Query 017744
Match_columns 366
No_of_seqs 374 out of 2673
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:03:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017744.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017744hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02406 ethanolamine-phosphat 100.0 3E-76 6.5E-81 588.0 31.9 341 10-354 2-349 (418)
2 KOG2803 Choline phosphate cyti 100.0 7.1E-76 1.5E-80 554.3 22.2 283 63-350 6-292 (358)
3 PTZ00308 ethanolamine-phosphat 100.0 3E-66 6.6E-71 511.0 31.7 282 62-353 8-289 (353)
4 cd02174 CCT CTP:phosphocholine 100.0 4.8E-31 1E-35 232.2 16.6 138 65-206 2-141 (150)
5 PLN02413 choline-phosphate cyt 100.0 4.3E-30 9.4E-35 243.3 16.7 141 61-205 23-167 (294)
6 COG0615 TagD Cytidylyltransfer 100.0 2.6E-30 5.6E-35 222.5 13.1 131 66-202 2-139 (140)
7 PLN02406 ethanolamine-phosphat 100.0 5.7E-29 1.2E-33 248.8 17.0 146 54-203 240-390 (418)
8 KOG2804 Phosphorylcholine tran 100.0 1.4E-29 3E-34 239.0 10.2 153 62-224 60-214 (348)
9 cd02173 ECT CTP:phosphoethanol 100.0 1.9E-28 4.1E-33 216.2 16.7 136 65-204 2-141 (152)
10 cd02170 cytidylyltransferase c 100.0 1.9E-27 4.1E-32 205.2 16.8 133 65-202 1-135 (136)
11 cd02172 RfaE_N N-terminal doma 100.0 2.4E-27 5.1E-32 207.4 16.5 135 65-204 4-143 (144)
12 PTZ00308 ethanolamine-phosphat 100.0 1.6E-27 3.5E-32 235.8 16.3 146 54-203 181-330 (353)
13 cd02173 ECT CTP:phosphoethanol 99.9 1.1E-27 2.4E-32 211.4 12.8 100 256-355 2-101 (152)
14 cd02174 CCT CTP:phosphocholine 99.9 8.1E-27 1.8E-31 205.4 12.7 98 256-355 2-101 (150)
15 TIGR02199 rfaE_dom_II rfaE bif 99.9 8.2E-26 1.8E-30 197.6 15.6 130 65-201 11-143 (144)
16 TIGR01518 g3p_cytidyltrns glyc 99.9 2E-25 4.3E-30 190.4 13.7 123 68-200 1-125 (125)
17 COG0615 TagD Cytidylyltransfer 99.9 5.9E-26 1.3E-30 195.6 9.7 98 257-355 2-99 (140)
18 cd02171 G3P_Cytidylyltransfera 99.9 7E-25 1.5E-29 187.5 15.6 128 65-202 1-128 (129)
19 PLN02413 choline-phosphate cyt 99.9 5.4E-25 1.2E-29 208.7 12.2 97 252-350 23-121 (294)
20 KOG2803 Choline phosphate cyti 99.9 9.4E-24 2E-28 200.6 7.9 95 257-353 9-103 (358)
21 PRK07143 hypothetical protein; 99.9 6.8E-22 1.5E-26 190.1 16.1 136 65-203 15-162 (279)
22 cd02064 FAD_synthetase_N FAD s 99.9 3.9E-22 8.5E-27 180.4 13.0 134 68-203 2-158 (180)
23 PRK11316 bifunctional heptose 99.9 2.1E-21 4.4E-26 199.1 15.1 133 64-202 339-473 (473)
24 PRK05627 bifunctional riboflav 99.9 5E-21 1.1E-25 186.5 15.2 135 67-203 15-173 (305)
25 PF06574 FAD_syn: FAD syntheta 99.8 1.4E-20 3.1E-25 166.9 9.4 130 64-195 4-157 (157)
26 COG0669 CoaD Phosphopantethein 99.8 3E-20 6.6E-25 161.9 10.4 88 256-350 2-90 (159)
27 TIGR00083 ribF riboflavin kina 99.8 7.3E-20 1.6E-24 176.9 13.7 134 68-203 1-156 (288)
28 COG2870 RfaE ADP-heptose synth 99.8 6.8E-20 1.5E-24 180.1 11.9 132 66-203 333-466 (467)
29 KOG2804 Phosphorylcholine tran 99.8 2.9E-20 6.4E-25 176.0 6.8 94 257-352 64-159 (348)
30 COG2870 RfaE ADP-heptose synth 99.8 1.9E-19 4.1E-24 177.0 10.4 100 256-356 332-431 (467)
31 TIGR01518 g3p_cytidyltrns glyc 99.8 4.4E-19 9.6E-24 151.2 10.7 95 259-355 1-95 (125)
32 cd02170 cytidylyltransferase c 99.8 9.2E-19 2E-23 151.0 12.1 98 256-356 1-98 (136)
33 TIGR02199 rfaE_dom_II rfaE bif 99.8 9.5E-19 2.1E-23 153.0 12.0 101 255-356 10-110 (144)
34 cd02172 RfaE_N N-terminal doma 99.8 1.5E-18 3.4E-23 151.7 12.7 99 255-356 3-101 (144)
35 COG0196 RibF FAD synthase [Coe 99.8 2.4E-18 5.2E-23 166.8 13.9 137 65-203 15-173 (304)
36 cd02171 G3P_Cytidylyltransfera 99.8 2.2E-18 4.7E-23 147.4 11.4 98 256-355 1-98 (129)
37 cd02039 cytidylyltransferase_l 99.8 6.8E-18 1.5E-22 144.5 11.3 130 68-199 2-143 (143)
38 PRK00777 phosphopantetheine ad 99.7 8.9E-18 1.9E-22 148.5 7.9 132 66-203 2-145 (153)
39 PRK11316 bifunctional heptose 99.7 2.3E-17 5E-22 169.2 12.2 101 254-355 338-438 (473)
40 PRK13964 coaD phosphopantethei 99.7 8.9E-17 1.9E-21 139.9 10.8 91 256-353 1-93 (140)
41 PRK00168 coaD phosphopantethei 99.6 7.2E-16 1.6E-20 137.0 10.5 87 256-349 1-88 (159)
42 PRK00777 phosphopantetheine ad 99.6 1.7E-15 3.8E-20 133.9 7.6 93 256-354 1-101 (153)
43 smart00764 Citrate_ly_lig Citr 99.6 1.2E-14 2.5E-19 132.1 12.7 126 71-203 5-165 (182)
44 PRK00168 coaD phosphopantethei 99.6 1.8E-14 4E-19 127.9 11.8 129 66-203 2-138 (159)
45 cd02169 Citrate_lyase_ligase C 99.6 3.2E-14 6.9E-19 138.4 14.2 130 65-203 114-280 (297)
46 PLN02388 phosphopantetheine ad 99.6 2.8E-15 6E-20 135.2 5.7 138 61-205 15-169 (177)
47 TIGR01527 arch_NMN_Atrans nico 99.5 7.3E-14 1.6E-18 125.0 13.5 125 67-203 1-136 (165)
48 PRK01170 phosphopantetheine ad 99.5 1.4E-14 3.1E-19 141.5 8.5 125 67-201 2-140 (322)
49 cd02163 PPAT Phosphopantethein 99.5 1.1E-13 2.3E-18 122.3 10.9 127 68-203 2-136 (153)
50 TIGR00125 cyt_tran_rel cytidyl 99.5 3.8E-14 8.3E-19 106.8 6.9 65 258-324 1-65 (66)
51 cd02163 PPAT Phosphopantethein 99.5 1.5E-13 3.2E-18 121.4 10.6 85 258-349 1-86 (153)
52 PRK01170 phosphopantetheine ad 99.5 3.8E-14 8.3E-19 138.5 7.5 93 258-356 2-99 (322)
53 TIGR00125 cyt_tran_rel cytidyl 99.5 1.5E-13 3.3E-18 103.5 6.8 64 67-130 1-64 (66)
54 PF01467 CTP_transf_2: Cytidyl 99.5 9.3E-14 2E-18 119.7 6.2 62 69-131 1-63 (157)
55 cd02166 NMNAT_Archaea Nicotina 99.4 8.6E-13 1.9E-17 117.8 12.1 126 67-202 1-137 (163)
56 TIGR01510 coaD_prev_kdtB pante 99.4 3.5E-13 7.5E-18 119.3 9.1 85 258-349 1-86 (155)
57 TIGR01510 coaD_prev_kdtB pante 99.4 1.1E-12 2.3E-17 116.1 11.6 119 67-203 1-136 (155)
58 COG1057 NadD Nicotinic acid mo 99.4 1.3E-12 2.8E-17 120.0 11.5 137 64-203 2-174 (197)
59 PRK00071 nadD nicotinic acid m 99.4 2E-12 4.3E-17 119.1 12.4 136 64-203 3-180 (203)
60 cd02164 PPAT_CoAS phosphopante 99.4 4.3E-13 9.3E-18 117.4 7.3 121 67-198 1-142 (143)
61 cd02039 cytidylyltransferase_l 99.4 1.8E-12 3.8E-17 110.9 10.1 97 258-357 1-107 (143)
62 PF01467 CTP_transf_2: Cytidyl 99.4 4.5E-13 9.8E-18 115.4 5.9 91 260-353 1-121 (157)
63 PRK06973 nicotinic acid mononu 99.4 5.6E-12 1.2E-16 119.4 13.2 117 65-185 22-154 (243)
64 cd02165 NMNAT Nicotinamide/nic 99.4 4.3E-12 9.3E-17 115.7 11.1 133 68-203 2-171 (192)
65 TIGR00482 nicotinate (nicotina 99.3 2E-11 4.3E-16 111.6 12.2 131 70-203 2-172 (193)
66 TIGR01527 arch_NMN_Atrans nico 99.3 1.2E-11 2.7E-16 110.6 10.5 87 259-350 2-99 (165)
67 PRK08887 nicotinic acid mononu 99.3 1.5E-11 3.3E-16 110.9 11.1 133 66-203 3-149 (174)
68 cd02064 FAD_synthetase_N FAD s 99.3 1.5E-11 3.2E-16 111.3 9.4 96 259-355 2-112 (180)
69 COG1019 Predicted nucleotidylt 99.3 1.8E-11 3.9E-16 106.5 9.0 127 63-199 3-145 (158)
70 cd02168 NMNAT_Nudix Nicotinami 99.2 1.5E-11 3.2E-16 111.7 7.8 129 68-203 2-145 (181)
71 PRK13964 coaD phosphopantethei 99.2 7E-11 1.5E-15 103.0 10.9 89 66-163 2-92 (140)
72 PRK01153 nicotinamide-nucleoti 99.2 2E-10 4.3E-15 103.7 13.8 127 67-203 2-139 (174)
73 PRK07152 nadD putative nicotin 99.2 7.6E-11 1.6E-15 116.9 11.7 134 66-203 2-168 (342)
74 PRK05379 bifunctional nicotina 99.2 5.2E-11 1.1E-15 118.0 10.2 134 64-204 5-151 (340)
75 cd02166 NMNAT_Archaea Nicotina 99.2 7.3E-11 1.6E-15 105.4 9.3 91 259-354 2-105 (163)
76 cd02167 NMNAT_NadR Nicotinamid 99.1 1.9E-10 4.1E-15 102.2 9.6 126 68-201 2-147 (158)
77 cd02164 PPAT_CoAS phosphopante 99.1 9.1E-11 2E-15 102.7 7.0 92 259-354 2-101 (143)
78 cd02156 nt_trans nucleotidyl t 99.1 5E-11 1.1E-15 98.4 3.2 58 258-319 1-58 (105)
79 PRK05379 bifunctional nicotina 99.1 1.1E-09 2.5E-14 108.5 11.9 99 254-356 4-118 (340)
80 PRK08099 bifunctional DNA-bind 99.0 2.2E-09 4.8E-14 108.7 12.3 130 65-201 52-204 (399)
81 cd02167 NMNAT_NadR Nicotinamid 99.0 8E-10 1.7E-14 98.3 7.9 95 258-356 1-114 (158)
82 cd02168 NMNAT_Nudix Nicotinami 99.0 1.5E-09 3.3E-14 98.5 9.8 94 259-356 2-113 (181)
83 PRK05627 bifunctional riboflav 99.0 1.6E-09 3.5E-14 106.0 10.7 97 258-355 15-127 (305)
84 PRK13670 hypothetical protein; 99.0 1.4E-09 3E-14 109.7 9.7 104 67-180 3-114 (388)
85 COG0669 CoaD Phosphopantethein 99.0 2.3E-09 5.1E-14 94.0 8.7 88 65-161 2-90 (159)
86 TIGR00124 cit_ly_ligase [citra 98.9 2.1E-09 4.6E-14 106.3 8.0 70 255-333 138-208 (332)
87 COG1019 Predicted nucleotidylt 98.9 1.6E-09 3.4E-14 94.5 6.0 105 255-364 4-116 (158)
88 TIGR01526 nadR_NMN_Atrans nico 98.9 1.5E-09 3.2E-14 107.1 6.4 69 256-328 1-71 (325)
89 cd09286 NMNAT_Eukarya Nicotina 98.9 8.1E-09 1.8E-13 96.9 10.7 84 67-152 2-98 (225)
90 PLN02945 nicotinamide-nucleoti 98.9 1.2E-08 2.7E-13 96.3 11.6 97 65-163 22-140 (236)
91 PRK00071 nadD nicotinic acid m 98.9 1.1E-08 2.3E-13 94.3 10.3 93 256-352 4-111 (203)
92 cd02165 NMNAT Nicotinamide/nic 98.9 9.3E-09 2E-13 93.8 8.9 90 258-352 1-105 (192)
93 cd00560 PanC Pantoate-beta-ala 98.8 3.8E-09 8.2E-14 101.9 5.3 112 66-181 25-163 (277)
94 PLN02388 phosphopantetheine ad 98.8 6.5E-09 1.4E-13 94.0 6.2 100 252-355 15-122 (177)
95 PRK08099 bifunctional DNA-bind 98.8 2.7E-08 5.8E-13 100.8 11.2 104 250-353 46-170 (399)
96 PRK01153 nicotinamide-nucleoti 98.8 2.5E-08 5.5E-13 90.1 9.9 90 258-351 2-103 (174)
97 PRK07143 hypothetical protein; 98.8 6.2E-08 1.3E-12 93.7 12.9 100 255-356 14-121 (279)
98 PRK08887 nicotinic acid mononu 98.8 3.2E-08 7E-13 89.3 9.4 67 256-329 2-71 (174)
99 PRK00380 panC pantoate--beta-a 98.8 8.7E-09 1.9E-13 99.7 5.5 109 67-180 26-161 (281)
100 cd02156 nt_trans nucleotidyl t 98.7 1.1E-08 2.4E-13 84.3 5.1 57 68-126 2-58 (105)
101 PRK13793 nicotinamide-nucleoti 98.7 4.1E-08 8.8E-13 90.1 9.2 59 66-126 5-63 (196)
102 PRK13671 hypothetical protein; 98.7 6.4E-08 1.4E-12 94.2 9.7 89 70-163 5-103 (298)
103 PRK13793 nicotinamide-nucleoti 98.7 3.5E-08 7.5E-13 90.5 7.0 60 256-319 4-63 (196)
104 PRK13671 hypothetical protein; 98.7 6.6E-08 1.4E-12 94.1 9.1 87 263-354 7-105 (298)
105 TIGR00124 cit_ly_ligase [citra 98.7 2.6E-07 5.6E-12 91.5 13.1 129 65-202 139-308 (332)
106 TIGR00482 nicotinate (nicotina 98.6 1.6E-07 3.6E-12 85.8 8.5 89 260-352 1-104 (193)
107 cd02169 Citrate_lyase_ligase C 98.6 1.2E-07 2.6E-12 92.6 7.8 93 255-356 113-236 (297)
108 PRK07152 nadD putative nicotin 98.5 3.6E-07 7.9E-12 90.7 9.2 94 256-353 1-109 (342)
109 smart00764 Citrate_ly_lig Citr 98.5 5.5E-07 1.2E-11 82.0 9.5 84 264-356 7-121 (182)
110 KOG3351 Predicted nucleotidylt 98.5 3.4E-07 7.4E-12 85.7 8.0 138 57-201 134-285 (293)
111 COG1056 NadR Nicotinamide mono 98.5 2.4E-07 5.3E-12 83.2 5.9 61 255-319 2-62 (172)
112 TIGR01526 nadR_NMN_Atrans nico 98.4 4.6E-07 1E-11 89.5 7.4 58 66-126 2-60 (325)
113 COG1057 NadD Nicotinic acid mo 98.4 1.6E-06 3.4E-11 79.9 8.7 95 255-353 2-112 (197)
114 PRK06973 nicotinic acid mononu 98.3 3.1E-06 6.8E-11 80.4 10.1 59 255-319 21-81 (243)
115 COG1056 NadR Nicotinamide mono 98.3 3.5E-06 7.6E-11 75.8 9.9 60 64-125 2-61 (172)
116 cd09286 NMNAT_Eukarya Nicotina 98.2 6.3E-06 1.4E-10 77.4 8.7 81 258-341 2-94 (225)
117 PF06574 FAD_syn: FAD syntheta 98.2 7.4E-06 1.6E-10 72.8 8.5 101 255-357 4-121 (157)
118 KOG3351 Predicted nucleotidylt 98.1 3.3E-06 7.1E-11 79.2 5.4 100 250-353 136-243 (293)
119 PLN02945 nicotinamide-nucleoti 98.1 2.2E-05 4.7E-10 74.2 9.5 95 254-351 20-139 (236)
120 TIGR00083 ribF riboflavin kina 97.9 4.9E-05 1.1E-09 74.0 9.7 96 259-355 1-111 (288)
121 PF08218 Citrate_ly_lig: Citra 97.9 8.7E-05 1.9E-09 66.9 10.4 122 73-203 7-165 (182)
122 TIGR00018 panC pantoate--beta- 97.9 2.2E-05 4.9E-10 76.0 6.9 66 66-135 25-93 (282)
123 PLN02660 pantoate--beta-alanin 97.8 4.2E-05 9.2E-10 74.1 7.1 65 66-134 24-91 (284)
124 PRK13670 hypothetical protein; 97.8 8.7E-05 1.9E-09 75.1 9.2 86 263-352 8-104 (388)
125 COG1323 Predicted nucleotidylt 97.4 0.00032 6.9E-09 70.0 7.2 88 71-162 7-103 (358)
126 PF08218 Citrate_ly_lig: Citra 97.4 0.00059 1.3E-08 61.6 7.5 57 265-330 8-65 (182)
127 COG3053 CitC Citrate lyase syn 97.3 0.0038 8.2E-08 60.5 12.8 136 61-203 141-316 (352)
128 PF05636 HIGH_NTase1: HIGH Nuc 97.3 0.0004 8.6E-09 70.4 5.6 89 69-162 5-103 (388)
129 COG0196 RibF FAD synthase [Coe 97.2 0.0015 3.2E-08 64.1 9.1 97 256-355 15-128 (304)
130 COG1323 Predicted nucleotidylt 97.1 0.0018 3.8E-08 64.7 7.8 84 264-352 9-104 (358)
131 TIGR00339 sopT ATP sulphurylas 96.9 0.0081 1.8E-07 60.8 11.2 94 65-163 183-289 (383)
132 PF05636 HIGH_NTase1: HIGH Nuc 96.8 0.0023 5E-08 64.9 6.0 87 264-354 9-106 (388)
133 COG3053 CitC Citrate lyase syn 96.5 0.0081 1.8E-07 58.2 7.6 67 253-328 142-209 (352)
134 TIGR00018 panC pantoate--beta- 96.0 0.016 3.6E-07 56.3 6.7 71 255-329 21-94 (282)
135 PRK00380 panC pantoate--beta-a 96.0 0.024 5.3E-07 55.1 7.9 72 255-328 21-93 (281)
136 PLN02660 pantoate--beta-alanin 95.7 0.024 5.2E-07 55.2 6.4 66 259-328 26-92 (284)
137 cd00560 PanC Pantoate-beta-ala 95.0 0.073 1.6E-06 51.7 7.2 68 255-326 21-91 (277)
138 PF02569 Pantoate_ligase: Pant 94.7 0.078 1.7E-06 51.5 6.6 66 68-134 24-92 (280)
139 COG0414 PanC Panthothenate syn 94.3 0.15 3.3E-06 49.2 7.3 75 57-134 15-92 (285)
140 COG2046 MET3 ATP sulfurylase ( 93.8 0.7 1.5E-05 46.5 11.2 95 65-164 183-288 (397)
141 PRK04149 sat sulfate adenylylt 93.8 1.4 3.1E-05 44.9 13.7 95 64-163 185-290 (391)
142 PRK13477 bifunctional pantoate 93.7 0.15 3.3E-06 53.6 6.7 68 67-135 21-91 (512)
143 TIGR00339 sopT ATP sulphurylas 93.4 0.57 1.2E-05 47.6 10.1 92 257-355 184-292 (383)
144 cd00517 ATPS ATP-sulfurylase. 92.7 1.8 3.9E-05 43.5 12.3 95 65-164 156-263 (353)
145 PF01747 ATP-sulfurylase: ATP- 92.6 1 2.3E-05 42.1 9.9 93 67-164 22-126 (215)
146 PF02569 Pantoate_ligase: Pant 92.3 0.29 6.3E-06 47.6 6.0 70 255-327 21-92 (280)
147 KOG3199 Nicotinamide mononucle 92.3 2.3 5.1E-05 39.6 11.5 60 65-125 8-72 (234)
148 COG0414 PanC Panthothenate syn 92.0 0.26 5.7E-06 47.6 5.2 40 254-294 20-59 (285)
149 PRK05537 bifunctional sulfate 91.0 2.4 5.3E-05 45.2 11.8 97 64-164 185-291 (568)
150 PRK13477 bifunctional pantoate 90.8 0.34 7.4E-06 51.0 5.0 69 257-329 21-92 (512)
151 KOG3042 Panthothenate syntheta 90.4 0.6 1.3E-05 43.7 5.7 76 56-134 16-94 (283)
152 KOG3199 Nicotinamide mononucle 84.9 3.2 7E-05 38.7 6.9 69 258-329 10-84 (234)
153 KOG3042 Panthothenate syntheta 82.4 2.2 4.9E-05 39.9 4.8 40 255-295 23-62 (283)
154 PLN02341 pfkB-type carbohydrat 61.4 2.4 5.3E-05 44.0 -0.3 29 255-283 413-441 (470)
155 PLN02341 pfkB-type carbohydrat 57.4 6.1 0.00013 41.1 1.8 29 64-92 413-441 (470)
156 PRK04149 sat sulfate adenylylt 56.7 58 0.0013 33.3 8.6 92 257-355 187-293 (391)
157 COG2046 MET3 ATP sulfurylase ( 54.6 73 0.0016 32.4 8.7 93 255-354 182-289 (397)
158 cd00517 ATPS ATP-sulfurylase. 52.8 91 0.002 31.5 9.2 92 258-356 158-266 (353)
159 PRK05537 bifunctional sulfate 41.4 87 0.0019 33.6 7.5 93 257-355 187-293 (568)
160 PF01747 ATP-sulfurylase: ATP- 33.8 82 0.0018 29.5 5.2 85 265-356 29-129 (215)
161 cd01715 ETF_alpha The electron 28.6 3.2E+02 0.007 23.8 8.0 74 77-163 13-93 (168)
162 cd01715 ETF_alpha The electron 26.7 4.3E+02 0.0093 23.0 9.9 75 267-356 12-97 (168)
163 PRK02615 thiamine-phosphate py 25.6 2.1E+02 0.0046 28.8 6.8 27 75-101 219-247 (347)
164 PRK00536 speE spermidine synth 25.6 77 0.0017 30.6 3.6 37 62-105 70-106 (262)
165 PHA02450 hypothetical protein 25.4 24 0.00053 25.0 0.1 11 262-272 31-41 (53)
166 COG0826 Collagenase and relate 25.0 5.1E+02 0.011 26.0 9.4 108 82-203 52-159 (347)
167 cd00951 KDGDH 5-dehydro-4-deox 23.0 3.1E+02 0.0067 26.4 7.3 93 78-178 20-119 (289)
168 COG2355 Zn-dependent dipeptida 23.0 1.9E+02 0.004 28.8 5.7 91 75-168 166-267 (313)
169 PF02348 CTP_transf_3: Cytidyl 22.3 1.6E+02 0.0035 26.3 4.9 45 308-352 25-70 (217)
170 PRK06512 thiamine-phosphate py 21.8 2.3E+02 0.005 26.4 5.9 27 74-100 88-116 (221)
171 cd01985 ETF The electron trans 21.7 5E+02 0.011 22.8 7.9 70 82-164 22-102 (181)
172 TIGR00250 RNAse_H_YqgF RNAse H 21.6 3.8E+02 0.0083 22.8 6.8 60 143-202 38-104 (130)
173 COG0421 SpeE Spermidine syntha 21.4 4.9E+02 0.011 25.4 8.2 37 64-106 76-113 (282)
174 COG0159 TrpA Tryptophan syntha 21.1 7.7E+02 0.017 23.9 10.2 30 68-97 97-128 (265)
175 PF13651 EcoRI_methylase: Aden 20.8 1.1E+02 0.0024 30.6 3.6 45 114-162 124-168 (336)
176 PRK03170 dihydrodipicolinate s 20.1 4.9E+02 0.011 24.8 8.1 93 79-178 22-121 (292)
No 1
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=100.00 E-value=3e-76 Score=587.96 Aligned_cols=341 Identities=73% Similarity=1.133 Sum_probs=305.4
Q ss_pred cccccccccccchhhhHHHHHhhhhccccccCcccccCcccchHHhhhcccCCCCCeEEEEecccCcCCHHHHHHHHHHH
Q 017744 10 WIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAK 89 (366)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk 89 (366)
+.|.+.++++|++|++|+++|+||+++++++. ..|++|+..-..+++++.++.|||++||||++|.||.++|+||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~rV~~~G~FDllH~GH~~~L~qAk 77 (418)
T PLN02406 2 SISSAKYVASCLIGGLMLGASVLGLSLAGFGS----SLPYAWPDLGIFKKKKKKKPVRVYMDGCFDMMHYGHANALRQAR 77 (418)
T ss_pred CccccceeeehhhHHHHHHHHHHHHHhccccc----cccccchhhhhhccccCCCceEEEEcCeeCCCCHHHHHHHHHHH
Confidence 45678889999999999999999999998872 25666766222244555677899999999999999999999999
Q ss_pred HhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCccccEEEecCCccccHHHHHHHhhccCccEEEEcCCCCCCCCC
Q 017744 90 ALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDG 169 (366)
Q Consensus 90 ~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vv~~~p~~~~~eFl~~ll~~l~~d~VV~G~D~~fg~~g 169 (366)
++||+|+|||++|+++.++|++|+++++||++++++|+|||+|++++||.++.+|+.+++++++||++|||+||+...++
T Consensus 78 ~lGd~LIVGV~SDe~i~~~Kg~PV~~~eER~~~v~alk~VD~Vv~~apy~~~~d~~~~li~~~~~D~vVhGdD~~~~~~g 157 (418)
T PLN02406 78 ALGDELVVGVVSDEEIIANKGPPVTPMHERMIMVSGVKWVDEVIPDAPYAITEEFMNKLFNEYNIDYIIHGDDPCLLPDG 157 (418)
T ss_pred HhCCEEEEEEecChhhhccCCCCcCCHHHHHHHHHhcCCCceEEeCCccccchHHHHHHHHHhCCCEEEECCCccccCCc
Confidence 99999999999999998889999999999999999999999999999999999999888899999999999999988899
Q ss_pred CchHHHHHhCCeEEEeccCCCCCHHHHHHHHHhccccccccccccCCCCCCCchh-------hhccCcccccccccccce
Q 017744 170 TDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLR-------AIQSKDAHLSQFLPTSRR 242 (366)
Q Consensus 170 ~~~~~~lk~~g~~~~v~r~~~vSST~Ir~rI~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 242 (366)
.+.|...+..|++++++|++++|||+|++||+.++++++....+...++.++|+. .+.+..+.+++|++|+++
T Consensus 158 ~d~y~~~k~~Gr~~~i~rt~GvSTTdIv~Ril~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 237 (418)
T PLN02406 158 TDAYALAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHSQFEDGGSGSGTRVSHFLPTSRR 237 (418)
T ss_pred hHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHhhhccccccccchhhhhhhhccccccccccCCCCCCCcccccccHHH
Confidence 9999999999999999999999999999999999999875433333333333331 122344677899999999
Q ss_pred eecccCCCCCCCCCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCCC
Q 017744 243 IVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYV 322 (366)
Q Consensus 243 i~~~~~~~~~~~~~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~V 322 (366)
|.||++|+.|.+++++||++|+||+||.||+++|++|+++||+|||||++|+.++++||+++|+|+++||++++++|+||
T Consensus 238 i~qf~~g~~p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lGd~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~ack~V 317 (418)
T PLN02406 238 IVQFSNGKGPGPDARIVYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLACRYV 317 (418)
T ss_pred HHHHhccCCCCCCCeEEEECCeeccCCHHHHHHHHHHHHhCCEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred CcEEEcCCCCchHHHHHHcCCcEEEECCCCCC
Q 017744 323 DEVIIGAPWEVTKDMITTFNICLVVHGTVSET 354 (366)
Q Consensus 323 d~Vvi~~~~~~~~d~i~~~~~~~vv~G~~~~~ 354 (366)
|+|++++|+..+.+++++++||++|||++|+.
T Consensus 318 D~VVi~ap~~~~~~~i~~~~~d~vvhG~~~~~ 349 (418)
T PLN02406 318 DEVIIGAPWEVSKDMITTFNISLVVHGTVAEN 349 (418)
T ss_pred cEEEeCCCCCCCHHHHHHhCCCEEEECCcCCC
Confidence 99999999999999999999999999998854
No 2
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=100.00 E-value=7.1e-76 Score=554.31 Aligned_cols=283 Identities=56% Similarity=0.943 Sum_probs=264.9
Q ss_pred CCCeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCccccEEEecCCccccH
Q 017744 63 KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITE 142 (366)
Q Consensus 63 ~~~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vv~~~p~~~~~ 142 (366)
.++.|||++||||++|+||.++|+|||++|+.|+||||+|++|..+||+|+|+.|||++++++|+|||+||.++||.++.
T Consensus 6 ~~~~rVw~DGCfDm~HyGHanaLrQAkalGdkLivGVHsDeeI~~nKGpPV~t~eERy~~v~~ikWVDEVV~~APyvtt~ 85 (358)
T KOG2803|consen 6 NRPVRVWADGCFDMVHYGHANALRQAKALGDKLIVGVHSDEEITLNKGPPVFTDEERYEMVKAIKWVDEVVEGAPYVTTL 85 (358)
T ss_pred CCceeEEeccchhhhhhhhhHHHHHHHHhCCeEEEEecchHHHHhcCCCCcccHHHHHHHHhhcchhhhhhcCCCeeccH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCccEEEEcCCCCCCCCCCchHHHHHhCCeEEEeccCCCCCHHHHHHHHHhccccccccccccCCCCCCCc
Q 017744 143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDP 222 (366)
Q Consensus 143 eFl~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~g~~~~v~r~~~vSST~Ir~rI~~~~~~~~~~~~~~~~~~~~~~ 222 (366)
++++ +|+||+||||+|.+..++|.|+|.+.|++|++++++||+|||||+|+.||+..++.+. ++....+..+..+
T Consensus 86 ~~md----~y~cd~vvHGdDit~~a~G~D~Y~~vK~agrykevKRT~GVSTTelvgRmll~~~~~~-~~~~~~~~~e~~~ 160 (358)
T KOG2803|consen 86 EWMD----KYGCDYVVHGDDITLDADGLDCYRLVKAAGRYKEVKRTEGVSTTELVGRMLLKKRNHH-SDEVSSSQRELSF 160 (358)
T ss_pred HHHH----HhCCeEEEeCCcceecCCCccHHHHHHHhcchheeeeccCcchhhhhhHhhhhccCCC-ccccchhhhhhhh
Confidence 9984 6999999999999999999999999999999999999999999999999999999888 3333332233333
Q ss_pred h----hhhccCcccccccccccceeecccCCCCCCCCCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhc
Q 017744 223 L----RAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSE 298 (366)
Q Consensus 223 ~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~ 298 (366)
+ +...+++|++++|+|++++|+||++|+.|.|..++||++|.||+||.||+++|++|+.+||+|||||++|+.+|+
T Consensus 161 ~~g~~~~~~sp~t~~s~F~~tt~~i~~~~~G~~p~p~~kvVYvdGaFDLFH~GHl~~Le~ak~lgdyLIvGI~~D~~vne 240 (358)
T KOG2803|consen 161 SSGTDDDGLSPWTRVSVFLPTTQKIIQFSNGREPKPTDKVVYVDGAFDLFHAGHLDFLEKAKRLGDYLIVGIHTDQTVNE 240 (358)
T ss_pred ccccCCcccCCccceeeeeecCccceEeecCCCCCCCCcEEEEcCchhhhccchHHHHHHHHhccCceEEEeecCcchhh
Confidence 2 334578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCHHHHHHHHHhcCCCCcEEEcCCCCchHHHHHHcCCcEEEECC
Q 017744 299 HRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGT 350 (366)
Q Consensus 299 ~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~~~~~~~d~i~~~~~~~vv~G~ 350 (366)
+||.++|+||+.||++.|++|||||+|++++|+..+.++++.++++.|++|.
T Consensus 241 ykgs~~PiMnl~ER~LsvlackyVdeVvvGaP~~v~s~~i~~~~~~~v~~g~ 292 (358)
T KOG2803|consen 241 YKGSNYPIMNLHERVLSVLACKYVDEVVVGAPYEVTSEFIKLFNIDKVAHGT 292 (358)
T ss_pred hccCCCccchHHHHHHHHhhhcccceEEEcCchhccHHHHHhcCceEEEEec
Confidence 9999899999999999999999999999999999999999999999999998
No 3
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=100.00 E-value=3e-66 Score=510.97 Aligned_cols=282 Identities=50% Similarity=0.869 Sum_probs=256.8
Q ss_pred CCCCeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCccccEEEecCCcccc
Q 017744 62 KKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAIT 141 (366)
Q Consensus 62 ~~~~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vv~~~p~~~~ 141 (366)
+.++++||++||||++|.||+++|+||+++|+.|+||+++|+.+.++|++|+++.+||++++++|+|||+|+++.||+.+
T Consensus 8 ~~~~~~v~~~G~FD~vH~GH~~~L~qAk~~g~~Livgv~~d~~i~~~K~~pi~~~eeR~~~l~~~~~VD~Vv~~~p~~~~ 87 (353)
T PTZ00308 8 KPGTIRVWVDGCFDMLHFGHANALRQARALGDELFVGCHSDEEIMRNKGPPVMHQEERYEALRACKWVDEVVEGYPYTTR 87 (353)
T ss_pred CCCcEEEEEEeecccCCHHHHHHHHHHHHhCCEEEEEeCCHHHHhhcCCCCCCCHHHHHHHHHhcCCccEEEECCCCCch
Confidence 45568999999999999999999999999999999999999999888888999999999999999999999998899877
Q ss_pred HHHHHHHhhccCccEEEEcCCCCCCCCCCchHHHHHhCCeEEEeccCCCCCHHHHHHHHHhccccccccccccCCCCCCC
Q 017744 142 EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRD 221 (366)
Q Consensus 142 ~eFl~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~g~~~~v~r~~~vSST~Ir~rI~~~~~~~~~~~~~~~~~~~~~ 221 (366)
.+|+ ++++||+||||+||+||.+|.++|+.+++.|+++.++|++++|||+|++||+.++++++.... ....+
T Consensus 88 ~~fI----~~l~~d~vv~GdD~~~g~~g~~~~~~lk~~G~~~~v~rt~g~STt~ii~ril~~~~~~~~~~~-~~~~~--- 159 (353)
T PTZ00308 88 LEDL----ERLECDFVVHGDDISVDLNGRNSYQEIIDAGKFKVVKRTEGISTTDLVGRMLLCTKSHLLKSV-DEVQL--- 159 (353)
T ss_pred HHHH----HHhCCCEEEECCCCCCCCCccchHHHHHhCCeEEEEecCCCCCHHHHHHHHHHhhhccccccc-ccccc---
Confidence 7777 468999999999999999999999999999999999999999999999999999998764211 11111
Q ss_pred chhhhccCcccccccccccceeecccCCCCCCCCCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccC
Q 017744 222 PLRAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRG 301 (366)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg 301 (366)
+ .....++..++|++++++|.||+.+..|.++.++||++|+|||||.||+++|++|+++||+|||||++|+.++++||
T Consensus 160 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kiv~~~G~FDl~H~GHi~~L~~A~~lgd~LIVgV~sD~~v~~~Kg 237 (353)
T PTZ00308 160 -E-SSLFPYTPTSHCLTTSRKIVQFSNNRSPKPGDRIVYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHEDQVVNEQKG 237 (353)
T ss_pred -c-cccccCCCcceeecchhheeeccccCCCCCCCeEEEECCccCCCCHHHHHHHHHHHHhCCEEEEEEcchHHhHhhcC
Confidence 1 12234556788999999999999998888888999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCcEEEcCCCCchHHHHHHcCCcEEEECCCCC
Q 017744 302 SYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSE 353 (366)
Q Consensus 302 ~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~~~~~~~d~i~~~~~~~vv~G~~~~ 353 (366)
+++|+|+++||++++++|++||+|++.+|++++.+++++++||++|||+||.
T Consensus 238 ~~~Pi~~~~eR~~~v~a~~~Vd~Vvi~~~~~~~~~~i~~~~~d~vv~G~d~~ 289 (353)
T PTZ00308 238 SNYPIMNLNERVLGVLSCRYVDEVVIGAPFDVTKEVIDSLHINVVVGGKFSD 289 (353)
T ss_pred CCCCCCCHHHHHHHHHhhCCCCeEEEcCCCCChHHHHHHhCCCEEEECCCCc
Confidence 7789999999999999999999999999999999999999999999999986
No 4
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=99.97 E-value=4.8e-31 Score=232.18 Aligned_cols=138 Identities=61% Similarity=1.009 Sum_probs=128.0
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHhC--CeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCccccEEEecCCccccH
Q 017744 65 RVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITE 142 (366)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qAk~lg--d~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vv~~~p~~~~~ 142 (366)
++|||+.|+||++|.||.++|++|+++| |.|+|||++|+.+..+|++|+++.+||++++++|+|||+|+++.|+..+.
T Consensus 2 ~~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~pi~~~~eR~~~l~~~~~Vd~Vi~~~~~~~~~ 81 (150)
T cd02174 2 PVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYEAVRHCKWVDEVVEGAPYVTTP 81 (150)
T ss_pred CeEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCCCcCCHHHHHHHHHhcCCCCeEEECCCCCChH
Confidence 5689999999999999999999999999 99999999999988888889999999999999999999999999988888
Q ss_pred HHHHHHhhccCccEEEEcCCCCCCCCCCchHHHHHhCCeEEEeccCCCCCHHHHHHHHHhcccc
Q 017744 143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMED 206 (366)
Q Consensus 143 eFl~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~g~~~~v~r~~~vSST~Ir~rI~~~~~~ 206 (366)
+|++ +++||++++|+||..+..+.+.|+.+++.|++..+++++++|||.|++||+++.+.
T Consensus 82 ~~i~----~~~~d~vv~G~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Stt~ii~rI~~~~~~ 141 (150)
T cd02174 82 EFLD----KYKCDYVAHGDDIYLDADGEDCYQEVKDAGRFKEVKRTEGVSTTDLIGRILLDYRD 141 (150)
T ss_pred HHHH----HhCCCEEEECCCCCCCCCchhHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhHHH
Confidence 8874 68999999999999877777889999999999999999999999999999977543
No 5
>PLN02413 choline-phosphate cytidylyltransferase
Probab=99.97 E-value=4.3e-30 Score=243.27 Aligned_cols=141 Identities=43% Similarity=0.771 Sum_probs=127.7
Q ss_pred CCCCCeEEEEecccCcCCHHHHHHHHHHHHhC--CeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCccccEEEecCCc
Q 017744 61 GKKKRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPY 138 (366)
Q Consensus 61 ~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~lg--d~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vv~~~p~ 138 (366)
+..++++||++||||++|.||+++|++|+++| +.|+|||++|+.+.+.|++|+++++||+++|++|+|||+|++++||
T Consensus 23 ~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGrPIm~~~ER~e~V~acKyVDeVV~~aP~ 102 (294)
T PLN02413 23 PSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTEDERYESLRHCKWVDEVIPDAPW 102 (294)
T ss_pred CCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCCCCCCHHHHHHHHHhcccccEEeeCCCc
Confidence 45667899999999999999999999999996 7999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHhhccCccEEEEcCCCCCCC--CCCchHHHHHhCCeEEEeccCCCCCHHHHHHHHHhccc
Q 017744 139 AITEQFMNRLFNEHKIDYIIHGDDPCLLP--DGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSME 205 (366)
Q Consensus 139 ~~~~eFl~~ll~~l~~d~VV~G~D~~fg~--~g~~~~~~lk~~g~~~~v~r~~~vSST~Ir~rI~~~~~ 205 (366)
..+++|++ +++||+||||++..... .+.+.|+.+++.|++..+++++++|||+|++||++.+.
