 177 (366)
+++..+......+.. ... -..+...+...|.+.|++++|.+.+.++... +...-...+-.++..+...+++..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 444444444444422 111 2346788999999999999999999999764 233346778888999999999999999
Q ss_pred HHHHHHhc---CCCCCHHHHH--HHHHHHHhcCcHhHHHHHHHHHHhC
Q 017743 178 VFKSLMHS---KEKPTLPTFN--SMIINYGKARLQGKAEYVFQKMTAM 220 (366)
Q Consensus 178 ~~~~~~~~---~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~ 220 (366)
.+.++... +..|+...-. .-...+...+++..|...|-+....
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 99887542 3333322111 1112234568899888888776543
No 259
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=82.54 E-value=4.1 Score=27.95 Aligned_cols=65 Identities=12% Similarity=0.066 Sum_probs=35.3
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHhhhCCCC
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL--PTEADLLFENSHNMGVT 293 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~ 293 (366)
....++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3456677777777788887777776532111 12333334444443322 34456666666665544
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.01 E-value=6.9 Score=30.70 Aligned_cols=113 Identities=4% Similarity=-0.047 Sum_probs=70.9
Q ss_pred HHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCC----HHHHHHHHHHhhcc
Q 017743 164 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS----FITYECIITMYGYC 239 (366)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 239 (366)
....+.|+++++++....-++. -+.|...-..+++.+|-.|++++|..-++...+.. |+ ...|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHH----
Confidence 4466788888888888877776 34577778888888899999999988888877653 43 2344444432
Q ss_pred CcHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHh--cCChhHHHHHHHHhhh
Q 017743 240 DNVSRAREIFDELSKLGKD-----MKVSTLNAMLEAYCM--NGLPTEADLLFENSHN 289 (366)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~ 289 (366)
+..=.....-+-. ....-...++.+... .|+.++|.++-..+.+
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 1111222222211 123344455555443 5888888888777654
No 261
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.70 E-value=4.9 Score=28.86 Aligned_cols=23 Identities=4% Similarity=-0.230 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHH
Q 017743 195 NSMIINYGKARLQGKAEYVFQKM 217 (366)
Q Consensus 195 ~~li~~~~~~~~~~~a~~~~~~~ 217 (366)
..+.+++...+++..|...|++.
T Consensus 67 ~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 67 VYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 33444455555555555555543
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.29 E-value=11 Score=26.19 Aligned_cols=49 Identities=10% Similarity=0.017 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 017743 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 290 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 290 (366)
..+++.+++.+.+.+..-.....-.|.-++.+.|++++|.++.+.+.+.
T Consensus 58 i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 58 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3455556666555433223333344555566666666666666666553
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.00 E-value=8.9 Score=24.73 Aligned_cols=50 Identities=6% Similarity=0.040 Sum_probs=24.2
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
+...|++++|..+.+.. ..||...|.++-. .+.|..+++...+..+...|
T Consensus 49 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 44555555555444333 3455555444322 34455555555555555444
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.31 E-value=9.5 Score=24.64 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=23.9
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC
Q 017743 166 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 221 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 221 (366)
+...|++++|..+.+.. ..||...|.++-. .+.|..+++...+..+...|
T Consensus 50 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 44555555555544433 3455555444332 24455555555554444444
No 265
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=80.26 E-value=5.2 Score=28.35 Aligned_cols=67 Identities=12% Similarity=0.046 Sum_probs=40.3
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHhhhCCCCCC
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL--PTEADLLFENSHNMGVTPD 295 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~ 295 (366)
....++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567778888888889998888887532221 22333444444444322 3456677777776665543
No 266
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=76.95 E-value=18 Score=25.98 Aligned_cols=119 Identities=9% Similarity=-0.060 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHH
Q 017743 88 TYNILLRACAQARNVDQVNALFKELHESI-LAPDI-------YTYNGVMDAYGKNGMIKEMESVLSRMKSNQ--CKPDII 157 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ 157 (366)
++-.-++.+...+.++.|.-+.+.+.... ..|+. .++..+..++...+++..|...|++..+.. +.-+..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44455677778888888888877765432 12231 245667788888899999988888864321 111111
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHh
Q 017743 158 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 219 (366)
Q Consensus 158 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 219 (366)
+...+.. ...... ......+...-..+..+|.+.+++++|+.+++.+..
T Consensus 102 ~~~~~~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 102 VRPSTGN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccccccc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 1111100 000000 000223444444567777777888888777776543
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.31 E-value=23 Score=26.39 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=8.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhhh
Q 017743 267 MLEAYCMNGLPTEADLLFENSHN 289 (366)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~~~~ 289 (366)
....+...|++.+|.++|+.-++
T Consensus 121 wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 121 FSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=69.45 E-value=45 Score=27.24 Aligned_cols=18 Identities=6% Similarity=0.021 Sum_probs=11.0
Q ss_pred HHhhchHHHHHHHHHHHH
Q 017743 306 YTKANMKELVQKLLKRME 323 (366)
Q Consensus 306 ~~~~~~~~~a~~~~~~m~ 323 (366)
|.-.++...|..+++...
T Consensus 197 yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 197 YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 445566777776665554
No 269
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=67.71 E-value=51 Score=27.23 Aligned_cols=75 Identities=11% Similarity=0.025 Sum_probs=39.5
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 017743 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL--PTEADLLFENSHNMGVTPDSSTYKLLYK 304 (366)
Q Consensus 229 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 304 (366)
...++.=|...++.++|.+.++++...... ...+...+..+.-+.++ .+...+++..+...|+-+.......+.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 456666677777777777777777532221 12333344444443322 3345666666666665544443333333
No 270
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=65.41 E-value=52 Score=26.50 Aligned_cols=58 Identities=7% Similarity=0.105 Sum_probs=32.8
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHH
Q 017743 49 YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN--VDQVNALFKELH 113 (366)
Q Consensus 49 ~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~ 113 (366)
...++.-|...++ .++|...++++.. . .........++......++ -+.+-.++..+.
T Consensus 6 ~~~ii~EYf~~~d----~~Ea~~~l~el~~-p--~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~ 65 (307)
T 2zu6_B 6 LTPIIQEYFEHGD----TNEVAEMLRDLNL-G--EMKSGVPVLAVSLALEGKASHREMTSKLLSDLC 65 (307)
T ss_dssp HHHHHHHHHHHCC----HHHHHHHHHTTCC-G--GGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC----HHHHHHHHHHhCC-c--chHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4667778875444 9999999988763 1 1122223344444444443 344555666665
No 271
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=64.81 E-value=34 Score=24.14 Aligned_cols=50 Identities=16% Similarity=0.115 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC
Q 017743 175 MEQVFKSLMHSKEKPT-LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 224 (366)
Q Consensus 175 a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 224 (366)
+.++|..|...|+-.. +..|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555555555544322 3344444445555555555555555555554444
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=62.82 E-value=19 Score=28.05 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=14.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 017743 16 KLIAVMGKKGQTRLAMWLFSEMRNSGCRP 44 (366)
Q Consensus 16 ~li~~~~~~~~~~~A~~~~~~~~~~g~~p 44 (366)
+.+...++.|+++.... +.+.|..+
T Consensus 7 ~~L~~A~~~g~~~~v~~----Ll~~g~~~ 31 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQ----LLEGGANV 31 (285)
T ss_dssp HHHHHHHHTTCHHHHHH----HHHTTCCT
T ss_pred hHHHHHHHcCCHHHHHH----HHHcCCCc
Confidence 45566677888654444 44455444
No 273
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=61.80 E-value=36 Score=25.66 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=23.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCHH
Q 017743 93 LRACAQARNVDQVNALFKELHESILAPDIYT--YNGVMDAYGKNGMIK 138 (366)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~ 138 (366)
+...+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~ 60 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH
Confidence 4445566777777777766655554433221 112334444555554
No 274
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=61.45 E-value=53 Score=25.22 Aligned_cols=88 Identities=6% Similarity=-0.032 Sum_probs=47.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 017743 92 LLRACAQARNVDQVNALFKELHES--ILAP----DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 165 (366)
Q Consensus 92 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (366)
-++.+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 456788889999999988877642 2221 111222223333333233333444444422 3345555556666
Q ss_pred HhccCChhHHHHHHHHH
Q 017743 166 YGKRQAFDKMEQVFKSL 182 (366)
Q Consensus 166 ~~~~~~~~~a~~~~~~~ 182 (366)
+.+.|+.+.|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 77777777777766443
No 275
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=61.38 E-value=30 Score=22.36 Aligned_cols=9 Identities=11% Similarity=-0.134 Sum_probs=3.6
Q ss_pred ccCcHHHHH
Q 017743 238 YCDNVSRAR 246 (366)
Q Consensus 238 ~~~~~~~a~ 246 (366)
..|++++|.
