BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017747
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 295 bits (754), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 159/374 (42%), Positives = 230/374 (61%), Gaps = 26/374 (6%)
Query: 1 MDVEKLFHMAGGTGPTSYARNSSLQKKASDTVKHITLEALQQLYLEIDPKT-INIADLGC 59
MDV ++ HM GG G SYA NS +Q++ K IT A+ LY T + IADLGC
Sbjct: 1 MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGC 60
Query: 60 SSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLRN 119
SSGPN L + + ++TVE +++ + +PE+ +LNDLP NDFN++F++LP + N
Sbjct: 61 SSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLP-----IEN 115
Query: 120 ERGGGSSPSVYIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESINKGN 179
+ G +I G PGSFYGRLFP N+LHFIHSS SL WLS+VP +G NKGN
Sbjct: 116 DVDG----VCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVP------IGIESNKGN 165
Query: 180 IYISESSPSAVSKAYFKQFQEDFTLFLRSRSEELVVGGRMVLILLGRIGPDHVDRGNSFF 239
IY++ + P +V AY+KQFQED LFLR R++E+V GGRMVL +LGR D
Sbjct: 166 IYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLI 225
Query: 240 WELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKLDQLDMFQV--- 296
W+LL+ +L +VS+G IE+EK+ ++ Y PS E+E E+ +EGSF +D ++ ++
Sbjct: 226 WQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWS 285
Query: 297 ----ERQGHDRGESYGSAVARTVRAIQESTIIHHFGIGEGVLDNLFEIYGRLVDEEMAKE 352
+ G E G VAR +RA+ E ++ HF GE +++++F Y L+ E M+KE
Sbjct: 286 SCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHF--GEAIIEDVFHRYKLLIIERMSKE 343
Query: 353 EIKPLTFVL-LLRK 365
+ K + ++ L+RK
Sbjct: 344 KTKFINVIVSLIRK 357
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 241 bits (616), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 146/357 (40%), Positives = 200/357 (56%), Gaps = 28/357 (7%)
Query: 1 MDVEKLFHMAGGTGPTSYARNSSLQKKASDTVKHITLEALQQLYLEIDP---KTINIADL 57
M+++++ HM GG G TSYA+NSS VK + + +Q+L P K + DL
Sbjct: 1 MELQEVLHMNGGEGDTSYAKNSSYNLFLI-RVKPVLEQCIQELLRANLPNINKCFKVGDL 59
Query: 58 GCSSGPNTLAIIKDFVQTVEMTSREILQN-PAPEFHFYLNDLPTNDFNSVFKALPDFHRQ 116
GC+SGPNT + ++D VQ+++ +E P +LNDL NDFNSVFK LP F+R
Sbjct: 60 GCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRN 119
Query: 117 LRNERGGGSSPSVYIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESIN 176
L E G S I PGSFY RLFP S+HF+HS LHWLS+VP L E+G S+N
Sbjct: 120 LEKENGRKIG-SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVN 178
Query: 177 KGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSEELVVGGRMVLILLGRIGPDHVDRGN 236
KG IY S++S + KAY QF +DFT FLR SEEL+ GRM+L + + D D N
Sbjct: 179 KGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICK--EDEFDHPN 236
Query: 237 SFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKLDQLDMFQV 296
S +LL S+ LV +G +E+EKL +++ YAPS EE++ V EGSF++ L+ F
Sbjct: 237 SM--DLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNA 294
Query: 297 ----------ERQGHDRG------ESYGSAVARTVRAIQESTIIHHFGIGEGVLDNL 337
+ QG + + VA VR+I E + HF GE +L +L
Sbjct: 295 PYDAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPILASHF--GEAILPDL 349
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 240 bits (612), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 143/353 (40%), Positives = 206/353 (58%), Gaps = 20/353 (5%)
Query: 1 MDVEKLFHMAGGTGPTSYARNSSLQKKASDTVKHITLEALQQLYLEIDP---KTINIADL 57
M+++++ M GG G TSYA+NS+ + VK + + +++L P K I +ADL
Sbjct: 1 MELQEVLRMNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNINKCIKVADL 60
Query: 58 GCSSGPNTLAIIKDFVQTVEMTSREILQN-PAPEFHFYLNDLPTNDFNSVFKALPDFHRQ 116
GC+SGPNTL ++D VQ+++ +E P +LNDL NDFNSVFK LP F+R+