T Consensus 103 ~~t~efI~----~~kpDiVvhGd~~~~d~~~~g~D~Y~~vK~~G~f~~i~Rt~gvSTTdII~RIlk~y~ 167 (294)
T PLN02413 103 VITQEFLD----KHRIDYVAHDALPYADASGAGKDVYEFVKKIGKFKETKRTDGISTSDIIMRIVKDYN 167 (294)
T ss_pred cccHHHHH----HhCCCEEEECCCCCccccccCchhHHHHHHCCeEEEecCCCCcCHHHHHHHHHHHHH
Confidence 99999885 58999999998554322 45678999999999999999999999999999997644
No 6
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=99.97 E-value=2.6e-30 Score=222.53 Aligned_cols=131 Identities=44% Similarity=0.724 Sum_probs=116.8
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhh-cCCCCCCcHHHHHHHHhcCccccEEEecCCccccHHH
Q 017744 66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIA-NKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF 144 (366)
Q Consensus 66 ~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~-~K~~pi~t~eER~~ll~~~~~VD~vv~~~p~~~~~eF 144 (366)
++||+.||||++|+||.++|+||+++||+|+|.+.+|+.+.. +|++|+++++||++++++|+|||+|++++||+++.++
T Consensus 2 ~rV~~~GtFDilH~GHi~~L~~Ak~lGd~liVv~a~de~~~~~~k~~pi~~~~qR~evl~s~ryVD~vi~~~p~~~~~~~ 81 (140)
T COG0615 2 KRVWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKRKPIMPEEQRAEVLESLRYVDEVILGAPWDIKFED 81 (140)
T ss_pred cEEEEeeEEEEechhHHHHHHHHHHhCCeEEEEEeccHHHHHhcCCCCCCCHHHHHHHHHcCcchheeeeCCccccChHH
Confidence 469999999999999999999999999999998888888766 5669999999999999999999999999999998887
Q ss_pred HHHHhhccCccEEEEcCCCCCCCCCCchHHHHHhCCeEEEeccCCC------CCHHHHHHHHHh
Q 017744 145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEG------VSSTDIVGRILS 202 (366)
Q Consensus 145 l~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~g~~~~v~r~~~------vSST~Ir~rI~~ 202 (366)
++ +++||+|++|+||+ +..+...|+..+ .|.+.+++|+++ +||+.|.+++..
T Consensus 82 i~----~~k~Div~lG~D~~-~d~~~l~~~~~k-~G~~~~v~R~~g~~~~~~~st~~i~~~i~~ 139 (140)
T COG0615 82 IE----EYKPDIVVLGDDQK-FDEDDLKYELVK-RGLFVEVKRTEGVSTCELISTSDIIKRILE 139 (140)
T ss_pred HH----HhCCCEEEECCCCc-CChHHHHHHHHH-cCCeeEEEeccCcccCcccchHHHHHHHhc
Confidence 74 68999999999999 555566676666 999999999887 899999998863
No 7
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=99.96 E-value=5.7e-29 Score=248.85 Aligned_cols=146 Identities=33% Similarity=0.627 Sum_probs=133.9
Q ss_pred HhhhcccCCCCCeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCC--CCCCcHHHHHHHHhcCccccE
Q 017744 54 CFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDE 131 (366)
Q Consensus 54 ~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~--~pi~t~eER~~ll~~~~~VD~ 131 (366)
||+.++.++++.++||++||||++|.||.++|++|+++||.|+|||++|+.+..+|+ +|+++++||.+++++|+|||+
T Consensus 240 qf~~g~~p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lGd~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~ack~VD~ 319 (418)
T PLN02406 240 QFSNGKGPGPDARIVYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLACRYVDE 319 (418)
T ss_pred HHhccCCCCCCCeEEEECCeeccCCHHHHHHHHHHHHhCCEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhccCcccE
Confidence 787777677788899999999999999999999999999999999999999998887 899999999999999999999
Q ss_pred EEecCCccccHHHHHHHhhccCccEEEEcCCCC---CCCCCCchHHHHHhCCeEEEeccCCCCCHHHHHHHHHhc
Q 017744 132 VIANAPYAITEQFMNRLFNEHKIDYIIHGDDPC---LLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS 203 (366)
Q Consensus 132 vv~~~p~~~~~eFl~~ll~~l~~d~VV~G~D~~---fg~~g~~~~~~lk~~g~~~~v~r~~~vSST~Ir~rI~~~ 203 (366)
|++++||+.+++|++ +++||++|||+||. +...+.|.|...++.|+++.+++++++|||+|++||+.+
T Consensus 320 VVi~ap~~~~~~~i~----~~~~d~vvhG~~~~~~~~~~~~~D~Y~v~k~~G~~~~i~~~~~iSTt~II~RI~~~ 390 (418)
T PLN02406 320 VIIGAPWEVSKDMIT----TFNISLVVHGTVAENNDFLKGEDDPYAVPKSMGIFQVLESPLDITTSTIIRRIVAN 390 (418)
T ss_pred EEeCCCCCCCHHHHH----HhCCCEEEECCcCCCccccCCCCcchHHHhcCceEEEeCCCCCCcHHHHHHHHHHh
Confidence 999999999999875 57999999999873 233457889999999999999999999999999999965
No 8
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=99.96 E-value=1.4e-29 Score=238.97 Aligned_cols=153 Identities=41% Similarity=0.644 Sum_probs=137.7
Q ss_pred CCCCeEEEEecccCcCCHHHHHHHHHHHHhC--CeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCccccEEEecCCcc
Q 017744 62 KKKRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYA 139 (366)
Q Consensus 62 ~~~~~~V~~~G~FD~lH~GH~~lL~qAk~lg--d~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vv~~~p~~ 139 (366)
..+++|||++|.||++|.||++.|+||+++. -+|+|||.+|+...+.||..+|+.+||++.|++|+|||+|+.++||.
T Consensus 60 ~~RPVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e~ERyE~lrHCryVDEVi~~APW~ 139 (348)
T KOG2804|consen 60 TDRPVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNENERYEALRHCRYVDEVIPNAPWT 139 (348)
T ss_pred CCCceEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCceecChHHHHHHhhhhhhhhhhccCCCcc
Confidence 5788999999999999999999999999998 57999999999989999999999999999999999999999999999
Q ss_pred ccHHHHHHHhhccCccEEEEcCCCCCCCCCCchHHHHHhCCeEEEeccCCCCCHHHHHHHHHhccccccccccccCCCCC
Q 017744 140 ITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLP 219 (366)
Q Consensus 140 ~~~eFl~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~g~~~~v~r~~~vSST~Ir~rI~~~~~~~~~~~~~~~~~~~ 219 (366)
++.+||+ ++++|+|+|.+-+..+.+..|.|+.+|+.|++.+.+||+||||++|+.||...+. ...++.|+
T Consensus 140 lt~EFL~----~HKIDfVAHDdIPY~s~gsdDiY~~vK~~G~F~~T~RTeGvSTSDiI~rIVrDYD------~YvrRNL~ 209 (348)
T KOG2804|consen 140 LTPEFLE----KHKIDFVAHDDIPYVSAGSDDIYKPVKEAGMFLPTQRTEGVSTSDIITRIVRDYD------VYVRRNLA 209 (348)
T ss_pred ccHHHHH----hcccceeeccCccccCCCchhHHHHHHHhcccccccccCCccHHHHHHHHHHhHH------HHHHhhhc
Confidence 9999985 5899999999998887777778999999999999999999999999999986642 23455566
Q ss_pred CCchh
Q 017744 220 RDPLR 224 (366)
Q Consensus 220 ~~~~~ 224 (366)
|.+++
T Consensus 210 RGys~ 214 (348)
T KOG2804|consen 210 RGYSA 214 (348)
T ss_pred ccCCH
Confidence 66654
No 9
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=99.96 E-value=1.9e-28 Score=216.17 Aligned_cols=136 Identities=40% Similarity=0.714 Sum_probs=123.3
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCC--CCCCcHHHHHHHHhcCccccEEEecCCccccH
Q 017744 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDEVIANAPYAITE 142 (366)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~--~pi~t~eER~~ll~~~~~VD~vv~~~p~~~~~ 142 (366)
.++||+.|+||++|.||.++|++|+++||.|+|||++|+.+.+.|+ +|+++++||++++++|+|||+|++..|+.++.
T Consensus 2 ~~iv~~~G~FD~~H~GHi~~L~~A~~lgd~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~~Vd~V~v~~~~~~~~ 81 (152)
T cd02173 2 DKVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDEVVIGAPYVITK 81 (152)
T ss_pred CeEEEEcCcccCCCHHHHHHHHHHHHcCCEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCcchH
Confidence 3589999999999999999999999999999999999999888776 69999999999999999999999988887777
Q ss_pred HHHHHHhhccCccEEEEcCCCCCC--CCCCchHHHHHhCCeEEEeccCCCCCHHHHHHHHHhcc
Q 017744 143 QFMNRLFNEHKIDYIIHGDDPCLL--PDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSM 204 (366)
Q Consensus 143 eFl~~ll~~l~~d~VV~G~D~~fg--~~g~~~~~~lk~~g~~~~v~r~~~vSST~Ir~rI~~~~ 204 (366)
+|+ ++++||++++|.||... ..+.+.|..+++.|.+..+++++++|||+|++||++..
T Consensus 82 ~~~----~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~~~G~~~~v~~~~~~Sts~Ii~rI~~~~ 141 (152)
T cd02173 82 ELI----EHFKIDVVVHGKTEETPDSLDGEDPYAVPKEMGIFKEIDSGSDLTTRDIVNRIIKNR 141 (152)
T ss_pred HHH----HHhCCCEEEECCCCccccccCchHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHhH
Confidence 776 46899999999999754 34567799999999999999999999999999998653
No 10
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.95 E-value=1.9e-27 Score=205.22 Aligned_cols=133 Identities=44% Similarity=0.660 Sum_probs=118.9
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCccccEEEecCCccccHHH
Q 017744 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF 144 (366)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vv~~~p~~~~~eF 144 (366)
+++|+++|+||++|.||+.+|++|+++++.++|++++|+.+.+.|++|+++.+||++++++|+|||.++...|+++
T Consensus 1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~l~v~v~~~~~~~~~~~~~~~~~~eR~~~l~~~~~vd~v~~~~~~~~---- 76 (136)
T cd02170 1 MKRVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKRRPILPEEQRAEVVEALKYVDEVILGHPWSY---- 76 (136)
T ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECCcHHHHhcCCCCCCCHHHHHHHHHcCCCcCEEEECCCCCH----
Confidence 3589999999999999999999999999999999999987766666799999999999999999999998777654
Q ss_pred HHHHhhccCccEEEEcCCCCCCCCCCchHHHHHhCCeEEEec--cCCCCCHHHHHHHHHh
Q 017744 145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK--RTEGVSSTDIVGRILS 202 (366)
Q Consensus 145 l~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~g~~~~v~--r~~~vSST~Ir~rI~~ 202 (366)
++.+ .++++|++|+|+||+||.++++.++.+++.|....+. .+.++|||+||++|+.
T Consensus 77 ~~~l-~~~~~~~vv~G~d~~fg~~~~~~~~~l~~~g~~~~~~~~~~~~vSSt~Ir~~i~~ 135 (136)
T cd02170 77 FKPL-EELKPDVIVLGDDQKNGVDEEEVYEELKKRGKVIEVPRKKTEGISSSDIIKRILE 135 (136)
T ss_pred hHHH-HHHCCCEEEECCCCCCCCcchhHHHHHHHCCeEEEECCCCCCCCcHHHHHHHHHh
Confidence 4332 4578999999999999999999999999999988888 7889999999999963
No 11
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=99.95 E-value=2.4e-27 Score=207.41 Aligned_cols=135 Identities=24% Similarity=0.370 Sum_probs=117.4
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCccccEEEecCCccccHHH
Q 017744 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF 144 (366)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vv~~~p~~~~~eF 144 (366)
.++|+++|+||++|.||+++|++|+++|+.++|++++|+.+.+.+.+|+++.+||.+++++++|||.++.. |+...++|
T Consensus 4 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~vv~~~~d~~~~~~~~~~i~~~~eR~~~l~~lg~VD~vi~~-~~~~~~~f 82 (144)
T cd02172 4 KTVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKGPGRPIFPEDLRAEVLAALGFVDYVVLF-DNPTALEI 82 (144)
T ss_pred CEEEEEecccCCCCHHHHHHHHHHHHhCCeEEEEEeChHHhccCCCCCCCCHHHHHHHHHccCCccEEEEC-CCCCHHHH
Confidence 45799999999999999999999999999999999999877665558999999999999999999999983 55445677
Q ss_pred HHHHhhccCccEEEEcCCCCCCCCC-----CchHHHHHhCCeEEEeccCCCCCHHHHHHHHHhcc
Q 017744 145 MNRLFNEHKIDYIIHGDDPCLLPDG-----TDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSM 204 (366)
Q Consensus 145 l~~ll~~l~~d~VV~G~D~~fg~~g-----~~~~~~lk~~g~~~~v~r~~~vSST~Ir~rI~~~~ 204 (366)
++ ++++++||+|+||+||.++ .++++.+++.|....+.+++++|||+|++||++.+
T Consensus 83 i~----~l~~~~vv~G~d~~fg~~~~~~~~~g~~~~l~~~g~~~~~~~~~~~sts~li~~i~~~~ 143 (144)
T cd02172 83 ID----ALQPNIYVKGGDYENPENDVTGKIAPEAEAVKAYGGKIVFTGEIVFSSSALINRIFDEL 143 (144)
T ss_pred HH----HhCCCEEEECCCcccCccccccchhhhHHHHHHhCCEEEEecCCCcchHHHHHHHHhhc
Confidence 75 5899999999999999876 77899999887655444999999999999998653
No 12
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=99.95 E-value=1.6e-27 Score=235.78 Aligned_cols=146 Identities=32% Similarity=0.612 Sum_probs=131.8
Q ss_pred HhhhcccCCCCCeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCC--CCCCcHHHHHHHHhcCccccE
Q 017744 54 CFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDE 131 (366)
Q Consensus 54 ~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~--~pi~t~eER~~ll~~~~~VD~ 131 (366)
+|+.+..++++.++||+.||||++|.||+++|++|+++||+|+|||++|+.++..|+ .|+++.+||++++++|+|||+
T Consensus 181 ~~~~~~~~~~~~kiv~~~G~FDl~H~GHi~~L~~A~~lgd~LIVgV~sD~~v~~~Kg~~~Pi~~~~eR~~~v~a~~~Vd~ 260 (353)
T PTZ00308 181 QFSNNRSPKPGDRIVYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVLSCRYVDE 260 (353)
T ss_pred eccccCCCCCCCeEEEECCccCCCCHHHHHHHHHHHHhCCEEEEEEcchHHhHhhcCCCCCCCCHHHHHHHHHhhCCCCe
Confidence 666665555556899999999999999999999999999999999999999988887 699999999999999999999
Q ss_pred EEecCCccccHHHHHHHhhccCccEEEEcCCCCC--CCCCCchHHHHHhCCeEEEeccCCCCCHHHHHHHHHhc
Q 017744 132 VIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCL--LPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS 203 (366)
Q Consensus 132 vv~~~p~~~~~eFl~~ll~~l~~d~VV~G~D~~f--g~~g~~~~~~lk~~g~~~~v~r~~~vSST~Ir~rI~~~ 203 (366)
|++.+|+..+.+|++ +++||++|+|+||.. ..++.+.|...+..|++..+++++++|||+|++||+..
T Consensus 261 Vvi~~~~~~~~~~i~----~~~~d~vv~G~d~~~~~~~~~~d~y~~~k~~G~~~~i~~~~~~sTt~ii~RI~~~ 330 (353)
T PTZ00308 261 VVIGAPFDVTKEVID----SLHINVVVGGKFSDLVNEEGGSDPYEVPKAMGIFKEVDSGCDLTTDSIVDRVVKN 330 (353)
T ss_pred EEEcCCCCChHHHHH----HhCCCEEEECCCCccccCCCcccchHHHhcCceEEEeCCCCCccHHHHHHHHHHh
Confidence 999889988888874 689999999999975 55567889999999999999999999999999999855
No 13
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=99.95 E-value=1.1e-27 Score=211.36 Aligned_cols=100 Identities=64% Similarity=1.086 Sum_probs=95.8
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCCCCcEEEcCCCCchH
Q 017744 256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTK 335 (366)
Q Consensus 256 ~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~~~~~~~ 335 (366)
+++||++|+||+||.||+++|++|+++||+|||||++|+.+++.||+++|+|+++||++++++|++||+|++++|++++.
T Consensus 2 ~~iv~~~G~FD~~H~GHi~~L~~A~~lgd~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~~Vd~V~v~~~~~~~~ 81 (152)
T cd02173 2 DKVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDEVVIGAPYVITK 81 (152)
T ss_pred CeEEEEcCcccCCCHHHHHHHHHHHHcCCEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCcchH
Confidence 58999999999999999999999999999999999999999999987679999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEECCCCCCC
Q 017744 336 DMITTFNICLVVHGTVSETN 355 (366)
Q Consensus 336 d~i~~~~~~~vv~G~~~~~~ 355 (366)
+++++++||++++|.+|...
T Consensus 82 ~~~~~~~~d~vv~G~d~~~~ 101 (152)
T cd02173 82 ELIEHFKIDVVVHGKTEETP 101 (152)
T ss_pred HHHHHhCCCEEEECCCCccc
Confidence 99999999999999999754
No 14
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=99.94 E-value=8.1e-27 Score=205.37 Aligned_cols=98 Identities=40% Similarity=0.782 Sum_probs=93.5
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCCCCcEEEcCCCCc
Q 017744 256 ARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEV 333 (366)
Q Consensus 256 ~~~v~~~GsFD~~h~GHi~~L~~A~~~g--d~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~~~~~ 333 (366)
.++||++|+||+||.||+++|++|+++| |+|||||++|+.++++||+ |+|+++||++++++|++||+|++++|+.+
T Consensus 2 ~~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~--pi~~~~eR~~~l~~~~~Vd~Vi~~~~~~~ 79 (150)
T cd02174 2 PVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGP--PVMTEEERYEAVRHCKWVDEVVEGAPYVT 79 (150)
T ss_pred CeEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCC--CcCCHHHHHHHHHhcCCCCeEEECCCCCC
Confidence 3679999999999999999999999999 9999999999999999985 99999999999999999999999999999
Q ss_pred hHHHHHHcCCcEEEECCCCCCC
Q 017744 334 TKDMITTFNICLVVHGTVSETN 355 (366)
Q Consensus 334 ~~d~i~~~~~~~vv~G~~~~~~ 355 (366)
+.+++++++||++++|+||..+
T Consensus 80 ~~~~i~~~~~d~vv~G~d~~~~ 101 (150)
T cd02174 80 TPEFLDKYKCDYVAHGDDIYLD 101 (150)
T ss_pred hHHHHHHhCCCEEEECCCCCCC
Confidence 9999999999999999999754
No 15
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.94 E-value=8.2e-26 Score=197.64 Aligned_cols=130 Identities=35% Similarity=0.538 Sum_probs=109.2
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCC--CCCCcHHHHHHHHhcCccccEEEecCCccccH
Q 017744 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDEVIANAPYAITE 142 (366)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~--~pi~t~eER~~ll~~~~~VD~vv~~~p~~~~~ 142 (366)
.++|+++|+||++|.||+++|++|+++|+.++|++++|+.....++ +|+++.+||.+++++|+|||++++..+.+ .+
T Consensus 11 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f~~~~-~~ 89 (144)
T TIGR02199 11 KKIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIFDEDT-PE 89 (144)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHhCCccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEECCCCC-HH
Confidence 4579999999999999999999999999999999999998654444 68999999999999999999999843322 35
Q ss_pred HHHHHHhhccCccEEEEcCCCCCCCCCCchHHHHHhC-CeEEEeccCCCCCHHHHHHHHH
Q 017744 143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKV-GRYKQIKRTEGVSSTDIVGRIL 201 (366)
Q Consensus 143 eFl~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~-g~~~~v~r~~~vSST~Ir~rI~ 201 (366)
+|++ +++++++|+|+||+|.. ...++.+++. +++..+++++++|||+||+||+
T Consensus 90 ~fi~----~l~~~~vv~G~d~~~~~--~~~~~~~~~~g~~v~~~~~~~~iSSs~Ir~ri~ 143 (144)
T TIGR02199 90 ELIG----ELKPDILVKGGDYKVET--LVGAELVESYGGQVVLLPFVEGRSTTAIIEKIL 143 (144)
T ss_pred HHHH----HhCCCEEEECCCCCCCc--chhHHHHHHcCCEEEEEeCCCCcCHHHHHHHHh
Confidence 6764 68999999999999843 2235566655 5899999999999999999996
No 16
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=99.93 E-value=2e-25 Score=190.35 Aligned_cols=123 Identities=34% Similarity=0.506 Sum_probs=102.9
Q ss_pred EEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCccccEEEecCCccccHHHHHH
Q 017744 68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNR 147 (366)
Q Consensus 68 V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vv~~~p~~~~~eFl~~ 147 (366)
|++.|+||++|.||+++|++|+++|+.++|++++|+....++.+|+++.+||++++++|+|||++++..|++ +|.+.
T Consensus 1 v~~~G~FDg~H~GH~~~l~~a~~~~~~~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~~~Vd~vi~~~~~~---~f~~~ 77 (125)
T TIGR01518 1 VLTYGTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYVDLVIPEKSWE---QKKQD 77 (125)
T ss_pred CEEcceeCCCCHHHHHHHHHHHHcCCEEEEEEechHHHhhcCCCCCCCHHHHHHHHHcCCCccEEecCCCcc---chHHH
Confidence 589999999999999999999999999999999998665445589999999999999999999997755543 45544
Q ss_pred HhhccCccEEEEcCCCCCCCCCCchHHHHHhC--CeEEEeccCCCCCHHHHHHHH
Q 017744 148 LFNEHKIDYIIHGDDPCLLPDGTDAYALAKKV--GRYKQIKRTEGVSSTDIVGRI 200 (366)
Q Consensus 148 ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~--g~~~~v~r~~~vSST~Ir~rI 200 (366)
+ ++++||++++|+|| .++++.+++. .++..+++++++|||.||+.|
T Consensus 78 l-~~~~~~~vv~G~D~------~g~~~~l~~~~~~~v~~v~~~~~vSST~Ir~~~ 125 (125)
T TIGR01518 78 I-IDFNIDVFVMGDDW------EGKFDFLKDECPLKVVYLPRTEGVSTTKIKKEI 125 (125)
T ss_pred H-HHcCCCEEEECCCc------cchHHHHhhccCcEEEEeCCCCCccHHHHHhhC
Confidence 3 57999999999999 2556677654 356778889999999999864
No 17
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=99.93 E-value=5.9e-26 Score=195.57 Aligned_cols=98 Identities=38% Similarity=0.702 Sum_probs=92.1
Q ss_pred eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCCCCcEEEcCCCCchHH
Q 017744 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKD 336 (366)
Q Consensus 257 ~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~~~~~~~d 336 (366)
+.|+++||||+||.||+++|++|+++||+|+|.+..|+.+...||+ .|+++.+||++++++|+|||+|++++||..+.+
T Consensus 2 ~rV~~~GtFDilH~GHi~~L~~Ak~lGd~liVv~a~de~~~~~~k~-~pi~~~~qR~evl~s~ryVD~vi~~~p~~~~~~ 80 (140)
T COG0615 2 KRVWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKR-KPIMPEEQRAEVLESLRYVDEVILGAPWDIKFE 80 (140)
T ss_pred cEEEEeeEEEEechhHHHHHHHHHHhCCeEEEEEeccHHHHHhcCC-CCCCCHHHHHHHHHcCcchheeeeCCccccChH
Confidence 4599999999999999999999999999999999999998875555 799999999999999999999999999999999
Q ss_pred HHHHcCCcEEEECCCCCCC
Q 017744 337 MITTFNICLVVHGTVSETN 355 (366)
Q Consensus 337 ~i~~~~~~~vv~G~~~~~~ 355 (366)
++++++||+|++|+||...
T Consensus 81 ~i~~~k~Div~lG~D~~~d 99 (140)
T COG0615 81 DIEEYKPDIVVLGDDQKFD 99 (140)
T ss_pred HHHHhCCCEEEECCCCcCC
Confidence 9999999999999999943
No 18
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.93 E-value=7e-25 Score=187.55 Aligned_cols=128 Identities=32% Similarity=0.496 Sum_probs=107.9
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCccccEEEecCCccccHHH
Q 017744 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF 144 (366)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vv~~~p~~~~~eF 144 (366)
+++|+++|+||++|.||+.+|++|+++++++++++++|+.....+.++++|.+||++++++|+|||+++...++ ++|
T Consensus 1 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~l~v~v~~d~~~~~~~~~~~~~~~~R~~~l~~~~~vd~v~~~~~~---~~f 77 (129)
T cd02171 1 MKVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFNAGKGKKAVIPYEQRAEILESIRYVDLVIPETNW---EQK 77 (129)
T ss_pred CcEEEEeeeeccCCHHHHHHHHHHHHhCCEEEEEEeccHhHHhcCCCCCCCHHHHHHHHHcCCccCEEecCCCc---cCh
Confidence 35799999999999999999999999999999999988743322337899999999999999999999753333 345
Q ss_pred HHHHhhccCccEEEEcCCCCCCCCCCchHHHHHhCCeEEEeccCCCCCHHHHHHHHHh
Q 017744 145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILS 202 (366)
Q Consensus 145 l~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~g~~~~v~r~~~vSST~Ir~rI~~ 202 (366)
++.+ ++++++++++|+|| .++++.+++.+++..++++.++|||.||++|..
T Consensus 78 ~~~~-~~l~~~~vv~G~d~------~g~~~~l~~~~~v~~~~~~~~iSSt~Ir~~i~~ 128 (129)
T cd02171 78 IEDI-KKYNVDVFVMGDDW------EGKFDFLKEYCEVVYLPRTKGISSTQLKEMLKK 128 (129)
T ss_pred HHHH-HHhCCCEEEECCCC------cchHHHHHhCcEEEEeCCCCCcChHHHHHHHhh
Confidence 5443 67899999999999 356889999999999999999999999999863
No 19
>PLN02413 choline-phosphate cytidylyltransferase
Probab=99.92 E-value=5.4e-25 Score=208.69 Aligned_cols=97 Identities=38% Similarity=0.702 Sum_probs=91.8
Q ss_pred CCCCCeEEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCCCCcEEEcC
Q 017744 252 PGPNARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGA 329 (366)
Q Consensus 252 ~~~~~~~v~~~GsFD~~h~GHi~~L~~A~~~g--d~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~ 329 (366)
+.....+||++|+||+||.||+++|++|+++| |+|||||++|+.++++||+ |+|+++||+++|++|+|||+|++++
T Consensus 23 ~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGr--PIm~~~ER~e~V~acKyVDeVV~~a 100 (294)
T PLN02413 23 PSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGK--TVMTEDERYESLRHCKWVDEVIPDA 100 (294)
T ss_pred CCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCC--CCCCHHHHHHHHHhcccccEEeeCC
Confidence 44456789999999999999999999999996 7999999999999999995 9999999999999999999999999
Q ss_pred CCCchHHHHHHcCCcEEEECC
Q 017744 330 PWEVTKDMITTFNICLVVHGT 350 (366)
Q Consensus 330 ~~~~~~d~i~~~~~~~vv~G~ 350 (366)
||.++.+|+++++||++++|+
T Consensus 101 P~~~t~efI~~~kpDiVvhGd 121 (294)
T PLN02413 101 PWVITQEFLDKHRIDYVAHDA 121 (294)
T ss_pred CccccHHHHHHhCCCEEEECC
Confidence 999999999999999999996
No 20
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=99.89 E-value=9.4e-24 Score=200.63 Aligned_cols=95 Identities=37% Similarity=0.636 Sum_probs=92.0
Q ss_pred eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCCCCcEEEcCCCCchHH
Q 017744 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKD 336 (366)
Q Consensus 257 ~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~~~~~~~d 336 (366)
..|+.+||||.+|.||.+.|++||++||+|||||++|+.+..+||+ |+|+++||.+++++||||||||.++|+..+.+
T Consensus 9 ~rVw~DGCfDm~HyGHanaLrQAkalGdkLivGVHsDeeI~~nKGp--PV~t~eERy~~v~~ikWVDEVV~~APyvtt~~ 86 (358)
T KOG2803|consen 9 VRVWADGCFDMVHYGHANALRQAKALGDKLIVGVHSDEEITLNKGP--PVFTDEERYEMVKAIKWVDEVVEGAPYVTTLE 86 (358)
T ss_pred eeEEeccchhhhhhhhhHHHHHHHHhCCeEEEEecchHHHHhcCCC--CcccHHHHHHHHhhcchhhhhhcCCCeeccHH
Confidence 4699999999999999999999999999999999999999999996 99999999999999999999999999999999
Q ss_pred HHHHcCCcEEEECCCCC
Q 017744 337 MITTFNICLVVHGTVSE 353 (366)
Q Consensus 337 ~i~~~~~~~vv~G~~~~ 353 (366)
+++++++|++|||+|-.
T Consensus 87 ~md~y~cd~vvHGdDit 103 (358)
T KOG2803|consen 87 WMDKYGCDYVVHGDDIT 103 (358)
T ss_pred HHHHhCCeEEEeCCcce
Confidence 99999999999999844
No 21
>PRK07143 hypothetical protein; Provisional
Probab=99.88 E-value=6.8e-22 Score=190.07 Aligned_cols=136 Identities=16% Similarity=0.279 Sum_probs=110.9
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhc-CCCCCCcHHHHHHHHhcCccccEEEecCCcc--c-
Q 017744 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KGPPVLSMEERLALVSGLKWVDEVIANAPYA--I- 140 (366)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~-K~~pi~t~eER~~ll~~~~~VD~vv~~~p~~--~- 140 (366)
.+.|+++|+|||+|.||+.+|++|++.++.++|...+++..... +.+++++.+||.++++++ ++|.++. .||+ +
T Consensus 15 ~~~vvaiG~FDGvH~GHq~Ll~~a~~~~~~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~~-Gvd~~~~-~~F~~~~a 92 (279)
T PRK07143 15 EKPTFVLGGFESFHLGHLELFKKAKESNDEIVIVIFKNPENLPKNTNKKFSDLNSRLQTLANL-GFKNIIL-LDFNEELQ 92 (279)
T ss_pred CCeEEEEccCCcCCHHHHHHHHHHHHCCCcEEEEEeCChHHhcccCcccCCCHHHHHHHHHHC-CCCEEEE-eCCCHHHh
Confidence 45799999999999999999999999988777766665543222 225699999999999998 7888876 4443 1
Q ss_pred ---cHHHHHHHhhccCccEEEEcCCCCCCCCCCchHHHHHhCC-eEEEecc----CCCCCHHHHHHHHHhc
Q 017744 141 ---TEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKR----TEGVSSTDIVGRILSS 203 (366)
Q Consensus 141 ---~~eFl~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~g-~~~~v~r----~~~vSST~Ir~rI~~~ 203 (366)
.++|++.++. ++++.||+|+||+||.++.|+++.|++.+ .+..++. +..||||.||+.|.++
T Consensus 93 ~ls~e~Fi~~ll~-l~~~~iVvG~Df~FG~~r~G~~~~L~~~~~~v~~v~~~~~~g~~ISST~IR~~l~~G 162 (279)
T PRK07143 93 NLSGNDFIEKLTK-NQVSFFVVGKDFRFGKNASWNADDLKEYFPNVHIVEILKINQQKISTSLLKEFIEFG 162 (279)
T ss_pred CCCHHHHHHHHHh-cCCCEEEECCCcccCCCCCCCHHHHHHhCCcEEEeCCEEcCCcEEcHHHHHHHHHcC
Confidence 1589988764 89999999999999999999999999988 5665553 4579999999999876
No 22
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=99.88 E-value=3.9e-22 Score=180.37 Aligned_cols=134 Identities=25% Similarity=0.378 Sum_probs=104.4
Q ss_pred EEEecccCcCCHHHHHHHHHHHHhCCe---eEEEEccchh--h--hhcCC-CCCCcHHHHHHHHhcCccccEEEecCCcc
Q 017744 68 VYMDGCFDLMHYGHANALRQAKALGDE---LVVGVVSDEE--I--IANKG-PPVLSMEERLALVSGLKWVDEVIANAPYA 139 (366)
Q Consensus 68 V~~~G~FD~lH~GH~~lL~qAk~lgd~---LvVgv~sd~~--i--~~~K~-~pi~t~eER~~ll~~~~~VD~vv~~~p~~ 139 (366)
|+++|+|||+|.||+++|++|+++|+. ..+.++.++. . .+.+. .++++.++|++++++++ ||+++. .||+
T Consensus 2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~-vd~v~~-~~f~ 79 (180)
T cd02064 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLG-VDYLLV-LPFD 79 (180)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcC-CCEEEE-eCCC
Confidence 789999999999999999999999752 3444444442 2 12232 68999999999999995 999987 3443
Q ss_pred -----cc-HHHHHHHhhccCccEEEEcCCCCCCCCCCchHHHHHhCC-----eEEEecc----CCCCCHHHHHHHHHhc
Q 017744 140 -----IT-EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-----RYKQIKR----TEGVSSTDIVGRILSS 203 (366)
Q Consensus 140 -----~~-~eFl~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~g-----~~~~v~r----~~~vSST~Ir~rI~~~ 203 (366)
.+ ++|++.++.+.+++++|+|+||+||.++.++.+.|++.+ ++..+++ +..||||.||+.|.++
T Consensus 80 ~~~~~~s~~~Fi~~il~~~~~~~ivvG~Df~FG~~~~g~~~~L~~~~~~~g~~v~~v~~~~~~~~~iSST~IR~~i~~G 158 (180)
T cd02064 80 KEFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPVTLDGERVSSTRIREALAEG 158 (180)
T ss_pred HHHHcCCHHHHHHHHHhhcCCeEEEEccCCCCCCCCCCCHHHHHHhhhhcCcEEEEeCcEecCCcEEcHHHHHHHHHhC
Confidence 12 478887776669999999999999999999988876644 3555655 3579999999999866
No 23
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.86 E-value=2.1e-21 Score=199.08 Aligned_cols=133 Identities=30% Similarity=0.454 Sum_probs=113.5
Q ss_pred CCeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCC--CCCCcHHHHHHHHhcCccccEEEecCCcccc
Q 017744 64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDEVIANAPYAIT 141 (366)
Q Consensus 64 ~~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~--~pi~t~eER~~ll~~~~~VD~vv~~~p~~~~ 141 (366)
..++|++.|+||++|.||+++|++|+++|+.++||+++|+.+...|+ .|+++.+||.+++++|++||++++.. ....
T Consensus 339 ~~~iv~~~G~fD~~H~GH~~~l~~a~~~~~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~~~vd~v~~~~-~~~~ 417 (473)
T PRK11316 339 GEKIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDWVVPFE-EDTP 417 (473)
T ss_pred CCeEEEEecccccCCHHHHHHHHHHHHhCCeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhcCcCCEEEeCC-CCCH
Confidence 35789999999999999999999999999999999999998876675 68999999999999999999998632 2233
Q ss_pred HHHHHHHhhccCccEEEEcCCCCCCCCCCchHHHHHhCCeEEEeccCCCCCHHHHHHHHHh
Q 017744 142 EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILS 202 (366)
Q Consensus 142 ~eFl~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~g~~~~v~r~~~vSST~Ir~rI~~ 202 (366)
++|+ ++++||++++|+||.+... .+.+...+..|+++.+++++++|||+|++||++
T Consensus 418 ~~~~----~~~~~d~vv~G~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~st~~i~~ri~~ 473 (473)
T PRK11316 418 QRLI----AEILPDLLVKGGDYKPEEI-AGSKEVWANGGEVKVLNFEDGCSTTNIIKKIRQ 473 (473)
T ss_pred HHHH----HHhCCCEEEECCCCCCCcc-ccHHHHHHcCCEEEEEcCCCCcCHHHHHHHHhC
Confidence 4554 5678999999999987643 345666778899999999999999999999963
No 24
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=99.86 E-value=5e-21 Score=186.51 Aligned_cols=135 Identities=24% Similarity=0.341 Sum_probs=106.6
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHhCCee---EEEEccchhh----hhcCC-CCCCcHHHHHHHHhcCccccEEEecCCc
Q 017744 67 RVYMDGCFDLMHYGHANALRQAKALGDEL---VVGVVSDEEI----IANKG-PPVLSMEERLALVSGLKWVDEVIANAPY 138 (366)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qAk~lgd~L---vVgv~sd~~i----~~~K~-~pi~t~eER~~ll~~~~~VD~vv~~~p~ 138 (366)
+|+++|+|||+|.||+++|++|+++|+.+ .+.++.|+.. .+.+. +++++.+||.++++++ +||.++. .||
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~-gVD~~~~-~~F 92 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAEL-GVDYVLV-LPF 92 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHc-CCCEEEE-ecC
Confidence 79999999999999999999999998643 2344444421 11222 6799999999999999 4999987 455
Q ss_pred c-----cc-HHHHHHHh-hccCccEEEEcCCCCCCCCCCchHHHHHhCC-----eEEEecc----CCCCCHHHHHHHHHh
Q 017744 139 A-----IT-EQFMNRLF-NEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-----RYKQIKR----TEGVSSTDIVGRILS 202 (366)
Q Consensus 139 ~-----~~-~eFl~~ll-~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~g-----~~~~v~r----~~~vSST~Ir~rI~~ 202 (366)
+ .+ ++|+++++ +++++++||+|+||+||.++.++++.+++.+ ++..++. +..||||.||+.|.+
T Consensus 93 ~~~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISST~IR~~I~~ 172 (305)
T PRK05627 93 DEEFAKLSAEEFIEDLLVKGLNAKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEVKEDGERVSSTAIRQALAE 172 (305)
T ss_pred CHHHhcCCHHHHHHHHHHhccCCCEEEECCCCCCCCCCCCCHHHHHHHHHHcCcEEEEeccEecCCCcCchHHHHHHHHc
Confidence 3 12 58998744 6799999999999999999999999998863 3454443 468999999999987
Q ss_pred c
Q 017744 203 S 203 (366)
Q Consensus 203 ~ 203 (366)
+
T Consensus 173 G 173 (305)
T PRK05627 173 G 173 (305)
T ss_pred C
Confidence 6
No 25
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=99.83 E-value=1.4e-20 Score=166.88 Aligned_cols=130 Identities=25% Similarity=0.425 Sum_probs=90.8
Q ss_pred CCeEEEEecccCcCCHHHHHHHHHHHHhC---Ce--eEEEEccchh-hhh-cCC-CCCCcHHHHHHHHhcCccccEEEec
Q 017744 64 KRVRVYMDGCFDLMHYGHANALRQAKALG---DE--LVVGVVSDEE-IIA-NKG-PPVLSMEERLALVSGLKWVDEVIAN 135 (366)
Q Consensus 64 ~~~~V~~~G~FD~lH~GH~~lL~qAk~lg---d~--LvVgv~sd~~-i~~-~K~-~pi~t~eER~~ll~~~~~VD~vv~~ 135 (366)
+.+.++++|+|||+|.||+.||++|.+.+ +. +++.+.+++. +.. .+. ..+++.+||.++++.+ +||+++.