T Consensus 51 NrG~Yq~Al 59 (115)
T 2uwj_G 51 NQGRYQEAL 59 (115)
T ss_dssp HTTCHHHHH
T ss_pred cchhHHHHH
Confidence 334444443
No 276
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=60.77 E-value=65 Score=26.02 Aligned_cols=19 Identities=5% Similarity=-0.066 Sum_probs=13.5
Q ss_pred HHHhhchHHHHHHHHHHHH
Q 017743 305 AYTKANMKELVQKLLKRME 323 (366)
Q Consensus 305 ~~~~~~~~~~a~~~~~~m~ 323 (366)
-|.-.|+...|..+++...
T Consensus 197 ~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHH
Confidence 3455678888888877665
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=60.27 E-value=32 Score=22.28 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=22.0
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCC
Q 017743 271 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 326 (366)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 326 (366)
+...|++++|..+.+.+. .||...|..|. -.+.|..+.+...+.++..+|
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 344555555555444332 34444444332 233444444444444444433
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=59.88 E-value=13 Score=28.98 Aligned_cols=19 Identities=5% Similarity=0.072 Sum_probs=7.6
Q ss_pred cCChhHHHHHHHHhhhCCC
Q 017743 274 NGLPTEADLLFENSHNMGV 292 (366)
Q Consensus 274 ~g~~~~a~~~~~~~~~~~~ 292 (366)
.|......++.+.+.+.|.
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~ 210 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGA 210 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTC
T ss_pred ccccchHHHHHHHHHHcCC
Confidence 3333333344444444443
No 279
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=58.77 E-value=43 Score=23.30 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=29.4
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhc
Q 017743 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310 (366)
Q Consensus 251 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 310 (366)
.+.+.|.+++.. -..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344455554432 233444444444 5556666666666555555555544455554444
No 280
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=58.67 E-value=82 Score=26.48 Aligned_cols=237 Identities=8% Similarity=-0.034 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCC---ChhhHHHHHHHHhhchH-HHHHHHHHHHHHHHHhcCCCCCCCH
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEMRNS-GCRP---DPSVYNALITAHLHTRD-KAKALAKALGYFQKMKGMERCKPNI 86 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~-g~~p---~~~~~~~ll~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~ 86 (366)
.+...+...|.+.|+.++..+++.....- +.-| .......++..+....+ ....++-..+.+++.......-...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999988876432 1111 22344566666654332 2233455555555555311100011
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHH
Q 017743 87 VTYNILLRACAQARNVDQVNALFKELHESILAPDI-----YTYNGVMDAYGKNGMIKEMESVLSRMKSN--QCKPDIITF 159 (366)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ 159 (366)
..=..++..|...|++.+|.+++..+.+.=-..|. ..+..-+..|...+++.++...+...... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 12236788899999999998888888764212222 23455566778888988888888776432 122333222
Q ss_pred HHH----HHHHh-ccCChhHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCcHhHHHHHHH-HH-HhCCCCCCH
Q 017743 160 NLL----IDSYG-KRQAFDKMEQVFKSLMHSKEKPT------LPTFNSMIINYGKARLQGKAEYVFQ-KM-TAMKYTPSF 226 (366)
Q Consensus 160 ~~l----~~~~~-~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~-~~-~~~~~~~~~ 226 (366)
..+ .-.+. ..++|..|...|-+....-.... ...|..+ .+... ++..+...++. .. ... ..|..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~-~~r~el~~~l~~~~~~~~-~~pei 256 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIML-GQSDDVNQLVSGKLAITY-SGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHT-TCGGGHHHHHHSHHHHTT-CSHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHc-CCHHHHHHHhcccccccc-CCccH
Confidence 211 22345 67888888877766542211111 1122222 22222 22222222221 11 111 24555
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHH
Q 017743 227 ITYECIITMYGYCDNVSRAREIFDEL 252 (366)
Q Consensus 227 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 252 (366)
..+..++.++ ..+++.+...+++..
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 5666666665 356666666665554
No 281
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=58.44 E-value=55 Score=24.40 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=53.0
Q ss_pred CCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 017743 80 ERCKPNIVTYNILLRACAQ--ARNVDQVNALFKELHESILAPD-IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156 (366)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 156 (366)
...+.|.......+...-. .+....+..+|..|...|+--. ..-|......+...|++++|.++|+.-.+.+-.|-.
T Consensus 71 ~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 71 ETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp GGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3446676655554443333 4557788899998888875533 344566677777889999999999888888777643
No 282
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=58.32 E-value=44 Score=23.24 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=33.3
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhc
Q 017743 251 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310 (366)
Q Consensus 251 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 310 (366)
.+.+.|.+++. .-..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 12 ~l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 12 TLKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 34555666443 333445555555556667777777766655556666555555555544
No 283
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=58.05 E-value=46 Score=23.45 Aligned_cols=65 Identities=12% Similarity=0.146 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCc--HHHHHHHHHHHHhCCCC
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKD 258 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 258 (366)
....++.-|...|+.++|.+.++++.... --...+...+..++-+.++ .+.+..++..+.+.++-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 46778899999999999999999986211 1123344555556655332 45677788888776654
No 284
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=56.58 E-value=48 Score=23.21 Aligned_cols=60 Identities=10% Similarity=0.121 Sum_probs=33.8
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc
Q 017743 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206 (366)
Q Consensus 146 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 206 (366)
.+.+.|++++. --..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 17 ~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 34556655433 3334455555555566777777777666666666666556666665554
No 285
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=56.40 E-value=49 Score=23.19 Aligned_cols=58 Identities=10% Similarity=0.087 Sum_probs=28.5
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhc
Q 017743 252 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310 (366)
Q Consensus 252 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 310 (366)
+.+.|.+++ .--..++..+...+.+-.|.++++.+.+.+...+..|....+..+...|
T Consensus 18 l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444555532 2333445555555555566666666665554455555444444444444
No 286
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=55.50 E-value=47 Score=22.74 Aligned_cols=44 Identities=11% Similarity=0.093 Sum_probs=19.2
Q ss_pred HHHHHHhcC-ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhc
Q 017743 267 MLEAYCMNG-LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310 (366)
Q Consensus 267 li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 310 (366)
++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 23 Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 23 ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 333333333 44445555555555444444444444444444333
No 287
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=55.38 E-value=38 Score=21.66 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 017743 29 LAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILL 93 (366)
Q Consensus 29 ~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 93 (366)
.|.++.+++..-|+.|+..+...++..|...+-....+..-+-.|..-. .+..|+....+.+=
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~--~g~~pT~enL~~FE 89 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTST--HKVGLTSEILNSFE 89 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TCSBCCHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--CCCCCCHHHHHHHH
Confidence 3566777777778888888777777777544432333333333443322 56677777666543
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=54.00 E-value=72 Score=24.46 Aligned_cols=90 Identities=12% Similarity=0.037 Sum_probs=49.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc--CCCC----ChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
Q 017743 17 LIAVMGKKGQTRLAMWLFSEMRNS--GCRP----DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 90 (366)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~--g~~p----~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (366)
-++.+....++++|.+++++..+. +.++ +.......+..-. ....-.-+..+.+.+.. .++.....
