BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017744
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ELB|A Chain A, Human Ctp: Phosphoethanolamine Cytidylyltransferase In
Complex With Cmp
Length = 341
Score = 271 bits (692), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 137/297 (46%), Positives = 198/297 (66%), Gaps = 24/297 (8%)
Query: 66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
VRV+ DGC+D +HYGH+N LRQA+A GD L+VGV +DEEI +KGPPV + EER V
Sbjct: 8 VRVWCDGCYDXVHYGHSNQLRQARAXGDYLIVGVHTDEEIAKHKGPPVFTQEERYKXVQA 67
Query: 126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
+KWVDEV+ APY T + +++ + D+ +HG+D L DG D Y K+ GRY++
Sbjct: 68 IKWVDEVVPAAPYVTTLETLDK----YNCDFCVHGNDITLTVDGRDTYEEVKQAGRYREC 123
Query: 186 KRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNA--SLP--RDPLRAIQSKDAHLS 234
KRT+GVS+TD+VGR L SS E + ++ ++ P R+P + S
Sbjct: 124 KRTQGVSTTDLVGRXLLVTKAHHSSQEXSSEYREYADSFGKCPGGRNPWTGV-------S 176
Query: 235 QFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYT 292
QFL TS++I+QF++ K P P V+Y+ GAFDLFH GHV+ L+K +L + +++ G++
Sbjct: 177 QFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHF 236
Query: 293 DQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 349
DQ V+ ++G +PI +LHER+LSVLACRYV EV+IGAP+ VT ++++ F + LV HG
Sbjct: 237 DQEVNHYKGKNYPIXNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVCHG 293
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 253 GPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHER 312
G A V+ DG +D H GH L++AR GD+L+VG++TD+ +++H+G P+ ER
Sbjct: 4 GRRAVRVWCDGCYDXVHYGHSNQLRQARAXGDYLIVGVHTDEEIAKHKGP--PVFTQEER 61
Query: 313 SLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGT 350
V A ++VDEV+ AP+ T + + +N VHG
Sbjct: 62 YKXVQAIKWVDEVVPAAPYVTTLETLDKYNCDFCVHGN 99
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 78/142 (54%), Gaps = 11/142 (7%)
Query: 68 VYMDGCFDLMHYGHANALRQAKALGDE--LVVGVVSDEEIIANKGP--PVLSMEERLALV 123
+Y+ G FDL H GH + L + L + ++ G+ D+E+ KG P+ ++ ER V
Sbjct: 201 IYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGKNYPIXNLHERTLSV 260
Query: 124 SGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPD--GTDAYALAKKVGR 181
++V EV+ APYA+T + ++ K+D + HG ++PD G+D Y K+ G
Sbjct: 261 LACRYVSEVVIGAPYAVTAELLSHF----KVDLVCHGKTE-IIPDRDGSDPYQEPKRRGI 315
Query: 182 YKQIKRTEGVSSTDIVGRILSS 203
++QI +++ IV RI+++
Sbjct: 316 FRQIDSGSNLTTDLIVQRIITN 337
>pdb|3HL4|A Chain A, Crystal Structure Of A Mammalian Ctp:phosphocholine
Cytidylyltransferase With Cdp-Choline
pdb|3HL4|B Chain B, Crystal Structure Of A Mammalian Ctp:phosphocholine
Cytidylyltransferase With Cdp-Choline
Length = 236
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 82/138 (59%), Gaps = 6/138 (4%)
Query: 66 VRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
VRVY DG FDL H GHA AL QAK L L+VGV SDE KG V++ ER V
Sbjct: 77 VRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAV 136
Query: 124 SGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYK 183
++VDEV+ NAP+ +T +F+ EH+ID++ H D P D Y K+ G +
Sbjct: 137 QHCRYVDEVVRNAPWTLTPEFLA----EHRIDFVAHDDIPYSSAGSDDVYKHIKEAGMFA 192
Query: 184 QIKRTEGVSSTDIVGRIL 201
+RTEG+S++DI+ RI+
Sbjct: 193 PTQRTEGISTSDIITRIV 210
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 5/113 (4%)
Query: 242 RIVQFSNCKG-PGPNARVVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSE 298
R+ C+G P VY DG FDLFH+GH L +A+ L +L+VG+ +D++
Sbjct: 61 RVTMEEACRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHN 120
Query: 299 HRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTV 351
+G +M+ +ER +V CRYVDEV+ APW +T + + I V H +
Sbjct: 121 FKG--FTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDI 171
>pdb|1COZ|A Chain A, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
Bacillus Subtilis
pdb|1COZ|B Chain B, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
Bacillus Subtilis
pdb|1N1D|A Chain A, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
pdb|1N1D|B Chain B, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
pdb|1N1D|C Chain C, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
pdb|1N1D|D Chain D, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
Length = 129