T Consensus 4 ~~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~-Gvd~~~~- 81 (157)
T PF06574_consen 4 NKKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESL-GVDYVIV- 81 (157)
T ss_dssp -S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHT-TESEEEE-
T ss_pred CCCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHc-CCCEEEE-
Confidence 45689999999999999999999999997 22 3444444443 222 222 5699999999999998 8999876
Q ss_pred CCccc--c----HHHHHHHhh-ccCccEEEEcCCCCCCCCCCchHHHHHhCCe-----EEEecc----CCCCCHHH
Q 017744 136 APYAI--T----EQFMNRLFN-EHKIDYIIHGDDPCLLPDGTDAYALAKKVGR-----YKQIKR----TEGVSSTD 195 (366)
Q Consensus 136 ~p~~~--~----~eFl~~ll~-~l~~d~VV~G~D~~fg~~g~~~~~~lk~~g~-----~~~v~r----~~~vSST~ 195 (366)
.||+- . ++|++.++. ++++..||+|+||+||+++.++.+.|++.++ +..++. ...||||+
T Consensus 82 ~~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISStr 157 (157)
T PF06574_consen 82 IPFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGKNRSGDVELLKELGKEYGFEVEVVPPVKIDGEKISSTR 157 (157)
T ss_dssp E-CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESGGGEEEHHHHHHCTTTT-SEEEEE---EETTEE-SHHH
T ss_pred ecchHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCCCCCCCHHHHHHhcccCceEEEEECCEEcCCcEeCCCC
Confidence 33432 1 599998665 8999999999999999999999999999884 344443 34699986
No 26
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.82 E-value=3e-20 Score=161.89 Aligned_cols=88 Identities=22% Similarity=0.371 Sum_probs=82.2
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc-CCCCcEEEcCCCCch
Q 017744 256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVIIGAPWEVT 334 (366)
Q Consensus 256 ~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd~Vvi~~~~~~~ 334 (366)
++++++||||||+|+||+++|+||.++||.|||+|..+ ..| +|+|+++||+++++.. +..++|.+..+.+++
T Consensus 2 ~~iavypGSFDPiTnGHlDii~RA~~~Fd~viVaV~~n----p~K---~plFsleER~~l~~~~~~~l~nV~V~~f~~Ll 74 (159)
T COG0669 2 MKIAVYPGSFDPITNGHLDIIKRASALFDEVIVAVAIN----PSK---KPLFSLEERVELIREATKHLPNVEVVGFSGLL 74 (159)
T ss_pred CeeEEeCCCCCCCccchHHHHHHHHHhccEEEEEEEeC----CCc---CCCcCHHHHHHHHHHHhcCCCceEEEecccHH
Confidence 68999999999999999999999999999999999876 445 7999999999998876 899999999999999
Q ss_pred HHHHHHcCCcEEEECC
Q 017744 335 KDMITTFNICLVVHGT 350 (366)
Q Consensus 335 ~d~i~~~~~~~vv~G~ 350 (366)
+||++++++.++|||=
T Consensus 75 vd~ak~~~a~~ivRGL 90 (159)
T COG0669 75 VDYAKKLGATVLVRGL 90 (159)
T ss_pred HHHHHHcCCCEEEEec
Confidence 9999999999999993
No 27
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=99.82 E-value=7.3e-20 Score=176.93 Aligned_cols=134 Identities=18% Similarity=0.285 Sum_probs=103.6
Q ss_pred EEEecccCcCCHHHHHHHHHHHHhCC-----eeEEEEccchhh-h-hcCCCCCCcHHHHHHHHhcCccccEEEecCCcc-
Q 017744 68 VYMDGCFDLMHYGHANALRQAKALGD-----ELVVGVVSDEEI-I-ANKGPPVLSMEERLALVSGLKWVDEVIANAPYA- 139 (366)
Q Consensus 68 V~~~G~FD~lH~GH~~lL~qAk~lgd-----~LvVgv~sd~~i-~-~~K~~pi~t~eER~~ll~~~~~VD~vv~~~p~~- 139 (366)
++++|+|||+|.||+.+|++|++.++ ..++.+.+.+.. . +.+.+++++.+||.++++++ +||.++. .||+
T Consensus 1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~-Gvd~~~~-~~F~~ 78 (288)
T TIGR00083 1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIK-GVEQLLV-VVFDE 78 (288)
T ss_pred CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHc-CCCEEEE-eCCCH
Confidence 58999999999999999999998762 344444444432 2 22223499999999999998 8999987 4443
Q ss_pred ----cc-HHHHHHHh-hccCccEEEEcCCCCCCCCCCchHHHHHhCCeE-----EEecc---CCCCCHHHHHHHHHhc
Q 017744 140 ----IT-EQFMNRLF-NEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRY-----KQIKR---TEGVSSTDIVGRILSS 203 (366)
Q Consensus 140 ----~~-~eFl~~ll-~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~g~~-----~~v~r---~~~vSST~Ir~rI~~~ 203 (366)
++ ++|+++++ ++++++.||+|+||+||.++.|+++.|++.++. ..++. .+.||||.||+.|.++
T Consensus 79 ~~a~ls~e~Fi~~~l~~~l~~~~ivvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~~~~~~~~~~ISST~IR~~l~~G 156 (288)
T TIGR00083 79 EFANLSALQFIDQLIVKHLHVKFLVVGDDFRFGHDRQGDFLLLQLFGNTTIFCVIVKQLFCQDIRISSSAIRQALKNG 156 (288)
T ss_pred HHHcCCHHHHHHHHHHhccCCcEEEECCCccCCCCCCCCHHHHHHhccccCcEEEEeccccCCCeECHHHHHHHHHcC
Confidence 12 48998866 569999999999999999999999999997752 22222 3579999999999976
No 28
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=6.8e-20 Score=180.13 Aligned_cols=132 Identities=36% Similarity=0.500 Sum_probs=115.7
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCC--CCCCcHHHHHHHHhcCccccEEEecCCccccHH
Q 017744 66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDEVIANAPYAITEQ 143 (366)
Q Consensus 66 ~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~--~pi~t~eER~~ll~~~~~VD~vv~~~p~~~~~e 143 (366)
+.|+|.||||.+|.||..+|.||+++||.|+||++||.++.+.|| +|+.+++.|+..+.++..||+|++ |.++
T Consensus 333 ~vvfTNGcFDIlH~GHvsyL~~Ar~lgd~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L~~VD~vV~-----F~ed 407 (467)
T COG2870 333 KVVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALESVDLVVI-----FDED 407 (467)
T ss_pred eEEEecchhhhccccHHHHHHHHHhhCCeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhcccceEEEE-----ecCC
Confidence 389999999999999999999999999999999999999998898 899999999999999999999998 5566
Q ss_pred HHHHHhhccCccEEEEcCCCCCCCCCCchHHHHHhCCeEEEeccCCCCCHHHHHHHHHhc
Q 017744 144 FMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS 203 (366)
Q Consensus 144 Fl~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~g~~~~v~r~~~vSST~Ir~rI~~~ 203 (366)
...++++.+.||.+|.|-||.... =.|.-......|++..++..++.|||.|+++|.+.
T Consensus 408 TP~~LI~~~~PdilVKGgDy~~~~-i~g~~~v~~~GG~v~~i~f~~g~STt~ii~ki~~~ 466 (467)
T COG2870 408 TPEELIEAVKPDILVKGGDYKIEK-IVGADIVEAYGGEVLLIPFEEGKSTTKIIEKIRAK 466 (467)
T ss_pred CHHHHHHHhCcceEEccCCCChhh-ccchhhhhhcCCeEEEEecccCCcHHHHHHHHhcc
Confidence 667788889999999999996431 12333445578899999999999999999999753
No 29
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=99.81 E-value=2.9e-20 Score=176.01 Aligned_cols=94 Identities=38% Similarity=0.753 Sum_probs=89.5
Q ss_pred eEEEEcCccccCChHHHHHHHHHHhcCC--EEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCCCCcEEEcCCCCch
Q 017744 257 RVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVT 334 (366)
Q Consensus 257 ~~v~~~GsFD~~h~GHi~~L~~A~~~gd--~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~~~~~~ 334 (366)
..||.+|.||+||.||.+.|++|+++|- ||||||.+|+...+.||+ .+|+..||.+.|+.|+|||+|+..+||.++
T Consensus 64 VRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~--TVm~e~ERyE~lrHCryVDEVi~~APW~lt 141 (348)
T KOG2804|consen 64 VRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGR--TVMNENERYEALRHCRYVDEVIPNAPWTLT 141 (348)
T ss_pred eEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCc--eecChHHHHHHhhhhhhhhhhccCCCcccc
Confidence 4699999999999999999999999984 999999999999999994 999999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEECCCC
Q 017744 335 KDMITTFNICLVVHGTVS 352 (366)
Q Consensus 335 ~d~i~~~~~~~vv~G~~~ 352 (366)
.+|+++++||+|.|.+..
T Consensus 142 ~EFL~~HKIDfVAHDdIP 159 (348)
T KOG2804|consen 142 PEFLEKHKIDFVAHDDIP 159 (348)
T ss_pred HHHHHhcccceeeccCcc
Confidence 999999999999998653
No 30
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.80 E-value=1.9e-19 Score=177.01 Aligned_cols=100 Identities=33% Similarity=0.531 Sum_probs=95.0
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCCCCcEEEcCCCCchH
Q 017744 256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTK 335 (366)
Q Consensus 256 ~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~~~~~~~ 335 (366)
.++|++.||||++|.||+.+|++|+++||.||||++||.++++.||..+|+.+++.|+..+.++..||.|++.+ ++.+.
T Consensus 332 ~~vvfTNGcFDIlH~GHvsyL~~Ar~lgd~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L~~VD~vV~F~-edTP~ 410 (467)
T COG2870 332 KKVVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALESVDLVVIFD-EDTPE 410 (467)
T ss_pred CeEEEecchhhhccccHHHHHHHHHhhCCeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhcccceEEEEec-CCCHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999987 56789
Q ss_pred HHHHHcCCcEEEECCCCCCCC
Q 017744 336 DMITTFNICLVVHGTVSETNT 356 (366)
Q Consensus 336 d~i~~~~~~~vv~G~~~~~~~ 356 (366)
++|+.++||+.|+|-||+...
T Consensus 411 ~LI~~~~PdilVKGgDy~~~~ 431 (467)
T COG2870 411 ELIEAVKPDILVKGGDYKIEK 431 (467)
T ss_pred HHHHHhCcceEEccCCCChhh
Confidence 999999999999999998654
No 31
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=99.79 E-value=4.4e-19 Score=151.24 Aligned_cols=95 Identities=38% Similarity=0.600 Sum_probs=85.0
Q ss_pred EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCCCCcEEEcCCCCchHHHH
Q 017744 259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMI 338 (366)
Q Consensus 259 v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~~~~~~~d~i 338 (366)
|++.|+||++|.||.++|++|+++|++++|||++|+....+| + .|+++++||.+++++|+|||.|+...++....+.+
T Consensus 1 v~~~G~FDg~H~GH~~~l~~a~~~~~~~iv~v~~d~~~~~~~-~-~~i~~~eeR~~~l~~~~~Vd~vi~~~~~~~f~~~l 78 (125)
T TIGR01518 1 VLTYGTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQ-K-KAYHSYEHRKLILETIRYVDLVIPEKSWEQKKQDI 78 (125)
T ss_pred CEEcceeCCCCHHHHHHHHHHHHcCCEEEEEEechHHHhhcC-C-CCCCCHHHHHHHHHcCCCccEEecCCCccchHHHH
Confidence 578899999999999999999999999999999998765433 3 69999999999999999999998877777777778
Q ss_pred HHcCCcEEEECCCCCCC
Q 017744 339 TTFNICLVVHGTVSETN 355 (366)
Q Consensus 339 ~~~~~~~vv~G~~~~~~ 355 (366)
+++++++++.|+||.++
T Consensus 79 ~~~~~~~vv~G~D~~g~ 95 (125)
T TIGR01518 79 IDFNIDVFVMGDDWEGK 95 (125)
T ss_pred HHcCCCEEEECCCccch
Confidence 99999999999999654
No 32
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.79 E-value=9.2e-19 Score=150.99 Aligned_cols=98 Identities=36% Similarity=0.696 Sum_probs=88.5
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCCCCcEEEcCCCCchH
Q 017744 256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTK 335 (366)
Q Consensus 256 ~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~~~~~~~ 335 (366)
|++|++.|+||++|.||+.+|++|++++|+++|+++.|+.++++|+ .|+++++||++++++|++||.|++.+|+....
T Consensus 1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~l~v~v~~~~~~~~~~~--~~~~~~~eR~~~l~~~~~vd~v~~~~~~~~~~ 78 (136)
T cd02170 1 MKRVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKR--RPILPEEQRAEVVEALKYVDEVILGHPWSYFK 78 (136)
T ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECCcHHHHhcCC--CCCCCHHHHHHHHHcCCCcCEEEECCCCCHhH
Confidence 5789999999999999999999999999999999999988776664 49999999999999999999999999887655
Q ss_pred HHHHHcCCcEEEECCCCCCCC
Q 017744 336 DMITTFNICLVVHGTVSETNT 356 (366)
Q Consensus 336 d~i~~~~~~~vv~G~~~~~~~ 356 (366)
.+.+++++++|.|+||..+.
T Consensus 79 -~l~~~~~~~vv~G~d~~fg~ 98 (136)
T cd02170 79 -PLEELKPDVIVLGDDQKNGV 98 (136)
T ss_pred -HHHHHCCCEEEECCCCCCCC
Confidence 46789999999999997653
No 33
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.79 E-value=9.5e-19 Score=153.05 Aligned_cols=101 Identities=33% Similarity=0.543 Sum_probs=91.4
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCCCCcEEEcCCCCch
Q 017744 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVT 334 (366)
Q Consensus 255 ~~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~~~~~~ 334 (366)
++++|++.|+||.+|.||+.+|++|+++++.++|+|+.|+...+.|+...|+++++||.+++++|++||.|++.++ ...
T Consensus 10 ~~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f~~-~~~ 88 (144)
T TIGR02199 10 GKKIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIFDE-DTP 88 (144)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHhCCccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEECCC-CCH
Confidence 4689999999999999999999999999999999999999887667654689999999999999999999999764 356
Q ss_pred HHHHHHcCCcEEEECCCCCCCC
Q 017744 335 KDMITTFNICLVVHGTVSETNT 356 (366)
Q Consensus 335 ~d~i~~~~~~~vv~G~~~~~~~ 356 (366)
.+|+++++++++|.|+||....
T Consensus 89 ~~fi~~l~~~~vv~G~d~~~~~ 110 (144)
T TIGR02199 89 EELIGELKPDILVKGGDYKVET 110 (144)
T ss_pred HHHHHHhCCCEEEECCCCCCCc
Confidence 8999999999999999998644
No 34
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=99.78 E-value=1.5e-18 Score=151.75 Aligned_cols=99 Identities=32% Similarity=0.483 Sum_probs=89.7
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCCCCcEEEcCCCCch
Q 017744 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVT 334 (366)
Q Consensus 255 ~~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~~~~~~ 334 (366)
+.++|++.|+||.+|.||..+|++|+++++.++|++.+|+.++..|+ +|+++++||++++++|++||.|++.+ ...+
T Consensus 3 ~~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~vv~~~~d~~~~~~~~--~~i~~~~eR~~~l~~lg~VD~vi~~~-~~~~ 79 (144)
T cd02172 3 GKTVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKGPG--RPIFPEDLRAEVLAALGFVDYVVLFD-NPTA 79 (144)
T ss_pred CCEEEEEecccCCCCHHHHHHHHHHHHhCCeEEEEEeChHHhccCCC--CCCCCHHHHHHHHHccCCccEEEECC-CCCH
Confidence 45789999999999999999999999999999999999988776553 69999999999999999999999874 5678
Q ss_pred HHHHHHcCCcEEEECCCCCCCC
Q 017744 335 KDMITTFNICLVVHGTVSETNT 356 (366)
Q Consensus 335 ~d~i~~~~~~~vv~G~~~~~~~ 356 (366)
.+|+++++++++|+|.||.-+.
T Consensus 80 ~~fi~~l~~~~vv~G~d~~fg~ 101 (144)
T cd02172 80 LEIIDALQPNIYVKGGDYENPE 101 (144)
T ss_pred HHHHHHhCCCEEEECCCcccCc
Confidence 9999999999999999997653
No 35
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=99.78 E-value=2.4e-18 Score=166.83 Aligned_cols=137 Identities=22% Similarity=0.305 Sum_probs=105.4
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHhCC-----eeEEEEccchhh--hhcCC-CCCCcHHHHHHHHhcCccccEEEecC
Q 017744 65 RVRVYMDGCFDLMHYGHANALRQAKALGD-----ELVVGVVSDEEI--IANKG-PPVLSMEERLALVSGLKWVDEVIANA 136 (366)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qAk~lgd-----~LvVgv~sd~~i--~~~K~-~pi~t~eER~~ll~~~~~VD~vv~~~ 136 (366)
...|+++|+|||+|+||+.+|++|++.++ .+++...+.+.. .+.+. ..+++.++|.+.++.+ +||.++. .
T Consensus 15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~-gvd~~~v-~ 92 (304)
T COG0196 15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGY-GVDALVV-L 92 (304)
T ss_pred CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhc-CCcEEEE-E
Confidence 34799999999999999999999998762 233333333321 11121 3489999999999998 8999887 3
Q ss_pred Ccc--cc----HHHHHHHhhccCccEEEEcCCCCCCCCCCchHHHHHhCCe----EEEecc----CCCCCHHHHHHHHHh
Q 017744 137 PYA--IT----EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR----YKQIKR----TEGVSSTDIVGRILS 202 (366)
Q Consensus 137 p~~--~~----~eFl~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~g~----~~~v~r----~~~vSST~Ir~rI~~ 202 (366)
+|+ +. ++|++.+++.++++.||+|+||+||.++.++.++|+..|+ +.+++. ...||||.||+.|.+
T Consensus 93 ~F~~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF~FGk~~~g~~~~L~~~~~~gf~v~~v~~~~~~~~~iSSt~IR~~L~~ 172 (304)
T COG0196 93 DFDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRFGKGRQGNAELLRELGQKGFEVTIVPKINEEGIRISSTAIRQALRE 172 (304)
T ss_pred eCCHhHhhCCHHHHHHHHHhccCCcEEEEecccccCCCCCCCHHHHHHhccCCceEEEeccEecCCcEEchHHHHHHHhc
Confidence 343 22 4899877789999999999999999999999999999884 444444 235999999999986
Q ss_pred c
Q 017744 203 S 203 (366)
Q Consensus 203 ~ 203 (366)
+
T Consensus 173 g 173 (304)
T COG0196 173 G 173 (304)
T ss_pred C
Confidence 5
No 36
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.77 E-value=2.2e-18 Score=147.39 Aligned_cols=98 Identities=34% Similarity=0.587 Sum_probs=85.5
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCCCCcEEEcCCCCchH
Q 017744 256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTK 335 (366)
Q Consensus 256 ~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~~~~~~~ 335 (366)
|++|++.|+||++|.||+.+|++|++++++++|+|++|+. ...|++ .|+++++||.+++++|++||+|+...++....
T Consensus 1 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~l~v~v~~d~~-~~~~~~-~~~~~~~~R~~~l~~~~~vd~v~~~~~~~~f~ 78 (129)
T cd02171 1 MKVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDEF-NAGKGK-KAVIPYEQRAEILESIRYVDLVIPETNWEQKI 78 (129)
T ss_pred CcEEEEeeeeccCCHHHHHHHHHHHHhCCEEEEEEeccHh-HHhcCC-CCCCCHHHHHHHHHcCCccCEEecCCCccChH
Confidence 5789999999999999999999999999999999999974 344544 69999999999999999999998765555566
Q ss_pred HHHHHcCCcEEEECCCCCCC
Q 017744 336 DMITTFNICLVVHGTVSETN 355 (366)
Q Consensus 336 d~i~~~~~~~vv~G~~~~~~ 355 (366)
+.++++++++++.|+||+++
T Consensus 79 ~~~~~l~~~~vv~G~d~~g~ 98 (129)
T cd02171 79 EDIKKYNVDVFVMGDDWEGK 98 (129)
T ss_pred HHHHHhCCCEEEECCCCcch
Confidence 76789999999999999654
No 37
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.75 E-value=6.8e-18 Score=144.50 Aligned_cols=130 Identities=19% Similarity=0.263 Sum_probs=98.0
Q ss_pred EEEecccCcCCHHHHHHHHHHHHhC-CeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCcc-ccEEEe-cCCc---ccc
Q 017744 68 VYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKW-VDEVIA-NAPY---AIT 141 (366)
Q Consensus 68 V~~~G~FD~lH~GH~~lL~qAk~lg-d~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~~-VD~vv~-~~p~---~~~ 141 (366)
++++|+||++|.||+.++++|++.+ +.++|++.+++.... +..++++.++|+++++.+.. ++.++. +.+. ..+
T Consensus 2 ~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~R~~~l~~~~~~~~~v~~~~~~~~~~~~~ 80 (143)
T cd02039 2 GIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKK-RNKDPFSLHERVEMLKEILKDRLKVVPVDFPEVKILLA 80 (143)
T ss_pred eEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhhc-ccccCCCHHHHHHHHHHhccCCcEEEEEecChhhccCH
Confidence 7899999999999999999999999 999999988765332 13578999999999999863 666654 2221 111
Q ss_pred HHHHHHHhhccCccEEEEcCCCCCCCCCCchHHHHHhC---CeEEEeccC---CCCCHHHHHHH
Q 017744 142 EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKV---GRYKQIKRT---EGVSSTDIVGR 199 (366)
Q Consensus 142 ~eFl~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~---g~~~~v~r~---~~vSST~Ir~r 199 (366)
.+|+..++..++++++++|.|+.+|.+++++ +.++.. -++..+++. ..||||.||++
T Consensus 81 ~~~~~~~~~~~~~~~~v~G~d~~~~~~~~~~-~~~~~~~~~~~vv~~~~~~~~~~iSSt~IR~~ 143 (143)
T cd02039 81 VVFILKILLKVGPDKVVVGEDFAFGKNASYN-KDLKELFLDIEIVEVPRVRDGKKISSTLIREL 143 (143)
T ss_pred HHHHHHHHHHcCCcEEEECCccccCCchhhh-HHHHHhCCceEEEeeEecCCCcEEehHHhhcC
Confidence 2466666677899999999999999988775 333332 245555664 57999999974
No 38
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.72 E-value=8.9e-18 Score=148.45 Aligned_cols=132 Identities=25% Similarity=0.328 Sum_probs=95.0
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCccccEEEecCCccccH---
Q 017744 66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITE--- 142 (366)
Q Consensus 66 ~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vv~~~p~~~~~--- 142 (366)
.+|++.|+||++|.||..+|++|++++++|+||+++|+.+.++|..|+++.++|+++++. +++.+.+...+.+.+
T Consensus 2 ~~v~~gGtFDplH~GH~~ll~~A~~~~d~livgi~~d~~~~~~K~~~i~~~e~R~~~v~~--~~~~~~~~~~~~i~~i~d 79 (153)
T PRK00777 2 MKVAVGGTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLKK--FLKAVEYDREYEIVKIDD 79 (153)
T ss_pred cEEEEecccCCCCHHHHHHHHHHHHcCCEEEEEEcCCccccccCCCCCCCHHHHHHHHHH--HHHhcCCCCcEEEEeccc
Confidence 479999999999999999999999999999999999987766666899999999999996 566554433333221
Q ss_pred HHHHHHhhccCccEEEEcCCCCCCCCCCchHHHHHhCC----eEEEecc-----CCCCCHHHHHHHHHhc
Q 017744 143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----RYKQIKR-----TEGVSSTDIVGRILSS 203 (366)
Q Consensus 143 eFl~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~g----~~~~v~r-----~~~vSST~Ir~rI~~~ 203 (366)
.|.... . .++|++|+|+|...+ +...-+..++.| ++..++. ++.+|||.||+++.+.
T Consensus 80 ~~gp~~-~-~~~d~ivvs~et~~~--~~~in~~r~~~gl~~l~i~~v~~~~~~~~~~~SSt~Ir~~~~~~ 145 (153)
T PRK00777 80 PYGPAL-E-DDFDAIVVSPETYPG--ALKINEIRRERGLKPLEIVVIDFVLAEDGKPISSTRIRRGEIDE 145 (153)
T ss_pred cCCCcc-c-cCCCEEEEChhhhhh--HHHHHHHHHHCCCCceEEEEEeeeecCCCCeeeHHHHHHhhhcc
Confidence 121111 2 369999999995433 122223334444 2444554 5679999999988754
No 39
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.72 E-value=2.3e-17 Score=169.19 Aligned_cols=101 Identities=31% Similarity=0.450 Sum_probs=93.4
Q ss_pred CCCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCCCCcEEEcCCCCc
Q 017744 254 PNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEV 333 (366)
Q Consensus 254 ~~~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~~~~~ 333 (366)
.+.++|++.|+||++|.||+++|++|+++||+|+|||++|+.++..||.++|+++++||.+.+++|++||+|+..+ +..
T Consensus 338 ~~~~iv~~~G~fD~~H~GH~~~l~~a~~~~~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~~~vd~v~~~~-~~~ 416 (473)
T PRK11316 338 RGEKIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDWVVPFE-EDT 416 (473)
T ss_pred cCCeEEEEecccccCCHHHHHHHHHHHHhCCeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhcCcCCEEEeCC-CCC
Confidence 3569999999999999999999999999999999999999999888987689999999999999999999998875 457
Q ss_pred hHHHHHHcCCcEEEECCCCCCC
Q 017744 334 TKDMITTFNICLVVHGTVSETN 355 (366)
Q Consensus 334 ~~d~i~~~~~~~vv~G~~~~~~ 355 (366)
..+++++++||++++|+||...
T Consensus 417 ~~~~~~~~~~d~vv~G~d~~~~ 438 (473)
T PRK11316 417 PQRLIAEILPDLLVKGGDYKPE 438 (473)
T ss_pred HHHHHHHhCCCEEEECCCCCCC
Confidence 8899999999999999999644
No 40
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.70 E-value=8.9e-17 Score=139.91 Aligned_cols=91 Identities=22% Similarity=0.320 Sum_probs=78.9
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHh-cCCCCcEEEcCC-CCc
Q 017744 256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAP-WEV 333 (366)
Q Consensus 256 ~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~-~~~Vd~Vvi~~~-~~~ 333 (366)
|++++++|||||+|.||++++++|.+++|+|+|++..+ ..| .++++.++|..+++. ++..++|.+... .++
T Consensus 1 mkiai~~GSFDPih~GHl~ii~~A~~~~D~v~v~v~~n----p~K---~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~~l 73 (140)
T PRK13964 1 MKIAIYPGSFDPFHKGHLNILKKALKLFDKVYVVVSIN----PDK---SNASDLDSRFKNVKNKLKDFKNVEVLINENKL 73 (140)
T ss_pred CeEEEEeeeeCCCCHHHHHHHHHHHHhCCEEEEEeccC----CCC---CCCCCHHHHHHHHHHHHcCCCCcEEecCcCCc
Confidence 46899999999999999999999999999999999876 345 479999999998865 477788877653 689
Q ss_pred hHHHHHHcCCcEEEECCCCC
Q 017744 334 TKDMITTFNICLVVHGTVSE 353 (366)
Q Consensus 334 ~~d~i~~~~~~~vv~G~~~~ 353 (366)
+++++++.+++++|||=...
T Consensus 74 ~v~~~~~~~a~~ivrGlR~~ 93 (140)
T PRK13964 74 TAEIAKKLGANFLIRSARNN 93 (140)
T ss_pred HHHHHHHCCCeEEEEecCCC
Confidence 99999999999999995543
No 41
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.65 E-value=7.2e-16 Score=136.98 Aligned_cols=87 Identities=21% Similarity=0.363 Sum_probs=80.0
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHh-cCCCCcEEEcCCCCch
Q 017744 256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVT 334 (366)
Q Consensus 256 ~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~-~~~Vd~Vvi~~~~~~~ 334 (366)
|++++++|||||+|.||+.++++|++.+|+|+|+++.+. .| +|.++.++|.++++. +++++.|.+...++.+
T Consensus 1 ~~igi~gGsFdP~H~GHl~~~~~a~~~~d~v~v~~~~~~----~k---~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t 73 (159)
T PRK00168 1 MKIAIYPGSFDPITNGHLDIIERASRLFDEVIVAVAINP----SK---KPLFSLEERVELIREATAHLPNVEVVSFDGLL 73 (159)
T ss_pred CcEEEEeeecCCCCHHHHHHHHHHHHHCCEEEEEECCCC----CC---CCCCCHHHHHHHHHHHHcCCCCEEEecCCccH
Confidence 478999999999999999999999999999999998763 34 589999999999998 7999999998878889
Q ss_pred HHHHHHcCCcEEEEC
Q 017744 335 KDMITTFNICLVVHG 349 (366)
Q Consensus 335 ~d~i~~~~~~~vv~G 349 (366)
.++++.++++++++|
T Consensus 74 ~~~~~~~~~~~~~~g 88 (159)
T PRK00168 74 VDFAREVGATVIVRG 88 (159)
T ss_pred HHHHHHcCCCEEEec
Confidence 999999999999999
No 42
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.60 E-value=1.7e-15 Score=133.87 Aligned_cols=93 Identities=23% Similarity=0.314 Sum_probs=73.9
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc----CCCCcEEEc---
Q 017744 256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC----RYVDEVIIG--- 328 (366)
Q Consensus 256 ~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~----~~Vd~Vvi~--- 328 (366)
++.|++.|+|||+|.||+.+|++|+.++|+|+|||++|+.++++|+ .|++++++|+++++.+ ...+.+.+.
T Consensus 1 ~~~v~~gGtFDplH~GH~~ll~~A~~~~d~livgi~~d~~~~~~K~--~~i~~~e~R~~~v~~~~~~~~~~~~~~i~~i~ 78 (153)
T PRK00777 1 MMKVAVGGTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYKK--HKVRPYEVRLKNLKKFLKAVEYDREYEIVKID 78 (153)
T ss_pred CcEEEEecccCCCCHHHHHHHHHHHHcCCEEEEEEcCCccccccCC--CCCCCHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 3579999999999999999999999999999999999998877774 6999999999999855 223344432
Q ss_pred CCCCchHHHHHHcCCcEEEECCC-CCC
Q 017744 329 APWEVTKDMITTFNICLVVHGTV-SET 354 (366)
Q Consensus 329 ~~~~~~~d~i~~~~~~~vv~G~~-~~~ 354 (366)
++++.+. . .++|++|.|+| |.+
T Consensus 79 d~~gp~~---~-~~~d~ivvs~et~~~ 101 (153)
T PRK00777 79 DPYGPAL---E-DDFDAIVVSPETYPG 101 (153)
T ss_pred ccCCCcc---c-cCCCEEEEChhhhhh
Confidence 3444432 2 36999999999 444
No 43
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=99.59 E-value=1.2e-14 Score=132.08 Aligned_cols=126 Identities=21% Similarity=0.206 Sum_probs=93.9
Q ss_pred ecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcC-cccc---------EEEecCCc--
Q 017744 71 DGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVD---------EVIANAPY-- 138 (366)
Q Consensus 71 ~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~-~~VD---------~vv~~~p~-- 138 (366)
.-.||++|.||..++++|.+.++.+.|.+.+. + .+.++.++|++|++.. +..+ ..+....+
T Consensus 5 ~~~~DPiH~GHl~i~~~a~~~~d~~~V~v~p~------~-~~~~s~e~R~~Mi~~a~~~~~~v~v~~~~~~~v~~~~~~~ 77 (182)
T smart00764 5 VMNANPFTLGHRYLVEQAAAECDWVHLFVVSE------D-ASLFSFDERFALVKKGTKDLDNVTVHSGSDYIISRATFPS 77 (182)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCceEEEEEeC------C-CCCCCHHHHHHHHHHHhccCCCEEEEecCCceeccccChh
Confidence 34699999999999999999998888777653 2 3567999999999953 2212 11111111
Q ss_pred cc--------------c-HHHHHHHhhccCccEEEEcCCCCCCCCCCchHHHHHhCC----eEEEecc----CCCCCHHH
Q 017744 139 AI--------------T-EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----RYKQIKR----TEGVSSTD 195 (366)
Q Consensus 139 ~~--------------~-~eFl~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~g----~~~~v~r----~~~vSST~ 195 (366)
-+ + ++|++.+.+++++..|++|+||+||.++.|+.+.|++.+ ++..+++ ++.+|||.
T Consensus 78 ~~~~~~~~~~~~~a~lsa~~Fi~~L~~~l~~~~ivvG~df~FG~~~~G~~~~L~~~~~~g~~v~~I~r~~~~g~~iSST~ 157 (182)
T smart00764 78 YFLKEQDVVIKSQTTLDLRIFRKYIAPALGITHRYVGEEPFSPVTAIYNQTMKQTLLSPAIEVVEIERKKANGQPISAST 157 (182)
T ss_pred hhcCchhHHHHHHhcCCHHHHHHHHHHHcCceEEEEcCCCCCCCCCccCHHHHHHHhhCCCEEEEEecccCCCcEECHHH
Confidence 01 0 378865557799999999999999999999999988764 3455555 34699999
Q ss_pred HHHHHHhc
Q 017744 196 IVGRILSS 203 (366)
Q Consensus 196 Ir~rI~~~ 203 (366)
||+.|.++
T Consensus 158 IR~~L~~G 165 (182)
T smart00764 158 VRKLLKEG 165 (182)
T ss_pred HHHHHHcC
Confidence 99999755
No 44
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.57 E-value=1.8e-14 Score=127.94 Aligned_cols=129 Identities=20% Similarity=0.193 Sum_probs=87.7
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhc-CccccEEEecCCccccHHH
Q 017744 66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPYAITEQF 144 (366)
Q Consensus 66 ~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~-~~~VD~vv~~~p~~~~~eF 144 (366)
+++++.|+||++|.||..++++|++.+|+|++++..++ .| .++.+.++|++|++. ++.++.+.+..--+++.++
T Consensus 2 ~igi~gGsFdP~H~GHl~~~~~a~~~~d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t~~~ 76 (159)
T PRK00168 2 KIAIYPGSFDPITNGHLDIIERASRLFDEVIVAVAINP----SK-KPLFSLEERVELIREATAHLPNVEVVSFDGLLVDF 76 (159)
T ss_pred cEEEEeeecCCCCHHHHHHHHHHHHHCCEEEEEECCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEEecCCccHHHH
Confidence 47899999999999999999999999999999987653 24 578999999999998 8788887664322344454
Q ss_pred HHHHhhccCccEEEEcCCCCCCCCCCchHHHHHh-C----CeEEEeccC--CCCCHHHHHHHHHhc
Q 017744 145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK-V----GRYKQIKRT--EGVSSTDIVGRILSS 203 (366)
Q Consensus 145 l~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~-~----g~~~~v~r~--~~vSST~Ir~rI~~~ 203 (366)
+ +++++++++.|-|-....+..-......+ . ..+..+... ..||||.||+++..+
T Consensus 77 ~----~~~~~~~~~~gl~~w~d~e~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~i~~g 138 (159)
T PRK00168 77 A----REVGATVIVRGLRAVSDFEYEFQMAGMNRKLAPEIETVFLMPSPEYSFISSSLVKEVARLG 138 (159)
T ss_pred H----HHcCCCEEEecCcchhhHHHHHHHHHhCCCCCCCCcEEEEeCCCCcceecHHHHHHHHHcC
Confidence 4 56789999999442211110000000111 1 112222222 269999999999855
No 45
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.57 E-value=3.2e-14 Score=138.37 Aligned_cols=130 Identities=18% Similarity=0.191 Sum_probs=96.8
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcC-c---------cccEEEe
Q 017744 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-K---------WVDEVIA 134 (366)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~-~---------~VD~vv~ 134 (366)
.+++.+.|+||++|.||..++++|.+.++.++|.+.+. + .+.++.++|++|++.. + +-|.++.
T Consensus 114 ~~~~~~~~~FDPiH~GHl~ii~~a~~~~d~~~V~i~~~------~-~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~l~v~ 186 (297)
T cd02169 114 KKIAAIVMNANPFTLGHRYLVEKAAAENDWVHLFVVSE------D-KSLFSFADRFKLVKKGTKHLKNVTVHSGGDYIIS 186 (297)
T ss_pred CceEEEEecCCCCchHHHHHHHHHHhhCCeEEEEEEcC------C-CCCCCHHHHHHHHHHHhCCCCCEEEEecCCeeec
Confidence 46789999999999999999999999999888777552 2 4678999999999952 1 1222222
Q ss_pred cCCc----------------ccc-HHHHHHHh-hccCccEEEEcCCCCCCCCCCchHHHHHhCCe-----EEEecc----
Q 017744 135 NAPY----------------AIT-EQFMNRLF-NEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR-----YKQIKR---- 187 (366)
Q Consensus 135 ~~p~----------------~~~-~eFl~~ll-~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~g~-----~~~v~r---- 187 (366)
..+| .++ ++|++ ++ +++++..||+|+||+||.++.|+..+++. |+ +..++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~a~lsa~~Fi~-iL~~~l~~~~ivvG~Df~FG~~r~G~~~l~~~-~~~~gf~v~~v~~~~~~ 264 (297)
T cd02169 187 SATFPSYFIKEQDVVIKAQTALDARIFRK-YIAPALNITKRYVGEEPFSRVTAIYNQTMQEE-LLSPAIEVIEIERKKYD 264 (297)
T ss_pred cccChhhhcCChhHHHHHHhcCCHHHHHH-HHHHHcCCcEEEEcCCCCCCCcchhHHHHHHh-cccCCCEEEEecccccC
Confidence 2111 000 28887 66 56999999999999999999999555555 42 344443
Q ss_pred CCCCCHHHHHHHHHhc
Q 017744 188 TEGVSSTDIVGRILSS 203 (366)
Q Consensus 188 ~~~vSST~Ir~rI~~~ 203 (366)
++.||||.||+.|.++
T Consensus 265 g~~ISST~IR~~l~~G 280 (297)
T cd02169 265 GQPISASTVRQLLKEG 280 (297)
T ss_pred CcEEcHHHHHHHHHcC
Confidence 3579999999999876
No 46
>PLN02388 phosphopantetheine adenylyltransferase
Probab=99.56 E-value=2.8e-15 Score=135.15 Aligned_cols=138 Identities=18% Similarity=0.198 Sum_probs=92.6
Q ss_pred CCCCCeEEEEecccCcCCHHHHHHHHHHHHhC-CeeEEEEccchhhhhcCC-CCCCcHHHHHHHHhcCc----c---ccE
Q 017744 61 GKKKRVRVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKG-PPVLSMEERLALVSGLK----W---VDE 131 (366)
Q Consensus 61 ~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~lg-d~LvVgv~sd~~i~~~K~-~pi~t~eER~~ll~~~~----~---VD~ 131 (366)
.......|+++|+||++|.||+.||++|.++| +.+++|+++++...+.+. ..+.+.++|.+.++..- . ++.
T Consensus 15 ~~~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~~~~p~~~~~i 94 (177)
T PLN02388 15 PPNSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLSKKQFAELIQPIEERMHNVEEYIKSIKPELVVQA 94 (177)
T ss_pred CCCcCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhcccCCCcccCCHHHHHHHHHHHHHHcCCCceEEE
Confidence 33445689999999999999999999999998 479999999997533222 57999999999998631 1 122
Q ss_pred EEecCCccccHHHHHHHhhccCccEEEEcCCCCCCCCCCchHHHHHhCCe--EEEec---c---CCCCCHHHHHHHHHhc
Q 017744 132 VIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR--YKQIK---R---TEGVSSTDIVGRILSS 203 (366)
Q Consensus 132 vv~~~p~~~~~eFl~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~g~--~~~v~---r---~~~vSST~Ir~rI~~~ 203 (366)
+-+..||..+. ..-++|++|++..-..|...-..+...+.... +..++ . ...||||+||+++.+.
T Consensus 95 ~~i~D~~Gpt~-------~~~~~d~LVVS~ET~~g~~~IN~~R~e~Gl~pL~i~~v~~v~~~~~~~kiSST~iR~~~~~~ 167 (177)
T PLN02388 95 EPIIDPYGPSI-------VDENLEAIVVSKETLPGGLSVNKKRAERGLSQLKIEVVDIVPEESTGNKLSSTTLRRLEAEK 167 (177)
T ss_pred EEecCCCCCcc-------cCCCCCEEEEcHhHhhhHHHHHHHHHHCCCCCeEEEEEEeEecCCCCCccCHHHHHHHHHHH
Confidence 22345554331 12368999999887666433332222221112 22221 1 3579999999999876
Q ss_pred cc
Q 017744 204 ME 205 (366)
Q Consensus 204 ~~ 205 (366)
.+
T Consensus 168 ~~ 169 (177)
T PLN02388 168 AV 169 (177)
T ss_pred HH
Confidence 54
No 47
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.55 E-value=7.3e-14 Score=124.97 Aligned_cols=125 Identities=23% Similarity=0.346 Sum_probs=84.5
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHh-cCcccc-E---EEecCCcccc
Q 017744 67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVS-GLKWVD-E---VIANAPYAIT 141 (366)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~-~~~~VD-~---vv~~~p~~~~ 141 (366)
|.++.|+||++|.||.+++++|.+.+|+|++++.+++. .+|..+.++.+||++|++ +++.++ . +++....+..
T Consensus 1 rgl~~G~FdP~H~GHl~ii~~a~~~~D~lii~i~s~~~--~~k~~~p~~~~eR~~mi~~al~~~~~~~~~~vP~~d~~~~ 78 (165)
T TIGR01527 1 RGFYIGRFQPFHLGHLEVIKKIAEEVDELIIGIGSAQE--SHTLENPFTAGERILMITQSLKEVGDLTYYIIPIEDIERN 78 (165)
T ss_pred CeEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCCC--CCCCCCCCCHHHHHHHHHHHHhcCCCceEEEEecCCccHH
Confidence 46899999999999999999999999999999888764 334444556799999994 455553 3 2221112111
Q ss_pred HHHHHHHhhcc--CccEEEEcCCCCCCCCCCchHHHHHhCC-eEEEec---cCCCCCHHHHHHHHHhc
Q 017744 142 EQFMNRLFNEH--KIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIK---RTEGVSSTDIVGRILSS 203 (366)
Q Consensus 142 ~eFl~~ll~~l--~~d~VV~G~D~~fg~~g~~~~~~lk~~g-~~~~v~---r~~~vSST~Ir~rI~~~ 203 (366)
+.+.. .++.+ ++|+|+.|+.. ....+++.| ++..++ |+ ++|||+||++|.++
T Consensus 79 ~~w~~-~v~~~~p~~D~vf~~~~~--------~~~~f~e~g~~v~~~p~~~r~-~~S~T~IR~~i~~~ 136 (165)
T TIGR01527 79 SIWVS-YVESMTPPFDVVYSNNPL--------VRRLFKEAGYEVKRPPMFNRK-EYSGTEIRRRMLNG 136 (165)
T ss_pred HHHHH-HHHHhCCCCCEEEECCHH--------HHHHHHHcCCEEEECCCcCCC-cccHHHHHHHHHcC
Confidence 11211 11111 78999999432 245566666 445555 55 89999999999865
No 48
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=99.54 E-value=1.4e-14 Score=141.50 Aligned_cols=125 Identities=25% Similarity=0.364 Sum_probs=90.1
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcC--ccccEEEe---cCCcccc
Q 017744 67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL--KWVDEVIA---NAPYAIT 141 (366)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~--~~VD~vv~---~~p~~~~ 141 (366)
+|++.||||.+|.||..+|++|+++||+|+|||++|+.+.++|..| .++++|+++++++ +.++.+.. ..||..+
T Consensus 2 ~V~vgGTFD~lH~GH~~lL~~A~~~gd~LiVgvt~D~~~~~~k~~~-~~~e~R~~~v~~fl~~~~~~~~i~~i~D~~Gpt 80 (322)
T PRK01170 2 ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYVRKNKVYP-IPYEDRKRKLENFIKKFTNKFRIRPIDDRYGNT 80 (322)
T ss_pred EEEEccccccCChHHHHHHHHHHHcCCEEEEEEccHHHHHhcCCCC-CCHHHHHHHHHHHHHhcCCcEEEEecCCCCCCC
Confidence 6999999999999999999999999999999999999887666667 9999999999984 45554322 3344322
Q ss_pred HHHHHHHhhccCccEEEEcCCCCCCCCCCchHHHHHhCC----eEEEecc-----CCCCCHHHHHHHHH
Q 017744 142 EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----RYKQIKR-----TEGVSSTDIVGRIL 201 (366)
Q Consensus 142 ~eFl~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~g----~~~~v~r-----~~~vSST~Ir~rI~ 201 (366)
+...++|++|+|.+...+.. ..-+..++.| ++..++. ...+|||+||+.-.