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki----~eR~~~L~~~L~~~l~~----~~~~~~~r 95 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKI----EQRREAISSKLSQSILS----SNEIVHLK 95 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHH----HHHHHHHHHHHHHHHHT----CSSHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHH----HHHHHHHHHHHHHHHHh----cCCHHHHH
Confidence 467788889999999999887542 2221 1111222222222 11222233334444432 34555566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 017743 91 ILLRACAQARNVDQVNALFKELHE 114 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~ 114 (366)
..+..+.+.|+.++|.++|-+...
T Consensus 96 ~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 96 SGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCChhHHHHHHHHHHH
Confidence 666777777888888777765543
No 289
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=52.45 E-value=53 Score=22.46 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=31.6
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc
Q 017743 147 MKSNQCKPDIITFNLLIDSYGKRQ-AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206 (366)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 206 (366)
+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 44555554433 233444444444 555677777777666555566655555555555443
No 290
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=52.20 E-value=58 Score=22.80 Aligned_cols=61 Identities=15% Similarity=0.202 Sum_probs=35.8
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcH
Q 017743 146 RMKSNQCKPDIITFNLLIDSYGKRQ-AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 207 (366)
Q Consensus 146 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 207 (366)
.+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 7 ~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 355566665443 233445555554 5666777777777766666666666666666655543
No 291
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=51.46 E-value=52 Score=23.02 Aligned_cols=37 Identities=22% Similarity=0.442 Sum_probs=17.8
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 017743 241 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 277 (366)
Q Consensus 241 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 277 (366)
..-.|.++++.+.+.++..+..|.-.-+..+...|-.
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3344555555555544444444444444444444443
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.35 E-value=54 Score=22.26 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC--cHHHHHHHHHHHHhCCCC
Q 017743 193 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD--NVSRAREIFDELSKLGKD 258 (366)
Q Consensus 193 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~ 258 (366)
....++.-|...|+.++|.+.++++.... --...+...+..++-+.+ ..+....++..+.+.|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 45678888999999999999999886211 112334455555665543 245677788888776654
No 293
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=50.79 E-value=1e+02 Score=25.21 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHH
Q 017743 155 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 210 (366)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 210 (366)
+......+...|.+.+++.+|...|- .|-.++...+..++.-+...+...++
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccH
Confidence 55556667777777777777776662 12333335555555444444444433
No 294
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=50.79 E-value=59 Score=22.54 Aligned_cols=60 Identities=10% Similarity=0.136 Sum_probs=31.5
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc
Q 017743 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206 (366)
Q Consensus 146 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 206 (366)
.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 344555554432 233344444445555666666666665555555555555555555543
No 295
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=49.55 E-value=46 Score=23.14 Aligned_cols=58 Identities=3% Similarity=0.068 Sum_probs=29.8
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 017743 146 RMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 205 (366)
Q Consensus 146 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 205 (366)
.+.+.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344455554433 223333343444 4566666666666555555555555555555544
No 296
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.20 E-value=70 Score=22.90 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC
Q 017743 245 AREIFDELSKLGKDM-KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 295 (366)
Q Consensus 245 a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 295 (366)
...+|..|...++.. -...|......+...|++.+|.++|+.-++.+..|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 444555555554322 234455555555555666666666665555555553
No 297
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=48.82 E-value=30 Score=27.31 Aligned_cols=15 Identities=20% Similarity=0.022 Sum_probs=7.1
Q ss_pred HHHHHhcCCHHHHHH
Q 017743 93 LRACAQARNVDQVNA 107 (366)
Q Consensus 93 ~~~~~~~~~~~~a~~ 107 (366)
+...+..|+.+-+..
T Consensus 35 L~~A~~~g~~~~v~~ 49 (285)
T 3kea_A 35 SYYAIADNNVRLVCT 49 (285)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHH
Confidence 344445566544433
No 298
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=47.01 E-value=72 Score=22.68 Aligned_cols=57 Identities=9% Similarity=0.060 Sum_probs=28.1
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHhhc
Q 017743 253 SKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM--GVTPDSSTYKLLYKAYTKAN 310 (366)
Q Consensus 253 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~ 310 (366)
.+.|.+++. --..++..+...+..-.|.++++.+.+. +...+..|...-++.+...|
T Consensus 25 ~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 25 RQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 344555432 2344445555555555566666666554 44445555444444444444
No 299
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=46.79 E-value=74 Score=22.45 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 017743 105 VNALFKELHESILAPD-IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 154 (366)
Q Consensus 105 a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 154 (366)
+..+|..|...|+--. ..-|......+...|++++|.++|..-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5566666665554322 2234444555555666666666666666655554
No 300
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=45.53 E-value=72 Score=22.68 Aligned_cols=60 Identities=8% Similarity=0.093 Sum_probs=33.6
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCcH
Q 017743 147 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS--KEKPTLPTFNSMIINYGKARLQ 207 (366)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~ 207 (366)
+.+.|++++. --..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-.
T Consensus 24 L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 24 LRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445555433 2344555555555666677777776665 5555655555555555555543
No 301
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=44.36 E-value=25 Score=25.59 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=7.1
Q ss_pred HHhcCCHHHHHHHH
Q 017743 96 CAQARNVDQVNALF 109 (366)
Q Consensus 96 ~~~~~~~~~a~~~~ 109 (366)
.+..|+.+....++
T Consensus 12 A~~~g~~~~v~~ll 25 (201)
T 3hra_A 12 AANQRDTKKVKEIL 25 (201)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHhccHHHHHHHH
Confidence 34455655555444
No 302
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=44.23 E-value=1.4e+02 Score=25.03 Aligned_cols=231 Identities=10% Similarity=0.020 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCChhhH------HHHHHHH
Q 017743 62 KAKALAKALGYFQKMKGMERCKPN---IVTYNILLRACAQA-RNVDQVNALFKELHESILAPDIYTY------NGVMDAY 131 (366)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~------~~ll~~~ 131 (366)
+.++.++..+++......-+.-|. ......++..+... +..+.-.++..+..+..- -...+| ..++..|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~~l~~kL~~l~ 109 (394)
T 3txn_A 31 QEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQSLEARLIALY 109 (394)
T ss_dssp HHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 555577777777766543222222 23456777777664 344555555555554321 122333 2567788
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCChhHHHHHHHHHHhc--CCCCCHHHHHHH----HHH
Q 017743 132 GKNGMIKEMESVLSRMKSNQCKPD-----IITFNLLIDSYGKRQAFDKMEQVFKSLMHS--KEKPTLPTFNSM----IIN 200 (366)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l----i~~ 200 (366)
...|++.+|.+++..+.+.=-..| ..++..-+..|...+++..+...+...... .+.+++.....+ ...
T Consensus 110 ~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~ 189 (394)
T 3txn_A 110 FDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGIL 189 (394)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHH
Confidence 888888888888877765311111 234455566777888888888888776432 122333332221 122
Q ss_pred HH-hcCcHhHHHHHHHHHHhC-CC--CCCH-H--HHHHHHHHhhccCcHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHH
Q 017743 201 YG-KARLQGKAEYVFQKMTAM-KY--TPSF-I--TYECIITMYGYCDNVSRAREIFD-ELSKLGKDMKVSTLNAMLEAYC 272 (366)
Q Consensus 201 ~~-~~~~~~~a~~~~~~~~~~-~~--~~~~-~--~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~ 272 (366)
+. ..+++..|...|-+..+. .- .|.. . .|..+.... .++..+...++. .....-..|....+..++.+|
T Consensus 190 ~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~- 266 (394)
T 3txn_A 190 HAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEAS- 266 (394)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHH-
T ss_pred HHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCccHHHHHHHHHHH-
Confidence 34 677888887776655321 10 1111 1 122222221 222222222221 111111334555556666654
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCHH
Q 017743 273 MNGLPTEADLLFENSHNMGVTPDSS 297 (366)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~p~~~ 297 (366)
..+++.+...++..... .+..|..