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 263 GAFDLFHAGHVEILKKARQLGDFLLVGIYTDQI-VSEHRGSYHPIMHLHERSLSVLACRY 321
G FDL H GH+++L++A+QLGD+L+V I TD+ + + + +YH H R L + RY
Sbjct: 8 GTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEH---RKLILETIRY 64
Query: 322 VDEVIIGAPWEVTKDMITTFNICLVVHG 349
VDEVI WE K I NI + V G
Sbjct: 65 VDEVIPEKNWEQKKQDIIDHNIDVFVMG 92
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 10/134 (7%)
Query: 67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
+V G FDL+H+GH L +AK LGD LVV + +DE + + S E R ++ +
Sbjct: 3 KVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETI 62
Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK 186
++VDEVI + +Q + +H ID + GD D + K +
Sbjct: 63 RYVDEVIPEKNWEQKKQDI----IDHNIDVFVMGD------DWEGKFDFLKDQCEVVYLP 112
Query: 187 RTEGVSSTDIVGRI 200
RTEG+S+T I I
Sbjct: 113 RTEGISTTKIKEEI 126
>pdb|2B7L|A Chain A, Crystal Structure Of Ctp:glycerol-3-Phosphate
Cytidylyltransferase From Staphylococcus Aureus
pdb|2B7L|B Chain B, Crystal Structure Of Ctp:glycerol-3-Phosphate
Cytidylyltransferase From Staphylococcus Aureus
pdb|2B7L|C Chain C, Crystal Structure Of Ctp:glycerol-3-Phosphate
Cytidylyltransferase From Staphylococcus Aureus
pdb|2B7L|D Chain D, Crystal Structure Of Ctp:glycerol-3-Phosphate
Cytidylyltransferase From Staphylococcus Aureus
Length = 132
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 263 GAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVS-EHRGSYHPIMHLHERSLSVLACRY 321
G +DL H GH+E+L++AR++GD+L+V + TD+ +H+ SY+ +R + + + RY
Sbjct: 8 GTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYD---YEQRKMMLESIRY 64
Query: 322 VDEVIIGAPWEVTKDMITTFNICLVVHG 349
VD VI W +D + F++ + V G
Sbjct: 65 VDLVIPEKGWGQKEDDVEKFDVDVFVMG 92
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
RV G +DL+HYGH LR+A+ +GD L+V + +DE E+R ++ +
Sbjct: 3 RVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLESI 62
Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK 186
++VD VI + E + + +D + G D + K +K
Sbjct: 63 RYVDLVIPEKGWGQKEDDVEKF----DVDVFVMG------HDWEGEFDFLKDKCEVIYLK 112
Query: 187 RTEGVSSTDI 196
RTEG+S+T I
Sbjct: 113 RTEGISTTKI 122
>pdb|3GLV|A Chain A, Crystal Structure Of The Lipopolysaccharide Core
Biosynthesis Protein From Thermoplasma Volcanium Gss1
pdb|3GLV|B Chain B, Crystal Structure Of The Lipopolysaccharide Core
Biosynthesis Protein From Thermoplasma Volcanium Gss1
Length = 143
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 40/68 (58%)
Query: 66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
+RV G FD++H GH + L+++K LGDELVV V D N P+ RLAL+S
Sbjct: 3 IRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISE 62
Query: 126 LKWVDEVI 133
LK VD I
Sbjct: 63 LKVVDRAI 70
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 263 GAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYV 322
G FD+ H GH+ LK++++LGD L+V + D + + G PI + R + + V
Sbjct: 9 GVFDILHLGHIHYLKESKKLGDELVVVVARDS-TARNNGKI-PIFDENSRLALISELKVV 66
Query: 323 DEVIIGAPWEVTKDMI 338
D I+G ++ K +I
Sbjct: 67 DRAILGHEGDMMKTVI 82
>pdb|3PXU|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Burkholderia Pseudomallei Bound
To Dephospho-Coenzyme A
Length = 170
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 72 GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE 131
G FD + GH + +R+A ++ D LVVGV A K P S+EER LK +E
Sbjct: 12 GTFDPLTRGHEDLVRRASSIFDTLVVGVADSR---AKK--PFFSLEER------LKIANE 60
Query: 132 VIANAP 137
V+ + P
Sbjct: 61 VLGHYP 66
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 251 GPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLH 310
GPG VY G FD GH +++++A + D L+VG V++ R P L
Sbjct: 1 GPGSMVVAVY-PGTFDPLTRGHEDLVRRASSIFDTLVVG------VADSRAK-KPFFSLE 52
Query: 311 ER 312
ER
Sbjct: 53 ER 54
>pdb|3K9W|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Burkholderia Pseudomallei With
Hydrolyzed 3'-Dephospho Coenzyme A
Length = 187
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 72 GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE 131
G FD + GH + +R+A ++ D LVVGV A K P S+EER LK +E
Sbjct: 29 GTFDPLTRGHEDLVRRASSIFDTLVVGVADSR---AKK--PFFSLEER------LKIANE 77
Query: 132 VIANAP 137
V+ + P