Sbjct: 61 GCASGPNTLLTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFPNDFNSVFKLLPSFYRK 120
Query: 117 LRNERGGGSSPSVYIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESIN 176
L E G S I PGSFY RLFP S+HF+HS L WLS+VP L E+G N
Sbjct: 121 LEKENGRKIG-SCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGIGTN 179
Query: 177 KGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSEELVVGGRMVLILLGRIGPDHVDRGN 236
KG+IY S++S V KAY QF +DFT FLR SEEL GRM+L + + G + +D N
Sbjct: 180 KGSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICK-GVE-LDARN 237
Query: 237 SFFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKLDQLDMFQV 296
+ +LL ++ LV +G +E+EKL +++ Y PS EE++ V EGSF++ L+ F+V
Sbjct: 238 AI--DLLEMAINDLVVEGHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLETFKV 295
Query: 297 ERQGHDRGESY------GSAVARTVRAIQESTIIHHFGIGEGVLDNLFEIYGR 343
+D G S VA +VRA+ E + HF GE ++ ++F + +
Sbjct: 296 L---YDAGFSIDDEHIKAEYVASSVRAVYEPILASHF--GEAIIPDIFHRFAK 343
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 191 bits (486), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 121/349 (34%), Positives = 183/349 (52%), Gaps = 16/349 (4%)
Query: 1 MDVEKLFHMAGGTGPTSYARNSSLQKKASDTVKHITLEALQQLYL--EIDPKTINIADLG 58
M +E+L M GG G SYA NS Q + ++ H+ E L+ ++L P DLG
Sbjct: 1 MKLERLLSMKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLG 60
Query: 59 CSSGPNTLAIIKDFVQTVEMTSREILQNPAPEFHFYLNDLPTNDFNSVFKALPDFHRQLR 118
CSSG NT+ II V+ + +P PEF + +DLP+NDFN++F+ LP
Sbjct: 61 CSSGANTVHIIDFIVKHISKRFDAAGIDP-PEFTAFFSDLPSNDFNTLFQLLPPLVSNTC 119
Query: 119 NER--GGGSSPSVYIAGYPGSFYGRLFPNNSLHFIHSSNSLHWLSKVPPTLYNEMGESIN 176
E + S ++AG PGSFY RLFP ++ F HS+ SLHWLS+VP ++ + + N
Sbjct: 120 MEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYN 179
Query: 177 KGNIYISESSPSAVSKAYFKQFQEDFTLFLRSRSEELVVGGRMVLILLGRIGPDHVDRGN 236
+G ++I + + AY +QFQ D FLR+R+ E+ GG M L+ LGR D D+G
Sbjct: 180 RGRVFI-HGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGG 238
Query: 237 S--FFWELLSRSLAILVSQGEIEKEKLVAYHAHFYAPSKEEIEGEVGREGSFKLDQLDMF 294
+ F + LV +G + EK ++ YAPS ++ + V GSF +D+L ++
Sbjct: 239 AGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVY 298
Query: 295 Q-----VERQGHDRGESYGSAVARTVRAIQESTIIHHFGIGEGVLDNLF 338
+ V + D E G A A + R++ + H IGE + + LF
Sbjct: 299 KGGSPLVVNEPDDASE-VGRAFASSCRSVAGVLVEAH--IGEELSNKLF 344
>pdb|2W8H|A Chain A, Crystal Structure Of Spin Labeled Wza24-345.
pdb|2W8H|B Chain B, Crystal Structure Of Spin Labeled Wza24-345.
pdb|2W8H|C Chain C, Crystal Structure Of Spin Labeled Wza24-345.
pdb|2W8H|D Chain D, Crystal Structure Of Spin Labeled Wza24-345.
pdb|2W8H|E Chain E, Crystal Structure Of Spin Labeled Wza24-345.
pdb|2W8H|F Chain F, Crystal Structure Of Spin Labeled Wza24-345.
pdb|2W8H|G Chain G, Crystal Structure Of Spin Labeled Wza24-345.
pdb|2W8H|H Chain H, Crystal Structure Of Spin Labeled Wza24-345
Length = 329
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 246 SLAILVSQGEIEKEKLVAYHAHFYAPSKEEIE----GEVGREGSFKLDQLDMFQVERQGH 301
SL L+ +G++ + L+ + + PS ++++ GEVG++ + K+D+ M E G+
Sbjct: 209 SLYALMQKGDLTQNHLLYHGDILFIPSNDDLKVFVMGEVGKQSTLKMDRSGMTLAEALGN 268
Query: 302 DRGES 306
G S
Sbjct: 269 AEGIS 273
>pdb|2W8I|A Chain A, Crystal Structure Of Wza24-345.
pdb|2W8I|B Chain B, Crystal Structure Of Wza24-345.
pdb|2W8I|C Chain C, Crystal Structure Of Wza24-345.
pdb|2W8I|D Chain D, Crystal Structure Of Wza24-345.
pdb|2W8I|E Chain E, Crystal Structure Of Wza24-345.
pdb|2W8I|F Chain F, Crystal Structure Of Wza24-345.
pdb|2W8I|G Chain G, Crystal Structure Of Wza24-345.