T Consensus 267 ~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 267 HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 45677776666665433 2444544
No 303
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=44.19 E-value=51 Score=19.91 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=4.4
Q ss_pred HHHHHHHhhhC
Q 017743 280 ADLLFENSHNM 290 (366)
Q Consensus 280 a~~~~~~~~~~ 290 (366)
+.++++.+.+.
T Consensus 36 ~~el~~~l~~~ 46 (83)
T 2fu4_A 36 AEDLYKRLIDM 46 (83)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 33444444333
No 304
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=44.02 E-value=47 Score=19.40 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHH
Q 017743 263 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 313 (366)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 313 (366)
.++.++..++...-.+.++..+.++.+.| ..+..+|-.-++.+++..-..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQF~~ 53 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQFLV 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH
Confidence 35566666666666777777777777776 346666766666666544443
No 305
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=43.73 E-value=65 Score=24.12 Aligned_cols=187 Identities=9% Similarity=0.028 Sum_probs=88.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCChhHHHHHHHHHHhcCCCCCH---HHHHHHHHHH
Q 017743 127 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT--FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL---PTFNSMIINY 201 (366)
Q Consensus 127 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~ 201 (366)
.+...+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+ +.+.+.|..++. .-.+. +...
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~-l~~A 86 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV----RLLVTAGASPMALDRHGQTA-AHLA 86 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCH-HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHH----HHHHHcCCCccccCCCCCCH-HHHH
Confidence 35556678999988888887777665444221 11233444556666544 444445544332 12222 3333
Q ss_pred HhcCcHhHHHHHHHHHHhCCCCC---CHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcC
Q 017743 202 GKARLQGKAEYVFQKMTAMKYTP---SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS---TLNAMLEAYCMNG 275 (366)
Q Consensus 202 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g 275 (366)
+..|+.+-+..+++.....+..+ +....+.+. ..+..|+.+- ++.+.+.|..++.. .-...+...+..|
T Consensus 87 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH-VAVNTECQET----VQLLLERGADIDAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHH-HHHHHTCHHH----HHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHcCCCccccccccCcCCCcHHH-HHHHcCCHHH----HHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence 45677766665555533111111 111122222 2334555544 44444555443321 1223344455677
Q ss_pred ChhHHHHHHHHhhhCCCCCCHHH--HHHHHHHHHhhchHHHHHHHHHHHHhCCCCCCh
Q 017743 276 LPTEADLLFENSHNMGVTPDSST--YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331 (366)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 331 (366)
+.+-+..+++ .|..++... -.+.+......|..+ +++.+.+.|..++.
T Consensus 162 ~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~ 211 (241)
T 1k1a_A 162 SLSMVQLLLQ----HGANVNAQMYSGSSALHSASGRGLLP----LVRTLVRSGADSSL 211 (241)
T ss_dssp CHHHHHHHHH----TTCCTTCBCTTSCBHHHHHHHHTCHH----HHHHHHHTTCCTTC
T ss_pred CHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHhcCCCCCC
Confidence 7665554444 344433211 012233334556654 44455566766543
No 306
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.69 E-value=1.7e+02 Score=25.70 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHH
Q 017743 12 GIYSKLIAVMGKKGQTRLAMWLFSEM 37 (366)
Q Consensus 12 ~~~~~li~~~~~~~~~~~A~~~~~~~ 37 (366)
..+|.+++.|...+.+++|..+..+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 34566666666666666666666655
No 307
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=42.21 E-value=95 Score=22.44 Aligned_cols=28 Identities=4% Similarity=-0.131 Sum_probs=12.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 017743 128 MDAYGKNGMIKEMESVLSRMKSNQCKPD 155 (366)
Q Consensus 128 l~~~~~~~~~~~a~~~~~~~~~~~~~~~ 155 (366)
+...+..|+.+.-.++.+.+.+.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 3333444444444445555555554433
No 308
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=41.83 E-value=1.5e+02 Score=24.57 Aligned_cols=68 Identities=10% Similarity=0.050 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHH
Q 017743 88 TYNILLRACAQARNVDQVNALFKELHESILAPD---IYTYNGVMDAYGKNGM--IKEMESVLSRMKSNQCKPDIITF 159 (366)
Q Consensus 88 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~ 159 (366)
....++.-|...|+.++|.+.++++.. |+ ......++......++ .+.+-.++..+...++-+.....
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~ 86 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFM 86 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 356788889999999999999988742 33 1222333333333332 24455666666665544333333
No 309
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=41.69 E-value=57 Score=22.12 Aligned_cols=44 Identities=9% Similarity=-0.055 Sum_probs=20.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhc
Q 017743 267 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310 (366)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 310 (366)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444444444555555555555444444444444444444333
No 310
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=41.69 E-value=77 Score=22.95 Aligned_cols=66 Identities=8% Similarity=-0.084 Sum_probs=38.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh---HHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCH
Q 017743 91 ILLRACAQARNVDQVNALFKELHESILAPDIYT---YNGVMDAYGK-NGMIKEMESVLSRMKSNQCKPDI 156 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~ 156 (366)
+.+...+..|+.+.-.++.+.+++.|..++... .+.|..++.. ..+.....++.+.+.+.|..++.
T Consensus 40 T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 40 NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS
T ss_pred CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc
Confidence 345556667777766777888888886655422 2333322222 23444556677777777766553
No 311
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=41.63 E-value=38 Score=27.37 Aligned_cols=106 Identities=10% Similarity=0.031 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCCCCCH---HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhHHHHH
Q 017743 210 AEYVFQKMTAMKYTPSF---ITYECIITMYGYCDNVSRAREIFDELSKLGKDM---KVSTLNAMLEAYCMNGLPTEADLL 283 (366)
Q Consensus 210 a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~ 283 (366)
...+.+.+.+.|..++. .-.+. +...+..|..+.+..+++. .+..+ |..-.+.|. ..+..|+.+-
T Consensus 218 ~~~i~~lLl~~gad~n~~d~~g~t~-L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~-~A~~~g~~~i---- 288 (337)
T 4g8k_A 218 VEAITHLLLDHGADVNVRGERGKTP-LILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALL-LAVELKLKKI---- 288 (337)
T ss_dssp HHHHHHHHHHTTCCTTCCCGGGCCH-HHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHH-HHHHTTCHHH----
T ss_pred HHHHHHHHHHCCCCCCCcCCCCCCH-HHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHH-HHHHcCCHHH----
Confidence 33445555666655432 12222 3334456776655444331 12222 222223333 3345666543
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCCh
Q 017743 284 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 331 (366)
Q Consensus 284 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 331 (366)
.+.+.+.|..+|..+ .+....+.|+.+ +.+.+++.|-.||.
T Consensus 289 v~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 289 AELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 344456676666543 233334556554 45566777776664
No 312
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=40.68 E-value=90 Score=22.32 Aligned_cols=60 Identities=13% Similarity=0.035 Sum_probs=35.7
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh--hHHHHHHHHhhh
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP--TEADLLFENSHN 289 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~~~~ 289 (366)
....++.-|...++.++|...++++..... .......+|......++. +.+-.++..+..
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~--~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~ 73 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG 73 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSGG--GGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 345677778888899999988888764332 233444444444444332 234566666644
No 313
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=40.16 E-value=1.1e+02 Score=22.45 Aligned_cols=19 Identities=11% Similarity=-0.172 Sum_probs=9.0
Q ss_pred CCHHHHHHHHHHHhccCCh
Q 017743 154 PDIITFNLLIDSYGKRQAF 172 (366)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~ 172 (366)
++..+-...+.++.+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~ 111 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDE 111 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHHhCcH
Confidence 3444444445555554443
No 314
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=39.86 E-value=58 Score=26.64 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=20.1
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHH
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELS 253 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 253 (366)
....++.-|...|+.++|...++++.