Sbjct: 78 VLGHYP 83
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 247 SNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPI 306
+ +GPG VY G FD GH +++++A + D L+VG V++ R P
Sbjct: 14 AQTQGPGSMVVAVY-PGTFDPLTRGHEDLVRRASSIFDTLVVG------VADSRAK-KPF 65
Query: 307 MHLHER 312
L ER
Sbjct: 66 FSLEER 71
>pdb|3GZS|A Chain A, Crystal Structure Of A Susd Superfamily Protein (Bf3413)
From Bacteroides Fragilis Nctc 9343 At 2.10 A Resolution
pdb|3GZS|B Chain B, Crystal Structure Of A Susd Superfamily Protein (Bf3413)
From Bacteroides Fragilis Nctc 9343 At 2.10 A Resolution
Length = 515
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%)
Query: 131 EVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEG 190
E+ ANAP +IT ++ N E K++ II + P+G +A+ ++ G +QI E
Sbjct: 397 ELSANAPSSITIRWENGATEEEKLERIITQKYLAIFPNGQEAWTEWRRTGYPRQIVVAEN 456
Query: 191 VSSTDIV 197
+++ ++
Sbjct: 457 KTNSAVL 463
>pdb|1F9A|A Chain A, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|B Chain B, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|C Chain C, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|D Chain D, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|E Chain E, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|F Chain F, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
Length = 168
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 260 YIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQ 294
+I G F FH GH+E++KK + D +++GI + Q
Sbjct: 4 FIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQ 38
>pdb|3N8H|A Chain A, Crystal Structure Of Pantoate-Beta-Alanine Ligase From
Franc Tularensis
pdb|3N8H|B Chain B, Crystal Structure Of Pantoate-Beta-Alanine Ligase From
Franc Tularensis
pdb|3QTT|A Chain A, Crystal Structure Of Pantoate-Beta-Alanine Ligase From
Francisella Tularensis Complexed With Beta-Gamma Atp And
Beta-Alanine
pdb|3QTT|B Chain B, Crystal Structure Of Pantoate-Beta-Alanine Ligase From
Francisella Tularensis Complexed With Beta-Gamma Atp And
Beta-Alanine
Length = 264
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 268 FHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVD 323
H GH+ ++KKA+ D ++V I+ + + Y + ++ + +LA VD
Sbjct: 35 LHNGHISLIKKAKSENDVVIVSIFVNPTQFNNPNDYQTYPNQLQQDIQILASLDVD 90
>pdb|1OD6|A Chain A, The Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Thermus Thermophilus In Complex
With 4'-Phosphopantetheine
Length = 160
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 72 GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
G FD + GH + +++A L +++ V V+ + + +G + S EERLA++
Sbjct: 7 GSFDPLTNGHLDVIQRASRLFEKVTVAVLENP---SKRGQYLFSAEERLAII 55
>pdb|3ND5|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|B Chain B, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|C Chain C, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|D Chain D, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|E Chain E, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|F Chain F, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND6|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|B Chain B, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|C Chain C, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|D Chain D, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|E Chain E, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|F Chain F, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND7|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|B Chain B, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|C Chain C, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|D Chain D, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|E Chain E, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|F Chain F, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
Length = 171
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 72 GCFDLMHYGHANALRQAKALGDELVVGV 99
G FD M GH N + ++ L DE+++GV
Sbjct: 9 GSFDPMTNGHLNLIERSAKLFDEVIIGV 36