pdb|2W8I|H Chain H, Crystal Structure Of Wza24-345
Length = 329
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 246 SLAILVSQGEIEKEKLVAYHAHFYAPSKEEIE----GEVGREGSFKLDQLDMFQVERQGH 301
SL L+ +G++ + L+ + + PS ++++ GEVG++ + K+D+ M E G+
Sbjct: 209 SLYALMQKGDLTQNHLLYHGDILFIPSNDDLKVFVMGEVGKQSTLKMDRSGMTLAEALGN 268
Query: 302 DRGES 306
G S
Sbjct: 269 AEGIS 273
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 284 GSFKLDQLDMFQVERQGHDRGESYGSAVARTVRAIQESTIIHHFGIGEGVLDNLFEIYGR 343
S + D L QV + G G + + AR V+A+ T+ FG+ EG+++ Y R
Sbjct: 290 ASSRRDDLSSLQVLQVG---GAKFSAEAARRVKAVFGCTLQQVFGMAEGLVN-----YTR 341
Query: 344 LVDEE--MAKEEIKPLT 358
L D E + + KP++
Sbjct: 342 LDDPEEIIVNTQGKPMS 358
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 284 GSFKLDQLDMFQVERQGHDRGESYGSAVARTVRAIQESTIIHHFGIGEGVLDNLFEIYGR 343
S + D L QV + G G + + AR V+A+ T+ FG EG+++ Y R
Sbjct: 290 ASSRRDDLSSLQVLQVG---GAKFSAEAARRVKAVFGCTLQQVFGXAEGLVN-----YTR 341
Query: 344 LVDEE 348
L D E
Sbjct: 342 LDDPE 346
>pdb|3NYU|A Chain A, X-Ray Crystal Structure Of The Wbpe (Wlbe)
Aminotransferase From Pseudomonas Aeruginosa As The Plp
Internal Aldimine Adduct With Lysine 185
pdb|3NYU|B Chain B, X-Ray Crystal Structure Of The Wbpe (Wlbe)
Aminotransferase From Pseudomonas Aeruginosa As The Plp
Internal Aldimine Adduct With Lysine 185
pdb|3NYU|C Chain C, X-Ray Crystal Structure Of The Wbpe (Wlbe)
Aminotransferase From Pseudomonas Aeruginosa As The Plp
Internal Aldimine Adduct With Lysine 185
pdb|3NYU|D Chain D, X-Ray Crystal Structure Of The Wbpe (Wlbe)
Aminotransferase From Pseudomonas Aeruginosa As The Plp
Internal Aldimine Adduct With Lysine 185
Length = 367
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 2 DVEKLFHMAGGTGPTSYARNSSLQKKASDTVKHITLEALQQLYLEIDPKTINIAD--LGC 59
D ++ MA G GP A T + + L + +Y++IDP+T N+ L
Sbjct: 61 DALQIVQMALGVGPGDEVITPGFTYVA--TAETVALLGAKPVYVDIDPRTYNLDPQLLEA 118
Query: 60 SSGPNTLAII 69
+ P T AII
Sbjct: 119 AITPRTKAII 128
>pdb|3NU7|A Chain A, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With The
Cofactor Pmp
pdb|3NU7|B Chain B, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With The
Cofactor Pmp
pdb|3NUB|A Chain A, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With Product
As The External Aldimine
pdb|3NUB|B Chain B, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With Product
As The External Aldimine
Length = 359
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 2 DVEKLFHMAGGTGPTSYARNSSLQKKASDTVKHITLEALQQLYLEIDPKTINIAD--LGC 59
D ++ MA G GP A T + + L + +Y++IDP+T N+ L
Sbjct: 61 DALQIVQMALGVGPGDEVITPGFTYVA--TAETVALLGAKPVYVDIDPRTYNLDPQLLEA 118
Query: 60 SSGPNTLAII 69
+ P T AII
Sbjct: 119 AITPRTKAII 128
>pdb|3NU8|A Chain A, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With The
Internal Aldimine
pdb|3NU8|B Chain B, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With The
Internal Aldimine
Length = 359
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 2 DVEKLFHMAGGTGPTSYARNSSLQKKASDTVKHITLEALQQLYLEIDPKTINIAD--LGC 59
D ++ MA G GP A T + + L + +Y++IDP+T N+ L
Sbjct: 61 DALQIVQMALGVGPGDEVITPGFTYVA--TAETVALLGAKPVYVDIDPRTYNLDPQLLEA 118
Query: 60 SSGPNTLAII 69
+ P T AII
Sbjct: 119 AITPRTKAII 128
>pdb|3NYS|A Chain A, X-Ray Structure Of The K185a Mutant Of Wbpe (Wlbe) From
Pseudomonas Aeruginosa In Complex With Plp At 1.45
Angstrom Resolution
pdb|3NYT|A Chain A, X-Ray Crystal Structure Of The Wlbe (Wpbe)
Aminotransferase From Pseudomonas Aeruginosa, Mutation
K185a, In Complex With The Plp External Aldimine Adduct
With Udp-3-Amino-2-N-Acetyl-Glucuronic Acid, At 1.3
Angstrom Resolution
Length = 367
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 2 DVEKLFHMAGGTGPTSYARNSSLQKKASDTVKHITLEALQQLYLEIDPKTINIAD--LGC 59
D ++ MA G GP A T + + L + +Y++IDP+T N+ L
Sbjct: 61 DALQIVQMALGVGPGDEVITPGFTYVA--TAETVALLGAKPVYVDIDPRTYNLDPQLLEA 118
Query: 60 SSGPNTLAII 69
+ P T AII
Sbjct: 119 AITPRTKAII 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,401,411
Number of Sequences: 62578
Number of extensions: 485683
Number of successful extensions: 1075
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1052
Number of HSP's gapped (non-prelim): 14
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)