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 35667777888889998888887775
No 315
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=39.14 E-value=1e+02 Score=21.96 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=23.6
Q ss_pred CcHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhcCChhHHHHHHHHhh
Q 017743 240 DNVSRAREIFDELSKLGKDM--KVSTLNAMLE-A-----YCMNGLPTEADLLFENSH 288 (366)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~~~ 288 (366)
|++-+|-++|+.+=.....+ ....|..||+ . ..+.|+...|..++.+..
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555555555554433333 3344444444 1 123455555555555543
No 316
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=39.00 E-value=51 Score=22.71 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=19.0
Q ss_pred HHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 017743 234 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 276 (366)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 276 (366)
..+...+..-.|.++++.+.+.++..+..|.-.-+..+...|-
T Consensus 21 ~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 21 AALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3333333344455555555544444444444444444444443
No 317
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=38.84 E-value=1.2e+02 Score=22.57 Aligned_cols=34 Identities=9% Similarity=-0.011 Sum_probs=17.9
Q ss_pred cCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 017743 204 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 238 (366)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (366)
..+.+.|+-++.+|++.| .|....-..++.+...
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsED 60 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYED 60 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Confidence 356666666666666666 4444333444444333
No 318
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=38.74 E-value=42 Score=19.17 Aligned_cols=29 Identities=3% Similarity=0.177 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 017743 103 DQVNALFKELHESILAPDIYTYNGVMDAY 131 (366)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 131 (366)
++|.+.|.+|++..-.++.-+|...|+..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34555555555443333445555555555
No 319
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=38.44 E-value=60 Score=22.34 Aligned_cols=47 Identities=13% Similarity=0.161 Sum_probs=28.8
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc
Q 017743 160 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 206 (366)
Q Consensus 160 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 206 (366)
..++..+...++.-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 34555555555566677777777666666666666555666655553
No 320
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=37.51 E-value=1.1e+02 Score=21.81 Aligned_cols=49 Identities=8% Similarity=0.041 Sum_probs=24.7
Q ss_pred CChhHHHHHHHHHHhcCCCC--CHHHHHHHHH-H-----HHhcCcHhHHHHHHHHHH
Q 017743 170 QAFDKMEQVFKSLMHSKEKP--TLPTFNSMII-N-----YGKARLQGKAEYVFQKMT 218 (366)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~~~ 218 (366)
|++=+|-++++..-.....+ ....|..||+ . ..+.|+...|..++.+..
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66666666666655443333 3344444444 1 223455555555555544
No 321
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=37.44 E-value=1.2e+02 Score=22.19 Aligned_cols=142 Identities=11% Similarity=-0.083 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 017743 189 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 268 (366)
Q Consensus 189 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 268 (366)
++...-...+.++...++.+.. ..+..+.. .++..+-...+.++...++.+ +...+..+.+ .++..+-...+
T Consensus 62 ~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 133 (211)
T 3ltm_A 62 EDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAA 133 (211)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHH
Confidence 3444444455555555543322 22222222 345555555555555555532 2333333332 24555666666
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcccc
Q 017743 269 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLA 346 (366)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 346 (366)
.++...|..+ +...+..+.+ .++..+-...+.++.+.+. ..+...+..+.+. ++...-...+.++...+.
T Consensus 134 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 134 FALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC---
T ss_pred HHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcCC
Confidence 6666666543 3344444443 3466666666677776665 3455555555542 345555555555555443
No 322
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=36.66 E-value=83 Score=20.15 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=17.9
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHhhc
Q 017743 280 ADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 310 (366)
Q Consensus 280 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 310 (366)
|.++.+++...|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4455555555566666666666666555544
No 323
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=36.35 E-value=62 Score=25.39 Aligned_cols=26 Identities=27% Similarity=0.121 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 017743 91 ILLRACAQARNVDQVNALFKELHESILAPD 120 (366)
Q Consensus 91 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 120 (366)
+.+...+..|+.+-+ +.+.+.|..++
T Consensus 64 t~L~~A~~~g~~~~v----~~Ll~~ga~~~ 89 (285)
T 3kea_A 64 FPLHQAATLEDTKIV----KILLFSGLDDS 89 (285)
T ss_dssp CHHHHHTTSSSCHHH----HHHHHTTCCTT
T ss_pred CHHHHHHHcCCHHHH----HHHHHCCCCCC
Confidence 344445556665433 33344454433
No 324
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=36.02 E-value=1.2e+02 Score=21.98 Aligned_cols=26 Identities=19% Similarity=-0.077 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHH
Q 017743 297 STYKLLYKAYTKANMKELVQKLLKRM 322 (366)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~m 322 (366)
..|+.+...|...|+.++|+..+..-
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 45566677788889999998887653
No 325
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=35.86 E-value=1.2e+02 Score=21.72 Aligned_cols=72 Identities=10% Similarity=0.132 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 017743 82 CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD-IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 156 (366)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 156 (366)
...|.......|...-..++ +..+|..|...|+-.. ..-|......+-..|++.+|.++|..-.+.+-.|-.
T Consensus 59 YknD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 59 YYSDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp GTTCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred hccCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 35566555554433333333 5556666666654433 233455555566677777777777777766666543
No 326
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=35.78 E-value=2.5e+02 Score=25.36 Aligned_cols=117 Identities=6% Similarity=-0.062 Sum_probs=78.0
Q ss_pred CcHhHHHHHHHHHHhCC-CCCCH--HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 017743 205 RLQGKAEYVFQKMTAMK-YTPSF--ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 281 (366)
Q Consensus 205 ~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 281 (366)
.+.+.|...+....... ..+.. .....+.......+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 47788999998876433 22221 233444545555563456666666654433 24444555555666789999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 017743 282 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 282 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 324 (366)
..|..|..... .......-+.+++...|+.++|..+|..+.+
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999876422 2455566777888999999999999999875
No 327
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=35.78 E-value=1.3e+02 Score=22.25 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=9.4
Q ss_pred CcHhHHHHHHHHHHhCCCCC
Q 017743 205 RLQGKAEYVFQKMTAMKYTP 224 (366)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~ 224 (366)
.+.+.|+-++.+|++.|-.|
T Consensus 21 SDpDAAly~LaRMl~~GEDp 40 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDP 40 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44444555555554444333
No 328
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=34.53 E-value=43 Score=21.25 Aligned_cols=29 Identities=7% Similarity=-0.049 Sum_probs=14.1
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHhhc
Q 017743 315 VQKLLKRMEQNGIVPNKRFFLEALETFSS 343 (366)
Q Consensus 315 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 343 (366)
|.+.|.++.+.|..|+...+..+..+...
T Consensus 36 a~~ay~rLk~~~~~~~~~~L~aL~gAi~G 64 (93)
T 3mab_A 36 SKEAFLRIWENDSSVCMSELYALEGAVQG 64 (93)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHcC
Confidence 44445555555555555444444444433
No 329
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=34.38 E-value=66 Score=21.80 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 017743 172 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 204 (366)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 204 (366)
.-.|.++++.+.+.+...+..|....+..+...
T Consensus 26 ~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 58 (131)
T 2o03_A 26 FRSAQELHDELRRRGENIGLTTVYRTLQSMASS 58 (131)
T ss_dssp CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 333444444444433333333333334444333
No 330
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=34.23 E-value=45 Score=25.02 Aligned_cols=21 Identities=5% Similarity=-0.007 Sum_probs=13.3
Q ss_pred HHHHhhchHHHHHHHHHHHHh
Q 017743 304 KAYTKANMKELVQKLLKRMEQ 324 (366)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~m~~ 324 (366)
......|+...+.++.+.+.+
T Consensus 215 ~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 215 QCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 334556677777777776665
No 331
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=34.10 E-value=1.5e+02 Score=26.37 Aligned_cols=51 Identities=8% Similarity=0.188 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccccc
Q 017743 295 DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 347 (366)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 347 (366)
+..-...++..|.+.|-.+.|.++++.+-.+-+. +...+ ..|..|++++..