>pdb|1VLH|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VLH|B Chain B, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VLH|C Chain C, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VLH|D Chain D, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VLH|E Chain E, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VLH|F Chain F, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
Length = 173
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 72 GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVS 124
G FD + GH + +++A ++ DELVV V + + + ++EER L+
Sbjct: 19 GSFDPITLGHVDIIKRALSIFDELVVLVTEN-----PRKKCMFTLEERKKLIE 66
>pdb|1OGC|A Chain A, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGC|B Chain B, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGC|C Chain C, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGC|D Chain D, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGC|E Chain E, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGD|A Chain A, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGD|B Chain B, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGD|C Chain C, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGD|D Chain D, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGD|E Chain E, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGE|A Chain A, The Structure Of Bacillus Subtilis Rbsd Complexed With
Ribose 5-Phosphate
pdb|1OGE|B Chain B, The Structure Of Bacillus Subtilis Rbsd Complexed With
Ribose 5-Phosphate
pdb|1OGE|C Chain C, The Structure Of Bacillus Subtilis Rbsd Complexed With
Ribose 5-Phosphate
pdb|1OGE|D Chain D, The Structure Of Bacillus Subtilis Rbsd Complexed With
Ribose 5-Phosphate
pdb|1OGE|E Chain E, The Structure Of Bacillus Subtilis Rbsd Complexed With
Ribose 5-Phosphate
pdb|1OGF|A Chain A, The Structure Of Bacillus Subtilis Rbsd Complexed With
Glycerol
pdb|1OGF|B Chain B, The Structure Of Bacillus Subtilis Rbsd Complexed With
Glycerol
pdb|1OGF|C Chain C, The Structure Of Bacillus Subtilis Rbsd Complexed With
Glycerol
pdb|1OGF|D Chain D, The Structure Of Bacillus Subtilis Rbsd Complexed With
Glycerol
pdb|1OGF|E Chain E, The Structure Of Bacillus Subtilis Rbsd Complexed With
Glycerol
Length = 131
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 19/88 (21%)
Query: 101 SDEEIIANKGPPV--------LSMEERL-------ALVSGLKWVDEVIANAPYAITEQ-- 143
+D+ +IA+ G PV LS++ L A+++ V++VIA A + Q
Sbjct: 21 TDKIVIADAGLPVPDGVLKIDLSLKPGLPAFQDTAAVLAEEMAVEKVIAAAEIKASNQEN 80
Query: 144 --FMNRLFNEHKIDYIIHGDDPCLLPDG 169
F+ LF+E +I+Y+ H + L D
Sbjct: 81 AKFLENLFSEQEIEYLSHEEFKLLTKDA 108
>pdb|3NV7|A Chain A, Crystal Structure Of H.Pylori Phosphopantetheine
Adenylyltransferase Mutant I4vN76Y
Length = 157
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVS 124
+V +Y G FD + GH + + ++ L ++L+V V ++ P+ S++ERL ++
Sbjct: 3 KVGIY-PGTFDPVTNGHIDIIHRSSELFEKLIVAVAH-----SSAKNPMFSLDERLKMIQ 56
>pdb|3OTW|A Chain A, Structural And Functional Studies Of Helicobacter Pylori
Wild-Type And Mutated Proteins Phosphopantetheine
Adenylyltransferase
pdb|3OTW|B Chain B, Structural And Functional Studies Of Helicobacter Pylori
Wild-Type And Mutated Proteins Phosphopantetheine
Adenylyltransferase
pdb|3OTW|C Chain C, Structural And Functional Studies Of Helicobacter Pylori
Wild-Type And Mutated Proteins Phosphopantetheine
Adenylyltransferase
pdb|3OTW|D Chain D, Structural And Functional Studies Of Helicobacter Pylori
Wild-Type And Mutated Proteins Phosphopantetheine
Adenylyltransferase
pdb|3OTW|E Chain E, Structural And Functional Studies Of Helicobacter Pylori
Wild-Type And Mutated Proteins Phosphopantetheine
Adenylyltransferase
pdb|3OTW|F Chain F, Structural And Functional Studies Of Helicobacter Pylori
Wild-Type And Mutated Proteins Phosphopantetheine
Adenylyltransferase
Length = 163
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 72 GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVS 124
G FD + GH + + ++ L ++L+V V ++ P+ S++ERL ++
Sbjct: 15 GTFDPVTNGHIDIIHRSSELFEKLIVAVAH-----SSAKNPMFSLDERLKMIQ 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,131,690
Number of Sequences: 62578
Number of extensions: 457821
Number of successful extensions: 1095
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1061
Number of HSP's gapped (non-prelim): 31
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)