T Consensus 81 -------~~~~~~d~IVVS~ET~~~~~--~IN~~R~e~Gl~pleIv~I~~v~~~d~~~iSSTrIr~~ei 140 (322)
T PRK01170 81 -------LYEEDYEIIVVSPETYQRAL--KINEIRIKNGLPPLKIVRVPYVLAEDLFPISSTRIINGEI 140 (322)
T ss_pred -------cccCCCCEEEEeccccccHH--HHHHHHHHCCCCceEEEEEEeEEcCCCCcccHHHHhhhhc
Confidence 12357999999999866532 1122333444 2333332 23589999997643
No 49
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.51 E-value=1.1e-13 Score=122.29 Aligned_cols=127 Identities=21% Similarity=0.227 Sum_probs=85.3
Q ss_pred EEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhc-CccccEEEecCCccccHHHHH
Q 017744 68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPYAITEQFMN 146 (366)
Q Consensus 68 V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~-~~~VD~vv~~~p~~~~~eFl~ 146 (366)
++++|+||++|.||..++++|.+.+|++++++++++ .| .++.+.++|++|++. ++.++.+.+..-.+++.+++
T Consensus 2 ~i~gGsFdP~H~GHl~l~~~a~~~~d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~~~v~~~es~t~~~l- 75 (153)
T cd02163 2 AVYPGSFDPITNGHLDIIERASKLFDEVIVAVAVNP----SK-KPLFSLEERVELIREATKHLPNVEVDGFDGLLVDFA- 75 (153)
T ss_pred EEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEecCCcchHHHHH-
Confidence 689999999999999999999999999999998654 24 478999999999997 66777776532112444554
Q ss_pred HHhhccCccEEEEcCCCCCCCCCCchHHHHHhCC-----eEEEeccC--CCCCHHHHHHHHHhc
Q 017744 147 RLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-----RYKQIKRT--EGVSSTDIVGRILSS 203 (366)
Q Consensus 147 ~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~g-----~~~~v~r~--~~vSST~Ir~rI~~~ 203 (366)
+.++.+++++|-|-....+..-......+.+ .+..+... ..+|||.||+++..+
T Consensus 76 ---~~l~~~~~i~G~d~~~~~e~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~~~~g 136 (153)
T cd02163 76 ---RKHGANVIVRGLRAVSDFEYEFQMAGMNRKLAPEIETVFLMASPEYSFISSSLVKEIARFG 136 (153)
T ss_pred ---HHcCCCEEEECCcchhhHHHHHHHHHhCCCCCCCCcEEEEeCCCccceecHHHHHHHHHcC
Confidence 5678899999955321111100000111111 12222222 259999999999865
No 50
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.51 E-value=3.8e-14 Score=106.83 Aligned_cols=65 Identities=43% Similarity=0.719 Sum_probs=59.1
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCCCCc
Q 017744 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDE 324 (366)
Q Consensus 258 ~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~ 324 (366)
++++.|+|||+|.||+.++++|++++|.++|+|.+|+..+..|. .|+++.++|.+++++|.+++.
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~~~vv~i~~~~~~~~~~~--~~~~~~~~R~~~~~~~~~~~~ 65 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKG--EPVFSLEERLEMLKALKYVDE 65 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECchHhccccCC--CCCCCHHHHHHHHHHhccccC
Confidence 57999999999999999999999999999999999888877663 399999999999999988764
No 51
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.49 E-value=1.5e-13 Score=121.40 Aligned_cols=85 Identities=21% Similarity=0.383 Sum_probs=77.2
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHh-cCCCCcEEEcCCCCchHH
Q 017744 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVTKD 336 (366)
Q Consensus 258 ~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~-~~~Vd~Vvi~~~~~~~~d 336 (366)
++++.|||||+|.||+.++++|++.+|.|+|+++++. .| .|.++.++|.+|++. ++.++.+.+...+..+.+
T Consensus 1 i~i~gGsFdP~H~GHl~l~~~a~~~~d~v~v~~~~~~----~k---~~~~~~~~R~~ml~~a~~~~~~~~v~~~es~t~~ 73 (153)
T cd02163 1 IAVYPGSFDPITNGHLDIIERASKLFDEVIVAVAVNP----SK---KPLFSLEERVELIREATKHLPNVEVDGFDGLLVD 73 (153)
T ss_pred CEEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CC---CCCCCHHHHHHHHHHHHcCCCCEEecCCcchHHH
Confidence 4789999999999999999999999999999998763 34 588999999999997 699999999887778999
Q ss_pred HHHHcCCcEEEEC
Q 017744 337 MITTFNICLVVHG 349 (366)
Q Consensus 337 ~i~~~~~~~vv~G 349 (366)
+++.++.+++++|
T Consensus 74 ~l~~l~~~~~i~G 86 (153)
T cd02163 74 FARKHGANVIVRG 86 (153)
T ss_pred HHHHcCCCEEEEC
Confidence 9999999999999
No 52
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=99.49 E-value=3.8e-14 Score=138.53 Aligned_cols=93 Identities=20% Similarity=0.394 Sum_probs=78.3
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc--CCCCcEEEc---CCCC
Q 017744 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC--RYVDEVIIG---APWE 332 (366)
Q Consensus 258 ~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~--~~Vd~Vvi~---~~~~ 332 (366)
+|++.||||+||.||+.+|++|+.+||+|||||++|+.+.++|. +| .|+++|+++++++ ++++.+.+. ++++
T Consensus 2 ~V~vgGTFD~lH~GH~~lL~~A~~~gd~LiVgvt~D~~~~~~k~--~~-~~~e~R~~~v~~fl~~~~~~~~i~~i~D~~G 78 (322)
T PRK01170 2 ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYVRKNKV--YP-IPYEDRKRKLENFIKKFTNKFRIRPIDDRYG 78 (322)
T ss_pred EEEEccccccCChHHHHHHHHHHHcCCEEEEEEccHHHHHhcCC--CC-CCHHHHHHHHHHHHHhcCCcEEEEecCCCCC
Confidence 69999999999999999999999999999999999999876663 57 9999999999995 777775554 4455
Q ss_pred chHHHHHHcCCcEEEECCCCCCCC
Q 017744 333 VTKDMITTFNICLVVHGTVSETNT 356 (366)
Q Consensus 333 ~~~d~i~~~~~~~vv~G~~~~~~~ 356 (366)
.+ +...++|++|-|.+...+.
T Consensus 79 pt---~~~~~~d~IVVS~ET~~~~ 99 (322)
T PRK01170 79 NT---LYEEDYEIIVVSPETYQRA 99 (322)
T ss_pred CC---cccCCCCEEEEeccccccH
Confidence 33 4567899999999886553
No 53
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.45 E-value=1.5e-13 Score=103.51 Aligned_cols=64 Identities=52% Similarity=0.768 Sum_probs=57.2
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCcccc
Q 017744 67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVD 130 (366)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD 130 (366)
++++.|+||++|.||+.++++|+++++.+++++.+++...+.|..++++.++|.++++.+.+++
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~~~vv~i~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 64 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKGEPVFSLEERLEMLKALKYVD 64 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECchHhccccCCCCCCCHHHHHHHHHHhcccc
Confidence 4799999999999999999999999999999999887766655559999999999999987765
No 54
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.45 E-value=9.3e-14 Score=119.73 Aligned_cols=62 Identities=40% Similarity=0.535 Sum_probs=46.9
Q ss_pred EEecccCcCCHHHHHHHHHHHHhCCe-eEEEEccchhhhhcCCCCCCcHHHHHHHHhcCccccE
Q 017744 69 YMDGCFDLMHYGHANALRQAKALGDE-LVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE 131 (366)
Q Consensus 69 ~~~G~FD~lH~GH~~lL~qAk~lgd~-LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~ 131 (366)
+++|+||++|.||..++++|++.++. +++++.++....+. ++++++.++|++|++.+...+.
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k~-~~~~~~~~~R~~ml~~~~~~~~ 63 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHKD-KKPIFSFEERLEMLRAAFKDDP 63 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHST-TSSSSTHHHHHHHHHHHHTTCT
T ss_pred CeeeEcCcccHHHHHHHHHHHHhcccccccccccccccccc-ccccCcHHHHHHHHHHHHhhcC
Confidence 57999999999999999999999986 57777777654322 2489999999999998766665
No 55
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.45 E-value=8.6e-13 Score=117.77 Aligned_cols=126 Identities=21% Similarity=0.261 Sum_probs=84.2
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHh-cCcccc------EEEecCCcc
Q 017744 67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVS-GLKWVD------EVIANAPYA 139 (366)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~-~~~~VD------~vv~~~p~~ 139 (366)
+.+++|+||++|.||..++++|.+.+|+|++++.++... .+....++.+||++|++ .+...| .++.-..+.
T Consensus 1 ~~v~~G~FdP~H~GHl~~i~~a~~~~d~l~v~v~s~~~~--~~~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d~~ 78 (163)
T cd02166 1 RALFIGRFQPFHLGHLKVIKWILEEVDELIIGIGSAQES--HTLENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPDIE 78 (163)
T ss_pred CeEEeeccCCCCHHHHHHHHHHHHHCCEEEEEecCCCCC--CCCCCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCCCC
Confidence 368999999999999999999999999999998776532 23344578899999999 445554 233322122
Q ss_pred ccHHHHHHHhhcc-CccEEEEcCCCCCCCCCCchHHHHHhCC-eEEEeccC--CCCCHHHHHHHHHh
Q 017744 140 ITEQFMNRLFNEH-KIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKRT--EGVSSTDIVGRILS 202 (366)
Q Consensus 140 ~~~eFl~~ll~~l-~~d~VV~G~D~~fg~~g~~~~~~lk~~g-~~~~v~r~--~~vSST~Ir~rI~~ 202 (366)
..+.+...+.... ++|+++.|++|. -..+++.| .+..+++. +++|+|.||++|.+
T Consensus 79 ~~~~w~~~v~~~vp~~div~~g~~~~--------~~~f~~~g~~v~~~p~~~~~~~s~t~iR~~~~~ 137 (163)
T cd02166 79 RNSLWVSYVESLTPPFDVVYSGNPLV--------ARLFKEAGYEVRRPPMFNREEYSGTEIRRLMLG 137 (163)
T ss_pred chHHHHHHHHHHCCCCCEEEECchHH--------HHhhhhcCCeEecCCcccCCCCCHHHHHHHHHc
Confidence 3333433322222 578999996542 12333444 34466663 47999999999874
No 56
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.44 E-value=3.5e-13 Score=119.25 Aligned_cols=85 Identities=22% Similarity=0.393 Sum_probs=75.0
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc-CCCCcEEEcCCCCchHH
Q 017744 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVIIGAPWEVTKD 336 (366)
Q Consensus 258 ~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd~Vvi~~~~~~~~d 336 (366)
++++.|||||+|.||+.++++|++.+|+|+++++.+ ..| .+..+.++|++|++.+ +..+.+.+...+..+.|
T Consensus 1 i~l~gGsFdP~H~GHl~l~~~a~~~~d~v~~~~~~~----p~k---~~~~~~~~R~~m~~~a~~~~~~~~v~~~e~yt~d 73 (155)
T TIGR01510 1 IALYPGSFDPVTNGHLDIIKRAAALFDEVIVAVAKN----PSK---KPLFSLEERVELIKDATKHLPNVRVDVFDGLLVD 73 (155)
T ss_pred CEEEEeecCCCcHHHHHHHHHHHHhCCEEEEEEcCC----CCC---CCCcCHHHHHHHHHHHHhhCCCeEEcCccchHHH
Confidence 478999999999999999999999999999999744 334 4788999999999876 66677888777789999
Q ss_pred HHHHcCCcEEEEC
Q 017744 337 MITTFNICLVVHG 349 (366)
Q Consensus 337 ~i~~~~~~~vv~G 349 (366)
+++.++.+++++|
T Consensus 74 t~~~l~~~~~i~G 86 (155)
T TIGR01510 74 YAKELGATFIVRG 86 (155)
T ss_pred HHHHcCCCEEEec
Confidence 9999999999999
No 57
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.43 E-value=1.1e-12 Score=116.10 Aligned_cols=119 Identities=22% Similarity=0.304 Sum_probs=79.7
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCcccc----EEEecCCccccH
Q 017744 67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVD----EVIANAPYAITE 142 (366)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD----~vv~~~p~~~~~ 142 (366)
++++.|+||++|.||+.++++|++.+|+|++++..+ +.| .+..+.++|++|++.+ ..| +|.. .+ +++.
T Consensus 1 i~l~gGsFdP~H~GHl~l~~~a~~~~d~v~~~~~~~----p~k-~~~~~~~~R~~m~~~a-~~~~~~~~v~~-~e-~yt~ 72 (155)
T TIGR01510 1 IALYPGSFDPVTNGHLDIIKRAAALFDEVIVAVAKN----PSK-KPLFSLEERVELIKDA-TKHLPNVRVDV-FD-GLLV 72 (155)
T ss_pred CEEEEeecCCCcHHHHHHHHHHHHhCCEEEEEEcCC----CCC-CCCcCHHHHHHHHHHH-HhhCCCeEEcC-cc-chHH
Confidence 368999999999999999999999999999998743 334 4778999999999975 233 2222 11 2344
Q ss_pred HHHHHHhhccCccEEEEcCCCCCCCCCCchHHHHHh---CC-------eEEEeccCC---CCCHHHHHHHHHhc
Q 017744 143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK---VG-------RYKQIKRTE---GVSSTDIVGRILSS 203 (366)
Q Consensus 143 eFl~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~---~g-------~~~~v~r~~---~vSST~Ir~rI~~~ 203 (366)
+++ +.++.++++.|-|-. .+++.+.+ .. ....+.... .+|||.||+++..+
T Consensus 73 dt~----~~l~~~~~i~G~~~~------~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~i~~g 136 (155)
T TIGR01510 73 DYA----KELGATFIVRGLRAA------TDFEYELQMALMNKHLAPEIETVFLMASPEYAFVSSSLVKEIASFG 136 (155)
T ss_pred HHH----HHcCCCEEEecCcch------hhHHHHHHHHhhCcccccCCcEEEEeCCcchhhccHHHHHHHHHcC
Confidence 444 457788999984421 11221111 11 111121222 69999999999865
No 58
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.42 E-value=1.3e-12 Score=120.00 Aligned_cols=137 Identities=24% Similarity=0.214 Sum_probs=103.7
Q ss_pred CCeEEEEecccCcCCHHHHHHHHHHHHhC--CeeEEEEccchhhhhcCC-CCCCcHHHHHHHHhc-Ccc------ccEEE
Q 017744 64 KRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKW------VDEVI 133 (366)
Q Consensus 64 ~~~~V~~~G~FD~lH~GH~~lL~qAk~lg--d~LvVgv~sd~~i~~~K~-~pi~t~eER~~ll~~-~~~------VD~vv 133 (366)
.+++++++|+||++|.||..+.++|.+.- |+|++.++..+ ++|. +...+.++|++|++- ++. ++..+
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~---p~k~~~~~a~~~~R~~Ml~la~~~~~~~~v~~~e~ 78 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVP---PHKKKKELASAEHRLAMLELAIEDNPRFEVSDREI 78 (197)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCC---CCCCCccCCCHHHHHHHHHHHHhcCCCcceeHHHH
Confidence 35689999999999999999999999975 66666655543 4455 679999999999983 222 22223
Q ss_pred ecCCccccHHHHHHHhhccCcc---EEEEcCCCCCCCCCCchHHHHHhCCeEEEeccCC---------------------
Q 017744 134 ANAPYAITEQFMNRLFNEHKID---YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTE--------------------- 189 (366)
Q Consensus 134 ~~~p~~~~~eFl~~ll~~l~~d---~VV~G~D~~fg~~g~~~~~~lk~~g~~~~v~r~~--------------------- 189 (366)
.....++|.+.++.+.+++++| +.++|.|---.-..+-.++.+-+...+..++|..
T Consensus 79 ~r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~~l~~W~~~~ell~~~~~vv~~Rp~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
T COG1057 79 KRGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLASLPKWYDWDELLKLVTFVVAPRPGYGELELSLLSSGGAIILLDLP 158 (197)
T ss_pred HcCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhhhhhhhhhHHHHHHhCCEEEEecCCchhhhhhhhcCCceEEEccCc
Confidence 3445677788888776688888 5899999765556677788888888877766621
Q ss_pred --CCCHHHHHHHHHhc
Q 017744 190 --GVSSTDIVGRILSS 203 (366)
Q Consensus 190 --~vSST~Ir~rI~~~ 203 (366)
.||||.||+++..+
T Consensus 159 ~~~ISSt~IR~~~~~~ 174 (197)
T COG1057 159 RLDISSTEIRERIRRG 174 (197)
T ss_pred cccCchHHHHHHHhCC
Confidence 49999999999865
No 59
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.41 E-value=2e-12 Score=119.07 Aligned_cols=136 Identities=21% Similarity=0.169 Sum_probs=91.1
Q ss_pred CCeEEEEecccCcCCHHHHHHHHHHHHhC--CeeEEEEccchhhhhcCC-CCCCcHHHHHHHHhcC-ccccEEEe-----
Q 017744 64 KRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSGL-KWVDEVIA----- 134 (366)
Q Consensus 64 ~~~~V~~~G~FD~lH~GH~~lL~qAk~lg--d~LvVgv~sd~~i~~~K~-~pi~t~eER~~ll~~~-~~VD~vv~----- 134 (366)
.+++++++|+||++|.||+.++++|++.. +.+++.+++.+ ..|. +.+.+.++|++|++.. +..+.+..
T Consensus 3 ~~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~---~~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~ 79 (203)
T PRK00071 3 MKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGP---PHKPQKPLAPLEHRLAMLELAIADNPRFSVSDIEL 79 (203)
T ss_pred CcEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCC---CCCCCCCCCCHHHHHHHHHHHhcCCCceEEeHHHH
Confidence 34688999999999999999999999876 77777776654 2343 4688999999999853 33333332
Q ss_pred -cCCccccHHHHHHHhhccCcc---EEEEcCCCCCCCCCCchHHHHHhCCeEEEecc-----------------------
Q 017744 135 -NAPYAITEQFMNRLFNEHKID---YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKR----------------------- 187 (366)
Q Consensus 135 -~~p~~~~~eFl~~ll~~l~~d---~VV~G~D~~fg~~g~~~~~~lk~~g~~~~v~r----------------------- 187 (366)
....++|.+.++.+.+.+ ++ ++++|.|.-..-..+..++.+-+...+.+++|
T Consensus 80 ~~~~~syT~~tl~~l~~~~-p~~~~~fiiG~D~l~~l~~W~~~~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~~i 158 (203)
T PRK00071 80 ERPGPSYTIDTLRELRARY-PDVELVFIIGADALAQLPRWKRWEEILDLVHFVVVPRPGYPLEALALPALQQLLEAAGAI 158 (203)
T ss_pred hCCCCCCHHHHHHHHHHHC-CCCcEEEEEcHHHhhhcccccCHHHHHHhCcEEEEeCCCCCccccchhHHHHhhccCCCE
Confidence 123455667776665544 44 89999985433334444544444444433333
Q ss_pred ------CCCCCHHHHHHHHHhc
Q 017744 188 ------TEGVSSTDIVGRILSS 203 (366)
Q Consensus 188 ------~~~vSST~Ir~rI~~~ 203 (366)
...||||+||+++.++
T Consensus 159 ~~~~~~~~~ISST~IR~~l~~g 180 (203)
T PRK00071 159 TLLDVPLLAISSTAIRERIKEG 180 (203)
T ss_pred EEEeCCCCccCHHHHHHHHHcC
Confidence 1359999999999854
No 60
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=99.41 E-value=4.3e-13 Score=117.35 Aligned_cols=121 Identities=28% Similarity=0.354 Sum_probs=80.6
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHhC-CeeEEEEccchhhhhcCC--CCCCcHHHHHHHHhcC----c-ccc--EEEecC
Q 017744 67 RVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKG--PPVLSMEERLALVSGL----K-WVD--EVIANA 136 (366)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qAk~lg-d~LvVgv~sd~~i~~~K~--~pi~t~eER~~ll~~~----~-~VD--~vv~~~ 136 (366)
+|++.|+||++|.||+.+|++|.+++ +++++|+++|+... .|. .++++.++|+++++.+ . .+. .+-+..
T Consensus 1 ~v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~~~-~k~~~~~i~s~e~R~~~l~~~l~~~~~~~~~~i~~i~d 79 (143)
T cd02164 1 KVAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELLK-NKSLKELIEPYEERIANLHEFLVDLKPTLKYEIVPIDD 79 (143)
T ss_pred CEEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchhcc-cCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccC
Confidence 37899999999999999999999998 78999999988443 343 3689999999999963 1 011 222344
Q ss_pred CccccHHHHHHHhhccCccEEEEcCCCCCCCCCCchHHHHH-hCC----eEEEec------cCCCCCHHHHHH
Q 017744 137 PYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAK-KVG----RYKQIK------RTEGVSSTDIVG 198 (366)
Q Consensus 137 p~~~~~eFl~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk-~~g----~~~~v~------r~~~vSST~Ir~ 198 (366)
||..+.. .-..|++|+...-..|.. ..+..+ +.| ++..++ ....+|||+||+
T Consensus 80 ~~Gpt~~-------~~~~d~lVVS~ET~~~~~---~iN~~R~~~gl~pl~i~~v~~v~~~~~~~kiSST~iR~ 142 (143)
T cd02164 80 PYGPTGT-------DPDLEAIVVSPETYPGAL---KINRKREENGLSPLEIVVVPLVKADEDGEKISSTRIRR 142 (143)
T ss_pred CCCCccc-------CCCCCEEEEcHHHhhhHH---HHHHHHHHCCCCceeEEEEEeeccCCCCCeecchhhhC
Confidence 4443321 135789999876544422 233333 333 122222 245799999996
No 61
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.39 E-value=1.8e-12 Score=110.87 Aligned_cols=97 Identities=24% Similarity=0.201 Sum_probs=78.7
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcC-CEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCC-CCcEEEcCCCCc--
Q 017744 258 VVYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRY-VDEVIIGAPWEV-- 333 (366)
Q Consensus 258 ~v~~~GsFD~~h~GHi~~L~~A~~~g-d~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~-Vd~Vvi~~~~~~-- 333 (366)
++++.|+|||+|.||+.++++|++++ |.++|.+.+|+.... + +.++++.++|+++++++.. ++.|++......
T Consensus 1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~~-~--~~~~~~~~~R~~~l~~~~~~~~~v~~~~~~~~~~ 77 (143)
T cd02039 1 VGIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKK-R--NKDPFSLHERVEMLKEILKDRLKVVPVDFPEVKI 77 (143)
T ss_pred CeEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhhc-c--cccCCCHHHHHHHHHHhccCCcEEEEEecChhhc
Confidence 47899999999999999999999999 999999999865332 1 2589999999999999975 778877543221
Q ss_pred ------hHHHHHHcCCcEEEECCCCCCCCc
Q 017744 334 ------TKDMITTFNICLVVHGTVSETNTP 357 (366)
Q Consensus 334 ------~~d~i~~~~~~~vv~G~~~~~~~~ 357 (366)
....+..+++++++.|.|+..+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~v~G~d~~~~~~ 107 (143)
T cd02039 78 LLAVVFILKILLKVGPDKVVVGEDFAFGKN 107 (143)
T ss_pred cCHHHHHHHHHHHcCCcEEEECCccccCCc
Confidence 124667789999999999987653
No 62
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.39 E-value=4.5e-13 Score=115.42 Aligned_cols=91 Identities=30% Similarity=0.477 Sum_probs=73.1
Q ss_pred EEcCccccCChHHHHHHHHHHhcCCE-EEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCCCCc--------------
Q 017744 260 YIDGAFDLFHAGHVEILKKARQLGDF-LLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDE-------------- 324 (366)
Q Consensus 260 ~~~GsFD~~h~GHi~~L~~A~~~gd~-LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~-------------- 324 (366)
+++|||||+|.||+.+|++|++++|. +|++|.+|.... |.+ +++++.++|+++++.+...+.
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~--k~~-~~~~~~~~R~~ml~~~~~~~~~i~v~~~e~~~~~~ 77 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPH--KDK-KPIFSFEERLEMLRAAFKDDPNIEVDDWELEQDKK 77 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCH--STT-SSSSTHHHHHHHHHHHHTTCTTEEEEEEHHHSSHH
T ss_pred CeeeEcCcccHHHHHHHHHHHHhcccccccccccccccc--ccc-cccCcHHHHHHHHHHHHhhcCCccccchhHHhHhh
Confidence 58999999999999999999999997 688888886543 332 489999999999999866665
Q ss_pred --------EEEcCC-------CCchHHHHHHcCCcEEEECCCCC
Q 017744 325 --------VIIGAP-------WEVTKDMITTFNICLVVHGTVSE 353 (366)
Q Consensus 325 --------Vvi~~~-------~~~~~d~i~~~~~~~vv~G~~~~ 353 (366)
++++++ |....++++..++.++.|+.++.
T Consensus 78 ~~~~~~~~~v~g~D~~~~~~~~~~~~~~~~~~~~~v~~r~~~~~ 121 (157)
T PF01467_consen 78 KYPDVKIYFVIGADNLRNFPKWRDWQEILKEVNIIVVSRGGDDP 121 (157)
T ss_dssp HSTSSCEEEEEECTHHEEEEESTTHHHHHHHHHEEEEEHHHTTT
T ss_pred hccccccceeccCCceeeecCCCcHHHHHHhCCEEEEEcCCCCc
Confidence 788877 77788999999999999996664
No 63
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.37 E-value=5.6e-12 Score=119.44 Aligned_cols=117 Identities=21% Similarity=0.171 Sum_probs=79.1
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHhC--CeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcC-cc----------ccE
Q 017744 65 RVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KW----------VDE 131 (366)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qAk~lg--d~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~-~~----------VD~ 131 (366)
+++.+.+|+||++|.||..++++|.+.. |++++.+..++ .+| ....+.++|++|++.. +. .|.
T Consensus 22 ~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~p---p~K-~~~~~~~~Rl~M~~lAi~~~~~~~~~~~v~~~ 97 (243)
T PRK06973 22 RRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQP---WQK-ADVSAAEHRLAMTRAAAASLVLPGVTVRVATD 97 (243)
T ss_pred ceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcC---CCC-CCCCCHHHHHHHHHHHHHhccCCCceEEEeHh
Confidence 4578999999999999999999999875 77888776643 345 5678999999999842 11 112
Q ss_pred EEecCCccccHHHHHHHhhccCcc---EEEEcCCCCCCCCCCchHHHHHhCCeEEEe
Q 017744 132 VIANAPYAITEQFMNRLFNEHKID---YIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185 (366)
Q Consensus 132 vv~~~p~~~~~eFl~~ll~~l~~d---~VV~G~D~~fg~~g~~~~~~lk~~g~~~~v 185 (366)
.+.....++|.+.++.+-+++.++ ++++|.|.-..-..+..++.+-+...+.++
T Consensus 98 Ei~~~g~syTidTL~~l~~~~~p~~~~~fiiG~D~l~~l~~W~~~~~L~~~~~lvV~ 154 (243)
T PRK06973 98 EIEHAGPTYTVDTLARWRERIGPDASLALLIGADQLVRLDTWRDWRRLFDYAHLCAA 154 (243)
T ss_pred hhhCCCCCcHHHHHHHHHHHcCCCCCEEEEEchhhHhhcCCcccHHHHHHhCCEEEE
Confidence 222223456667787776667455 799999865444445555555444444333
No 64
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=99.36 E-value=4.3e-12 Score=115.74 Aligned_cols=133 Identities=20% Similarity=0.173 Sum_probs=91.6
Q ss_pred EEEecccCcCCHHHHHHHHHHHHhC--CeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCc-cccEEEe------cCCc
Q 017744 68 VYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK-WVDEVIA------NAPY 138 (366)
Q Consensus 68 V~~~G~FD~lH~GH~~lL~qAk~lg--d~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~-~VD~vv~------~~p~ 138 (366)
++++|+||++|.||..++++|++.+ |++.+.+..++ ..|+....+.++|++|++.+. ....+.. ....
T Consensus 2 ~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~---~~k~~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~~~~ 78 (192)
T cd02165 2 ALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANP---PHKPPKPASFEHRLEMLKLAIEDNPKFEVSDIEIKRDGP 78 (192)
T ss_pred eEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCC---CCCCCCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhCCCC
Confidence 6899999999999999999999998 88888776543 234457889999999998532 2222322 1223
Q ss_pred cccHHHHHHHhhccC-cc-EEEEcCCCCCCCCCCchHHHHHhCCeEEEeccC--------------------------CC
Q 017744 139 AITEQFMNRLFNEHK-ID-YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT--------------------------EG 190 (366)
Q Consensus 139 ~~~~eFl~~ll~~l~-~d-~VV~G~D~~fg~~g~~~~~~lk~~g~~~~v~r~--------------------------~~ 190 (366)
++|.+.++.+.+.+. .+ ++++|.|--..-..+..++.+.+...+.+++|. ..
T Consensus 79 ~~t~~tl~~l~~~~p~~~~~~liG~D~l~~~~~W~~~~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (192)
T cd02165 79 SYTIDTLEELRERYPNAELYFIIGSDNLIRLPKWYDWEELLSLVHLVVAPRPGYPIEDASLEKLLLPGGRIILLDNPLLN 158 (192)
T ss_pred CCHHHHHHHHHHhccCCCEEEEEcHHHhhhcccccCHHHHHHhCcEEEEeCCCCCcccchhhhhccCCCcEEEecCCccc
Confidence 456677766655552 33 888899864444455555655555555544441 25
Q ss_pred CCHHHHHHHHHhc
Q 017744 191 VSSTDIVGRILSS 203 (366)
Q Consensus 191 vSST~Ir~rI~~~ 203 (366)
||||+||+++.++
T Consensus 159 iSST~IR~~~~~g 171 (192)
T cd02165 159 ISSTEIRERLKNG 171 (192)
T ss_pred cCHHHHHHHHHcC
Confidence 9999999999855
No 65
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=99.31 E-value=2e-11 Score=111.60 Aligned_cols=131 Identities=21% Similarity=0.205 Sum_probs=85.8
Q ss_pred EecccCcCCHHHHHHHHHHHHhC--CeeEEEEccchhhhhcCC-CCCCcHHHHHHHHhc-CccccEEEe------cCCcc
Q 017744 70 MDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVDEVIA------NAPYA 139 (366)
Q Consensus 70 ~~G~FD~lH~GH~~lL~qAk~lg--d~LvVgv~sd~~i~~~K~-~pi~t~eER~~ll~~-~~~VD~vv~------~~p~~ 139 (366)
.+|+||++|.||..++++|.+.. |++.+.+...+ +.|. +...+.++|++|++. +...+.+.+ ....+
T Consensus 2 ~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~---p~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~s 78 (193)
T TIGR00482 2 FGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANP---PHKKTYEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGPS 78 (193)
T ss_pred ccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCC---CCCCCCCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCCC
Confidence 58999999999999999999975 67777766554 3344 455799999999983 333333322 12245
Q ss_pred ccHHHHHHHhhcc-Ccc-EEEEcCCCCCCCCCCchHHHHHhCCeEEEeccC----------------------------C
Q 017744 140 ITEQFMNRLFNEH-KID-YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT----------------------------E 189 (366)
Q Consensus 140 ~~~eFl~~ll~~l-~~d-~VV~G~D~~fg~~g~~~~~~lk~~g~~~~v~r~----------------------------~ 189 (366)
+|.+.++.+-+++ +.+ ++++|.|--..-..+..++.+-+...+.+++|. .
T Consensus 79 yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 158 (193)
T TIGR00482 79 YTIDTLKHLKKKYPDVELYFIIGADALRSFPLWKDWQELLELVHLVIVPRPGYTLDKALLEKAILRMHHGNLTLLHNPRV 158 (193)
T ss_pred CHHHHHHHHHHHCCCCeEEEEEcHHHhhhhccccCHHHHHHhCcEEEEeCCCCCcchhhhHHHHhcccCCcEEEEcCCcc
Confidence 5667777665555 223 788999854333344445544444444433331 2
Q ss_pred CCCHHHHHHHHHhc
Q 017744 190 GVSSTDIVGRILSS 203 (366)
Q Consensus 190 ~vSST~Ir~rI~~~ 203 (366)
.||||+||+++.++
T Consensus 159 ~iSST~IR~~l~~g 172 (193)
T TIGR00482 159 PISSTEIRQRIRQG 172 (193)
T ss_pred ccCHHHHHHHHHcC
Confidence 59999999999754
No 66
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.31 E-value=1.2e-11 Score=110.61 Aligned_cols=87 Identities=24% Similarity=0.277 Sum_probs=66.2
Q ss_pred EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHH-HhcCCCC-c---EEEcCCCCc
Q 017744 259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVD-E---VIIGAPWEV 333 (366)
Q Consensus 259 v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v-~~~~~Vd-~---Vvi~~~~~~ 333 (366)
+++.|+|||||.||++++++|++.+|+|+|+|.+++. ..|.+ +.++.+||.+|+ ++++.++ . ++... ...
T Consensus 2 gl~~G~FdP~H~GHl~ii~~a~~~~D~lii~i~s~~~--~~k~~--~p~~~~eR~~mi~~al~~~~~~~~~~vP~~-d~~ 76 (165)
T TIGR01527 2 GFYIGRFQPFHLGHLEVIKKIAEEVDELIIGIGSAQE--SHTLE--NPFTAGERILMITQSLKEVGDLTYYIIPIE-DIE 76 (165)
T ss_pred eEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCCC--CCCCC--CCCCHHHHHHHHHHHHhcCCCceEEEEecC-Ccc
Confidence 6899999999999999999999999999999998864 34443 445779999999 5567774 3 22222 223
Q ss_pred hHHHHHHc------CCcEEEECC
Q 017744 334 TKDMITTF------NICLVVHGT 350 (366)
Q Consensus 334 ~~d~i~~~------~~~~vv~G~ 350 (366)
..+.+.++ ++|+++.|+
T Consensus 77 ~~~~w~~~v~~~~p~~D~vf~~~ 99 (165)
T TIGR01527 77 RNSIWVSYVESMTPPFDVVYSNN 99 (165)
T ss_pred HHHHHHHHHHHhCCCCCEEEECC
Confidence 44556666 889999994
No 67
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.30 E-value=1.5e-11 Score=110.89 Aligned_cols=133 Identities=17% Similarity=0.100 Sum_probs=90.1
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcC-ccc--cEEEe-c------
Q 017744 66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWV--DEVIA-N------ 135 (366)
Q Consensus 66 ~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~-~~V--D~vv~-~------ 135 (366)
++++.+|+||++|.||..+++++ +..|++.+.+.... +.+ ++..+.++|++|++.+ +.. ..+.+ +
T Consensus 3 ~i~ifGGSFDP~H~GHl~ia~~~-~~~d~v~~vP~~~~---~~~-k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~~~~ 77 (174)
T PRK08887 3 KIAVFGSAFNPPSLGHKSVIESL-SHFDLVLLVPSIAH---AWG-KTMLDYETRCQLVDAFIQDLGLSNVQRSDIEQELY 77 (174)
T ss_pred eEEEeCCCCCCCCHHHHHHHHHh-hcCCEEEEEECCCC---ccc-CCCCCHHHHHHHHHHHHhccCCCceEEehHHhhhc
Confidence 47899999999999999999996 45688887765421 122 3677999999999853 111 12221 1
Q ss_pred --CCccccHHHHHHHhhccC-cc-EEEEcCCCCCCCCCCchHHHHHhCCeEEEeccCCCCCHHHHHHHHHhc
Q 017744 136 --APYAITEQFMNRLFNEHK-ID-YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS 203 (366)
Q Consensus 136 --~p~~~~~eFl~~ll~~l~-~d-~VV~G~D~~fg~~g~~~~~~lk~~g~~~~v~r~~~vSST~Ir~rI~~~ 203 (366)
....+|.+.+..+.+++. .+ ++++|.|--.....+..++.+.+...+...++...||||.||+++..+
T Consensus 78 ~~~~~~yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~~~~l~~~~~~~~ISST~IR~~l~~g 149 (174)
T PRK08887 78 APDESVTTYALLTRLQELYPEADLTFVIGPDNFLKFAKFYKADEITQRWTVMACPEKVPIRSTDIRNALQNG 149 (174)
T ss_pred cCCCCcchHHHHHHHHHHCCCCeEEEEEccchHHHHHHhCCHHHHHhhCeEEEeCCCCCcCHHHHHHHHHcC
Confidence 222345567766655552 22 677798865444445556676666667777766789999999999854
No 68
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=99.28 E-value=1.5e-11 Score=111.30 Aligned_cols=96 Identities=19% Similarity=0.167 Sum_probs=72.6
Q ss_pred EEEcCccccCChHHHHHHHHHHhcCC---EEEEEEecCchhhc---ccCCCCCCCCHHHHHHHHHhcCCCCcEEEcCCCC
Q 017744 259 VYIDGAFDLFHAGHVEILKKARQLGD---FLLVGIYTDQIVSE---HRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWE 332 (366)
Q Consensus 259 v~~~GsFD~~h~GHi~~L~~A~~~gd---~LiVgV~sD~~v~~---~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~~~~ 332 (366)
|++.|+||++|.||..+|++|+++++ ...|.++-|+.... .+....|+++.++|+++++++. ||.|++..+..
T Consensus 2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~-vd~v~~~~f~~ 80 (180)
T cd02064 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLG-VDYLLVLPFDK 80 (180)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcC-CCEEEEeCCCH
Confidence 78899999999999999999999976 34555555543321 1222368999999999999998 99999865421
Q ss_pred -----chHHHHHH----cCCcEEEECCCCCCC
Q 017744 333 -----VTKDMITT----FNICLVVHGTVSETN 355 (366)
Q Consensus 333 -----~~~d~i~~----~~~~~vv~G~~~~~~ 355 (366)
...+|+++ .+++.+|.|.||.-+
T Consensus 81 ~~~~~s~~~Fi~~il~~~~~~~ivvG~Df~FG 112 (180)
T cd02064 81 EFASLSAEEFVEDLLVKLNAKHVVVGFDFRFG 112 (180)
T ss_pred HHHcCCHHHHHHHHHhhcCCeEEEEccCCCCC
Confidence 34555554 389999999999844
No 69
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=99.27 E-value=1.8e-11 Score=106.53 Aligned_cols=127 Identities=26% Similarity=0.286 Sum_probs=88.7
Q ss_pred CCCeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhc----Ccccc--EEEecC
Q 017744 63 KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG----LKWVD--EVIANA 136 (366)
Q Consensus 63 ~~~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~----~~~VD--~vv~~~ 136 (366)
.+...|.+.|+||.+|.||..||+.|..+|+.+++|++||+.+..+|..++.|++.|++-|.. .+.-. .+-++.