T Consensus 515 Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~ 565 (570)
T 3f3f_C 515 TNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKY 565 (570)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-----------------------
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCCh
Confidence 3444555666666666666666666665544322 22233 555555555543
No 332
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=34.02 E-value=16 Score=28.19 Aligned_cols=55 Identities=13% Similarity=-0.037 Sum_probs=31.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChh-------hHHHHHHHHH--hcCCHHHHHHHHHHH
Q 017743 93 LRACAQARNVDQVNALFKELHESILAPDIY-------TYNGVMDAYG--KNGMIKEMESVLSRM 147 (366)
Q Consensus 93 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~ 147 (366)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 344556788887777777777766555432 2233333332 556666666666554
No 333
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=33.82 E-value=2.2e+02 Score=24.29 Aligned_cols=54 Identities=11% Similarity=0.050 Sum_probs=34.4
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc-----HhHHHHHHHHHHhCC
Q 017743 168 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL-----QGKAEYVFQKMTAMK 221 (366)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~ 221 (366)
+..+.+.|+.++.+|.+.|..|....-..+..+....|. ...|...++.....|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 456788888888888887776655555555555554443 234555566666666
No 334
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=33.73 E-value=85 Score=20.84 Aligned_cols=67 Identities=9% Similarity=-0.002 Sum_probs=28.1
Q ss_pred ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCH
Q 017743 26 QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 102 (366)
Q Consensus 26 ~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 102 (366)
.+.+|+.-+++.... .+|......++..+- -.++.++++.....+..|+ .+.++...++...+.|-+
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe------~t~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI 69 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFE------FTFELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLL 69 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCC
Confidence 345555555555433 234444444444332 1144444444444433333 233334444444444433
No 335
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=33.42 E-value=1e+02 Score=22.36 Aligned_cols=55 Identities=11% Similarity=0.011 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHH
Q 017743 260 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 315 (366)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 315 (366)
....++.++..++...-.+.++..+.++...|. .+..+|-.-++.+++..-+..|
T Consensus 110 ~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaReQF~~ra 164 (174)
T 2p22_A 110 KTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQQFLVRW 164 (174)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777766667777777777776663 4666666666666665544433
No 336
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=33.20 E-value=44 Score=19.05 Aligned_cols=21 Identities=10% Similarity=0.093 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHHHHHcC-CCCC
Q 017743 100 RNVDQVNALFKELHESI-LAPD 120 (366)
Q Consensus 100 ~~~~~a~~~~~~~~~~~-~~~~ 120 (366)
-+++.|...|.++...| ++|+
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHH
Confidence 35777777777766544 4443
No 337
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=31.69 E-value=1.6e+02 Score=21.91 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=17.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 017743 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 168 (366)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (366)
..+.+.|+-.+..|.+.| .|.-..-..++-+.-.
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsED 60 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYED 60 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Confidence 456666666666666666 4444443444444333
No 338
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.12 E-value=1.2e+02 Score=20.27 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=26.1
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 017743 72 YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 115 (366)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 115 (366)
+|+.+.+ ..+.|++..--.-+..+...++++.|.++...+...
T Consensus 48 LfdkLn~-~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAG-GKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHH-TCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhc-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4444444 445444444334445566778888888888777653
No 339
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=30.96 E-value=35 Score=24.83 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=9.5
Q ss_pred HHHhcCCHHHHHHHHH
Q 017743 130 AYGKNGMIKEMESVLS 145 (366)
Q Consensus 130 ~~~~~~~~~~a~~~~~ 145 (366)
..+..|+.+.+..++.
T Consensus 11 ~A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 11 EAANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHHTTCHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHH
Confidence 3445667766666654
No 340
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=30.58 E-value=1.7e+02 Score=21.94 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=16.8
Q ss_pred CcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 017743 205 RLQGKAEYVFQKMTAMKYTPSFITYECIITMY 236 (366)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (366)
.+.+.|+-++.+|++.|-.|....-..++.+.
T Consensus 49 SDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55666666666666665444443334444333
No 341
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=30.11 E-value=1.6e+02 Score=21.43 Aligned_cols=29 Identities=0% Similarity=-0.315 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHhC
Q 017743 192 PTFNSMIINYGKARLQGKAEYVFQKMTAM 220 (366)
Q Consensus 192 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 220 (366)
..++.+...|.+.|+.++|+..+..--..
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 34666667777888888888887765443
No 342
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=30.10 E-value=49 Score=20.12 Aligned_cols=36 Identities=17% Similarity=0.068 Sum_probs=20.6
Q ss_pred cccccccCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 017743 2 QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEM 37 (366)
Q Consensus 2 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 37 (366)
.+-++++|++.||+-+.+.+-+..-..++..+..++
T Consensus 27 ~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 27 QRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp TTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred hhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345667777777776666555444444555544443
No 343
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.05 E-value=28 Score=26.16 Aligned_cols=14 Identities=7% Similarity=0.107 Sum_probs=6.2
Q ss_pred HhhchHHHHHHHHH
Q 017743 307 TKANMKELVQKLLK 320 (366)
Q Consensus 307 ~~~~~~~~a~~~~~ 320 (366)
.+.|+.+-+..+++
T Consensus 218 ~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 218 KQRKNVWMINHLQE 231 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 44455544443333
No 344
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=29.55 E-value=57 Score=26.64 Aligned_cols=95 Identities=13% Similarity=0.049 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 017743 84 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYT--YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNL 161 (366)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (366)
.|..-++.| ...+..|+.+.+..++ +.|..++... -.+.+...+..|+.+-+.-+++ .|..++...-.+
T Consensus 16 ~d~~g~t~L-~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t 86 (364)
T 3ljn_A 16 SDDENMEKI-HVAARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS----VGEVHSLWHGQK 86 (364)
T ss_dssp CCHHHHHHH-HHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHH----HCCCCCCBTTBC
T ss_pred cCCCCCCHH-HHHHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH----CCCCccccCCCC
Confidence 344444444 3444567765544444 4454333221 1223444455566654443333 333322211122
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCC
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHSKE 187 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~ 187 (366)
.+...+..|+.+-+..+++.....|.
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQ 112 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCC
Confidence 33334456777666666665433333
No 345
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=29.20 E-value=1.8e+02 Score=21.63 Aligned_cols=33 Identities=12% Similarity=0.015 Sum_probs=17.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 017743 134 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 166 (366)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (366)
..+.+.|+-.+..|.+.|-.|.-..-..++-+.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 456666666666666666554444444444333
No 346
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=29.20 E-value=2.8e+02 Score=23.98 Aligned_cols=142 Identities=11% Similarity=-0.056 Sum_probs=87.8
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 017743 169 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 248 (366)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 248 (366)
..+.+.|.++-.+. |.+--...|..-...+...|++++|.++-....+ |+--+..|.+.+-.+=...|+..-.+..
T Consensus 342 l~n~~lA~~lA~R~---~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMAVRN---NLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHHHHT---TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHHHhc---CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 35666666655443 4444455566667778888888888877665443 3455677777777666667777778888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 017743 249 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 323 (366)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 323 (366)
|..+.+.|. .+..---.+++.-...|+.+-..+.+.+ ..+..+...=..+ +..+...|..+|.+..