T Consensus 3 ~kfm~vavGGTFd~LH~GHk~LL~~A~~~G~~v~IGlTsDe~~k~~k~~~i~p~~~R~~~l~~fl~~~~~~~~~iv~i~D 82 (158)
T COG1019 3 IKFMKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKKEKIEPYEVRLRNLRNFLESIKADYEEIVPIDD 82 (158)
T ss_pred ccceEEEecccchhhhhhHHHHHHHHHHhCCeEEEEEccHHHHHHhccccCCcHHHHHHHHHHHHHHhcCCcceEEEecC
Confidence 445679999999999999999999999999999999999998877666899999999998874 21111 333566
Q ss_pred CccccHHHHHHHhhccCccEEEEcCCCCCCCCCCchHHHHH-hCC----eEEEecc-----CCCCCHHHHHHH
Q 017744 137 PYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAK-KVG----RYKQIKR-----TEGVSSTDIVGR 199 (366)
Q Consensus 137 p~~~~~eFl~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk-~~g----~~~~v~r-----~~~vSST~Ir~r 199 (366)
||..+.+ .-..|++|+...-.-+ .-..+.++ +.| ++..++. +..+|||+||+-
T Consensus 83 p~G~t~~-------~~~~e~iVVS~ET~~~---Al~IN~~R~~~Gl~pL~I~~i~~v~aedg~~iSSTrIrrg 145 (158)
T COG1019 83 PYGPTVE-------DPDFEAIVVSPETYPG---ALKINEIREKRGLPPLEIIVIDYVLAEDGKPISSTRIRRG 145 (158)
T ss_pred CCCCCCC-------cCceeEEEEccccchh---HHHHHHHHHHCCCCCeEEEEEehhhhhcCCccchhhhhhh
Confidence 7765532 1246888888553322 12233333 233 2333333 347999999954
No 70
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.25 E-value=1.5e-11 Score=111.71 Aligned_cols=129 Identities=15% Similarity=0.140 Sum_probs=81.3
Q ss_pred EEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcC-cc--cc--EEE-ecCCcc-c
Q 017744 68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KW--VD--EVI-ANAPYA-I 140 (366)
Q Consensus 68 V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~-~~--VD--~vv-~~~p~~-~ 140 (366)
.+++|+||++|.||+.++++|.+.+++|+|++.+.+.. +.+ ++.++.+||++|++.+ .. +| .+. ...|-. +
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~~~vii~i~s~~~~-~~~-~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~D~~~ 79 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKAKKVIILIGSARTA-RNI-KNPWTSEEREVMIEAALSDAGADLARVHFRPLRDHLY 79 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHCCeEEEEeCCCCCC-CCC-CCCcCHHHHHHHHHHHHhccCCCcceEEEEecCCCCC
Confidence 57899999999999999999999999999999776432 222 3557999999999974 11 11 222 222211 1
Q ss_pred c-HHHH---HHHhh---ccCccEEEEcCCCCCCCCCCchHH-HHHhCCeEEEeccCCCCCHHHHHHHHHhc
Q 017744 141 T-EQFM---NRLFN---EHKIDYIIHGDDPCLLPDGTDAYA-LAKKVGRYKQIKRTEGVSSTDIVGRILSS 203 (366)
Q Consensus 141 ~-~eFl---~~ll~---~l~~d~VV~G~D~~fg~~g~~~~~-~lk~~g~~~~v~r~~~vSST~Ir~rI~~~ 203 (366)
. +-+. +..+. ..+++++++|.|... ..-|. .+.+.+ +..++..+.+|||.||++|.++
T Consensus 80 ~~~~W~~~v~~~v~~~~~~~~~i~~~g~~kd~----~~~~~~lfpe~~-~~~~p~~~~iSsT~IR~~i~~~ 145 (181)
T cd02168 80 SDNLWLAEVQQQVLEIAGGSASVGLVGHRKDA----SSYYLRSFPQWD-YLEVPNYPDLNATDIRRAYFEG 145 (181)
T ss_pred ChHHHHHHHHHhChHhhCCCCcEEEeCCccCC----CccceeecCCcC-eecCccccccCHHHHHHHHHhc
Confidence 2 2122 11111 235688999977631 11111 111222 3355555689999999999863
No 71
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.23 E-value=7e-11 Score=103.00 Aligned_cols=89 Identities=22% Similarity=0.277 Sum_probs=65.6
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcC-ccccEEEecCC-ccccHH
Q 017744 66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVDEVIANAP-YAITEQ 143 (366)
Q Consensus 66 ~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~-~~VD~vv~~~p-~~~~~e 143 (366)
+++++.|+||++|.||..++++|.+++|+++|++..++ .| +++++.++|+++++.. +....+-.... -.+..+
T Consensus 2 kiai~~GSFDPih~GHl~ii~~A~~~~D~v~v~v~~np----~K-~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~~l~v~ 76 (140)
T PRK13964 2 KIAIYPGSFDPFHKGHLNILKKALKLFDKVYVVVSINP----DK-SNASDLDSRFKNVKNKLKDFKNVEVLINENKLTAE 76 (140)
T ss_pred eEEEEeeeeCCCCHHHHHHHHHHHHhCCEEEEEeccCC----CC-CCCCCHHHHHHHHHHHHcCCCCcEEecCcCCcHHH
Confidence 47899999999999999999999999999999988653 34 4789999999999742 22232222111 123345
Q ss_pred HHHHHhhccCccEEEEcCCC
Q 017744 144 FMNRLFNEHKIDYIIHGDDP 163 (366)
Q Consensus 144 Fl~~ll~~l~~d~VV~G~D~ 163 (366)
|. ++++++++|.|=.-
T Consensus 77 ~~----~~~~a~~ivrGlR~ 92 (140)
T PRK13964 77 IA----KKLGANFLIRSARN 92 (140)
T ss_pred HH----HHCCCeEEEEecCC
Confidence 54 56899999999543
No 72
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.22 E-value=2e-10 Score=103.75 Aligned_cols=127 Identities=20% Similarity=0.309 Sum_probs=81.6
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCc---cc--cEE-EecCC-cc
Q 017744 67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK---WV--DEV-IANAP-YA 139 (366)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~---~V--D~v-v~~~p-~~ 139 (366)
+++++|.||++|.||+.++++|.+.+|+|++++.+... ..+....++.+||++|++..- .+ +.+ +...| ..
T Consensus 2 ~gl~~G~F~P~H~GHl~~i~~a~~~~d~v~v~i~s~~~--~~~~~~p~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~D~~ 79 (174)
T PRK01153 2 RALFIGRFQPFHKGHLEVIKWILEEVDELIIGIGSAQE--SHTLKNPFTAGERILMIRKALEEEGIDLSRYYIIPIPDIE 79 (174)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHhCCEEEEEecCCCC--CCCCCCCCCHHHHHHHHHHHHhcCCCCcceeeEecCCCcc
Confidence 58999999999999999999999999999998865431 122234578899999999531 12 122 22222 22
Q ss_pred ccHHHHHHHhhc-cCccEEEEcCCCCCCCCCCchHHHHHhCC-eEEEec--cCCCCCHHHHHHHHHhc
Q 017744 140 ITEQFMNRLFNE-HKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIK--RTEGVSSTDIVGRILSS 203 (366)
Q Consensus 140 ~~~eFl~~ll~~-l~~d~VV~G~D~~fg~~g~~~~~~lk~~g-~~~~v~--r~~~vSST~Ir~rI~~~ 203 (366)
..+.+...+... ..+|+++.|+.+ .....++.| ++...+ ....+|+|+||++|.++
T Consensus 80 ~~~~w~~~v~~~~~~~d~v~~~~~y--------~~~~f~~~g~~v~~~p~~~~~~iSsT~IR~~i~~g 139 (174)
T PRK01153 80 FNSIWVSHVESYTPPFDVVYTGNPL--------VARLFREAGYEVRQPPMFNREEYSGTEIRRRMIEG 139 (174)
T ss_pred hHHHHHHHHHHhCCCCCEEEECChH--------HHHhchhhCCeEecCCccccCCCCHHHHHHHHHcC
Confidence 333344333222 256899999532 122223444 334444 34579999999999754
No 73
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=99.22 E-value=7.6e-11 Score=116.91 Aligned_cols=134 Identities=21% Similarity=0.118 Sum_probs=94.2
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHh--CCeeEEEEccchhhhhcCC-CCCCcHHHHHHHHhcC-ccccEEE------ec
Q 017744 66 VRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKG-PPVLSMEERLALVSGL-KWVDEVI------AN 135 (366)
Q Consensus 66 ~~V~~~G~FD~lH~GH~~lL~qAk~l--gd~LvVgv~sd~~i~~~K~-~pi~t~eER~~ll~~~-~~VD~vv------~~ 135 (366)
++++.+|+||++|.||..++++|.+. .|++.+.+...+ +.|. .+..+.++|++|++.. +..+.+. ..
T Consensus 2 ~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~---p~K~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~ 78 (342)
T PRK07152 2 KIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYIN---PFKKKQKASNGEHRLNMLKLALKNLPKMEVSDFEIKR 78 (342)
T ss_pred eEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCC---CCCCCCCCCCHHHHHHHHHHHHhhCCCeEEeHHHHhC
Confidence 47899999999999999999999986 378887776543 4454 3455569999999742 2222222 22
Q ss_pred CCccccHHHHHHHhhccCcc---EEEEcCCCCCCCCCCchHHHHHhCCeEEEeccC--------------------CCCC
Q 017744 136 APYAITEQFMNRLFNEHKID---YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT--------------------EGVS 192 (366)
Q Consensus 136 ~p~~~~~eFl~~ll~~l~~d---~VV~G~D~~fg~~g~~~~~~lk~~g~~~~v~r~--------------------~~vS 192 (366)
...++|.+.++.+.+++ |+ ++++|.|.-..-..+..++.+-+...+.+++|. ..||
T Consensus 79 ~~~syt~~tl~~l~~~~-p~~~~~~iiG~D~~~~l~~W~~~~~l~~~~~~iv~~R~g~~~~~~~~~~~i~~~~~~~~~iS 157 (342)
T PRK07152 79 QNVSYTIDTIKYFKKKY-PNDEIYFIIGSDNLEKFKKWKNIEEILKKVQIVVFKRKKNINKKNLKKYNVLLLKNKNLNIS 157 (342)
T ss_pred CCCCcHHHHHHHHHHhC-CCCcEEEEecHHHhhhcccccCHHHHHHhCCEEEEECCCCCcccccccCcEEEecCCccccC
Confidence 22345566776655555 43 889999975555567777777777777766652 2599
Q ss_pred HHHHHHHHHhc
Q 017744 193 STDIVGRILSS 203 (366)
Q Consensus 193 ST~Ir~rI~~~ 203 (366)
||+||+++.++
T Consensus 158 ST~IR~~~~~~ 168 (342)
T PRK07152 158 STKIRKGNLLG 168 (342)
T ss_pred HHHHHHHHHcC
Confidence 99999999865
No 74
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.21 E-value=5.2e-11 Score=118.04 Aligned_cols=134 Identities=17% Similarity=0.186 Sum_probs=87.4
Q ss_pred CCeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcC-cccc--EE-EecCCcc
Q 017744 64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVD--EV-IANAPYA 139 (366)
Q Consensus 64 ~~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~-~~VD--~v-v~~~p~~ 139 (366)
+..+++++|.||++|.||..++++|.+.+|+|+|++.+...-. .+ +..++.+||++|++.+ +.++ .+ +...|-.
T Consensus 5 ~~~~~~~~G~F~P~H~GHl~~i~~a~~~~d~l~v~i~s~~~~~-~~-~~~~~~~~R~~mi~~~~~~~~~~r~~~~pi~d~ 82 (340)
T PRK05379 5 RYDYLVFIGRFQPFHNGHLAVIREALSRAKKVIVLIGSADLAR-SI-KNPFSFEERAQMIRAALAGIDLARVTIRPLRDS 82 (340)
T ss_pred cceEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEEccCCCCC-cC-CCCCCHHHHHHHHHHHhhcCCCceEEEEECCCC
Confidence 4568899999999999999999999999999999998654221 22 3458999999999975 3232 22 2222222
Q ss_pred -ccH----HHHHHHhh---ccCccEEEEcCCCCCCCCCCchHH-HHHhCCeEEEeccCCCCCHHHHHHHHHhcc
Q 017744 140 -ITE----QFMNRLFN---EHKIDYIIHGDDPCLLPDGTDAYA-LAKKVGRYKQIKRTEGVSSTDIVGRILSSM 204 (366)
Q Consensus 140 -~~~----eFl~~ll~---~l~~d~VV~G~D~~fg~~g~~~~~-~lk~~g~~~~v~r~~~vSST~Ir~rI~~~~ 204 (366)
+.. ..+...+. ..++|++++|+|+.. ...|. ...+.| +..++..+++|+|.||++|..+-
T Consensus 83 ~~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~~~----~~~~~~~f~~~~-~~~~~~~~~~s~T~iR~~~~~~~ 151 (340)
T PRK05379 83 LYNDSLWLAEVQAAVAEHAGADARIGLIGHEKDA----SSYYLRSFPQWE-LVDVPNTEDLSATEIRDAYFEGR 151 (340)
T ss_pred CcChHHHHHHHHHHHHhccCCCCcEEEECCcCCC----ChHHHHhccccc-cccCCcccccCccHHHHHHHcCC
Confidence 122 12221111 257899999987721 11222 122333 33555667899999999998653
No 75
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.19 E-value=7.3e-11 Score=105.37 Aligned_cols=91 Identities=23% Similarity=0.249 Sum_probs=67.1
Q ss_pred EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHH-hcCCCC----cEEEc--CCC
Q 017744 259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVD----EVIIG--APW 331 (366)
Q Consensus 259 v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd----~Vvi~--~~~ 331 (366)
+++.|+|||||.||+.++++|++.+|+|+|+|.++... .|. ..-++.+||++|++ +++.+| +|.+. ...
T Consensus 2 ~v~~G~FdP~H~GHl~~i~~a~~~~d~l~v~v~s~~~~--~~~--~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d~ 77 (163)
T cd02166 2 ALFIGRFQPFHLGHLKVIKWILEEVDELIIGIGSAQES--HTL--ENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPDI 77 (163)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHCCEEEEEecCCCCC--CCC--CCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCCC
Confidence 68999999999999999999999999999999877543 222 34568999999999 557765 44442 222
Q ss_pred CchHHHHHHc------CCcEEEECCCCCC
Q 017744 332 EVTKDMITTF------NICLVVHGTVSET 354 (366)
Q Consensus 332 ~~~~d~i~~~------~~~~vv~G~~~~~ 354 (366)
. ..+...+. +.|+++-|.+|..
T Consensus 78 ~-~~~~w~~~v~~~vp~~div~~g~~~~~ 105 (163)
T cd02166 78 E-RNSLWVSYVESLTPPFDVVYSGNPLVA 105 (163)
T ss_pred C-chHHHHHHHHHHCCCCCEEEECchHHH
Confidence 2 23444444 7899999977654
No 76
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=99.15 E-value=1.9e-10 Score=102.23 Aligned_cols=126 Identities=21% Similarity=0.237 Sum_probs=79.8
Q ss_pred EEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCC-CCCCcHHHHHHHHhcC-ccccEE---E---ecCCcc
Q 017744 68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG-PPVLSMEERLALVSGL-KWVDEV---I---ANAPYA 139 (366)
Q Consensus 68 V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~-~pi~t~eER~~ll~~~-~~VD~v---v---~~~p~~ 139 (366)
.+++|+||++|.||+.++++|.+.+|+|+|++.+.+. .|. +..++.++|++|++.. ..-+.+ . .+.|+.
T Consensus 2 gl~~G~F~P~H~GHl~li~~a~~~~d~v~vi~~~~~~---~~~~~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~d~~~~ 78 (158)
T cd02167 2 GIVFGKFAPLHTGHVYLIYKALSQVDELLIIVGSDDT---RDDARTGLPLEKRLRWLREIFPDQENIVVHTLNEPDIPEY 78 (158)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCc---ccccCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCC
Confidence 5789999999999999999999999999999988762 222 5677999999999964 221111 1 122321
Q ss_pred c--cH---HHHHHHhhcc---CccEEEEcCCCCCCCCCCchHHHHHhCC-eEEEe--cc-CCCCCHHHHHHHHH
Q 017744 140 I--TE---QFMNRLFNEH---KIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQI--KR-TEGVSSTDIVGRIL 201 (366)
Q Consensus 140 ~--~~---eFl~~ll~~l---~~d~VV~G~D~~fg~~g~~~~~~lk~~g-~~~~v--~r-~~~vSST~Ir~rI~ 201 (366)
- -. ..++..+.+. ++|+++.|+++.. ..+......+ +...+ .+ ...+|+|.||+-..
T Consensus 79 ~~~w~~w~~~v~~~v~~~~~~~~~~vf~~~~~~~-----~~~~~~~~~~~~~~~v~~~r~~~~iSaT~IR~~p~ 147 (158)
T cd02167 79 PNGWDIWSNRVKTLIAENTRCRPDIVFTAEEYEA-----AFELVLAYLGAQVVLVDPDRTDISVSATQIRENPF 147 (158)
T ss_pred chhHHHHHHHHHHHHhhhcCCCCCEEEEccCcch-----hhhhHhhcCCCeEEEeccccccCCcCHHHHHhCHH
Confidence 0 11 2233333321 6889999977621 1111122233 33332 23 45799999998654
No 77
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=99.14 E-value=9.1e-11 Score=102.70 Aligned_cols=92 Identities=24% Similarity=0.336 Sum_probs=68.6
Q ss_pred EEEcCccccCChHHHHHHHHHHhcC-CEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc-CCC------CcEEEcCC
Q 017744 259 VYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYV------DEVIIGAP 330 (366)
Q Consensus 259 v~~~GsFD~~h~GHi~~L~~A~~~g-d~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~V------d~Vvi~~~ 330 (366)
|++.|+||++|.||..+|++|..++ |+++|||++|+... .|....+++++++|+++++.+ ... .-+.+.++
T Consensus 2 v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~~~-~k~~~~~i~s~e~R~~~l~~~l~~~~~~~~~~i~~i~d~ 80 (143)
T cd02164 2 VAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELLK-NKSLKELIEPYEERIANLHEFLVDLKPTLKYEIVPIDDP 80 (143)
T ss_pred EEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchhcc-cCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccCC
Confidence 7899999999999999999999998 89999999997443 332224689999999888876 322 12344667
Q ss_pred CCchHHHHHHcCCcEEEECCCCCC
Q 017744 331 WEVTKDMITTFNICLVVHGTVSET 354 (366)
Q Consensus 331 ~~~~~d~i~~~~~~~vv~G~~~~~ 354 (366)
++.+. ..-..|++|-..+-..
T Consensus 81 ~Gpt~---~~~~~d~lVVS~ET~~ 101 (143)
T cd02164 81 YGPTG---TDPDLEAIVVSPETYP 101 (143)
T ss_pred CCCcc---cCCCCCEEEEcHHHhh
Confidence 77653 2356888887765543
No 78
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=99.09 E-value=5e-11 Score=98.42 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=50.9
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc
Q 017744 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC 319 (366)
Q Consensus 258 ~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~ 319 (366)
+++++|+|||+|.||+.++++|++++|.+++++..++... .+ .++.++++|..+++++
T Consensus 1 ~~~~~G~Fdp~H~GH~~l~~~a~~~~d~~i~~i~~~~~~~---~~-~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 1 KARFPGEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPVK---VW-QDPHELEERKESIEED 58 (105)
T ss_pred CEEeCCCCCCCCHHHHHHHHHHHHhCCcEEEEEcCCCccc---cc-CChHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999886542 22 4689999999999987
No 79
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.06 E-value=1.1e-09 Score=108.54 Aligned_cols=99 Identities=17% Similarity=0.252 Sum_probs=71.3
Q ss_pred CCCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc-CCCC--cEEEcC-
Q 017744 254 PNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVD--EVIIGA- 329 (366)
Q Consensus 254 ~~~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd--~Vvi~~- 329 (366)
..++++++.|+|||||.||+.++++|++.+|+|+|++.++.... .| + +| ++.+||..|++.+ +.++ +|.+..
T Consensus 4 ~~~~~~~~~G~F~P~H~GHl~~i~~a~~~~d~l~v~i~s~~~~~-~~-~-~~-~~~~~R~~mi~~~~~~~~~~r~~~~pi 79 (340)
T PRK05379 4 RRYDYLVFIGRFQPFHNGHLAVIREALSRAKKVIVLIGSADLAR-SI-K-NP-FSFEERAQMIRAALAGIDLARVTIRPL 79 (340)
T ss_pred ccceEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEEccCCCCC-cC-C-CC-CCHHHHHHHHHHHhhcCCCceEEEEEC
Confidence 34689999999999999999999999999999999998764322 22 1 34 7999999999987 6443 344422
Q ss_pred CCC-----chHHHHHH-------cCCcEEEECCCCCCCC
Q 017744 330 PWE-----VTKDMITT-------FNICLVVHGTVSETNT 356 (366)
Q Consensus 330 ~~~-----~~~d~i~~-------~~~~~vv~G~~~~~~~ 356 (366)
+.. .-...+++ -++|+++.|.+++.++
T Consensus 80 ~d~~~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~~~~~ 118 (340)
T PRK05379 80 RDSLYNDSLWLAEVQAAVAEHAGADARIGLIGHEKDASS 118 (340)
T ss_pred CCCCcChHHHHHHHHHHHHhccCCCCcEEEECCcCCCCh
Confidence 111 12233332 5789999998885443
No 80
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=99.02 E-value=2.2e-09 Score=108.65 Aligned_cols=130 Identities=19% Similarity=0.240 Sum_probs=83.7
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhh-----hhcCCCCCCcHHHHHHHHhcC-ccccEE-Ee---
Q 017744 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI-----IANKGPPVLSMEERLALVSGL-KWVDEV-IA--- 134 (366)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i-----~~~K~~pi~t~eER~~ll~~~-~~VD~v-v~--- 134 (366)
.++++++|+||++|.||+.+|++|.+++|+|+|+|.+++.- ...|.+..++.++|.++++.. +..+.| |.
T Consensus 52 ~~~~v~~G~FdP~H~GH~~lI~~A~~~~d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~~v~v~~~~ 131 (399)
T PRK08099 52 KKIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQKNIKIHAFN 131 (399)
T ss_pred CcEEEEEEecCCCCHHHHHHHHHHHHHCCeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCCCEEEEecC
Confidence 35799999999999999999999999999999998877621 112225688999999999974 222222 11
Q ss_pred --cCC-cccc-H---HHHHHHhhc--cCccEEEEcCCCCCCCCCCchHHHHHhCC-eEEEec--c-CCCCCHHHHHHHHH
Q 017744 135 --NAP-YAIT-E---QFMNRLFNE--HKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIK--R-TEGVSSTDIVGRIL 201 (366)
Q Consensus 135 --~~p-~~~~-~---eFl~~ll~~--l~~d~VV~G~D~~fg~~g~~~~~~lk~~g-~~~~v~--r-~~~vSST~Ir~rI~ 201 (366)
+.| +... . +-+...+.+ .++++++.|.++. .+.| ++..+ +...++ | ..+||+|.||+-..
T Consensus 132 ~~~~~~~~~~~~~w~~~v~~~v~~~~~~~~~vf~~~~~d-----~~~~--~~~~~~~~~~vd~~r~~~~iSaT~IR~~p~ 204 (399)
T PRK08099 132 EEGMEPYPHGWDVWSNGIKAFMAEKGIQPDVIYTSEEQD-----APQY--EEHLGIETVLVDPKRTFMNISGTQIRENPF 204 (399)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEeCCCC-----hHHH--HHhcCCceeeeccccccCCcCHHHHhhCHH
Confidence 111 1111 1 223333332 2689999997762 1234 34323 344444 3 35799999998654
No 81
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=99.02 E-value=8e-10 Score=98.27 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=68.9
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc-CCCCcEEEcCCC--Cch
Q 017744 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVIIGAPW--EVT 334 (366)
Q Consensus 258 ~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd~Vvi~~~~--~~~ 334 (366)
++++.|+|||+|.||+.++++|++.+|.|+|.+.++.. .|.+ ++.++.++|+.|++.. +..+.+.+.... +..
T Consensus 1 igl~~G~F~P~H~GHl~li~~a~~~~d~v~vi~~~~~~---~~~~-~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~d~~ 76 (158)
T cd02167 1 IGIVFGKFAPLHTGHVYLIYKALSQVDELLIIVGSDDT---RDDA-RTGLPLEKRLRWLREIFPDQENIVVHTLNEPDIP 76 (158)
T ss_pred CEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCc---cccc-CCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Confidence 36889999999999999999999999999999998753 3333 5677999999998876 665555552111 111
Q ss_pred ---------H----HHHHHc---CCcEEEECCCCCCCC
Q 017744 335 ---------K----DMITTF---NICLVVHGTVSETNT 356 (366)
Q Consensus 335 ---------~----d~i~~~---~~~~vv~G~~~~~~~ 356 (366)
. .++.+. ++|+++-|.++....
T Consensus 77 ~~~~~w~~w~~~v~~~v~~~~~~~~~~vf~~~~~~~~~ 114 (158)
T cd02167 77 EYPNGWDIWSNRVKTLIAENTRCRPDIVFTAEEYEAAF 114 (158)
T ss_pred CCchhHHHHHHHHHHHHhhhcCCCCCEEEEccCcchhh
Confidence 1 233322 789999998775443
No 82
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.01 E-value=1.5e-09 Score=98.55 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=65.8
Q ss_pred EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc-CC--C--CcEEEcCCCC-
Q 017744 259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RY--V--DEVIIGAPWE- 332 (366)
Q Consensus 259 v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~--V--d~Vvi~~~~~- 332 (366)
+++.|+|||||.||+.++++|.+.+|+|+|+|.+.+.. +.+ ++.++.+||.+|++.+ .. + +.|.+..-.+
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~~~vii~i~s~~~~-~~~---~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~D~ 77 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKAKKVIILIGSARTA-RNI---KNPWTSEEREVMIEAALSDAGADLARVHFRPLRDH 77 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHCCeEEEEeCCCCCC-CCC---CCCcCHHHHHHHHHHHHhccCCCcceEEEEecCCC
Confidence 58999999999999999999999999999999877432 222 3557999999999985 32 2 2444432111
Q ss_pred -----chHHHHHH-------cCCcEEEECCCCCCCC
Q 017744 333 -----VTKDMITT-------FNICLVVHGTVSETNT 356 (366)
Q Consensus 333 -----~~~d~i~~-------~~~~~vv~G~~~~~~~ 356 (366)
.-...+++ .++++++.|.+++.++
T Consensus 78 ~~~~~~W~~~v~~~v~~~~~~~~~i~~~g~~kd~~~ 113 (181)
T cd02168 78 LYSDNLWLAEVQQQVLEIAGGSASVGLVGHRKDASS 113 (181)
T ss_pred CCChHHHHHHHHHhChHhhCCCCcEEEeCCccCCCc
Confidence 12222221 2678999998886443
No 83
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=99.01 E-value=1.6e-09 Score=105.95 Aligned_cols=97 Identities=22% Similarity=0.169 Sum_probs=75.3
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcCCEEE---EEEecCchhhcc---cCCCCCCCCHHHHHHHHHhcCCCCcEEEcCCC
Q 017744 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLL---VGIYTDQIVSEH---RGSYHPIMHLHERSLSVLACRYVDEVIIGAPW 331 (366)
Q Consensus 258 ~v~~~GsFD~~h~GHi~~L~~A~~~gd~Li---VgV~sD~~v~~~---Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~~~ 331 (366)
.|++-|+||.+|.||..+|++|+++++.+. +.++-|+..... +...+++++.+||...++++. ||.+++..+.
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~g-VD~~~~~~F~ 93 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAELG-VDYVLVLPFD 93 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHcC-CCEEEEecCC
Confidence 799999999999999999999999998653 344445433211 212368999999999999998 9999985532
Q ss_pred -----CchHHHHHH-----cCCcEEEECCCCCCC
Q 017744 332 -----EVTKDMITT-----FNICLVVHGTVSETN 355 (366)
Q Consensus 332 -----~~~~d~i~~-----~~~~~vv~G~~~~~~ 355 (366)
....+|+++ ++++.+|.|.||.-+
T Consensus 94 ~~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG 127 (305)
T PRK05627 94 EEFAKLSAEEFIEDLLVKGLNAKHVVVGFDFRFG 127 (305)
T ss_pred HHHhcCCHHHHHHHHHHhccCCCEEEECCCCCCC
Confidence 145677764 899999999999744
No 84
>PRK13670 hypothetical protein; Provisional
Probab=99.00 E-value=1.4e-09 Score=109.65 Aligned_cols=104 Identities=19% Similarity=0.310 Sum_probs=77.6
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHhCC-eeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCccccEEEecCCcccc----
Q 017744 67 RVYMDGCFDLMHYGHANALRQAKALGD-ELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAIT---- 141 (366)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qAk~lgd-~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vv~~~p~~~~---- 141 (366)
.+=++==|||+|.||+.+|++|++.+. .++++|.|...+.+ ..+.+++.++|.+++..+ +||.|+. .||.+.
T Consensus 3 ~~GIIaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qr-g~p~i~~~~~R~~~a~~~-GvD~vie-lpf~~a~~sa 79 (388)
T PRK13670 3 VTGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQR-GEPAIVDKWTRAKMALEN-GVDLVVE-LPFLYSVQSA 79 (388)
T ss_pred eeEEEeeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCC-CCCCCCCHHHHHHHHHHc-CCCEEEE-eCCchHhCCH
Confidence 344455699999999999999999763 34555556554433 226699999999999998 9999997 666554
Q ss_pred HHHHHH---HhhccCccEEEEcCCCCCCCCCCchHHHHHhCC
Q 017744 142 EQFMNR---LFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180 (366)
Q Consensus 142 ~eFl~~---ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~g 180 (366)
++|+.. ++.+++++.||+|.| .|+.+.+++.+
T Consensus 80 e~F~~~aV~iL~~l~v~~lv~G~e-------~g~~~~L~~~~ 114 (388)
T PRK13670 80 DFFAEGAVSILDALGVDSLVFGSE-------SGDIEDFQKIA 114 (388)
T ss_pred HHHHHhHHHHHHHcCCCEEEEcCC-------CCCHHHHHHHH
Confidence 478876 778899999999999 34455555444
No 85
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=98.97 E-value=2.3e-09 Score=93.98 Aligned_cols=88 Identities=25% Similarity=0.398 Sum_probs=67.7
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcC-ccccEEEecCCccccHH
Q 017744 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVDEVIANAPYAITEQ 143 (366)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~-~~VD~vv~~~p~~~~~e 143 (366)
+++++..|+||+++.||..+|++|.++.|+++|+|...+ .| +|+++.+||.++++.. +..+.|-.. .| + .
T Consensus 2 ~~iavypGSFDPiTnGHlDii~RA~~~Fd~viVaV~~np----~K-~plFsleER~~l~~~~~~~l~nV~V~-~f--~-~ 72 (159)
T COG0669 2 MKIAVYPGSFDPITNGHLDIIKRASALFDEVIVAVAINP----SK-KPLFSLEERVELIREATKHLPNVEVV-GF--S-G 72 (159)
T ss_pred CeeEEeCCCCCCCccchHHHHHHHHHhccEEEEEEEeCC----Cc-CCCcCHHHHHHHHHHHhcCCCceEEE-ec--c-c
Confidence 468999999999999999999999999999999998654 34 7999999999999963 223333221 11 1 2
Q ss_pred HHHHHhhccCccEEEEcC
Q 017744 144 FMNRLFNEHKIDYIIHGD 161 (366)
Q Consensus 144 Fl~~ll~~l~~d~VV~G~ 161 (366)
++-++.++.++.++|-|=
T Consensus 73 Llvd~ak~~~a~~ivRGL 90 (159)
T COG0669 73 LLVDYAKKLGATVLVRGL 90 (159)
T ss_pred HHHHHHHHcCCCEEEEec
Confidence 444455678999999993
No 86
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.93 E-value=2.1e-09 Score=106.25 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=60.2
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc-CCCCcEEEcCCCCc
Q 017744 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVIIGAPWEV 333 (366)
Q Consensus 255 ~~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd~Vvi~~~~~~ 333 (366)
+.+++.+.|+|||||.||++++++|.+++|.++|+|..+ + +++++.++|..+++.. +..++|.+....++
T Consensus 138 ~~~i~~~~g~fdP~t~GH~~li~~A~~~~d~~~v~v~~~------~---~~~f~~~~R~~~v~~~~~~~~nv~v~~~~~~ 208 (332)
T TIGR00124 138 GNKIGSIVMNANPFTNGHRYLIEQAARQCDWLHLFVVKE------D---ASLFSYDERFALVKQGIQDLSNVTVHNGSAY 208 (332)
T ss_pred CCcEEEEEeCcCCCchHHHHHHHHHHHHCCEEEEEEEeC------C---CCCCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 468999999999999999999999999999999999632 2 5799999999988875 88888888655443
No 87
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=98.93 E-value=1.6e-09 Score=94.52 Aligned_cols=105 Identities=22% Similarity=0.322 Sum_probs=77.2
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc----CC-CC-cEEEc
Q 017744 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC----RY-VD-EVIIG 328 (366)
Q Consensus 255 ~~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~----~~-Vd-~Vvi~ 328 (366)
+..+|.+.||||.+|.||-.+|+.|..+|+.+++|++||+.+.++|. .++.+++.|.+.|... +. -. -|-+.
T Consensus 4 kfm~vavGGTFd~LH~GHk~LL~~A~~~G~~v~IGlTsDe~~k~~k~--~~i~p~~~R~~~l~~fl~~~~~~~~~iv~i~ 81 (158)
T COG1019 4 KFMKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKK--EKIEPYEVRLRNLRNFLESIKADYEEIVPID 81 (158)
T ss_pred cceEEEecccchhhhhhHHHHHHHHHHhCCeEEEEEccHHHHHHhcc--ccCCcHHHHHHHHHHHHHHhcCCcceEEEec
Confidence 45789999999999999999999999999999999999999987653 6999999999766654 21 12 24446
Q ss_pred CCCCchHHHHHHcCCcEEEECCCCCCCCc--ccccccc
Q 017744 329 APWEVTKDMITTFNICLVVHGTVSETNTP--LTVRSKR 364 (366)
Q Consensus 329 ~~~~~~~d~i~~~~~~~vv~G~~~~~~~~--~~~~~~~ 364 (366)
+|++.+. ..-..+++|-..+-..... +.+|.||
T Consensus 82 Dp~G~t~---~~~~~e~iVVS~ET~~~Al~IN~~R~~~ 116 (158)
T COG1019 82 DPYGPTV---EDPDFEAIVVSPETYPGALKINEIREKR 116 (158)
T ss_pred CCCCCCC---CcCceeEEEEccccchhHHHHHHHHHHC
Confidence 7777653 2335677776665544332 3444443
No 88
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=98.92 E-value=1.5e-09 Score=107.10 Aligned_cols=69 Identities=16% Similarity=0.153 Sum_probs=56.5
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc-CCCCc-EEEc
Q 017744 256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDE-VIIG 328 (366)
Q Consensus 256 ~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd~-Vvi~ 328 (366)
|+++++.|+|||+|.||+.++++|++++|+|+|.+.+.. .++.+ ++.++.++|+.+++.. +..++ |.+.
T Consensus 1 ~~i~i~~GsFdP~H~GHl~ii~~a~~~~d~v~v~~~~~~---~~~~~-~~~~~~~~R~~~l~~~~~~~~~~v~v~ 71 (325)
T TIGR01526 1 KTIGVVFGKFYPLHTGHIYLIYEAFSKVDELHIVVGSLF---YDSKA-KRPPPVQDRLRWLREIFKYQKNQIFIH 71 (325)
T ss_pred CcEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCC---cCccC-CCCCCHHHHHHHHHHHhccCCCeEEEE
Confidence 468999999999999999999999999999999997632 22112 5888999999999765 77777 6654
No 89
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=98.91 E-value=8.1e-09 Score=96.88 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=51.2
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHhC--Ce-e-EE-EE-ccchhhhhcCCCCCCcHHHHHHHHhc-CccccEE------E
Q 017744 67 RVYMDGCFDLMHYGHANALRQAKALG--DE-L-VV-GV-VSDEEIIANKGPPVLSMEERLALVSG-LKWVDEV------I 133 (366)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qAk~lg--d~-L-vV-gv-~sd~~i~~~K~~pi~t~eER~~ll~~-~~~VD~v------v 133 (366)
..+.+|+||++|.||+.++++|.+.. +. + ++ ++ .+.. ....| ....+.++|++|++. +...+.+ +
T Consensus 2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~-~~~~k-~~~~~~~~Rl~Ml~lai~~~~~~~v~~~E~ 79 (225)
T cd09286 2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVN-DAYGK-KGLASAKHRVAMCRLAVQSSDWIRVDDWES 79 (225)
T ss_pred EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeec-cCCCC-CCCCCHHHHHHHHHHHHccCCCEEEEehhc
Confidence 36789999999999999999998875 22 1 21 11 1111 11223 567799999999983 2222222 2
Q ss_pred ecCCccccHHHHHHHhhcc
Q 017744 134 ANAPYAITEQFMNRLFNEH 152 (366)
Q Consensus 134 ~~~p~~~~~eFl~~ll~~l 152 (366)
....+.+|-+.++.+.+++
T Consensus 80 ~~~~~syT~~TL~~l~~~~ 98 (225)
T cd09286 80 LQPEWMRTAKVLRHHREEI 98 (225)
T ss_pred cCCccccHHHHHHHHHHHh
Confidence 2223445556776665555
No 90
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=98.90 E-value=1.2e-08 Score=96.25 Aligned_cols=97 Identities=19% Similarity=0.168 Sum_probs=59.0
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHhC--Cee-EE--EEccchhhhhcCCCCCCcHHHHHHHHhc-Ccccc------EE
Q 017744 65 RVRVYMDGCFDLMHYGHANALRQAKALG--DEL-VV--GVVSDEEIIANKGPPVLSMEERLALVSG-LKWVD------EV 132 (366)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qAk~lg--d~L-vV--gv~sd~~i~~~K~~pi~t~eER~~ll~~-~~~VD------~v 132 (366)
....+.+|+||++|.||+.+++.|++.- +.+ +| .+.+.. ....| ....+.++|++|++. +..-. ..
T Consensus 22 ~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~-~~~~k-~~~~~~~~Rl~Ml~lai~~~~~~~V~~~E 99 (236)
T PLN02945 22 RVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVN-DAYKK-KGLASAEHRIQMCQLACEDSDFIMVDPWE 99 (236)
T ss_pred eEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCC-ccccc-CCCCCHHHHHHHHHHHhcCCCCeEecHHH
Confidence 3456778899999999999999888864 332 22 222211 11223 356799999999972 22222 22
Q ss_pred EecCCccccHHHHHHHhhccC-------cc---EEEEcCCC
Q 017744 133 IANAPYAITEQFMNRLFNEHK-------ID---YIIHGDDP 163 (366)
Q Consensus 133 v~~~p~~~~~eFl~~ll~~l~-------~d---~VV~G~D~ 163 (366)
+....+++|.+.++.+-++++ ++ ++++|.|.
T Consensus 100 ~~~~~~syT~dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D~ 140 (236)
T PLN02945 100 ARQSTYQRTLTVLARVETSLNNNGLASEESVRVMLLCGSDL 140 (236)
T ss_pred hCCCCCccHHHHHHHHHHHhccccccCCCCceEEEEechhH
Confidence 222334455677766555552 23 78999983
No 91
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=98.88 E-value=1.1e-08 Score=94.31 Aligned_cols=93 Identities=18% Similarity=0.162 Sum_probs=68.4
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc-CCCCcEEEcC---
Q 017744 256 ARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVIIGA--- 329 (366)
Q Consensus 256 ~~~v~~~GsFD~~h~GHi~~L~~A~~~g--d~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd~Vvi~~--- 329 (366)
++++++.|+|||+|.||+.++++|++.+ |.+++.++... ..|.. ....+.++|++|++.. +..+.+.+..
T Consensus 4 ~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~---~~k~~-~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~ 79 (203)
T PRK00071 4 KRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGP---PHKPQ-KPLAPLEHRLAMLELAIADNPRFSVSDIEL 79 (203)
T ss_pred cEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCC---CCCCC-CCCCCHHHHHHHHHHHhcCCCceEEeHHHH
Confidence 5799999999999999999999999876 88888776553 33432 4688999999999765 7777777751
Q ss_pred ---CCCchHHHHH---HcCCc---EEEECCCC
Q 017744 330 ---PWEVTKDMIT---TFNIC---LVVHGTVS 352 (366)
Q Consensus 330 ---~~~~~~d~i~---~~~~~---~vv~G~~~ 352 (366)
....|.+.++ +..++ +++.|.|.
T Consensus 80 ~~~~~syT~~tl~~l~~~~p~~~~~fiiG~D~ 111 (203)
T PRK00071 80 ERPGPSYTIDTLRELRARYPDVELVFIIGADA 111 (203)
T ss_pred hCCCCCCHHHHHHHHHHHCCCCcEEEEEcHHH
Confidence 1234555544 44455 78889664
No 92
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=98.86 E-value=9.3e-09 Score=93.76 Aligned_cols=90 Identities=17% Similarity=0.129 Sum_probs=66.3
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc-CCCCcEEEcCC----
Q 017744 258 VVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVIIGAP---- 330 (366)
Q Consensus 258 ~v~~~GsFD~~h~GHi~~L~~A~~~g--d~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd~Vvi~~~---- 330 (366)
++++.|||||+|.||+.++++|++.+ |.|++.+..+. ..|+ .+.++.++|++|++.+ +..+++.+...
T Consensus 1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~---~~k~--~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~ 75 (192)
T cd02165 1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANP---PHKP--PKPASFEHRLEMLKLAIEDNPKFEVSDIEIKR 75 (192)
T ss_pred CeEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCC---CCCC--CCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhC
Confidence 47899999999999999999999999 99999886653 3343 4788999999999876 66677777422
Q ss_pred --CCchHHHHH---HcCCc---EEEECCCC
Q 017744 331 --WEVTKDMIT---TFNIC---LVVHGTVS 352 (366)
Q Consensus 331 --~~~~~d~i~---~~~~~---~vv~G~~~ 352 (366)
...|.+.++ +..++ +++.|.|.
T Consensus 76 ~~~~~t~~tl~~l~~~~p~~~~~~liG~D~ 105 (192)
T cd02165 76 DGPSYTIDTLEELRERYPNAELYFIIGSDN 105 (192)
T ss_pred CCCCCHHHHHHHHHHhccCCCEEEEEcHHH
Confidence 234444444 43343 67778654
No 93
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=98.82 E-value=3.8e-09 Score=101.91 Aligned_cols=112 Identities=21% Similarity=0.280 Sum_probs=86.2
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhh-hcCC--CCCCcHHHHHHHHhcCccccEEEecCCcccc-
Q 017744 66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKG--PPVLSMEERLALVSGLKWVDEVIANAPYAIT- 141 (366)
Q Consensus 66 ~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~-~~K~--~pi~t~eER~~ll~~~~~VD~vv~~~p~~~~- 141 (366)
-.|.++|. +|.||+.||++|++.++.++|.+..++.-. +... +.+.+.++|+++++.+ +||.++....-++.
T Consensus 25 g~V~TmG~---LH~GH~~LI~~a~~~a~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~-GvD~vF~p~~~~m~p 100 (277)
T cd00560 25 GFVPTMGA---LHEGHLSLVRRARAENDVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA-GVDLLFAPSVEEMYP 100 (277)
T ss_pred EEEECCCc---ccHHHHHHHHHHHHhCCEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHC-CCCEEECCCHHHcCC
Confidence 46789999 999999999999999998888887776532 1122 4588899999999997 99999642222222
Q ss_pred HHHHHHHhhccCccEEEEcC----------------------C-CCCCCCCCchHHHHHhCCe
Q 017744 142 EQFMNRLFNEHKIDYIIHGD----------------------D-PCLLPDGTDAYALAKKVGR 181 (366)
Q Consensus 142 ~eFl~~ll~~l~~d~VV~G~----------------------D-~~fg~~g~~~~~~lk~~g~ 181 (366)
++|+..+.+..++..+++|. | ++||.++.+....+++.++
T Consensus 101 ~~f~~~~v~~~~~~~il~G~~RpghF~GV~tvv~kLf~iv~Pd~~~FG~kd~gq~~~Lk~~~~ 163 (277)
T cd00560 101 EGLFSTFVDVGPLSEVLEGASRPGHFRGVATVVAKLFNLVQPDRAYFGEKDAQQLAVIRRMVR 163 (277)
T ss_pred CCCceEEEecCCCceEEecCCCCccccceeeeehhhhcccCCCeEEECCCccccHHHHHHHHH
Confidence 35554344557899999999 9 9999999999998888653
No 94
>PLN02388 phosphopantetheine adenylyltransferase
Probab=98.81 E-value=6.5e-09 Score=93.96 Aligned_cols=100 Identities=23% Similarity=0.324 Sum_probs=75.3
Q ss_pred CCCCCeEEEEcCccccCChHHHHHHHHHHhcC-CEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc-CCC------C
Q 017744 252 PGPNARVVYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYV------D 323 (366)
Q Consensus 252 ~~~~~~~v~~~GsFD~~h~GHi~~L~~A~~~g-d~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~V------d 323 (366)
+......|++.|+||.+|.||..+|++|..++ +.++||+.+|+.... |.....+.++++|...++++ ..+ .
T Consensus 15 ~~~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~~-k~~~~~I~~~e~R~~~l~~fl~~~~p~~~~~ 93 (177)
T PLN02388 15 PPNSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLSK-KQFAELIQPIEERMHNVEEYIKSIKPELVVQ 93 (177)
T ss_pred CCCcCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhcc-cCCCcccCCHHHHHHHHHHHHHHcCCCceEE
Confidence 34446789999999999999999999999998 489999999987633 43236799999999888876 221 2
Q ss_pred cEEEcCCCCchHHHHHHcCCcEEEECCCCCCC
Q 017744 324 EVIIGAPWEVTKDMITTFNICLVVHGTVSETN 355 (366)
Q Consensus 324 ~Vvi~~~~~~~~d~i~~~~~~~vv~G~~~~~~ 355 (366)
-+.+.+|++.+. ..-++|.+|-+.+-..+
T Consensus 94 i~~i~D~~Gpt~---~~~~~d~LVVS~ET~~g 122 (177)
T PLN02388 94 AEPIIDPYGPSI---VDENLEAIVVSKETLPG 122 (177)
T ss_pred EEEecCCCCCcc---cCCCCCEEEEcHhHhhh
Confidence 234567778653 24578888888766544
No 95
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=98.81 E-value=2.7e-08 Score=100.82 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=73.8
Q ss_pred CCCCCCCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhc--cc-CCCCCCCCHHHHHHHHHhc-CCCCcE
Q 017744 250 KGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSE--HR-GSYHPIMHLHERSLSVLAC-RYVDEV 325 (366)
Q Consensus 250 ~~~~~~~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~--~K-g~~~pi~~~~eR~~~v~~~-~~Vd~V 325 (366)
+.|....+++++.|+|||+|.||+.+|++|++++|.|+|+|.++..-.. .+ -+....++.++|..+++.. ++.++|
T Consensus 46 ~~~~~~~~~~v~~G~FdP~H~GH~~lI~~A~~~~d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~~v 125 (399)
T PRK08099 46 EFPRQMKKIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQKNI 125 (399)
T ss_pred ChhhhcCcEEEEEEecCCCCHHHHHHHHHHHHHCCeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCCCE
Confidence 3444456799999999999999999999999999999999998852100 00 0114688999999998876 887777
Q ss_pred EEcCCCC-----------ch----HHHHHH--cCCcEEEECCCCC
Q 017744 326 IIGAPWE-----------VT----KDMITT--FNICLVVHGTVSE 353 (366)
Q Consensus 326 vi~~~~~-----------~~----~d~i~~--~~~~~vv~G~~~~ 353 (366)
.+....+ .- ...+.+ .++++++-|.+..
T Consensus 126 ~v~~~~~~~~~~~~~~~~~w~~~v~~~v~~~~~~~~~vf~~~~~d 170 (399)
T PRK08099 126 KIHAFNEEGMEPYPHGWDVWSNGIKAFMAEKGIQPDVIYTSEEQD 170 (399)
T ss_pred EEEecCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 7752111 11 222333 2689999997775
No 96
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=98.81 E-value=2.5e-08 Score=90.06 Aligned_cols=90 Identities=24% Similarity=0.282 Sum_probs=61.8
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc-C--CC--CcEEEcC-C-
Q 017744 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-R--YV--DEVIIGA-P- 330 (366)
Q Consensus 258 ~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~-~--~V--d~Vvi~~-~- 330 (366)
++++.|+|||+|.||+.++++|.+.+|+|+|+|.+... ..+. ++.++.+||.+|++.. . .+ +++.+.. +
T Consensus 2 ~gl~~G~F~P~H~GHl~~i~~a~~~~d~v~v~i~s~~~--~~~~--~~p~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~D 77 (174)
T PRK01153 2 RALFIGRFQPFHKGHLEVIKWILEEVDELIIGIGSAQE--SHTL--KNPFTAGERILMIRKALEEEGIDLSRYYIIPIPD 77 (174)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHhCCEEEEEecCCCC--CCCC--CCCCCHHHHHHHHHHHHhcCCCCcceeeEecCCC
Confidence 58899999999999999999999999999999975432 2222 2346999999998855 3 22 2444432 1
Q ss_pred CCchHHHHHHc-----CCcEEEECCC
Q 017744 331 WEVTKDMITTF-----NICLVVHGTV 351 (366)
Q Consensus 331 ~~~~~d~i~~~-----~~~~vv~G~~ 351 (366)
......+.... .+|+++-|..
T Consensus 78 ~~~~~~w~~~v~~~~~~~d~v~~~~~ 103 (174)
T PRK01153 78 IEFNSIWVSHVESYTPPFDVVYTGNP 103 (174)
T ss_pred cchHHHHHHHHHHhCCCCCEEEECCh
Confidence 12222233333 6688988864
No 97
>PRK07143 hypothetical protein; Provisional
Probab=98.80 E-value=6.2e-08 Score=93.67 Aligned_cols=100 Identities=19% Similarity=0.300 Sum_probs=79.3
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCCCCcEEEcCCC---
Q 017744 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPW--- 331 (366)
Q Consensus 255 ~~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~~~--- 331 (366)
....|++-|.||-+|.||..+|++|++.++.++|...+++... .+++..++++++||...++++. +|.+++.++.
T Consensus 14 ~~~~vvaiG~FDGvH~GHq~Ll~~a~~~~~~~vV~tF~~P~~~-~~~~~~~l~~~~er~~~l~~~G-vd~~~~~~F~~~~ 91 (279)
T PRK07143 14 FEKPTFVLGGFESFHLGHLELFKKAKESNDEIVIVIFKNPENL-PKNTNKKFSDLNSRLQTLANLG-FKNIILLDFNEEL 91 (279)
T ss_pred CCCeEEEEccCCcCCHHHHHHHHHHHHCCCcEEEEEeCChHHh-cccCcccCCCHHHHHHHHHHCC-CCEEEEeCCCHHH
Confidence 3567999999999999999999999999999999888775432 2233357999999999999985 6888876542
Q ss_pred --CchHHHHHH---cCCcEEEECCCCCCCC
Q 017744 332 --EVTKDMITT---FNICLVVHGTVSETNT 356 (366)
Q Consensus 332 --~~~~d~i~~---~~~~~vv~G~~~~~~~ 356 (366)
-...+|++. ++++.+|.|.|+.-+.
T Consensus 92 a~ls~e~Fi~~ll~l~~~~iVvG~Df~FG~ 121 (279)
T PRK07143 92 QNLSGNDFIEKLTKNQVSFFVVGKDFRFGK 121 (279)
T ss_pred hCCCHHHHHHHHHhcCCCEEEECCCcccCC
Confidence 134667766 7999999999998543
No 98
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=98.77 E-value=3.2e-08 Score=89.30 Aligned_cols=67 Identities=15% Similarity=0.170 Sum_probs=51.4
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc-CCC--CcEEEcC
Q 017744 256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYV--DEVIIGA 329 (366)
Q Consensus 256 ~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~V--d~Vvi~~ 329 (366)
+++++++|||||+|.||+.+++++ ...|+|++..+.. +..| ++..+.++|+.|++.+ +.. +++.+..
T Consensus 2 ~~i~ifGGSFDP~H~GHl~ia~~~-~~~d~v~~vP~~~---~~~~---k~~~~~~~R~~M~~~ai~~~~~~~~~v~~ 71 (174)
T PRK08887 2 KKIAVFGSAFNPPSLGHKSVIESL-SHFDLVLLVPSIA---HAWG---KTMLDYETRCQLVDAFIQDLGLSNVQRSD 71 (174)
T ss_pred CeEEEeCCCCCCCCHHHHHHHHHh-hcCCEEEEEECCC---Cccc---CCCCCHHHHHHHHHHHHhccCCCceEEeh
Confidence 478999999999999999999996 5789998886542 1222 3678999999999865 543 4666643
No 99
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=98.76 E-value=8.7e-09 Score=99.67 Aligned_cols=109 Identities=20% Similarity=0.230 Sum_probs=80.7
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhc-CC--CCCCcHHHHHHHHhcCccccEEEecCCcccc-H
Q 017744 67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KG--PPVLSMEERLALVSGLKWVDEVIANAPYAIT-E 142 (366)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~-K~--~pi~t~eER~~ll~~~~~VD~vv~~~p~~~~-~ 142 (366)
-|.++|+ +|.||+.+|++|++.++.++|.+...+.-... .. +.+.|.++|.++++.+ +||.++....-++. +
T Consensus 26 ~v~tmG~---lH~GH~~Li~~a~~~a~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~-GvD~v~~p~~~~myp~ 101 (281)
T PRK00380 26 LVPTMGA---LHEGHLSLVREARAEADIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA-GVDLVFAPSVEEMYPQ 101 (281)
T ss_pred EEEccCc---eeHHHHHHHHHHHHhCCEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc-CCCEEEeCCHHHCCCc
Confidence 4567777 99999999999999998777777766643221 12 4688999999999998 99999874222222 2
Q ss_pred HHHHHHhhccCccEEEEcC----------------------CC-CCCCCCCchHHHHHhCC
Q 017744 143 QFMNRLFNEHKIDYIIHGD----------------------DP-CLLPDGTDAYALAKKVG 180 (366)
Q Consensus 143 eFl~~ll~~l~~d~VV~G~----------------------D~-~fg~~g~~~~~~lk~~g 180 (366)
+|...++.. ++..++.|. |+ .||.++.+....+++.+
T Consensus 102 ~f~~~i~~~-~~~~vl~G~~RpghF~Gv~tvv~kLf~iv~Pd~a~FG~kd~qq~~~l~~~~ 161 (281)
T PRK00380 102 GLQTYVSVP-GLSDVLEGASRPGHFRGVATVVTKLFNIVQPDVAYFGEKDYQQLAVIRRMV 161 (281)
T ss_pred cceeEEEcc-cccccccCCCCCccccchhhHHHHHhhccCCCeeEECCCcchhHHHHHHHH
Confidence 454332222 277899999 99 99999999988888765
No 100
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=98.75 E-value=1.1e-08 Score=84.33 Aligned_cols=57 Identities=23% Similarity=0.280 Sum_probs=49.4
Q ss_pred EEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcC
Q 017744 68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126 (366)
Q Consensus 68 V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~ 126 (366)
+++.|+||++|.||+.++++|+++++.+++++..++.... ..++.+.++|.++++++
T Consensus 2 ~~~~G~Fdp~H~GH~~l~~~a~~~~d~~i~~i~~~~~~~~--~~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 2 ARFPGEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPVKV--WQDPHELEERKESIEED 58 (105)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHhCCcEEEEEcCCCcccc--cCChHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999988775432 23689999999999985
No 101
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=98.74 E-value=4.1e-08 Score=90.08 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=50.2
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcC
Q 017744 66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126 (366)
Q Consensus 66 ~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~ 126 (366)
...+++|-|.++|.||..+|++|.+.||+|+|++.|...-... +.-+|..||.+|++..
T Consensus 5 d~~v~iGRFQPfH~GHl~~I~~al~~~devII~IGSA~~s~t~--~NPFTa~ER~~MI~~a 63 (196)
T PRK13793 5 DYLVFIGRFQPFHLAHMQTIEIALQQSRYVILALGSAQMERNI--KNPFLAIEREQMILSN 63 (196)
T ss_pred eEEEEEecCCCCcHHHHHHHHHHHHhCCEEEEEEccCCCCCCC--CCCCCHHHHHHHHHHh
Confidence 4689999999999999999999999999999999996642221 4457899999999974
No 102
>PRK13671 hypothetical protein; Provisional
Probab=98.70 E-value=6.4e-08 Score=94.18 Aligned_cols=89 Identities=25% Similarity=0.421 Sum_probs=70.2
Q ss_pred EecccCcCCHHHHHHHHHHHHh--CCeeEEEEccchhhhhcCC-CCCCcHHHHHHHHhcCccccEEEecCCcccc----H
Q 017744 70 MDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKG-PPVLSMEERLALVSGLKWVDEVIANAPYAIT----E 142 (366)
Q Consensus 70 ~~G~FD~lH~GH~~lL~qAk~l--gd~LvVgv~sd~~i~~~K~-~pi~t~eER~~ll~~~~~VD~vv~~~p~~~~----~ 142 (366)
++-.||++|.||..++++|++. +|.+++.+..++ ..|+ +.+++.++|++|++.+ +||.|++ -|+.+. +
T Consensus 5 IIaeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~---~qrg~pa~~~~~~R~~ma~~~-G~DLViE-LP~~~a~~sAe 79 (298)
T PRK13671 5 IIAEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKY---TQRGEIAVASFEKRKKIALKY-GVDKVIK-LPFEYATQAAH 79 (298)
T ss_pred EEeeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCC---CCCCCCCCCCHHHHHHHHHHc-CCCEEEe-ccHHHHhhchH
Confidence 4557999999999999999997 488888776665 3455 6677999999999998 9999997 454333 2
Q ss_pred HHHH---HHhhccCccEEEEcCCC
Q 017744 143 QFMN---RLFNEHKIDYIIHGDDP 163 (366)
Q Consensus 143 eFl~---~ll~~l~~d~VV~G~D~ 163 (366)
.|-. .++.++++|.++.|..+
T Consensus 80 ~FA~gaV~lL~~lgvd~l~FGsE~ 103 (298)
T PRK13671 80 IFAKGAIKKLNKEKIDKLIFGSES 103 (298)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCC
Confidence 4432 37788999999999775
No 103
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=98.69 E-value=3.5e-08 Score=90.53 Aligned_cols=60 Identities=20% Similarity=0.351 Sum_probs=51.6
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc
Q 017744 256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC 319 (366)
Q Consensus 256 ~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~ 319 (366)
..++++.|.|.|||.||+++|++|.+.+|+|||||.|.......| +|+ +..||..|+...
T Consensus 4 yd~~v~iGRFQPfH~GHl~~I~~al~~~devII~IGSA~~s~t~~---NPF-Ta~ER~~MI~~a 63 (196)
T PRK13793 4 FDYLVFIGRFQPFHLAHMQTIEIALQQSRYVILALGSAQMERNIK---NPF-LAIEREQMILSN 63 (196)
T ss_pred eeEEEEEecCCCCcHHHHHHHHHHHHhCCEEEEEEccCCCCCCCC---CCC-CHHHHHHHHHHh
Confidence 467899999999999999999999999999999999976544433 565 899999888876
No 104
>PRK13671 hypothetical protein; Provisional
Probab=98.68 E-value=6.6e-08 Score=94.10 Aligned_cols=87 Identities=18% Similarity=0.279 Sum_probs=69.8
Q ss_pred CccccCChHHHHHHHHHHhc--CCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCCCCcEEEcCC-CCc------
Q 017744 263 GAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAP-WEV------ 333 (366)
Q Consensus 263 GsFD~~h~GHi~~L~~A~~~--gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~~-~~~------ 333 (366)
-+|||||.||+.++++|++. .|.+|+....|. ..||. .++++.++|++|++.+ +||-|+--+. +.+
T Consensus 7 aeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~---~qrg~-pa~~~~~~R~~ma~~~-G~DLViELP~~~a~~sAe~F 81 (298)
T PRK13671 7 AEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKY---TQRGE-IAVASFEKRKKIALKY-GVDKVIKLPFEYATQAAHIF 81 (298)
T ss_pred eeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCC---CCCCC-CCCCCHHHHHHHHHHc-CCCEEEeccHHHHhhchHHH
Confidence 37999999999999999997 588888777664 45665 5677999999999998 7998884221 111
Q ss_pred ---hHHHHHHcCCcEEEECCCCCC
Q 017744 334 ---TKDMITTFNICLVVHGTVSET 354 (366)
Q Consensus 334 ---~~d~i~~~~~~~vv~G~~~~~ 354 (366)
.+..+.++++|.++-|.++.+
T Consensus 82 A~gaV~lL~~lgvd~l~FGsE~~d 105 (298)
T PRK13671 82 AKGAIKKLNKEKIDKLIFGSESND 105 (298)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCC
Confidence 467889999999999999865
No 105
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.67 E-value=2.6e-07 Score=91.54 Aligned_cols=129 Identities=21% Similarity=0.183 Sum_probs=86.7
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcC-ccccEE--EecCCcccc
Q 017744 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVDEV--IANAPYAIT 141 (366)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~-~~VD~v--v~~~p~~~~ 141 (366)
.++++..|+||++|.||+.++++|.+++|.++|.|... + +++++.++|++|++.. +..+.| +...+|-++
T Consensus 139 ~~i~~~~g~fdP~t~GH~~li~~A~~~~d~~~v~v~~~------~-~~~f~~~~R~~~v~~~~~~~~nv~v~~~~~~~is 211 (332)
T TIGR00124 139 NKIGSIVMNANPFTNGHRYLIEQAARQCDWLHLFVVKE------D-ASLFSYDERFALVKQGIQDLSNVTVHNGSAYIIS 211 (332)
T ss_pred CcEEEEEeCcCCCchHHHHHHHHHHHHCCEEEEEEEeC------C-CCCCCHHHHHHHHHHHhcCCCCEEEEecCCceec
Confidence 46799999999999999999999999999999988532 2 5799999999999852 122211 222223111
Q ss_pred H------------------------HHHHHHhhccCccEEEEcCCCCCCCCCCchHHH-HH---------hCCeEEEecc
Q 017744 142 E------------------------QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYAL-AK---------KVGRYKQIKR 187 (366)
Q Consensus 142 ~------------------------eFl~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~-lk---------~~g~~~~v~r 187 (366)
. -|-+.+...+++..-.+|..+..-. ...|+. ++ ..-+..+++|
T Consensus 212 ~atfp~yflk~~~~~~~~~~~ld~~~f~~~ia~~l~i~~r~vg~ep~~~~--t~~yn~~m~~~~~~~~~~~~I~~~~I~R 289 (332)
T TIGR00124 212 RATFPAYFLKEQDVADDCYTEIDLKLFRYKIAPALGITHRFVGTEPLCPV--TALYNQKMKYWLEEPNDAPPIEVVEIQR 289 (332)
T ss_pred cccchhhhcCChhHHHHHHHHHHHHHHHHhchHhhCCccceeCCCCCCHh--HHHHHHHHHHhhhccCCCCCcEEEEEee
Confidence 0 2222344567888888998875432 123442 22 1224677777
Q ss_pred ----CCCCCHHHHHHHHHh
Q 017744 188 ----TEGVSSTDIVGRILS 202 (366)
Q Consensus 188 ----~~~vSST~Ir~rI~~ 202 (366)
+.-+|.|.||+.|.+
T Consensus 290 ~~~~~~~~SASaIR~~L~~ 308 (332)
T TIGR00124 290 KLAAGGPISASTVRELLAK 308 (332)
T ss_pred ecCCCCeeCHHHHHHHHHc
Confidence 235899999999964
No 106
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=98.59 E-value=1.6e-07 Score=85.79 Aligned_cols=89 Identities=17% Similarity=0.126 Sum_probs=61.4
Q ss_pred EEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCchhhcccCCCCCCCCHHHHHHHHH-hcCCCCcEEEcCC------
Q 017744 260 YIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAP------ 330 (366)
Q Consensus 260 ~~~GsFD~~h~GHi~~L~~A~~~g--d~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vvi~~~------ 330 (366)
++.|||||+|.||+.+++.|++.+ |.+++..+.+. ..|.. ....+.++|++|++ +++..+.+.+...
T Consensus 1 i~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~---p~k~~-~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~ 76 (193)
T TIGR00482 1 LFGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANP---PHKKT-YEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGG 76 (193)
T ss_pred CccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCC---CCCCC-CCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCC
Confidence 368999999999999999999875 67777666553 34532 35579999999998 5577777766521
Q ss_pred CCchHH---HHHHcCCc---EEEECCCC
Q 017744 331 WEVTKD---MITTFNIC---LVVHGTVS 352 (366)
Q Consensus 331 ~~~~~d---~i~~~~~~---~vv~G~~~ 352 (366)
...|.+ .+++.-++ +++.|.|.
T Consensus 77 ~syT~~tl~~l~~~~p~~~~~~iiG~D~ 104 (193)
T TIGR00482 77 PSYTIDTLKHLKKKYPDVELYFIIGADA 104 (193)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEEEcHHH
Confidence 123444 44443444 67888654
No 107
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.59 E-value=1.2e-07 Score=92.56 Aligned_cols=93 Identities=14% Similarity=0.164 Sum_probs=73.5
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc-CCCCcEEEcCCCCc
Q 017744 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVIIGAPWEV 333 (366)
Q Consensus 255 ~~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd~Vvi~~~~~~ 333 (366)
.++++-+.|+|||+|.||+.++++|.+.+|.++|.+... + .+.++.++|+++++.. +..+.+.+..+.++
T Consensus 113 ~~~~~~~~~~FDPiH~GHl~ii~~a~~~~d~~~V~i~~~------~---~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~l 183 (297)
T cd02169 113 GKKIAAIVMNANPFTLGHRYLVEKAAAENDWVHLFVVSE------D---KSLFSFADRFKLVKKGTKHLKNVTVHSGGDY 183 (297)
T ss_pred CCceEEEEecCCCCchHHHHHHHHHHhhCCeEEEEEEcC------C---CCCCCHHHHHHHHHHHhCCCCCEEEEecCCe
Confidence 358899999999999999999999999999999988643 2 4788999999998876 66666666544433
Q ss_pred h--------------------------HHHH----HHcCCcEEEECCCCCCCC
Q 017744 334 T--------------------------KDMI----TTFNICLVVHGTVSETNT 356 (366)
Q Consensus 334 ~--------------------------~d~i----~~~~~~~vv~G~~~~~~~ 356 (366)
+ .+|+ +++++..+|-|.|+.-+.
T Consensus 184 ~v~~~~~~~~~~~~~~~~~~~~a~lsa~~Fi~iL~~~l~~~~ivvG~Df~FG~ 236 (297)
T cd02169 184 IISSATFPSYFIKEQDVVIKAQTALDARIFRKYIAPALNITKRYVGEEPFSRV 236 (297)
T ss_pred eeccccChhhhcCChhHHHHHHhcCCHHHHHHHHHHHcCCcEEEEcCCCCCCC
Confidence 2 2343 457999999999987654
No 108
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=98.51 E-value=3.6e-07 Score=90.70 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=65.5
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhc--CCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHh-cCCCCcEEEcCC--
Q 017744 256 ARVVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAP-- 330 (366)
Q Consensus 256 ~~~v~~~GsFD~~h~GHi~~L~~A~~~--gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~-~~~Vd~Vvi~~~-- 330 (366)
|++++++|||||+|.||+.+++.|.+. .|++++..+.+ +..|.. .+..+.++|++|++. ++..+.+.+...
T Consensus 1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~---~p~K~~-~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~ 76 (342)
T PRK07152 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYI---NPFKKK-QKASNGEHRLNMLKLALKNLPKMEVSDFEI 76 (342)
T ss_pred CeEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCC---CCCCCC-CCCCCHHHHHHHHHHHHhhCCCeEEeHHHH
Confidence 578999999999999999999999976 58888777644 244532 345566999999864 466667666321
Q ss_pred ----CC---chHHHHHHcCCc---EEEECCCCC
Q 017744 331 ----WE---VTKDMITTFNIC---LVVHGTVSE 353 (366)
Q Consensus 331 ----~~---~~~d~i~~~~~~---~vv~G~~~~ 353 (366)
.. .|.+.+++.-|+ +++.|.|.-
T Consensus 77 ~~~~~syt~~tl~~l~~~~p~~~~~~iiG~D~~ 109 (342)
T PRK07152 77 KRQNVSYTIDTIKYFKKKYPNDEIYFIIGSDNL 109 (342)
T ss_pred hCCCCCcHHHHHHHHHHhCCCCcEEEEecHHHh
Confidence 12 244445554454 778896654
No 109
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=98.51 E-value=5.5e-07 Score=81.98 Aligned_cols=84 Identities=14% Similarity=0.163 Sum_probs=64.8
Q ss_pred ccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc-CCCCcEEEcCCCCc---------
Q 017744 264 AFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVIIGAPWEV--------- 333 (366)
Q Consensus 264 sFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd~Vvi~~~~~~--------- 333 (366)
+|||+|.||++++++|.+.+|.++|.+.+. + .+.++.++|.+|++.. +..++|.+....++
T Consensus 7 ~~DPiH~GHl~i~~~a~~~~d~~~V~v~p~------~---~~~~s~e~R~~Mi~~a~~~~~~v~v~~~~~~~v~~~~~~~ 77 (182)
T smart00764 7 NANPFTLGHRYLVEQAAAECDWVHLFVVSE------D---ASLFSFDERFALVKKGTKDLDNVTVHSGSDYIISRATFPS 77 (182)
T ss_pred CCCCCCHHHHHHHHHHHHHCCceEEEEEeC------C---CCCCCHHHHHHHHHHHhccCCCEEEEecCCceeccccChh
Confidence 699999999999999999999999999754 2 3677999999998876 66665555433222
Q ss_pred -----------------hHHHH----HHcCCcEEEECCCCCCCC
Q 017744 334 -----------------TKDMI----TTFNICLVVHGTVSETNT 356 (366)
Q Consensus 334 -----------------~~d~i----~~~~~~~vv~G~~~~~~~ 356 (366)
..+|+ +++++..++-|.|+.-+.
T Consensus 78 ~~~~~~~~~~~~~a~lsa~~Fi~~L~~~l~~~~ivvG~df~FG~ 121 (182)
T smart00764 78 YFLKEQDVVIKSQTTLDLRIFRKYIAPALGITHRYVGEEPFSPV 121 (182)
T ss_pred hhcCchhHHHHHHhcCCHHHHHHHHHHHcCceEEEEcCCCCCCC
Confidence 23444 468999999999988664
No 110
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Probab=98.50 E-value=3.4e-07 Score=85.70 Aligned_cols=138 Identities=24% Similarity=0.278 Sum_probs=87.5
Q ss_pred hcccCCCCCeEEEEecccCcCCHHHHHHHHHHHHhC-CeeEEEEccchhhhhcCC-CCCCcHHHHHHHHhc----Ccc--
Q 017744 57 KKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKG-PPVLSMEERLALVSG----LKW-- 128 (366)
Q Consensus 57 ~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~lg-d~LvVgv~sd~~i~~~K~-~pi~t~eER~~ll~~----~~~-- 128 (366)
.+.++.++..++..+|+||-+|.||.-+|..|..++ ++++|||+.|+.+.+.+- ..+-|.++|++.+.. ++.
T Consensus 134 e~~~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~kK~~~Eliepie~R~~~V~~Fl~~IKp~l 213 (293)
T KOG3351|consen 134 EKSGPANKFMVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKKKVLKELIEPIEERKEHVSNFLKSIKPDL 213 (293)
T ss_pred ccccchhcceeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHHhHHHHHhhhHHHHHHHHHHHHHhcCCCc
Confidence 334455666789999999999999999999999998 899999998887644222 578999999998875 221
Q ss_pred -ccEEEecCCccccHHHHHHHhhccCccEEEEcCCCCCCCCCCchHHHHHhCCe--EEEecc---CCCCCHHHHHHHHH
Q 017744 129 -VDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR--YKQIKR---TEGVSSTDIVGRIL 201 (366)
Q Consensus 129 -VD~vv~~~p~~~~~eFl~~ll~~l~~d~VV~G~D~~fg~~g~~~~~~lk~~g~--~~~v~r---~~~vSST~Ir~rI~ 201 (366)
++.+=+-.||..+.. .-..+.+|+...-..|.........-+...+ +..++- .+.+|+|++++...
T Consensus 214 ~~~~vpi~Dp~GPt~~-------d~elE~lVVS~ET~~Ga~aVNr~R~E~glseLai~vVell~~~~kls~t~~~~~kv 285 (293)
T KOG3351|consen 214 NVRVVPIHDPFGPTIT-------DPELEALVVSEETKTGATAVNRKRVERGLSELAIYVVELLYDAQKLSSTENRELKV 285 (293)
T ss_pred eEEEEecccCCCCCcc-------CCcceEEEEeeccccchhhhhHHHHHcCCchheEEEEeeccChhhcchhHHHHhhh
Confidence 222223345544321 1246678887766555433221111111122 333333 34589999887654
No 111
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=98.47 E-value=2.4e-07 Score=83.17 Aligned_cols=61 Identities=23% Similarity=0.254 Sum_probs=52.3
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc
Q 017744 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC 319 (366)
Q Consensus 255 ~~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~ 319 (366)
+++.+++-|.|-|+|.||+.++++|.+..|.|||+|.||+.-...| +| |+..||..|++.+
T Consensus 2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~vDeliI~iGSa~~~~t~~---nP-fTagER~~mi~~~ 62 (172)
T COG1056 2 RMKRGVYFGRFQPLHTGHLYVIKRALSKVDELIIVIGSAQESHTLK---NP-FTAGERIPMIRDR 62 (172)
T ss_pred CceEEEEEeccCCccHhHHHHHHHHHHhCCEEEEEEccCccccccc---CC-CCccchhHHHHHH
Confidence 4688999999999999999999999999999999999997644433 45 4888999888854
No 112
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=98.43 E-value=4.6e-07 Score=89.48 Aligned_cols=58 Identities=24% Similarity=0.172 Sum_probs=49.2
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhc-CCCCCCcHHHHHHHHhcC
Q 017744 66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KGPPVLSMEERLALVSGL 126 (366)
Q Consensus 66 ~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~-K~~pi~t~eER~~ll~~~ 126 (366)
+++++.|+||++|.||+.++++|.+++|+|+|++.+.. ++ |..+..+.++|+++++..
T Consensus 2 ~i~i~~GsFdP~H~GHl~ii~~a~~~~d~v~v~~~~~~---~~~~~~~~~~~~~R~~~l~~~ 60 (325)
T TIGR01526 2 TIGVVFGKFYPLHTGHIYLIYEAFSKVDELHIVVGSLF---YDSKAKRPPPVQDRLRWLREI 60 (325)
T ss_pred cEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCC---cCccCCCCCCHHHHHHHHHHH
Confidence 47899999999999999999999999999999987632 22 336788999999999853
No 113
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=98.36 E-value=1.6e-06 Score=79.91 Aligned_cols=95 Identities=15% Similarity=0.124 Sum_probs=65.4
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcCC--EEEEEEecCchhhcccCCCCCCCCHHHHHHHHH-hcCCCCcEEEcC--
Q 017744 255 NARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGA-- 329 (366)
Q Consensus 255 ~~~~v~~~GsFD~~h~GHi~~L~~A~~~gd--~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vvi~~-- 329 (366)
.++++++.|||||+|.||+.+.++|.+..+ .|+.-.+. .+.+|.+ ++.-+.++|..|++ +++..+...+.+
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~---~~p~k~~-~~~a~~~~R~~Ml~la~~~~~~~~v~~~e 77 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSP---VPPHKKK-KELASAEHRLAMLELAIEDNPRFEVSDRE 77 (197)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCC---CCCCCCC-ccCCCHHHHHHHHHHHHhcCCCcceeHHH
Confidence 578999999999999999999999998874 44444332 2345543 57999999998887 457666533321
Q ss_pred ----CCC---chHHHHH-HcCCcE---EEECCCCC
Q 017744 330 ----PWE---VTKDMIT-TFNICL---VVHGTVSE 353 (366)
Q Consensus 330 ----~~~---~~~d~i~-~~~~~~---vv~G~~~~ 353 (366)
... .|.+.++ +.++|. +|-|.|.-
T Consensus 78 ~~r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l 112 (197)
T COG1057 78 IKRGGPSYTIDTLEHLRQEYGPDVELYFIIGADNL 112 (197)
T ss_pred HHcCCCcchHHHHHHHHHHhCCCCcEEEEEehHHh
Confidence 112 3444444 677883 88887643
No 114
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=98.33 E-value=3.1e-06 Score=80.40 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=47.6
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc
Q 017744 255 NARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC 319 (366)
Q Consensus 255 ~~~~v~~~GsFD~~h~GHi~~L~~A~~~g--d~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~ 319 (366)
.++++++.|||||+|.||+.+.+.|.+.. |.+++..+.+. ..| .+..+.++|++|++..
T Consensus 21 ~~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~p---p~K---~~~~~~~~Rl~M~~lA 81 (243)
T PRK06973 21 PRRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQP---WQK---ADVSAAEHRLAMTRAA 81 (243)
T ss_pred CceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcC---CCC---CCCCCHHHHHHHHHHH
Confidence 35799999999999999999999998764 78877776552 334 4678999999998743
No 115
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=98.33 E-value=3.5e-06 Score=75.75 Aligned_cols=60 Identities=23% Similarity=0.316 Sum_probs=50.6
Q ss_pred CCeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhc
Q 017744 64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125 (366)
Q Consensus 64 ~~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~ 125 (366)
++.+.+..|-|-++|.||+.+++.|.+..|+|+|++.|+..-... +--+|..||..|++.
T Consensus 2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~vDeliI~iGSa~~~~t~--~nPfTagER~~mi~~ 61 (172)
T COG1056 2 RMKRGVYFGRFQPLHTGHLYVIKRALSKVDELIIVIGSAQESHTL--KNPFTAGERIPMIRD 61 (172)
T ss_pred CceEEEEEeccCCccHhHHHHHHHHHHhCCEEEEEEccCcccccc--cCCCCccchhHHHHH
Confidence 456899999999999999999999999999999999998753221 345778999999884
No 116
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=98.18 E-value=6.3e-06 Score=77.40 Aligned_cols=81 Identities=15% Similarity=0.069 Sum_probs=52.5
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcCC--E--EEEEEe-cCchhhcccCCCCCCCCHHHHHHHHH-hcCCCCcEEEcCCC
Q 017744 258 VVYIDGAFDLFHAGHVEILKKARQLGD--F--LLVGIY-TDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAPW 331 (366)
Q Consensus 258 ~v~~~GsFD~~h~GHi~~L~~A~~~gd--~--LiVgV~-sD~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vvi~~~~ 331 (366)
+.+++|||||+|.||+.+++.|.+.++ . .+|.+. .=...+..| .+..+.++|+.|++ ++...+.+.+...+
T Consensus 2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~~k---~~~~~~~~Rl~Ml~lai~~~~~~~v~~~E 78 (225)
T cd09286 2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAYGK---KGLASAKHRVAMCRLAVQSSDWIRVDDWE 78 (225)
T ss_pred EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccCCCC---CCCCCHHHHHHHHHHHHccCCCEEEEehh
Confidence 568899999999999999999987764 2 122211 100111223 47889999999997 56777776665432
Q ss_pred ------CchHHHHHHc
Q 017744 332 ------EVTKDMITTF 341 (366)
Q Consensus 332 ------~~~~d~i~~~ 341 (366)
..|.+.++.+
T Consensus 79 ~~~~~~syT~~TL~~l 94 (225)
T cd09286 79 SLQPEWMRTAKVLRHH 94 (225)
T ss_pred ccCCccccHHHHHHHH
Confidence 2355555554
No 117
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=98.18 E-value=7.4e-06 Score=72.84 Aligned_cols=101 Identities=22% Similarity=0.242 Sum_probs=65.4
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcC---C--EEEEEEecCch--hhcccCCCCCCCCHHHHHHHHHhcCCCCcEEE
Q 017744 255 NARVVYIDGAFDLFHAGHVEILKKARQLG---D--FLLVGIYTDQI--VSEHRGSYHPIMHLHERSLSVLACRYVDEVII 327 (366)
Q Consensus 255 ~~~~v~~~GsFD~~h~GHi~~L~~A~~~g---d--~LiVgV~sD~~--v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi 327 (366)
.++.+++=|.||=+|.||..+|++|.+.+ + -+++....++. .++.+ ....+++.+||...++++. ||.+++
T Consensus 4 ~~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~-~~~~l~s~~ek~~~l~~~G-vd~~~~ 81 (157)
T PF06574_consen 4 NKKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDK-PPKLLTSLEEKLELLESLG-VDYVIV 81 (157)
T ss_dssp -S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTC-CGGBSS-HHHHHHHHHHTT-ESEEEE
T ss_pred CCCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCC-cccCCCCHHHHHHHHHHcC-CCEEEE
Confidence 45789999999999999999999998876 3 23444443331 22112 2256999999999999974 888888
Q ss_pred cCCC-----CchHHHHHH-----cCCcEEEECCCCCCCCc
Q 017744 328 GAPW-----EVTKDMITT-----FNICLVVHGTVSETNTP 357 (366)
Q Consensus 328 ~~~~-----~~~~d~i~~-----~~~~~vv~G~~~~~~~~ 357 (366)
.++. -...+|++. +++..+|-|.|+.-+.+
T Consensus 82 ~~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~~ 121 (157)
T PF06574_consen 82 IPFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGKN 121 (157)
T ss_dssp E-CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESGG
T ss_pred ecchHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCCC
Confidence 6542 245677775 78999999999986554
No 118
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Probab=98.13 E-value=3.3e-06 Score=79.21 Aligned_cols=100 Identities=30% Similarity=0.399 Sum_probs=70.5
Q ss_pred CCCCCCCeEEEEcCccccCChHHHHHHHHHHhcC-CEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc----CC---
Q 017744 250 KGPGPNARVVYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC----RY--- 321 (366)
Q Consensus 250 ~~~~~~~~~v~~~GsFD~~h~GHi~~L~~A~~~g-d~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~----~~--- 321 (366)
.+|..+..++.+.||||-+|.||--+|..|..++ |.|||||+.|+.+.+.+-+ .-+-+.+||++-+..+ +.
T Consensus 136 ~~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~kK~~~-Eliepie~R~~~V~~Fl~~IKp~l~ 214 (293)
T KOG3351|consen 136 SGPANKFMVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKKKVLK-ELIEPIEERKEHVSNFLKSIKPDLN 214 (293)
T ss_pred ccchhcceeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHHhHHH-HHhhhHHHHHHHHHHHHHhcCCCce
Confidence 3444456689999999999999999999999987 8999999999887654322 4577999999766654 32
Q ss_pred CCcEEEcCCCCchHHHHHHcCCcEEEECCCCC
Q 017744 322 VDEVIIGAPWEVTKDMITTFNICLVVHGTVSE 353 (366)
Q Consensus 322 Vd~Vvi~~~~~~~~d~i~~~~~~~vv~G~~~~ 353 (366)
|+-|=+-+|++.+ +..-..+.+|-..+-.
T Consensus 215 ~~~vpi~Dp~GPt---~~d~elE~lVVS~ET~ 243 (293)
T KOG3351|consen 215 VRVVPIHDPFGPT---ITDPELEALVVSEETK 243 (293)
T ss_pred EEEEecccCCCCC---ccCCcceEEEEeeccc
Confidence 3333445677754 2334555555554443
No 119
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=98.05 E-value=2.2e-05 Score=74.25 Aligned_cols=95 Identities=15% Similarity=0.255 Sum_probs=58.4
Q ss_pred CCCeEEEEcCccccCChHHHHHHHHHHhcC--C-EEEEEEecCch-hhcccCCCCCCCCHHHHHHHHH-hcCCCCcEEE-
Q 017744 254 PNARVVYIDGAFDLFHAGHVEILKKARQLG--D-FLLVGIYTDQI-VSEHRGSYHPIMHLHERSLSVL-ACRYVDEVII- 327 (366)
Q Consensus 254 ~~~~~v~~~GsFD~~h~GHi~~L~~A~~~g--d-~LiVgV~sD~~-v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vvi- 327 (366)
....+.++.|||||+|.||+.+++.|.+.. | ..+|++.--.. ....| ....+.++|++|++ ++...+.+.+
T Consensus 20 ~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k---~~~~~~~~Rl~Ml~lai~~~~~~~V~ 96 (236)
T PLN02945 20 RTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKK---KGLASAEHRIQMCQLACEDSDFIMVD 96 (236)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCccccc---CCCCCHHHHHHHHHHHhcCCCCeEec
Confidence 345678999999999999999999887654 3 33443322211 11123 35779999999986 5555444443
Q ss_pred ----cCC-CCchHHHHHHc---C--------Cc---EEEECCC
Q 017744 328 ----GAP-WEVTKDMITTF---N--------IC---LVVHGTV 351 (366)
Q Consensus 328 ----~~~-~~~~~d~i~~~---~--------~~---~vv~G~~ 351 (366)
..+ ...|.+.++.+ - ++ +++.|.|
T Consensus 97 ~~E~~~~~~syT~dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D 139 (236)
T PLN02945 97 PWEARQSTYQRTLTVLARVETSLNNNGLASEESVRVMLLCGSD 139 (236)
T ss_pred HHHhCCCCCccHHHHHHHHHHHhccccccCCCCceEEEEechh
Confidence 211 23456665333 1 23 6888977
No 120
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=97.93 E-value=4.9e-05 Score=73.99 Aligned_cols=96 Identities=14% Similarity=0.132 Sum_probs=67.1
Q ss_pred EEEcCccccCChHHHHHHHHHHhcC-----CEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCCCCcEEEcCCC--
Q 017744 259 VYIDGAFDLFHAGHVEILKKARQLG-----DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPW-- 331 (366)
Q Consensus 259 v~~~GsFD~~h~GHi~~L~~A~~~g-----d~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~~~-- 331 (366)
+++-|.||-+|.||..+|++|++.+ ...++....++..--...+..++++.+||...++++. ||.+++..+.