T Consensus 418 F~~Ll~~g~-Ln~~ESlEl~r~vL~q~r~~llekWl~e---~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 418 FGILLDQGQ-LNKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEELGDLV-----KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHHHHHHH-----HHHCSHHHHHHHHHHC
T ss_pred HHHHhccCc-cchHHhhHHhHHHHhccHHHHHHHHHhc---CCccccHHhHhhh-----hhcCHHHHHHHHHHcC
Confidence 888887763 3554444566666677776666665543 2344444432222 4445666777766554
No 347
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.10 E-value=1.9e+02 Score=21.96 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 017743 244 RAREIFDELSKLGKDM-KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 294 (366)
Q Consensus 244 ~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 294 (366)
....+|..|...|+.. -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3334455554443321 23344445555555555555555555555444444
No 348
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=28.56 E-value=1.1e+02 Score=20.50 Aligned_cols=52 Identities=15% Similarity=0.029 Sum_probs=36.1
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 017743 229 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 283 (366)
Q Consensus 229 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 283 (366)
|.-.|...+..++.+-|.++++...+.| +...|.+.+-.|...=+++-++++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 3445666667777777888888777766 667777777777776666666554
No 349
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=28.32 E-value=2e+02 Score=21.88 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=46.4
Q ss_pred hhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChh
Q 017743 277 PTEADLLFENSHNMGVTPD-SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 332 (366)
Q Consensus 277 ~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 332 (366)
.+.+..+|..|...|+--. ...|......+...|++.+|..+|+.-++.+-.|-..
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 3577889999988876544 5667888888999999999999999999988888654
No 350
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.03 E-value=2.4e+02 Score=22.92 Aligned_cols=25 Identities=8% Similarity=0.179 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 017743 89 YNILLRACAQARNVDQVNALFKELH 113 (366)
Q Consensus 89 ~~~l~~~~~~~~~~~~a~~~~~~~~ 113 (366)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4667778888888888888877764
No 351
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=27.87 E-value=43 Score=25.70 Aligned_cols=31 Identities=13% Similarity=0.009 Sum_probs=23.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCChh
Q 017743 17 LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPS 47 (366)
Q Consensus 17 li~~~~~~~~~~~A~~~~~~~~~~g~~p~~~ 47 (366)
.+...++.|+.+....+++.+.+.|..++..
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~ 38 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDE 38 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchh
Confidence 4556778899999999999888877666533
No 352
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=27.87 E-value=1.8e+02 Score=21.49 Aligned_cols=19 Identities=11% Similarity=0.123 Sum_probs=11.4
Q ss_pred HHHHHHhcCChhHHHHHHH
Q 017743 17 LIAVMGKKGQTRLAMWLFS 35 (366)
Q Consensus 17 li~~~~~~~~~~~A~~~~~ 35 (366)
.+...++.|+.+.+..+++
T Consensus 6 ~L~~A~~~g~~~~v~~Ll~ 24 (232)
T 2rfa_A 6 PLLLAAKENDVQALSKLLK 24 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3555667788665555543
No 353
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=27.24 E-value=2.5e+02 Score=22.81 Aligned_cols=76 Identities=9% Similarity=0.035 Sum_probs=46.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC-HHHH--HHHHHHH----HhcCChhHHHHHH
Q 017743 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK-VSTL--NAMLEAY----CMNGLPTEADLLF 284 (366)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~--~~li~~~----~~~g~~~~a~~~~ 284 (366)
++++.+.+.++.|...++..++..+.+.=.++.+..+|+.+...|.... ...+ -+++..+ ....++++...++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 4455566677777777778888877777778888888888887764432 1222 2222221 2245666666665
Q ss_pred HHh
Q 017743 285 ENS 287 (366)
Q Consensus 285 ~~~ 287 (366)
+.+
T Consensus 310 ~~~ 312 (345)
T 2qfz_A 310 QNL 312 (345)
T ss_dssp TSC
T ss_pred HcC
Confidence 543
No 354
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=26.70 E-value=2.5e+02 Score=22.62 Aligned_cols=26 Identities=15% Similarity=0.043 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHH
Q 017743 155 DIITFNLLIDSYGKRQAFDKMEQVFK 180 (366)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~a~~~~~ 180 (366)
++.....+...|.+.+++.+|...|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 55666666677777777777766653
No 355
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.36 E-value=61 Score=18.00 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=10.9
Q ss_pred HHHHhhch--HHHHHHHHHHH
Q 017743 304 KAYTKANM--KELVQKLLKRM 322 (366)
Q Consensus 304 ~~~~~~~~--~~~a~~~~~~m 322 (366)
.++.+.|. .+.|++++.+|
T Consensus 28 ~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 28 RALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHh
Confidence 34444554 66666666665
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.08 E-value=4.5e+02 Score=25.28 Aligned_cols=29 Identities=10% Similarity=-0.051 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHhC
Q 017743 297 STYKLLYKAYTKANMKELVQKLLKRMEQN 325 (366)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 325 (366)
.-|..++..|.+.+-++.+.++-+...+.
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 35677777888888888888877777754
No 357
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=26.04 E-value=2.7e+02 Score=27.89 Aligned_cols=78 Identities=12% Similarity=0.088 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHH
Q 017743 242 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 321 (366)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (366)
.+...+.|.++.+.--.-|.......+......+++-.|++++.++.+.. |....|..++..+...|- +....+.++
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~w-~h~~~~~~~ 1341 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALGH-EHIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHSC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcCC-HHHHHHHHh
Confidence 44455556666554111122222222333335778888888888887653 677777777766655553 333334444
Q ss_pred H
Q 017743 322 M 322 (366)
Q Consensus 322 m 322 (366)
+
T Consensus 1342 ~ 1342 (1354)
T 3lxu_X 1342 M 1342 (1354)
T ss_dssp H
T ss_pred h
Confidence 4
No 358
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=25.22 E-value=1.3e+02 Score=18.97 Aligned_cols=23 Identities=9% Similarity=-0.136 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhchHHHHHHHHHH
Q 017743 299 YKLLYKAYTKANMKELVQKLLKR 321 (366)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~ 321 (366)
+......+.+.|++++|++..+.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHH
Confidence 34445556666666666554443
No 359
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=25.20 E-value=4.5e+02 Score=25.07 Aligned_cols=48 Identities=6% Similarity=-0.023 Sum_probs=20.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 017743 132 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 182 (366)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 182 (366)
.+.|..++-..+++...... +..--..++.+++...+.....++++..
T Consensus 737 ~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~aL~~~~d~~~l~~~L~~~ 784 (909)
T 4fke_A 737 IAQGGQDQWDFAWGQLQQAQ---LVNEADKLRSALACSNEVWLLNRYLGYT 784 (909)
T ss_dssp HHHSCHHHHHHHHHHHHHCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHccC---CHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 34444444444444444321 2222334444444444544444444444
No 360
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.99 E-value=1.9e+02 Score=21.29 Aligned_cols=19 Identities=11% Similarity=-0.048 Sum_probs=12.9
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 017743 18 IAVMGKKGQTRLAMWLFSE 36 (366)
Q Consensus 18 i~~~~~~~~~~~A~~~~~~ 36 (366)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 5556677887777776654
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.84 E-value=4.7e+02 Score=25.12 Aligned_cols=48 Identities=13% Similarity=-0.027 Sum_probs=33.3
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcC
Q 017743 228 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKV----STLNAMLEAYCMNG 275 (366)
Q Consensus 228 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g 275 (366)
-|..++..+.+.+.++.+.++-+...+.--.-|. ..|+.++++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5788888888889988888888777754211122 36777777776654
No 362
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=24.79 E-value=1.1e+02 Score=24.97 Aligned_cols=45 Identities=22% Similarity=0.355 Sum_probs=36.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 017743 212 YVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 256 (366)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 256 (366)
++++.+.+.|+.|...++..++..+...=.++.+.++|+.+...|
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 455667777888888888888888888788899999999988776
No 363
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=24.35 E-value=2.2e+02 Score=21.15 Aligned_cols=45 Identities=13% Similarity=0.282 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCHH-HH-----HHHHHHHHhcCCHHHHHHHHHHHH
Q 017743 66 LAKALGYFQKMKGMERCKPNIV-TY-----NILLRACAQARNVDQVNALFKELH 113 (366)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~-~~-----~~l~~~~~~~~~~~~a~~~~~~~~ 113 (366)
++.|+.+|+.+.... ++.. .- -..+..|.+.|.+++|.+++++..
T Consensus 94 LESAl~v~~~I~~e~---~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 94 LESALMIWGSIEKEH---DKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHHHTTSCSCC---CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHh
Confidence 567777777666422 1111 11 122334566666666666666644
No 364
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.59 E-value=2.4e+02 Score=21.21 Aligned_cols=46 Identities=20% Similarity=0.141 Sum_probs=24.8
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 017743 124 YNGVMDAYG---KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR 169 (366)
Q Consensus 124 ~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (366)
+..+|+++. +..+.+.|+-.+..|.+.|-.|.-..-..++-+.-..
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDI 83 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDI 83 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 344444443 3456666666667776666555544444444444333
No 365
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.11 E-value=3.9e+02 Score=23.51 Aligned_cols=65 Identities=12% Similarity=0.005 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHhCC-CCCCH--HHH-HHHHHHhhccCcHHHHHHHHHHHHhC
Q 017743 191 LPTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSF--ITY-ECIITMYGYCDNVSRAREIFDELSKL 255 (366)
Q Consensus 191 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 255 (366)
...++.++..|...+.++.|..+..+..--. ..++. ..| -.+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4567778888888888888888888765211 01221 122 23344555677888888887777654
No 366
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=23.06 E-value=3.4e+02 Score=22.83 Aligned_cols=170 Identities=9% Similarity=-0.039 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCC--CChhhHHHHHHHHhhchHHHHHHHHHHHHHHHHhcCCCCCC
Q 017743 10 DTGIYSKLIAVMGKKGQ---TRLAMWLFSEMRNSGCR--PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP 84 (366)
Q Consensus 10 ~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~g~~--p~~~~~~~ll~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 84 (366)
+...-..++...|..|+ .++|.+.|+.....+.. +++..-..+...-++. ...++..++.|.. ..
T Consensus 196 ~~~lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~~~---~~~~~~l~~~y~~-------s~ 265 (419)
T 3rjo_A 196 ERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQS---TEGWDFLYSKYQF-------SL 265 (419)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHTTS---HHHHHHHHHHHHH-------CC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeeeCC---HHHHHHHHHHHhc-------CC
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH---HHCCCCCCHHHHHH
Q 017743 85 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM---KSNQCKPDIITFNL 161 (366)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~ 161 (366)
+..--..++.+++...+.....++++......+.........+........-.+.+.+.+.+= ....+.++...+..
T Consensus 266 ~~~ek~~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~~~~~v~~n~~g~~~aw~fl~~nw~~l~~~~~~~~~~~~~ 345 (419)
T 3rjo_A 266 SSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAH 345 (419)
T ss_dssp CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHHHHHHHHHTSTTTHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhCcCchhHHH
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCC
Q 017743 162 LIDSYGKRQAFDKMEQVFKSLMHSKEKP 189 (366)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 189 (366)
++......-.-++-.+-++.+.+....+
T Consensus 346 ~i~~~~~~~~t~~~l~e~~~Ff~~~~~~ 373 (419)
T 3rjo_A 346 MVMGTTNQFSTRTRLEEVKGFFSSLKEN 373 (419)
T ss_dssp HHHHTTTTCCSHHHHHHHHHHHHTTTTC
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHhCccc
No 367
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=23.02 E-value=1.7e+02 Score=20.91 Aligned_cols=23 Identities=9% Similarity=0.371 Sum_probs=12.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 017743 90 NILLRACAQARNVDQVNALFKEL 112 (366)
Q Consensus 90 ~~l~~~~~~~~~~~~a~~~~~~~ 112 (366)
..++.-|...++.++|...++++
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL 36 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDL 36 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34455555555555555555554
No 368
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.78 E-value=88 Score=17.79 Aligned_cols=16 Identities=13% Similarity=-0.153 Sum_probs=7.0
Q ss_pred CChhHHHHHHHHhhhC
Q 017743 275 GLPTEADLLFENSHNM 290 (366)
Q Consensus 275 g~~~~a~~~~~~~~~~ 290 (366)
|+.+.|+..+-+|...
T Consensus 37 gdvd~aI~~LL~m~~~ 52 (59)
T 1wgl_A 37 GNKDAAINSLLQMGEE 52 (59)
T ss_dssp TCHHHHHHHHHHSSCC
T ss_pred CCHHHHHHHHHcCcCC
Confidence 4444444444444433
No 369
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=22.55 E-value=71 Score=17.39 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=18.3
Q ss_pred hchHHHHHHHHHHHHhCCCCCChh
Q 017743 309 ANMKELVQKLLKRMEQNGIVPNKR 332 (366)
Q Consensus 309 ~~~~~~a~~~~~~m~~~g~~~~~~ 332 (366)
..+...|+++++++.+.|-.|+..
T Consensus 6 ~RDv~RaiELle~lq~sgevp~~K 29 (53)
T 1zl8_A 6 ERDVQRILELMEHVQKTGEVNNAK 29 (53)
T ss_dssp HHHHHHHHHHHHHHGGGSSSTHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcHH
Confidence 356778888999988888777654
No 370
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=21.57 E-value=70 Score=23.81 Aligned_cols=23 Identities=9% Similarity=0.026 Sum_probs=10.4
Q ss_pred HHHHhhchHHHHHHHHHHHHhCCCCCC
Q 017743 304 KAYTKANMKELVQKLLKRMEQNGIVPN 330 (366)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~m~~~g~~~~ 330 (366)
...+..|+.+-+. .+.+.|..++
T Consensus 182 ~~A~~~~~~~~v~----~Ll~~g~~~~ 204 (240)
T 3eu9_A 182 HWAVLAGNTTVIS----LLLEAGANVD 204 (240)
T ss_dssp HHHHHHTCHHHHH----HHHHHTCCTT
T ss_pred HHHHHcCCHHHHH----HHHHcCCCCC
Confidence 3344556655333 3334454443
No 371
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=21.43 E-value=2.3e+02 Score=20.32 Aligned_cols=138 Identities=12% Similarity=-0.072 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017743 190 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 269 (366)
Q Consensus 190 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 269 (366)
+...-...+.++...+..+... .+..+.. .++...-...+.++...++.+ +...+..+.. .++..+-...+.
T Consensus 58 ~~~vr~~a~~~L~~~~~~~~~~-~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 129 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDERAVE-PLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAF 129 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHH-HHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHHHHH-HHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 4444444444555555443322 2222222 345555555555555555532 2222333332 235555556666
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc
Q 017743 270 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 343 (366)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 343 (366)
++.+.+..+ +...+..+.. .++..+-...+.++...|.. .+...+..+.+. ++...-...+.++.+
T Consensus 130 aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 130 ALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE-RVRAAMEKLAET---GTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-HHHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred HHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-hHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 666666543 3333444433 24566666666666666653 344455554432 344444444444443
No 372
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=20.84 E-value=1.4e+02 Score=18.92 Aligned_cols=23 Identities=9% Similarity=-0.029 Sum_probs=10.7
Q ss_pred HHHHHHHHHhCCCCCChhHHHHH
Q 017743 315 VQKLLKRMEQNGIVPNKRFFLEA 337 (366)
Q Consensus 315 a~~~~~~m~~~g~~~~~~~~~~l 337 (366)
|.+.|.++.+.|..|....+..+
T Consensus 36 a~~ay~rL~~~~~~~c~~~L~aL 58 (93)
T 3bqs_A 36 SKEAFLRIWENDSSVCMSELYAL 58 (93)
T ss_dssp HHHHHHHHHTTCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHH
Confidence 44444455444444444444433
No 373
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=20.62 E-value=1.6e+02 Score=19.84 Aligned_cols=46 Identities=11% Similarity=-0.028 Sum_probs=21.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHH
Q 017743 128 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 176 (366)
Q Consensus 128 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 176 (366)
|...+..++.+-|.++++-..+.| +...|.+++-.|...=+++.++
T Consensus 39 ietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVL 84 (125)
T 3qil_A 39 MQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVL 84 (125)
T ss_dssp HHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHH
Confidence 334444455555555555554443 4444444444444444444443
Done!