T Consensus 1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~G-vd~~~~~~F~~~ 79 (288)
T TIGR00083 1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIKG-VEQLLVVVFDEE 79 (288)
T ss_pred CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHcC-CCEEEEeCCCHH
Confidence 3667999999999999999888654 3455555544322111111123899999999999985 8988886542
Q ss_pred ---CchHHHHH-----HcCCcEEEECCCCCCC
Q 017744 332 ---EVTKDMIT-----TFNICLVVHGTVSETN 355 (366)
Q Consensus 332 ---~~~~d~i~-----~~~~~~vv~G~~~~~~ 355 (366)
-...+|++ ++++..+|.|.|+.-+
T Consensus 80 ~a~ls~e~Fi~~~l~~~l~~~~ivvG~Df~FG 111 (288)
T TIGR00083 80 FANLSALQFIDQLIVKHLHVKFLVVGDDFRFG 111 (288)
T ss_pred HHcCCHHHHHHHHHHhccCCcEEEECCCccCC
Confidence 13345553 4789999999999854
No 121
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=97.93 E-value=8.7e-05 Score=66.90 Aligned_cols=122 Identities=20% Similarity=0.237 Sum_probs=83.7
Q ss_pred ccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhc----------CccccEEEecCCcc---
Q 017744 73 CFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG----------LKWVDEVIANAPYA--- 139 (366)
Q Consensus 73 ~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~----------~~~VD~vv~~~p~~--- 139 (366)
+-.++++||+-|+++|.+.+|.|.|-|.+.+ ..+++.++|++|++. +.+-|++|..+.|.
T Consensus 7 NaNPFT~GH~yLiE~Aa~~~d~l~vFVV~eD-------~S~Fpf~~R~~LVk~G~~~L~NV~V~~~g~YiIS~aTFPsYF 79 (182)
T PF08218_consen 7 NANPFTLGHRYLIEQAAKECDWLHVFVVSED-------RSLFPFADRYELVKEGTADLPNVTVHPGGDYIISSATFPSYF 79 (182)
T ss_pred cCCCCccHHHHHHHHHHHhCCEEEEEEEccc-------cCcCCHHHHHHHHHHHhCcCCCEEEEcCCCeeeecccChhhh
Confidence 4579999999999999999999877776644 468999999999985 22334444443331
Q ss_pred ccH--------------HHHHHHhhccCccEEEEcCCCCCCCCCCchHH-----HHHhC-CeEEEeccC----CCCCHHH
Q 017744 140 ITE--------------QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYA-----LAKKV-GRYKQIKRT----EGVSSTD 195 (366)
Q Consensus 140 ~~~--------------eFl~~ll~~l~~d~VV~G~D~~fg~~g~~~~~-----~lk~~-g~~~~v~r~----~~vSST~ 195 (366)
+.+ -|.+.+...+++..-.+|..+..-.- ..|+ .|... -++.+++|. +.||-|+
T Consensus 80 lK~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~vT--~~YN~~M~~~Lp~~gi~v~ei~R~~~~g~~ISAS~ 157 (182)
T PF08218_consen 80 LKDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSPVT--RIYNEAMKEILPPYGIEVVEIPRKEINGEPISASR 157 (182)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCHHH--HHHHHHHHHhccccCCEEEEEecccCCCcEEcHHH
Confidence 000 23333556789999999988754321 2233 23334 367888884 3599999
Q ss_pred HHHHHHhc
Q 017744 196 IVGRILSS 203 (366)
Q Consensus 196 Ir~rI~~~ 203 (366)
.|+.|.++
T Consensus 158 VR~~l~~~ 165 (182)
T PF08218_consen 158 VRKLLKEG 165 (182)
T ss_pred HHHHHHcC
Confidence 99999865
No 122
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=97.91 E-value=2.2e-05 Score=75.97 Aligned_cols=66 Identities=30% Similarity=0.293 Sum_probs=53.3
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhh-hcCC--CCCCcHHHHHHHHhcCccccEEEec
Q 017744 66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKG--PPVLSMEERLALVSGLKWVDEVIAN 135 (366)
Q Consensus 66 ~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~-~~K~--~pi~t~eER~~ll~~~~~VD~vv~~ 135 (366)
--|.++|+ +|.||+.||++|++.++.++|.+..++.-. +... +.+.+.++|.++++.+ +||.++.+
T Consensus 25 g~VpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~P 93 (282)
T TIGR00018 25 GFVPTMGN---LHDGHMSLIDRAVAENDVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL-GVDVVFAP 93 (282)
T ss_pred EEEECCCc---ccHHHHHHHHHHHHhCCeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc-CCCEEECC
Confidence 34679999 999999999999999998888877766532 2122 4688999999999998 99999873
No 123
>PLN02660 pantoate--beta-alanine ligase
Probab=97.82 E-value=4.2e-05 Score=74.08 Aligned_cols=65 Identities=26% Similarity=0.312 Sum_probs=53.1
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhh-cCC--CCCCcHHHHHHHHhcCccccEEEe
Q 017744 66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIA-NKG--PPVLSMEERLALVSGLKWVDEVIA 134 (366)
Q Consensus 66 ~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~-~K~--~pi~t~eER~~ll~~~~~VD~vv~ 134 (366)
--|.|+|. +|.||+.||++|++.++.++|.+..++.-.. ... +.+.+.++|+++++.+ +||.++.
T Consensus 24 gfVpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~ 91 (284)
T PLN02660 24 ALVPTMGY---LHEGHLSLVRAARARADVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAAL-GVDAVFN 91 (284)
T ss_pred EEEEcCch---hhHHHHHHHHHHHHhCCEEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHc-CCCEEEC
Confidence 45789999 9999999999999999977777777665321 122 4688999999999997 9999986
No 124
>PRK13670 hypothetical protein; Provisional
Probab=97.80 E-value=8.7e-05 Score=75.11 Aligned_cols=86 Identities=21% Similarity=0.289 Sum_probs=63.6
Q ss_pred CccccCChHHHHHHHHHHhcCC-EEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCCCCcEEEcCCC---CchHHHH
Q 017744 263 GAFDLFHAGHVEILKKARQLGD-FLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPW---EVTKDMI 338 (366)
Q Consensus 263 GsFD~~h~GHi~~L~~A~~~gd-~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~~~---~~~~d~i 338 (366)
=-||+||.||..+|++|++.+. .++++|.+-..+.+ |. .++++..+|.++++.+ .||.|+..++. ....+|+
T Consensus 8 aEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qr--g~-p~i~~~~~R~~~a~~~-GvD~vielpf~~a~~sae~F~ 83 (388)
T PRK13670 8 VEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQR--GE-PAIVDKWTRAKMALEN-GVDLVVELPFLYSVQSADFFA 83 (388)
T ss_pred eeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCC--CC-CCCCCHHHHHHHHHHc-CCCEEEEeCCchHhCCHHHHH
Confidence 3599999999999999998642 45666666666544 44 3599999999999997 48888886541 1223344
Q ss_pred -------HHcCCcEEEECCCC
Q 017744 339 -------TTFNICLVVHGTVS 352 (366)
Q Consensus 339 -------~~~~~~~vv~G~~~ 352 (366)
.+++++.+|-|.|.
T Consensus 84 ~~aV~iL~~l~v~~lv~G~e~ 104 (388)
T PRK13670 84 EGAVSILDALGVDSLVFGSES 104 (388)
T ss_pred HhHHHHHHHcCCCEEEEcCCC
Confidence 45899999999993
No 125
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=97.44 E-value=0.00032 Score=70.02 Aligned_cols=88 Identities=23% Similarity=0.259 Sum_probs=62.6
Q ss_pred ecccCcCCHHHHHHHHHHHHhC--CeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCccccEEEecCCccccH---HHH
Q 017744 71 DGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITE---QFM 145 (366)
Q Consensus 71 ~G~FD~lH~GH~~lL~qAk~lg--d~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vv~~~p~~~~~---eFl 145 (366)
+--||++|.||+-+|++|+++. |..++ +-+-..+.+ ..+++.+-.+|.++..+. ++|.|++ .|+.++- +++
T Consensus 7 i~eyNPfHnGH~y~i~~Ar~~~~~d~~i~-~msgdf~qR-gepai~~k~~r~~~aL~~-g~D~VIe-lP~~~s~q~a~~f 82 (358)
T COG1323 7 IAEYNPFHNGHQYHINKAREEFKGDEIIA-VMSGDFTQR-GEPAIGHKWERKKMALEG-GADLVIE-LPLERSGQGAPYF 82 (358)
T ss_pred eeecCcccccHHHHHHHHHHhccCCceEE-eeecchhhc-CCCccccHHHHHhhhhhc-CceEEEE-cceEEecCCCchh
Confidence 3459999999999999999843 54444 444443322 227899999999999886 9999998 5665542 332
Q ss_pred H----HHhhccCccEEEEcCC
Q 017744 146 N----RLFNEHKIDYIIHGDD 162 (366)
Q Consensus 146 ~----~ll~~l~~d~VV~G~D 162 (366)
. .++..+++|.|+.|..
T Consensus 83 a~~av~il~~l~~~~i~fgse 103 (358)
T COG1323 83 ATRAVRILNALGGDDIAFGSP 103 (358)
T ss_pred hHHHHHHHHhcCCCeEEEeCC
Confidence 1 2557788998888743
No 126
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=97.38 E-value=0.00059 Score=61.57 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=49.1
Q ss_pred cccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHh-cCCCCcEEEcCC
Q 017744 265 FDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAP 330 (366)
Q Consensus 265 FD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~-~~~Vd~Vvi~~~ 330 (366)
-+|||.||.-++++|++.+|.|.|=|.+.+ +.+|+.++|..+|++ ++..++|.+-..
T Consensus 8 aNPFT~GH~yLiE~Aa~~~d~l~vFVV~eD---------~S~Fpf~~R~~LVk~G~~~L~NV~V~~~ 65 (182)
T PF08218_consen 8 ANPFTLGHRYLIEQAAKECDWLHVFVVSED---------RSLFPFADRYELVKEGTADLPNVTVHPG 65 (182)
T ss_pred CCCCccHHHHHHHHHHHhCCEEEEEEEccc---------cCcCCHHHHHHHHHHHhCcCCCEEEEcC
Confidence 589999999999999999999988886552 489999999988886 689999988543
No 127
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=97.33 E-value=0.0038 Score=60.47 Aligned_cols=136 Identities=18% Similarity=0.163 Sum_probs=92.6
Q ss_pred CCCCCeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhc----------Ccccc
Q 017744 61 GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG----------LKWVD 130 (366)
Q Consensus 61 ~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~----------~~~VD 130 (366)
+...+++.-+.-+-.++.+||+-|++||.+.||.|.+-+.+++ ...+++++|.++++. ..+-|
T Consensus 141 r~~gkkIgaIVMNANPFTLGH~YLVEqAaaqcDwlHLFvV~eD-------~S~f~y~~R~~Lv~~G~~~l~Nvt~Hsgsd 213 (352)
T COG3053 141 RHPGKKIGAIVMNANPFTLGHRYLVEQAAAQCDWLHLFVVKED-------SSLFPYEDRLDLVKKGTADLPNVTVHSGSD 213 (352)
T ss_pred ccCCCeeEEEEEeCCCccchhHHHHHHHHhhCCEEEEEEEecc-------cccCCHHHHHHHHHHhhccCCceEEecCCC
Confidence 3345567888889999999999999999999998876666544 357899999999984 34667
Q ss_pred EEEecCCccc---cH--------------HHHHHHhhccCccEEEEcCCCCCCCCCC---chHHHHHhCC------eEEE
Q 017744 131 EVIANAPYAI---TE--------------QFMNRLFNEHKIDYIIHGDDPCLLPDGT---DAYALAKKVG------RYKQ 184 (366)
Q Consensus 131 ~vv~~~p~~~---~~--------------eFl~~ll~~l~~d~VV~G~D~~fg~~g~---~~~~~lk~~g------~~~~ 184 (366)
++|..+.|.- .+ -|-+.+...+++-.=.+|..+..-.... ..-.+|.+.+ ++++
T Consensus 214 YiISrATFP~YFiKeq~vv~~s~t~iDl~iFr~~iA~aLgIThRfVG~EP~c~vT~~YNq~M~~~L~~~~~~~p~I~vve 293 (352)
T COG3053 214 YIISRATFPAYFIKEQSVVNDSQTEIDLKIFRKYIAPALGITHRFVGTEPFCRVTAIYNQQMRYWLEDPTISAPPIEVVE 293 (352)
T ss_pred eEEEecccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcceeeecCCCCcHHHHHHHHHHHHHHhccCCCCCceEEEE
Confidence 7777655411 00 2323345668888888898763321111 1122344433 3677
Q ss_pred eccC----CCCCHHHHHHHHHhc
Q 017744 185 IKRT----EGVSSTDIVGRILSS 203 (366)
Q Consensus 185 v~r~----~~vSST~Ir~rI~~~ 203 (366)
++|. ..||-|+.|+.+.+.
T Consensus 294 i~Rk~~~~~~ISAS~VR~~l~~~ 316 (352)
T COG3053 294 IERKKYQEMPISASRVRQLLAKN 316 (352)
T ss_pred eehhhhcCCcccHHHHHHHHHhC
Confidence 8773 479999999998754
No 128
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=97.26 E-value=0.0004 Score=70.37 Aligned_cols=89 Identities=26% Similarity=0.417 Sum_probs=38.1
Q ss_pred EEecccCcCCHHHHHHHHHHHHhC--CeeEEEEccchhhhhcCC-CCCCcHHHHHHHHhcCccccEEEecCCcccc----
Q 017744 69 YMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSGLKWVDEVIANAPYAIT---- 141 (366)
Q Consensus 69 ~~~G~FD~lH~GH~~lL~qAk~lg--d~LvVgv~sd~~i~~~K~-~pi~t~eER~~ll~~~~~VD~vv~~~p~~~~---- 141 (366)
=++-=|.++|.||.-.|++|++.. |. +|+|.|-..+. .| +.+++--.|.++--.+ ++|.|++ -|+.++
T Consensus 5 GIIaEYNPFHnGH~y~i~~~k~~~~ad~-ii~vMSGnFvQ--RGEPAi~dKw~RA~~AL~~-GaDLViE-LP~~~a~qsA 79 (388)
T PF05636_consen 5 GIIAEYNPFHNGHLYQIEQAKKITGADV-IIAVMSGNFVQ--RGEPAIIDKWTRAEMALKN-GADLVIE-LPVVYALQSA 79 (388)
T ss_dssp --E---TT--HHHHHHHHHHH---TSSE-EEEEE--TTSB--TSSB-SS-HHHHHHHHHHH-T-SEEEE----G------
T ss_pred CeEEeECCccHHHHHHHHHHhccCCCCE-EEEEECCCccc--CCCeeeCCHHHHHHHHHHc-CCCEEEE-CCCccccccc
Confidence 344458999999999999999874 54 55566655443 44 7799999999997776 9999997 555443
Q ss_pred HHHHH---HHhhccCccEEEEcCC
Q 017744 142 EQFMN---RLFNEHKIDYIIHGDD 162 (366)
Q Consensus 142 ~eFl~---~ll~~l~~d~VV~G~D 162 (366)
+.|-. .++.++++|+++.|..
T Consensus 80 ~~FA~gaV~lL~~lgvd~l~FGsE 103 (388)
T PF05636_consen 80 EYFARGAVSLLNALGVDYLSFGSE 103 (388)
T ss_dssp ------------------------
T ss_pred cccccccccccccccccccccccc
Confidence 24433 3778889999999864
No 129
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=97.23 E-value=0.0015 Score=64.12 Aligned_cols=97 Identities=18% Similarity=0.201 Sum_probs=67.8
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcCC-----EEEEEEecCchhhcccCC---CCCCCCHHHHHHHHHhcCCCCcEEE
Q 017744 256 ARVVYIDGAFDLFHAGHVEILKKARQLGD-----FLLVGIYTDQIVSEHRGS---YHPIMHLHERSLSVLACRYVDEVII 327 (366)
Q Consensus 256 ~~~v~~~GsFD~~h~GHi~~L~~A~~~gd-----~LiVgV~sD~~v~~~Kg~---~~pi~~~~eR~~~v~~~~~Vd~Vvi 327 (366)
...|++-|.||=+|.||..+|++|++.+. -+++....-+ .+...+ ..-+++++||.+.+..+. ||.+++
T Consensus 15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P--~~~~~~~~~~~~Lt~~~~k~~~l~~~g-vd~~~v 91 (304)
T COG0196 15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHP--RELLKPDKPPTRLTPLREKIRLLAGYG-VDALVV 91 (304)
T ss_pred CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCC--HHHcCCCCCccccCCHHHHHHHHHhcC-CcEEEE
Confidence 46799999999999999999999885542 2233332221 121111 122889999999999996 888887
Q ss_pred cCCC-----CchHHHHH----HcCCcEEEECCCCCCC
Q 017744 328 GAPW-----EVTKDMIT----TFNICLVVHGTVSETN 355 (366)
Q Consensus 328 ~~~~-----~~~~d~i~----~~~~~~vv~G~~~~~~ 355 (366)
..+. -...+|++ .++++.+|-|.|+.-+
T Consensus 92 ~~F~~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF~FG 128 (304)
T COG0196 92 LDFDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRFG 128 (304)
T ss_pred EeCCHhHhhCCHHHHHHHHHhccCCcEEEEecccccC
Confidence 6543 13445555 8899999999998743
No 130
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=97.06 E-value=0.0018 Score=64.74 Aligned_cols=84 Identities=25% Similarity=0.307 Sum_probs=63.1
Q ss_pred ccccCChHHHHHHHHHHh-c-CCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCCCCcEEEcCC----------C
Q 017744 264 AFDLFHAGHVEILKKARQ-L-GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAP----------W 331 (366)
Q Consensus 264 sFD~~h~GHi~~L~~A~~-~-gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~~----------~ 331 (366)
-|||||.||.-+|++|+. . +|..++++.-| .++ .|. .++++-.||..+.++.. +|.|+..+. .
T Consensus 9 eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgd-f~q--Rge-pai~~k~~r~~~aL~~g-~D~VIelP~~~s~q~a~~fa 83 (358)
T COG1323 9 EYNPFHNGHQYHINKAREEFKGDEIIAVMSGD-FTQ--RGE-PAIGHKWERKKMALEGG-ADLVIELPLERSGQGAPYFA 83 (358)
T ss_pred ecCcccccHHHHHHHHHHhccCCceEEeeecc-hhh--cCC-CccccHHHHHhhhhhcC-ceEEEEcceEEecCCCchhh
Confidence 499999999999999997 3 45555555544 654 455 68999999999998884 677777432 1
Q ss_pred CchHHHHHHcCCcEEEECCCC
Q 017744 332 EVTKDMITTFNICLVVHGTVS 352 (366)
Q Consensus 332 ~~~~d~i~~~~~~~vv~G~~~ 352 (366)
.-.+..+..+++|-++.|...
T Consensus 84 ~~av~il~~l~~~~i~fgse~ 104 (358)
T COG1323 84 TRAVRILNALGGDDIAFGSPP 104 (358)
T ss_pred HHHHHHHHhcCCCeEEEeCCC
Confidence 134677888899999999765
No 131
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=96.92 E-value=0.0081 Score=60.84 Aligned_cols=94 Identities=19% Similarity=0.165 Sum_probs=63.4
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHh--CCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCcc----ccEE-EecCC
Q 017744 65 RVRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKW----VDEV-IANAP 137 (366)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qAk~l--gd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~~----VD~v-v~~~p 137 (366)
-++|++.=+||++|.||..++++|.+. +|.|++-+.-- ..| .-..+.+-|+++++.+.- -+.+ +...|
T Consensus 183 w~~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g----~~k-~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~ 257 (383)
T TIGR00339 183 WDTVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVG----LTK-PGDIPAEVRMRAYEVLKEGYPNPERVMLTFLP 257 (383)
T ss_pred CCeEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCC----CCC-CCCCCHHHHHHHHHHHHhhCCCCCceEEEecc
Confidence 357888999999999999999999997 67666655432 223 367889999999986411 1111 22223
Q ss_pred cccc----HHHHHH--HhhccCccEEEEcCCC
Q 017744 138 YAIT----EQFMNR--LFNEHKIDYIIHGDDP 163 (366)
Q Consensus 138 ~~~~----~eFl~~--ll~~l~~d~VV~G~D~ 163 (366)
+++. .+.+.. +-+.|++.++++|.|.
T Consensus 258 ~em~~agpreall~Aiir~nyG~th~IiG~Dh 289 (383)
T TIGR00339 258 LAMRYAGPREAIWHAIIRKNYGATHFIVGRDH 289 (383)
T ss_pred hHhhcCCcHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3222 144433 3366899999999886
No 132
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=96.77 E-value=0.0023 Score=64.88 Aligned_cols=87 Identities=20% Similarity=0.347 Sum_probs=38.8
Q ss_pred ccccCChHHHHHHHHHHhc-CCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCCCCcEEEcCC----------CC
Q 017744 264 AFDLFHAGHVEILKKARQL-GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAP----------WE 332 (366)
Q Consensus 264 sFD~~h~GHi~~L~~A~~~-gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~~----------~~ 332 (366)
-|+|||.||.-.|++||+. +...||+|-|-.++. +|. ..+++--+|+++...+. +|-|+--+. -.
T Consensus 9 EYNPFHnGH~y~i~~~k~~~~ad~ii~vMSGnFvQ--RGE-PAi~dKw~RA~~AL~~G-aDLViELP~~~a~qsA~~FA~ 84 (388)
T PF05636_consen 9 EYNPFHNGHLYQIEQAKKITGADVIIAVMSGNFVQ--RGE-PAIIDKWTRAEMALKNG-ADLVIELPVVYALQSAEYFAR 84 (388)
T ss_dssp --TT--HHHHHHHHHHH---TSSEEEEEE--TTSB--TSS-B-SS-HHHHHHHHHHHT--SEEEE---G-----------
T ss_pred eECCccHHHHHHHHHHhccCCCCEEEEEECCCccc--CCC-eeeCCHHHHHHHHHHcC-CCEEEECCCcccccccccccc
Confidence 4999999999999999975 333566677777776 465 57999999999988884 776665321 01
Q ss_pred chHHHHHHcCCcEEEECCCCCC
Q 017744 333 VTKDMITTFNICLVVHGTVSET 354 (366)
Q Consensus 333 ~~~d~i~~~~~~~vv~G~~~~~ 354 (366)
=.+..+.++++|.++-|.+..+
T Consensus 85 gaV~lL~~lgvd~l~FGsE~~~ 106 (388)
T PF05636_consen 85 GAVSLLNALGVDYLSFGSESGD 106 (388)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccc
Confidence 2356788899999999988744
No 133
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.54 E-value=0.0081 Score=58.23 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=56.3
Q ss_pred CCCCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHH-hcCCCCcEEEc
Q 017744 253 GPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIG 328 (366)
Q Consensus 253 ~~~~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vvi~ 328 (366)
.++++|+-+--.-+||+.||-=++++|++.||.|.+=|.+++ +..|+.++|..+++ .+++.++|.+-
T Consensus 142 ~~gkkIgaIVMNANPFTLGH~YLVEqAaaqcDwlHLFvV~eD---------~S~f~y~~R~~Lv~~G~~~l~Nvt~H 209 (352)
T COG3053 142 HPGKKIGAIVMNANPFTLGHRYLVEQAAAQCDWLHLFVVKED---------SSLFPYEDRLDLVKKGTADLPNVTVH 209 (352)
T ss_pred cCCCeeEEEEEeCCCccchhHHHHHHHHhhCCEEEEEEEecc---------cccCCHHHHHHHHHHhhccCCceEEe
Confidence 356788888888999999999999999999999988776653 47999999997666 46888888774
No 134
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=96.01 E-value=0.016 Score=56.26 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=51.0
Q ss_pred CCeEEE--EcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcc-cCCCCCCCCHHHHHHHHHhcCCCCcEEEcC
Q 017744 255 NARVVY--IDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEH-RGSYHPIMHLHERSLSVLACRYVDEVIIGA 329 (366)
Q Consensus 255 ~~~~v~--~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~-Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~ 329 (366)
++++++ +-|. +|.||..++++|++.+|.+||.+..++.--.. ....+.+.++++|.++++++ .||.+++.+
T Consensus 21 g~~ig~VpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~P~ 94 (282)
T TIGR00018 21 GKTVGFVPTMGN---LHDGHMSLIDRAVAENDVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL-GVDVVFAPS 94 (282)
T ss_pred CCeEEEEECCCc---ccHHHHHHHHHHHHhCCeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc-CCCEEECCC
Confidence 345544 5566 99999999999999999999999877543111 11113467899999998887 477776643
No 135
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=96.01 E-value=0.024 Score=55.09 Aligned_cols=72 Identities=19% Similarity=0.265 Sum_probs=52.0
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcc-cCCCCCCCCHHHHHHHHHhcCCCCcEEEc
Q 017744 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEH-RGSYHPIMHLHERSLSVLACRYVDEVIIG 328 (366)
Q Consensus 255 ~~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~-Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~ 328 (366)
++++++++ +..-+|.||..+|++|++.++.++|.+..++.--.. ......+.++++|..+++++ .||.+++.
T Consensus 21 ~~~i~~v~-tmG~lH~GH~~Li~~a~~~a~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~-GvD~v~~p 93 (281)
T PRK00380 21 GKRIGLVP-TMGALHEGHLSLVREARAEADIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA-GVDLVFAP 93 (281)
T ss_pred CCeEEEEE-ccCceeHHHHHHHHHHHHhCCEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc-CCCEEEeC
Confidence 45666655 555599999999999999999999999877543111 11113467899999998887 47777664
No 136
>PLN02660 pantoate--beta-alanine ligase
Probab=95.70 E-value=0.024 Score=55.18 Aligned_cols=66 Identities=23% Similarity=0.218 Sum_probs=48.7
Q ss_pred EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcc-cCCCCCCCCHHHHHHHHHhcCCCCcEEEc
Q 017744 259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEH-RGSYHPIMHLHERSLSVLACRYVDEVIIG 328 (366)
Q Consensus 259 v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~-Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~ 328 (366)
|.+=|. +|.||..++++|++.+|.++|.+..++.--.. ....+...++++|..+++++ .||.++..
T Consensus 26 VpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~P 92 (284)
T PLN02660 26 VPTMGY---LHEGHLSLVRAARARADVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAAL-GVDAVFNP 92 (284)
T ss_pred EEcCch---hhHHHHHHHHHHHHhCCEEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHc-CCCEEECC
Confidence 444566 99999999999999999999999877653110 11113567899999998887 47777653
No 137
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=94.99 E-value=0.073 Score=51.69 Aligned_cols=68 Identities=19% Similarity=0.245 Sum_probs=48.9
Q ss_pred CCeEE--EEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcc-cCCCCCCCCHHHHHHHHHhcCCCCcEE
Q 017744 255 NARVV--YIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEH-RGSYHPIMHLHERSLSVLACRYVDEVI 326 (366)
Q Consensus 255 ~~~~v--~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~-Kg~~~pi~~~~eR~~~v~~~~~Vd~Vv 326 (366)
+++++ .+=|. +|.||..++++|++.+|.+||.+..++.--.. ........+++++.+.++++ .||.+.
T Consensus 21 ~~~ig~V~TmG~---LH~GH~~LI~~a~~~a~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~-GvD~vF 91 (277)
T cd00560 21 GKTIGFVPTMGA---LHEGHLSLVRRARAENDVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA-GVDLLF 91 (277)
T ss_pred CCeEEEEECCCc---ccHHHHHHHHHHHHhCCEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHC-CCCEEE
Confidence 34454 45566 99999999999999999999999877543111 11113466899999998887 477663
No 138
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=94.70 E-value=0.078 Score=51.51 Aligned_cols=66 Identities=24% Similarity=0.308 Sum_probs=39.0
Q ss_pred EEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCC---CCCCcHHHHHHHHhcCccccEEEe
Q 017744 68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG---PPVLSMEERLALVSGLKWVDEVIA 134 (366)
Q Consensus 68 V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~---~pi~t~eER~~ll~~~~~VD~vv~ 134 (366)
+-+..+---+|-||+.|+++|++.+|.++|.+.-++.=..... ..--+.+.=+++++.. +||.++.
T Consensus 24 igfVPTMGaLHeGHlsLi~~A~~~~d~vVVSIFVNP~QF~~~eD~~~YPR~~e~D~~ll~~~-gvD~vF~ 92 (280)
T PF02569_consen 24 IGFVPTMGALHEGHLSLIRRARAENDVVVVSIFVNPTQFGPNEDFDKYPRTLERDLELLEKA-GVDAVFA 92 (280)
T ss_dssp EEEEEE-SS--HHHHHHHHHHHHHSSEEEEEE---GGGSSTTSHTTTS---HHHHHHHHHHT-T-SEEE-
T ss_pred EEEECCCchhhHHHHHHHHHHHhCCCEEEEEECcCcccCCCcchhhhCCCChHHHHHHHhcc-CCCEEEc
Confidence 3344444457999999999999999998888875553111111 2334567777888886 8999886
No 139
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=94.27 E-value=0.15 Score=49.20 Aligned_cols=75 Identities=28% Similarity=0.273 Sum_probs=48.6
Q ss_pred hcccCCCCCeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhh-hcCC--CCCCcHHHHHHHHhcCccccEEE
Q 017744 57 KKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKG--PPVLSMEERLALVSGLKWVDEVI 133 (366)
Q Consensus 57 ~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~-~~K~--~pi~t~eER~~ll~~~~~VD~vv 133 (366)
+.|++..+ +|-..=+.-.+|-||+.|+++|++.+|.++|.+.-++.=. ++.. ..--+.+.=+++++.. +||.++
T Consensus 15 ~~~r~~gk--~Vg~VPTMG~LH~GHlsLVr~A~~~~d~VVVSIFVNP~QFg~~EDl~~YPR~l~~D~~~le~~-gvd~vF 91 (285)
T COG0414 15 KALRKEGK--RVGLVPTMGNLHEGHLSLVRRAKKENDVVVVSIFVNPLQFGPNEDLDRYPRTLERDLELLEKE-GVDIVF 91 (285)
T ss_pred HHHHHcCC--EEEEEcCCcccchHHHHHHHHHhhcCCeEEEEEEeChhhcCCchhhhhCCCCHHHHHHHHHhc-CCcEEe
Confidence 34555443 4566666778999999999999999998888776555311 1111 2223455556666664 888877
Q ss_pred e
Q 017744 134 A 134 (366)
Q Consensus 134 ~ 134 (366)
-
T Consensus 92 ~ 92 (285)
T COG0414 92 A 92 (285)
T ss_pred C
Confidence 5
No 140
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=93.82 E-value=0.7 Score=46.45 Aligned_cols=95 Identities=20% Similarity=0.202 Sum_probs=61.7
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcC---cc-ccEEEec-CCcc
Q 017744 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL---KW-VDEVIAN-APYA 139 (366)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~---~~-VD~vv~~-~p~~ 139 (366)
=++|++.=++|++|.||-.+.+.|...+|.|.|-..-- .+.+-=.+.+-|++..+.+ -+ =|.+++. .|+.
T Consensus 183 wk~vvafQTRNp~HraHEyl~K~Al~~vdgllv~plVG-----~tk~gD~~~e~rm~~ye~l~~~Yyp~dr~~Ls~~~~a 257 (397)
T COG2046 183 WKTVVAFQTRNPPHRAHEYLQKRALEKVDGLLVHPLVG-----ATKPGDIPDEVRMEYYEALLKHYYPPDRVFLSVLPAA 257 (397)
T ss_pred CeEEEEEecCCCchHHHHHHHHHHHHhcCcEEEEeeec-----cccCCCchHHHHHHHHHHHHHhCCCCCcEEEEecHHH
Confidence 45899999999999999999999999998644322211 1112234567777665542 12 4555542 2332
Q ss_pred cc-----HHHHHHHh-hccCccEEEEcCCCC
Q 017744 140 IT-----EQFMNRLF-NEHKIDYIIHGDDPC 164 (366)
Q Consensus 140 ~~-----~eFl~~ll-~~l~~d~VV~G~D~~ 164 (366)
+. +.-+..++ +.|+|...++|-|..
T Consensus 258 MRyagPrEa~~HaIIRkNyGcTHfIVGRDHA 288 (397)
T COG2046 258 MRYAGPREALLHAIIRKNYGCTHFIVGRDHA 288 (397)
T ss_pred hhhcCcHHHHHHHHHHhhcCCeeeeecCCCC
Confidence 22 35556666 458999999999974
No 141
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=93.82 E-value=1.4 Score=44.89 Aligned_cols=95 Identities=18% Similarity=0.144 Sum_probs=61.7
Q ss_pred CCeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCc----cccEEEe-cCCc
Q 017744 64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK----WVDEVIA-NAPY 138 (366)
Q Consensus 64 ~~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~----~VD~vv~-~~p~ 138 (366)
+-++|++.=+-+++|.||..+++.|.+.+|.|++-..- ..+.+-=++.+-|++..+.+. --+.+++ ..|.
T Consensus 185 gw~~VvafqTrnP~HraHe~l~~~a~e~~d~lll~plv-----G~~k~~di~~~~r~~~~~~~~~~y~p~~~v~l~~lp~ 259 (391)
T PRK04149 185 GWKTVVAFQTRNPPHRAHEYLQKCALEIVDGLLLNPLV-----GETKSGDIPAEVRMEAYEALLKNYYPKDRVLLSVTPA 259 (391)
T ss_pred CCCeEEEeecCCCCchHHHHHHHHHHHhcCeEEEecCc-----CCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 34578889999999999999999999999854442211 111234567788888877641 1122222 2232
Q ss_pred cc-----cHHHHHHHh-hccCccEEEEcCCC
Q 017744 139 AI-----TEQFMNRLF-NEHKIDYIIHGDDP 163 (366)
Q Consensus 139 ~~-----~~eFl~~ll-~~l~~d~VV~G~D~ 163 (366)
.+ .+..++.++ +.++|..+++|-|+
T Consensus 260 ~mryAGPrEa~lhAivrkN~GcTh~IvGrDH 290 (391)
T PRK04149 260 AMRYAGPREAIFHAIVRKNYGCTHFIVGRDH 290 (391)
T ss_pred hhcccCcHHHHHHHHHHHhCCCCeEEECCCC
Confidence 22 145556655 45899999999987
No 142
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=93.68 E-value=0.15 Score=53.57 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=49.7
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchh-hhhcCC--CCCCcHHHHHHHHhcCccccEEEec
Q 017744 67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEE-IIANKG--PPVLSMEERLALVSGLKWVDEVIAN 135 (366)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~-i~~~K~--~pi~t~eER~~ll~~~~~VD~vv~~ 135 (366)
++-+.-+--.+|-||..|+++|++.+|.++|.+.-++. ..+... ..--+.++=+++++.. +||.|+.+
T Consensus 21 ~ig~VPTMG~LH~GHlsLi~~A~~~~d~vVvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~-gvd~vf~P 91 (512)
T PRK13477 21 TIGFVPTMGALHQGHLSLIRRARQENDVVLVSIFVNPLQFGPNEDLERYPRTLEADRELCESA-GVDAIFAP 91 (512)
T ss_pred cEEEECCCcchhHHHHHHHHHHHHhCCEEEEEEccCcccCCCchhhhhCCCCHHHHHHHHHhc-CCCEEECC
Confidence 56777788889999999999999999988888854442 111111 2334677778888886 89998763
No 143
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=93.41 E-value=0.57 Score=47.58 Aligned_cols=92 Identities=15% Similarity=0.126 Sum_probs=62.2
Q ss_pred eEEEEcCccccCChHHHHHHHHHHhc--CCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc-C-CCC--cEEEc--
Q 017744 257 RVVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-R-YVD--EVIIG-- 328 (366)
Q Consensus 257 ~~v~~~GsFD~~h~GHi~~L~~A~~~--gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~-~-~Vd--~Vvi~-- 328 (366)
+.|+--=||||+|.||..+++.|... .|.|++-..-- ..| .-.++.+-|+.+++.+ . +-. .+++.
T Consensus 184 ~~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g----~~k---~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~ 256 (383)
T TIGR00339 184 DTVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVG----LTK---PGDIPAEVRMRAYEVLKEGYPNPERVMLTFL 256 (383)
T ss_pred CeEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCC----CCC---CCCCCHHHHHHHHHHHHhhCCCCCceEEEec
Confidence 34444688999999999999999987 78665554322 233 3688999999988877 3 322 33331
Q ss_pred -------CCCCchHH--HHHHcCCcEEEECCCCCCC
Q 017744 329 -------APWEVTKD--MITTFNICLVVHGTVSETN 355 (366)
Q Consensus 329 -------~~~~~~~d--~i~~~~~~~vv~G~~~~~~ 355 (366)
.|...... +.+.++++.++-|.|..+.
T Consensus 257 ~~em~~agpreall~Aiir~nyG~th~IiG~Dhag~ 292 (383)
T TIGR00339 257 PLAMRYAGPREAIWHAIIRKNYGATHFIVGRDHAGP 292 (383)
T ss_pred chHhhcCCcHHHHHHHHHHHHCCCCEEEECCCCCCC
Confidence 12222233 5566799999999887654
No 144
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=92.68 E-value=1.8 Score=43.54 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=61.0
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHhC--CeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCc--cc--cEEEe-cCC
Q 017744 65 RVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK--WV--DEVIA-NAP 137 (366)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qAk~lg--d~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~--~V--D~vv~-~~p 137 (366)
-++|++.=+-+++|.||..+++.|.+.+ +.|++-..- ..+.+-=++.+-|++..+.+. +. +.+++ ..|
T Consensus 156 w~~VvafqtrnP~HraHe~l~~~a~~~~~~~~lll~plv-----G~~k~~d~~~~~r~~~~~~l~~~y~~~~~~~l~~lp 230 (353)
T cd00517 156 WRRVVAFQTRNPMHRAHEELMKRAAEKLLNDGLLLHPLV-----GWTKPGDVPDEVRMRAYEALLEEYYLPERTVLAILP 230 (353)
T ss_pred CCeEEEeecCCCCchhhHHHHHHHHHHcCCCcEEEEecc-----CCCCCCCCCHHHHHHHHHHHHHhCCCCCcEEEEecc
Confidence 3468889999999999999999999977 433332211 111233567788888777641 22 44333 223
Q ss_pred cccc-----HHHHHHHh-hccCccEEEEcCCCC
Q 017744 138 YAIT-----EQFMNRLF-NEHKIDYIIHGDDPC 164 (366)
Q Consensus 138 ~~~~-----~eFl~~ll-~~l~~d~VV~G~D~~ 164 (366)
+.+- +..+..++ +.++|.++++|-|+.
T Consensus 231 ~~mryAGPrEallhAiirkN~GcThfIvGrDHA 263 (353)
T cd00517 231 LPMRYAGPREALWHAIIRKNYGATHFIVGRDHA 263 (353)
T ss_pred chhcccCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence 3221 45556655 458999999999873
No 145
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=92.61 E-value=1 Score=42.13 Aligned_cols=93 Identities=19% Similarity=0.241 Sum_probs=53.5
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHhC-CeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCc----cccEEEe-cCCccc
Q 017744 67 RVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK----WVDEVIA-NAPYAI 140 (366)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qAk~lg-d~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~----~VD~vv~-~~p~~~ 140 (366)
+|++.=+-+++|.||..+++.|.+.+ +.|.+-..-. .+.+--++.+-|++..+.+. --+.+++ ..|...
T Consensus 22 ~VvafqtrnPlHraHe~l~~~a~e~~~~~lll~plvG-----~~k~~d~~~~~r~~~~~~~~~~y~p~~~v~l~~lp~~m 96 (215)
T PF01747_consen 22 RVVAFQTRNPLHRAHEYLMRRALEKAGDGLLLHPLVG-----PTKPGDIPYEVRVRCYEALIDNYFPKNRVLLSPLPLPM 96 (215)
T ss_dssp SEEEEEESS---HHHHHHHHHHHHHHTSEEEEEEBES-----B-STTSCCHHHHHHHHHHHHHHCSSTTGEEEEBBESB-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCcEEEEeccC-----CCCcCCCCHHHHHHHHHHHHHHhCCCCcEEEeccCchh
Confidence 46777779999999999999999986 6555433211 12234567788887776531 1233332 122221
Q ss_pred c-----HHHHHHHh-hccCccEEEEcCCCC
Q 017744 141 T-----EQFMNRLF-NEHKIDYIIHGDDPC 164 (366)
Q Consensus 141 ~-----~eFl~~ll-~~l~~d~VV~G~D~~ 164 (366)
- +.-+..++ +.++|..+++|.|..
T Consensus 97 r~aGPrEallhAiirkN~GcTh~IvGrdhA 126 (215)
T PF01747_consen 97 RYAGPREALLHAIIRKNYGCTHFIVGRDHA 126 (215)
T ss_dssp --SHHHHHHHHHHHHHHTT-SEEEE-TTTT
T ss_pred cccCcHHHHHHHHHHHHCCCceEEeCCcCC
Confidence 1 34455555 458999999999974
No 146
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=92.34 E-value=0.29 Score=47.61 Aligned_cols=70 Identities=19% Similarity=0.305 Sum_probs=36.5
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCC--CCCCCCHHHHHHHHHhcCCCCcEEE
Q 017744 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGS--YHPIMHLHERSLSVLACRYVDEVII 327 (366)
Q Consensus 255 ~~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~--~~pi~~~~eR~~~v~~~~~Vd~Vvi 327 (366)
+++++++|=. =-+|.||+.++++|++.+|.+||.|.-|+.=-....- .+|- +++.=.+++++. .||-|..
T Consensus 21 ~~~igfVPTM-GaLHeGHlsLi~~A~~~~d~vVVSIFVNP~QF~~~eD~~~YPR-~~e~D~~ll~~~-gvD~vF~ 92 (280)
T PF02569_consen 21 GKTIGFVPTM-GALHEGHLSLIRRARAENDVVVVSIFVNPTQFGPNEDFDKYPR-TLERDLELLEKA-GVDAVFA 92 (280)
T ss_dssp TSSEEEEEE--SS--HHHHHHHHHHHHHSSEEEEEE---GGGSSTTSHTTTS----HHHHHHHHHHT-T-SEEE-
T ss_pred CCeEEEECCC-chhhHHHHHHHHHHHhCCCEEEEEECcCcccCCCcchhhhCCC-ChHHHHHHHhcc-CCCEEEc
Confidence 4566666522 2359999999999999999999999765431111100 0222 344444555544 5776554
No 147
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=92.33 E-value=2.3 Score=39.62 Aligned_cols=60 Identities=22% Similarity=0.164 Sum_probs=45.6
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHhC-----CeeEEEEccchhhhhcCCCCCCcHHHHHHHHhc
Q 017744 65 RVRVYMDGCFDLMHYGHANALRQAKALG-----DELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125 (366)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qAk~lg-----d~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~ 125 (366)
+...++.|.|.++-.+|.++++-|+..- -+++=|+-| |.-..+|.+-+.+.-.|+.+++.
T Consensus 8 ~v~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimS-PV~DaYkKKgLipa~hrv~~~El 72 (234)
T KOG3199|consen 8 PVVLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMS-PVGDAYKKKGLIPAYHRVRMVEL 72 (234)
T ss_pred eEEEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEec-ccchhhhccccchhhhHHHHHHh
Confidence 4456889999999999999999999852 235556554 33334566688899999999985
No 148
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=92.03 E-value=0.26 Score=47.57 Aligned_cols=40 Identities=23% Similarity=0.552 Sum_probs=33.5
Q ss_pred CCCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCc
Q 017744 254 PNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQ 294 (366)
Q Consensus 254 ~~~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~ 294 (366)
.+++++++| |---+|.||+.++++|++..|.+||.|.-|+
T Consensus 20 ~gk~Vg~VP-TMG~LH~GHlsLVr~A~~~~d~VVVSIFVNP 59 (285)
T COG0414 20 EGKRVGLVP-TMGNLHEGHLSLVRRAKKENDVVVVSIFVNP 59 (285)
T ss_pred cCCEEEEEc-CCcccchHHHHHHHHHhhcCCeEEEEEEeCh
Confidence 356777776 4556999999999999999999999998664
No 149
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=90.99 E-value=2.4 Score=45.24 Aligned_cols=97 Identities=15% Similarity=0.091 Sum_probs=60.7
Q ss_pred CCeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCc---cccEEEe-cCCcc
Q 017744 64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK---WVDEVIA-NAPYA 139 (366)
Q Consensus 64 ~~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~---~VD~vv~-~~p~~ 139 (366)
+-++|+..=+-+++|.||..+++.|.+.+|.. +-+++ .+-..| .--++.+-|++..+.+. --+.+++ ..|..
T Consensus 185 gw~~v~afqtrnP~Hr~He~l~~~a~~~~d~~-lll~p--~~G~~k-~~d~~~~~r~~~~~~~~~~~p~~~~~l~~~p~~ 260 (568)
T PRK05537 185 GWRRVVAFQTRNPLHRAHEELTKRAAREVGAN-LLIHP--VVGMTK-PGDIDHFTRVRCYEALLDKYPPATTLLSLLPLA 260 (568)
T ss_pred CCCcEEEEecCCCCcHHHHHHHHHHHHhcCCe-EEEec--CCCCCC-CCCCCHHHHHHHHHHHHHhCCCCcEEEEeccch
Confidence 34568889999999999999999999988732 23333 111111 33567788888777531 1222222 12221
Q ss_pred c-----cHHHHHHHh-hccCccEEEEcCCCC
Q 017744 140 I-----TEQFMNRLF-NEHKIDYIIHGDDPC 164 (366)
Q Consensus 140 ~-----~~eFl~~ll-~~l~~d~VV~G~D~~ 164 (366)
+ .+..++.++ +.++|.++++|-|+.
T Consensus 261 mryaGpreai~hAi~r~N~Gcth~ivGrdhA 291 (568)
T PRK05537 261 MRMAGPREALWHAIIRRNYGCTHFIVGRDHA 291 (568)
T ss_pred hcccCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence 1 135556555 558999999999874
No 150
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=90.80 E-value=0.34 Score=51.01 Aligned_cols=69 Identities=20% Similarity=0.376 Sum_probs=42.7
Q ss_pred eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccC---CCCCCCCHHHHHHHHHhcCCCCcEEEcC
Q 017744 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRG---SYHPIMHLHERSLSVLACRYVDEVIIGA 329 (366)
Q Consensus 257 ~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg---~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~ 329 (366)
+++++| |==-+|.||+.++++|++.+|.+||.|.-|+.=-. .+ ..+|- ++++=.+++++. .||-|...+
T Consensus 21 ~ig~VP-TMG~LH~GHlsLi~~A~~~~d~vVvSIFVNP~QF~-~~eD~~~YPr-~~~~D~~~l~~~-gvd~vf~P~ 92 (512)
T PRK13477 21 TIGFVP-TMGALHQGHLSLIRRARQENDVVLVSIFVNPLQFG-PNEDLERYPR-TLEADRELCESA-GVDAIFAPS 92 (512)
T ss_pred cEEEEC-CCcchhHHHHHHHHHHHHhCCEEEEEEccCcccCC-CchhhhhCCC-CHHHHHHHHHhc-CCCEEECCC
Confidence 555554 33458999999999999999999999965532100 00 00222 445445555554 577665543
No 151
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=90.44 E-value=0.6 Score=43.67 Aligned_cols=76 Identities=18% Similarity=0.206 Sum_probs=46.1
Q ss_pred hhcccCCCCCeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhh-hhcCC--CCCCcHHHHHHHHhcCccccEE
Q 017744 56 HKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI-IANKG--PPVLSMEERLALVSGLKWVDEV 132 (366)
Q Consensus 56 ~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i-~~~K~--~pi~t~eER~~ll~~~~~VD~v 132 (366)
...+++..+ ++-..-+.-.+|-||..|++|+++..+..+|.+.-++.- .+... ...-+..+-+..|+++ +||.+
T Consensus 16 ~~~~R~~g~--tIgfVPTMG~LHeGH~SLvrqs~~~~~~tVVSIfVNP~QF~pteDL~~YPrt~~~D~~~L~~L-gvdvv 92 (283)
T KOG3042|consen 16 TQELRETGE--TIGFVPTMGCLHEGHASLVRQSVKENTYTVVSIFVNPSQFAPTEDLDNYPRTLPDDIKLLESL-GVDVV 92 (283)
T ss_pred HHHHHhcCC--eEEEecccccccccHHHHHHHHHhhCceEEEEEEechhhcCChhHhhcCCccCccHHHHHHhc-CceEE
Confidence 445555433 233333445589999999999999999877776554431 11111 1122344556677887 88877
Q ss_pred Ee
Q 017744 133 IA 134 (366)
Q Consensus 133 v~ 134 (366)
+-
T Consensus 93 fa 94 (283)
T KOG3042|consen 93 FA 94 (283)
T ss_pred Ec
Confidence 64
No 152
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=84.89 E-value=3.2 Score=38.71 Aligned_cols=69 Identities=14% Similarity=0.231 Sum_probs=47.8
Q ss_pred EEEEcCccccCChHHHHHHHHHHhc----CC-EEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc-CCCCcEEEcC
Q 017744 258 VVYIDGAFDLFHAGHVEILKKARQL----GD-FLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVIIGA 329 (366)
Q Consensus 258 ~v~~~GsFD~~h~GHi~~L~~A~~~----gd-~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd~Vvi~~ 329 (366)
..+-.|+|+|++.+|+.+++-|+.. +. +++=|+-|- .--.||. +.+.+..-|+.+++.. +.=+.+.+++
T Consensus 10 ~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimSP-V~DaYkK--KgLipa~hrv~~~ElAt~~Skwl~vD~ 84 (234)
T KOG3199|consen 10 VLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMSP-VGDAYKK--KGLIPAYHRVRMVELATETSKWLMVDG 84 (234)
T ss_pred EEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEecc-cchhhhc--cccchhhhHHHHHHhhhccccceecch
Confidence 3466799999999999999999843 23 466666643 2224553 4888999999888865 4334455543
No 153
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=82.38 E-value=2.2 Score=39.93 Aligned_cols=40 Identities=13% Similarity=0.458 Sum_probs=33.9
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCch
Q 017744 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQI 295 (366)
Q Consensus 255 ~~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~ 295 (366)
+++|.++| |--.+|.||..+++++.+..++.+|.|..++.
T Consensus 23 g~tIgfVP-TMG~LHeGH~SLvrqs~~~~~~tVVSIfVNP~ 62 (283)
T KOG3042|consen 23 GETIGFVP-TMGCLHEGHASLVRQSVKENTYTVVSIFVNPS 62 (283)
T ss_pred CCeEEEec-ccccccccHHHHHHHHHhhCceEEEEEEechh
Confidence 56777777 45679999999999999999999999987643
No 154
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=61.35 E-value=2.4 Score=44.01 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=26.5
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcC
Q 017744 255 NARVVYIDGAFDLFHAGHVEILKKARQLG 283 (366)
Q Consensus 255 ~~~~v~~~GsFD~~h~GHi~~L~~A~~~g 283 (366)
+++.++..|+||.+|.||+.+|.++..-|
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (470)
T PLN02341 413 NEDDTFWAELLKNSDCSEISFLSKMAING 441 (470)
T ss_pred CcchhHHHHhhcccccchhhhhhhhhhcc
Confidence 57899999999999999999999988765
No 155
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=57.41 E-value=6.1 Score=41.07 Aligned_cols=29 Identities=7% Similarity=0.038 Sum_probs=25.7
Q ss_pred CCeEEEEecccCcCCHHHHHHHHHHHHhC
Q 017744 64 KRVRVYMDGCFDLMHYGHANALRQAKALG 92 (366)
Q Consensus 64 ~~~~V~~~G~FD~lH~GH~~lL~qAk~lg 92 (366)
+++.+++-||||.+|.||+.+|+++..-+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (470)
T PLN02341 413 NEDDTFWAELLKNSDCSEISFLSKMAING 441 (470)
T ss_pred CcchhHHHHhhcccccchhhhhhhhhhcc
Confidence 45578999999999999999999998765
No 156
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=56.70 E-value=58 Score=33.33 Aligned_cols=92 Identities=17% Similarity=0.126 Sum_probs=60.3
Q ss_pred eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc-C-CC--CcEEEcCC--
Q 017744 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-R-YV--DEVIIGAP-- 330 (366)
Q Consensus 257 ~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~-~-~V--d~Vvi~~~-- 330 (366)
+.|+--=|.+|+|.+|..+.+.|.+.+|-|++-- .+-..| .--++.+-|+...+++ + |. +.|++...
T Consensus 187 ~~VvafqTrnP~HraHe~l~~~a~e~~d~lll~p----lvG~~k---~~di~~~~r~~~~~~~~~~y~p~~~v~l~~lp~ 259 (391)
T PRK04149 187 KTVVAFQTRNPPHRAHEYLQKCALEIVDGLLLNP----LVGETK---SGDIPAEVRMEAYEALLKNYYPKDRVLLSVTPA 259 (391)
T ss_pred CeEEEeecCCCCchHHHHHHHHHHHhcCeEEEec----CcCCCC---CCCCCHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 4455567799999999999999999999555511 222223 3567999999888887 3 33 34444211
Q ss_pred ----CC----chH-HHHHHcCCcEEEECCCCCCC
Q 017744 331 ----WE----VTK-DMITTFNICLVVHGTVSETN 355 (366)
Q Consensus 331 ----~~----~~~-d~i~~~~~~~vv~G~~~~~~ 355 (366)
-+ +.- -+-+.++++-++-|.|+.+.
T Consensus 260 ~mryAGPrEa~lhAivrkN~GcTh~IvGrDHAG~ 293 (391)
T PRK04149 260 AMRYAGPREAIFHAIVRKNYGCTHFIVGRDHAGV 293 (391)
T ss_pred hhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCc
Confidence 11 112 22355799999999887644
No 157
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=54.64 E-value=73 Score=32.43 Aligned_cols=93 Identities=19% Similarity=0.125 Sum_probs=62.4
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc--CCC--CcEEEcC-
Q 017744 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC--RYV--DEVIIGA- 329 (366)
Q Consensus 255 ~~~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~--~~V--d~Vvi~~- 329 (366)
+-++|+.--|+||.|.||-.+.++|....|-|+|--- +-..| .-=++.+-|++..+.+ .|- |.+++.-
T Consensus 182 gwk~vvafQTRNp~HraHEyl~K~Al~~vdgllv~pl----VG~tk---~gD~~~e~rm~~ye~l~~~Yyp~dr~~Ls~~ 254 (397)
T COG2046 182 GWKTVVAFQTRNPPHRAHEYLQKRALEKVDGLLVHPL----VGATK---PGDIPDEVRMEYYEALLKHYYPPDRVFLSVL 254 (397)
T ss_pred CCeEEEEEecCCCchHHHHHHHHHHHHhcCcEEEEee----ecccc---CCCchHHHHHHHHHHHHHhCCCCCcEEEEec
Confidence 4578888899999999999999999999995433221 11223 2455788899888877 333 4555531
Q ss_pred --------C-CCchHHHHH-HcCCcEEEECCCCCC
Q 017744 330 --------P-WEVTKDMIT-TFNICLVVHGTVSET 354 (366)
Q Consensus 330 --------~-~~~~~d~i~-~~~~~~vv~G~~~~~ 354 (366)
| +.+.-..++ .+++.-+|-|-|+.+
T Consensus 255 ~~aMRyagPrEa~~HaIIRkNyGcTHfIVGRDHAG 289 (397)
T COG2046 255 PAAMRYAGPREALLHAIIRKNYGCTHFIVGRDHAG 289 (397)
T ss_pred HHHhhhcCcHHHHHHHHHHhhcCCeeeeecCCCCC
Confidence 1 112233343 469999999988874
No 158
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=52.76 E-value=91 Score=31.46 Aligned_cols=92 Identities=15% Similarity=0.087 Sum_probs=60.0
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc--CCC--CcEEEcCC-
Q 017744 258 VVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC--RYV--DEVIIGAP- 330 (366)
Q Consensus 258 ~v~~~GsFD~~h~GHi~~L~~A~~~g--d~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~--~~V--d~Vvi~~~- 330 (366)
.|+--=|.+|+|.+|..++++|.... |-|+|-- .+-..| .-=++.+-|+...+++ .|. +.+++...
T Consensus 158 ~VvafqtrnP~HraHe~l~~~a~~~~~~~~lll~p----lvG~~k---~~d~~~~~r~~~~~~l~~~y~~~~~~~l~~lp 230 (353)
T cd00517 158 RVVAFQTRNPMHRAHEELMKRAAEKLLNDGLLLHP----LVGWTK---PGDVPDEVRMRAYEALLEEYYLPERTVLAILP 230 (353)
T ss_pred eEEEeecCCCCchhhHHHHHHHHHHcCCCcEEEEe----ccCCCC---CCCCCHHHHHHHHHHHHHhCCCCCcEEEEecc
Confidence 34445789999999999999999877 4333321 121223 3567999999888887 555 56655321
Q ss_pred -----CC----chHH-HHHHcCCcEEEECCCCCCCC
Q 017744 331 -----WE----VTKD-MITTFNICLVVHGTVSETNT 356 (366)
Q Consensus 331 -----~~----~~~d-~i~~~~~~~vv~G~~~~~~~ 356 (366)
-+ +.-- +-+.++++-++-|.|+.+..
T Consensus 231 ~~mryAGPrEallhAiirkN~GcThfIvGrDHAG~g 266 (353)
T cd00517 231 LPMRYAGPREALWHAIIRKNYGATHFIVGRDHAGVG 266 (353)
T ss_pred chhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCCC
Confidence 11 1122 23457999999998886553
No 159
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=41.45 E-value=87 Score=33.59 Aligned_cols=93 Identities=15% Similarity=0.097 Sum_probs=58.4
Q ss_pred eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc--CCC-CcEEEcC-C--
Q 017744 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC--RYV-DEVIIGA-P-- 330 (366)
Q Consensus 257 ~~v~~~GsFD~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~--~~V-d~Vvi~~-~-- 330 (366)
+.|+--=|.+|+|.+|..+++.|....|.. |-++ ..+-..| .--++.+-|+...+.+ .+- +.+++.. |
T Consensus 187 ~~v~afqtrnP~Hr~He~l~~~a~~~~d~~-lll~--p~~G~~k---~~d~~~~~r~~~~~~~~~~~p~~~~~l~~~p~~ 260 (568)
T PRK05537 187 RRVVAFQTRNPLHRAHEELTKRAAREVGAN-LLIH--PVVGMTK---PGDIDHFTRVRCYEALLDKYPPATTLLSLLPLA 260 (568)
T ss_pred CcEEEEecCCCCcHHHHHHHHHHHHhcCCe-EEEe--cCCCCCC---CCCCCHHHHHHHHHHHHHhCCCCcEEEEeccch
Confidence 334446679999999999999999988832 2222 2221223 3577999999777776 232 2343321 0
Q ss_pred ---CC----chH-HHHHHcCCcEEEECCCCCCC
Q 017744 331 ---WE----VTK-DMITTFNICLVVHGTVSETN 355 (366)
Q Consensus 331 ---~~----~~~-d~i~~~~~~~vv~G~~~~~~ 355 (366)
-+ +.. -+.+.++++.++-|.|+.+.
T Consensus 261 mryaGpreai~hAi~r~N~Gcth~ivGrdhAg~ 293 (568)
T PRK05537 261 MRMAGPREALWHAIIRRNYGCTHFIVGRDHAGP 293 (568)
T ss_pred hcccCcHHHHHHHHHHHhCCCCeEEECCCCCCC
Confidence 11 111 23355799999999888766
No 160
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=33.78 E-value=82 Score=29.52 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=51.2
Q ss_pred cccCChHHHHHHHHHHhcC-CEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhc--CC--CCcEEEcCC------C--
Q 017744 265 FDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC--RY--VDEVIIGAP------W-- 331 (366)
Q Consensus 265 FD~~h~GHi~~L~~A~~~g-d~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~--~~--Vd~Vvi~~~------~-- 331 (366)
-+|+|.+|-.+++.|.+.+ |-|+|--. +-..| .--++.+-|+...+.+ .| -+.|++... -
T Consensus 29 rnPlHraHe~l~~~a~e~~~~~lll~pl----vG~~k---~~d~~~~~r~~~~~~~~~~y~p~~~v~l~~lp~~mr~aGP 101 (215)
T PF01747_consen 29 RNPLHRAHEYLMRRALEKAGDGLLLHPL----VGPTK---PGDIPYEVRVRCYEALIDNYFPKNRVLLSPLPLPMRYAGP 101 (215)
T ss_dssp SS---HHHHHHHHHHHHHHTSEEEEEEB----ESB-S---TTSCCHHHHHHHHHHHHHHCSSTTGEEEEBBESB---SHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCcEEEEec----cCCCC---cCCCCHHHHHHHHHHHHHHhCCCCcEEEeccCchhcccCc
Confidence 8999999999999999876 76555432 22223 3577999999888776 33 255666311 1
Q ss_pred --CchHH-HHHHcCCcEEEECCCCCCCC
Q 017744 332 --EVTKD-MITTFNICLVVHGTVSETNT 356 (366)
Q Consensus 332 --~~~~d-~i~~~~~~~vv~G~~~~~~~ 356 (366)
.+.-- +-+.++++-++-|.|..+..
T Consensus 102 rEallhAiirkN~GcTh~IvGrdhAg~g 129 (215)
T PF01747_consen 102 REALLHAIIRKNYGCTHFIVGRDHAGVG 129 (215)
T ss_dssp HHHHHHHHHHHHTT-SEEEE-TTTT-SC
T ss_pred HHHHHHHHHHHHCCCceEEeCCcCCCcc
Confidence 11112 23557999999999988753
No 161
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=28.62 E-value=3.2e+02 Score=23.81 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCccccEEEecC-C-c-ccc----HHHHHHHh
Q 017744 77 MHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANA-P-Y-AIT----EQFMNRLF 149 (366)
Q Consensus 77 lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vv~~~-p-~-~~~----~eFl~~ll 149 (366)
++.--.+++..|++++..+.+.+...+. .++ .+.+..+ ++|+++.-. + + .++ ..-+.+++
T Consensus 13 l~~~s~el~~~A~~l~~~v~~v~~G~~~-----------~~~-~~~~~~~-Gad~v~~~~~~~~~~~~~~~~a~al~~~i 79 (168)
T cd01715 13 LRELTLEAVTAARKLGGEVTALVIGSGA-----------EAV-AAALKAY-GADKVLVAEDPALAHYLAEPYAPALVALA 79 (168)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEECCCh-----------HHH-HHHHHhc-CCCEEEEecChhhcccChHHHHHHHHHHH
Confidence 5556678999999997555555443211 112 2222333 899887521 1 1 112 13344566
Q ss_pred hccCccEEEEcCCC
Q 017744 150 NEHKIDYIIHGDDP 163 (366)
Q Consensus 150 ~~l~~d~VV~G~D~ 163 (366)
++.+|+.|+.|...
T Consensus 80 ~~~~p~~Vl~~~t~ 93 (168)
T cd01715 80 KKEKPSHILAGATS 93 (168)
T ss_pred HhcCCCEEEECCCc
Confidence 77889999999775
No 162
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=26.72 E-value=4.3e+02 Score=23.00 Aligned_cols=75 Identities=12% Similarity=0.060 Sum_probs=46.1
Q ss_pred cCChHHHHHHHHHHhcCCEEEEEEecCchhhcccCCCCCCCCHHHHHHHHHhcCCCCcEEEcCCCC-----------chH
Q 017744 267 LFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWE-----------VTK 335 (366)
Q Consensus 267 ~~h~GHi~~L~~A~~~gd~LiVgV~sD~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vvi~~~~~-----------~~~ 335 (366)
-++.--.+++..|++++..+.+.+..+ + ..++ ...+. ...+|+|+...... ...
T Consensus 12 ~l~~~s~el~~~A~~l~~~v~~v~~G~-----------~--~~~~-~~~~~-~~Gad~v~~~~~~~~~~~~~~~~a~al~ 76 (168)
T cd01715 12 ELRELTLEAVTAARKLGGEVTALVIGS-----------G--AEAV-AAALK-AYGADKVLVAEDPALAHYLAEPYAPALV 76 (168)
T ss_pred ChHHHHHHHHHHHHHhCCCEEEEEECC-----------C--hHHH-HHHHH-hcCCCEEEEecChhhcccChHHHHHHHH
Confidence 366667789999999976655555422 1 0111 11111 23688888753211 245
Q ss_pred HHHHHcCCcEEEECCCCCCCC
Q 017744 336 DMITTFNICLVVHGTVSETNT 356 (366)
Q Consensus 336 d~i~~~~~~~vv~G~~~~~~~ 356 (366)
+.+++.+|++|+-|....+..
T Consensus 77 ~~i~~~~p~~Vl~~~t~~g~~ 97 (168)
T cd01715 77 ALAKKEKPSHILAGATSFGKD 97 (168)
T ss_pred HHHHhcCCCEEEECCCccccc
Confidence 677888999999998876543
No 163
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=25.57 E-value=2.1e+02 Score=28.77 Aligned_cols=27 Identities=33% Similarity=0.571 Sum_probs=16.1
Q ss_pred CcCCHHHHHH-HHHHHHh-CCeeEEEEcc
Q 017744 75 DLMHYGHANA-LRQAKAL-GDELVVGVVS 101 (366)
Q Consensus 75 D~lH~GH~~l-L~qAk~l-gd~LvVgv~s 101 (366)
||+|.|=..+ +..|+++ +...++|++.
T Consensus 219 DGVHLgq~dl~~~~aR~llg~~~iIG~S~ 247 (347)
T PRK02615 219 DGVHLGQEDLPLAVARQLLGPEKIIGRST 247 (347)
T ss_pred CEEEeChhhcCHHHHHHhcCCCCEEEEec
Confidence 7888876554 4566664 3344566654
No 164
>PRK00536 speE spermidine synthase; Provisional
Probab=25.57 E-value=77 Score=30.60 Aligned_cols=37 Identities=32% Similarity=0.226 Sum_probs=26.4
Q ss_pred CCCCeEEEEecccCcCCHHHHHHHHHHHHhCCeeEEEEccchhh
Q 017744 62 KKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI 105 (366)
Q Consensus 62 ~~~~~~V~~~G~FD~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i 105 (366)
-+++++|+++|-.||- .+|+..+.-. -++.|--|+.+
T Consensus 70 h~~pk~VLIiGGGDGg------~~REvLkh~~-~v~mVeID~~V 106 (262)
T PRK00536 70 KKELKEVLIVDGFDLE------LAHQLFKYDT-HVDFVQADEKI 106 (262)
T ss_pred CCCCCeEEEEcCCchH------HHHHHHCcCC-eeEEEECCHHH
Confidence 3556789999999984 6677766654 35567777764
No 165
>PHA02450 hypothetical protein
Probab=25.35 E-value=24 Score=24.98 Aligned_cols=11 Identities=45% Similarity=0.824 Sum_probs=9.4
Q ss_pred cCccccCChHH
Q 017744 262 DGAFDLFHAGH 272 (366)
Q Consensus 262 ~GsFD~~h~GH 272 (366)
||.||||-.-|
T Consensus 31 pg~fdpfcpdh 41 (53)
T PHA02450 31 PGQFDPFCPDH 41 (53)
T ss_pred CCccCCCCCCC
Confidence 68899998876
No 166
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=24.96 E-value=5.1e+02 Score=26.03 Aligned_cols=108 Identities=22% Similarity=0.216 Sum_probs=62.6
Q ss_pred HHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCccccEEEecCCccccHHHHHHHhhccCccEEEEcC
Q 017744 82 ANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGD 161 (366)
Q Consensus 82 ~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vv~~~p~~~~~eFl~~ll~~l~~d~VV~G~ 161 (366)
.++++.|.+.|.++.|.++.-.. . ..+-..++=+..+..+ +||.++...|. +-.++.+..|+.=+|..
T Consensus 52 ~e~i~~ah~~gkk~~V~~N~~~~----~-~~~~~~~~~l~~l~e~-GvDaviv~Dpg------~i~l~~e~~p~l~ih~S 119 (347)
T COG0826 52 AEAVELAHSAGKKVYVAVNTLLH----N-DELETLERYLDRLVEL-GVDAVIVADPG------LIMLARERGPDLPIHVS 119 (347)
T ss_pred HHHHHHHHHcCCeEEEEeccccc----c-chhhHHHHHHHHHHHc-CCCEEEEcCHH------HHHHHHHhCCCCcEEEe
Confidence 34555666667778887775321 1 0111122333334454 89999997763 33445556677666665
Q ss_pred CCCCCCCCCchHHHHHhCCeEEEeccCCCCCHHHHHHHHHhc
Q 017744 162 DPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS 203 (366)
Q Consensus 162 D~~fg~~g~~~~~~lk~~g~~~~v~r~~~vSST~Ir~rI~~~ 203 (366)
-...-.+ ....+++++.| ...+-...-+|-.+|++.+.+.
T Consensus 120 ~q~~v~N-~~~~~f~~~~G-~~rvVl~rEls~~ei~~i~~~~ 159 (347)
T COG0826 120 TQANVTN-AETAKFWKELG-AKRVVLPRELSLEEIKEIKEQT 159 (347)
T ss_pred eeEecCC-HHHHHHHHHcC-CEEEEeCccCCHHHHHHHHHhC
Confidence 5544433 33466777777 3333334468899999877655
No 167
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=23.04 E-value=3.1e+02 Score=26.41 Aligned_cols=93 Identities=16% Similarity=0.037 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhC-CeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcC-cccc---EEEecCCccccHHHHH--HHhh
Q 017744 78 HYGHANALRQAKALG-DELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVD---EVIANAPYAITEQFMN--RLFN 150 (366)
Q Consensus 78 H~GH~~lL~qAk~lg-d~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~-~~VD---~vv~~~p~~~~~eFl~--~ll~ 150 (366)
.-+..++++...+.| +.+++.=++-+ .+.+|.+||.++++.. +.++ -|+.+... -+.+-++ +..+
T Consensus 20 ~~~l~~l~~~l~~~Gv~gi~v~GstGE-------~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~ 91 (289)
T cd00951 20 EDAYRAHVEWLLSYGAAALFAAGGTGE-------FFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAE 91 (289)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCCcC-------cccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHH
Confidence 357788888888776 54444333222 4678999999998852 1121 13444443 2333332 1336
Q ss_pred ccCccEEEEcCCCCCCCCCCchHHHHHh
Q 017744 151 EHKIDYIIHGDDPCLLPDGTDAYALAKK 178 (366)
Q Consensus 151 ~l~~d~VV~G~D~~fg~~g~~~~~~lk~ 178 (366)
+.++|.+++-.-+.+..+.++.++..+.
T Consensus 92 ~~Gad~v~~~pP~y~~~~~~~i~~~f~~ 119 (289)
T cd00951 92 KAGADGILLLPPYLTEAPQEGLYAHVEA 119 (289)
T ss_pred HhCCCEEEECCCCCCCCCHHHHHHHHHH
Confidence 6899999888776665544444544443
No 168
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=23.01 E-value=1.9e+02 Score=28.83 Aligned_cols=91 Identities=19% Similarity=0.160 Sum_probs=48.5
Q ss_pred CcCCHHHHHHHHHHHHhCCeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCccccEEEecCCccc-------c-HHHH-
Q 017744 75 DLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAI-------T-EQFM- 145 (366)
Q Consensus 75 D~lH~GH~~lL~qAk~lgd~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vv~~~p~~~-------~-~eFl- 145 (366)
|+-|.+... ..++.++.+.-+|.-||.........+.+ + ++.++.+..-++|=-+..-..|.- + .+++
T Consensus 166 DlSH~s~kt-~~Dvl~~s~~PviaSHSN~~al~~h~RNl-~-D~qlkaI~~~gGvIgv~~~~~fl~~~~~~~atldd~v~ 242 (313)
T COG2355 166 DLSHLSDKT-FWDVLDLSKAPVVASHSNARALVDHPRNL-S-DEQLKAIAETGGVIGVNFIPAFLRPGGAARATLDDLVR 242 (313)
T ss_pred EecccCCcc-HHHHHhccCCceEEecCCchhccCCCCCC-C-HHHHHHHHhcCCEEEEEeehhhccCCCCCCCCHHHHHH
Confidence 667777643 34455556666777788765322111223 3 333444444345444432122222 1 2333
Q ss_pred --HHHhhccCccEEEEcCCCCCCCC
Q 017744 146 --NRLFNEHKIDYIIHGDDPCLLPD 168 (366)
Q Consensus 146 --~~ll~~l~~d~VV~G~D~~fg~~ 168 (366)
+.+.+..++|.|..|.||.-+..
T Consensus 243 hI~h~v~~~G~dhVglGsDf~g~~~ 267 (313)
T COG2355 243 HIDHFVELVGIDHVGLGSDFDGGTG 267 (313)
T ss_pred HHHHHHHhcCcceeEecccccCCCC
Confidence 33556789999999999975544
No 169
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=22.26 E-value=1.6e+02 Score=26.32 Aligned_cols=45 Identities=13% Similarity=0.188 Sum_probs=28.3
Q ss_pred CHHHHH-HHHHhcCCCCcEEEcCCCCchHHHHHHcCCcEEEECCCC
Q 017744 308 HLHERS-LSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVS 352 (366)
Q Consensus 308 ~~~eR~-~~v~~~~~Vd~Vvi~~~~~~~~d~i~~~~~~~vv~G~~~ 352 (366)
++-+++ +.+++++.+|+|++.....-..+.++++++.++.+-.+.
T Consensus 25 pLi~~~i~~a~~s~~~d~IvVaTd~~~i~~~~~~~g~~v~~~~~~~ 70 (217)
T PF02348_consen 25 PLIEYVIERAKQSKLIDEIVVATDDEEIDDIAEEYGAKVIFRRGSL 70 (217)
T ss_dssp EHHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHTTSEEEE--TTS
T ss_pred cHHHHHHHHHHhCCCCCeEEEeCCCHHHHHHHHHcCCeeEEcChhh
Confidence 344555 555667777887777666666677777777776654443
No 170
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=21.85 E-value=2.3e+02 Score=26.41 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=15.6
Q ss_pred cCcCCHHHH-HHHHHHHHh-CCeeEEEEc
Q 017744 74 FDLMHYGHA-NALRQAKAL-GDELVVGVV 100 (366)
Q Consensus 74 FD~lH~GH~-~lL~qAk~l-gd~LvVgv~ 100 (366)
-||+|+|.. .-+.++++. +...++|++
T Consensus 88 adGVHLg~~d~~~~~~r~~~~~~~iiG~s 116 (221)
T PRK06512 88 ADGLHIEGNLAALAEAIEKHAPKMIVGFG 116 (221)
T ss_pred CCEEEECccccCHHHHHHhcCCCCEEEec
Confidence 467888843 234555543 445667764
No 171
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=21.68 E-value=5e+02 Score=22.77 Aligned_cols=70 Identities=20% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHhC---CeeEEEEccchhhhhcCCCCCCcHHHHH-HHHhcCccccEEEecCCccccH-------HHHHHHhh
Q 017744 82 ANALRQAKALG---DELVVGVVSDEEIIANKGPPVLSMEERL-ALVSGLKWVDEVIANAPYAITE-------QFMNRLFN 150 (366)
Q Consensus 82 ~~lL~qAk~lg---d~LvVgv~sd~~i~~~K~~pi~t~eER~-~ll~~~~~VD~vv~~~p~~~~~-------eFl~~ll~ 150 (366)
.+++..|++++ ..+++.+...+ .++-. +....+ ++|+++.-....+.. +-+..+++
T Consensus 22 ~e~l~~A~~l~~~~~~v~~v~~G~~------------~~~~~~~~~~~~-Gad~v~~~~~~~~~~~~~~~~a~~l~~~i~ 88 (181)
T cd01985 22 LEAVEAALRLKEYGGEVTALVIGPP------------AAEVALREALAM-GADKVLLVEDPALAGYDPEATAKALAALIK 88 (181)
T ss_pred HHHHHHHHHHhhcCCeEEEEEECCh------------HHHHHHHHHHHh-CCCEEEEEecCcccCCChHHHHHHHHHHHH
Q ss_pred ccCccEEEEcCCCC
Q 017744 151 EHKIDYIIHGDDPC 164 (366)
Q Consensus 151 ~l~~d~VV~G~D~~ 164 (366)
+.+|++|+.|....
T Consensus 89 ~~~p~~Vl~g~t~~ 102 (181)
T cd01985 89 KEKPDLILAGATSI 102 (181)
T ss_pred HhCCCEEEECCccc
No 172
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=21.64 E-value=3.8e+02 Score=22.76 Aligned_cols=60 Identities=13% Similarity=0.088 Sum_probs=34.4
Q ss_pred HHHHHHhhccCccEEEEcCCCCCC-CCCC------chHHHHHhCCeEEEeccCCCCCHHHHHHHHHh
Q 017744 143 QFMNRLFNEHKIDYIIHGDDPCLL-PDGT------DAYALAKKVGRYKQIKRTEGVSSTDIVGRILS 202 (366)
Q Consensus 143 eFl~~ll~~l~~d~VV~G~D~~fg-~~g~------~~~~~lk~~g~~~~v~r~~~vSST~Ir~rI~~ 202 (366)
+.+.+++++++++.||+|.-.... ..+. .-.+.|+..-.+.+.--.|..||..-.+++.+
T Consensus 38 ~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~DEr~TT~~A~~~l~~ 104 (130)
T TIGR00250 38 SRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQKFANRLEGRFGVPVVLWDERLSTVEAESGLFA 104 (130)
T ss_pred HHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcCHHHHHHHHHH
Confidence 456667788999999999665432 2222 11222222112222223578899888888765
No 173
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=21.38 E-value=4.9e+02 Score=25.37 Aligned_cols=37 Identities=27% Similarity=0.151 Sum_probs=27.0
Q ss_pred CCeEEEEecccCcCCHHHHHHHHHHHHhC-CeeEEEEccchhhh
Q 017744 64 KRVRVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEII 106 (366)
Q Consensus 64 ~~~~V~~~G~FD~lH~GH~~lL~qAk~lg-d~LvVgv~sd~~i~ 106 (366)
++++|+++|--|| ..+|++.+.. .+-++.|--|+.+.
T Consensus 76 ~pk~VLiiGgGdG------~tlRevlkh~~ve~i~~VEID~~Vi 113 (282)
T COG0421 76 NPKRVLIIGGGDG------GTLREVLKHLPVERITMVEIDPAVI 113 (282)
T ss_pred CCCeEEEECCCcc------HHHHHHHhcCCcceEEEEEcCHHHH
Confidence 3458999999998 4777777765 44566778888753
No 174
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=21.10 E-value=7.7e+02 Score=23.94 Aligned_cols=30 Identities=33% Similarity=0.589 Sum_probs=24.9
Q ss_pred EEEecccCc-CCHHHHHHHHHHHHhC-CeeEE
Q 017744 68 VYMDGCFDL-MHYGHANALRQAKALG-DELVV 97 (366)
Q Consensus 68 V~~~G~FD~-lH~GH~~lL~qAk~lg-d~LvV 97 (366)
++.++++.+ +|+|=.+.+++|++.| |-++|
T Consensus 97 ivlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv 128 (265)
T COG0159 97 IVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV 128 (265)
T ss_pred EEEEEeccHHHHhhHHHHHHHHHHcCCCEEEe
Confidence 678889998 7899999999999987 55444
No 175
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=20.76 E-value=1.1e+02 Score=30.61 Aligned_cols=45 Identities=22% Similarity=0.520 Sum_probs=34.8
Q ss_pred CcHHHHHHHHhcCccccEEEecCCccccHHHHHHHhhccCccEEEEcCC
Q 017744 114 LSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDD 162 (366)
Q Consensus 114 ~t~eER~~ll~~~~~VD~vv~~~p~~~~~eFl~~ll~~l~~d~VV~G~D 162 (366)
+..+|=.+++.. .|.||-+.||+.-.||+..|+ +++-+++|+|.-
T Consensus 124 FrS~E~i~Ll~e---ADIVVTNPPFSLFrEyv~~Li-~~~KkFlIIGN~ 168 (336)
T PF13651_consen 124 FRSDECIELLKE---ADIVVTNPPFSLFREYVAQLI-EYDKKFLIIGNI 168 (336)
T ss_pred cCcHHHHHHHhc---CCEEEeCCCcHHHHHHHHHHH-HhCCCEEEEecc
Confidence 334666666664 899999999999999997665 578899999944
No 176
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=20.12 E-value=4.9e+02 Score=24.84 Aligned_cols=93 Identities=23% Similarity=0.161 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhC-CeeEEEEccchhhhhcCCCCCCcHHHHHHHHhcCc-ccc---EEEecCCccccHHHHHH--Hhhc
Q 017744 79 YGHANALRQAKALG-DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK-WVD---EVIANAPYAITEQFMNR--LFNE 151 (366)
Q Consensus 79 ~GH~~lL~qAk~lg-d~LvVgv~sd~~i~~~K~~pi~t~eER~~ll~~~~-~VD---~vv~~~p~~~~~eFl~~--ll~~ 151 (366)
-+-.++++...+.| +.+++.=++-+ -+.+|.+||.++++... .++ .++.+..-.-+++-++. ..++
T Consensus 22 ~~l~~~i~~l~~~Gv~gi~~~Gs~GE-------~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~ 94 (292)
T PRK03170 22 AALRKLVDYLIANGTDGLVVVGTTGE-------SPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEK 94 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCc-------cccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHH
Confidence 56777777777766 44443322222 46788999999988521 111 23333322222333332 3466
Q ss_pred cCccEEEEcCCCCCCCCCCchHHHHHh
Q 017744 152 HKIDYIIHGDDPCLLPDGTDAYALAKK 178 (366)
Q Consensus 152 l~~d~VV~G~D~~fg~~g~~~~~~lk~ 178 (366)
.++|.+++..-+.+.....+-++..+.
T Consensus 95 ~G~d~v~~~pP~~~~~~~~~i~~~~~~ 121 (292)
T PRK03170 95 AGADGALVVTPYYNKPTQEGLYQHFKA 121 (292)
T ss_pred cCCCEEEECCCcCCCCCHHHHHHHHHH
Confidence 899988887776665544444444443
Done!